Query 008843
Match_columns 551
No_of_seqs 395 out of 2627
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 17:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 2E-100 5E-105 847.8 50.5 511 1-521 62-577 (613)
2 PLN03211 ABC transporter G-25; 100.0 1.5E-97 3E-102 832.7 54.1 496 1-505 100-610 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 5.4E-97 1E-101 827.2 55.7 516 1-522 57-583 (617)
4 TIGR00956 3a01205 Pleiotropic 100.0 8.4E-94 1.8E-98 857.4 49.8 501 1-504 93-620 (1394)
5 PLN03140 ABC transporter G fam 100.0 4.6E-92 1E-96 840.0 54.8 506 1-520 912-1434(1470)
6 PLN03140 ABC transporter G fam 100.0 9.8E-93 2.1E-97 845.8 49.0 517 1-521 197-756 (1470)
7 KOG0065 Pleiotropic drug resis 100.0 9E-93 2E-97 800.4 36.0 494 1-506 823-1325(1391)
8 TIGR00956 3a01205 Pleiotropic 100.0 9.2E-90 2E-94 822.6 55.4 493 1-505 795-1305(1394)
9 KOG0065 Pleiotropic drug resis 100.0 6.5E-86 1.4E-90 744.8 35.5 500 1-504 147-659 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 5.7E-47 1.2E-51 356.9 18.9 199 1-221 34-238 (240)
11 COG1135 AbcC ABC-type metal io 100.0 1.3E-43 2.8E-48 350.1 17.7 200 1-223 38-246 (339)
12 COG1131 CcmA ABC-type multidru 100.0 1.7E-42 3.7E-47 353.7 20.4 188 1-203 37-229 (293)
13 COG3839 MalK ABC-type sugar tr 100.0 1.4E-42 3E-47 354.5 18.5 196 1-219 35-234 (338)
14 COG1116 TauB ABC-type nitrate/ 100.0 2E-42 4.4E-47 335.1 18.7 172 1-186 35-207 (248)
15 COG1125 OpuBA ABC-type proline 100.0 1.1E-42 2.4E-47 334.1 15.8 184 1-196 33-222 (309)
16 COG1136 SalX ABC-type antimicr 100.0 1E-41 2.2E-46 329.8 20.5 174 1-188 37-220 (226)
17 COG1118 CysA ABC-type sulfate/ 100.0 4.5E-42 9.7E-47 338.3 17.0 185 1-197 34-225 (345)
18 COG3842 PotA ABC-type spermidi 100.0 3.4E-42 7.4E-47 353.4 16.5 199 1-221 37-239 (352)
19 COG1127 Ttg2A ABC-type transpo 100.0 6.7E-42 1.5E-46 327.3 16.7 184 1-196 40-232 (263)
20 COG1120 FepC ABC-type cobalami 100.0 5.8E-42 1.3E-46 337.7 16.6 186 1-197 34-226 (258)
21 COG4555 NatA ABC-type Na+ tran 100.0 1.8E-41 3.8E-46 315.6 13.3 182 1-196 34-219 (245)
22 COG3840 ThiQ ABC-type thiamine 100.0 2.9E-41 6.3E-46 309.3 14.4 182 1-196 31-216 (231)
23 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-40 2.6E-45 326.9 19.4 183 1-197 36-225 (254)
24 COG1117 PstB ABC-type phosphat 100.0 5.8E-41 1.3E-45 315.0 15.4 203 1-220 39-249 (253)
25 PRK11650 ugpC glycerol-3-phosp 100.0 8.9E-40 1.9E-44 342.2 21.2 182 1-196 36-221 (356)
26 COG2884 FtsE Predicted ATPase 100.0 1.1E-39 2.5E-44 301.1 18.8 179 1-193 34-220 (223)
27 PRK11432 fbpC ferric transport 100.0 1.1E-39 2.5E-44 340.5 20.8 182 1-196 38-223 (351)
28 TIGR03265 PhnT2 putative 2-ami 100.0 1.4E-39 3.1E-44 340.3 21.2 182 1-196 36-221 (353)
29 TIGR02314 ABC_MetN D-methionin 100.0 2.5E-39 5.4E-44 336.5 21.5 182 1-196 37-227 (343)
30 PRK13537 nodulation ABC transp 100.0 2.2E-39 4.8E-44 333.3 20.7 182 1-196 39-224 (306)
31 TIGR03258 PhnT 2-aminoethylpho 100.0 3.2E-39 6.9E-44 338.2 21.1 182 1-196 37-225 (362)
32 PRK09452 potA putrescine/sperm 100.0 3E-39 6.4E-44 339.8 20.7 182 1-196 46-231 (375)
33 COG3638 ABC-type phosphate/pho 100.0 1.5E-39 3.2E-44 310.5 15.7 184 1-196 36-234 (258)
34 PRK10851 sulfate/thiosulfate t 100.0 4.6E-39 1E-43 336.4 20.7 185 1-196 34-223 (353)
35 cd03261 ABC_Org_Solvent_Resist 100.0 9.7E-39 2.1E-43 316.6 20.7 183 1-196 32-223 (235)
36 COG1124 DppF ABC-type dipeptid 100.0 7.6E-39 1.6E-43 307.7 18.9 181 1-196 39-228 (252)
37 PRK11607 potG putrescine trans 100.0 9.5E-39 2.1E-43 336.4 21.2 182 1-196 51-236 (377)
38 TIGR01188 drrA daunorubicin re 100.0 9.3E-39 2E-43 328.4 20.7 182 1-196 25-210 (302)
39 TIGR01186 proV glycine betaine 100.0 2.1E-38 4.6E-43 331.4 21.3 182 1-196 25-216 (363)
40 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.5E-38 1.2E-42 308.2 21.9 181 1-195 36-219 (220)
41 PRK11000 maltose/maltodextrin 100.0 3E-38 6.5E-43 332.5 21.2 182 1-196 35-220 (369)
42 PRK13536 nodulation factor exp 100.0 3.8E-38 8.2E-43 327.9 21.5 182 1-196 73-258 (340)
43 cd03259 ABC_Carb_Solutes_like 100.0 4.7E-38 1E-42 307.0 20.7 178 1-192 32-213 (213)
44 cd03219 ABC_Mj1267_LivG_branch 100.0 4E-38 8.7E-43 312.2 20.3 185 1-196 32-229 (236)
45 TIGR00960 3a0501s02 Type II (G 100.0 3.6E-38 7.8E-43 308.5 19.1 174 1-188 35-216 (216)
46 cd03265 ABC_DrrA DrrA is the A 100.0 5.9E-38 1.3E-42 307.9 20.4 182 1-196 32-218 (220)
47 COG1122 CbiO ABC-type cobalt t 100.0 1.8E-38 3.8E-43 312.3 16.6 182 1-196 36-225 (235)
48 cd03218 ABC_YhbG The ABC trans 100.0 7.4E-38 1.6E-42 309.5 20.3 182 1-196 32-219 (232)
49 TIGR01187 potA spermidine/putr 100.0 9E-38 2E-42 323.9 21.8 182 1-196 2-187 (325)
50 TIGR01288 nodI ATP-binding ABC 100.0 7.3E-38 1.6E-42 321.9 20.7 182 1-196 36-221 (303)
51 cd03296 ABC_CysA_sulfate_impor 100.0 1.2E-37 2.7E-42 309.6 20.6 185 1-196 34-223 (239)
52 PRK13643 cbiO cobalt transport 100.0 1.1E-37 2.5E-42 318.2 20.8 204 1-219 38-255 (288)
53 cd03301 ABC_MalK_N The N-termi 100.0 1.7E-37 3.6E-42 303.0 20.9 178 1-192 32-213 (213)
54 cd03258 ABC_MetN_methionine_tr 100.0 1.2E-37 2.7E-42 308.2 20.1 182 1-196 37-227 (233)
55 cd03260 ABC_PstB_phosphate_tra 100.0 1.6E-37 3.4E-42 306.3 20.6 183 1-196 32-226 (227)
56 PRK11153 metN DL-methionine tr 100.0 1.4E-37 3E-42 324.8 21.3 182 1-196 37-227 (343)
57 cd03256 ABC_PhnC_transporter A 100.0 1.3E-37 2.9E-42 309.3 20.1 185 1-196 33-231 (241)
58 TIGR01184 ntrCD nitrate transp 100.0 1.9E-37 4.2E-42 306.5 20.8 184 1-196 17-201 (230)
59 cd03234 ABCG_White The White s 100.0 3E-37 6.5E-42 304.2 21.8 182 1-192 39-226 (226)
60 cd03266 ABC_NatA_sodium_export 100.0 2.1E-37 4.7E-42 303.4 20.5 178 1-192 37-218 (218)
61 cd03269 ABC_putative_ATPase Th 100.0 2.1E-37 4.5E-42 301.9 19.9 178 1-192 32-210 (210)
62 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.9E-37 4.2E-42 303.7 19.2 173 1-188 36-218 (218)
63 PRK13637 cbiO cobalt transport 100.0 3.8E-37 8.3E-42 314.2 21.5 182 1-196 39-231 (287)
64 TIGR03522 GldA_ABC_ATP gliding 100.0 2.6E-37 5.6E-42 317.5 20.1 181 1-196 34-218 (301)
65 TIGR02315 ABC_phnC phosphonate 100.0 1.8E-37 4E-42 308.9 18.3 185 1-196 34-232 (243)
66 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.2E-37 7E-42 307.1 20.0 184 1-196 33-222 (242)
67 COG1137 YhbG ABC-type (unclass 100.0 1.5E-38 3.2E-43 295.7 9.6 184 1-196 36-225 (243)
68 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.6E-37 1E-41 310.8 21.4 182 1-196 56-247 (269)
69 cd03263 ABC_subfamily_A The AB 100.0 3.5E-37 7.5E-42 302.3 19.6 181 1-196 34-218 (220)
70 PRK11629 lolD lipoprotein tran 100.0 8.3E-37 1.8E-41 302.4 22.4 179 1-194 41-229 (233)
71 cd03264 ABC_drug_resistance_li 100.0 3.5E-37 7.7E-42 300.4 19.4 177 1-192 31-211 (211)
72 COG0411 LivG ABC-type branched 100.0 7.3E-38 1.6E-42 301.1 14.1 186 1-197 36-237 (250)
73 PRK09536 btuD corrinoid ABC tr 100.0 2.6E-37 5.7E-42 327.0 19.8 184 1-196 35-225 (402)
74 cd03268 ABC_BcrA_bacitracin_re 100.0 2.8E-37 6.1E-42 300.5 18.3 174 1-192 32-208 (208)
75 cd03224 ABC_TM1139_LivF_branch 100.0 3E-37 6.4E-42 303.1 18.6 180 1-196 32-218 (222)
76 PRK11144 modC molybdate transp 100.0 2.6E-37 5.6E-42 323.8 19.3 176 1-196 30-215 (352)
77 PRK09493 glnQ glutamine ABC tr 100.0 6.2E-37 1.4E-41 304.6 20.4 183 1-196 33-222 (240)
78 PRK15079 oligopeptide ABC tran 100.0 7.3E-37 1.6E-41 317.4 21.7 185 1-196 53-248 (331)
79 cd03292 ABC_FtsE_transporter F 100.0 5.7E-37 1.2E-41 299.4 19.6 174 1-188 33-214 (214)
80 TIGR02673 FtsE cell division A 100.0 6.4E-37 1.4E-41 299.2 19.9 173 1-187 34-214 (214)
81 PRK10070 glycine betaine trans 100.0 6.2E-37 1.3E-41 323.9 21.2 182 1-196 60-251 (400)
82 TIGR02142 modC_ABC molybdenum 100.0 5.2E-37 1.1E-41 321.9 20.4 180 1-196 29-218 (354)
83 cd03298 ABC_ThiQ_thiamine_tran 100.0 7.7E-37 1.7E-41 298.0 20.0 178 1-192 30-211 (211)
84 PRK13634 cbiO cobalt transport 100.0 6.1E-37 1.3E-41 313.1 20.1 196 1-211 39-249 (290)
85 COG4175 ProV ABC-type proline/ 100.0 1.2E-37 2.7E-42 307.2 14.4 198 1-221 60-267 (386)
86 PRK13647 cbiO cobalt transport 100.0 9.9E-37 2.2E-41 309.1 21.5 182 1-196 37-224 (274)
87 PRK11248 tauB taurine transpor 100.0 1.3E-36 2.8E-41 305.2 22.0 181 1-195 33-216 (255)
88 cd03297 ABC_ModC_molybdenum_tr 100.0 1E-36 2.2E-41 297.9 20.8 176 1-192 29-214 (214)
89 PRK10895 lipopolysaccharide AB 100.0 6.6E-37 1.4E-41 304.6 19.5 183 1-196 35-223 (241)
90 PRK11264 putative amino-acid A 100.0 9.9E-37 2.1E-41 304.9 20.8 183 1-196 35-230 (250)
91 PRK13631 cbiO cobalt transport 100.0 9E-37 1.9E-41 315.4 21.1 196 1-211 58-279 (320)
92 cd03226 ABC_cobalt_CbiO_domain 100.0 6.1E-37 1.3E-41 297.5 18.4 171 1-189 32-205 (205)
93 PRK13651 cobalt transporter AT 100.0 7.3E-37 1.6E-41 314.2 19.9 181 1-196 39-251 (305)
94 TIGR02211 LolD_lipo_ex lipopro 100.0 1.5E-36 3.2E-41 298.0 20.7 174 1-189 37-220 (221)
95 PRK11831 putative ABC transpor 100.0 1.4E-36 3E-41 307.4 21.0 183 1-196 39-230 (269)
96 PRK13650 cbiO cobalt transport 100.0 1.3E-36 2.8E-41 309.1 20.3 181 1-196 39-226 (279)
97 PRK10619 histidine/lysine/argi 100.0 1.8E-36 3.8E-41 304.5 20.7 183 1-196 37-238 (257)
98 TIGR03415 ABC_choXWV_ATP choli 100.0 1.6E-36 3.4E-41 318.8 21.1 182 1-196 56-251 (382)
99 COG4148 ModC ABC-type molybdat 100.0 1.5E-37 3.3E-42 301.8 12.3 176 2-197 31-216 (352)
100 cd03225 ABC_cobalt_CbiO_domain 100.0 1.6E-36 3.6E-41 295.6 19.7 173 1-187 33-211 (211)
101 PRK10908 cell division protein 100.0 2.2E-36 4.7E-41 297.2 20.5 175 1-189 34-216 (222)
102 cd03257 ABC_NikE_OppD_transpor 100.0 2.6E-36 5.5E-41 297.5 21.1 180 1-192 37-228 (228)
103 PRK11247 ssuB aliphatic sulfon 100.0 1.6E-36 3.5E-41 304.6 19.8 175 1-195 44-219 (257)
104 COG4525 TauB ABC-type taurine 100.0 2.6E-36 5.7E-41 279.5 19.4 181 1-195 37-220 (259)
105 cd03235 ABC_Metallic_Cations A 100.0 1.2E-36 2.6E-41 297.1 18.2 180 1-192 31-213 (213)
106 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.6E-36 5.6E-41 299.5 20.8 181 1-196 33-218 (236)
107 PRK13641 cbiO cobalt transport 100.0 2.3E-36 4.9E-41 308.5 20.8 181 1-196 39-231 (287)
108 cd03262 ABC_HisP_GlnQ_permease 100.0 2.4E-36 5.3E-41 294.7 19.9 175 1-188 32-213 (213)
109 TIGR00972 3a0107s01c2 phosphat 100.0 3.5E-36 7.6E-41 300.6 21.1 190 1-196 33-229 (247)
110 PRK11300 livG leucine/isoleuci 100.0 2.4E-36 5.3E-41 303.0 19.9 185 1-196 37-240 (255)
111 PRK10771 thiQ thiamine transpo 100.0 1.8E-36 4E-41 299.8 18.7 182 1-196 31-216 (232)
112 PRK11308 dppF dipeptide transp 100.0 4.2E-36 9.1E-41 311.4 22.0 184 1-196 47-241 (327)
113 PRK11124 artP arginine transpo 100.0 2.5E-36 5.4E-41 300.7 19.5 182 1-196 34-227 (242)
114 COG0444 DppD ABC-type dipeptid 100.0 3.1E-36 6.7E-41 301.6 20.2 209 1-222 37-257 (316)
115 TIGR01257 rim_protein retinal- 100.0 4.3E-34 9.2E-39 344.9 42.0 186 1-202 962-1151(2272)
116 PRK13636 cbiO cobalt transport 100.0 3.7E-36 8.1E-41 306.3 20.8 182 1-196 38-228 (283)
117 PRK09473 oppD oligopeptide tra 100.0 4.8E-36 1E-40 311.3 21.7 189 1-196 48-248 (330)
118 TIGR03740 galliderm_ABC gallid 100.0 5E-36 1.1E-40 294.9 20.7 178 1-196 32-210 (223)
119 PRK13635 cbiO cobalt transport 100.0 4E-36 8.6E-41 305.5 20.6 181 1-196 39-226 (279)
120 PRK13649 cbiO cobalt transport 100.0 5.2E-36 1.1E-40 304.9 21.5 181 1-196 39-231 (280)
121 COG0410 LivF ABC-type branched 100.0 1.8E-36 3.8E-41 289.5 16.8 181 1-196 35-223 (237)
122 TIGR03411 urea_trans_UrtD urea 100.0 4.4E-36 9.5E-41 298.8 20.5 184 1-196 34-228 (242)
123 PRK13646 cbiO cobalt transport 100.0 3E-36 6.5E-41 307.5 19.6 181 1-196 39-232 (286)
124 PRK11614 livF leucine/isoleuci 100.0 2.3E-36 4.9E-41 300.0 18.2 180 1-196 37-223 (237)
125 TIGR01277 thiQ thiamine ABC tr 100.0 7.1E-36 1.5E-40 291.8 21.4 179 1-193 30-212 (213)
126 PRK10584 putative ABC transpor 100.0 6.9E-36 1.5E-40 294.8 21.4 175 1-190 42-226 (228)
127 TIGR02770 nickel_nikD nickel i 100.0 3.5E-36 7.7E-41 297.4 19.4 189 1-196 18-212 (230)
128 COG4152 ABC-type uncharacteriz 100.0 7.9E-37 1.7E-41 292.0 13.9 187 1-202 34-221 (300)
129 TIGR01978 sufC FeS assembly AT 100.0 5.8E-36 1.3E-40 298.0 20.5 185 1-196 32-231 (243)
130 PRK13638 cbiO cobalt transport 100.0 5.9E-36 1.3E-40 303.1 20.7 182 1-196 33-222 (271)
131 TIGR03005 ectoine_ehuA ectoine 100.0 6E-36 1.3E-40 299.7 20.4 183 1-196 32-233 (252)
132 TIGR03771 anch_rpt_ABC anchore 100.0 5.9E-36 1.3E-40 294.5 19.7 184 1-196 12-198 (223)
133 PRK14247 phosphate ABC transpo 100.0 9.4E-36 2E-40 297.9 21.1 192 1-196 35-231 (250)
134 PRK13548 hmuV hemin importer A 100.0 7.1E-36 1.5E-40 300.4 20.1 182 1-196 34-227 (258)
135 PRK13648 cbiO cobalt transport 100.0 1.1E-35 2.5E-40 300.6 21.5 181 1-196 41-228 (269)
136 TIGR03410 urea_trans_UrtE urea 100.0 8.4E-36 1.8E-40 294.5 19.9 179 1-196 32-218 (230)
137 TIGR02769 nickel_nikE nickel i 100.0 8.6E-36 1.9E-40 300.9 20.4 183 1-196 43-237 (265)
138 PRK11022 dppD dipeptide transp 100.0 1.2E-35 2.6E-40 308.0 21.7 190 1-196 39-240 (326)
139 PRK14267 phosphate ABC transpo 100.0 1E-35 2.2E-40 298.3 20.1 192 1-196 36-234 (253)
140 PRK11231 fecE iron-dicitrate t 100.0 6.4E-36 1.4E-40 300.1 18.7 184 1-196 34-224 (255)
141 PRK14242 phosphate transporter 100.0 1.4E-35 3.1E-40 297.1 21.2 190 1-196 38-234 (253)
142 PRK13652 cbiO cobalt transport 100.0 1.2E-35 2.6E-40 301.7 20.6 182 1-196 36-224 (277)
143 cd03299 ABC_ModC_like Archeal 100.0 1.3E-35 2.9E-40 294.3 20.4 182 1-196 31-216 (235)
144 cd03267 ABC_NatA_like Similar 100.0 1.7E-35 3.8E-40 293.7 21.1 178 1-192 53-236 (236)
145 PRK13644 cbiO cobalt transport 100.0 1.1E-35 2.3E-40 301.6 20.0 181 1-196 34-221 (274)
146 PRK13549 xylose transporter AT 100.0 1.2E-35 2.6E-40 326.1 21.8 188 1-197 37-230 (506)
147 PRK13640 cbiO cobalt transport 100.0 1.4E-35 3.1E-40 301.9 20.5 184 1-196 39-229 (282)
148 PRK13639 cbiO cobalt transport 100.0 2E-35 4.2E-40 299.9 21.4 182 1-196 34-223 (275)
149 TIGR00968 3a0106s01 sulfate AB 100.0 1.5E-35 3.3E-40 294.2 20.2 182 1-196 32-217 (237)
150 PRK09984 phosphonate/organopho 100.0 1.2E-35 2.6E-40 299.4 19.6 188 1-196 36-239 (262)
151 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-35 2.3E-40 298.7 19.2 185 1-196 33-223 (256)
152 PRK14273 phosphate ABC transpo 100.0 1.5E-35 3.3E-40 297.2 20.1 190 1-196 39-235 (254)
153 PRK13633 cobalt transporter AT 100.0 1.7E-35 3.6E-40 301.1 20.5 181 1-196 42-230 (280)
154 PRK13632 cbiO cobalt transport 100.0 1.5E-35 3.2E-40 300.1 19.8 181 1-196 41-228 (271)
155 PRK15093 antimicrobial peptide 100.0 2.2E-35 4.8E-40 306.7 21.2 192 1-196 39-245 (330)
156 PRK10253 iron-enterobactin tra 100.0 1.4E-35 3E-40 299.4 19.2 185 1-196 39-230 (265)
157 PRK10575 iron-hydroxamate tran 100.0 1.3E-35 2.8E-40 299.6 18.7 185 1-196 43-234 (265)
158 cd03300 ABC_PotA_N PotA is an 100.0 2.7E-35 5.8E-40 291.5 20.7 182 1-196 32-217 (232)
159 PRK10762 D-ribose transporter 100.0 2E-35 4.3E-40 324.1 21.7 185 1-196 36-227 (501)
160 PRK14268 phosphate ABC transpo 100.0 2.3E-35 4.9E-40 296.7 20.1 189 1-196 44-239 (258)
161 PRK14245 phosphate ABC transpo 100.0 3E-35 6.5E-40 294.3 20.7 187 1-196 35-231 (250)
162 COG4598 HisP ABC-type histidin 100.0 4.7E-36 1E-40 274.3 12.8 184 1-197 38-239 (256)
163 PRK14244 phosphate ABC transpo 100.0 2.8E-35 6.1E-40 294.7 19.7 191 1-196 37-234 (251)
164 COG4181 Predicted ABC-type tra 100.0 1.2E-35 2.7E-40 269.7 15.4 175 1-190 42-226 (228)
165 PRK15112 antimicrobial peptide 100.0 3.2E-35 6.9E-40 297.1 20.2 183 1-196 45-236 (267)
166 PRK14270 phosphate ABC transpo 100.0 4.5E-35 9.7E-40 293.3 20.7 190 1-196 36-232 (251)
167 PRK13645 cbiO cobalt transport 100.0 2.7E-35 5.9E-40 300.9 19.3 181 1-196 43-237 (289)
168 PRK09700 D-allose transporter 100.0 3.3E-35 7.1E-40 323.0 21.3 185 1-196 37-231 (510)
169 PRK14235 phosphate transporter 100.0 3.4E-35 7.4E-40 296.8 19.7 191 1-196 51-248 (267)
170 PRK14250 phosphate ABC transpo 100.0 3E-35 6.4E-40 292.9 18.5 177 1-196 35-218 (241)
171 PRK14269 phosphate ABC transpo 100.0 4.4E-35 9.6E-40 292.5 19.7 189 1-196 34-227 (246)
172 PRK14258 phosphate ABC transpo 100.0 7.7E-35 1.7E-39 293.3 21.5 191 1-196 39-242 (261)
173 PRK14256 phosphate ABC transpo 100.0 7.8E-35 1.7E-39 291.7 21.4 191 1-196 36-233 (252)
174 PRK13642 cbiO cobalt transport 100.0 6.1E-35 1.3E-39 296.5 20.8 181 1-196 39-226 (277)
175 PRK10744 pstB phosphate transp 100.0 4.9E-35 1.1E-39 294.6 19.7 190 1-196 45-241 (260)
176 PRK14241 phosphate transporter 100.0 6.1E-35 1.3E-39 293.5 20.2 191 1-196 36-239 (258)
177 PRK14272 phosphate ABC transpo 100.0 7.8E-35 1.7E-39 291.6 20.6 191 1-196 36-233 (252)
178 PRK03695 vitamin B12-transport 100.0 7.4E-35 1.6E-39 291.3 20.4 180 1-196 28-219 (248)
179 TIGR03608 L_ocin_972_ABC putat 100.0 6.3E-35 1.4E-39 283.3 19.3 168 1-183 30-206 (206)
180 PRK14239 phosphate transporter 100.0 7.9E-35 1.7E-39 291.5 20.5 188 1-196 37-233 (252)
181 PRK14262 phosphate ABC transpo 100.0 5.9E-35 1.3E-39 292.2 19.5 190 1-196 35-231 (250)
182 PRK14237 phosphate transporter 100.0 1E-34 2.2E-39 293.4 21.3 190 1-196 52-248 (267)
183 PRK14274 phosphate ABC transpo 100.0 7E-35 1.5E-39 293.2 19.9 190 1-196 44-240 (259)
184 PRK10982 galactose/methyl gala 100.0 7.7E-35 1.7E-39 318.7 21.7 185 1-196 30-220 (491)
185 COG1123 ATPase components of v 100.0 4.2E-35 9.1E-40 313.0 18.9 184 1-196 323-516 (539)
186 PRK14240 phosphate transporter 100.0 1E-34 2.2E-39 290.4 20.5 190 1-196 35-231 (250)
187 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-34 2.5E-39 318.1 22.3 188 1-196 33-227 (500)
188 PRK14249 phosphate ABC transpo 100.0 1.2E-34 2.6E-39 290.2 20.4 190 1-196 36-232 (251)
189 TIGR02982 heterocyst_DevA ABC 100.0 1.1E-34 2.5E-39 284.7 19.8 174 1-188 37-219 (220)
190 cd03233 ABC_PDR_domain1 The pl 100.0 1.2E-34 2.6E-39 281.0 19.0 156 1-192 39-202 (202)
191 PRK11701 phnK phosphonate C-P 100.0 1.5E-34 3.3E-39 290.6 20.3 183 1-196 38-238 (258)
192 PRK14248 phosphate ABC transpo 100.0 1.4E-34 3E-39 292.6 20.0 185 1-196 53-249 (268)
193 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-34 2.6E-39 318.3 21.1 178 1-196 43-226 (510)
194 PRK13547 hmuV hemin importer A 100.0 1.1E-34 2.4E-39 293.6 19.2 189 1-196 33-241 (272)
195 COG1123 ATPase components of v 100.0 1.2E-34 2.7E-39 309.4 20.3 190 1-197 41-242 (539)
196 PRK10261 glutathione transport 100.0 1.6E-34 3.5E-39 324.0 22.3 184 1-196 356-550 (623)
197 COG4559 ABC-type hemin transpo 100.0 5.2E-35 1.1E-39 274.4 15.1 185 1-197 33-228 (259)
198 PRK14259 phosphate ABC transpo 100.0 1.3E-34 2.8E-39 293.0 19.2 188 1-196 45-250 (269)
199 PRK14253 phosphate ABC transpo 100.0 1.9E-34 4.1E-39 288.3 20.0 190 1-196 35-230 (249)
200 PRK14251 phosphate ABC transpo 100.0 2.2E-34 4.8E-39 288.2 20.3 190 1-196 36-232 (251)
201 PRK11288 araG L-arabinose tran 100.0 2E-34 4.3E-39 316.2 21.7 183 1-194 36-224 (501)
202 PRK14271 phosphate ABC transpo 100.0 3E-34 6.4E-39 291.3 21.4 190 1-196 53-248 (276)
203 PRK10419 nikE nickel transport 100.0 3.5E-34 7.7E-39 289.6 21.5 184 1-196 44-238 (268)
204 PRK14236 phosphate transporter 100.0 2.2E-34 4.7E-39 291.7 20.0 190 1-196 57-253 (272)
205 cd03252 ABCC_Hemolysin The ABC 100.0 3.8E-35 8.2E-40 291.2 14.1 177 1-196 34-222 (237)
206 PRK10418 nikD nickel transport 100.0 2.4E-34 5.3E-39 288.5 19.9 187 1-196 35-227 (254)
207 cd03213 ABCG_EPDR ABCG transpo 100.0 2.5E-34 5.4E-39 277.0 19.1 150 1-192 41-194 (194)
208 COG4161 ArtP ABC-type arginine 100.0 1.1E-34 2.3E-39 261.1 14.9 183 1-196 34-227 (242)
209 COG4988 CydD ABC-type transpor 100.0 1.5E-34 3.2E-39 307.7 18.4 177 1-196 353-540 (559)
210 PRK14260 phosphate ABC transpo 100.0 2.8E-34 6E-39 288.9 19.4 190 1-196 39-240 (259)
211 PRK14261 phosphate ABC transpo 100.0 4.1E-34 8.8E-39 286.7 20.5 190 1-196 38-234 (253)
212 COG2274 SunT ABC-type bacterio 100.0 3.5E-35 7.5E-40 328.4 14.0 179 1-196 505-693 (709)
213 PRK09700 D-allose transporter 100.0 2.9E-34 6.2E-39 315.6 21.0 185 1-196 295-495 (510)
214 cd03232 ABC_PDR_domain2 The pl 100.0 2.5E-34 5.5E-39 276.5 18.0 150 1-192 39-192 (192)
215 cd03251 ABCC_MsbA MsbA is an e 100.0 7.6E-35 1.6E-39 288.4 14.4 177 1-196 34-222 (234)
216 PRK14257 phosphate ABC transpo 100.0 4.7E-34 1E-38 296.1 21.0 190 1-196 114-310 (329)
217 PRK14275 phosphate ABC transpo 100.0 3.8E-34 8.3E-39 291.9 20.0 185 1-196 71-267 (286)
218 PRK14255 phosphate ABC transpo 100.0 6.4E-34 1.4E-38 285.0 20.9 190 1-196 37-233 (252)
219 PRK11174 cysteine/glutathione 100.0 9.6E-35 2.1E-39 324.7 16.5 178 1-196 382-569 (588)
220 PRK10762 D-ribose transporter 100.0 6.4E-34 1.4E-38 312.1 22.6 185 1-196 284-481 (501)
221 CHL00131 ycf16 sulfate ABC tra 100.0 8E-34 1.7E-38 284.2 21.4 185 1-196 39-238 (252)
222 PRK14238 phosphate transporter 100.0 4.7E-34 1E-38 289.1 19.8 190 1-196 56-252 (271)
223 TIGR01257 rim_protein retinal- 100.0 2.3E-34 5E-39 347.2 20.3 188 1-203 1971-2162(2272)
224 cd03245 ABCC_bacteriocin_expor 100.0 1.8E-34 3.8E-39 283.1 15.9 174 1-192 36-220 (220)
225 PRK13549 xylose transporter AT 100.0 5.4E-34 1.2E-38 313.1 21.5 185 1-196 294-491 (506)
226 PRK14263 phosphate ABC transpo 100.0 5.4E-34 1.2E-38 287.1 19.7 188 1-196 40-242 (261)
227 TIGR02323 CP_lyasePhnK phospho 100.0 6.5E-34 1.4E-38 285.1 19.8 183 1-196 35-235 (253)
228 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.1E-34 2.4E-39 288.1 13.9 177 1-196 35-223 (238)
229 PRK15134 microcin C ABC transp 100.0 5.6E-34 1.2E-38 314.6 20.5 183 1-196 318-512 (529)
230 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.2E-33 2.7E-38 278.2 20.7 171 1-192 54-224 (224)
231 TIGR01166 cbiO cobalt transpor 100.0 6.5E-34 1.4E-38 273.0 18.3 156 1-170 24-188 (190)
232 PRK14266 phosphate ABC transpo 100.0 6.4E-34 1.4E-38 284.7 18.7 190 1-196 35-231 (250)
233 TIGR03269 met_CoM_red_A2 methy 100.0 4.2E-34 9.1E-39 315.0 19.0 186 1-196 316-514 (520)
234 PRK11288 araG L-arabinose tran 100.0 6.2E-34 1.3E-38 312.2 20.3 185 1-196 285-482 (501)
235 PRK15439 autoinducer 2 ABC tra 100.0 7.9E-34 1.7E-38 311.9 21.0 185 1-196 295-489 (510)
236 PRK14246 phosphate ABC transpo 100.0 8.7E-34 1.9E-38 285.0 19.5 191 1-196 42-238 (257)
237 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-34 3E-39 285.6 13.4 177 1-196 35-223 (229)
238 PRK15056 manganese/iron transp 100.0 6.3E-34 1.4E-38 288.4 18.5 184 1-196 39-227 (272)
239 PRK15134 microcin C ABC transp 100.0 6.8E-34 1.5E-38 313.9 20.3 191 1-196 41-243 (529)
240 PRK10261 glutathione transport 100.0 6.5E-34 1.4E-38 319.1 20.2 186 1-196 48-255 (623)
241 KOG0055 Multidrug/pheromone ex 100.0 2E-32 4.3E-37 311.6 32.3 181 1-196 385-573 (1228)
242 PRK14254 phosphate ABC transpo 100.0 1.4E-33 3E-38 287.6 20.4 188 1-196 71-266 (285)
243 PRK14265 phosphate ABC transpo 100.0 1.2E-33 2.5E-38 286.7 19.4 188 1-196 52-255 (274)
244 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-33 2.6E-38 310.0 21.0 185 1-196 292-489 (500)
245 TIGR03269 met_CoM_red_A2 methy 100.0 7.9E-34 1.7E-38 312.8 19.4 182 1-196 32-255 (520)
246 PRK14243 phosphate transporter 100.0 1.3E-33 2.8E-38 284.9 19.4 188 1-196 42-245 (264)
247 PRK13538 cytochrome c biogenes 100.0 1.3E-33 2.8E-38 274.0 18.7 166 1-183 33-202 (204)
248 cd03230 ABC_DR_subfamily_A Thi 100.0 8.6E-34 1.9E-38 268.3 16.8 138 1-188 32-173 (173)
249 PRK11176 lipid transporter ATP 100.0 4.5E-34 9.8E-39 319.0 17.1 178 1-196 375-564 (582)
250 PRK09580 sufC cysteine desulfu 100.0 2.4E-33 5.1E-38 280.1 20.3 185 1-196 33-232 (248)
251 PRK13543 cytochrome c biogenes 100.0 1.7E-33 3.7E-38 275.3 18.8 168 1-185 43-212 (214)
252 cd03215 ABC_Carb_Monos_II This 100.0 1.4E-33 3E-38 269.0 17.4 142 1-188 32-182 (182)
253 PRK10790 putative multidrug tr 100.0 9E-34 1.9E-38 317.1 18.6 176 1-196 373-560 (592)
254 COG1129 MglA ABC-type sugar tr 100.0 2.3E-33 4.9E-38 297.9 20.5 185 1-196 40-232 (500)
255 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.5E-34 1.6E-38 322.8 17.8 174 1-196 485-670 (686)
256 PRK10247 putative ABC transpor 100.0 1.7E-33 3.7E-38 277.4 17.6 175 1-193 39-221 (225)
257 PRK14264 phosphate ABC transpo 100.0 3.4E-33 7.4E-38 287.4 20.2 192 1-196 77-286 (305)
258 cd03231 ABC_CcmA_heme_exporter 100.0 2.7E-33 5.9E-38 271.2 18.3 163 1-183 32-198 (201)
259 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.9E-33 1.1E-37 277.6 20.2 163 1-188 31-194 (246)
260 cd03253 ABCC_ATM1_transporter 100.0 8.3E-34 1.8E-38 281.3 14.4 177 1-196 33-221 (236)
261 PRK13546 teichoic acids export 100.0 8.5E-33 1.8E-37 278.6 21.5 174 1-196 56-229 (264)
262 COG1132 MdlB ABC-type multidru 100.0 6.6E-34 1.4E-38 316.6 14.8 179 1-196 361-549 (567)
263 cd03248 ABCC_TAP TAP, the Tran 100.0 6E-34 1.3E-38 280.6 12.8 174 1-188 46-226 (226)
264 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.6E-33 7.9E-38 270.2 17.9 149 1-194 32-189 (200)
265 TIGR02324 CP_lyasePhnL phospho 100.0 4.9E-33 1.1E-37 273.7 19.1 171 1-184 40-223 (224)
266 PRK14252 phosphate ABC transpo 100.0 5E-33 1.1E-37 280.7 19.2 190 1-196 48-246 (265)
267 cd03244 ABCC_MRP_domain2 Domai 100.0 2.5E-33 5.5E-38 275.1 16.3 173 1-193 36-220 (221)
268 COG4604 CeuD ABC-type enteroch 100.0 4.1E-34 8.9E-39 265.4 9.8 185 1-197 33-223 (252)
269 TIGR01189 ccmA heme ABC export 100.0 5.4E-33 1.2E-37 268.4 18.0 162 1-182 32-197 (198)
270 TIGR01842 type_I_sec_PrtD type 100.0 1.8E-33 3.9E-38 311.6 16.7 180 1-196 350-539 (544)
271 COG4172 ABC-type uncharacteriz 100.0 4.2E-33 9.1E-38 282.4 17.6 184 1-196 319-513 (534)
272 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9.2E-34 2E-38 323.3 14.5 175 1-196 511-697 (710)
273 cd03229 ABC_Class3 This class 100.0 3.9E-33 8.5E-38 265.0 16.4 139 1-187 32-178 (178)
274 PRK11160 cysteine/glutathione 100.0 2.2E-33 4.7E-38 312.6 16.6 177 1-196 372-559 (574)
275 cd03246 ABCC_Protease_Secretio 100.0 5.8E-33 1.3E-37 262.6 16.0 135 1-188 34-173 (173)
276 TIGR01193 bacteriocin_ABC ABC- 100.0 2.7E-33 5.8E-38 319.4 16.3 177 1-196 506-694 (708)
277 PRK13545 tagH teichoic acids e 100.0 1.5E-32 3.2E-37 294.6 20.6 174 1-196 56-229 (549)
278 cd03369 ABCC_NFT1 Domain 2 of 100.0 9.8E-33 2.1E-37 268.4 17.6 163 1-194 40-207 (207)
279 PRK10535 macrolide transporter 100.0 8.9E-32 1.9E-36 303.0 28.0 181 1-196 40-229 (648)
280 PRK09544 znuC high-affinity zi 100.0 8.7E-33 1.9E-37 276.7 17.4 168 1-196 36-206 (251)
281 PRK13539 cytochrome c biogenes 100.0 1.1E-32 2.5E-37 268.1 17.6 165 1-185 34-200 (207)
282 PRK13657 cyclic beta-1,2-gluca 100.0 3.6E-33 7.8E-38 312.0 15.8 177 1-196 367-555 (588)
283 COG4987 CydC ABC-type transpor 100.0 1.5E-33 3.3E-38 295.6 11.7 177 1-196 370-558 (573)
284 PRK10938 putative molybdenum t 100.0 5.4E-33 1.2E-37 304.1 16.5 174 1-196 35-221 (490)
285 TIGR03375 type_I_sec_LssB type 100.0 3.1E-33 6.8E-38 318.1 15.2 177 1-196 497-685 (694)
286 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.6E-33 1.4E-37 280.6 15.8 175 1-196 36-222 (275)
287 KOG0058 Peptide exporter, ABC 100.0 4.4E-33 9.6E-38 301.6 15.2 179 1-196 500-688 (716)
288 cd03247 ABCC_cytochrome_bd The 100.0 7.9E-33 1.7E-37 262.8 15.1 141 1-192 34-178 (178)
289 TIGR02203 MsbA_lipidA lipid A 100.0 7.5E-33 1.6E-37 308.4 17.3 178 1-196 364-553 (571)
290 COG3845 ABC-type uncharacteriz 100.0 1.9E-32 4.2E-37 285.4 19.1 182 1-193 36-223 (501)
291 TIGR00958 3a01208 Conjugate Tr 100.0 4.1E-33 8.8E-38 317.4 15.3 175 1-196 513-699 (711)
292 KOG0057 Mitochondrial Fe/S clu 100.0 2.9E-33 6.4E-38 293.7 11.9 178 1-196 384-571 (591)
293 PRK13540 cytochrome c biogenes 100.0 3.3E-32 7.1E-37 263.4 17.1 160 1-180 33-196 (200)
294 TIGR01846 type_I_sec_HlyB type 100.0 9.9E-33 2.1E-37 314.0 15.5 179 1-196 489-677 (694)
295 cd03290 ABCC_SUR1_N The SUR do 100.0 4.3E-32 9.2E-37 266.0 17.5 168 1-187 33-218 (218)
296 PRK10789 putative multidrug tr 100.0 1.5E-32 3.3E-37 305.7 16.1 177 1-196 347-535 (569)
297 cd03250 ABCC_MRP_domain1 Domai 100.0 2.5E-32 5.4E-37 265.0 15.5 160 1-187 37-204 (204)
298 cd03288 ABCC_SUR2 The SUR doma 100.0 1.9E-32 4.1E-37 275.3 14.9 176 1-196 53-240 (257)
299 COG4619 ABC-type uncharacteriz 100.0 7.1E-33 1.5E-37 251.0 10.5 173 1-189 35-213 (223)
300 PRK10982 galactose/methyl gala 100.0 8.7E-32 1.9E-36 294.6 20.3 185 1-196 280-477 (491)
301 cd03214 ABC_Iron-Siderophores_ 100.0 2.6E-32 5.7E-37 259.8 14.1 144 1-192 31-180 (180)
302 TIGR02204 MsbA_rel ABC transpo 100.0 1.7E-32 3.6E-37 306.0 14.5 177 1-196 372-560 (576)
303 TIGR01192 chvA glucan exporter 100.0 2.8E-32 6.1E-37 304.2 16.3 179 1-196 367-555 (585)
304 PRK15177 Vi polysaccharide exp 100.0 9.6E-32 2.1E-36 262.8 17.0 177 1-204 19-196 (213)
305 COG4618 ArpD ABC-type protease 100.0 2.1E-32 4.5E-37 284.8 12.3 181 1-197 368-558 (580)
306 PRK13541 cytochrome c biogenes 100.0 1.3E-31 2.7E-36 258.3 16.5 160 1-180 32-192 (195)
307 cd03228 ABCC_MRP_Like The MRP 100.0 9.9E-32 2.2E-36 253.7 15.2 133 1-187 34-171 (171)
308 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.5E-31 5.4E-36 270.1 17.4 168 1-196 69-244 (282)
309 COG4586 ABC-type uncharacteriz 100.0 8.5E-32 1.8E-36 261.4 12.7 187 1-202 56-248 (325)
310 cd03223 ABCD_peroxisomal_ALDP 100.0 4.5E-31 9.8E-36 248.1 16.4 131 1-186 33-163 (166)
311 PTZ00265 multidrug resistance 100.0 7.6E-32 1.6E-36 324.5 13.6 185 1-196 1200-1449(1466)
312 COG4608 AppF ABC-type oligopep 100.0 3.1E-31 6.8E-36 260.4 15.2 167 1-221 45-212 (268)
313 cd03216 ABC_Carb_Monos_I This 100.0 6.4E-31 1.4E-35 246.3 16.6 125 1-190 32-162 (163)
314 KOG0055 Multidrug/pheromone ex 100.0 1.8E-31 3.9E-36 303.9 15.2 181 1-196 1022-1210(1228)
315 PRK15064 ABC transporter ATP-b 100.0 5.9E-31 1.3E-35 290.6 19.0 177 1-196 33-239 (530)
316 cd03236 ABC_RNaseL_inhibitor_d 100.0 7.4E-31 1.6E-35 263.1 17.9 171 1-192 32-220 (255)
317 PRK10938 putative molybdenum t 100.0 3.9E-31 8.5E-36 289.4 17.3 181 1-193 292-486 (490)
318 PRK10522 multidrug transporter 100.0 6.1E-31 1.3E-35 291.6 18.4 170 1-193 355-532 (547)
319 PRK13409 putative ATPase RIL; 100.0 1.1E-30 2.4E-35 290.0 19.8 168 1-196 371-539 (590)
320 COG0396 sufC Cysteine desulfur 100.0 1.7E-30 3.7E-35 247.4 18.2 198 1-209 36-242 (251)
321 TIGR02857 CydD thiol reductant 100.0 3.3E-31 7.1E-36 292.7 14.2 164 1-183 354-529 (529)
322 TIGR02868 CydC thiol reductant 100.0 3E-31 6.5E-36 293.0 13.7 152 1-169 367-529 (529)
323 PRK11819 putative ABC transpor 100.0 1.3E-30 2.9E-35 289.1 18.2 175 1-196 39-247 (556)
324 COG1119 ModF ABC-type molybden 100.0 5.1E-31 1.1E-35 253.9 12.8 182 1-193 63-256 (257)
325 PRK15064 ABC transporter ATP-b 100.0 1.5E-30 3.3E-35 287.3 17.9 168 1-196 351-522 (530)
326 KOG0059 Lipid exporter ABCA1 a 100.0 6E-31 1.3E-35 304.4 14.9 189 1-204 597-791 (885)
327 PLN03232 ABC transporter C fam 100.0 8.5E-31 1.8E-35 317.7 16.8 176 1-196 1268-1455(1495)
328 COG4674 Uncharacterized ABC-ty 100.0 3.1E-31 6.7E-36 245.9 9.7 184 1-196 37-232 (249)
329 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.3E-30 4.9E-35 287.3 18.1 171 1-191 374-551 (555)
330 PLN03130 ABC transporter C fam 100.0 1.5E-30 3.3E-35 316.0 17.8 177 1-197 1271-1459(1622)
331 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.1E-30 4.6E-35 287.4 17.3 175 1-196 37-245 (552)
332 COG1101 PhnK ABC-type uncharac 100.0 2.3E-30 4.9E-35 243.7 14.8 182 1-193 38-232 (263)
333 COG4172 ABC-type uncharacteriz 100.0 4.4E-30 9.5E-35 260.6 16.9 191 1-196 42-244 (534)
334 TIGR00957 MRP_assoc_pro multi 100.0 4.6E-30 9.9E-35 311.8 17.5 176 1-196 1318-1505(1522)
335 PTZ00265 multidrug resistance 100.0 4.7E-30 1E-34 309.1 17.3 177 1-186 417-655 (1466)
336 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-29 2.7E-34 240.1 16.4 127 1-196 31-160 (177)
337 PTZ00243 ABC transporter; Prov 100.0 5.2E-30 1.1E-34 310.8 17.2 176 1-196 1342-1530(1560)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-29 3.8E-34 280.1 18.5 166 1-190 354-521 (552)
339 PRK11819 putative ABC transpor 100.0 2.7E-29 5.9E-34 278.7 18.9 164 1-189 356-522 (556)
340 cd03238 ABC_UvrA The excision 100.0 3.6E-29 7.7E-34 236.7 16.8 140 1-190 27-168 (176)
341 TIGR01271 CFTR_protein cystic 100.0 2.2E-29 4.7E-34 305.1 17.9 175 1-196 1251-1437(1490)
342 PRK10636 putative ABC transpor 100.0 3.3E-29 7.1E-34 281.6 16.7 167 1-196 344-514 (638)
343 PRK13409 putative ATPase RIL; 100.0 4.1E-29 8.8E-34 277.5 15.4 162 1-186 105-287 (590)
344 PRK11147 ABC transporter ATPas 100.0 8.7E-29 1.9E-33 278.5 18.0 166 1-191 351-519 (635)
345 TIGR00954 3a01203 Peroxysomal 100.0 7.1E-29 1.5E-33 279.8 16.2 165 1-184 484-652 (659)
346 COG4133 CcmA ABC-type transpor 100.0 9.6E-29 2.1E-33 228.7 13.6 155 1-171 34-192 (209)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.7E-28 3.7E-33 225.2 14.8 113 1-187 32-144 (144)
348 COG4167 SapF ABC-type antimicr 100.0 4.7E-28 1E-32 222.4 17.2 185 1-197 45-237 (267)
349 KOG0056 Heavy metal exporter H 100.0 6.5E-30 1.4E-34 263.5 5.5 181 1-196 570-758 (790)
350 PLN03073 ABC transporter F fam 100.0 2.6E-28 5.6E-33 275.8 18.8 169 1-195 541-710 (718)
351 PLN03130 ABC transporter C fam 100.0 1.4E-28 3E-33 298.9 16.3 168 1-196 649-825 (1622)
352 PLN03232 ABC transporter C fam 100.0 1.8E-28 3.8E-33 297.6 17.0 169 1-196 649-825 (1495)
353 COG4136 ABC-type uncharacteriz 100.0 1.5E-28 3.2E-33 219.1 11.0 158 1-169 34-195 (213)
354 PRK10636 putative ABC transpor 100.0 4.7E-28 1E-32 272.2 17.5 174 1-195 33-232 (638)
355 COG1134 TagH ABC-type polysacc 100.0 9.2E-28 2E-32 231.7 16.1 182 1-204 59-240 (249)
356 TIGR01271 CFTR_protein cystic 100.0 9.7E-28 2.1E-32 290.8 18.6 170 1-196 458-633 (1490)
357 TIGR00957 MRP_assoc_pro multi 100.0 5.4E-28 1.2E-32 293.7 16.3 173 1-196 670-847 (1522)
358 PRK11147 ABC transporter ATPas 100.0 1.5E-27 3.2E-32 268.5 17.9 173 1-195 35-239 (635)
359 cd00267 ABC_ATPase ABC (ATP-bi 99.9 2E-27 4.3E-32 221.0 15.6 122 1-187 31-157 (157)
360 COG4107 PhnK ABC-type phosphon 99.9 3.3E-27 7.2E-32 215.2 15.5 181 1-197 38-239 (258)
361 COG5265 ATM1 ABC-type transpor 99.9 2.1E-28 4.5E-33 249.9 8.3 179 1-196 295-483 (497)
362 PTZ00243 ABC transporter; Prov 99.9 3.1E-27 6.6E-32 286.8 16.5 169 1-196 692-867 (1560)
363 COG0488 Uup ATPase components 99.9 6.4E-27 1.4E-31 254.4 15.5 172 1-193 35-234 (530)
364 cd03271 ABC_UvrA_II The excisi 99.9 3.3E-26 7.2E-31 229.1 17.7 135 45-194 118-261 (261)
365 cd03270 ABC_UvrA_I The excisio 99.9 3.6E-25 7.9E-30 218.3 19.4 101 86-192 118-226 (226)
366 cd03278 ABC_SMC_barmotin Barmo 99.9 5.8E-26 1.3E-30 219.2 11.1 152 1-184 28-189 (197)
367 COG4138 BtuD ABC-type cobalami 99.9 7E-27 1.5E-31 213.3 4.1 177 1-197 31-219 (248)
368 PF00005 ABC_tran: ABC transpo 99.9 5E-26 1.1E-30 206.2 9.5 116 1-138 17-137 (137)
369 KOG0054 Multidrug resistance-a 99.9 1.2E-23 2.5E-28 245.4 31.6 169 1-196 553-728 (1381)
370 cd03273 ABC_SMC2_euk Eukaryoti 99.9 7.3E-26 1.6E-30 226.8 8.2 176 1-184 31-242 (251)
371 PLN03073 ABC transporter F fam 99.9 1.6E-25 3.5E-30 253.2 11.5 106 82-195 321-427 (718)
372 COG1129 MglA ABC-type sugar tr 99.9 3.2E-24 6.8E-29 228.3 19.2 185 2-196 292-487 (500)
373 COG4778 PhnL ABC-type phosphon 99.9 4.1E-25 8.9E-30 201.0 10.6 171 2-185 44-227 (235)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.8E-25 1E-29 219.5 11.9 173 1-184 29-234 (243)
375 cd03240 ABC_Rad50 The catalyti 99.9 1.7E-24 3.6E-29 210.2 10.5 152 1-186 28-199 (204)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.1E-25 4.6E-30 217.7 0.8 162 1-185 31-204 (212)
377 cd03279 ABC_sbcCD SbcCD and ot 99.9 7.3E-24 1.6E-28 207.2 10.4 163 1-187 34-210 (213)
378 COG0488 Uup ATPase components 99.9 5.7E-23 1.2E-27 223.6 17.0 161 1-190 354-515 (530)
379 KOG0054 Multidrug resistance-a 99.9 1.7E-23 3.7E-28 244.0 13.6 176 1-196 1172-1359(1381)
380 PF01061 ABC2_membrane: ABC-2 99.9 1E-24 2.2E-29 210.0 0.8 209 285-496 1-210 (210)
381 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.5E-22 3.3E-27 202.3 8.0 171 1-184 28-232 (247)
382 PRK00635 excinuclease ABC subu 99.9 2E-21 4.3E-26 232.3 18.8 136 54-196 759-903 (1809)
383 cd03276 ABC_SMC6_euk Eukaryoti 99.9 8.2E-22 1.8E-26 190.5 11.7 158 1-187 27-192 (198)
384 COG4178 ABC-type uncharacteriz 99.8 5.2E-21 1.1E-25 207.6 12.9 161 1-183 425-586 (604)
385 PRK00349 uvrA excinuclease ABC 99.8 2.2E-20 4.8E-25 214.9 18.6 124 58-196 792-924 (943)
386 COG3845 ABC-type uncharacteriz 99.8 1.7E-20 3.7E-25 196.3 16.0 185 2-196 291-489 (501)
387 COG1245 Predicted ATPase, RNas 99.8 1.4E-20 3.1E-25 194.0 13.9 157 1-184 373-530 (591)
388 COG4615 PvdE ABC-type sideroph 99.8 1.8E-21 3.9E-26 197.5 5.3 172 1-194 355-532 (546)
389 TIGR00630 uvra excinuclease AB 99.8 7.2E-20 1.6E-24 210.4 17.9 125 57-196 789-922 (924)
390 KOG0927 Predicted transporter 99.8 5.8E-20 1.3E-24 193.3 9.3 162 1-189 422-585 (614)
391 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2.8E-19 6.1E-24 174.7 12.1 82 105-187 122-211 (213)
392 KOG0927 Predicted transporter 99.8 2.7E-19 5.8E-24 188.3 9.4 108 80-195 196-305 (614)
393 COG4170 SapD ABC-type antimicr 99.8 2.3E-19 4.9E-24 168.6 7.2 192 1-196 39-245 (330)
394 cd03239 ABC_SMC_head The struc 99.8 1.7E-18 3.8E-23 164.4 13.2 74 110-185 95-172 (178)
395 COG1245 Predicted ATPase, RNas 99.8 7.1E-19 1.5E-23 181.6 8.9 159 1-185 106-288 (591)
396 KOG0062 ATPase component of AB 99.8 4.5E-18 9.7E-23 178.2 13.1 164 1-190 396-559 (582)
397 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.1E-18 4.5E-23 167.0 9.0 83 107-192 89-172 (200)
398 KOG0062 ATPase component of AB 99.8 1.3E-18 2.7E-23 182.3 7.9 165 1-192 112-278 (582)
399 KOG0060 Long-chain acyl-CoA tr 99.7 4.6E-18 1E-22 180.2 12.1 169 1-185 467-641 (659)
400 KOG0066 eIF2-interacting prote 99.7 7.3E-18 1.6E-22 172.7 10.8 142 1-170 619-762 (807)
401 PRK00349 uvrA excinuclease ABC 99.7 1.4E-17 2.9E-22 192.1 12.8 135 55-196 434-582 (943)
402 TIGR00630 uvra excinuclease AB 99.7 1.6E-17 3.4E-22 191.3 13.0 135 55-196 432-580 (924)
403 KOG2355 Predicted ABC-type tra 99.7 2.9E-17 6.3E-22 154.1 10.4 173 1-196 46-234 (291)
404 cd03227 ABC_Class2 ABC-type Cl 99.7 1.5E-17 3.2E-22 155.7 8.5 75 109-185 77-155 (162)
405 cd03241 ABC_RecN RecN ATPase i 99.7 6E-17 1.3E-21 164.6 11.9 76 108-186 169-248 (276)
406 cd03283 ABC_MutS-like MutS-lik 99.7 7.4E-17 1.6E-21 156.0 7.8 118 1-170 31-149 (199)
407 COG0178 UvrA Excinuclease ATPa 99.7 6.1E-16 1.3E-20 169.7 15.7 126 57-197 783-917 (935)
408 PRK00635 excinuclease ABC subu 99.6 1.4E-15 3E-20 182.8 14.0 135 55-196 424-569 (1809)
409 KOG0064 Peroxisomal long-chain 99.6 7E-16 1.5E-20 161.8 7.4 152 1-172 514-672 (728)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.6 3.6E-16 7.7E-21 153.7 4.8 97 86-194 74-176 (222)
411 cd03242 ABC_RecF RecF is a rec 99.6 6.1E-15 1.3E-19 149.4 13.4 78 106-188 180-269 (270)
412 cd03243 ABC_MutS_homologs The 99.6 8.5E-16 1.8E-20 148.9 6.1 85 109-196 91-176 (202)
413 TIGR02858 spore_III_AA stage I 99.5 2.2E-14 4.7E-19 144.6 9.2 132 1-196 117-266 (270)
414 COG2401 ABC-type ATPase fused 99.5 3.5E-14 7.5E-19 145.6 10.0 168 1-189 415-588 (593)
415 KOG0063 RNAse L inhibitor, ABC 99.5 4.6E-14 1E-18 145.1 9.0 157 1-183 373-530 (592)
416 KOG0066 eIF2-interacting prote 99.5 4E-15 8.6E-20 152.8 0.0 179 1-190 296-489 (807)
417 TIGR01247 drrB daunorubicin re 99.5 3.3E-12 7.2E-17 126.6 20.3 199 293-496 1-206 (236)
418 cd03284 ABC_MutS1 MutS1 homolo 99.4 3.2E-13 6.9E-18 132.3 9.3 139 1-196 36-178 (216)
419 smart00534 MUTSac ATPase domai 99.4 2.1E-13 4.6E-18 130.4 7.2 82 107-191 59-142 (185)
420 PF02463 SMC_N: RecF/RecN/SMC 99.4 3.4E-13 7.4E-18 132.2 3.7 87 83-183 121-211 (220)
421 TIGR03861 phenyl_ABC_PedC alco 99.4 1.2E-10 2.7E-15 116.7 22.3 206 284-493 1-219 (253)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.3 1.3E-12 2.8E-17 126.9 6.1 63 107-170 89-152 (204)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.3 6.3E-12 1.4E-16 122.9 9.5 59 112-170 93-155 (213)
424 TIGR01291 nodJ ABC-2 type tran 99.3 3.2E-10 7E-15 113.8 22.0 202 287-494 7-216 (253)
425 TIGR00634 recN DNA repair prot 99.3 4.8E-12 1E-16 141.0 9.3 77 108-187 439-519 (563)
426 TIGR00025 Mtu_efflux ABC trans 99.3 5E-10 1.1E-14 110.8 21.2 191 299-494 2-196 (232)
427 PRK10869 recombination and rep 99.3 1.2E-11 2.6E-16 136.9 10.1 76 108-186 429-508 (553)
428 PHA02562 46 endonuclease subun 99.3 8.9E-12 1.9E-16 139.0 8.8 79 106-188 465-555 (562)
429 TIGR00618 sbcc exonuclease Sbc 99.3 1.5E-11 3.2E-16 146.4 10.8 82 104-186 945-1036(1042)
430 PTZ00132 GTP-binding nuclear p 99.3 6.2E-12 1.4E-16 122.8 6.2 44 114-157 157-205 (215)
431 KOG0063 RNAse L inhibitor, ABC 99.2 1.5E-11 3.3E-16 126.8 7.7 96 84-185 193-288 (592)
432 TIGR03062 pip_yhgE_Cterm YhgE/ 99.2 2.5E-10 5.4E-15 110.9 13.5 120 375-498 57-176 (208)
433 TIGR01069 mutS2 MutS2 family p 99.2 3.8E-11 8.2E-16 137.3 6.9 64 107-171 383-447 (771)
434 COG0178 UvrA Excinuclease ATPa 99.1 3.3E-10 7.1E-15 125.3 13.6 136 55-197 426-575 (935)
435 PF13304 AAA_21: AAA domain; P 99.1 1.6E-10 3.5E-15 113.1 8.9 64 107-170 234-300 (303)
436 cd01124 KaiC KaiC is a circadi 99.1 6.6E-10 1.4E-14 105.6 12.1 81 104-184 66-163 (187)
437 PRK03918 chromosome segregatio 99.1 2.3E-10 4.9E-15 134.4 9.5 78 105-184 784-867 (880)
438 PRK15066 inner membrane transp 99.1 2.9E-08 6.3E-13 99.9 23.0 204 284-493 7-217 (257)
439 COG3910 Predicted ATPase [Gene 99.1 7.7E-10 1.7E-14 103.3 10.1 68 102-170 122-189 (233)
440 PRK10246 exonuclease subunit S 99.1 4.8E-10 1E-14 133.1 10.8 80 105-185 945-1032(1047)
441 PRK13695 putative NTPase; Prov 99.0 8.9E-10 1.9E-14 104.2 8.5 81 107-193 76-158 (174)
442 PRK00409 recombination and DNA 99.0 3.8E-10 8.3E-15 129.4 6.4 82 107-191 388-470 (782)
443 cd01128 rho_factor Transcripti 99.0 1.2E-09 2.7E-14 109.0 8.1 77 106-188 126-211 (249)
444 PRK01156 chromosome segregatio 99.0 1.9E-09 4E-14 126.9 10.6 77 106-184 798-883 (895)
445 PRK08533 flagellar accessory p 99.0 4.7E-09 1E-13 103.9 11.7 76 109-184 95-184 (230)
446 cd01120 RecA-like_NTPases RecA 98.9 3E-09 6.6E-14 97.8 7.2 64 109-172 67-140 (165)
447 TIGR02168 SMC_prok_B chromosom 98.9 2.6E-09 5.6E-14 128.8 7.8 77 105-184 1085-1165(1179)
448 TIGR00606 rad50 rad50. This fa 98.9 3.8E-09 8.2E-14 128.5 9.0 69 107-176 1197-1276(1311)
449 cd03287 ABC_MSH3_euk MutS3 hom 98.8 1.7E-08 3.7E-13 99.2 10.0 57 114-170 97-155 (222)
450 PRK00064 recF recombination pr 98.8 9.1E-09 2E-13 108.6 8.5 79 106-188 270-359 (361)
451 TIGR01248 drrC daunorubicin re 98.8 1.2E-07 2.6E-12 87.8 15.0 132 358-492 13-146 (152)
452 PRK13830 conjugal transfer pro 98.8 3.2E-08 7E-13 114.7 13.2 68 125-192 650-726 (818)
453 PRK02224 chromosome segregatio 98.8 1.3E-08 2.9E-13 119.5 9.2 78 106-185 778-868 (880)
454 PRK07721 fliI flagellum-specif 98.8 1E-07 2.2E-12 102.5 15.0 60 134-196 272-340 (438)
455 TIGR02788 VirB11 P-type DNA tr 98.8 2.4E-08 5.3E-13 103.1 9.9 67 120-196 211-278 (308)
456 TIGR02169 SMC_prok_A chromosom 98.8 1.1E-08 2.4E-13 123.4 8.4 76 106-184 1071-1150(1164)
457 cd01131 PilT Pilus retraction 98.7 7.8E-08 1.7E-12 93.0 9.1 57 119-184 66-122 (198)
458 cd01125 repA Hexameric Replica 98.6 1.1E-07 2.3E-12 94.7 8.9 130 1-170 7-160 (239)
459 cd03286 ABC_MSH6_euk MutS6 hom 98.6 3.5E-08 7.6E-13 96.7 4.8 57 114-170 96-154 (218)
460 PRK06067 flagellar accessory p 98.6 4.8E-07 1E-11 89.7 11.9 76 109-184 100-186 (234)
461 TIGR00611 recf recF protein. A 98.6 9.8E-08 2.1E-12 100.8 7.1 60 108-170 274-342 (365)
462 PRK14079 recF recombination pr 98.5 1.5E-07 3.3E-12 98.9 7.7 75 108-190 262-345 (349)
463 COG0842 ABC-type multidrug tra 98.5 3.6E-06 7.8E-11 84.3 17.4 136 362-499 116-252 (286)
464 cd00820 PEPCK_HprK Phosphoenol 98.5 3.9E-08 8.3E-13 85.1 2.4 53 1-67 21-78 (107)
465 COG0419 SbcC ATPase involved i 98.5 2.4E-07 5.1E-12 109.2 9.7 79 105-185 811-897 (908)
466 PRK06793 fliI flagellum-specif 98.5 3.6E-07 7.9E-12 97.6 8.5 137 1-193 162-305 (432)
467 smart00382 AAA ATPases associa 98.4 4.9E-06 1.1E-10 73.4 12.7 60 108-167 59-124 (148)
468 PRK13891 conjugal transfer pro 98.3 8.3E-06 1.8E-10 95.3 15.8 52 120-171 680-732 (852)
469 TIGR02680 conserved hypothetic 98.3 9.5E-07 2.1E-11 107.5 7.6 61 105-168 1243-1315(1353)
470 TIGR01420 pilT_fam pilus retra 98.2 8.1E-06 1.8E-10 85.7 10.5 56 119-183 187-242 (343)
471 TIGR02655 circ_KaiC circadian 98.2 8.5E-07 1.8E-11 97.3 2.5 68 107-184 113-190 (484)
472 PF13558 SbcCD_C: Putative exo 98.1 4.7E-06 1E-10 70.2 6.0 50 105-154 28-90 (90)
473 PRK06995 flhF flagellar biosyn 98.1 7.9E-06 1.7E-10 88.7 9.2 133 1-167 262-400 (484)
474 TIGR03518 ABC_perm_GldF glidin 98.1 0.00054 1.2E-08 68.3 21.3 188 288-490 2-209 (240)
475 cd01130 VirB11-like_ATPase Typ 98.0 1E-05 2.2E-10 77.4 6.3 66 1-71 31-100 (186)
476 cd02023 UMPK Uridine monophosp 97.9 8.5E-06 1.9E-10 78.5 4.7 108 1-142 5-113 (198)
477 PLN03210 Resistant to P. syrin 97.8 3.9E-05 8.4E-10 92.9 9.0 32 1-36 213-244 (1153)
478 TIGR03881 KaiC_arch_4 KaiC dom 97.8 1.3E-05 2.9E-10 78.9 4.1 40 145-184 141-188 (229)
479 PRK14088 dnaA chromosomal repl 97.8 0.00014 3E-09 79.0 10.9 97 126-224 193-296 (440)
480 PRK05399 DNA mismatch repair p 97.8 4E-05 8.6E-10 89.5 6.9 68 108-179 665-738 (854)
481 PRK00454 engB GTP-binding prot 97.8 0.00031 6.6E-09 67.0 11.9 67 84-158 126-195 (196)
482 PF12698 ABC2_membrane_3: ABC- 97.7 6.8E-06 1.5E-10 84.2 0.0 127 362-494 187-316 (344)
483 COG1682 TagG ABC-type polysacc 97.7 0.0033 7.1E-08 63.5 18.9 207 283-499 16-227 (263)
484 cd01876 YihA_EngB The YihA (En 97.7 3.6E-05 7.8E-10 70.5 4.4 64 84-155 101-169 (170)
485 PF12679 ABC2_membrane_2: ABC- 97.7 0.0042 9E-08 62.5 19.8 95 365-459 89-200 (277)
486 PRK13898 type IV secretion sys 97.7 0.00037 8.1E-09 81.3 13.6 49 123-171 638-687 (800)
487 cd00009 AAA The AAA+ (ATPases 97.7 7.1E-05 1.5E-09 66.6 5.7 55 115-170 72-131 (151)
488 PRK11545 gntK gluconate kinase 97.7 1.4E-05 3E-10 74.9 1.0 57 1-66 1-61 (163)
489 TIGR02903 spore_lon_C ATP-depe 97.7 8E-05 1.7E-09 84.0 7.3 108 1-154 181-291 (615)
490 TIGR01026 fliI_yscN ATPase Fli 97.7 0.00041 9E-09 74.9 12.3 61 133-196 276-345 (440)
491 TIGR00152 dephospho-CoA kinase 97.6 6.8E-05 1.5E-09 71.7 4.7 73 112-186 60-133 (188)
492 PRK13764 ATPase; Provisional 97.5 0.00051 1.1E-08 76.6 11.3 63 124-194 321-400 (602)
493 PRK06893 DNA replication initi 97.5 0.00037 8E-09 69.0 8.7 96 126-223 90-193 (229)
494 PRK09825 idnK D-gluconate kina 97.5 5.3E-05 1.1E-09 71.9 2.1 57 1-66 9-69 (176)
495 PRK07196 fliI flagellum-specif 97.4 9.9E-05 2.1E-09 79.2 4.0 151 1-191 161-333 (434)
496 cd01881 Obg_like The Obg-like 97.4 0.00034 7.4E-09 65.0 6.9 64 112-180 106-172 (176)
497 PRK15176 Vi polysaccharide exp 97.4 0.04 8.7E-07 55.7 22.4 73 426-498 158-230 (264)
498 TIGR03238 dnd_assoc_3 dnd syst 97.4 0.00012 2.5E-09 78.8 3.6 33 1-40 38-71 (504)
499 PRK09270 nucleoside triphospha 97.3 0.00015 3.2E-09 71.7 2.9 64 1-70 39-107 (229)
500 TIGR00416 sms DNA repair prote 97.3 0.00053 1.1E-08 74.7 7.3 62 126-187 169-247 (454)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-100 Score=847.78 Aligned_cols=511 Identities=40% Similarity=0.690 Sum_probs=449.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
|||||||||||||+|+|+.+.+ ...+|+|.+||++.+.. ++.+|||+|||.++|++||+|+|.|++.+|+|...++
T Consensus 62 mG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~ 139 (613)
T KOG0061|consen 62 MGPSGSGKTTLLNALAGRLNGG--LKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSK 139 (613)
T ss_pred ECCCCCCHHHHHHHHhccccCC--CcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCH
Confidence 7999999999999999998754 35799999999776554 4569999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
++++++|++++++|||.+|+|+.+|+...||+||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++
T Consensus 140 ~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~ 219 (613)
T KOG0061|consen 140 EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS 219 (613)
T ss_pred HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHHhhccCCCchhHHHhhHH
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQK 238 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~ 238 (551)
|+|||+++|||+.+++++||++++|++|+++|+|++++ +.+||++.|++||++.||+||++|+++.+.. ........
T Consensus 220 grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~-~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~--~~~~~~~~ 296 (613)
T KOG0061|consen 220 GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRE-LLEFFSSLGFPCPELENPADFLLDLLSVDSG--TRELEEAV 296 (613)
T ss_pred CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHH-HHHHHHhCCCCCCCcCChHHHHHHHHccCCC--chhHHhHH
Confidence 99999999999999999999999999999999999988 9999999999999999999999999986511 11111111
Q ss_pred hHHHHHHHHHhcchhhhccCCCcccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 008843 239 RIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAII 318 (551)
Q Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll 318 (551)
+.....+.++........ .. ...+..............+||.|++.|++|.+++.+|||.+...|.++.+++|++
T Consensus 297 ~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~ 371 (613)
T KOG0061|consen 297 RIAKLINKFSQTDNLKKT---LE--ALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLL 371 (613)
T ss_pred HHHHHhhhccccchhhhh---HH--HHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHH
Confidence 222222222210000000 00 0000000000001112689999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 008843 319 FGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLM 398 (551)
Q Consensus 319 ~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~i 398 (551)
+|++||+++++..++++|.|++|+.+.++.+.++.+++..|++||++|.||+.+|+|+.++||+|++++++|+.++.+++
T Consensus 372 lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~i 451 (613)
T KOG0061|consen 372 LGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSII 451 (613)
T ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999899998899999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccccchhh
Q 008843 399 FGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWI 478 (551)
Q Consensus 399 f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~ 478 (551)
|.+|+|||+|++++..+|++|++++++..++++++|+++|++.|+...|+.+++++++++++|+||+++.++||.||+|+
T Consensus 452 f~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~ 531 (613)
T KOG0061|consen 452 FSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWI 531 (613)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCccccCCC---CCCcchHHHhhccCc
Q 008843 479 PRVSLIRWAFQGLCINEFSGLQFDHQHS---FDIQTGEQVREGKKP 521 (551)
Q Consensus 479 ~yiSp~~y~~eal~~nef~g~~~~~~~~---~~~~~G~~~l~~~~~ 521 (551)
+|+|+++|++||+++|||.+....|... .+..+|++++...+.
T Consensus 532 ~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (613)
T KOG0061|consen 532 SYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGF 577 (613)
T ss_pred HHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCC
Confidence 9999999999999999999855667543 345689999876543
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.5e-97 Score=832.66 Aligned_cols=496 Identities=32% Similarity=0.553 Sum_probs=424.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||||+|+|+.+++ ..+|+|.+||++.... .+++|||+|++.+++.+||+||+.+++.++.+...+++
T Consensus 100 ~GpnGaGKSTLL~iLaG~~~~~---~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~ 176 (659)
T PLN03211 100 LGPSGSGKSTLLNALAGRIQGN---NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQ 176 (659)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC---ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHH
Confidence 6999999999999999998764 2489999999987543 35699999999999999999999999887766555666
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
+++++++++++.+||.+++|+.+|+..+++||||||||++||++|+.+|++|+|||||+|||+.++.++++.|++++++|
T Consensus 177 ~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g 256 (659)
T PLN03211 177 EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG 256 (659)
T ss_pred HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHHhhccCCCchh-HHHhhHH
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAE-SVYLSQK 238 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~~-~~~~~~~ 238 (551)
+|||+++|||+.+++++||++++|++|++++.|++++ +.+||+++|++||.+.|||||++++++.+..... .......
T Consensus 257 ~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~-~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~ 335 (659)
T PLN03211 257 KTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD-AMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN 335 (659)
T ss_pred CEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccch
Confidence 9999999999877899999999999999999999988 9999999999999999999999999875432100 0000111
Q ss_pred hHHHHHHHHHhcchhh---hccCC-C-cccccc--c-chhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHH
Q 008843 239 RIDSLAESFLQRSSTI---LYASP-L-ISREGY--K-KSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRAR 310 (551)
Q Consensus 239 ~~~~l~~~~~~~~~~~---~~~~~-~-~~~~~~--~-~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~ 310 (551)
..+.+.+.|++...+. ..... . ...... . ..+........+.++||+|+.+|++|++++ +||+.+..+|++
T Consensus 336 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~ 414 (659)
T PLN03211 336 VKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVF 414 (659)
T ss_pred HHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHH
Confidence 1233444453221100 00000 0 000000 0 000000011124578999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 008843 311 MSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIP 390 (551)
Q Consensus 311 ~~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp 390 (551)
+++++|+++|++||+++ ..++++|.|++||++++.++.+++.++..|++||+||+||+.+|+|++++|++|++++|+|
T Consensus 415 ~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP 492 (659)
T PLN03211 415 QVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLP 492 (659)
T ss_pred HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999985 6789999999999999888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCC
Q 008843 391 VGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADN 470 (551)
Q Consensus 391 ~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ 470 (551)
+.++.+++|++|+|||+||++++.+|++|++++++..++++++|+++|+++|+...|+.+++++++++++|+||+++ +
T Consensus 493 ~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ 570 (659)
T PLN03211 493 MELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--K 570 (659)
T ss_pred HHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred ccccchhhhccCHHHHHHHHHHHHhcCCCc-----cccCC
Q 008843 471 TPIIFRWIPRVSLIRWAFQGLCINEFSGLQ-----FDHQH 505 (551)
Q Consensus 471 ip~~~~W~~yiSp~~y~~eal~~nef~g~~-----~~~~~ 505 (551)
||+||+|++|+||++|+|||+++|||.+.+ ++|..
T Consensus 571 ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~ 610 (659)
T PLN03211 571 LPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSL 610 (659)
T ss_pred chHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCC
Confidence 999999999999999999999999997643 46754
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.4e-97 Score=827.22 Aligned_cols=516 Identities=34% Similarity=0.608 Sum_probs=451.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||||+|+|+.+++ ...+|+|.+||.+++.. ++.+|||+|+|.+++.+||+|||.|++.++.+...++
T Consensus 57 ~G~sGsGKSTLL~~L~g~~~~~--~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (617)
T TIGR00955 57 MGSSGAGKTTLMNALAFRSPKG--VKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTK 134 (617)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCH
Confidence 6999999999999999998764 23489999999987643 3569999999999999999999999999888776677
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCC-cCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDA-KVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
++++++++++++.+||.+++|+.+|+. ..++||||||||++||++|+.+|++++|||||+|||+.++.++++.|+++++
T Consensus 135 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~ 214 (617)
T TIGR00955 135 KEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ 214 (617)
T ss_pred HHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh
Confidence 788889999999999999999999986 3789999999999999999999999999999999999999999999999998
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHHhhccCCCchhHHHhhH
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSAESVYLSQ 237 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~ 237 (551)
+|+|||+++|||+.++++.||++++|++|+++|.|++++ +.+||+++|++||++.||+||++++++.+...... ..
T Consensus 215 ~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~-~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~---~~ 290 (617)
T TIGR00955 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ-AVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENE---SR 290 (617)
T ss_pred CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH-HHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccc---hH
Confidence 899999999999889999999999999999999999998 89999999999999999999999998765432211 22
Q ss_pred HhHHHHHHHHHhcchhhhccCCCccccc-ccc--hhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 008843 238 KRIDSLAESFLQRSSTILYASPLISREG-YKK--SKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARMSIA 314 (551)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~ 314 (551)
+..+++.+.|+++............... ... .........++..+|++|+.+|++|+++..+|||.++.+|++++++
T Consensus 291 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~ 370 (617)
T TIGR00955 291 ERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMM 370 (617)
T ss_pred HHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3455666666654322111100000000 000 0000011234678999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 008843 315 SAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAA 394 (551)
Q Consensus 315 ~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~ 394 (551)
+|+++|++||+++.+++++++|.|++|++.++.+|.++..++..|++||++|+||+.+|+|++++|++|++++|+|+.++
T Consensus 371 ~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~ 450 (617)
T TIGR00955 371 TAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFII 450 (617)
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCcccc
Q 008843 395 FPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPII 474 (551)
Q Consensus 395 ~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~ 474 (551)
.+++|.+|+|||+|+++++.+|+.|++++++..+++.++|+++++++|+..+|+.+++++++++++|+||+++.++||+|
T Consensus 451 ~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~ 530 (617)
T TIGR00955 451 LPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVY 530 (617)
T ss_pred HHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCHHHHHHHHHHHHhcCCCcc-ccCCCC----CCcchHHHhhccCch
Q 008843 475 FRWIPRVSLIRWAFQGLCINEFSGLQF-DHQHSF----DIQTGEQVREGKKPV 522 (551)
Q Consensus 475 ~~W~~yiSp~~y~~eal~~nef~g~~~-~~~~~~----~~~~G~~~l~~~~~~ 522 (551)
|+|++|+||++|++||++.|||.|.++ +|.++. +..+|+++++.++..
T Consensus 531 ~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~ 583 (617)
T TIGR00955 531 FKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFR 583 (617)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCC
Confidence 999999999999999999999999886 676421 335799999976543
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.4e-94 Score=857.39 Aligned_cols=501 Identities=26% Similarity=0.396 Sum_probs=432.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC--
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE-- 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~-- 74 (551)
+||||||||||||+|+|+.++. ....+|+|.+||+++.+. ++.++||+|+|.+++.+||+||+.|++.++.+.
T Consensus 93 lG~nGsGKSTLLk~LaG~~~~~-~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 171 (1394)
T TIGR00956 93 LGRPGSGCSTLLKTIASNTDGF-HIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNR 171 (1394)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-CCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCC
Confidence 6999999999999999997421 012489999999987432 234999999999999999999999998877543
Q ss_pred --CCCHHHHHHH-HHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 75 --ILSVEERDEY-VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 75 --~~~~~~~~~~-v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
..++++..++ ++++++.+||++++|+.+|++.+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~ 251 (1394)
T TIGR00956 172 PDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA 251 (1394)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence 2334444433 5779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHHhhccCCCch
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYSSA 230 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~ 230 (551)
|++++++ |+|||+++|||+.+++++||++++|++|+++|+|++++ +.+||+++|++||++.|||||++++++.+....
T Consensus 252 L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~-~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~ 330 (1394)
T TIGR00956 252 LKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK-AKQYFEKMGFKCPDRQTTADFLTSLTSPAERQI 330 (1394)
T ss_pred HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHH-HHHHHHHcCCCCCCCCChHHHHHhccChhhhhc
Confidence 9999974 89999999999889999999999999999999999988 999999999999999999999999987543211
Q ss_pred hH--HHhhHHhHHHHHHHHHhcchhhhccC-------CCccccc---ccchhh-----hhhhcccccCCHHHHHHHHHHH
Q 008843 231 ES--VYLSQKRIDSLAESFLQRSSTILYAS-------PLISREG---YKKSKL-----QKRTIVKKKGGWWRQFWLLLRR 293 (551)
Q Consensus 231 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~-----~~~~~~~~~~s~~~Q~~~L~~R 293 (551)
.. +.......+++.+.|+++........ ....... ...... .......+..|+|+|+++|++|
T Consensus 331 ~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R 410 (1394)
T TIGR00956 331 KPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLAR 410 (1394)
T ss_pred cccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHH
Confidence 10 01112345677788877653211000 0000000 000000 0111234678999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCC
Q 008843 294 AWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKG 373 (551)
Q Consensus 294 ~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g 373 (551)
++++.+|||.++.+|+++++++|+++|++||+++++++++++|.|++||++++.++.++.+ +..+..||+||+||+.+|
T Consensus 411 ~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~-i~~~~~eR~i~~re~~~~ 489 (1394)
T TIGR00956 411 NFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLE-IASMYEARPIVEKHRKYA 489 (1394)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcceeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999988765 455668999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008843 374 SYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPS 453 (551)
Q Consensus 374 ~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~ 453 (551)
+|++++|++|++++|+|+.++.+++|++|+|||+||++++++|++|++++++..++++++++++|+++||..+|+.++++
T Consensus 490 ~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~ 569 (1394)
T TIGR00956 490 LYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569 (1394)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHHhcCCCccccC
Q 008843 454 LMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQ 504 (551)
Q Consensus 454 ~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~nef~g~~~~~~ 504 (551)
+++++++|+||++|.++||+||+|++|+||++|+|||++.|||+|.+++|+
T Consensus 570 ~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 999999999999999999999999999999999999999999999999995
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.6e-92 Score=840.02 Aligned_cols=506 Identities=27% Similarity=0.459 Sum_probs=436.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
|||||||||||||+|+|+.+++ ..+|+|.+||++.+.. ++.+|||+|+|.+++.+||+|||.|++.++.+...++
T Consensus 912 ~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~ 988 (1470)
T PLN03140 912 MGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSK 988 (1470)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC---cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCH
Confidence 6999999999999999997543 3589999999886532 3458999999999999999999999998877655666
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
+++.++++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++
T Consensus 989 ~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 989 EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 67778899999999999999999998878999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcC-CeEEEecCCC---CchhhHHhhc-CCC-CCCCCCHHHHHHHhhccCCCchhH
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTE-GKLVYAGPAR---DEPLAYFSRF-GYT-CPDHVNPAEFLADLISVDYSSAES 232 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G~~~---~~~~~~f~~~-g~~-~p~~~~~ad~~~~~~~~~~~~~~~ 232 (551)
|+|||+++|||+.++++.||++++|++ |+++|+|+++ +.+.+||+++ |++ ||++.|||||++++++.+...
T Consensus 1069 g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--- 1145 (1470)
T PLN03140 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--- 1145 (1470)
T ss_pred CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---
Confidence 999999999998788899999999986 8999999974 2389999997 664 999999999999997643211
Q ss_pred HHhhHHhHHHHHHHHHhcchhhhccC---CCcccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 008843 233 VYLSQKRIDSLAESFLQRSSTILYAS---PLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRA 309 (551)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~ 309 (551)
...+++.+.|+++........ ....+. ... .......++..++|+|+.+|++|++++.||||.++.+|+
T Consensus 1146 -----~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~ 1217 (1470)
T PLN03140 1146 -----KLGIDFAEHYKSSSLYQRNKALVKELSTPP--PGA-SDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRF 1217 (1470)
T ss_pred -----cccchHHHHHhccHHHHHHHHHHHHhccCC--CCc-cccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHH
Confidence 011245566665543211100 000000 000 001112357789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCChHHHHHHHHH
Q 008843 310 RMSIASAIIFGSVFWRMGRSQ---TSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLI 386 (551)
Q Consensus 310 ~~~i~~~ll~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~~y~la~~l 386 (551)
++++++|+++|++||+++++. .+++++.|++|+++++.++.++.++++.|..||+||+||+.+|+|++++|++|+++
T Consensus 1218 ~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l 1297 (1470)
T PLN03140 1218 FFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVV 1297 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 999999999999999999765 56778899999999998888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcccc
Q 008843 387 AEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYV 466 (551)
Q Consensus 387 ~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i 466 (551)
+|+|+.++.+++|.+|+|||+||++++..|++|++++++..++++++|+++++++|+.++|+.+++++++++++|+||++
T Consensus 1298 ~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i 1377 (1470)
T PLN03140 1298 CEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFI 1377 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccchhhhccCHHHHHHHHHHHHhcCCCccccCCCC--CCcchHHH-hhccC
Q 008843 467 NADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHSF--DIQTGEQV-REGKK 520 (551)
Q Consensus 467 ~~~~ip~~~~W~~yiSp~~y~~eal~~nef~g~~~~~~~~~--~~~~G~~~-l~~~~ 520 (551)
|.++||+||+|++|+||++|+++|++.|||+|.+++|..+. .-++|++. ++.+|
T Consensus 1378 ~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g 1434 (1470)
T PLN03140 1378 PRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYG 1434 (1470)
T ss_pred ChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcC
Confidence 99999999999999999999999999999999988775432 12456665 45544
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9.8e-93 Score=845.80 Aligned_cols=517 Identities=25% Similarity=0.349 Sum_probs=438.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC---
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI--- 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~--- 75 (551)
+||||||||||||+|+|+++++ ...+|+|.+||++.++. ++.++||+|+|.+++.+||+|||.|+++++.+..
T Consensus 197 lGpnGSGKSTLLk~LaG~l~~~--~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~ 274 (1470)
T PLN03140 197 LGPPSSGKTTLLLALAGKLDPS--LKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYD 274 (1470)
T ss_pred EcCCCCCHHHHHHHHhCCCCCC--CcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCccc
Confidence 6999999999999999998765 24689999999987543 3569999999999999999999999988763211
Q ss_pred ----CCHHHH------------------------HHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhC
Q 008843 76 ----LSVEER------------------------DEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS 127 (551)
Q Consensus 76 ----~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~ 127 (551)
.+++++ +..++++++.+||++|+||.+|++.+++|||||||||+||++|+.+
T Consensus 275 ~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~ 354 (1470)
T PLN03140 275 LLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGP 354 (1470)
T ss_pred chhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCC
Confidence 111111 1246789999999999999999999999999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcC
Q 008843 128 PSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFG 206 (551)
Q Consensus 128 p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g 206 (551)
|++++|||||+|||+.++.++++.|+++++ .|+|+|+++|||+++++.+||+|++|++|+++|+||+++ +.+||+++|
T Consensus 355 p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~-~~~yF~~lG 433 (1470)
T PLN03140 355 TKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDH-ILEFFESCG 433 (1470)
T ss_pred CcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHH-HHHHHHHcC
Confidence 999999999999999999999999999986 589999999999889999999999999999999999988 899999999
Q ss_pred CCCCCCCCHHHHHHHhhccCCCchhH----HHhhHHhHHHHHHHHHhcchhhhccCCCcccccccchhhhhhhcccccCC
Q 008843 207 YTCPDHVNPAEFLADLISVDYSSAES----VYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGG 282 (551)
Q Consensus 207 ~~~p~~~~~ad~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 282 (551)
++||++.|||||++++++.+...... ........++++++|+++............+.+............++..+
T Consensus 434 f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s 513 (1470)
T PLN03140 434 FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP 513 (1470)
T ss_pred CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCC
Confidence 99999999999999998753321110 00001245778888887754321111000000000000011112457889
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008843 283 WWRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRMGRSQ---TSIQDRMGLLQVAAINTAMAALTKTVGVF 359 (551)
Q Consensus 283 ~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~i~~f 359 (551)
++.|++.|++|+++..+||+..+..|+++.+++|+++|++||+++.++ .+.+.+.|++||++++.++.++. .+..+
T Consensus 514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~-~l~~~ 592 (1470)
T PLN03140 514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFA-ELALM 592 (1470)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999999997543 34577889999998888887764 57888
Q ss_pred HHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008843 360 PKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGA 439 (551)
Q Consensus 360 ~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a 439 (551)
+.||+||+||+.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|++++++..++++++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHHhcCCCccccC--CCCCCcchHHHhh
Q 008843 440 MVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQ--HSFDIQTGEQVRE 517 (551)
Q Consensus 440 ~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~nef~g~~~~~~--~~~~~~~G~~~l~ 517 (551)
++|+..+|+.+++++++++++|+||++|.++||+||+|++|+||++||+||+++|||.+..+.+. .+....+|+++|+
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~ 752 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLN 752 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776521 1223579999998
Q ss_pred ccCc
Q 008843 518 GKKP 521 (551)
Q Consensus 518 ~~~~ 521 (551)
.++-
T Consensus 753 ~~g~ 756 (1470)
T PLN03140 753 IFDV 756 (1470)
T ss_pred hcCc
Confidence 6643
No 7
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9e-93 Score=800.38 Aligned_cols=494 Identities=29% Similarity=0.470 Sum_probs=437.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
||+||||||||||+||||...+ .++|+|.+||.|.+.. +|.+|||.|+|.|.+.+||+|.|.|+|.+|+|...+.
T Consensus 823 MG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~ 899 (1391)
T KOG0065|consen 823 MGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSD 899 (1391)
T ss_pred hcCCCCchHHHHHHHhcCcccc---eEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCH
Confidence 7999999999999999998543 6899999999998843 4679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC-ceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP-SVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p-~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+++.++|+++++.++|++++|..||... +|||.+||||++||.+|+.|| .||||||||||||+.+|..|++.+|++++
T Consensus 900 ~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~ 978 (1391)
T KOG0065|consen 900 EEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD 978 (1391)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999876 999999999999999999999 89999999999999999999999999999
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEc-CCeEEEecCCCCc---hhhHHhhcC-CCCCCCCCHHHHHHHhhccCCCchhH
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLT-EGKLVYAGPARDE---PLAYFSRFG-YTCPDHVNPAEFLADLISVDYSSAES 232 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~-~G~iv~~G~~~~~---~~~~f~~~g-~~~p~~~~~ad~~~~~~~~~~~~~~~ 232 (551)
.|+||+|++|||+..+++.||++++|+ +|++||.||..+. +.+||++.| .+||...|||||++|+++......-
T Consensus 979 tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~- 1057 (1391)
T KOG0065|consen 979 TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASL- 1057 (1391)
T ss_pred cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccccccc-
Confidence 999999999999999999999999995 6899999999874 567999986 8999999999999999875332210
Q ss_pred HHhhHHhHHHHHHHHHhcchhhhccCCCcc-cccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 008843 233 VYLSQKRIDSLAESFLQRSSTILYASPLIS-REGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRARM 311 (551)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~ 311 (551)
-.++++.|+++.......+.... ..+............++..|+|.|++.+++|++..+||||.++++|++.
T Consensus 1058 -------~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~ 1130 (1391)
T KOG0065|consen 1058 -------SVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFAL 1130 (1391)
T ss_pred -------CccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 12456666666543221110000 0000000011112345789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 008843 312 SIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPV 391 (551)
Q Consensus 312 ~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~ 391 (551)
.++.||++|+.||++|++..++||.+|++|+.+++..........+.+..||.+++||+.+|+||+.+|++|++++|+|+
T Consensus 1131 ~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~ 1210 (1391)
T KOG0065|consen 1131 TIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPY 1210 (1391)
T ss_pred HHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988776655444446777888999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCc
Q 008843 392 GAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNT 471 (551)
Q Consensus 392 ~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~i 471 (551)
.++++++|.+++|+++|+..++.+|++|++.+++..+..+.+|+++.+++|+.+.|..+.+.++.++.+|||+++|++.|
T Consensus 1211 ~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~i 1290 (1391)
T KOG0065|consen 1211 NLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLI 1290 (1391)
T ss_pred HHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCHHHHHHHHHHHHhcCCCccccCCC
Q 008843 472 PIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQHS 506 (551)
Q Consensus 472 p~~~~W~~yiSp~~y~~eal~~nef~g~~~~~~~~ 506 (551)
|.||+|+||+||+.|..++++..+++|.+..|...
T Consensus 1291 P~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~ 1325 (1391)
T KOG0065|consen 1291 PKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDS 1325 (1391)
T ss_pred cceeeeeeecCcHHHHHHHHHHHHhCCCceeeecC
Confidence 99999999999999999999999999999999643
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.2e-90 Score=822.60 Aligned_cols=493 Identities=27% Similarity=0.425 Sum_probs=423.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||||+|+|+.+++ ...+|+|.+||+++... ++++|||+|+|.+++.+||+|||.|++.++.+...+++
T Consensus 795 ~G~sGaGKSTLL~~Lag~~~~g--~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~ 872 (1394)
T TIGR00956 795 MGASGAGKTTLLNVLAERVTTG--VITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKS 872 (1394)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHH
Confidence 6999999999999999998742 11279999999998543 45699999999999999999999999988876556677
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCc-eEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS-VIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~-illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
+++++++++++.+||.+++|+.+|+. ..+||||||||++||++|+.+|+ +|+|||||+|||+.++..+++.|++++++
T Consensus 873 ~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~ 951 (1394)
T TIGR00956 873 EKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH 951 (1394)
T ss_pred HHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 77889999999999999999998863 34899999999999999999997 99999999999999999999999999988
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcCC-eEEEecCCCC---chhhHHhhcCC-CCCCCCCHHHHHHHhhccCCCchhHH
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTEG-KLVYAGPARD---EPLAYFSRFGY-TCPDHVNPAEFLADLISVDYSSAESV 233 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~G-~iv~~G~~~~---~~~~~f~~~g~-~~p~~~~~ad~~~~~~~~~~~~~~~~ 233 (551)
|+|||+++|||+..++..||++++|++| +++|.|++++ .+.+||++.|+ +||++.|||||++|+++.+.....
T Consensus 952 g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~-- 1029 (1394)
T TIGR00956 952 GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA-- 1029 (1394)
T ss_pred CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch--
Confidence 9999999999987778889999999987 9999999843 27899999996 999999999999999875432211
Q ss_pred HhhHHhHHHHHHHHHhcchhhhccC---CCcccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHHHH
Q 008843 234 YLSQKRIDSLAESFLQRSSTILYAS---PLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVRAR 310 (551)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~ 310 (551)
.+++.+.|+++........ ...................++.+++|+|+++|++|++++.||||.++.+|++
T Consensus 1030 ------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~ 1103 (1394)
T TIGR00956 1030 ------NQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFF 1103 (1394)
T ss_pred ------hccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1234455554432111000 0000000000000001123577899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHhcCCCCChHHHHHHHHHHHH
Q 008843 311 MSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIV-DRERAKGSYALGPYLLSKLIAEI 389 (551)
Q Consensus 311 ~~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er~v~-~rE~~~g~Y~~~~y~la~~l~~l 389 (551)
+++++|+++|++||++++++.++++|+|++|+.+++..+. ....++.|+.||.+| +||+.+|+|++++|++|++++|+
T Consensus 1104 ~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~el 1182 (1394)
T TIGR00956 1104 LTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEI 1182 (1394)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887766555 345788888999886 99999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcccccccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Q 008843 390 PVGAAFPLMFGAVLYPMARLHPTLSR-------FGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFG 462 (551)
Q Consensus 390 p~~~~~~~if~~i~Y~~~gl~~~~~~-------f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~ 462 (551)
|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+++++++|+..+|+.+++++++++++|+
T Consensus 1183 P~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~ 1262 (1394)
T TIGR00956 1183 PYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFC 1262 (1394)
T ss_pred HHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988765 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccchhhhccCHHHHHHHHHHHHhcCCCccccCC
Q 008843 463 GYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQH 505 (551)
Q Consensus 463 Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~nef~g~~~~~~~ 505 (551)
||+++.++||.||+|++|+||++|+++|++.|||+|.+++|..
T Consensus 1263 G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~ 1305 (1394)
T TIGR00956 1263 GVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKV 1305 (1394)
T ss_pred cccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCc
Confidence 9999999999999999999999999999999999999998865
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.5e-86 Score=744.81 Aligned_cols=500 Identities=30% Similarity=0.442 Sum_probs=438.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc--ceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC---
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA--YKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI--- 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~--~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~--- 75 (551)
+||+||||||||++|+|..+... ...|+|.+||.+.++.. +.++|++|+|.|+|.|||+|+|.|+++++.+..
T Consensus 147 LG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~ 224 (1391)
T KOG0065|consen 147 LGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD 224 (1391)
T ss_pred ecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc
Confidence 69999999999999999987542 34789999999887643 459999999999999999999999999988732
Q ss_pred -CCHHHHHH-HHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 76 -LSVEERDE-YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 76 -~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.++.++.+ ..+.+++.+||++|+||.|||+.+||+||||||||++|.+++.+|+++++||+|+|||+.++.++++.||
T Consensus 225 ~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr 304 (1391)
T KOG0065|consen 225 EVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALR 304 (1391)
T ss_pred cccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHH
Confidence 22333322 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHHhhccCCC----
Q 008843 154 QLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLISVDYS---- 228 (551)
Q Consensus 154 ~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~---- 228 (551)
++++ .+.|+++++|||+++++++||+|++|.+|+++|+||.++ +.+||+++|+.||++.++|||+.++++....
T Consensus 305 ~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~-~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~ 383 (1391)
T KOG0065|consen 305 QLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDE-VLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYW 383 (1391)
T ss_pred HHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHH-HHHHHHhcCccCCCccCHHHHHHHhhcCccccccc
Confidence 9996 478999999999999999999999999999999999998 9999999999999999999999999872111
Q ss_pred chhHHHhhHHhHHHHHHHHHhcchhhhccCCCcccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHhcChhHHHHH
Q 008843 229 SAESVYLSQKRIDSLAESFLQRSSTILYASPLISREGYKKSKLQKRTIVKKKGGWWRQFWLLLRRAWMQASRDGPTNKVR 308 (551)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r 308 (551)
..+........++++.+.|.+++.......+...+.+............++..+.|.|+..|++|.+....||..++..+
T Consensus 384 ~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~ 463 (1391)
T KOG0065|consen 384 NKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFK 463 (1391)
T ss_pred cccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhH
Confidence 11111112234467788887775433222221111111111122233456889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCChHHHHHHHHHH
Q 008843 309 ARMSIASAIIFGSVFWRMG-RSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIA 387 (551)
Q Consensus 309 ~~~~i~~~ll~G~~f~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~ 387 (551)
+++.+++|+++|++|++.+ .+..+.+.|.|++||++++.++.++.+.-.. .+.||||+|||...+|++++|.++.+++
T Consensus 464 ~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~-~~~~pv~~Khr~~~fY~p~A~al~s~l~ 542 (1391)
T KOG0065|consen 464 TVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALT-FQRLPVFYKHRDLSFYPPWAEALASTLL 542 (1391)
T ss_pred HHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHH-HhhcchHHHhhcccccChHHHHHHHHHH
Confidence 9999999999999999999 7778899999999999999999998765444 4789999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccC
Q 008843 388 EIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVN 467 (551)
Q Consensus 388 ~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~ 467 (551)
++|+.++.+++|.+|+||++||.+++++||.+++++++..++++++++++++++++...|+.++++.++.+.+++||+||
T Consensus 543 ~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip 622 (1391)
T KOG0065|consen 543 KIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIP 622 (1391)
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccchhhhccCHHHHHHHHHHHHhcCCCccccC
Q 008843 468 ADNTPIIFRWIPRVSLIRWAFQGLCINEFSGLQFDHQ 504 (551)
Q Consensus 468 ~~~ip~~~~W~~yiSp~~y~~eal~~nef~g~~~~~~ 504 (551)
.++||+||+|++|+||+.|++|+++.|||+|++++|.
T Consensus 623 ~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~ 659 (1391)
T KOG0065|consen 623 KKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCS 659 (1391)
T ss_pred ccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCC
Confidence 9999999999999999999999999999999999998
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-47 Score=356.93 Aligned_cols=199 Identities=34% Similarity=0.512 Sum_probs=176.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||||||.++.+++ +|+|.++|.++.. .++++|+|+|+..+||++||.||+..+...- .
T Consensus 34 iGpSGSGKSTlLRclN~LE~~~-----~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~ 106 (240)
T COG1126 34 IGPSGSGKSTLLRCLNGLEEPD-----SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--K 106 (240)
T ss_pred ECCCCCCHHHHHHHHHCCcCCC-----CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--c
Confidence 6999999999999999999988 8999999976642 2456999999999999999999999986432 2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
..++++.++++.++|+++||.+.+| .++.+|||||||||+|||||+.+|+++++|||||+|||....++++.+++
T Consensus 107 ~~~k~eA~~~A~~lL~~VGL~~ka~-----~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 107 KLSKAEAREKALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhh-----hCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence 4578889999999999999987665 47899999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHH
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLAD 221 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~ 221 (551)
||++|.|.+++||++. .+.+.+|||++|++|+++..|++++ + |..|.+....+|+..
T Consensus 182 LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~----~-----f~~p~~~R~~~FL~~ 238 (240)
T COG1126 182 LAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEE----F-----FDNPKSERTRQFLSK 238 (240)
T ss_pred HHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHH----H-----hcCCCCHHHHHHHHh
Confidence 9999999999999975 7788899999999999999998766 2 456766666777654
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=350.07 Aligned_cols=200 Identities=29% Similarity=0.416 Sum_probs=177.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+|+||||||||+|+|.++..|+ +|+|.++|+++... +++||+++|+..++...||.||+.|..++..
T Consensus 38 IG~SGAGKSTLiR~iN~Le~Pt-----sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag 112 (339)
T COG1135 38 IGYSGAGKSTLLRLINLLERPT-----SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG 112 (339)
T ss_pred EcCCCCcHHHHHHHHhccCCCC-----CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC
Confidence 6999999999999999999998 89999999877542 3569999999999999999999999988753
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.+++++++++.++++.+||++.+| .++.+|||||||||+|||||+.+|+||++|||||+|||.+...|+++|
T Consensus 113 ---~~k~ei~~RV~elLelVgL~dk~~-----~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL 184 (339)
T COG1135 113 ---VPKAEIKQRVAELLELVGLSDKAD-----RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELL 184 (339)
T ss_pred ---CCHHHHHHHHHHHHHHcCChhhhc-----cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence 678999999999999999976554 578999999999999999999999999999999999999999999999
Q ss_pred HHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHHhh
Q 008843 153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADLI 223 (551)
Q Consensus 153 ~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~ 223 (551)
+++.+ .|.||+++||++ +-+...||||.+|++|++++.|+..++ |..|.+.-..+|+.+..
T Consensus 185 ~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v---------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 185 KDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV---------FANPKHAITQEFIGETL 246 (339)
T ss_pred HHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh---------hcCcchHHHHHHHHhhc
Confidence 99985 599999999997 578999999999999999999998773 45566555556655443
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-42 Score=353.69 Aligned_cols=188 Identities=38% Similarity=0.576 Sum_probs=167.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|.+.... ++++||++|++.+++.+||+|+|.|.+.++...
T Consensus 37 lG~NGAGKTTllk~l~gl~~p~-----~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~-- 109 (293)
T COG1131 37 LGPNGAGKTTLLKILAGLLKPT-----SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS-- 109 (293)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC--
Confidence 6999999999999999999987 89999999887652 356999999999999999999999999987543
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
....+++++++++.+||.+.+ ++++++||+|||||++||+||+++|+++||||||+|||+.++.++.+.|++++
T Consensus 110 -~~~~~~~~~~~l~~~~L~~~~-----~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 110 -KEEAEERIEELLELFGLEDKA-----NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred -hhHHHHHHHHHHHHcCCchhh-----CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 245567899999999997633 45678999999999999999999999999999999999999999999999999
Q ss_pred hCC-CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHh
Q 008843 157 QDG-HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS 203 (551)
Q Consensus 157 ~~g-~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~ 203 (551)
++| +||+++||++. ++..+||+|++|++|++++.|++++ ....+.
T Consensus 184 ~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~-l~~~~~ 229 (293)
T COG1131 184 KEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEE-LKEKFG 229 (293)
T ss_pred hCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHH-HHHhhc
Confidence 887 79999999975 7888899999999999999997766 444443
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=354.52 Aligned_cols=196 Identities=29% Similarity=0.446 Sum_probs=175.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|||+.+|+ +|+|.++|++++.. .|.+|+|+|+..+||+|||+||+.|+.+.+ ..+
T Consensus 35 lGPSGcGKSTlLr~IAGLe~~~-----~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~ 106 (338)
T COG3839 35 LGPSGCGKSTLLRMIAGLEEPT-----SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVP 106 (338)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCc
Confidence 6999999999999999999998 89999999998763 467999999999999999999999998875 346
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+++.+++++++.+.|+|++..| +++++|||||||||+|||||+++|+++++|||.|+||...+..+...|+++.+
T Consensus 107 k~ei~~rV~eva~~L~l~~lL~-----r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~ 181 (338)
T COG3839 107 KAEIDKRVKEVAKLLGLEHLLN-----RKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181 (338)
T ss_pred hHHHHHHHHHHHHHcCChhHHh-----cCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence 7889999999999999966554 56889999999999999999999999999999999999999999999999885
Q ss_pred -CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHH
Q 008843 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFL 219 (551)
Q Consensus 158 -~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~ 219 (551)
.|.|+|.+|||. .++..++||+.+|++|++...|+|.+. |..|.+.-.|+|+
T Consensus 182 ~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~el---------y~~P~n~fVA~Fi 234 (338)
T COG3839 182 RLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLEL---------YERPANLFVAGFI 234 (338)
T ss_pred hcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHH---------hhCccchhhhhhc
Confidence 488999999996 588899999999999999999999873 4455555555554
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-42 Score=335.10 Aligned_cols=172 Identities=33% Similarity=0.496 Sum_probs=156.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++......++||+|++.++|.+||.||+.++...+. .++++
T Consensus 35 lGpSGcGKSTLLriiAGL~~p~-----~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e 106 (248)
T COG1116 35 LGPSGCGKSTLLRLIAGLEKPT-----SGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAE 106 (248)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHh
Confidence 6999999999999999999998 899999999996667789999999999999999999999987753 45667
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g 159 (551)
+++++++.|+.+||.+.. ++++++|||||||||+|||||+.+|++|+||||+++||+.++.++-+.|.++. +.+
T Consensus 107 ~~~~a~~~L~~VgL~~~~-----~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~ 181 (248)
T COG1116 107 ARERAKELLELVGLAGFE-----DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR 181 (248)
T ss_pred HHHHHHHHHHHcCCcchh-----hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC
Confidence 778999999999996554 56899999999999999999999999999999999999999999999999987 568
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEG 186 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G 186 (551)
+||+++|||.. ++..+.|||++|.++
T Consensus 182 ~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 182 KTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred CEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 89999999975 677789999999884
No 15
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=334.10 Aligned_cols=184 Identities=29% Similarity=0.443 Sum_probs=169.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|||||||||+||+|.++.+|+ +|+|.+||+++... ++++|||-|...+||++||.||+.+.-.+. .
T Consensus 33 iGpSGsGKTTtLkMINrLiept-----~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~ 104 (309)
T COG1125 33 IGPSGSGKTTTLKMINRLIEPT-----SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---G 104 (309)
T ss_pred ECCCCCcHHHHHHHHhcccCCC-----CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---C
Confidence 6999999999999999999998 89999999998763 467999999999999999999999987765 3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
+++++++++++++++.+||++ ..+.++++++|||||+|||.+||||+.+|+++++|||+++|||.++.++-+.++++
T Consensus 105 w~k~~i~~r~~ELl~lvgL~p---~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 105 WDKERIKKRADELLDLVGLDP---SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCH---HHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence 568889999999999999953 24667899999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 156 AQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 156 a~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+ -|+|||++|||. +++..+.|||.+|++|+++..++|++
T Consensus 182 q~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~ 222 (309)
T COG1125 182 QKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDE 222 (309)
T ss_pred HHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHH
Confidence 85 599999999996 58899999999999999999999877
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-41 Score=329.81 Aligned_cols=174 Identities=37% Similarity=0.533 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+|||||||||||++|+|+.+|+ +|+|.++|.++... ++++|||+|+..+.|.+||.||+.+...+.
T Consensus 37 ~GpSGSGKSTLLniig~ld~pt-----~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~ 111 (226)
T COG1136 37 VGPSGSGKSTLLNLLGGLDKPT-----SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111 (226)
T ss_pred ECCCCCCHHHHHHHHhcccCCC-----CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence 6999999999999999999997 89999999887542 234999999999999999999999887654
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
.. ...+.+++++++++.+||.+..+ +.++.+|||||||||+|||||+.+|++++.||||.+||+.++.+|+++
T Consensus 112 ~~---~~~~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l 184 (226)
T COG1136 112 GK---SAGRRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184 (226)
T ss_pred CC---ChhHHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence 32 22256778899999999975443 356889999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
|++++++ |+|||++|||| .+...|||++.|++|++
T Consensus 185 l~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 185 LRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999865 89999999997 56778999999999983
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-42 Score=338.33 Aligned_cols=185 Identities=31% Similarity=0.486 Sum_probs=167.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE---eCCc---ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~---~~~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||||+|+|+..|+ .|.|.+||+ +.+. ..++||||+|+..+|++|||.||+.|+...+ ..
T Consensus 34 lGpSGaGKsTlLRiIAGLe~p~-----~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~ 107 (345)
T COG1118 34 LGPSGAGKSTLLRIIAGLETPD-----AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KE 107 (345)
T ss_pred ECCCCCcHHHHHHHHhCcCCCC-----CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc-cc
Confidence 5999999999999999999998 899999999 4443 2367999999999999999999999999776 23
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
..++.+++.+++++|+.+.|++ ++++++.+|||||||||++||||+..|++|+||||.++||...+.++-+.|++
T Consensus 108 ~p~~~~~r~rv~elL~lvqL~~-----la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 108 RPSEAEIRARVEELLRLVQLEG-----LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred CCChhhHHHHHHHHHHHhcccc-----hhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence 3456778899999999999955 45678999999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
+.++ |.|++++|||+ .++++++|||++|++|+|...|+++++
T Consensus 183 ~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 183 LHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9865 99999999996 589999999999999999999999873
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-42 Score=353.39 Aligned_cols=199 Identities=30% Similarity=0.472 Sum_probs=178.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|||+..|+ +|+|.++|++++.. +|.+|+|+|+-.+||+|||+||+.|+.+.+ ....
T Consensus 37 LGPSGcGKTTlLR~IAGfe~p~-----~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~ 109 (352)
T COG3842 37 LGPSGCGKTTLLRMIAGFEQPS-----SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLK 109 (352)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCC
Confidence 6999999999999999999998 89999999998753 466999999999999999999999998743 2345
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
++++++++++.++.++|++. +++++.+|||||||||+|||||+.+|++|+||||.|+||..-+.++...|+++.+
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~-----~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~ 184 (352)
T COG3842 110 KAEIKARVEEALELVGLEGF-----ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184 (352)
T ss_pred HHHHHHHHHHHHHHcCchhh-----hhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence 67788999999999999654 4567899999999999999999999999999999999999999999999999974
Q ss_pred -CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHH
Q 008843 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLAD 221 (551)
Q Consensus 158 -~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~ 221 (551)
.|.|.|++|||. .+...++|||.+|++|++.-.|+|++. |..|.+.-.|||+.+
T Consensus 185 ~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei---------Y~~P~~~fVA~FiG~ 239 (352)
T COG3842 185 ELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI---------YERPATRFVADFIGE 239 (352)
T ss_pred hcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH---------hhCcchHHHHHHhCc
Confidence 599999999996 578899999999999999999999883 567777777888764
No 19
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.7e-42 Score=327.30 Aligned_cols=184 Identities=31% Similarity=0.462 Sum_probs=166.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
|||||||||||||+|.|+++|+ +|+|.++|+++... ++++|+++|+..+|..+||.||+.|..+-+
T Consensus 40 iGgSGsGKStlLr~I~Gll~P~-----~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~- 113 (263)
T COG1127 40 LGGSGSGKSTLLRLILGLLRPD-----KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH- 113 (263)
T ss_pred ECCCCcCHHHHHHHHhccCCCC-----CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh-
Confidence 6999999999999999999998 89999999987542 256999999999999999999999976543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
..++++..++.+..-|+.+||.. .+.+.++.+||||||||+++|||++.||+++|+||||+||||.++..+.+++
T Consensus 114 -~~lp~~~i~~lv~~KL~~VGL~~----~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI 188 (263)
T COG1127 114 -TKLPESLIRELVLMKLELVGLRG----AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188 (263)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCh----hhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHH
Confidence 24677888899999999999953 3356789999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++.+. |.|++++|||. .+++..+||+++|.+|+++..|++++
T Consensus 189 ~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 189 RELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 999864 88999999996 58899999999999999999999877
No 20
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.8e-42 Score=337.71 Aligned_cols=186 Identities=37% Similarity=0.481 Sum_probs=162.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||||+|+|.++|. +|+|.++|+++... .+++|||||+......+||+|.+.++..-+....
T Consensus 34 iGpNG~GKSTLLk~l~g~l~p~-----~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 34 LGPNGSGKSTLLKCLAGLLKPK-----SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred ECCCCCCHHHHHHHHhccCCCC-----CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 6999999999999999999987 89999999988653 3579999999988889999999998865322111
Q ss_pred -CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 76 -LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 76 -~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
...++.++.+++.|+.+|+.+.+++ .+.+|||||||||.|||||+++|++|+||||||.||...+.++++++++
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r-----~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhcC-----cccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 1123344579999999999877765 4568999999999999999999999999999999999999999999999
Q ss_pred HH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 155 LA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 155 la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
++ ++|+|||+++||++ .+..+||++++|++|++++.|+|+++
T Consensus 184 l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 184 LNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchh
Confidence 99 56999999999986 56777999999999999999999874
No 21
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-41 Score=315.58 Aligned_cols=182 Identities=32% Similarity=0.489 Sum_probs=168.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+|||||||||+||+|++++.|+ +|+|.+||.+..+. ++++|.++.+..++..||++|||.|.+++. .+
T Consensus 34 LG~NGAGKTT~LRmiatlL~P~-----~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l 105 (245)
T COG4555 34 LGENGAGKTTLLRMIATLLIPD-----SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GL 105 (245)
T ss_pred EcCCCCCchhHHHHHHHhccCC-----CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hh
Confidence 5999999999999999999998 89999999886543 467999998889999999999999999885 45
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
+..+.+++++++.+.|+|.+++|+.+| ++|-|+||||+|||||++||++++|||||||||..++..+.+.++++.
T Consensus 106 ~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k 180 (245)
T COG4555 106 SRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180 (245)
T ss_pred hhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh
Confidence 677888999999999999998887665 799999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|++||+++|.+ +++..+||+|++|++|++|+.|+.++
T Consensus 181 ~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 181 NEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred cCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHH
Confidence 9999999999996 58999999999999999999998865
No 22
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-41 Score=309.32 Aligned_cols=182 Identities=29% Similarity=0.468 Sum_probs=161.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|...|. +|+|.+||++.+.. .+-++.++|+.++|.+|||.+|+.++..-.+ .++
T Consensus 31 ~GpSGaGKSTLLnLIAGF~~P~-----~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~ 103 (231)
T COG3840 31 LGPSGAGKSTLLNLIAGFETPA-----SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN 103 (231)
T ss_pred ECCCCccHHHHHHHHHhccCCC-----CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccC
Confidence 6999999999999999999987 89999999987643 3559999999999999999999998764322 122
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
.+.+++++.++..+||..+.+ +.+.+|||||||||++||+|+++-+|++||||+|.|||..+.+++.++.++++
T Consensus 104 -a~~r~~v~~aa~~vGl~~~~~-----RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~ 177 (231)
T COG3840 104 -AEQREKVEAAAAQVGLAGFLK-----RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCD 177 (231)
T ss_pred -HHHHHHHHHHHHHhChhhHhh-----hCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHH
Confidence 455678999999999976654 46789999999999999999999999999999999999999999999999985
Q ss_pred -CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 -~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.|++++||+|+ ++....|+++++++||+.+.|+.++
T Consensus 178 E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 178 ERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred hhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHH
Confidence 5789999999986 6778899999999999999998765
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=326.86 Aligned_cols=183 Identities=32% Similarity=0.544 Sum_probs=157.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc--ceEEEEccCC---CCCCCCCHHHHHHHHHHcCCC--
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA--YKFAYVRQED---LFFSQLTVRETLSLAAELQLP-- 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~--~~i~yv~Q~~---~l~~~lTV~e~l~~~~~l~~~-- 73 (551)
+||||||||||+|+|.|+++|. +|+|.++|++....+ .+||||||.. .-|| +||+|.+..+...+..
T Consensus 36 iGPNGaGKSTLlK~iLGll~p~-----~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 36 IGPNGAGKSTLLKAILGLLKPS-----SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-----cceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccc
Confidence 6999999999999999999987 899999999876654 6799999954 3355 6999999887543321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
+..+++ .++.+++.|+.+|+.+.+|..+ .+|||||+|||-|||||+++|++|+|||||+|+|+.++..++++|+
T Consensus 110 ~~~~~~-d~~~v~~aL~~Vgm~~~~~r~i-----~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~ 183 (254)
T COG1121 110 RRLNKK-DKEKVDEALERVGMEDLRDRQI-----GELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK 183 (254)
T ss_pred ccccHH-HHHHHHHHHHHcCchhhhCCcc-----cccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 122333 3678999999999988777655 4799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
+++++|+||++++||+. .+...||+|+.|+ +++++.|++++.
T Consensus 184 ~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 184 ELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99988999999999975 6888899999995 568889999874
No 24
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-41 Score=314.96 Aligned_cols=203 Identities=28% Similarity=0.407 Sum_probs=176.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
|||||||||||||++..+....++.+++|+|.++|+++-.. ++++|+|+|.+..|| +|++||+.|+.+++..
T Consensus 39 IGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~ 117 (253)
T COG1117 39 IGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI 117 (253)
T ss_pred ECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhcc
Confidence 69999999999999999988777788999999999987543 466999999999999 8999999999887643
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
. .++.+++++..|+.-.|.+ +.|.. ++...+|||||+||++|||+|+.+|+||+||||||+|||.+..+|-+++
T Consensus 118 ~---~~~ldeiVe~sLk~AaLWdEVKDrL--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi 192 (253)
T COG1117 118 K---DKELDEIVESSLKKAALWDEVKDRL--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELI 192 (253)
T ss_pred c---hHHHHHHHHHHHHHhHhHHHhHHHh--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHH
Confidence 2 2678889999999999965 34332 3457789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHH
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLA 220 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~ 220 (551)
.+|+ +.-|||++||.+. .+....|+..++..|+++++|++++. |..|.+..+.||+.
T Consensus 193 ~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~i---------F~~P~~~~TedYis 249 (253)
T COG1117 193 TELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKI---------FTNPKHKRTEDYIS 249 (253)
T ss_pred HHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhh---------hcCccHHHHHHHhc
Confidence 9998 4689999999975 66778899999999999999998873 56788777777754
No 25
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-40 Score=342.15 Aligned_cols=182 Identities=26% Similarity=0.390 Sum_probs=162.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++.+|||+|+..+||++||+||+.|+...+ ..+
T Consensus 36 lG~sGsGKSTLLr~iaGl~~p~-----~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~ 107 (356)
T PRK11650 36 VGPSGCGKSTLLRMVAGLERIT-----SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMP 107 (356)
T ss_pred ECCCCCcHHHHHHHHHCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999987543 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+.+.+++++++++.+||.+..| +++++|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+
T Consensus 108 ~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 108 KAEIEERVAEAARILELEPLLD-----RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred HHHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 5666778999999999966554 56789999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 183 ~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 183 RLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 5 89999999996 47889999999999999999999876
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.1e-39 Score=301.07 Aligned_cols=179 Identities=30% Similarity=0.396 Sum_probs=161.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||||+|.+..+|+ .|+|.+||+++... +++||+|+||..+.+++||.||+.|+.+...
T Consensus 34 ~GpSGAGKSTllkLi~~~e~pt-----~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G 108 (223)
T COG2884 34 TGPSGAGKSTLLKLIYGEERPT-----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG 108 (223)
T ss_pred ECCCCCCHHHHHHHHHhhhcCC-----CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence 5999999999999999999998 89999999987653 3569999999999999999999999987643
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.+..+.++++.++|+.+||.+.++ ..+.+|||||||||+||||++.+|++|+.||||.+|||..+.+|++++
T Consensus 109 ---~~~~~i~~rV~~~L~~VgL~~k~~-----~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lf 180 (223)
T COG2884 109 ---KPPREIRRRVSEVLDLVGLKHKAR-----ALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF 180 (223)
T ss_pred ---CCHHHHHHHHHHHHHHhccchhhh-----cCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHH
Confidence 456788899999999999977664 467899999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
.++.+.|.||++.||+. ..+..+-.|++.|++|+++....
T Consensus 181 eeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 181 EEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999994 46666667899999999987643
No 27
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=340.54 Aligned_cols=182 Identities=29% Similarity=0.480 Sum_probs=163.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++++|||+|+..+||++||+||+.|+...+ ...
T Consensus 38 lGpsGsGKSTLLr~IaGl~~p~-----~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~ 109 (351)
T PRK11432 38 LGPSGCGKTTVLRLVAGLEKPT-----EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVP 109 (351)
T ss_pred ECCCCCcHHHHHHHHHCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999987643 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+.+.+++++++++.+||.+.. +++++.|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus 110 ~~~~~~~v~~~l~~~gl~~~~-----~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 184 (351)
T PRK11432 110 KEERKQRVKEALELVDLAGFE-----DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ 184 (351)
T ss_pred HHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 567778899999999996554 456789999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 185 ~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 185 QFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred hcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 5 89999999997 47888999999999999999998876
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.4e-39 Score=340.26 Aligned_cols=182 Identities=30% Similarity=0.446 Sum_probs=163.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+|||||||||||++|+|+.+|+ +|+|.++|+++... ++.+|||+|+..+||++||+||+.|+...+ ..+
T Consensus 36 ~GpsGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~ 107 (353)
T TIGR03265 36 LGPSGCGKTTLLRIIAGLERQT-----AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMG 107 (353)
T ss_pred ECCCCCCHHHHHHHHHCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999987643 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+.+.+++++++++.+||++..| +++++|||||||||+|||+|+.+|++++||||++|||..++.++.+.|+++.+
T Consensus 108 ~~~~~~~~~~~l~~l~L~~~~~-----~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 108 RAEVAERVAELLDLVGLPGSER-----KYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred HHHHHHHHHHHHHHcCCCchhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 5667788999999999976554 46789999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 183 ~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~ 221 (353)
T TIGR03265 183 RLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQE 221 (353)
T ss_pred hcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 4 89999999997 47889999999999999999999876
No 29
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.5e-39 Score=336.51 Aligned_cols=182 Identities=27% Similarity=0.402 Sum_probs=161.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++++||++|+..+++.+||+||+.+.....
T Consensus 37 iG~sGaGKSTLlr~I~gl~~p~-----~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~- 110 (343)
T TIGR02314 37 IGASGAGKSTLIRCVNLLERPT-----SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD- 110 (343)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc-
Confidence 6999999999999999999987 89999999987542 346999999999999999999999876542
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
..++.+.++++.++++.+||.+..| .++++|||||||||+|||||+.+|++|+|||||+|||+.++..++++|
T Consensus 111 --~~~~~~~~~~v~e~l~~vgL~~~~~-----~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 111 --NTPKDEIKRKVTELLALVGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2345666778999999999976554 467899999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++ |.|||++||++ ..+...||++++|++|++++.|++++
T Consensus 184 ~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 184 KEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999865 99999999996 47788899999999999999998765
No 30
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.2e-39 Score=333.30 Aligned_cols=182 Identities=34% Similarity=0.463 Sum_probs=161.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|+.+|+ +|+|.++|.++... ++++|||+|++.+++.+||+||+.+.+..+. .
T Consensus 39 lGpNGaGKSTLl~~l~Gl~~p~-----~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~ 110 (306)
T PRK13537 39 LGPNGAGKTTTLRMLLGLTHPD-----AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---L 110 (306)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---C
Confidence 6999999999999999999987 89999999987542 3569999999999999999999998766532 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...+..++++++++.++|.+.+++ .+++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~ 185 (306)
T PRK13537 111 SAAAARALVPPLLEFAKLENKADA-----KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 185 (306)
T ss_pred CHHHHHHHHHHHHHHcCCchHhcC-----chhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 344556678899999999766655 456899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|+|||++||++. ++...||++++|++|++++.|++++
T Consensus 186 ~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 186 ARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 88999999999974 7888999999999999999998876
No 31
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.2e-39 Score=338.25 Aligned_cols=182 Identities=26% Similarity=0.417 Sum_probs=162.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCccee--eEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLS--GLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~--G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|||||||||||++|+|+.+|+ + |+|.++|+++... .+.+|||+|+..+|+.+||+||+.|+...+ .
T Consensus 37 lGpsGsGKSTLLr~iaGl~~p~-----~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~ 108 (362)
T TIGR03258 37 IGKSGCGKTTLLRAIAGFVKAA-----GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---K 108 (362)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---C
Confidence 5999999999999999999987 7 9999999987542 356999999999999999999999987543 2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
.++.+.+++++++++.+||++..| +++++|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++
T Consensus 109 ~~~~~~~~~v~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 109 MPKADIAERVADALKLVGLGDAAA-----HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred CCHHHHHHHHHHHHHhcCCCchhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 345666778999999999976554 467799999999999999999999999999999999999999999999999
Q ss_pred HhC--CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 156 AQD--GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 156 a~~--g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.++ |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 184 ~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 184 HEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 876 79999999996 47888999999999999999999876
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3e-39 Score=339.76 Aligned_cols=182 Identities=27% Similarity=0.418 Sum_probs=162.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+|||||||||||++|+|+.+|+ +|+|.++|+++... ++.+|||+|+..+||++||.||+.|+...+ ..+
T Consensus 46 lGpsGsGKSTLLr~IaGl~~p~-----~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~ 117 (375)
T PRK09452 46 LGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTP 117 (375)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999986543 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+.+.+++++++++.+||++..| +++++|||||||||+|||+|+.+|++|+||||++|||..++..+.+.|+++.+
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~-----~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQ-----RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5566678999999999976554 46789999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 193 ~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 193 KLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 4 89999999997 47888999999999999999998766
No 33
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=310.45 Aligned_cols=184 Identities=32% Similarity=0.494 Sum_probs=160.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||||+|.|+.+++ +|+|.+||.++... ++++||++|+..+.+.+||.+|+..+..-+.
T Consensus 36 IG~SGaGKSTLLR~lngl~d~t-----~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~ 110 (258)
T COG3638 36 IGPSGAGKSTLLRSLNGLVDPT-----SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT 110 (258)
T ss_pred ECCCCCcHHHHHHHHhcccCCC-----cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence 6999999999999999999887 89999999876543 2459999999999999999999988754332
Q ss_pred C------CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHH
Q 008843 73 P------EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (551)
Q Consensus 73 ~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~ 146 (551)
+ ...++++ +..+-+.|+++|+.+.+-. +...|||||+|||+|||+|+++|++++.|||+++|||.++.
T Consensus 111 s~~~slfglfsk~d-k~~Al~aLervgi~~~A~q-----ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~ 184 (258)
T COG3638 111 STWRSLFGLFSKED-KAQALDALERVGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAK 184 (258)
T ss_pred hHHHHHhCCCCHHH-HHHHHHHHHHcCcHHHHHH-----HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHH
Confidence 2 1233444 4567789999999776654 45689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 147 KVMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 147 ~i~~~L~~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|+.|++++ ++|.|||++.||. +.+.++|||++-|++|+++|+||+++
T Consensus 185 ~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 185 KVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhh
Confidence 9999999998 5689999999996 47788899999999999999999988
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.6e-39 Score=336.41 Aligned_cols=185 Identities=30% Similarity=0.428 Sum_probs=162.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC-CCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-EIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~-~~~ 76 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++++|||+|+..+++.+||+||+.|....+.. ...
T Consensus 34 lGpsGsGKSTLLr~IaGl~~p~-----~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~ 108 (353)
T PRK10851 34 LGPSGSGKTTLLRIIAGLEHQT-----SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP 108 (353)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence 5999999999999999999887 89999999987532 35699999999999999999999998654211 123
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
++++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus 109 ~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 183 (353)
T PRK10851 109 NAAAIKAKVTQLLEMVQLAHLA-----DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183 (353)
T ss_pred CHHHHHHHHHHHHHHcCCchhh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 4556677899999999996554 45678999999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++ |.|+|++||++ .++..++|++++|++|++++.|++++
T Consensus 184 ~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 184 EELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 65 89999999997 47888999999999999999998765
No 35
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-39 Score=316.61 Aligned_cols=183 Identities=34% Similarity=0.480 Sum_probs=157.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++.++||+|++.+++.+||.||+.+......
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 106 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGLLRPD-----SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT 106 (235)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence 6999999999999999999887 89999999886431 2459999999999999999999988754321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.....+..++++++++.+||.+..+ +.+++|||||||||+||++|+.+|++++|||||+|||+.++..+++.|
T Consensus 107 --~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l 179 (235)
T cd03261 107 --RLSEEEIREIVLEKLEAVGLRGAED-----LYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179 (235)
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 1234455677889999999965443 456789999999999999999999999999999999999999999999
Q ss_pred HHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++ .|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus 180 ~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 180 RSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHH
Confidence 99987 4899999999975 6778899999999999999987654
No 36
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-39 Score=307.66 Aligned_cols=181 Identities=31% Similarity=0.451 Sum_probs=159.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCC--CCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED--LFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l~~ 72 (551)
+|+||||||||.++|+|+.+|+ +|+|.++|++.... .+.+-+|+||+ .+.|..||++.|.-.....
T Consensus 39 vGeSGsGKSTL~r~l~Gl~~p~-----~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~- 112 (252)
T COG1124 39 VGESGSGKSTLARLLAGLEKPS-----SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH- 112 (252)
T ss_pred EcCCCCCHHHHHHHHhcccCCC-----CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC-
Confidence 6999999999999999999997 89999999887653 34599999997 6899999999998776542
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
..++. ++++.++++.+||. ..+.++++.+||||||||++|||||+.+|++|+||||||+||+..+.+|+++|
T Consensus 113 --~~~~~--~~~i~~~L~~VgL~----~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL 184 (252)
T COG1124 113 --GLSKS--QQRIAELLDQVGLP----PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL 184 (252)
T ss_pred --CccHH--HHHHHHHHHHcCCC----HHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHH
Confidence 23333 34499999999995 45567789999999999999999999999999999999999999999999999
Q ss_pred HHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.++.+ .|.|.|+++||. ..+.++|||+++|++|++++.+++++
T Consensus 185 ~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~~ 228 (252)
T COG1124 185 LELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEE 228 (252)
T ss_pred HHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechhh
Confidence 99985 477999999995 58899999999999999999999887
No 37
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-39 Score=336.39 Aligned_cols=182 Identities=25% Similarity=0.388 Sum_probs=161.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++.+|||+|+..+||++||.||+.|+...+ ..+
T Consensus 51 lGpsGsGKSTLLr~IaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~ 122 (377)
T PRK11607 51 LGASGCGKSTLLRMLAGFEQPT-----AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLP 122 (377)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999986543 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+.+.+++++++++.+||.+.. ++++++|||||||||+|||+|+.+|++|+|||||+|||..++.++.+.|+++.+
T Consensus 123 ~~~~~~~v~~~l~~l~L~~~~-----~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 123 KAEIASRVNEMLGLVHMQEFA-----KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred HHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 566677899999999996544 456789999999999999999999999999999999999999999999999875
Q ss_pred -CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 -~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 198 ~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 198 RVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred hcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 589999999996 47889999999999999999999876
No 38
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9.3e-39 Score=328.40 Aligned_cols=182 Identities=31% Similarity=0.467 Sum_probs=160.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+|+|+|+++|+ +|+|.++|+++... ++++||++|++.+++.+||+||+.+.+..+. .
T Consensus 25 ~G~NGaGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~ 96 (302)
T TIGR01188 25 LGPNGAGKTTTIRMLTTLLRPT-----SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG---L 96 (302)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC---C
Confidence 6999999999999999999987 89999999987532 2459999999999999999999998766532 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...+.+++++++++.+||.+..|+ .++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 97 ~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 97 PKDEAEERAEELLELFELGEAADR-----PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred CHHHHHHHHHHHHHHcCChhHhCC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 344556678999999999765554 567899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|+|||++||++. ++...||++++|++|++++.|++++
T Consensus 172 ~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 210 (302)
T TIGR01188 172 EEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEE 210 (302)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 88999999999964 7888899999999999999998765
No 39
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.1e-38 Score=331.44 Aligned_cols=182 Identities=27% Similarity=0.403 Sum_probs=161.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+|||||||||||++|+|+.+|+ +|+|.++|+++... ++.++||+|+..+|+++||+||+.+.....
T Consensus 25 ~G~sGsGKSTLLr~L~Gl~~p~-----~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 25 MGLSGSGKSTTVRMLNRLIEPT-----AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL 99 (363)
T ss_pred ECCCCChHHHHHHHHhCCCCCC-----ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence 6999999999999999999987 89999999987642 346999999999999999999999987643
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
...+++..+++.++++.+||++.. +++++.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.
T Consensus 100 ---~~~~~~~~~~~~~~l~~vgL~~~~-----~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~ 171 (363)
T TIGR01186 100 ---GWPEQERKEKALELLKLVGLEEYE-----HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171 (363)
T ss_pred ---CCCHHHHHHHHHHHHHhcCCchhh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 234566778899999999996544 456778999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|+++.++ |+|||++||++. ++..++|++++|++|+++..|++++
T Consensus 172 l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~e 216 (363)
T TIGR01186 172 LKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDE 216 (363)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 9999754 899999999964 6788899999999999999998765
No 40
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-38 Score=308.16 Aligned_cols=181 Identities=34% Similarity=0.507 Sum_probs=156.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++....+.++||+|++.+++.+||+||+.+....+. ....+
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~ 107 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGLERPT-----SGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAE 107 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHH
Confidence 5999999999999999999887 899999999886555679999999999999999999998764331 22344
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g 159 (551)
..++++++++.+||.+..+ +.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus 108 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~ 182 (220)
T cd03293 108 ARERAEELLELVGLSGFEN-----AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG 182 (220)
T ss_pred HHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999965444 35678999999999999999999999999999999999999999999999965 58
Q ss_pred CEEEEEecCCchhHHhhcccEEEEc--CCeEEEecCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLT--EGKLVYAGPAR 195 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 195 (551)
+|||+++|++. ++...+|++++|+ +|+++..++.+
T Consensus 183 ~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 183 KTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999975 6778899999999 79999888753
No 41
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=332.54 Aligned_cols=182 Identities=31% Similarity=0.436 Sum_probs=160.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... .+.+|||+|+..+++.+||+||+.|....+. ..
T Consensus 35 ~G~nGsGKSTLL~~iaGl~~p~-----~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~ 106 (369)
T PRK11000 35 VGPSGCGKSTLLRMIAGLEDIT-----SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AK 106 (369)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CC
Confidence 5999999999999999999887 89999999987532 3569999999999999999999998865431 23
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
..+.+++++++++.+||.+..| +.+++|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+
T Consensus 107 ~~~~~~~~~~~l~~lgL~~~~~-----~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 107 KEEINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred HHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 4556678999999999965544 45678999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++||++. ++..++|++++|++|+++..|++++
T Consensus 182 ~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 182 RLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 5 899999999974 7888899999999999999998765
No 42
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.8e-38 Score=327.92 Aligned_cols=182 Identities=32% Similarity=0.459 Sum_probs=160.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++++||++|+..+++.+||.||+.+....+. .
T Consensus 73 lGpNGaGKSTLl~~L~Gl~~p~-----~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~ 144 (340)
T PRK13536 73 LGPNGAGKSTIARMILGMTSPD-----AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---M 144 (340)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-----ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---C
Confidence 6999999999999999999987 89999999987532 3469999999999999999999998665431 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...+..++++++++.+||.+..++ .+++||||||||++||++|+++|++++|||||+|||+.++.++.+.|++++
T Consensus 145 ~~~~~~~~~~~ll~~~~L~~~~~~-----~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 145 STREIEAVIPSLLEFARLESKADA-----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred CHHHHHHHHHHHHHHcCCchhhCC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 334455678889999999766554 456899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|+|||++||++ .++...||++++|++|++++.|++++
T Consensus 220 ~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 220 ARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 8899999999996 47888999999999999999999876
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-38 Score=307.00 Aligned_cols=178 Identities=33% Similarity=0.485 Sum_probs=153.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... .++++|++|++.+++.+|++||+.+..... ...
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~ 103 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGLERPD-----SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVP 103 (213)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCC
Confidence 5999999999999999999887 89999999987532 346999999999999999999998875432 123
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
..+.+++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 104 KAEIRARVRELLELVGLEGLLN-----RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178 (213)
T ss_pred HHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 3445567889999999965544 35678999999999999999999999999999999999999999999999986
Q ss_pred -CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 158 -~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
.|+|||+++|++. .+...+|++++|++|++++.|
T Consensus 179 ~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 179 ELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 4899999999974 677889999999999998765
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4e-38 Score=312.23 Aligned_cols=185 Identities=30% Similarity=0.457 Sum_probs=157.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|+.+|. +|+|.++|.++... +..++|++|++.+++.+||+||+.+........
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~ 106 (236)
T cd03219 32 IGPNGAGKTTLFNLISGFLRPT-----SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS 106 (236)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence 5999999999999999999887 89999999987542 134999999999999999999998876432111
Q ss_pred C-------CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 75 I-------LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 75 ~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
. ....+..++++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 181 (236)
T cd03219 107 GLLLARARREEREARERAEELLERVGLADLAD-----RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181 (236)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCccchhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0 013344567889999999965443 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.+.|++++++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 182 l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 182 LAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred HHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHH
Confidence 99999999878999999999975 6778899999999999999887654
No 45
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.6e-38 Score=308.50 Aligned_cols=174 Identities=27% Similarity=0.423 Sum_probs=150.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++.++|++|++.+++.+||.||+.+....+.
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 109 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILGIEKPT-----RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG 109 (216)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence 5999999999999999999887 89999999986431 2459999999999999999999998765421
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
....+.+++++++++.+||.+..+ +.+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 110 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (216)
T TIGR00960 110 ---VPPRDANERVSAALEKVGLEGKAH-----ALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF 181 (216)
T ss_pred ---CCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 223445567899999999965544 456789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
++++++|.|||+++|++. .+...+|++++|++|++
T Consensus 182 ~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 182 EEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999878999999999974 67778999999999974
No 46
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-38 Score=307.93 Aligned_cols=182 Identities=31% Similarity=0.474 Sum_probs=157.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|.++... +++++|++|+..+++.+||+||+.+....+. .
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~ 103 (220)
T cd03265 32 LGPNGAGKTTTIKMLTTLLKPT-----SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---V 103 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---C
Confidence 5999999999999999999887 89999999876431 2469999999999999999999998765431 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...+.+++++++++.+||.+..| .+++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (220)
T cd03265 104 PGAERRERIDELLDFVGLLEAAD-----RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 23445567899999999965544 4567899999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++ |+|||+++|++. ++...+|++++|++|+++..|++++
T Consensus 179 ~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 179 EEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 76 899999999975 6778899999999999998887654
No 47
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=312.33 Aligned_cols=182 Identities=34% Similarity=0.468 Sum_probs=160.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc------ccceEEEEccCC-CCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQED-LFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~------~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+++|. +|+|.++|.+... .++++|||+|++ ..+-.-||.|.+.|+..-.
T Consensus 36 ~G~nGsGKSTL~~~l~GLl~p~-----~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~-- 108 (235)
T COG1122 36 IGPNGSGKSTLLKLLNGLLKPT-----SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL-- 108 (235)
T ss_pred ECCCCCCHHHHHHHHcCcCcCC-----CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc--
Confidence 5999999999999999999997 7999999998652 246799999997 3344459999999987643
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
..+.++.+++++++++.+|+.+.+| +.+..|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.++
T Consensus 109 -g~~~~e~~~rv~~~l~~vgl~~~~~-----r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 109 -GLPREEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred -CCCHHHHHHHHHHHHHHcCchhhcc-----CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 2456678899999999999976654 5678999999999999999999999999999999999999999999999
Q ss_pred HHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.++ |+|+|++|||. ..+...+|++++|++|+++++|++.+
T Consensus 183 ~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 183 KLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred HHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHH
Confidence 99977 68999999996 57888899999999999999998755
No 48
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.4e-38 Score=309.51 Aligned_cols=182 Identities=28% Similarity=0.494 Sum_probs=157.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||||+|+|+.+|+ +|+|.++|++.... ++.++|++|++.+++.+||+||+.+....+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-- 104 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGLVKPD-----SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG-- 104 (232)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC--
Confidence 5999999999999999999887 89999999976431 1359999999999999999999988654321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....+..++++++++.+|+.+..+ ..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 105 -~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 105 -LSKKEREEKLEELLEEFHITHLRK-----SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred -CCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 223444567889999999965444 45678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++|+|||+++|++. .+...+|++++|++|++++.|+.++
T Consensus 179 ~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 179 LKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHH
Confidence 9888999999999975 6888899999999999999887654
No 49
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=9e-38 Score=323.95 Aligned_cols=182 Identities=29% Similarity=0.449 Sum_probs=160.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... .++++|++|+..+++.+||+||+.|....+ ...
T Consensus 2 ~G~nGsGKSTLl~~iaGl~~p~-----~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~ 73 (325)
T TIGR01187 2 LGPSGCGKTTLLRLLAGFEQPD-----SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVP 73 (325)
T ss_pred cCCCCCCHHHHHHHHHCCCCCC-----ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCC
Confidence 6999999999999999999887 89999999987542 356999999999999999999999986542 123
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+.+.+++++++++.+||.+..| +.+++|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 74 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 74 RAEIKPRVLEALRLVQLEEFAD-----RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHHHHHHHcCCcchhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 4455677899999999965544 45778999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |+|+|++||++. ++..++|++++|++|+++..|++++
T Consensus 149 ~~g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~ 187 (325)
T TIGR01187 149 QLGITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEE 187 (325)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 5 899999999974 7888899999999999999998765
No 50
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=7.3e-38 Score=321.89 Aligned_cols=182 Identities=33% Similarity=0.464 Sum_probs=158.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|+.+|+ +|+|.++|.++... ++++||++|++.+++.+||+||+.+...... .
T Consensus 36 ~G~NGaGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~ 107 (303)
T TIGR01288 36 LGPNGAGKSTIARMLLGMISPD-----RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---M 107 (303)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---C
Confidence 5999999999999999999887 89999999986432 3469999999999999999999987554321 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...+..++++++++.+||.+..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~~~~~~ll~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 108 STREIEAVIPSLLEFARLESKADV-----RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred CHHHHHHHHHHHHHHCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 334445678889999999765554 456899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|+|||+++|++. ++...||++++|++|++++.|++++
T Consensus 183 ~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 183 ARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 88999999999974 7888899999999999999998766
No 51
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-37 Score=309.55 Aligned_cols=185 Identities=29% Similarity=0.413 Sum_probs=156.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC-CCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-EIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~-~~~ 76 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... .+.++|++|++.+++.+||+||+.+....+.. ...
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (239)
T cd03296 34 LGPSGSGKTTLLRLIAGLERPD-----SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP 108 (239)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence 5999999999999999999887 89999999986532 34599999999999999999999887543211 001
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...+..++++++++.+||.+..+ ..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 183 (239)
T cd03296 109 PEAEIRAKVHELLKLVQLDWLAD-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183 (239)
T ss_pred CHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 23344567889999999965444 4567899999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 184 ~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 184 DELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 65 899999999974 6778899999999999999987654
No 52
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=318.20 Aligned_cols=204 Identities=27% Similarity=0.357 Sum_probs=168.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|.++.. .++++|||+|++ .+++ .||.||+.|+..
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~ 111 (288)
T PRK13643 38 IGHTGSGKSTLLQHLNGLLQPT-----EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQ 111 (288)
T ss_pred ECCCCChHHHHHHHHhcCCCCC-----CcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHH
Confidence 5999999999999999999887 8999999998742 124599999986 5665 599999998764
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.. ..+..+.++++.++++.+||. +.. ++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 112 ~~---~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l 183 (288)
T PRK13643 112 NF---GIPKEKAEKIAAEKLEMVGLADEFW-----EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM 183 (288)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhhc-----cCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH
Confidence 32 134556677889999999995 233 346789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCch--hhHHhhcCCCCCCCCCHHHHH
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEP--LAYFSRFGYTCPDHVNPAEFL 219 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~--~~~f~~~g~~~p~~~~~ad~~ 219 (551)
.+.|++++++|+|||++||++. .+...||++++|++|++++.|++++.. .+.++..|+.+|.....++.+
T Consensus 184 ~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 184 MQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred HHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 9999999888999999999974 677889999999999999999987621 234556677777655555444
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.7e-37 Score=303.04 Aligned_cols=178 Identities=29% Similarity=0.461 Sum_probs=154.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|+.+|. +|+|.++|.++... .++++|++|++.+++.+||+||+.+....+ ...
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~ 103 (213)
T cd03301 32 LGPSGCGKTTTLRMIAGLEEPT-----SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVP 103 (213)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCC
Confidence 5999999999999999999887 89999999987532 246999999999999999999998875432 123
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
.++.+++++++++.+|+.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 104 KDEIDERVREVAELLQIEHLLD-----RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHcCCHHHHh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 4455667889999999965544 45678999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+ |+|||+++|++. ++...+|++++|++|++++.|
T Consensus 179 ~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 179 RLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 4 899999999974 677889999999999999875
No 54
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-37 Score=308.19 Aligned_cols=182 Identities=29% Similarity=0.421 Sum_probs=157.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++... ++.++|++|++.+++.+|+.||+.+....+.
T Consensus 37 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (233)
T cd03258 37 IGRSGAGKSTLIRCINGLERPT-----SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG 111 (233)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence 5999999999999999999887 89999999987532 2459999999999999999999988755331
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
....+..+.++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 112 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 112 ---VPKAEIEERVLELLELVGLEDKAD-----AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183 (233)
T ss_pred ---CCHHHHHHHHHHHHHHCCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence 233444567889999999965544 356789999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 184 ~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 184 RDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 999865 899999999974 6778899999999999999887654
No 55
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.6e-37 Score=306.29 Aligned_cols=183 Identities=30% Similarity=0.420 Sum_probs=154.6
Q ss_pred CCCCCCcHHHHHHHHHcCc-----CCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQL-----MASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAA 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~-----~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~ 68 (551)
+||||||||||+|+|+|.. +|. +|+|.++|+++... ++.++|++|++.++ .+||+||+.+..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~~~~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~ 105 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLNDLIPGAPD-----EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGL 105 (227)
T ss_pred ECCCCCCHHHHHHHHHhhcccccCCCC-----CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHH
Confidence 5999999999999999998 665 89999999986431 24599999999888 789999998876
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
..+. .....+.+++++++++.+||.+..+.... +++||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 106 ~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 180 (227)
T cd03260 106 RLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180 (227)
T ss_pred HhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 5321 11223345678899999999765443210 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++++++ +|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 181 ~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 181 EELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999877 99999999975 6778899999999999999998765
No 56
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=324.76 Aligned_cols=182 Identities=28% Similarity=0.405 Sum_probs=159.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|.++... ++++|||+|+..+++.+||+||+.+.....
T Consensus 37 iG~nGsGKSTLlk~L~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~- 110 (343)
T PRK11153 37 IGASGAGKSTLIRCINLLERPT-----SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA- 110 (343)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc-
Confidence 6999999999999999999887 89999999987532 245999999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
..+..+.+++++++++.+||.+..+ +++++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 111 --~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 111 --GTPKAEIKARVTELLELVGLSDKAD-----RYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1234455677899999999976554 456789999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++ |+|||++||++. .+..+||++++|++|++++.|++++
T Consensus 184 ~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 184 KDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999864 899999999974 6788899999999999999998755
No 57
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=309.31 Aligned_cols=185 Identities=30% Similarity=0.460 Sum_probs=155.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++.++|++|++.+++.+||+||+.+......
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 107 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGLVEPT-----SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107 (241)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence 5999999999999999999887 89999999886532 2459999999999999999999987542110
Q ss_pred -----CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 73 -----PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 73 -----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
.......+..++++++++.+||.+..+ ..+++||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 182 (241)
T cd03256 108 STWRSLFGLFPKEEKQRALAALERVGLLDKAY-----QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182 (241)
T ss_pred hhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 000111234467888999999965443 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.+.|+++++ .|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 183 l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 183 VMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHH
Confidence 9999999986 4899999999975 6777899999999999999988765
No 58
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.9e-37 Score=306.51 Aligned_cols=184 Identities=33% Similarity=0.452 Sum_probs=156.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++.......+|++|++.+++.+||.||+.+......+ .....+
T Consensus 17 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~ 90 (230)
T TIGR01184 17 IGHSGCGKSTLLNLISGLAQPT-----SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLP-DLSKSE 90 (230)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhccc-CCCHHH
Confidence 5999999999999999999887 8999999998765433468999999999999999999886431111 223445
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-G 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~-g 159 (551)
.+++++++++.+||.+..+ ..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 91 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~ 165 (230)
T TIGR01184 91 RRAIVEEHIALVGLTEAAD-----KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165 (230)
T ss_pred HHHHHHHHHHHcCCHHHHc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC
Confidence 5567889999999965444 456789999999999999999999999999999999999999999999999864 8
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+|||+++|++. ++...+|++++|++|+++..|+..+
T Consensus 166 ~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 166 VTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred CEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 99999999974 6788899999999999998886544
No 59
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3e-37 Score=304.23 Aligned_cols=182 Identities=45% Similarity=0.730 Sum_probs=153.6
Q ss_pred CCCCCCcHHHHHHHHHcCcC---CCCCcceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM---ASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~---~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+ ++ +|+|.++|+++... +++++|++|++.+++.+||+||+.+......+..
T Consensus 39 ~G~nGsGKSTLlk~l~G~~~~~~~~-----~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 113 (226)
T cd03234 39 LGSSGSGKTTLLDAISGRVEGGGTT-----SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK 113 (226)
T ss_pred ECCCCCCHHHHHHHHhCccCCCCCC-----ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc
Confidence 59999999999999999988 55 89999999987532 3569999999999999999999998765432221
Q ss_pred CCHHHHHHHHHH-HHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNS-LLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 76 ~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.......+++++ .++.+++.+.. ++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~ 188 (226)
T cd03234 114 SSDAIRKKRVEDVLLRDLALTRIG-----GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQ 188 (226)
T ss_pred cchHHHHHHHHHHHHHhhcchhhh-----cccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 122223334555 88999985443 456778999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
++++|.|+|+++|++..++...+|++++|++|++++.|
T Consensus 189 ~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 189 LARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 98778999999999755788999999999999998765
No 60
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.1e-37 Score=303.35 Aligned_cols=178 Identities=34% Similarity=0.538 Sum_probs=154.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++... ++.++|++|++.+++.+||+||+.+....+. .
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~ 108 (218)
T cd03266 37 LGPNGAGKTTTLRMLAGLLEPD-----AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---L 108 (218)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---C
Confidence 5999999999999999999887 89999999987532 2459999999999999999999988654421 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...+..++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 109 KGDELTARLEELADRLGMEELLD-----RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183 (218)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHh-----hhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 34455677899999999965554 3567899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
++|+|||+++|++. .+...+|++++|++|++++.|
T Consensus 184 ~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 184 ALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 78999999999974 677889999999999998654
No 61
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-37 Score=301.85 Aligned_cols=178 Identities=31% Similarity=0.528 Sum_probs=154.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|+..+++.+||+||+.+....+. ....
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~ 103 (210)
T cd03269 32 LGPNGAGKTTTIRMILGIILPD-----SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKE 103 (210)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChH
Confidence 5999999999999999999887 89999999877532 3469999999999999999999988765431 2234
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
+.++.++++++.+|+.+..+ ..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~ 178 (210)
T cd03269 104 EARRRIDEWLERLELSEYAN-----KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178 (210)
T ss_pred HHHHHHHHHHHHcCChHHHh-----CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC
Confidence 45567889999999965554 3567899999999999999999999999999999999999999999999998788
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+|||+++|++. .+...+|++++|++|++++.|
T Consensus 179 ~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 179 KTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999974 677789999999999998654
No 62
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.9e-37 Score=303.69 Aligned_cols=173 Identities=36% Similarity=0.523 Sum_probs=149.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|++.+++.+||+||+.+....+
T Consensus 36 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 110 (218)
T cd03255 36 VGPSGSGKSTLLNILGGLDRPT-----SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110 (218)
T ss_pred EcCCCCCHHHHHHHHhCCcCCC-----ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence 5999999999999999999887 89999999986531 235999999999999999999999876543
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
. ....+.+++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 111 ~---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~ 182 (218)
T cd03255 111 G---VPKKERRERAEELLERVGLGDRLN-----HYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL 182 (218)
T ss_pred C---CCHHHHHHHHHHHHHHcCCchhhh-----cChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 1 223344567889999999965444 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 152 L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
|+++++ +|+|||+++|++. .+. .+|++++|++|++
T Consensus 183 l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 183 LRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999987 5899999999975 455 8999999999974
No 63
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=314.16 Aligned_cols=182 Identities=28% Similarity=0.421 Sum_probs=155.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCC-CCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDL-FFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++... ++++|||+|++. .+...||+||+.+.....
T Consensus 39 ~G~nGaGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~- 112 (287)
T PRK13637 39 IGHTGSGKSTLIQHLNGLLKPT-----SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL- 112 (287)
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC-
Confidence 5999999999999999999987 89999999987531 246999999863 333479999999875432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC--cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLV--SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
...+++..++++++++.+||. +.. ++.++.||||||||++||++|+.+|++|+|||||+|||+.++.++.+
T Consensus 113 --~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~ 185 (287)
T PRK13637 113 --GLSEEEIENRVKRAMNIVGLDYEDYK-----DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN 185 (287)
T ss_pred --CCCHHHHHHHHHHHHHHcCCCchhhc-----cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 234566667899999999995 333 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|++++++ |+|||++||++. ++...||++++|++|++++.|++++
T Consensus 186 ~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 186 KIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999865 899999999964 6777899999999999999998765
No 64
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.6e-37 Score=317.46 Aligned_cols=181 Identities=27% Similarity=0.457 Sum_probs=159.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++++||++|++.+++.+||.||+.+.+.++. .
T Consensus 34 ~G~NGaGKTTLl~~l~Gl~~~~-----~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~ 105 (301)
T TIGR03522 34 LGPNGAGKSTTMKIITGYLPPD-----SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---M 105 (301)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---C
Confidence 6999999999999999999887 89999999987542 2469999999999999999999998776532 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
..++..++++++++.+||.+..|+ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 106 KGQLLKQRVEEMIELVGLRPEQHK-----KIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred CHHHHHHHHHHHHHHCCCchHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 334555678999999999766554 567899999999999999999999999999999999999999999999997
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ ++|||+++|++. ++..+|||+++|++|++++.|++++
T Consensus 181 ~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 181 K-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 5 799999999974 7888999999999999999998776
No 65
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.8e-37 Score=308.85 Aligned_cols=185 Identities=30% Similarity=0.403 Sum_probs=154.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|+.+|. +|+|.++|.++... ++.++|++|++.+++.+||+||+.+......
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRLVEPS-----SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK 108 (243)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence 5999999999999999999887 89999999886431 2459999999999999999999987532100
Q ss_pred --C---CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 73 --P---EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 73 --~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
. ......+.+++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 183 (243)
T TIGR02315 109 PTWRSLLGRFSEEDKERALSALERVGLADKAY-----QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183 (243)
T ss_pred cchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 0 00112334567889999999965443 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.+.|++++++ |+|||+++|++. .+...||++++|++|++++.|++++
T Consensus 184 l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 184 VMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHH
Confidence 99999999764 899999999975 6778899999999999999887654
No 66
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-37 Score=307.11 Aligned_cols=184 Identities=29% Similarity=0.501 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... +..++|++|++.+++.+||+||+.+....+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--- 104 (242)
T cd03295 33 IGPSGSGKTTTMKMINRLIEPT-----SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK--- 104 (242)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---
Confidence 5999999999999999999887 89999999986532 2459999999999999999999988754421
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
....+..+.+.++++.+||.+. ...++.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 105 ~~~~~~~~~~~~~l~~l~l~~~---~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~ 181 (242)
T cd03295 105 WPKEKIRERADELLALVGLDPA---EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181 (242)
T ss_pred CCHHHHHHHHHHHHHHcCCCcH---HHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 2334455678899999999640 1234567789999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 156 a~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++ |+|||+++|++. ++...+|++++|++|++++.|++++
T Consensus 182 ~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 182 QQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 864 899999999974 6778899999999999999887654
No 67
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=295.73 Aligned_cols=184 Identities=28% Similarity=0.477 Sum_probs=165.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+|||||||||.+.++.|+.+|+ +|.|.+||.+++.. +..+||+||+...|..|||+||+....+.+..
T Consensus 36 LGPNGAGKTT~Fymi~Glv~~d-----~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~- 109 (243)
T COG1137 36 LGPNGAGKTTTFYMIVGLVRPD-----SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK- 109 (243)
T ss_pred ECCCCCCceeEEEEEEEEEecC-----CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-
Confidence 5999999999999999999998 89999999998754 13499999999999999999999988877532
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
...+.+++++.+++|+++++.|++|. +...||||||||+.|||||+.+|+.++||||++|.||.+..+|-++++.
T Consensus 110 d~~~~~~~~~l~~LL~ef~i~hlr~~-----~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 110 DLKKAERKEELDALLEEFHITHLRDS-----KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred chhHHHHHHHHHHHHHHhchHHHhcC-----cccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence 23345666778999999999777765 4568999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|++.|..|+++-|+-+ +....|||.+++++|+++++|++++
T Consensus 185 L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~e 225 (243)
T COG1137 185 LKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEE 225 (243)
T ss_pred HHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHH
Confidence 9999999999999976 6778899999999999999999987
No 68
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-37 Score=310.80 Aligned_cols=182 Identities=27% Similarity=0.393 Sum_probs=156.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... .++++|++|++.+++.+||+||+.+.....
T Consensus 56 ~G~nGsGKSTLl~~L~Gl~~p~-----~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 56 MGLSGSGKSTLLRCINRLIEPT-----SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 5999999999999999999887 89999999886431 235999999999999999999999875432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
. ....+..++++++++.+||.+..+ ..+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 131 ~---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~ 202 (269)
T cd03294 131 G---VPRAEREERAAEALELVGLEGWEH-----KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202 (269)
T ss_pred C---CCHHHHHHHHHHHHHHcCCHhHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 1 223445567889999999965544 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|++++++ |+|||+++|++. ++...+|++++|++|++++.|++++
T Consensus 203 l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 203 LLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999854 899999999974 6778899999999999999887654
No 69
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.5e-37 Score=302.29 Aligned_cols=181 Identities=36% Similarity=0.556 Sum_probs=156.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... .++++|++|+..+++.+||+||+.+....+. .
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~ 105 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGELRPT-----SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---L 105 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---C
Confidence 5999999999999999999887 89999999987532 2459999999999999999999988765431 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...+..++++++++.+||.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 180 (220)
T cd03263 106 PKSEIKEEVELLLRVLGLTDKANK-----RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhC-----hhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 234445678899999999665544 457899999999999999999999999999999999999999999999997
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ ++|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 181 ~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 181 K-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred c-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 6 599999999975 6777899999999999999987654
No 70
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-37 Score=302.44 Aligned_cols=179 Identities=27% Similarity=0.429 Sum_probs=153.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++.++|++|+..+++.+||+||+.+.....
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGLDTPT-----SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 5999999999999999999887 89999999987532 135999999999999999999999875432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
.....+.+++++++++.+||.+..+ +.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 116 ---~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (233)
T PRK11629 116 ---KKKPAEINSRALEMLAAVGLEHRAN-----HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187 (233)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 1233445567899999999965544 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCC
Q 008843 152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA 194 (551)
Q Consensus 152 L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 194 (551)
|+++++ +|+|||+++|++. ++.. +|++++|++|++++.++.
T Consensus 188 l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 188 LGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 999975 5899999999975 4555 589999999999988875
No 71
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-37 Score=300.41 Aligned_cols=177 Identities=33% Similarity=0.509 Sum_probs=152.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++... ++.++|++|++.+++.+||.||+.+....+. .
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~ 102 (211)
T cd03264 31 LGPNGAGKTTLMRILATLTPPS-----SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---I 102 (211)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---C
Confidence 5999999999999999999887 89999999876532 3459999999999999999999998765431 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
..++.++.++++++.+||.+..| ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 103 PSKEVKARVDEVLELVNLGDRAK-----KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred CHHHHHHHHHHHHHHCCCHHHHh-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 23344567889999999975544 3567899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+ +.|||+++|++. .+...+|++++|++|++++.|
T Consensus 178 ~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 178 E-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 6 589999999974 677789999999999998754
No 72
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-38 Score=301.13 Aligned_cols=186 Identities=31% Similarity=0.448 Sum_probs=164.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc------ceEEEEccCCCCCCCCCHHHHHHHHHHcC---
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA------YKFAYVRQEDLFFSQLTVRETLSLAAELQ--- 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~------~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~--- 71 (551)
+||||||||||+|+|+|.++|+ +|+|.++|++++... ..++.-+|...+|++|||.||+..++..+
T Consensus 36 IGPNGAGKTTlfNlitG~~~P~-----~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~ 110 (250)
T COG0411 36 IGPNGAGKTTLFNLITGFYKPS-----SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL 110 (250)
T ss_pred ECCCCCCceeeeeeecccccCC-----CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence 6999999999999999999998 899999999887542 34888999999999999999999886533
Q ss_pred -----CCCC-CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHH
Q 008843 72 -----LPEI-LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA 145 (551)
Q Consensus 72 -----~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~ 145 (551)
.+.. ...++..+++.++|+.+||.+.+|+.. ++||+|||||+.|||||+++|++|+||||.+||.+..+
T Consensus 111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~ 185 (250)
T COG0411 111 SGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEET 185 (250)
T ss_pred hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHH
Confidence 1111 234666788999999999988887754 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 146 EKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 146 ~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
.++.+.|+++++ .|.||+++.|++. .+..+||||++|+.|+++++|+|+++
T Consensus 186 ~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 186 EELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHH
Confidence 999999999997 5699999999974 79999999999999999999999873
No 73
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.6e-37 Score=327.01 Aligned_cols=184 Identities=31% Similarity=0.503 Sum_probs=159.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC--
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-- 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~-- 73 (551)
+||||||||||||+|+|+++|. +|+|.++|+++... ++++|||+|+..+++.+||+||+.++......
T Consensus 35 iGpNGaGKSTLLk~LaGll~p~-----sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~ 109 (402)
T PRK09536 35 VGPNGAGKTTLLRAINGTLTPT-----AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF 109 (402)
T ss_pred ECCCCchHHHHHHHHhcCCCCC-----CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence 6999999999999999999987 89999999987542 34699999999999999999999886432110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.... .+.+++++++++.+|+.+..|+ .+++||||||||+.|||+|+++|++|+|||||+|||+.++.+++++|+
T Consensus 110 ~~~~-~~~~~~v~~~le~vgl~~~~~~-----~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~ 183 (402)
T PRK09536 110 DTWT-ETDRAAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183 (402)
T ss_pred cCCC-HHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0112 3345678999999999765554 567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|+|||+++|++ .++...|||+++|++|++++.|++++
T Consensus 184 ~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~e 225 (402)
T PRK09536 184 RLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPAD 225 (402)
T ss_pred HHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9998899999999996 47888899999999999999999875
No 74
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.8e-37 Score=300.47 Aligned_cols=174 Identities=33% Similarity=0.517 Sum_probs=151.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+|+|+|..+|. +|+|.++|+++... .+.++|++|++.+++.+||+||+.+....+. .
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~- 102 (208)
T cd03268 32 LGPNGAGKTTTMKIILGLIKPD-----SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I- 102 (208)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C-
Confidence 5999999999999999999887 89999999876431 3459999999999999999999988764321 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
.+++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 103 ---~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (208)
T cd03268 103 ---RKKRIDEVLDVVGLKDSAK-----KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174 (208)
T ss_pred ---cHHHHHHHHHHcCCHHHHh-----hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 1345788999999976554 35678999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+|+|+|+++|++. .+...+|++++|++|++++.|
T Consensus 175 ~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 175 QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 8899999999975 677789999999999998764
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3e-37 Score=303.09 Aligned_cols=180 Identities=29% Similarity=0.452 Sum_probs=153.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++... ++.++|++|++.+++.+|++||+.+......
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-- 104 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGLLPPR-----SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-- 104 (222)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--
Confidence 5999999999999999999887 89999999886532 2359999999999999999999988754321
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKL-GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
..+..++++++++.+ ++.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 105 ---~~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 176 (222)
T cd03224 105 ---RAKRKARLERVYELFPRLKERRK-----QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR 176 (222)
T ss_pred ---chhHHHHHHHHHHHHHhhhhhhh-----CchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 123345567788888 4654433 4567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|+|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 177 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 177 ELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHH
Confidence 99878899999999974 6778899999999999999887654
No 76
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=323.77 Aligned_cols=176 Identities=26% Similarity=0.461 Sum_probs=155.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++.. .+++++||+|+..+++.+||+||+.++..
T Consensus 30 ~G~nGsGKSTLl~~iaGl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-- 102 (352)
T PRK11144 30 FGRSGAGKTSLINAISGLTRPQ-----KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-- 102 (352)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh--
Confidence 5999999999999999999887 8999999987642 13469999999999999999999988642
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
...+++++++++.+||.+..| +.+++|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.
T Consensus 103 -------~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~ 170 (352)
T PRK11144 103 -------KSMVAQFDKIVALLGIEPLLD-----RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170 (352)
T ss_pred -------hhhHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 122456889999999965544 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|++++++ |+|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 171 L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 171 LERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999865 89999999997 47888999999999999999998765
No 77
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.2e-37 Score=304.61 Aligned_cols=183 Identities=28% Similarity=0.395 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++... ++.++|++|++.+++.+||+||+.+......
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~- 106 (240)
T PRK09493 33 IGPSGSGKSTLLRCINKLEEIT-----SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR- 106 (240)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc-
Confidence 5999999999999999999887 89999999987531 2359999999999999999999987642111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+..+++.++++.+||++..| +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 107 -~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (240)
T PRK09493 107 -GASKEEAEKQARELLAKVGLAERAH-----HYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQ 180 (240)
T ss_pred -CCCHHHHHHHHHHHHHHcCChHHHh-----cChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 1234445567889999999965444 4567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 181 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 181 DLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred HHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHH
Confidence 99878999999999975 6778899999999999999987654
No 78
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=7.3e-37 Score=317.37 Aligned_cols=185 Identities=26% Similarity=0.399 Sum_probs=159.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l 70 (551)
+|+||||||||+++|+|+.+++ +|+|.++|+++... +++++||+|++ .++|.+||.||+.+....
T Consensus 53 vG~sGsGKSTLlk~i~Gl~~p~-----~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~ 127 (331)
T PRK15079 53 VGESGCGKSTFARAIIGLVKAT-----DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127 (331)
T ss_pred ECCCCCCHHHHHHHHHCCCCCC-----CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999886 89999999987532 24599999997 689999999999987543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
..+ ..++++.+++++++++.+||.+ .+.+.++++|||||||||+||++|+.+|++|++||||+|||..++.++++
T Consensus 128 ~~~-~~~~~~~~~~~~~~l~~vgl~~----~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~ 202 (331)
T PRK15079 128 YHP-KLSRQEVKDRVKAMMLKVGLLP----NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN 202 (331)
T ss_pred hcc-CCCHHHHHHHHHHHHHHcCCCh----HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 211 2355667778899999999942 23456788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+|+++.++ |.|+|++|||+. .+...+|++++|++|++++.|++++
T Consensus 203 lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~ 248 (331)
T PRK15079 203 LLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDE 248 (331)
T ss_pred HHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999864 899999999964 6778899999999999999998755
No 79
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.7e-37 Score=299.39 Aligned_cols=174 Identities=31% Similarity=0.458 Sum_probs=150.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|++.+++.+|++||+.+....+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~ 107 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKEELPT-----SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG 107 (214)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence 5999999999999999999887 89999999986531 2359999999999999999999998765431
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
...++.+++++++++.+||.+..+ ..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 108 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 108 ---VPPREIRKRVPAALELVGLSHKHR-----ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred ---CCHHHHHHHHHHHHHHcCCHHHhh-----CChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 234445567889999999965544 356789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
++++++|+|||+++|++. .+...+|++++|++|++
T Consensus 180 ~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 180 KKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999877999999999974 67778999999999974
No 80
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.4e-37 Score=299.17 Aligned_cols=173 Identities=33% Similarity=0.494 Sum_probs=149.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... ++.++|++|++.+++.+||.||+.+....+.
T Consensus 34 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGALTPS-----RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG 108 (214)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence 5999999999999999999887 89999999987531 2459999999999999999999998755321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
....+.+++++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 109 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 180 (214)
T TIGR02673 109 ---KKEREIQRRVGAALRQVGLEHKAD-----AFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLL 180 (214)
T ss_pred ---CCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 223444567889999999965443 356789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
++++++|+|||+++|++. ++...+|++++|++|+
T Consensus 181 ~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 181 KRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999878999999999974 7778899999999985
No 81
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=323.94 Aligned_cols=182 Identities=26% Similarity=0.389 Sum_probs=159.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... +++++||+|+..+++.+||+||+.+....+
T Consensus 60 vG~NGsGKSTLLr~I~Gl~~p~-----sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 60 MGLSGSGKSTMVRLLNRLIEPT-----RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred ECCCCchHHHHHHHHHcCCCCC-----CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 5999999999999999999987 89999999987532 135999999999999999999999986543
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
. ...++.+++++++++.+||.+.. ++++++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.
T Consensus 135 ~---~~~~~~~~~~~e~L~~~gL~~~~-----~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 135 G---INAEERREKALDALRQVGLENYA-----HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred C---CCHHHHHHHHHHHHHHcCCChhh-----hcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 2 23455567788999999996544 346779999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|+++++ .|+|||++||++. ++..++|++++|++|+++..|++++
T Consensus 207 L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~ 251 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDE 251 (400)
T ss_pred HHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHH
Confidence 999975 5899999999964 6778899999999999999987654
No 82
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.2e-37 Score=321.88 Aligned_cols=180 Identities=29% Similarity=0.476 Sum_probs=157.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++.. .++.++|++|++.+++.+||+||+.++....
T Consensus 29 ~G~nGsGKSTLl~~iaGl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 29 FGRSGSGKTTLIRLIAGLTRPD-----EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 5999999999999999999887 8999999988642 1345999999999999999999999875421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
...+.+++++++++.+||.+..| +.+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 104 -----~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 173 (354)
T TIGR02142 104 -----RPSERRISFERVIELLGIGHLLG-----RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173 (354)
T ss_pred -----ChhHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 12344567899999999965554 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|++++++ |+|+|++||++. ++..++|++++|++|+++..|++++
T Consensus 174 L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred HHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHH
Confidence 9999865 899999999974 6788899999999999999998765
No 83
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-37 Score=298.01 Aligned_cols=178 Identities=30% Similarity=0.463 Sum_probs=151.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|+.+|+ +|+|.++|.++... ++.++|++|++.+++.+||+||+.+....+.. .
T Consensus 30 ~G~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~--~- 101 (211)
T cd03298 30 VGPSGSGKSTLLNLIAGFETPQ-----SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK--L- 101 (211)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC--c-
Confidence 5999999999999999999887 89999999987532 34699999999999999999999876432111 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
..+.+++++++++.+||.+..+ ..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 102 TAEDRQAIEVALARVGLAGLEK-----RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176 (211)
T ss_pred cHHHHHHHHHHHHHcCCHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 1234557889999999965444 35678999999999999999999999999999999999999999999999985
Q ss_pred -CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 158 -~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
.|.|||+++|++. ++...+|++++|++|+++..|
T Consensus 177 ~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 177 ETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 4899999999964 677889999999999998654
No 84
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-37 Score=313.11 Aligned_cols=196 Identities=27% Similarity=0.377 Sum_probs=160.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++.. .++++|||+|++ .+++ .||.||+.|...
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~ 112 (290)
T PRK13634 39 IGHTGSGKSTLLQHLNGLLQPT-----SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPM 112 (290)
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHH
Confidence 5999999999999999999887 8999999998742 124599999986 4554 699999998754
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.. .....+.+++++++++.+||. +.. +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l 184 (290)
T PRK13634 113 NF---GVSEEDAKQKAREMIELVGLPEELL-----ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEM 184 (290)
T ss_pred Hc---CCCHHHHHHHHHHHHHHCCCChhhh-----hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 32 233455567789999999995 333 345778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCch--hhHHhhcCCCCCC
Q 008843 149 MEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEP--LAYFSRFGYTCPD 211 (551)
Q Consensus 149 ~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~--~~~f~~~g~~~p~ 211 (551)
.+.|++++++ |.|||++||++. .+...+||+++|++|++++.|++++.. ...+...+..+|.
T Consensus 185 ~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 185 MEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999864 899999999975 678889999999999999999876521 1223444554443
No 85
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=307.24 Aligned_cols=198 Identities=27% Similarity=0.371 Sum_probs=174.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
||-||||||||+|+|.++.+|+ .|+|.++|.++... ++++++|+|+..++|+.||.||..|+.+++
T Consensus 60 MGLSGSGKSTLvR~~NrLiept-----~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~ 134 (386)
T COG4175 60 MGLSGSGKSTLVRLLNRLIEPT-----RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 134 (386)
T ss_pred EecCCCCHHHHHHHHhccCCCC-----CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec
Confidence 6899999999999999999998 89999999987542 245999999999999999999999998875
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
..+++++++++.+.|+.+||+..+ ++++++|||||||||.|||||+.+|+||++|||+|+|||--+.++-+.
T Consensus 135 ---Gv~~~er~~~a~~~l~~VgL~~~~-----~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQde 206 (386)
T COG4175 135 ---GVPKAEREERALEALELVGLEGYA-----DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206 (386)
T ss_pred ---CCCHHHHHHHHHHHHHHcCchhhh-----hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHH
Confidence 367899999999999999996655 457899999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHH
Q 008843 152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLAD 221 (551)
Q Consensus 152 L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~ 221 (551)
|.+|.+ -++||+++|||. ++...+-|||.+|++|+++..|+|++. ...|.+...++|+.+
T Consensus 207 Ll~Lq~~l~KTIvFitHDL-dEAlriG~rIaimkdG~ivQ~Gtp~eI---------l~~PAndYV~~Fv~~ 267 (386)
T COG4175 207 LLELQAKLKKTIVFITHDL-DEALRIGDRIAIMKDGEIVQVGTPEEI---------LLNPANDYVRDFVRN 267 (386)
T ss_pred HHHHHHHhCCeEEEEecCH-HHHHhccceEEEecCCeEEEeCCHHHH---------HcCccHHHHHHHHhc
Confidence 988874 588999999996 588899999999999999999999883 234555555555543
No 86
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-37 Score=309.13 Aligned_cols=182 Identities=29% Similarity=0.371 Sum_probs=155.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++++||++|++. .+...||.||+.+.....
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--- 108 (274)
T PRK13647 37 LGPNGAGKSTLLLHLNGIYLPQ-----RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM--- 108 (274)
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---
Confidence 5999999999999999999887 89999999987542 245999999962 445679999999865422
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.....+.+++++++++.+||.+..+ +.+..||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 109 GLDKDEVERRVEEALKAVRMWDFRD-----KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 2234455567899999999965544 45678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++|.|||++||++. .+...||++++|++|++++.|++++
T Consensus 184 ~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 184 LHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9877999999999964 6777899999999999999998753
No 87
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=305.15 Aligned_cols=181 Identities=31% Similarity=0.484 Sum_probs=156.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++......++|++|+..+++.+||.||+.+....+ .....+
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~ 104 (255)
T PRK11248 33 LGPSGCGKTTLLNLIAGFVPYQ-----HGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQ 104 (255)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHH
Confidence 5999999999999999999887 89999999987654456899999999999999999998865432 123344
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g 159 (551)
..++++++++.+||.+..+ +.+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|
T Consensus 105 ~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g 179 (255)
T PRK11248 105 RLEIAHQMLKKVGLEGAEK-----RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG 179 (255)
T ss_pred HHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 5567899999999965444 45678999999999999999999999999999999999999999999999864 58
Q ss_pred CEEEEEecCCchhHHhhcccEEEEc--CCeEEEecCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLT--EGKLVYAGPAR 195 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 195 (551)
+|||+++|++. .+...||++++|+ +|+++..++.+
T Consensus 180 ~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 180 KQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999975 6778899999998 59999887654
No 88
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-36 Score=297.87 Aligned_cols=176 Identities=32% Similarity=0.479 Sum_probs=151.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++.. .++.++|++|+..+++.+|++||+.+.....
T Consensus 29 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 29 FGASGAGKSTLLRCIAGLEKPD-----GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 5999999999999999999887 8999999987642 1245999999999999999999998765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
.....+++++++++.+|+.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 104 -----~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 104 -----RNREDRISVDELLDLLGLDHLLN-----RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred -----CHHHHHHHHHHHHHHcCCHhHhh-----cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 22334567889999999965443 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
|++++++ |+|||+++|++. ++...+|++++|++|+++..|
T Consensus 174 l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 174 LKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999875 899999999964 677889999999999998765
No 89
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-37 Score=304.61 Aligned_cols=183 Identities=26% Similarity=0.445 Sum_probs=157.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++... ++.++|++|++.+++.+||.||+.+....+.
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-- 107 (241)
T PRK10895 35 LGPNGAGKTTTFYMVVGIVPRD-----AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD-- 107 (241)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--
Confidence 5999999999999999999887 89999999987531 2459999999999999999999987653321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....++.+++++++++.+|+.+.. +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 108 DLSAEQREDRANELMEEFHIEHLR-----DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred ccCHHHHHHHHHHHHHHcCCHHHh-----hcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 123344556788999999996543 345678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++|+|||+++|++. ++...+|++++|++|++++.|++++
T Consensus 183 ~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 183 LRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTE 223 (241)
T ss_pred HHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHH
Confidence 9888999999999974 6788899999999999999887654
No 90
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=9.9e-37 Score=304.93 Aligned_cols=183 Identities=31% Similarity=0.416 Sum_probs=156.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------------cceEEEEccCCCCCCCCCHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------------AYKFAYVRQEDLFFSQLTVRETLSLA 67 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------------~~~i~yv~Q~~~l~~~lTV~e~l~~~ 67 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|++.+++.+||.||+.+.
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 35 IGPSGSGKTTLLRCINLLEQPE-----AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 5999999999999999999887 89999999876421 23599999999999999999999875
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 68 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
..... .....+..+++.++++.+||.+..| ..+++||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 110 ~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 182 (250)
T PRK11264 110 PVIVK--GEPKEEATARARELLAKVGLAGKET-----SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE 182 (250)
T ss_pred HHHhc--CCCHHHHHHHHHHHHHHcCCcchhh-----CChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 43211 1233445567889999999965443 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.+.|++++++|.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 183 l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 183 VLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999888999999999964 6778899999999999999887654
No 91
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-37 Score=315.44 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=160.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------------------cceEEEEccCC--CCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------------------AYKFAYVRQED--LFFSQ 57 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------------------~~~i~yv~Q~~--~l~~~ 57 (551)
+|+||||||||+++|+|+.+|+ +|+|.++|.++... ++++|||+|++ .+++.
T Consensus 58 ~G~nGsGKSTLl~~L~Gl~~p~-----~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~ 132 (320)
T PRK13631 58 IGNSGSGKSTLVTHFNGLIKSK-----YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132 (320)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc
Confidence 5999999999999999999987 89999999876321 24599999986 56664
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCC
Q 008843 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP 136 (551)
Q Consensus 58 lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEP 136 (551)
||+||+.++.... ..+.++..++++++++.+||. +.. ++.+++||||||||++|||+|+.+|++|+||||
T Consensus 133 -tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEP 203 (320)
T PRK13631 133 -TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL-----ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEP 203 (320)
T ss_pred -hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh-----cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999998875422 124455567889999999995 333 445778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc--hhhHHhhcCCCCCC
Q 008843 137 TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE--PLAYFSRFGYTCPD 211 (551)
Q Consensus 137 tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~--~~~~f~~~g~~~p~ 211 (551)
|+|||+.++..+++.|++++++|+|||+++|++. .+...+|++++|++|+++..|++++. ..+.++..|...|.
T Consensus 204 tsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 204 TAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999999999999999999888999999999964 67788999999999999999987652 11233444555443
No 92
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.1e-37 Score=297.48 Aligned_cols=171 Identities=35% Similarity=0.487 Sum_probs=145.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+|||||||||||++|+|+.+|+ +|+|.++|.++... +++++|++|++. .+..+||+||+.+......
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~----- 101 (205)
T cd03226 32 TGKNGAGKTTLAKILAGLIKES-----SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD----- 101 (205)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC-----
Confidence 5999999999999999999887 89999999987432 346999999974 3445799999987653211
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+..++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 102 --~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (205)
T cd03226 102 --AGNEQAETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174 (205)
T ss_pred --ccHHHHHHHHHHcCCchhcC-----CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 11246789999999976554 45678999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEcCCeEE
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV 189 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 189 (551)
+|+|||+++|++. ++...+|++++|++|+++
T Consensus 175 ~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 175 QGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 8999999999975 677789999999999875
No 93
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-37 Score=314.21 Aligned_cols=181 Identities=28% Similarity=0.395 Sum_probs=154.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-----------------------------ccceEEEEccC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----------------------------KAYKFAYVRQE 51 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-----------------------------~~~~i~yv~Q~ 51 (551)
+||||||||||+|+|+|.++|+ +|+|.++|++... .++++|||+|+
T Consensus 39 iG~nGsGKSTLl~~L~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 113 (305)
T PRK13651 39 IGQTGSGKTTFIEHLNALLLPD-----TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113 (305)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence 6999999999999999999987 7999999875410 12459999998
Q ss_pred C--CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCC
Q 008843 52 D--LFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASP 128 (551)
Q Consensus 52 ~--~l~~~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p 128 (551)
+ .++ ..||+||+.|+.... ....++..++++++++.+||. +.. ++.+..||||||||++||++|+.+|
T Consensus 114 ~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGqkqrvalA~aL~~~P 184 (305)
T PRK13651 114 AEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYL-----QRSPFELSGGQKRRVALAGILAMEP 184 (305)
T ss_pred cccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhh-----hCChhhCCHHHHHHHHHHHHHHhCC
Confidence 5 444 469999999876432 234556677899999999995 333 3567899999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 129 SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 129 ~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|+|||||+|||+.++..+++.|++++++|.|||+++|++. .+...+||+++|++|++++.|++++
T Consensus 185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~ 251 (305)
T PRK13651 185 DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYD 251 (305)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999888999999999964 6778899999999999999998766
No 94
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.5e-36 Score=298.02 Aligned_cols=174 Identities=29% Similarity=0.458 Sum_probs=148.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------c-ceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------A-YKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~-~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... + ++++|++|++.+++.+||+||+.+....+
T Consensus 37 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGLDNPT-----SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 5999999999999999999887 89999999986431 1 35999999999999999999999865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
. ....+..+++.++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 112 ~---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 183 (221)
T TIGR02211 112 K---KSVKEAKERAYEMLEKVGLEHRIN-----HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183 (221)
T ss_pred C---CCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 1 223344567889999999965443 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEE
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLV 189 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 189 (551)
|++++++ |+|||+++|++. .+.. +|++++|++|+++
T Consensus 184 l~~~~~~~~~tii~~tH~~~-~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 184 MLELNRELNTSFLVVTHDLE-LAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHhh-cCEEEEEeCCEec
Confidence 9999864 899999999975 4544 7999999999875
No 95
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.4e-36 Score=307.38 Aligned_cols=183 Identities=26% Similarity=0.373 Sum_probs=156.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... +++++|++|+..+++.+||.||+.+......
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 113 (269)
T PRK11831 39 MGPSGIGKTTLLRLIGGQIAPD-----HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113 (269)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence 5999999999999999999887 89999999886531 2359999999999999999999988643211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.....+.++++.++++.+||.+..+. .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 114 --~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (269)
T PRK11831 114 --QLPAPLLHSTVMMKLEAVGLRGAAKL-----MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI 186 (269)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 12334445678889999999765543 56789999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++ |+|||+++|++ ..+...+|++++|++|++++.|++++
T Consensus 187 ~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 187 SELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 999865 89999999996 46778899999999999999987654
No 96
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=309.09 Aligned_cols=181 Identities=27% Similarity=0.396 Sum_probs=156.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|+.+|. +|+|.++|+++... ++++|||+|++ ..++..||+||+.+.....
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--- 110 (279)
T PRK13650 39 IGHNGSGKSTTVRLIDGLLEAE-----SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK--- 110 (279)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---
Confidence 5999999999999999999887 89999999987542 24599999997 4677789999999875432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....++..++++++++.+||.+..| ..++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 111 GIPHEEMKERVNEALELVGMQDFKE-----REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 2345556678899999999975544 45678999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |+|||+++|++. .+ ..+|++++|++|+++..|++++
T Consensus 186 l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 186 IRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9875 999999999975 45 4699999999999999998765
No 97
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=304.52 Aligned_cols=183 Identities=30% Similarity=0.385 Sum_probs=156.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc------------------ccceEEEEccCCCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------------------KAYKFAYVRQEDLFFSQLTVRE 62 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~------------------~~~~i~yv~Q~~~l~~~lTV~e 62 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++.. .+++++|++|++.+++.+||+|
T Consensus 37 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e 111 (257)
T PRK10619 37 IGSSGSGKSTFLRCINFLEKPS-----EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 111 (257)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence 5999999999999999999887 8999999987642 0245999999999999999999
Q ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCC
Q 008843 63 TLSLAAE-LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD 141 (551)
Q Consensus 63 ~l~~~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD 141 (551)
|+.++.. .. .....+.++++.++++.+|+.+.. .+..+++||||||||++||++|+.+|++++|||||+|||
T Consensus 112 nl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 184 (257)
T PRK10619 112 NVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERA----QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184 (257)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhh----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9987542 21 123445567788999999996532 134577999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 142 AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 142 ~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.++..+.+.|++++++|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus 185 ~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 185 PELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999888999999999974 6777899999999999999887654
No 98
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.6e-36 Score=318.81 Aligned_cols=182 Identities=27% Similarity=0.392 Sum_probs=159.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEe----CCcc---------cceEEEEccCCCCCCCCCHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP----SSNK---------AYKFAYVRQEDLFFSQLTVRETLSLA 67 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~----~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~ 67 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|++ +... +++++||+|+..+++.+||+||+.++
T Consensus 56 ~G~nGsGKSTLlr~L~Gl~~p~-----~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~ 130 (382)
T TIGR03415 56 MGLSGSGKSSLLRAVNGLNPVS-----RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG 130 (382)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence 6999999999999999999987 8999999963 2211 13599999999999999999999998
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 68 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
...+ ...+.+.+++++++++.+||.+..| .++.+||||||||++|||+|+.+|++|+|||||+|||+.++.+
T Consensus 131 ~~~~---g~~~~~~~~~a~e~le~vgL~~~~~-----~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 131 LEMQ---GMPEAERRKRVDEQLELVGLAQWAD-----KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHhc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 6543 2345566778899999999965544 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.+.|++++++ |+|||++||++. ++..++|++++|++|+++..|++++
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~e 251 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEE 251 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999864 899999999964 6788899999999999999998765
No 99
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=301.84 Aligned_cols=176 Identities=30% Similarity=0.487 Sum_probs=157.5
Q ss_pred CCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
|+||||||||+|+|+|+.+|+ +|.|.+||+...+ .++++|||+||..+||++||+.||.|+....
T Consensus 31 G~SGsGKTslin~IaGL~rPd-----eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~- 104 (352)
T COG4148 31 GPSGSGKTSLINMIAGLTRPD-----EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS- 104 (352)
T ss_pred cCCCCChhhHHHHHhccCCcc-----ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc-
Confidence 899999999999999999998 8999999986532 2467999999999999999999999986431
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.....+++.+.||++|..+ +++..|||||||||+|||||+++|++|++|||.+.||-....+++-.|
T Consensus 105 --------~~~~fd~iv~lLGI~hLL~-----R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpyl 171 (352)
T COG4148 105 --------MRAQFDQLVALLGIEHLLD-----RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171 (352)
T ss_pred --------chHhHHHHHHHhCcHHHHh-----hCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHH
Confidence 2345788999999976654 578899999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 153 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
++|+++ +..|+.++|.+ +++..++|+|++|++|++...|+.+++
T Consensus 172 ERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 172 ERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred HHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHH
Confidence 999965 67999999996 689999999999999999999998763
No 100
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.6e-36 Score=295.62 Aligned_cols=173 Identities=35% Similarity=0.477 Sum_probs=147.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++.++|++|++. .++.+|++||+.+.....
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~--- 104 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGLLGPT-----SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL--- 104 (211)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---
Confidence 5999999999999999999887 89999999887532 245999999974 466789999998865432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.....+.++.++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 105 GLPEEEIEERVEEALELVGLEGLRD-----RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred CCCHHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1223444567889999999965443 45678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
++++|+|||++||++. ++...||++++|++|+
T Consensus 180 ~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 180 LKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9877999999999964 6778899999999885
No 101
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.2e-36 Score=297.25 Aligned_cols=175 Identities=26% Similarity=0.384 Sum_probs=151.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|++.+++.+|++||+.+....+
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 107 (222)
T PRK10908 34 TGHSGAGKSTLLKLICGIERPS-----AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA- 107 (222)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc-
Confidence 5999999999999999999887 89999999876431 245999999999889999999998875432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
....++..+.++++++.+|+.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 108 --~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (222)
T PRK10908 108 --GASGDDIRRRVSAALDKVGLLDKAK-----NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180 (222)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhh-----CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 1234445567889999999965443 456789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEE
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV 189 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 189 (551)
++++++|.|+|+++|++. .+...+|++++|++|+++
T Consensus 181 ~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 181 EEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999877899999999975 677789999999999986
No 102
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.6e-36 Score=297.53 Aligned_cols=180 Identities=28% Similarity=0.418 Sum_probs=148.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l 70 (551)
+|||||||||||++|+|..+|+ +|+|.++|+++... ++.++|++|++ .+++.+||+||+.+....
T Consensus 37 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~ 111 (228)
T cd03257 37 VGESGSGKSTLARAILGLLKPT-----SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111 (228)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence 5999999999999999999887 89999999987531 24599999998 567789999999886543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.... ......++.++++++.+++. +.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 112 ~~~~-~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 185 (228)
T cd03257 112 HGKL-SKKEARKEAVLLLLVGVGLPEEVL-----NRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185 (228)
T ss_pred ccCC-cHHHHHHHHHHHHHHHCCCChhHh-----hCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 3211 11111222236889999984 333 3456789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 150 ~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+.|++++++ |+|||+++|++. .+...+|++++|++|+++..|
T Consensus 186 ~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 186 DLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 999999875 899999999975 677789999999999998654
No 103
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=304.58 Aligned_cols=175 Identities=28% Similarity=0.380 Sum_probs=152.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|.++...++.++|++|++.+++.+||+||+.+... . .
T Consensus 44 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~ 109 (257)
T PRK11247 44 VGRSGCGKSTLLRLLAGLETPS-----AGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLK----G-----Q 109 (257)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhccc----c-----h
Confidence 5999999999999999999887 899999998875545679999999999999999999987521 0 1
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g 159 (551)
.+++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus 110 ~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~ 184 (257)
T PRK11247 110 WRDAALQALAAVGLADRAN-----EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG 184 (257)
T ss_pred HHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 2356788999999965443 45678999999999999999999999999999999999999999999999865 58
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPAR 195 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 195 (551)
+|||+++|++. .+...+|++++|++|++++.|+.+
T Consensus 185 ~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 185 FTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999975 677789999999999999988764
No 104
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-36 Score=279.50 Aligned_cols=181 Identities=29% Similarity=0.474 Sum_probs=163.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||||+++|..+|. .|+|.+||++++-....-|.|+|++.++|.+||.||+.|+.+++ ...+.+
T Consensus 37 lGpSGcGKTTLLnl~AGf~~P~-----~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~ 108 (259)
T COG4525 37 LGPSGCGKTTLLNLIAGFVTPS-----RGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQ 108 (259)
T ss_pred EcCCCccHHHHHHHHhcCcCcc-----cceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHH
Confidence 5999999999999999999998 89999999999876666799999999999999999999999886 367889
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g 159 (551)
+.+++.+.+..+||++.. ++++-+|||||||||.|||||+.+|++|+||||.+.||.-+++++-++|-++. +.|
T Consensus 109 R~~~a~q~l~~VgL~~~~-----~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg 183 (259)
T COG4525 109 RREIAHQMLALVGLEGAE-----HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG 183 (259)
T ss_pred HHHHHHHHHHHhCccccc-----ccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999997544 45778999999999999999999999999999999999999999999998887 569
Q ss_pred CEEEEEecCCchhHHhhcccEEEEc--CCeEEEecCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLT--EGKLVYAGPAR 195 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 195 (551)
+.++++||+.. +..-+++++++|+ .||++..=+++
T Consensus 184 k~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 184 KQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred CeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999975 5556689999997 58999776665
No 105
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.2e-36 Score=297.15 Aligned_cols=180 Identities=31% Similarity=0.487 Sum_probs=148.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCC--CCCCHHHHHHHHHHcCCCC-CCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF--SQLTVRETLSLAAELQLPE-ILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~--~~lTV~e~l~~~~~l~~~~-~~~ 77 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++...+++++|++|++.+. ..+||+||+.+........ ...
T Consensus 31 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (213)
T cd03235 31 VGPNGAGKSTLLKAILGLLKPT-----SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL 105 (213)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----CCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCC
Confidence 5999999999999999999887 8999999987653345699999998763 3379999998864321100 011
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
.++.+++++++++.+|+.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 106 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (213)
T cd03235 106 SKADKAKVDEALERVGLSELAD-----RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180 (213)
T ss_pred CHHHHHHHHHHHHHcCCHHHHh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 2234567889999999965444 45678999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+|.|||+++|++. ++...+|++++|++| +++.|
T Consensus 181 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 181 EGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 8899999999964 677889999999876 66544
No 106
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.6e-36 Score=299.51 Aligned_cols=181 Identities=32% Similarity=0.529 Sum_probs=154.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|+.+|+ +|+|.++|.++... .+.++|++|++.+++.+|++||+.+....+ ..
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~ 104 (236)
T TIGR03864 33 LGPNGAGKSTLFSLLTRLYVAQ-----EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GL 104 (236)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CC
Confidence 5999999999999999999887 89999999876432 245999999999889999999998765442 12
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...+..+.++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 105 ~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 105 SRAEARERIAALLARLGLAERAD-----DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred CHHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 33444567889999999975544 3566899999999999999999999999999999999999999999999998
Q ss_pred h-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 Q-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ +|.|+|+++|++. .+.. +|++++|++|++++.|++++
T Consensus 180 ~~~~~tiii~sH~~~-~~~~-~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 180 RDQGLSVLWATHLVD-EIEA-DDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HhCCCEEEEEecChh-hHhh-CCEEEEEeCCeEEEeCCHHH
Confidence 5 5899999999975 4554 99999999999998887654
No 107
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=308.50 Aligned_cols=181 Identities=28% Similarity=0.411 Sum_probs=155.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... +..++|++|++ .++ .+||.||+.+...
T Consensus 39 iG~NGaGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~ 112 (287)
T PRK13641 39 VGHTGSGKSTLMQHFNALLKPS-----SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPK 112 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHH
Confidence 5999999999999999999987 89999999986421 23599999996 355 5799999988654
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.. ....++..++++++++.+||. +.. ++.++.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l 184 (287)
T PRK13641 113 NF---GFSEDEAKEKALKWLKKVGLSEDLI-----SKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184 (287)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhHh-----hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 32 123455667789999999995 333 446778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++++++|.|||+++|++. .+...||++++|++|++++.|++++
T Consensus 185 ~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 185 MQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999878999999999964 6788899999999999999998765
No 108
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.4e-36 Score=294.74 Aligned_cols=175 Identities=32% Similarity=0.461 Sum_probs=149.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|++.+++.+|+.||+.+......
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~- 105 (213)
T cd03262 32 IGPSGSGKSTLLRCINLLEEPD-----SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK- 105 (213)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc-
Confidence 5999999999999999999887 89999999987421 2459999999999999999999988643111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++..++++++++.+|+.+..+ +.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 106 -~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 179 (213)
T cd03262 106 -GMSKAEAEERALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179 (213)
T ss_pred -CCCHHHHHHHHHHHHHHcCCHhHhh-----hCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 1233445567889999999965444 4567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
+++++|+|||+++|++. ++...+|++++|++|++
T Consensus 180 ~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 180 DLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99888899999999974 67788999999999974
No 109
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.5e-36 Score=300.56 Aligned_cols=190 Identities=28% Similarity=0.414 Sum_probs=155.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+|+|+|..+|.+....+|+|.++|+++... ++.++|++|+..+++ +|+.||+.+....+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~- 110 (247)
T TIGR00972 33 IGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG- 110 (247)
T ss_pred ECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC-
Confidence 59999999999999999987642112379999999987531 245999999999998 999999998765431
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+..+.++++++.+||.+... ...+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 111 -~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 188 (247)
T TIGR00972 111 -IKDKKELDEIVEESLKKAALWDEVK-DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ 188 (247)
T ss_pred -CCCHHHHHHHHHHHHHHcCCCcchh-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1233455567889999999961110 11234678899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. ++...+|++++|++|++++.|++++
T Consensus 189 ~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 189 ELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9987 489999999974 6778899999999999999987654
No 110
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=302.98 Aligned_cols=185 Identities=25% Similarity=0.408 Sum_probs=155.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC--
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL-- 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~-- 72 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++... +..++|++|++.+++.+||+||+.++.....
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 111 (255)
T PRK11300 37 IGPNGAGKTTVFNCLTGFYKPT-----GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT 111 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence 5999999999999999999887 89999999987532 1348999999999999999999998643211
Q ss_pred ---------CC-CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCH
Q 008843 73 ---------PE-ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA 142 (551)
Q Consensus 73 ---------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~ 142 (551)
+. .....+..++++++++.+||.+..+ ..++.||||||||++||++|+.+|++|+|||||+|||+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 186 (255)
T PRK11300 112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN-----RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP 186 (255)
T ss_pred hhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH
Confidence 00 0011233456788999999965443 45678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 143 FQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 143 ~~~~~i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.++..+.+.|++++++ |+|||+++|++. .+...||++++|++|++++.|++++
T Consensus 187 ~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 187 KETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHH
Confidence 9999999999999875 899999999964 6778899999999999999888654
No 111
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=299.78 Aligned_cols=182 Identities=27% Similarity=0.464 Sum_probs=155.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... .+.++|++|++.+++.+|+.||+.+...... ..
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~- 102 (232)
T PRK10771 31 LGPSGAGKSTLLNLIAGFLTPA-----SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL- 102 (232)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-
Confidence 5999999999999999999887 89999999986532 2469999999999999999999987532111 11
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
....+++++++++.+||.+..| +.++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~ 177 (232)
T PRK10771 103 NAAQREKLHAIARQMGIEDLLA-----RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177 (232)
T ss_pred CHHHHHHHHHHHHHcCcHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 1234567889999999965544 45678999999999999999999999999999999999999999999999976
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |+|+|+++|++. ++...+|++++|++|++++.|++++
T Consensus 178 ~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 178 ERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred hcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4 899999999974 6778899999999999999887654
No 112
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-36 Score=311.36 Aligned_cols=184 Identities=27% Similarity=0.343 Sum_probs=158.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l 70 (551)
+|+||||||||+++|+|++++. +|+|.++|+++... +++++||+|++ .+.+.+||.+++......
T Consensus 47 vG~sGsGKSTLl~~l~gl~~p~-----~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~ 121 (327)
T PRK11308 47 VGESGCGKSTLARLLTMIETPT-----GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI 121 (327)
T ss_pred ECCCCCcHHHHHHHHHcCCCCC-----CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence 6999999999999999999876 89999999987532 24599999997 689999999999876543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.. ...+.+.++++.++++.+||.+ ...+.++++||||||||++||+||+.+|++|++||||+|||..++.++++
T Consensus 122 ~~--~~~~~~~~~~~~~~l~~~gL~~----~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~ 195 (327)
T PRK11308 122 NT--SLSAAERREKALAMMAKVGLRP----EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN 195 (327)
T ss_pred cc--CCCHHHHHHHHHHHHHHCCCCh----HHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH
Confidence 21 2345566778999999999952 22355788999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+|+++.+ .|.|+|++|||.. .+...+|++++|++|++++.|++++
T Consensus 196 lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~ 241 (327)
T PRK11308 196 LMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQ 241 (327)
T ss_pred HHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999986 4899999999964 6778899999999999999998765
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=300.68 Aligned_cols=182 Identities=30% Similarity=0.408 Sum_probs=154.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-----------ccceEEEEccCCCCCCCCCHHHHHHHH-H
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----------KAYKFAYVRQEDLFFSQLTVRETLSLA-A 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTV~e~l~~~-~ 68 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++.. .++.++|++|++.+++.+||.||+.+. .
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 34 LGPSGAGKSSLLRVLNLLEMPR-----SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 5999999999999999999887 8999999997520 123599999999999999999999753 2
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
... .....+..+++.++++.+||.+..+ ..+++||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 109 ~~~---~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l 180 (242)
T PRK11124 109 RVL---GLSKDQALARAEKLLERLRLKPYAD-----RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HHc---CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHH
Confidence 221 1223444567889999999965444 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++++++|+|+|+++|++. .+...+|++++|++|++++.|++++
T Consensus 181 ~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 181 VSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999877999999999975 6677899999999999999887654
No 114
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-36 Score=301.57 Aligned_cols=209 Identities=25% Similarity=0.381 Sum_probs=173.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+|.|||||||+.++|.|++++......+|+|.++|+++... .++|++++|++ .+.|.+||.+.+.-...
T Consensus 37 VGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~ 116 (316)
T COG0444 37 VGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR 116 (316)
T ss_pred EcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHH
Confidence 69999999999999999998432345689999999965321 23599999996 78999999999988776
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.+.... ++++..+++.++|+.+||.+-. .+.+.++++|||||||||.||.||+.+|++||.||||++||...+.+|+
T Consensus 117 ~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl 193 (316)
T COG0444 117 LHGKGL-SKKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQIL 193 (316)
T ss_pred Hhhcch-hhHHHHHHHHHHHHHcCCCCHH--HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHH
Confidence 542111 4567788899999999996422 2557799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHHh
Q 008843 150 EALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLADL 222 (551)
Q Consensus 150 ~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~~ 222 (551)
++|+++.+ .|.++|++|||. ..+.++||||.+|+.|++|+.|++++. +..|.|..+...+..+
T Consensus 194 ~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g~~~~i---------~~~P~HPYT~~Ll~s~ 257 (316)
T COG0444 194 DLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEI---------FKNPKHPYTRGLLNSL 257 (316)
T ss_pred HHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeCCHHHH---------hcCCCChHHHHHHHhC
Confidence 99999996 689999999996 478899999999999999999998763 4556665555554443
No 115
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.3e-34 Score=344.92 Aligned_cols=186 Identities=29% Similarity=0.461 Sum_probs=162.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++.+||++|++.+++.+||+|++.+.++++. .
T Consensus 962 LG~NGAGKSTLLkiLaGLl~Pt-----sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~ 1033 (2272)
T TIGR01257 962 LGHNGAGKTTTLSILTGLLPPT-----SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---R 1033 (2272)
T ss_pred ECCCCChHHHHHHHHhcCCCCC-----ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---C
Confidence 6999999999999999999987 89999999987532 3459999999999999999999999877642 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
..++.+++++++++.+||.+.+|+ .+++|||||||||+||+||+.+|++++|||||+|||+.+++.+.++|++++
T Consensus 1034 ~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257 1034 SWEEAQLEMEAMLEDTGLHHKRNE-----EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 334556778999999999765544 567899999999999999999999999999999999999999999999995
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHH
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYF 202 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f 202 (551)
+|+|||++||++ .++..++||+++|++|+++..|++.+ .++-|
T Consensus 1109 -~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~-Lk~~~ 1151 (2272)
T TIGR01257 1109 -SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLF-LKNCF 1151 (2272)
T ss_pred -CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHH-HHHhc
Confidence 599999999997 47888899999999999999998876 44433
No 116
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-36 Score=306.32 Aligned_cols=182 Identities=29% Similarity=0.449 Sum_probs=155.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCC-CCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDL-FFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|..+|. +|+|.++|+++.. .++.+||++|++. .+...||+||+.+.....
T Consensus 38 ~G~nGaGKSTLl~~i~Gl~~p~-----~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~- 111 (283)
T PRK13636 38 LGGNGAGKSTLFQNLNGILKPS-----SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL- 111 (283)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc-
Confidence 5999999999999999999887 8999999998731 1245999999963 334579999998865432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
..+..+..++++++++.+||.+.. +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 112 --~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l 184 (283)
T PRK13636 112 --KLPEDEVRKRVDNALKRTGIEHLK-----DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL 184 (283)
T ss_pred --CCCHHHHHHHHHHHHHHCCChhhh-----hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 123455567789999999996544 4567789999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++ |+|||+++|++. .+...||++++|++|++++.|++++
T Consensus 185 ~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 185 VEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999865 899999999975 5777899999999999999998766
No 117
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.8e-36 Score=311.26 Aligned_cols=189 Identities=27% Similarity=0.333 Sum_probs=160.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+|+||||||||+++|+|+.+++. ..+|+|.++|+++... .+.++||+|++ .+.+.+|+.+++.....
T Consensus 48 vG~sGsGKSTL~~~l~Gl~~p~~--~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~ 125 (330)
T PRK09473 48 VGESGSGKSQTAFALMGLLAANG--RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLM 125 (330)
T ss_pred ECCCCchHHHHHHHHHcCCCCCC--CCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHH
Confidence 69999999999999999998741 2389999999987532 13599999997 68899999999987654
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
... .....+..+++.++++.+||.+..+ ..+.++++|||||||||+||++|+.+|++|++||||+|||..++.+++
T Consensus 126 ~~~--~~~~~~~~~~~~~~L~~vgL~~~~~--~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~ 201 (330)
T PRK09473 126 LHK--GMSKAEAFEESVRMLDAVKMPEARK--RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIM 201 (330)
T ss_pred Hhc--CCCHHHHHHHHHHHHHHcCCCChHH--HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH
Confidence 432 2345566678899999999964322 234678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|++++++ |.|+|++|||+. .+..++|++++|++|++++.|++++
T Consensus 202 ~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~ 248 (330)
T PRK09473 202 TLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARD 248 (330)
T ss_pred HHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999865 899999999974 6777899999999999999998766
No 118
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5e-36 Score=294.88 Aligned_cols=178 Identities=33% Similarity=0.511 Sum_probs=154.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+++|+|..+|. +|+|.++|.++... .+.++|++|++.+++.+|++||+.+....+. ..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~-- 101 (223)
T TIGR03740 32 LGPNGAGKSTLLKMITGILRPT-----SGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLG---LP-- 101 (223)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC--
Confidence 5999999999999999999887 89999999886543 2469999999999999999999988764321 11
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
++++.++++.+||.+..| ..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 102 --~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~ 174 (223)
T TIGR03740 102 --DSRIDEVLNIVDLTNTGK-----KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG 174 (223)
T ss_pred --HHHHHHHHHHcCCcHHHh-----hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 245778999999975544 4567899999999999999999999999999999999999999999999998789
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+|||+++|++. .+...+|++++|++|++++.|++.+
T Consensus 175 ~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 175 ITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999975 6778899999999999999988653
No 119
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-36 Score=305.48 Aligned_cols=181 Identities=29% Similarity=0.440 Sum_probs=155.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... .+.+||++|++ .++...||.||+.+.....
T Consensus 39 ~G~nGaGKSTLl~~i~G~~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~--- 110 (279)
T PRK13635 39 VGHNGSGKSTLAKLLNGLLLPE-----AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--- 110 (279)
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---
Confidence 5999999999999999999987 89999999987542 24599999997 3677789999998875432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....++..++++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 111 GVPREEMVERVDQALRQVGMEDFLN-----REPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1234555677899999999965544 45678999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |+|||+++|++. .+. .+|++++|++|++++.|++++
T Consensus 186 l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 186 LKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence 9875 899999999976 455 499999999999999998765
No 120
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-36 Score=304.87 Aligned_cols=181 Identities=28% Similarity=0.411 Sum_probs=153.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++... ++.++|++|++ .+++ .||+||+.+...
T Consensus 39 ~G~nGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~ 112 (280)
T PRK13649 39 IGHTGSGKSTIMQLLNGLHVPT-----QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQ 112 (280)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHH
Confidence 5999999999999999999887 89999999986431 24599999996 4555 699999988654
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.. ....++.+++++++++.+||.+ .. +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (280)
T PRK13649 113 NF---GVSQEEAEALAREKLALVGISESLF-----EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKEL 184 (280)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhhh-----hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 32 1234445567889999999952 23 345778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++++++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 185 ~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 185 MTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999877999999999974 6778899999999999999988765
No 121
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=289.46 Aligned_cols=181 Identities=28% Similarity=0.443 Sum_probs=153.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+|+||||||||||+|+|..++. +|+|.++|++++.. +..++||||...+|+.|||+|||..++..+..
T Consensus 35 lG~NGaGKTTlLkti~Gl~~~~-----~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~- 108 (237)
T COG0410 35 LGRNGAGKTTLLKTIMGLVRPR-----SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD- 108 (237)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-
Confidence 6999999999999999999876 89999999998764 23499999999999999999999998765421
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
++..+..++++.+.|- |.+.+ +++...|||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.++
T Consensus 109 ---~~~~~~~~e~v~~lFP~Lker~-----~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 109 ---KEAQERDLEEVYELFPRLKERR-----NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK 180 (237)
T ss_pred ---cccccccHHHHHHHChhHHHHh-----cCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHH
Confidence 1111222666776664 43223 44567899999999999999999999999999999999999999999999
Q ss_pred HHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++ |.||+++.++. ..+.+.+||.++|.+|++++.|++++
T Consensus 181 ~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~e 223 (237)
T COG0410 181 ELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAE 223 (237)
T ss_pred HHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHH
Confidence 99965 77999998885 57788899999999999999999876
No 122
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.4e-36 Score=298.81 Aligned_cols=184 Identities=27% Similarity=0.401 Sum_probs=155.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC-
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP- 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~- 73 (551)
+|||||||||||++|+|..+|+ +|+|.++|.++... ++.++|++|++.+++.+||+||+.+.......
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~ 108 (242)
T TIGR03411 34 IGPNGAGKTTMMDVITGKTRPD-----EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV 108 (242)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence 5999999999999999999887 89999999876532 23599999999999999999999886432110
Q ss_pred -C---CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 74 -E---ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 74 -~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
. ....++.+++++++++.+|+.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~ 183 (242)
T TIGR03411 109 FASLFFRLSAEEKDRIEEVLETIGLADEAD-----RLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA 183 (242)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHH
Confidence 0 0112334567899999999965544 456789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|+++++ ++|||+++|++. .+...||++++|++|+++..|++++
T Consensus 184 ~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 184 ELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999976 789999999964 6788899999999999999887654
No 123
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=307.49 Aligned_cols=181 Identities=26% Similarity=0.449 Sum_probs=155.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++++|||+|++ .+++ .||.||+.+...
T Consensus 39 ~G~nGsGKSTLl~~L~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~ 112 (286)
T PRK13646 39 VGQTGSGKSTLIQNINALLKPT-----TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPK 112 (286)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHH
Confidence 5999999999999999999987 89999999987431 24599999985 4666 499999998754
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.. .....+..++++++++.+||. +.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l 184 (286)
T PRK13646 113 NF---KMNLDEVKNYAHRLLMDLGFSRDVM-----SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184 (286)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhhh-----hCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 32 234455667889999999995 333 345778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++++ .|+|||++||++. .+...+|++++|++|++++.|++++
T Consensus 185 ~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 185 MRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999985 5899999999964 6778899999999999999998765
No 124
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=300.04 Aligned_cols=180 Identities=25% Similarity=0.392 Sum_probs=153.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|+..+++.+||.||+.+.....
T Consensus 37 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 108 (237)
T PRK11614 37 IGANGAGKTTLLGTLCGDPRAT-----SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--- 108 (237)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc---
Confidence 5999999999999999999887 89999999987542 235999999999999999999998864321
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKL-GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
...+.++.++++++.+ ++.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 109 --~~~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 181 (237)
T PRK11614 109 --ERDQFQERIKWVYELFPRLHERRI-----QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIE 181 (237)
T ss_pred --ChhHHHHHHHHHHHHHHHHHHHHh-----CchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 1223344567777877 4654333 3567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|+|||+++|++. ++...+|++++|++|++++.|++++
T Consensus 182 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 182 QLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 99888999999999964 6788899999999999999998765
No 125
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=7.1e-36 Score=291.80 Aligned_cols=179 Identities=28% Similarity=0.463 Sum_probs=152.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++.++|++|++.+++.+|+.||+.+...... ..
T Consensus 30 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~ 101 (213)
T TIGR01277 30 MGPSGAGKSTLLNLIAGFIEPA-----SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KL 101 (213)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---Cc
Confidence 5999999999999999999887 89999999986432 3459999999999999999999987543211 11
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
..+.+++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 102 NAEQQEKVVDAAQQVGIADYLD-----RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred cHHHHHHHHHHHHHcCcHHHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 1223456788999999965444 45678999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
+ |.|||+++|++. .+...+|++++|++|+++..|.
T Consensus 177 ~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 177 ERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 4 899999999964 6677899999999999998874
No 126
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.9e-36 Score=294.78 Aligned_cols=175 Identities=34% Similarity=0.453 Sum_probs=149.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++... .++++|++|++.+++.+||.||+.+....+
T Consensus 42 ~G~nGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~ 116 (228)
T PRK10584 42 IGESGSGKSTLLAILAGLDDGS-----SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR 116 (228)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-----CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence 5999999999999999999887 89999999987532 135999999999999999999998865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
. ....+.+++++++++.+||.+..+ ..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 117 ~---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 188 (228)
T PRK10584 117 G---ESSRQSRNGAKALLEQLGLGKRLD-----HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188 (228)
T ss_pred C---CCHHHHHHHHHHHHHHcCCHhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 1 223445667899999999965444 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEE
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 190 (551)
|++++++ |.|||+++|++. .+. .+|++++|++|++++
T Consensus 189 l~~~~~~~~~tii~~sH~~~-~~~-~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 189 LFSLNREHGTTLILVTHDLQ-LAA-RCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHhcCCEEEEEecCHH-HHH-hCCEEEEEECCEEEe
Confidence 9999764 899999999976 454 499999999999874
No 127
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.5e-36 Score=297.41 Aligned_cols=189 Identities=25% Similarity=0.321 Sum_probs=154.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCC--CCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDL--FFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|.. ...+|+|.++|+++... .+.++|++|++. +++.+|+.|++.+......
T Consensus 18 ~G~nGsGKSTLl~~l~Gl~~p~~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~--- 93 (230)
T TIGR02770 18 VGESGSGKSLTCLAILGLLPPGL-TQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLG--- 93 (230)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcc-CccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcC---
Confidence 59999999999999999998710 00189999999987542 246999999974 6677899999987654321
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
....+.+++++++++.+||.+. +...+..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 94 ~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~ 171 (230)
T TIGR02770 94 KLSKQARALILEALEAVGLPDP--EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171 (230)
T ss_pred ccHHHHHHHHHHHHHHcCCCch--HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 1123345678999999999632 12234567789999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 156 a~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++ |+|||+++|++. ++...+|++++|++|+++..|++++
T Consensus 172 ~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 212 (230)
T TIGR02770 172 RQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKE 212 (230)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 864 899999999975 6778899999999999999887654
No 128
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.9e-37 Score=292.03 Aligned_cols=187 Identities=28% Similarity=0.494 Sum_probs=171.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+|||||||||.+|+|.|+++|+ +|+|.++|.+++.. ..+|||+|.+..+++.+||.|.|.|.+.++ .+++.
T Consensus 34 lG~NGAGKTTtfRmILglle~~-----~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~ 105 (300)
T COG4152 34 LGPNGAGKTTTFRMILGLLEPT-----EGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKA 105 (300)
T ss_pred ecCCCCCccchHHHHhccCCcc-----CceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHH
Confidence 6999999999999999999998 89999999998765 467999999999999999999999999986 46788
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
+.++.++.+|+++++.... .+++.+||.|++|++.+..+++++|++++||||+|||||.+.+.+-+.+.+++++|
T Consensus 106 e~~~~~~~wLer~~i~~~~-----~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 106 EIQKKLQAWLERLEIVGKK-----TKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred HHHHHHHHHHHhccccccc-----cchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 8999999999999996544 34678999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHH
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYF 202 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f 202 (551)
.|||+++|.+ ..+.++||++++|++|+.|.+|+.++ ...-|
T Consensus 181 atIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~-ir~~~ 221 (300)
T COG4152 181 ATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVED-IRRSF 221 (300)
T ss_pred CEEEEecchH-HHHHHHhhhhheecCCceEEeccHHH-HHHhc
Confidence 9999999997 57999999999999999999999887 55444
No 129
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.8e-36 Score=297.95 Aligned_cols=185 Identities=25% Similarity=0.310 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHHcCc--CCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~--~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|+. +|+ +|+|.++|+++... +..++|++|++.+++.+|++|++.+......
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~ 106 (243)
T TIGR01978 32 MGPNGSGKSTLSKTIAGHPSYEVT-----SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR 106 (243)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCC-----cceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh
Confidence 5999999999999999995 455 89999999986532 1238999999999999999999987654221
Q ss_pred C--C--CCCHHHHHHHHHHHHHHcCCCc-ccCccccCCcCC-CCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHH
Q 008843 73 P--E--ILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVR-GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (551)
Q Consensus 73 ~--~--~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~-~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~ 146 (551)
. . .....+..++++++++.+||.+ ..+ ..+. +||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 181 (243)
T TIGR01978 107 SARGEEPLDLLDFLKLLKAKLALLGMDEEFLN-----RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK 181 (243)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhcc-----cccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 1 0 1123344567889999999962 333 3444 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchhHHhh-cccEEEEcCCeEEEecCCCC
Q 008843 147 KVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 147 ~i~~~L~~la~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.+.|++++++|+|||+++|++. .+... +|++++|++|++++.|++++
T Consensus 182 ~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 182 IVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 999999999888999999999975 56666 79999999999999998754
No 130
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-36 Score=303.06 Aligned_cols=182 Identities=24% Similarity=0.363 Sum_probs=153.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc--c-----cceEEEEccCCCC-CCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--K-----AYKFAYVRQEDLF-FSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~--~-----~~~i~yv~Q~~~l-~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++.. . ++.++||+|++.. +...|+.||+.+.....
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~- 106 (271)
T PRK13638 33 VGANGCGKSTLFMNLSGLLRPQ-----KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL- 106 (271)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc-
Confidence 5999999999999999999887 8999999998731 1 2359999999752 34568999998865432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.....+..++++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 107 --~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l 179 (271)
T PRK13638 107 --GVPEAEITRRVDEALTLVDAQHFRH-----QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179 (271)
T ss_pred --CCCHHHHHHHHHHHHHHcCCHhHhc-----CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1233445567889999999966554 356789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++|.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 180 ~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 180 RRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999877999999999974 6778899999999999999998765
No 131
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6e-36 Score=299.75 Aligned_cols=183 Identities=28% Similarity=0.391 Sum_probs=156.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------------------cceEEEEccCCCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------------------AYKFAYVRQEDLFFSQLTVRE 62 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------------------~~~i~yv~Q~~~l~~~lTV~e 62 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++.++|++|++.+++..||.|
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 106 (252)
T TIGR03005 32 IGPSGSGKSTILRILMTLEPID-----EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD 106 (252)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence 5999999999999999999887 89999999876421 245999999999999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCH
Q 008843 63 TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA 142 (551)
Q Consensus 63 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~ 142 (551)
|+.++..... .....+.++.++++++.+|+.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 107 nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 179 (252)
T TIGR03005 107 NVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKAD-----HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179 (252)
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhh-----cChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 9988643111 1234445567889999999965444 45678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 143 FQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 143 ~~~~~i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.++..+.+.|++++++ |.|+|+++|++. .+...+|++++|++|++++.|+.++
T Consensus 180 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 180 ELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999864 899999999974 6778899999999999999887654
No 132
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.9e-36 Score=294.52 Aligned_cols=184 Identities=29% Similarity=0.440 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCC--CCCCHHHHHHHHHHcCCC-CCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF--SQLTVRETLSLAAELQLP-EILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~--~~lTV~e~l~~~~~l~~~-~~~~ 77 (551)
+||||||||||+++|+|..+++ +|+|.++|++....+++++|++|++.++ ..+|+.||+.+....... ....
T Consensus 12 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 86 (223)
T TIGR03771 12 LGPNGAGKTTLLRAILGLIPPA-----KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRP 86 (223)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCC
Confidence 5999999999999999999887 8999999988654445699999998764 347999999875321100 0011
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
..+.+++++++++.+|+.+..+ ..+++||||||||++||++|+.+|+++++||||+|||+.++..+.+.|+++++
T Consensus 87 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 87 CVADFAAVRDALRRVGLTELAD-----RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG 161 (223)
T ss_pred cHHHHHHHHHHHHHhCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 1233456889999999965443 45678999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+|+|+|+++|++. ++...+|+++++ +|++++.|++++
T Consensus 162 ~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~ 198 (223)
T TIGR03771 162 AGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQ 198 (223)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHH
Confidence 8999999999975 688889999999 899999998765
No 133
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-36 Score=297.94 Aligned_cols=192 Identities=31% Similarity=0.391 Sum_probs=156.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..++......+|+|.++|.++... ++.+||++|++.+++.+||.||+.+....+.. .
T Consensus 35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~ 113 (250)
T PRK14247 35 MGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-V 113 (250)
T ss_pred ECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-c
Confidence 59999999999999999987421001389999999987532 24599999999889999999999987543211 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
....+..+.++++++.+||.+..+. ..+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14247 114 KSKKELQERVRWALEKAQLWDEVKD-RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL 192 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCcchhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 1234455678899999998542211 124567899999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++ |+|+|+++|++. .+...+|++++|++|+++..|++++
T Consensus 193 ~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 193 KK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred hc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHH
Confidence 65 899999999975 6778899999999999999988655
No 134
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-36 Score=300.35 Aligned_cols=182 Identities=35% Similarity=0.496 Sum_probs=154.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|+.+|. +|+|.++|.++... .+.++|++|++.+++.+||+||+.+......
T Consensus 34 ~G~nGsGKSTLl~~i~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--- 105 (258)
T PRK13548 34 LGPNGAGKSTLLRALSGELSPD-----SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG--- 105 (258)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---
Confidence 5999999999999999999887 89999999876432 2459999999988888999999988643211
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHh------hCCceEEEeCCCCCCCHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI------ASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~------~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
...++.+++++++++.+||.+..| ..++.||||||||++||++|+ .+|++++|||||+|||+.++..+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~ 180 (258)
T PRK13548 106 LSRAEDDALVAAALAQVDLAHLAG-----RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180 (258)
T ss_pred CCcHHHHHHHHHHHHHcCCHhHhc-----CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 122334456889999999965444 456789999999999999999 599999999999999999999999
Q ss_pred HHHHHHH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|++++ ++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 181 ~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 181 RLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHH
Confidence 9999998 67899999999964 6778899999999999998887654
No 135
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=300.64 Aligned_cols=181 Identities=24% Similarity=0.364 Sum_probs=154.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|+.+|. +|+|.++|+++... ++.++|++|++. +++..|+.+|+.+.....
T Consensus 41 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~--- 112 (269)
T PRK13648 41 VGHNGSGKSTIAKLMIGIEKVK-----SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH--- 112 (269)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---
Confidence 5999999999999999999887 89999999987532 245999999974 677889999998875432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....++..++++++++.+|+.+..| ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 113 AVPYDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1234445567889999999965444 45678999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |+|||+++|++. .+.. +|++++|++|++++.|++++
T Consensus 188 ~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 188 VKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 9864 899999999985 4555 99999999999999998765
No 136
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.4e-36 Score=294.54 Aligned_cols=179 Identities=25% Similarity=0.378 Sum_probs=151.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..+|. +|+|.++|.++... .+.++|++|+..+++.+|+.||+.+....+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-- 104 (230)
T TIGR03410 32 LGRNGVGKTTLLKTLMGLLPVK-----SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP-- 104 (230)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC--
Confidence 5999999999999999999887 89999999886532 2359999999999999999999988754321
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.. ..+.++++++.++ +.+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 105 -~~---~~~~~~~~l~~~~~l~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 175 (230)
T TIGR03410 105 -RR---SRKIPDEIYELFPVLKEML-----GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175 (230)
T ss_pred -cc---hHHHHHHHHHHHHhHHHHh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 11 1234566777776 43333 44677899999999999999999999999999999999999999999999
Q ss_pred HHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++ |+|||+++|++. ++...+|++++|++|+++..|+.++
T Consensus 176 ~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 176 RLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99874 899999999974 6777899999999999999998766
No 137
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=8.6e-36 Score=300.88 Aligned_cols=183 Identities=26% Similarity=0.361 Sum_probs=154.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l 70 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|++ .+++.+||+||+.+....
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 117 (265)
T TIGR02769 43 LGRSGCGKSTLARLLLGLEKPA-----QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH 117 (265)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999887 89999999987531 23599999996 467789999999876432
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.. .....+.+++++++++.+||. +.. +..+++||||||||++||++|+.+|++|+|||||+|||+.++..+.
T Consensus 118 ~~--~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~ 190 (265)
T TIGR02769 118 LT--SLDESEQKARIAELLDMVGLRSEDA-----DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL 190 (265)
T ss_pred hc--CCCHHHHHHHHHHHHHHcCCChhhh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 122334456788999999995 333 3456789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|++++++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 191 ~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (265)
T TIGR02769 191 ELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQ 237 (265)
T ss_pred HHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHH
Confidence 999999865 899999999974 6777899999999999999998765
No 138
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=307.96 Aligned_cols=190 Identities=25% Similarity=0.303 Sum_probs=158.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+|+||||||||+++|+|++++.. ...+|+|.++|+++... .+.++||+|++ .+.|.+||.+++.....
T Consensus 39 vG~sGsGKSTL~~~l~Gll~~~~-~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~ 117 (326)
T PRK11022 39 VGESGSGKSVSSLAIMGLIDYPG-RVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIK 117 (326)
T ss_pred ECCCCChHHHHHHHHHcCCCCCC-CCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHH
Confidence 69999999999999999987421 11389999999987532 12599999997 58899999998876654
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
... ....++.++++.++++.+||.+.. ...+.++++|||||||||+||+||+.+|++|++||||+|||+.++.+++
T Consensus 118 ~~~--~~~~~~~~~~~~~~L~~~gL~~~~--~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il 193 (326)
T PRK11022 118 VHQ--GGNKKTRRQRAIDLLNQVGIPDPA--SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQII 193 (326)
T ss_pred Hhc--CCCHHHHHHHHHHHHHHCCCCChH--HHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 321 124456677899999999996421 1234678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|+++++ .|.|+|++|||.. .+...+|+|++|++|++++.|++++
T Consensus 194 ~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 194 ELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999986 5899999999975 6778899999999999999998765
No 139
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=298.27 Aligned_cols=192 Identities=29% Similarity=0.387 Sum_probs=155.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCC--c-----ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--N-----KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~--~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..+|+.....+|+|.++|+++. . .+++++|++|++.+++.+||.||+.+....+..
T Consensus 36 ~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 115 (253)
T PRK14267 36 MGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL 115 (253)
T ss_pred ECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc
Confidence 599999999999999999876310012799999999874 1 124599999999999999999999887543211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++..++++++++.+|+.+.... ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 116 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 193 (253)
T PRK14267 116 -VKSKKELDERVEWALKKAALWDEVKD-RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLF 193 (253)
T ss_pred -cCCHHHHHHHHHHHHHHcCCccchhh-hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 11234445678889999998432111 1245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 194 ~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 194 ELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9975 689999999974 6778899999999999999988654
No 140
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-36 Score=300.09 Aligned_cols=184 Identities=30% Similarity=0.425 Sum_probs=155.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHc--CCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAEL--QLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l--~~~ 73 (551)
+||||||||||+|+|+|+.+|. +|+|.++|+++... .+.++|++|+..+++.+|+.||+.++... ...
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~ 108 (255)
T PRK11231 34 IGPNGCGKSTLLKCFARLLTPQ-----SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW 108 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence 5999999999999999999887 89999999876431 23599999999888999999999875321 100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
. ....+..++++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 109 ~-~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 182 (255)
T PRK11231 109 G-RLSAEDNARVNQAMEQTRINHLAD-----RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182 (255)
T ss_pred c-CCCHHHHHHHHHHHHHcCCHHHHc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 1 111234456889999999965444 4567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|+|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 183 ~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 183 ELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred HHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHH
Confidence 99877999999999974 7788899999999999999887655
No 141
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=297.10 Aligned_cols=190 Identities=25% Similarity=0.343 Sum_probs=152.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+|+|+|+.+.......+|+|.++|+++... ++.++|++|++.+++ .||+||+.+....+.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~- 115 (253)
T PRK14242 38 IGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG- 115 (253)
T ss_pred ECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC-
Confidence 59999999999999999864100000279999999887421 245999999998888 499999998754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++.++++++.++.+|+.+...+ .-++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 116 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 193 (253)
T PRK14242 116 -VKDKAYLAERVERSLRHAALWDEVKD-RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIH 193 (253)
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhhhH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11233445678889999998532211 1245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |+|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 194 ~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 194 ELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9964 789999999974 6778899999999999999887654
No 142
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=301.72 Aligned_cols=182 Identities=32% Similarity=0.433 Sum_probs=155.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ..+++||+|++. .+...||.||+.+.....
T Consensus 36 ~G~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--- 107 (277)
T PRK13652 36 IGPNGAGKSTLFRHFNGILKPT-----SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL--- 107 (277)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---
Confidence 5999999999999999999887 89999999987532 245999999963 333579999998765432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....++.+++++++++.+||.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 108 GLDEETVAHRVSSALHMLGLEELRDR-----VPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 23344556678999999999655544 5678999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |.|||+++|++. ++...+|++++|++|++++.|++++
T Consensus 183 l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 183 LPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHH
Confidence 9875 899999999974 6778899999999999999998765
No 143
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-35 Score=294.25 Aligned_cols=182 Identities=29% Similarity=0.506 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|+.+|+ +|+|.++|.++... ++.++|++|++.+++.+|+.||+.+..... ...
T Consensus 31 ~G~nG~GKStLl~~l~G~~~p~-----~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~ 102 (235)
T cd03299 31 LGPTGSGKSVLLETIAGFIKPD-----SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVD 102 (235)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCC
Confidence 5999999999999999999887 89999999987542 346999999999999999999998865432 123
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
..+..+.+.++++.+||.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~ 177 (235)
T cd03299 103 KKEIERKVLEIAEMLGIDHLLNR-----KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177 (235)
T ss_pred HHHHHHHHHHHHHHcCChhHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 34555678889999999655543 5678999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |+|+|+++|++. ++...+|++++|++|++++.|+.++
T Consensus 178 ~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 178 EFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred hcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 5 899999999974 6778899999999999999887654
No 144
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.7e-35 Score=293.67 Aligned_cols=178 Identities=29% Similarity=0.477 Sum_probs=151.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEc-cCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVR-QEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~-Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|+ +|+|.++|++.... .++++|++ |++.+++.+||+|++.+....+.
T Consensus 53 ~G~NGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~--- 124 (236)
T cd03267 53 IGPNGAGKTTTLKILSGLLQPT-----SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYD--- 124 (236)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcC---
Confidence 5999999999999999999887 89999999875321 24599998 55678889999999988765421
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
...++..++++++++.+||.+..|+ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 125 ~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 199 (236)
T cd03267 125 LPPARFKKRLDELSELLDLEELLDT-----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199 (236)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 2334455678889999999766654 45689999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 156 a~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+++ |+|||+++|++. .+...+|++++|++|++++.|
T Consensus 200 ~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 200 NRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 864 789999999974 678889999999999998764
No 145
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=301.57 Aligned_cols=181 Identities=28% Similarity=0.380 Sum_probs=155.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+|+|+|..+|+ +|+|.++|.++... .+.++|++|++. .+...||.||+.+.....
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-- 106 (274)
T PRK13644 34 IGKNGSGKSTLALHLNGLLRPQ-----KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL-- 106 (274)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc--
Confidence 5999999999999999999887 89999999987531 245999999975 466689999998865432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+..++++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 107 -~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 107 -CLPPIEIRKRVDRALAEIGLEKYRH-----RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred -CCCHHHHHHHHHHHHHHCCCHHHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1344555677899999999965554 3567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|.|||+++|++. .+ ..+|++++|++|++++.|++++
T Consensus 181 ~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 181 KLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHH
Confidence 99888999999999976 45 4599999999999999998765
No 146
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=326.15 Aligned_cols=188 Identities=23% Similarity=0.324 Sum_probs=159.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+|+|+|+.+|+. .+|+|.++|+++... ++.+|||+|++.+++.+||+||+.+....+...
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 113 (506)
T PRK13549 37 CGENGAGKSTLMKVLSGVYPHGT---YEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGG 113 (506)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccC
Confidence 69999999999999999988620 179999999987532 245999999999999999999998875432111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....++..++++++++.+||.+..| +.+++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 114 IMDYDAMYLRAQKLLAQLKLDINPA-----TPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCcc-----cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 1223445567899999999965554 45678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
++++|.|||+++|++. .+...||++++|++|++++.|++++.
T Consensus 189 l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 189 LKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 9888999999999964 67788999999999999999998773
No 147
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=301.89 Aligned_cols=184 Identities=27% Similarity=0.421 Sum_probs=155.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..+|+.+ .+|+|.++|+++... ++++||++|++. .++..||.||+.+.....
T Consensus 39 ~G~nGaGKSTLl~~l~G~~~p~~g--~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~--- 113 (282)
T PRK13640 39 IGHNGSGKSTISKLINGLLLPDDN--PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR--- 113 (282)
T ss_pred ECCCCCcHHHHHHHHhcccCCCCC--CCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---
Confidence 599999999999999999987621 139999999987542 245999999974 677789999998764332
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
..+.++.+++++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 114 AVPRPEMIKIVRDVLADVGMLDYID-----SEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRK 188 (282)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 2345566678899999999965443 45789999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus 189 l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 189 LKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence 9864 899999999976 45 4699999999999999998765
No 148
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-35 Score=299.85 Aligned_cols=182 Identities=31% Similarity=0.465 Sum_probs=154.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCC-CCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDL-FFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|..++. +|+|.++|+++... .+.++|++|++. .+...||.||+.+.....
T Consensus 34 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~- 107 (275)
T PRK13639 34 LGPNGAGKSTLFLHFNGILKPT-----SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL- 107 (275)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc-
Confidence 5999999999999999999887 89999999987421 245999999963 333469999998764321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.....+..+++.++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 108 --~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 180 (275)
T PRK13639 108 --GLSKEEVEKRVKEALKAVGMEGFEN-----KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180 (275)
T ss_pred --CCCHHHHHHHHHHHHHHCCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 1234455667889999999976554 456789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++|.|||+++|++. .+...||++++|++|++++.|++++
T Consensus 181 ~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 181 YDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999877999999999964 6777899999999999999998765
No 149
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.5e-35 Score=294.21 Aligned_cols=182 Identities=31% Similarity=0.470 Sum_probs=157.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|..++. +|+|.++|.++... ++.++|++|++.+++.+|+.||+.+....+. ..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~ 103 (237)
T TIGR00968 32 LGPSGSGKSTLLRIIAGLEQPD-----SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HP 103 (237)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CC
Confidence 5999999999999999999887 89999999987532 2459999999999999999999988765321 22
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
.....+.++++++.+++.+..| +.++.|||||+||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 178 (237)
T TIGR00968 104 KAKIKARVEELLELVQLEGLGD-----RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178 (237)
T ss_pred HHHHHHHHHHHHHHcCCHhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 3344567789999999954444 45678999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |+|||++||++. ++...+|++++|++|++++.|+.++
T Consensus 179 ~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 179 EVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred hcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHH
Confidence 5 899999999974 6788899999999999999988655
No 150
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=299.35 Aligned_cols=188 Identities=31% Similarity=0.486 Sum_probs=154.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----------cceEEEEccCCCCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----------AYKFAYVRQEDLFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l 70 (551)
+||||||||||+++|+|..+|+.. .+|+|.++|+++... +++++|++|++.+++.+||.||+.+....
T Consensus 36 ~G~nGsGKSTLl~~i~G~~~p~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 113 (262)
T PRK09984 36 LGPSGSGKSTLLRHLSGLITGDKS--AGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALG 113 (262)
T ss_pred ECCCCCCHHHHHHHHhccCCCCCC--CceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcc
Confidence 599999999999999999887511 259999999876421 23599999999999999999999876421
Q ss_pred CCCC-----CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHH
Q 008843 71 QLPE-----ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA 145 (551)
Q Consensus 71 ~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~ 145 (551)
..+. .....+.+++++++++.+||.+..| +.++.||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 188 (262)
T PRK09984 114 STPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188 (262)
T ss_pred cccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----CCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHH
Confidence 1000 0112334567899999999965544 35678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 146 EKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 146 ~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
..+.+.|+++++ +|.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 189 ~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 189 RIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999986 4899999999974 5778899999999999999987654
No 151
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.1e-35 Score=298.71 Aligned_cols=185 Identities=32% Similarity=0.467 Sum_probs=154.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC-C
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-E 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~-~ 74 (551)
+||||||||||+++|+|..+++ +|+|.++|+++... ++.++|++|+..+++.+||.||+.+....... .
T Consensus 33 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (256)
T TIGR03873 33 LGPNGSGKSTLLRLLAGALRPD-----AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW 107 (256)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence 5999999999999999999887 89999999887542 23599999998888889999999875321000 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.....+..+++.++++.+|+.+..+ ..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 108 AGDSPHDAAVVDRALARTELSHLAD-----RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred cCCCHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 0111233457889999999965444 45678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++|.|||+++|++. .+...+|++++|++|+++..|+.++
T Consensus 183 ~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (256)
T TIGR03873 183 LAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPRE 223 (256)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHH
Confidence 9877899999999975 6778899999999999999887654
No 152
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=297.21 Aligned_cols=190 Identities=25% Similarity=0.323 Sum_probs=153.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+|+|+|..++......+|+|.++|+++.. .++.++|++|++.+++ +||+||+.+......
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~- 116 (254)
T PRK14273 39 IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG- 116 (254)
T ss_pred ECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC-
Confidence 5999999999999999998863111137999999987632 1245999999988885 899999998754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+.++++++.++.+++.+... ...+..+++||||||||++|||+|+.+|++++|||||+|||+.++..+++.|+
T Consensus 117 -~~~~~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 194 (254)
T PRK14273 117 -TKDKKKLDEIVEQSLKKSALWNEVK-DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII 194 (254)
T ss_pred -CCCHHHHHHHHHHHHHHhCCchhhH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence 1123344567888999998842111 11244678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ +.|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 195 ~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 195 NLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9964 789999999975 6778899999999999999988655
No 153
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=301.11 Aligned_cols=181 Identities=29% Similarity=0.393 Sum_probs=153.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++... ++++||++|++. .+...||.|++.|.....
T Consensus 42 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-- 114 (280)
T PRK13633 42 LGRNGSGKSTIAKHMNALLIPS-----EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL-- 114 (280)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc--
Confidence 5999999999999999999887 89999999987531 245999999973 233469999999875432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+.+++++++++.+||.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 115 -~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 188 (280)
T PRK13633 115 -GIPPEEIRERVDESLKKVGMYEYRRH-----APHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIK 188 (280)
T ss_pred -CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 12345556778999999999765544 567899999999999999999999999999999999999999999999
Q ss_pred HHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ .|.|||+++|++. ++.. +|++++|++|++++.|++++
T Consensus 189 ~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 189 ELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 9986 4999999999986 4555 99999999999999998765
No 154
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=300.14 Aligned_cols=181 Identities=26% Similarity=0.438 Sum_probs=154.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... +++++|++|++. .++.+||+||+.+.....
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--- 112 (271)
T PRK13632 41 LGHNGSGKSTISKILTGLLKPQ-----SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK--- 112 (271)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---
Confidence 5999999999999999999887 89999999987532 245999999973 677789999998865432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....++.+++++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+++.|++
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 113 KVPPKKMKDIIDDLAKKVGMEDYLD-----KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1234445567899999999965544 45678999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+. .+|++++|++|+++..|++++
T Consensus 188 ~~~~~~~tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 188 LRKTRKKTLISITHDMD-EAI-LADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred HHHhcCcEEEEEEechh-HHh-hCCEEEEEECCEEEEecCHHH
Confidence 9876 589999999986 454 699999999999999988654
No 155
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=306.69 Aligned_cols=192 Identities=19% Similarity=0.217 Sum_probs=155.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCC--CCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDL--FFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~ 69 (551)
+|+||||||||+++|+|+.++.. ...+|+|.++|+++... .+.++||+|++. +.+.+||.+++.....
T Consensus 39 vG~sGsGKSTLl~~i~Gl~~~~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~ 117 (330)
T PRK15093 39 VGESGSGKSLIAKAICGVTKDNW-RVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIP 117 (330)
T ss_pred ECCCCCCHHHHHHHHHccCCCCC-CCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHH
Confidence 69999999999999999986421 01279999999987532 135999999975 6788999999976432
Q ss_pred cCC--CCC-CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHH
Q 008843 70 LQL--PEI-LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (551)
Q Consensus 70 l~~--~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~ 146 (551)
... ... ....+.++++.++++.+||.+.. ...+.++++|||||||||+||+||+.+|++|++||||+|||+.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~ 195 (330)
T PRK15093 118 GWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQA 195 (330)
T ss_pred hhhccccccccHHHHHHHHHHHHHHCCCCChH--HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHH
Confidence 110 000 11234456788999999996422 1235678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 147 KVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 147 ~i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|+++.++ |.|+|++|||+ ..+...+|++++|++|++++.|++++
T Consensus 196 ~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~ 245 (330)
T PRK15093 196 QIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKE 245 (330)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999874 89999999996 47778899999999999999998655
No 156
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=299.36 Aligned_cols=185 Identities=26% Similarity=0.396 Sum_probs=154.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC-C
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-E 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~-~ 74 (551)
+||||||||||+++|+|..+++ +|+|.++|+++... .+.++|++|++.+++.+||+||+.+......+ .
T Consensus 39 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~ 113 (265)
T PRK10253 39 IGPNGCGKSTLLRTLSRLMTPA-----HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF 113 (265)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence 5999999999999999999887 89999999986432 24599999999999999999999875321100 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....+..+++++++++.+||.+.. ++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 114 TRWRKEDEEAVTKAMQATGITHLA-----DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHh-----cCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 001123345688999999996544 446778999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 189 l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 189 LNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9864 899999999974 6888999999999999999988655
No 157
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=299.63 Aligned_cols=185 Identities=28% Similarity=0.355 Sum_probs=154.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC-
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE- 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~- 74 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++.++|++|+..+++.+||.||+.+........
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (265)
T PRK10575 43 IGHNGSGKSTLLKMLGRHQPPS-----EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL 117 (265)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence 5999999999999999999887 89999999876432 235999999988889999999998753211100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.....+.+++++++++.+||.+..+ ..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 118 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 118 GRFGAADREKVEEAISLVGLKPLAH-----RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0111233456889999999965444 45678999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |.|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 193 l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 193 LSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 9865 899999999974 6778899999999999999887654
No 158
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-35 Score=291.50 Aligned_cols=182 Identities=31% Similarity=0.446 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... ++.++|++|+..+++.+|+.||+.+....+. ..
T Consensus 32 ~G~nGsGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~ 103 (232)
T cd03300 32 LGPSGCGKTTLLRLIAGFETPT-----SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LP 103 (232)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CC
Confidence 5999999999999999999887 79999999987542 3469999999999999999999988765432 22
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
....++.++++++.+||.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~-----~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 104 KAEIKERVAEALDLVQLEGYANR-----KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178 (232)
T ss_pred HHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 33445678899999999765543 5678999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |+|||+++|++ .++...+|++++|++|++++.|+.++
T Consensus 179 ~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 179 ELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred HcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHH
Confidence 4 89999999997 46788899999999999998886543
No 159
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=324.08 Aligned_cols=185 Identities=25% Similarity=0.372 Sum_probs=158.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC-C
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL-P 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~-~ 73 (551)
+||||||||||||+|+|..+|+ +|+|.++|.++... ++.++||+|++.+++.+||+||+.++...+. .
T Consensus 36 ~G~NGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 110 (501)
T PRK10762 36 VGENGAGKSTMMKVLTGIYTRD-----AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF 110 (501)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence 6999999999999999999887 89999999987431 2359999999999999999999988653221 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
......+.+++++++++.+||.+..| ++++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (501)
T PRK10762 111 GRIDWKKMYAEADKLLARLNLRFSSD-----KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185 (501)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHH
Confidence 11223444567889999999976554 4567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|.|||+++|++. .+...||++++|++|+++..|++++
T Consensus 186 ~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 186 ELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 99888999999999974 6778899999999999999999876
No 160
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=296.66 Aligned_cols=189 Identities=21% Similarity=0.324 Sum_probs=153.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++......+|+|.++|+++... ++.++|++|++.+++ +|++||+.+....+
T Consensus 44 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-- 120 (258)
T PRK14268 44 IGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH-- 120 (258)
T ss_pred ECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc--
Confidence 59999999999999999987410001289999999886421 245999999998888 89999999875432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++.+++++++++.+|+.+.... ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 121 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 198 (258)
T PRK14268 121 -GANKKDLDGVVENALRSAALWDETSD-RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIM 198 (258)
T ss_pred -CCCHHHHHHHHHHHHHHcCCCcchhh-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence 12334445678889999998432111 1234677899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 199 ~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 199 NLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9965 799999999964 6778899999999999999987654
No 161
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=294.35 Aligned_cols=187 Identities=24% Similarity=0.337 Sum_probs=152.4
Q ss_pred CCCCCCcHHHHHHHHHcC---cCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQ---LMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~---~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l 70 (551)
+||||||||||+|+|+|+ .++. ..+|+|.++|+++... ++.++|++|++.+++ .|+.||+.+....
T Consensus 35 ~G~nGsGKSTLl~~i~Gl~~~~~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~ 110 (250)
T PRK14245 35 IGPSGCGKSTFLRLFNRMNDLIPAT---RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRV 110 (250)
T ss_pred ECCCCCCHHHHHHHHhhhhcccCCC---CCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHH
Confidence 599999999999999997 3331 1279999999987431 235999999998887 5999999887543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
+. ....++.++.++++++.+||.+..++ ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 111 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 187 (250)
T PRK14245 111 NG--VKDNAFIRQRVEETLKGAALWDEVKD-KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187 (250)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCCcchhh-hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 31 11223345678899999998543211 1245678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|++++ +++|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 188 ~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 188 LIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHH
Confidence 999995 4799999999975 6778899999999999999998765
No 162
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-36 Score=274.27 Aligned_cols=184 Identities=30% Similarity=0.409 Sum_probs=161.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------------------cceEEEEccCCCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------------------AYKFAYVRQEDLFFSQLTVRE 62 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------------------~~~i~yv~Q~~~l~~~lTV~e 62 (551)
+|.|||||||+||||.-+..|+ .|.|.+||+.+.-. +.+.|+|+|+.++++.+||.|
T Consensus 38 IGsSGSGKSTfLRCiN~LE~P~-----~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLe 112 (256)
T COG4598 38 IGSSGSGKSTFLRCINFLEKPS-----AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLE 112 (256)
T ss_pred ecCCCCchhHHHHHHHhhcCCC-----CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHH
Confidence 6999999999999999999988 89999999865311 113799999999999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCH
Q 008843 63 TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA 142 (551)
Q Consensus 63 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~ 142 (551)
|+.-+-.--+ ..++.+..++++..|..+|+.+.+| .++..|||||+||++|||||+.+|+++++|||||.|||
T Consensus 113 NViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~-----~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDP 185 (256)
T COG4598 113 NVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185 (256)
T ss_pred HHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhh-----cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCH
Confidence 9876532111 2467788889999999999976654 47889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 143 FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 143 ~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
...-++++.+++||++|+|.+++||.+. ...+...+|+.|++|.+-+.|+|+++
T Consensus 186 ElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 186 ELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeecceecccCChHHH
Confidence 9999999999999999999999999974 66777899999999999999999873
No 163
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=294.73 Aligned_cols=191 Identities=22% Similarity=0.357 Sum_probs=152.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..++.+....+|+|.++|+++... ++.++|++|++.+++. ||.||+.+....+.
T Consensus 37 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~- 114 (251)
T PRK14244 37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG- 114 (251)
T ss_pred ECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-
Confidence 59999999999999999975210001279999999876421 3459999999988886 99999988644321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
......+.++.++++++.+||.+...+. .+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 193 (251)
T PRK14244 115 LAKNKKKLDEIVEKSLTSVGLWEELGDR-LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193 (251)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCchhhhH-hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 1112334456678899999996422111 234578999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 194 ~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 194 ELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9864 899999999975 6778899999999999999887654
No 164
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-35 Score=269.70 Aligned_cols=175 Identities=35% Similarity=0.485 Sum_probs=154.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+|||||||||||-+++|+..++ +|+|.+.|+++... .+.+|+|+|...+.|+||..||+...+.++
T Consensus 42 VG~SGSGKSTLl~vlAGLd~~s-----sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 42 VGPSGSGKSTLLAVLAGLDDPS-----SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred EcCCCCcHHhHHHHHhcCCCCC-----CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 6999999999999999999988 89999999987543 245999999999999999999999988876
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
.. +..+....+.+.|+.+||.+-. +.++++|||||+|||+||||++..|++||.||||-+||..+..+|.++
T Consensus 117 ge---~~~~~~~~A~~lL~~vGLg~Rl-----~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 117 GE---SSADSRAGAKALLEAVGLGKRL-----THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred CC---ccccHHHHHHHHHHHhCccccc-----ccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence 42 2234456688999999996533 347899999999999999999999999999999999999999999999
Q ss_pred HHHHH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEE
Q 008843 152 LRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (551)
Q Consensus 152 L~~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 190 (551)
|-.+. +.|.|.|++||||. +...|||.+-|.+|+++.
T Consensus 189 lF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 189 LFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 99987 46999999999984 566799999999999974
No 165
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.2e-35 Score=297.08 Aligned_cols=183 Identities=26% Similarity=0.398 Sum_probs=154.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC--CCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL--FFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~l~~~ 73 (551)
+|||||||||||++|+|+.+|. +|+|.++|.++... .+.++|++|++. +++.+||.|++.+......
T Consensus 45 ~G~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~- 118 (267)
T PRK15112 45 IGENGSGKSTLAKMLAGMIEPT-----SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT- 118 (267)
T ss_pred EcCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc-
Confidence 5999999999999999999887 89999999987531 235999999974 6788899999988654431
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.....+..+.++++++.+||. +.. +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 119 -~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 192 (267)
T PRK15112 119 -DLEPEQREKQIIETLRQVGLLPDHA-----SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred -CCCHHHHHHHHHHHHHHcCCChHHH-----hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 123344556788999999994 333 3356789999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++ |.|||+++|++. .+...||++++|++|+++..|++++
T Consensus 193 ~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 193 LELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 999864 899999999974 6778899999999999998887544
No 166
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=293.27 Aligned_cols=190 Identities=24% Similarity=0.330 Sum_probs=154.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..+|.+....+|+|.++|.++... +++++|++|++.+++ +|++||+.+......
T Consensus 36 ~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~- 113 (251)
T PRK14270 36 IGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG- 113 (251)
T ss_pred ECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC-
Confidence 59999999999999999986521001279999999987421 245999999998888 899999998754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+.+++++++++.+||.+... ...+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 114 -~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~ 191 (251)
T PRK14270 114 -IKDKKELDKIVEWALKKAALWDEVK-DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV 191 (251)
T ss_pred -CCcHHHHHHHHHHHHHHcCCchhhh-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1123445567888999998842111 11234678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 192 ~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 192 ELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9976 589999999974 6788899999999999999998765
No 167
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-35 Score=300.91 Aligned_cols=181 Identities=23% Similarity=0.331 Sum_probs=151.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc----------ccceEEEEccCCC--CCCCCCHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN----------KAYKFAYVRQEDL--FFSQLTVRETLSLAA 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~----------~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~ 68 (551)
+||||||||||+|+|+|..+|. +|+|.++|+++.. .++.++|++|++. +++ .||+||+.+..
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~ 116 (289)
T PRK13645 43 IGTTGSGKSTMIQLTNGLIISE-----TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGP 116 (289)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHH
Confidence 5999999999999999999887 8999999987631 1245999999963 444 59999998865
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
... ....++..++++++++.++|. +..+ +.++.||||||||++||++|+.+|++|+|||||+|||+.++..
T Consensus 117 ~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~-----~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 117 VNL---GENKQEAYKKVPELLKLVQLPEDYVK-----RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHc---CCCHHHHHHHHHHHHHHcCCChhHhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 422 123444556788899999994 3433 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.+.|+++++ .|+|||+++|++. ++...+|++++|++|++++.|++++
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999986 4899999999975 6778899999999999999987654
No 168
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=323.04 Aligned_cols=185 Identities=26% Similarity=0.381 Sum_probs=158.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcC--C
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ--L 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~--~ 72 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... +++++||+|++.+++.+||+||+.++.... .
T Consensus 37 iG~nGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (510)
T PRK09700 37 LGENGAGKSTLMKVLSGIHEPT-----KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV 111 (510)
T ss_pred ECCCCCCHHHHHHHHcCCcCCC-----ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence 6999999999999999999887 89999999987542 135999999999999999999998754211 0
Q ss_pred CC--CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 73 PE--ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 73 ~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.. .....+.+++++++++.+||.+..| +.+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (510)
T PRK09700 112 CGVNIIDWREMRVRAAMMLLRVGLKVDLD-----EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL 186 (510)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCcc-----cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 01 0123345567899999999975544 4567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|++++++|+|||+++|++ ..+...||++++|++|++++.|++++
T Consensus 187 ~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 187 IMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhh
Confidence 9999998899999999996 46778899999999999999999876
No 169
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=296.83 Aligned_cols=191 Identities=27% Similarity=0.361 Sum_probs=153.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+|+|+|..++......+|+|.++|+++... ++.++|++|++.+++. ||.||+.+....+..
T Consensus 51 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 129 (267)
T PRK14235 51 IGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL 129 (267)
T ss_pred ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc
Confidence 59999999999999999987410001289999999887421 2459999999988885 999999987643311
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+..++++++++.+||.+.... ..+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 130 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 207 (267)
T PRK14235 130 -ARSKAELDEIVETSLRKAGLWEEVKD-RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207 (267)
T ss_pred -ccchHHHHHHHHHHHHHcCCchhhhH-HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 11233445678899999999542111 1234578999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ +.|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 208 ~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 208 ELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9976 689999999964 6778899999999999999987654
No 170
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=292.90 Aligned_cols=177 Identities=30% Similarity=0.410 Sum_probs=150.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++... ++.++|++|++.+++ .||+||+.+....+ .
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~ 105 (241)
T PRK14250 35 VGPSGAGKSTLIKLINRLIDPT-----EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G 105 (241)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C
Confidence 5999999999999999999887 89999999886431 245999999998887 69999988754321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
...++++++++.+||. +.. ++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 106 ----~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 106 ----EKNVDVEYYLSIVGLNKEYA-----TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred ----cHHHHHHHHHHHcCCCHHHh-----hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1134678899999995 333 345778999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |+|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 177 ~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 177 LKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9864 899999999975 6778899999999999999887654
No 171
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-35 Score=292.49 Aligned_cols=189 Identities=26% Similarity=0.392 Sum_probs=152.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..++.+ ..+|+|.++|+++... ++.++|++|++.+++ .||+||+.+....+.. .
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~ 109 (246)
T PRK14269 34 IGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-I 109 (246)
T ss_pred ECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-c
Confidence 59999999999999999975210 1289999999987542 245999999998887 6999999887543211 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
....+.+++++++++.+||.+.... .-+..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 188 (246)
T PRK14269 110 KNKDEEEALVVDCLQKVGLFEEVKD-KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL 188 (246)
T ss_pred cChHHHHHHHHHHHHHcCCChhhhH-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1123344567899999999432111 123457889999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++ |+|+|+++|++. .+...+|++++|++|++++.|++++
T Consensus 189 ~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 227 (246)
T PRK14269 189 SH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKE 227 (246)
T ss_pred hC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHH
Confidence 75 899999999964 6778899999999999999987654
No 172
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-35 Score=293.32 Aligned_cols=191 Identities=24% Similarity=0.314 Sum_probs=158.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---c----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---K----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..++++.+..+|+|.++|+++.. . ++.++|++|+..+++ .|+.||+.+......
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~- 116 (261)
T PRK14258 39 IGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG- 116 (261)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC-
Confidence 5999999999999999999876555568999999988631 1 245999999988888 899999988654321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+..+++.++++.+++.+..+. ..++.+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 117 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~ 194 (261)
T PRK14258 117 -WRPKLEIDDIVESALKDADLWDEIKH-KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQ 194 (261)
T ss_pred -CCcHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11233445678889999998542221 2345678999999999999999999999999999999999999999999999
Q ss_pred HHHh-CCCEEEEEecCCchhHHhhcccEEEEcC-----CeEEEecCCCC
Q 008843 154 QLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTE-----GKLVYAGPARD 196 (551)
Q Consensus 154 ~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~-----G~iv~~G~~~~ 196 (551)
++++ +|+|||+++|++ ..+...+|++++|++ |++++.|++++
T Consensus 195 ~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 242 (261)
T PRK14258 195 SLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242 (261)
T ss_pred HHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence 9875 589999999997 478889999999999 99999998766
No 173
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-35 Score=291.68 Aligned_cols=191 Identities=24% Similarity=0.352 Sum_probs=154.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++.+....+|+|.++|+++.. .++.++|++|+..+++.+|+.||+.+.....
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~-- 113 (252)
T PRK14256 36 IGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN-- 113 (252)
T ss_pred ECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--
Confidence 5999999999999999997521000127999999988742 1345999999999999999999998765432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
......+.+++++++++.+|+.+..+.. .+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~ 192 (252)
T PRK14256 114 GRVNRSEADEIVESSLKRVALWDEVKDR-LKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192 (252)
T ss_pred CCCCHHHHHHHHHHHHHHcCCchhhhHH-hhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 1122344456788999999985321111 234678899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+...||++++|++|+++..|++++
T Consensus 193 ~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 193 ELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9976 589999999974 6778899999999999999988654
No 174
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-35 Score=296.55 Aligned_cols=181 Identities=23% Similarity=0.369 Sum_probs=154.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+|+||||||||+++|+|..+|. +|+|.++|+++... ++.+||++|++. .++..||.||+.+.....
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--- 110 (277)
T PRK13642 39 IGQNGSGKSTTARLIDGLFEEF-----EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ--- 110 (277)
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---
Confidence 5999999999999999999887 89999999987532 245999999974 677789999998765432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....++..++++++++.+||.+..+ ..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (277)
T PRK13642 111 GIPREEMIKRVDEALLAVNMLDFKT-----REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHE 185 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1234455567899999999965544 45678999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ |.|||++||++. .+. .+|++++|++|+++..|++++
T Consensus 186 l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 186 IKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHH
Confidence 9875 999999999976 454 599999999999999998765
No 175
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-35 Score=294.55 Aligned_cols=190 Identities=26% Similarity=0.340 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++.+....+|+|.++|+++... +++++|++|+..+++ .||+||+.+......
T Consensus 45 ~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~- 122 (260)
T PRK10744 45 IGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE- 122 (260)
T ss_pred ECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC-
Confidence 59999999999999999986210001279999999887421 245999999998888 799999988654321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
..+.++.+++++++++.+|+.+.... ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 123 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 200 (260)
T PRK10744 123 -KLSRAEMDERVEWALTKAALWNEVKD-KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT 200 (260)
T ss_pred -CCCHHHHHHHHHHHHHHcCCChhhHH-HHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 12344455678899999998421111 1234677899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ +.|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 201 ~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 201 ELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9964 789999999974 6778899999999999999987654
No 176
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-35 Score=293.52 Aligned_cols=191 Identities=24% Similarity=0.350 Sum_probs=154.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.+|.+....+|+|.++|+++.. .++.++|++|+..+++.+||+||+.+....+.
T Consensus 36 ~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~- 114 (258)
T PRK14241 36 IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG- 114 (258)
T ss_pred ECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC-
Confidence 5999999999999999998642100128999999988632 12459999999999999999999988764321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+.+++++++++.+||.+.... .-+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 115 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 192 (258)
T PRK14241 115 -VRNKKDLDELVEKSLRGANLWNEVKD-RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLIN 192 (258)
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 11234455678899999998421111 1234678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEc------CCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT------EGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+...+|++++|+ +|++++.|++++
T Consensus 193 ~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~ 239 (258)
T PRK14241 193 ELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 (258)
T ss_pred HHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence 9964 689999999964 6778899999996 799999987654
No 177
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-35 Score=291.57 Aligned_cols=191 Identities=24% Similarity=0.343 Sum_probs=154.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+|+|+|..+|......+|+|.++|+++.. .++.++|++|++.+++.+|+.||+.+......
T Consensus 36 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~- 114 (252)
T PRK14272 36 IGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG- 114 (252)
T ss_pred ECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC-
Confidence 5999999999999999998764211137999999988742 12459999999999999999999987654321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++..+.+++.++.+++.+.... ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 115 -~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 192 (252)
T PRK14272 115 -IRDRDHLMEVAERSLRGAALWDEVKD-RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMT 192 (252)
T ss_pred -CCCHHHHHHHHHHHHHHcCcchhhhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11233445667778888876421111 1245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|+|+++|++. .+...+|++++|++|++++.|++++
T Consensus 193 ~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 193 DLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9975 799999999975 6777899999999999999988655
No 178
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7.4e-35 Score=291.29 Aligned_cols=180 Identities=31% Similarity=0.412 Sum_probs=152.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+ . +|+|.++|+++... .+.++|++|++.+++.+|+.||+.+.....
T Consensus 28 ~G~nGsGKSTLl~~l~Gl~~-~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---- 97 (248)
T PRK03695 28 VGPNGAGKSTLLARMAGLLP-G-----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDK---- 97 (248)
T ss_pred ECCCCCCHHHHHHHHcCCCC-C-----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccC----
Confidence 59999999999999999874 3 69999999987532 234899999988888899999998763211
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhh-------CCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA-------SPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~-------~p~illLDEPtsGLD~~~~~~i 148 (551)
....+..++++++++.+||.+..+ ..++.||||||||++||++|+. +|++++|||||+|||+.++..+
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l 172 (248)
T PRK03695 98 TRTEAVASALNEVAEALGLDDKLG-----RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAAL 172 (248)
T ss_pred CCcHHHHHHHHHHHHHcCCHhHhc-----CCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHH
Confidence 122334567889999999965444 4567899999999999999998 6799999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++++++|.|||+++|++. ++...+|++++|++|++++.|+.++
T Consensus 173 ~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 219 (248)
T PRK03695 173 DRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDE 219 (248)
T ss_pred HHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999878999999999964 6788899999999999999887654
No 179
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.3e-35 Score=283.32 Aligned_cols=168 Identities=35% Similarity=0.505 Sum_probs=143.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++.. .+++++|++|++.+++.+|++||+.+.....
T Consensus 30 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLLEKFD-----SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 5999999999999999999887 8999999998531 1245999999999999999999999865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
.....+..++++++++.+||.+..| +.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 105 ---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 176 (206)
T TIGR03608 105 ---KLSKKEKREKKKEALEKVGLNLKLK-----QKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDL 176 (206)
T ss_pred ---CCCHHHHHHHHHHHHHHcCchhhhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHH
Confidence 1233455667889999999965544 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCchhHHhhcccEEEE
Q 008843 152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 152 L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
|++++++|.|+|+++|++. .+ ..+|++++|
T Consensus 177 l~~~~~~~~tii~~sh~~~-~~-~~~d~i~~l 206 (206)
T TIGR03608 177 LLELNDEGKTIIIVTHDPE-VA-KQADRVIEL 206 (206)
T ss_pred HHHHHhcCCEEEEEeCCHH-HH-hhcCEEEeC
Confidence 9999877999999999975 34 579999875
No 180
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-35 Score=291.54 Aligned_cols=188 Identities=26% Similarity=0.329 Sum_probs=151.8
Q ss_pred CCCCCCcHHHHHHHHHcCcC--CCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM--ASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~--~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|..+ |+ ...+|+|.++|+++.. .++.++||+|+..+++ .||+||+.+....+
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~p~--~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~ 113 (252)
T PRK14239 37 IGPSGSGKSTLLRSINRMNDLNPE--VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK 113 (252)
T ss_pred ECCCCCCHHHHHHHHhcccccCCC--CCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc
Confidence 59999999999999999853 31 0127999999998632 1245999999998887 79999998875432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
. .......++.++++++.+++.+...+ ..++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 114 ~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 190 (252)
T PRK14239 114 G--IKDKQVLDEAVEKSLKGASIWDEVKD-RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET 190 (252)
T ss_pred C--CCcHHHHHHHHHHHHHHcCCchhHHH-HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence 1 11223345667889999987432111 12456789999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|+++++ ++|||+++|++. ++...+|++++|++|++++.|++++
T Consensus 191 l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 191 LLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999975 689999999974 6778899999999999999988655
No 181
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-35 Score=292.17 Aligned_cols=190 Identities=26% Similarity=0.396 Sum_probs=154.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++.+....+|+|.++|.++.. .++.++|++|++.+++ .||+||+.+......
T Consensus 35 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~- 112 (250)
T PRK14262 35 IGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG- 112 (250)
T ss_pred ECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-
Confidence 5999999999999999998741100128999999988642 1245999999998888 899999998754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+.++.+++.++.+|+.+..+ ...+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 113 -~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 190 (250)
T PRK14262 113 -VKSKHKLDRIVEESLKKAALWDEVK-SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLE 190 (250)
T ss_pred -CCcHHHHHHHHHHHHHHcCCCchhH-HHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence 1123344566788999999853221 12355678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|+|+++|++. .+...+|++++|++|+++..|++++
T Consensus 191 ~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 191 ELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 9975 789999999975 5778899999999999999988655
No 182
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=293.42 Aligned_cols=190 Identities=24% Similarity=0.307 Sum_probs=155.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+|||||||||||++|+|+.+|......+|+|.++|+++... ++.++|++|++.+++ .||+||+.+.....
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-- 128 (267)
T PRK14237 52 IGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-- 128 (267)
T ss_pred ECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--
Confidence 59999999999999999986410001289999999987421 345999999998887 59999998865432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....+.+.++++.++++.++|.+..++ ..++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~l~~~i~~-~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 207 (267)
T PRK14237 129 GVKDKKVLDEIVETSLKQAALWDQVKD-DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF 207 (267)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCchhhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 112344455678899999998543222 2245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ +.|||+++|++. .+...||++++|++|++++.|++++
T Consensus 208 ~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 208 ELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9964 789999999975 6778899999999999999998765
No 183
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-35 Score=293.22 Aligned_cols=190 Identities=24% Similarity=0.356 Sum_probs=153.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..++.+....+|+|.++|+++.. .++.++|++|+..+++. ||+||+.+....+.
T Consensus 44 ~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~- 121 (259)
T PRK14274 44 IGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG- 121 (259)
T ss_pred ECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC-
Confidence 5999999999999999998631111127999999998742 12459999999988886 99999988654321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++..++++++++.+|+.+.... ..+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 122 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 199 (259)
T PRK14274 122 -TKNKKKLQEIVEKSLKDVALWDEVKD-RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199 (259)
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhhhh-hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 11234455678889999998532111 1245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|+|+++|++. .+...+|++++|++|+++..|++++
T Consensus 200 ~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 200 KLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9975 789999999974 6778899999999999999998665
No 184
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-35 Score=318.66 Aligned_cols=185 Identities=22% Similarity=0.317 Sum_probs=157.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... +++++|++|+..+++.+||+||+.+........
T Consensus 30 iG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (491)
T PRK10982 30 MGENGAGKSTLLKCLFGIYQKD-----SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM 104 (491)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence 6999999999999999999887 89999999987532 245999999998999999999998754211110
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.....+..++++++++.+|+.+..+ +.+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 105 FVDQDKMYRDTKAIFDELDIDIDPR-----AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179 (491)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcc-----CchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 1123444567889999999965444 45678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++|+|||+++|++. ++...||++++|++|+++..|++++
T Consensus 180 l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 180 LKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhh
Confidence 9888999999999974 6778899999999999999998876
No 185
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.2e-35 Score=313.02 Aligned_cols=184 Identities=29% Similarity=0.432 Sum_probs=160.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeC--Cc-----ccceEEEEccCC--CCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS--SN-----KAYKFAYVRQED--LFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~--~~-----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l~ 71 (551)
+|+||||||||.|+|+|+.+|+ +|+|.++|.+. +. .++++-+|+||+ .+.|.+||++++......+
T Consensus 323 VGeSGsGKSTlar~i~gL~~P~-----~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 323 VGESGSGKSTLARILAGLLPPS-----SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 6999999999999999999997 89999999872 11 123567777775 7999999999999887655
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
... ...++++++.++++.+||. ..+.++++++||||||||++|||||+.+|+++++|||||.||+..+.+++++
T Consensus 398 ~~~--~~~~~~~rv~~ll~~VgL~----~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL 471 (539)
T COG1123 398 GGG--SGAERRARVAELLELVGLP----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL 471 (539)
T ss_pred ccc--chHHHHHHHHHHHHHcCCC----HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH
Confidence 432 2566777899999999996 3366789999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|+++.+ .|.|.++++||. ..+.+.||||.+|++|++|+.||.++
T Consensus 472 l~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 472 LKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHH
Confidence 999985 499999999996 58899999999999999999997665
No 186
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=290.41 Aligned_cols=190 Identities=25% Similarity=0.363 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..++.+....+|+|.++|+++.. .+++++|++|++.+++ +|+.||+.+....+.
T Consensus 35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~- 112 (250)
T PRK14240 35 IGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG- 112 (250)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC-
Confidence 5999999999999999987531111127999999998753 1245999999998888 899999998754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++.+++++++++.+++.+.... .-+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 113 -~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 190 (250)
T PRK14240 113 -IKDKKKLDEIVEKSLKGAALWDEVKD-RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQ 190 (250)
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhhHH-HHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11234455678888999987431111 1244678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 191 ~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 191 ELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9964 789999999964 6778899999999999999887654
No 187
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-34 Score=318.08 Aligned_cols=188 Identities=23% Similarity=0.343 Sum_probs=157.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+|+|+|..+|+. .+|+|.++|+++... ++.++||+|++.+++.+||.||+.+........
T Consensus 33 iG~nGsGKSTLl~~i~G~~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 109 (500)
T TIGR02633 33 CGENGAGKSTLMKILSGVYPHGT---WDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG 109 (500)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccc
Confidence 69999999999999999987620 179999999987542 235999999999999999999998865432111
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 75 -~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++..++++++++.+||.+..+ ++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (500)
T TIGR02633 110 GRMAYNAMYLRAKNLLRELQLDADNV----TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR 185 (500)
T ss_pred cccCHHHHHHHHHHHHHHcCCCCCcc----cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 1223444567889999999965332 23467899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|.|||+++|++. .+...||++++|++|+++..|++++
T Consensus 186 ~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 186 DLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 99988999999999964 6778899999999999999998765
No 188
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=290.19 Aligned_cols=190 Identities=24% Similarity=0.293 Sum_probs=153.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.+|..+...+|+|.++|.++.. .++.++|++|++.+++. |++||+.+....+.
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~- 113 (251)
T PRK14249 36 IGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG- 113 (251)
T ss_pred ECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC-
Confidence 5999999999999999998875211236999999988642 13459999999998885 99999998764321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++.++.+++.++.+++.+.... ..++.+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 114 -~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 191 (251)
T PRK14249 114 -TTAQSRLDEVVEKSLRQAALWDEVKD-NLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191 (251)
T ss_pred -CChhhHHHHHHHHHHHHhCCchhhhh-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11123344567788888887532211 2345678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++ +++|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 192 ~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 192 ELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 995 5899999999964 6778899999999999999988654
No 189
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.1e-34 Score=284.68 Aligned_cols=174 Identities=36% Similarity=0.530 Sum_probs=149.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|++.+++.+|+.||+.+......
T Consensus 37 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~ 111 (220)
T TIGR02982 37 TGPSGSGKTTLLTLIGGLRSVQ-----EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP 111 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence 5999999999999999999887 89999999987431 2459999999999999999999998765321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
....++.+++++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 112 --~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l 184 (220)
T TIGR02982 112 --NLSYQEARERARAMLEAVGLGDHLD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184 (220)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 1234555667899999999965444 356789999999999999999999999999999999999999999999
Q ss_pred HHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 153 ~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
+++++ .|+|||+++|++. ....+|++++|++|++
T Consensus 185 ~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 185 QKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99986 5899999999974 4578999999999986
No 190
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-34 Score=281.01 Aligned_cols=156 Identities=39% Similarity=0.612 Sum_probs=135.3
Q ss_pred CCCCCCcHHHHHHHHHcCcC---CCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM---ASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~---~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.+ ++ +|+|.++|.++... .+.++|++|++.+++.+||+||+.+.....
T Consensus 39 ~G~nGsGKSTLl~~l~G~~~~~~~~-----~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-- 111 (202)
T cd03233 39 LGRPGSGCSTLLKALANRTEGNVSV-----EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-- 111 (202)
T ss_pred ECCCCCCHHHHHHHhcccCCCCCCc-----ceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--
Confidence 59999999999999999988 54 89999999987532 345999999999999999999998764210
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 112 -----------------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 162 (202)
T cd03233 112 -----------------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR 162 (202)
T ss_pred -----------------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 133567899999999999999999999999999999999999999999999
Q ss_pred HHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 154 QLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 154 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+++++ +.|+|+++|+...++...+|++++|++|++++.|
T Consensus 163 ~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 163 TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99865 6788887777656788899999999999998754
No 191
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.5e-34 Score=290.63 Aligned_cols=183 Identities=23% Similarity=0.358 Sum_probs=152.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEe-----CCcc---------cceEEEEccCC--CCCCCCCHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNK---------AYKFAYVRQED--LFFSQLTVRETL 64 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~-----~~~~---------~~~i~yv~Q~~--~l~~~lTV~e~l 64 (551)
+||||||||||+|+|+|..+|+ +|+|.++|++ +... ++.++|++|+. .+++.+|+.||+
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 112 (258)
T PRK11701 38 VGESGSGKTTLLNALSARLAPD-----AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI 112 (258)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence 5999999999999999999887 8999999987 5431 23499999997 467788999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHH
Q 008843 65 SLAAELQLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF 143 (551)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~ 143 (551)
.+...... .....+.++++.++++.+|+.+ .. ++.++.||||||||++|||+|+.+|++|+|||||+|||+.
T Consensus 113 ~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~ 185 (258)
T PRK11701 113 GERLMAVG--ARHYGDIRATAGDWLERVEIDAARI-----DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185 (258)
T ss_pred HHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHH-----hCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 76432211 1122344567889999999953 33 3456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 144 QAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 144 ~~~~i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++..+.+.|++++++ |.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 186 ~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 186 VQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999865 899999999964 6777899999999999999998765
No 192
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=292.60 Aligned_cols=185 Identities=24% Similarity=0.306 Sum_probs=150.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC-----CCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLM-----ASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAA 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~-----~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~ 68 (551)
+||||||||||+|+|+|+.+ |+ +|+|.++|+++.. .+++++|++|++.+++. |+.||+.+..
T Consensus 53 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~ 126 (268)
T PRK14248 53 IGPSGCGKSTFLRSINRMNDLIPSARS-----EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHAL 126 (268)
T ss_pred ECCCCCCHHHHHHHHHhcccccCCCCC-----ceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHH
Confidence 59999999999999999864 34 7999999998742 12459999999988885 9999998865
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.... .......++.+.+.++.+++.+... ...++.++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 127 ~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 203 (268)
T PRK14248 127 KYAG--ERRKSVLDEIVEESLTKAALWDEVK-DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI 203 (268)
T ss_pred HhcC--CCcHHHHHHHHHHHHHHcCCCcchH-HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHH
Confidence 4321 1122233456778889998852111 122456789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++++ +.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 204 ~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 204 EELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999975 689999999964 6778899999999999999987654
No 193
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-34 Score=318.31 Aligned_cols=178 Identities=24% Similarity=0.433 Sum_probs=155.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++.+|||+|++.+++.+||+||+.+....
T Consensus 43 iG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~---- 113 (510)
T PRK15439 43 LGGNGAGKSTLMKIIAGIVPPD-----SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK---- 113 (510)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc----
Confidence 6999999999999999999887 89999999987532 13499999999999999999999875321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
..+.+++++++++.+||.+..+ +.+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 114 ---~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 114 ---RQASMQKMKQLLAALGCQLDLD-----SSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred ---chHHHHHHHHHHHHcCCCcccc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 1234567889999999975544 45678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus 186 ~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 186 LLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence 9888999999999964 6778899999999999999998766
No 194
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=293.57 Aligned_cols=189 Identities=29% Similarity=0.412 Sum_probs=153.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC---CCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMAS---PRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~---~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|..+|+ .....+|+|.++|.++... ++.++|++|++.++..+||+||+.+......
T Consensus 33 ~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~ 112 (272)
T PRK13547 33 LGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHA 112 (272)
T ss_pred ECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccc
Confidence 5999999999999999998764 1112379999999987532 2348999999876666899999987542111
Q ss_pred C--CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHh---------hCCceEEEeCCCCCCC
Q 008843 73 P--EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI---------ASPSVIYADEPTTGLD 141 (551)
Q Consensus 73 ~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~---------~~p~illLDEPtsGLD 141 (551)
. .... .+..++++++++.+||.+..+ +.++.|||||||||+||++|+ .+|++|+|||||+|||
T Consensus 113 ~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD 186 (272)
T PRK13547 113 RRAGALT-HRDGEIAWQALALAGATALVG-----RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186 (272)
T ss_pred cccccCC-HHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCC
Confidence 0 1111 234456889999999965443 456789999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 142 AFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 142 ~~~~~~i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.++..+.+.|++++++ |.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 187 ~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (272)
T PRK13547 187 LAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPAD 241 (272)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999876 899999999975 6777899999999999999988655
No 195
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=309.43 Aligned_cols=190 Identities=28% Similarity=0.384 Sum_probs=166.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+|.|||||||+.++|.|++++.. ...+|+|.++|+++... .++|+||+|++ .+-|.+|+.+.+.-...
T Consensus 41 vGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~ 119 (539)
T COG1123 41 VGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALR 119 (539)
T ss_pred EcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHH
Confidence 69999999999999999998763 35689999999865321 24599999996 57777999999988777
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.+.. .+.++.++++.++|+.+||.+-... +.++++|||||||||.||+||+.+|++|++||||++||+.++.+|+
T Consensus 120 ~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL 194 (539)
T COG1123 120 LHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQIL 194 (539)
T ss_pred Hhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHH
Confidence 6643 2377888999999999999875543 6799999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 150 EALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 150 ~~L~~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
++|+++. +.|.++|++|||+ ..+.+++|||++|++|++++.|+++++
T Consensus 195 ~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i 242 (539)
T COG1123 195 DLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEI 242 (539)
T ss_pred HHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHH
Confidence 9999998 5699999999997 478899999999999999999998773
No 196
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=323.97 Aligned_cols=184 Identities=24% Similarity=0.326 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l 70 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... +++++||+|++ .+++.+||.|++.+....
T Consensus 356 vG~nGsGKSTLlk~i~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~ 430 (623)
T PRK10261 356 VGESGSGKSTTGRALLRLVESQ-----GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 (623)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-----CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999887 89999999876431 23599999996 589999999999886543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
+. .....+.+++++++++.+||.. ...++++++|||||||||+||++|+.+|++|||||||+|||+.++.++++
T Consensus 431 ~~--~~~~~~~~~~~~~~L~~~gL~~----~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ 504 (623)
T PRK10261 431 HG--LLPGKAAAARVAWLLERVGLLP----EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504 (623)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCCH----HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 21 1123445677899999999952 12345678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+|++++++ |.|||++|||+. .+...||++++|++|++++.|++++
T Consensus 505 ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 505 LLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999865 899999999964 6788899999999999999998765
No 197
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-35 Score=274.41 Aligned_cols=185 Identities=31% Similarity=0.453 Sum_probs=158.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||||.|+|...|+ +|++.+||.+.+.. .++.+.+||+..+-...||+|.+.++..-....
T Consensus 33 lGPNGAGKSTlLk~LsGel~p~-----~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g- 106 (259)
T COG4559 33 LGPNGAGKSTLLKALSGELSPD-----SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSG- 106 (259)
T ss_pred ECCCCccHHHHHHHhhCccCCC-----CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccC-
Confidence 6999999999999999999987 89999999998764 256799999988766679999999986532211
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhh------CCceEEEeCCCCCCCHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA------SPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~------~p~illLDEPtsGLD~~~~~~i~ 149 (551)
....+..+.+++.|+..++.+.+.. ....|||||||||.+||.|++ ++++||||||||.||...+..++
T Consensus 107 ~~~~e~~~i~~~ala~~d~~~la~R-----~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl 181 (259)
T COG4559 107 REPEEDERIAAQALAATDLSGLAGR-----DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL 181 (259)
T ss_pred CCchhhHHHHHHHHHHcChhhhhcc-----chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH
Confidence 1223455668899999999776654 456899999999999999986 44699999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
++.++++++|..|+++.||.+ ....++|||++|++||++..|+++++
T Consensus 182 ~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 182 RLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHHHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHHh
Confidence 999999999999999999986 45667999999999999999999884
No 198
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=292.96 Aligned_cols=188 Identities=24% Similarity=0.336 Sum_probs=150.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++......+|+|.++|+++.. .+++++|++|++.+++. ||+||+.+.+..+.
T Consensus 45 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~- 122 (269)
T PRK14259 45 IGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING- 122 (269)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC-
Confidence 5999999999999999997631000128999999988642 12459999999988885 99999998765321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.. .+.+++++++++.+++....+. ..+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 123 --~~-~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 198 (269)
T PRK14259 123 --YT-GDMDELVERSLRKAAVWDECKD-KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMH 198 (269)
T ss_pred --Cc-HHHHHHHHHHHHHhCCcchhhh-hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 11 2234567788898887421111 2345678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcC-----------CeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE-----------GKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-----------G~iv~~G~~~~ 196 (551)
++++ +.|||+++|++. .+...||++++|++ |++++.|++++
T Consensus 199 ~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 199 ELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred HHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence 9965 789999999974 77889999999996 67899988765
No 199
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=288.33 Aligned_cols=190 Identities=26% Similarity=0.348 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..++......+|+|.++|.++.. .++.++|++|++.+++ .||.||+.+..... .
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~ 111 (249)
T PRK14253 35 IGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--G 111 (249)
T ss_pred ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--C
Confidence 5999999999999999998753111137999999988642 1245999999999887 79999998865432 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.......++++.+.++.+|+.+.... ..+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 190 (249)
T PRK14253 112 IKDKKVLDEVVERSLRGAALWDEVKD-RLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190 (249)
T ss_pred CCchHHHHHHHHHHHHHcCCchhhhH-HhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 11233445667888888888532211 12446789999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++ ++|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 191 ~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 191 LKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred Hhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 976 589999999974 7788899999999999999887654
No 200
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=288.20 Aligned_cols=190 Identities=25% Similarity=0.375 Sum_probs=151.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..++.+....+|+|.++|+++.. .++.++|++|++.+++ .||+||+.+......
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~- 113 (251)
T PRK14251 36 IGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG- 113 (251)
T ss_pred ECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC-
Confidence 5999999999999999998621000127999999998642 1245999999998886 799999987654321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....+..++.++++++.+++..... ...+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 114 -~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 191 (251)
T PRK14251 114 -VKDKELIDQRVEESLKQAAIWKETK-DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM 191 (251)
T ss_pred -CCCHHHHHHHHHHHHHHcCCCcchH-HHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHH
Confidence 1122334456788999999843110 11244678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ +.|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 192 ~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 192 ELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9864 689999999975 6777899999999999999887654
No 201
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=316.17 Aligned_cols=183 Identities=26% Similarity=0.372 Sum_probs=155.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++.++||+|++.+++.+||.||+.+........
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 110 (501)
T PRK11288 36 MGENGAGKSTLLKILSGNYQPD-----AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG 110 (501)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence 6999999999999999999887 89999999987432 245999999999999999999999864211111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.....+.+++++++++.+||.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 111 IVNRRLLNYEAREQLEHLGVDIDPD-----TPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCcC-----CchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 1223445567889999999965443 45678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA 194 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 194 (551)
++++|+|||+++|++. .+...||++++|++|+++..++.
T Consensus 186 ~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 186 LRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 9888999999999974 67788999999999999877654
No 202
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-34 Score=291.29 Aligned_cols=190 Identities=28% Similarity=0.368 Sum_probs=154.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|+.+|..+...+|+|.++|.++... +..++|++|+..+++ .||+||+.+......
T Consensus 53 ~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~-- 129 (276)
T PRK14271 53 MGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK-- 129 (276)
T ss_pred ECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--
Confidence 59999999999999999987521112389999999886431 345999999998888 799999988653221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
..+..+..+++.++++.+|+.+..++. -+..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 130 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 208 (276)
T PRK14271 130 LVPRKEFRGVAQARLTEVGLWDAVKDR-LSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208 (276)
T ss_pred CCCHHHHHHHHHHHHHHcCCCchhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 123444555678889999996433222 2346789999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++ +.|||+++|++. ++...+|++++|++|+++..|++++
T Consensus 209 ~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 209 LAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred Hhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 976 589999999964 6788899999999999999988655
No 203
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.5e-34 Score=289.58 Aligned_cols=184 Identities=28% Similarity=0.380 Sum_probs=154.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l 70 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... ++.++|++|+. .+++..|+.|++.+....
T Consensus 44 ~G~nGsGKSTLl~~l~Gl~~p~-----sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~ 118 (268)
T PRK10419 44 LGRSGCGKSTLARLLVGLESPS-----QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH 118 (268)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence 5999999999999999998887 89999999976431 24599999997 467789999998765431
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.. .....+..++++++++.+|+.+ ...+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 119 ~~--~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~ 192 (268)
T PRK10419 119 LL--SLDKAERLARASEMLRAVDLDD----SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR 192 (268)
T ss_pred hc--cCCHHHHHHHHHHHHHHcCCCh----hHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 11 1234445567899999999952 12344677899999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|++++++ |.|+|+++|++. .+...+|++++|++|++++.|++++
T Consensus 193 ~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 193 LLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhh
Confidence 99999865 899999999964 6777899999999999999998776
No 204
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=291.74 Aligned_cols=190 Identities=26% Similarity=0.322 Sum_probs=153.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++......+|+|.++|.++.. .++.++|++|+..+++. |+.||+.+......
T Consensus 57 ~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~- 134 (272)
T PRK14236 57 IGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG- 134 (272)
T ss_pred ECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-
Confidence 5999999999999999998741000128999999998742 12459999999988886 99999988754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
...+++.++.++++++.+++.+...+ ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 135 -~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~ 212 (272)
T PRK14236 135 -INNRRVLDEAVERSLRGAALWDEVKD-RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT 212 (272)
T ss_pred -CCcHHHHHHHHHHHHHHcCCChhHHH-HhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11223344668889999998532111 1245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ +.|||+++|++. ++...+|++++|++|+++..|++++
T Consensus 213 ~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 213 ELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHH
Confidence 9976 789999999964 6778899999999999999887654
No 205
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.8e-35 Score=291.20 Aligned_cols=177 Identities=28% Similarity=0.473 Sum_probs=141.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|+.+|. +|+|.++|.++... ++.++|++|++.+++ .||.||+.+... .
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~ 102 (237)
T cd03252 34 VGRSGSGKSTLTKLIQRFYVPE-----NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----G 102 (237)
T ss_pred ECCCCCCHHHHHHHHhcCcCCC-----CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----C
Confidence 5999999999999999999887 89999999876432 245999999988775 699999987431 1
Q ss_pred CCHHHHHH-----HHHHHHHHc--CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDE-----YVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
....+..+ ...+.++.+ ++.+.. +..+++|||||||||+||++|+.+|++++|||||+|||+.++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l 177 (237)
T cd03252 103 MSMERVIEAAKLAGAHDFISELPEGYDTIV-----GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177 (237)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchh-----hcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH
Confidence 11111111 123344444 332222 346789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++++ |+|||+++|++. .+. .+|++++|++|++++.|++++
T Consensus 178 ~~~l~~~~~-~~tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~~~~~~ 222 (237)
T cd03252 178 MRNMHDICA-GRTVIIIAHRLS-TVK-NADRIIVMEKGRIVEQGSHDE 222 (237)
T ss_pred HHHHHHhcC-CCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEEcCHHH
Confidence 999999974 899999999986 454 599999999999999988654
No 206
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.4e-34 Score=288.52 Aligned_cols=187 Identities=26% Similarity=0.317 Sum_probs=151.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCC--CCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDL--FFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|+.+|.. ...+|+|.++|++++.. .+.++||+|++. +.+.+|+.+++.+.+....
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~~~~-~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~--- 110 (254)
T PRK10418 35 VGGSGSGKSLTCAAALGILPAGV-RQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG--- 110 (254)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCC-CCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---
Confidence 59999999999999999998720 00289999999987532 245999999974 4566899999876543221
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
... .++++.++++.+||.+.. ...+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 111 ~~~--~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 186 (254)
T PRK10418 111 KPA--DDATLTAALEAVGLENAA--RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186 (254)
T ss_pred CCh--HHHHHHHHHHHcCCCChh--hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 111 235688999999996421 0224467789999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 156 a~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++ |.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 187 ~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 187 VQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 864 899999999974 5777899999999999999887654
No 207
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.5e-34 Score=276.98 Aligned_cols=150 Identities=51% Similarity=0.881 Sum_probs=134.4
Q ss_pred CCCCCCcHHHHHHHHHcCc--CCCCCcceeeEEEECCEeCCc--ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSN--KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~--~~~~~~~~~G~i~i~g~~~~~--~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|.. +|. +|+|.++|+++.. .++.++|++|++.+++.+|++||+.+.....
T Consensus 41 ~G~nGsGKStLl~~i~Gl~~~~~~-----~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~----- 110 (194)
T cd03213 41 MGPSGAGKSTLLNALAGRRTGLGV-----SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110 (194)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCC-----ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-----
Confidence 5999999999999999998 776 8999999998764 2356999999999999999999997643210
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 111 --------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 158 (194)
T cd03213 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA 158 (194)
T ss_pred --------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
++|+|+|+++|++..++...+|++++|++|++++.|
T Consensus 159 ~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 159 DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred hCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 779999999999865677889999999999998754
No 208
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=261.08 Aligned_cols=183 Identities=30% Similarity=0.405 Sum_probs=158.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----------cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDLFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||+|.|.=+..|. +|+..+.|...+-. ++.+|+|+|+-.++|.+||.|||.-+-.
T Consensus 34 lgpsgagkssllr~lnlle~p~-----sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~ 108 (242)
T COG4161 34 LGPSGAGKSSLLRVLNLLEMPR-----SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC 108 (242)
T ss_pred ECCCCCchHHHHHHHHHHhCCC-----CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH
Confidence 5999999999999999888776 89999887654211 2459999999999999999999976532
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
+. ..+++++.+.++.++|+.+.|.+.+|. .+-.|||||+|||+|||||+.+|++|++||||+.|||.-..+++
T Consensus 109 -kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv 181 (242)
T COG4161 109 -RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV 181 (242)
T ss_pred -HH-hCCCHHHHHHHHHHHHHHhcccccccc-----CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHH
Confidence 21 135678888899999999999777664 56689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++|+++..|.|-+++||.. ......+.+|+.|++|++|+.|+.+-
T Consensus 182 ~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 182 SIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999995 46677889999999999999998653
No 209
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=307.69 Aligned_cols=177 Identities=36% Similarity=0.530 Sum_probs=151.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+++|+|+.+|+ +|+|.+||.+..+. +++++||+|++.+|+. |++||+.++.. .
T Consensus 353 vG~SGaGKSTLl~lL~G~~~~~-----~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~ 421 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLAPT-----QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----D 421 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCCCC-----CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----c
Confidence 6999999999999999999987 89999999987654 3569999999999997 99999998642 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc------ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVS------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~------~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.++ +.+.++++..||.+ -.|+.+|+ ..++|||||+|||++||||+.+++++++||||++||.++...|.
T Consensus 422 ~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~ 496 (559)
T COG4988 422 ASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL 496 (559)
T ss_pred CCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHH
Confidence 233 33555666666643 34666765 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|.+++++ +|++++||++. ....+|+|++|++|+++..|..++
T Consensus 497 ~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~ 540 (559)
T COG4988 497 QALQELAKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEE 540 (559)
T ss_pred HHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHH
Confidence 999999874 99999999974 344579999999999999998876
No 210
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=288.93 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=153.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+|+||||||||+|+|+|..++++....+|+|.++|+++.. .+..++|++|++.+++ .||+||+.+....+.
T Consensus 39 ~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~- 116 (259)
T PRK14260 39 IGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA- 116 (259)
T ss_pred ECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc-
Confidence 5999999999999999998753100127999999988642 1235999999999888 899999988754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
...+.+.+++++++++.+|+.+... ...+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 117 -~~~~~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 194 (259)
T PRK14260 117 -KLPQADLDEIVESALKGAALWQEVK-DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIH 194 (259)
T ss_pred -CCCHHHHHHHHHHHHHHcCCcchhh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 1223344567888999999842111 12345678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEc-----CCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT-----EGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~-----~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+...+|++++|+ +|++++.|++++
T Consensus 195 ~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 240 (259)
T PRK14260 195 SLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQ 240 (259)
T ss_pred HHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHH
Confidence 9975 689999999975 7788899999997 599999998765
No 211
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=286.67 Aligned_cols=190 Identities=25% Similarity=0.308 Sum_probs=152.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+|+|+|..++.+....+|+|.++|+++... ++.++|++|++.+++. ||+||+.+....+.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~- 115 (253)
T PRK14261 38 IGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG- 115 (253)
T ss_pred ECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC-
Confidence 59999999999999999875321101279999999986431 2459999999988885 99999998765431
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+.++.+.++++.+++.+...+ ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 116 -~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~ 193 (253)
T PRK14261 116 -EKNKKTLDTIVEKSLKGAALWDEVKD-RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIE 193 (253)
T ss_pred -CCCHHHHHHHHHHHHHHhcCchhhHH-HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11223445667888999988432111 1245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 194 ~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 194 DLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9976 589999999964 6777899999999999999888654
No 212
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.5e-35 Score=328.43 Aligned_cols=179 Identities=32% Similarity=0.490 Sum_probs=151.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+|+|+|+++|. +|+|.+||.+++.. ++.+|||+||+.+|.. |++||+.++.. .
T Consensus 505 vG~SGsGKSTL~KLL~gly~p~-----~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p-----~ 573 (709)
T COG2274 505 VGRSGSGKSTLLKLLLGLYKPQ-----QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNP-----E 573 (709)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCC-----C
Confidence 5999999999999999999998 89999999998653 3569999999999997 99999998642 2
Q ss_pred CCHHHHHHH-----HHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDEY-----VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.+.++..+. +.+.+..+ ....||.+|+ ...+||||||||++|||+|+++|+||+||||||+||+.+...|.+
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~l--P~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~ 650 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENL--PMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhc--cccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH
Confidence 233333222 23334433 3456788875 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|+++.+ |+|+|+++|+++ ....+|||++|++|+++.+|+.++
T Consensus 651 ~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 651 NLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHH
Confidence 9999874 799999999974 566799999999999999999776
No 213
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-34 Score=315.60 Aligned_cols=185 Identities=25% Similarity=0.434 Sum_probs=154.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccC---CCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQE---DLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~---~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++++|||+|+ ..+++.+||.||+.+....+
T Consensus 295 ~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (510)
T PRK09700 295 AGLVGSGRTELMNCLFGVDKRA-----GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK 369 (510)
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-----CCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence 6999999999999999999887 89999999886431 2359999998 46889999999998754321
Q ss_pred ---CC---CCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHH
Q 008843 72 ---LP---EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQ 144 (551)
Q Consensus 72 ---~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~ 144 (551)
.. ......+.++.++++++.+||. +..+ ++++.|||||||||+||++|+.+|++|+|||||+|||+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 444 (510)
T PRK09700 370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVN-----QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444 (510)
T ss_pred cccccccccccChHHHHHHHHHHHHhcCCCCCCcc-----CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH
Confidence 00 0011223345678999999995 4444 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 145 AEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 145 ~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+..+++.|++++++|.|||++|||+. .+...||++++|++|+++..++..+
T Consensus 445 ~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 445 KAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecCcc
Confidence 99999999999888999999999974 6788899999999999998887633
No 214
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-34 Score=276.48 Aligned_cols=150 Identities=45% Similarity=0.783 Sum_probs=132.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC--CCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM--ASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~--~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|..+ ++ +|+|.++|+++... ++.++|++|++.+++.+||+||+.+....+
T Consensus 39 ~G~nGsGKSTLl~~l~G~~~~~~~-----~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------ 107 (192)
T cd03232 39 MGESGAGKTTLLDVLAGRKTAGVI-----TGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------ 107 (192)
T ss_pred ECCCCCCHHHHHHHHhCCCcCCCc-----ceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh------
Confidence 59999999999999999864 44 89999999987422 346999999999999999999998753110
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+||||||||++||++|+.+|+++++||||+|||+.++..+.+.|+++++
T Consensus 108 -------------------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~ 156 (192)
T cd03232 108 -------------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156 (192)
T ss_pred -------------------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEcC-CeEEEec
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLTE-GKLVYAG 192 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G 192 (551)
+|+|+|+++|++..++...+|++++|++ |++++.|
T Consensus 157 ~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 157 SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 7999999999986456778999999998 9999865
No 215
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-35 Score=288.40 Aligned_cols=177 Identities=28% Similarity=0.460 Sum_probs=143.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++... ++.++|++|+..+++ .||+||+.+....
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----- 102 (234)
T cd03251 34 VGPSGSGKSTLVNLIPRFYDVD-----SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG----- 102 (234)
T ss_pred ECCCCCCHHHHHHHHhccccCC-----CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----
Confidence 5999999999999999999887 89999999876432 245999999998887 6999999875321
Q ss_pred CCHHHHHH-----HHHHHHHHc--CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDE-----YVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
....+..+ .+++.++.+ ++.+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l 177 (234)
T cd03251 103 ATREEVEEAARAANAHEFIMELPEGYDTVI-----GERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177 (234)
T ss_pred CCHHHHHHHHHHcCcHHHHHhcccCcceee-----ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 11111111 234555555 554332 345778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++++ |+|||+++|++. .+.. ||++++|++|+++..|++++
T Consensus 178 ~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~ 222 (234)
T cd03251 178 QAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEE 222 (234)
T ss_pred HHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHH
Confidence 999999974 899999999985 5555 99999999999998887654
No 216
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-34 Score=296.13 Aligned_cols=190 Identities=23% Similarity=0.313 Sum_probs=154.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..++..+...+|+|.++|+++.. .+++++||+|++.+++ .|++||+.|+....
T Consensus 114 vG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~-- 190 (329)
T PRK14257 114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN-- 190 (329)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--
Confidence 5999999999999999998631111127999999998752 1346999999998886 69999999865332
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....++..++.+++.++.++|.+..++.+ +..+..||||||||++|||||+.+|+|++|||||+|||+.+...+.+.|+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~L~~~l~~~~-~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~ 269 (329)
T PRK14257 191 GINDRKILEKIVEKSLKSAALWDEVKDDL-DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELIL 269 (329)
T ss_pred CCChHHHHHHHHHHHHHHcCCcchhhhhh-hCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11112233455788899998854333444 35688999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|+|+++|++. .+...+|++++|++|+++..|++++
T Consensus 270 ~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 270 ELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9876 699999999964 6777799999999999999999876
No 217
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=291.93 Aligned_cols=185 Identities=26% Similarity=0.373 Sum_probs=150.7
Q ss_pred CCCCCCcHHHHHHHHHcCcC--C---CCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLM--A---SPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAA 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~--~---~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~ 68 (551)
+||||||||||+++|+|+.+ | + +|+|.++|+++.. .+++++|++|++.+++. ||.||+.+..
T Consensus 71 ~G~nGsGKSTLl~~L~Gl~~~~p~~~~-----~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~ 144 (286)
T PRK14275 71 IGPSGCGKSTFLRAINRMNDLIPSCHT-----TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGP 144 (286)
T ss_pred ECCCCCCHHHHHHHHhcccccCCCCCC-----ceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHH
Confidence 59999999999999999854 2 4 8999999987642 12459999999988885 9999999875
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
..+. .......++++.++++.+|+.+... ...+..++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 145 ~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l 221 (286)
T PRK14275 145 RLHG--INDKKQLEEIVEKSLRKAALWDEVS-DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI 221 (286)
T ss_pred HhcC--CCcHHHHHHHHHHHHHHhCCccchh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 4321 1122334566788899998742110 112456789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++++ ++|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 222 ~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 222 EDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999975 689999999974 6778899999999999999987654
No 218
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=285.04 Aligned_cols=190 Identities=23% Similarity=0.312 Sum_probs=150.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++.+....+|+|.++|+++.. .++.++|++|++.+++ .||.||+.+....+.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~- 114 (252)
T PRK14255 37 IGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG- 114 (252)
T ss_pred ECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC-
Confidence 5999999999999999986521100127999999988642 1245999999998888 699999988754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
....+..++.+.+.++.+++...... ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 115 -~~~~~~~~~~~~~~l~~~~l~~~i~~-~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 192 (252)
T PRK14255 115 -VKDKAVLDEAVETSLKQAAIWDEVKD-HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL 192 (252)
T ss_pred -CCCHHHHHHHHHHHHHHcCCccchhh-HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 11222334556778888887421111 1245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ +.|+|+++|++. .+...+|++++|++|+++..|++.+
T Consensus 193 ~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 193 ELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9976 589999999974 6778899999999999999887654
No 219
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.6e-35 Score=324.71 Aligned_cols=178 Identities=32% Similarity=0.476 Sum_probs=147.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|.. |. +|+|.+||.++.+. +++++||+|++.+|+. |++||+.++. + .
T Consensus 382 vG~SGsGKSTL~~lL~g~~-p~-----~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~ 449 (588)
T PRK11174 382 VGPSGAGKTSLLNALLGFL-PY-----QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-D 449 (588)
T ss_pred ECCCCCCHHHHHHHHhcCC-CC-----CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-C
Confidence 5999999999999999999 76 79999999988653 3469999999999987 9999999863 1 2
Q ss_pred CCHHHHHHHH-----HHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.++++..+.+ ++.++.+ .+-.||.+|+. ...||||||||++|||||+++|++++||||||+||+.++..+.+
T Consensus 450 ~~~eei~~al~~a~l~~~i~~l--p~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~ 526 (588)
T PRK11174 450 ASDEQLQQALENAWVSEFLPLL--PQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ 526 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhc--ccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 3344333222 2233333 23457888864 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|+++. +++|+|+++|+++ ....+|+|++|++|++++.|+.++
T Consensus 527 ~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 527 ALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHH
Confidence 999886 5799999999984 345699999999999999998655
No 220
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=312.13 Aligned_cols=185 Identities=23% Similarity=0.397 Sum_probs=155.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCC---CCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++++|||+|++ .+++.+||.||+.+.....
T Consensus 284 iG~NGsGKSTLl~~l~G~~~p~-----~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 358 (501)
T PRK10762 284 SGLMGAGRTELMKVLYGALPRT-----SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358 (501)
T ss_pred ecCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence 6999999999999999999887 89999999887432 23599999995 5788999999998753211
Q ss_pred CC---CCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 72 LP---EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 72 ~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
.. ......+.+++++++++.+||. +..| ++++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 433 (501)
T PRK10762 359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSME-----QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKE 433 (501)
T ss_pred hcccccccCHHHHHHHHHHHHHhcCCCCCCcc-----CchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHH
Confidence 00 0122334456788999999994 4443 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.+.|++++++|.|||++||++ ..+...||++++|++|+++..|++++
T Consensus 434 l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 434 IYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999998899999999997 47888899999999999999998876
No 221
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=8e-34 Score=284.24 Aligned_cols=185 Identities=26% Similarity=0.320 Sum_probs=150.5
Q ss_pred CCCCCCcHHHHHHHHHcC--cCCCCCcceeeEEEECCEeCCcc----cc--eEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQ--LMASPRLHLSGLLEVNGKPSSNK----AY--KFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~--~~~~~~~~~~G~i~i~g~~~~~~----~~--~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+++|+|+ .+|. +|+|.++|.++... .. .++|++|++.+++.+|+.|++.+......
T Consensus 39 ~G~nGsGKSTLl~~i~Gl~~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~ 113 (252)
T CHL00131 39 MGPNGSGKSTLSKVIAGHPAYKIL-----EGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKR 113 (252)
T ss_pred ECCCCCCHHHHHHHHcCCCcCcCC-----CceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhh
Confidence 599999999999999997 3555 89999999987532 12 37899999999999999999987543211
Q ss_pred C----CCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCC-CCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHH
Q 008843 73 P----EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVR-GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (551)
Q Consensus 73 ~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~-~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~ 146 (551)
. ......+..+++.++++.+|+. +..+ +.+. +||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 188 (252)
T CHL00131 114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLS-----RNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALK 188 (252)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhhc-----cccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 0 0112223446678899999995 2333 3344 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchhHHhh-cccEEEEcCCeEEEecCCCC
Q 008843 147 KVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 147 ~i~~~L~~la~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.+.|++++++|+|||++||++. .+... +|++++|++|++++.|+++.
T Consensus 189 ~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 189 IIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999999878999999999975 45554 89999999999999998764
No 222
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-34 Score=289.13 Aligned_cols=190 Identities=23% Similarity=0.308 Sum_probs=149.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+|+||||||||+++|+|..++......+|+|.++|+++.. .++.++|++|++.+++. ||.||+.+....+.
T Consensus 56 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~- 133 (271)
T PRK14238 56 IGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG- 133 (271)
T ss_pred ECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC-
Confidence 5999999999999999998610000128999999988742 12459999999988885 99999998754321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.......++.+.+.++.+++.+.... ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 134 -~~~~~~~~~~~~~~l~~~~~~~~l~~-~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 211 (271)
T PRK14238 134 -IKDKKTLDEIVEKSLRGAAIWDELKD-RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211 (271)
T ss_pred -CCcHHHHHHHHHHHHHHcCCcchHHH-HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 11222334556777887765321111 1245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+...+|++++|++|+++..|++++
T Consensus 212 ~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 212 ELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9976 799999999964 6778899999999999999987654
No 223
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.3e-34 Score=347.23 Aligned_cols=188 Identities=29% Similarity=0.408 Sum_probs=165.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++++||+||++.+++.+||+|++.+.+.++. .
T Consensus 1971 LG~NGAGKTTLlkmL~Gll~pt-----sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~ 2042 (2272)
T TIGR01257 1971 LGVNGAGKTTTFKMLTGDTTVT-----SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---V 2042 (2272)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---C
Confidence 6999999999999999999987 89999999987532 3459999999999999999999998776642 2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
..++.+++++++++.+||.+.+|+ +++.||||||||++||+||+.+|++++|||||+|||+.+++.+.+.|++++
T Consensus 2043 ~~~~~~~~v~~lLe~lgL~~~~dk-----~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~ 2117 (2272)
T TIGR01257 2043 PAEEIEKVANWSIQSLGLSLYADR-----LAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 344556778899999999765554 567899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHh
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS 203 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~ 203 (551)
++|+|||++||++ +++..+|||+++|.+|++++.|++++ .+.-|.
T Consensus 2118 ~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~-Lk~~~g 2162 (2272)
T TIGR01257 2118 REGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQH-LKSKFG 2162 (2272)
T ss_pred hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH-HHHHhC
Confidence 8899999999996 58889999999999999999999887 555553
No 224
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.8e-34 Score=283.13 Aligned_cols=174 Identities=32% Similarity=0.517 Sum_probs=143.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|. +|+|.++|.++... ++.++|++|++.+++ .||.||+.+....
T Consensus 36 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~----- 104 (220)
T cd03245 36 IGRVGSGKSTLLKLLAGLYKPT-----SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL----- 104 (220)
T ss_pred ECCCCCCHHHHHHHHhcCcCCC-----CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----
Confidence 5999999999999999999887 89999999876431 245999999998887 5999998764211
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccc------cCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNV------GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.. .+.+.+.++.+++.+..+... ....+..||||||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 105 ~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 180 (220)
T cd03245 105 AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180 (220)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 11 234567788888866544321 12245799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+.|++++++ +|||+++|++. .. ..+|++++|++|++++.|
T Consensus 181 ~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 181 ERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999764 89999999975 44 689999999999998654
No 225
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-34 Score=313.10 Aligned_cols=185 Identities=23% Similarity=0.331 Sum_probs=154.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCC-CCCcceeeEEEECCEeCCcc------cceEEEEccCC---CCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~-~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~l 70 (551)
+||||||||||+|+|+|..+| + +|+|.++|+++... +..++|++|+. .+++.+||.||+.+....
T Consensus 294 ~G~NGsGKSTLlk~i~Gl~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (506)
T PRK13549 294 AGLVGAGRTELVQCLFGAYPGRW-----EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD 368 (506)
T ss_pred eCCCCCCHHHHHHHHhCCCCCCC-----CcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence 699999999999999999874 6 79999999886431 23599999995 478899999999875321
Q ss_pred CCC--CCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 71 QLP--EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 71 ~~~--~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
... ......+.+++++++++.+|+. +..| ++++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 443 (506)
T PRK13549 369 RFTGGSRIDDAAELKTILESIQRLKVKTASPE-----LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE 443 (506)
T ss_pred hhccCcccChHHHHHHHHHHHHhcCccCCCcc-----cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 111 0112334456789999999995 3443 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.++|++++++|+|||++||++. ++...||++++|++|+++..|++++
T Consensus 444 l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 444 IYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999988999999999974 7788899999999999999998876
No 226
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-34 Score=287.11 Aligned_cols=188 Identities=22% Similarity=0.337 Sum_probs=153.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---c----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---K----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.+|.+....+|+|.++|+++.. . ++.++|++|++.++ .+|+.||+.+....+.
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~- 117 (261)
T PRK14263 40 IGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR- 117 (261)
T ss_pred ECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC-
Confidence 5999999999999999998762111138999999998642 1 24599999999888 5899999998765431
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
. ..+..++++++++.++|.+..+... +..++.||||||||++|||+|+.+|++++|||||+|||+.++.++.+.|+
T Consensus 118 --~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~ 193 (261)
T PRK14263 118 --Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV 193 (261)
T ss_pred --c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 1 1234467889999999854322222 34678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEc--------CCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT--------EGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~--------~G~iv~~G~~~~ 196 (551)
++++ ++|+|+++|++. ++...+|++++|+ +|++++.|++++
T Consensus 194 ~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~ 242 (261)
T PRK14263 194 ELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQ 242 (261)
T ss_pred HHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHH
Confidence 9964 789999999975 6778899999995 899999987654
No 227
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.5e-34 Score=285.14 Aligned_cols=183 Identities=24% Similarity=0.359 Sum_probs=149.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEe-----CCcc---------cceEEEEccCCC--CCCCCCHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-----SSNK---------AYKFAYVRQEDL--FFSQLTVRETL 64 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~-----~~~~---------~~~i~yv~Q~~~--l~~~lTV~e~l 64 (551)
+||||||||||+++|+|..+|. +|+|.++|++ +... ++.++|++|++. +++.+|+.||+
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i 109 (253)
T TIGR02323 35 VGESGSGKSTLLGCLAGRLAPD-----HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI 109 (253)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence 5999999999999999999887 8999999976 4321 134899999974 55668999998
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHH
Q 008843 65 SLAAELQLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF 143 (551)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~ 143 (551)
.+..... . .....+.++.++++++.+|+.+ .. +..++.||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 110 ~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~-----~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~ 182 (253)
T TIGR02323 110 GERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRI-----DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182 (253)
T ss_pred HHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhh-----hcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 7643211 1 0111234567889999999952 33 3457789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 144 QAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 144 ~~~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++..+.+.|+++++ .|.|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 183 ~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~ 235 (253)
T TIGR02323 183 VQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQ 235 (253)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHH
Confidence 99999999999875 4899999999964 6777899999999999999987654
No 228
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.1e-34 Score=288.08 Aligned_cols=177 Identities=28% Similarity=0.444 Sum_probs=140.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|. +|+|.++|.++... +++++|++|++.+++ .||+||+.+....+
T Consensus 35 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---- 104 (238)
T cd03249 35 VGSSGCGKSTVVSLLERFYDPT-----SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA---- 104 (238)
T ss_pred EeCCCCCHHHHHHHHhccCCCC-----CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC----
Confidence 5999999999999999999887 89999999886432 245999999998886 59999998753211
Q ss_pred CCHHHHHH-----HHHHHHHHc--CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDE-----YVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
..++..+ .+.+.++.+ ++.+ .. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 105 -~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l 178 (238)
T cd03249 105 -TDEEVEEAAKKANIHDFIMSLPDGYDT----LV-GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178 (238)
T ss_pred -CHHHHHHHHHHcChHHHHHhhccccce----ee-ccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 1111111 112233333 3322 22 345689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.++
T Consensus 179 ~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~ 223 (238)
T cd03249 179 QEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDE 223 (238)
T ss_pred HHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHH
Confidence 99999997 7899999999975 455 799999999999999887654
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.6e-34 Score=314.55 Aligned_cols=183 Identities=27% Similarity=0.390 Sum_probs=154.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l 70 (551)
+||||||||||+|+|+|+.+ . +|+|.++|+++... +++++||+|+. .+++.+||.||+.+....
T Consensus 318 ~G~nGsGKSTLlk~l~Gl~~-~-----~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 318 VGESGSGKSTTGLALLRLIN-S-----QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred ECCCCCCHHHHHHHHhCcCC-C-----CcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 69999999999999999985 4 79999999876431 23599999996 488899999999887543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
+.. .....+.+++++++++.+||. +.. ++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..++
T Consensus 392 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 465 (529)
T PRK15134 392 HQP-TLSAAQREQQVIAVMEEVGLDPETR-----HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465 (529)
T ss_pred ccc-cCChHHHHHHHHHHHHHcCCCHHHH-----hcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH
Confidence 211 122344556788999999995 233 3467789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|++++++ |+|||++||++. .+...||++++|++|+++..|++++
T Consensus 466 ~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 512 (529)
T PRK15134 466 ALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCER 512 (529)
T ss_pred HHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHH
Confidence 999999865 899999999964 6778899999999999999987655
No 230
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.2e-33 Score=278.23 Aligned_cols=171 Identities=35% Similarity=0.423 Sum_probs=143.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|..+|+ +|+|.++|++.... .+...+.+.+||+||+.+...... ....+
T Consensus 54 ~G~nGsGKSTLl~~l~G~~~p~-----~G~i~~~g~~~~~~-------~~~~~~~~~~tv~enl~~~~~~~~---~~~~~ 118 (224)
T cd03220 54 IGRNGAGKSTLLRLLAGIYPPD-----SGTVTVRGRVSSLL-------GLGGGFNPELTGRENIYLNGRLLG---LSRKE 118 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEchhh-------cccccCCCCCcHHHHHHHHHHHcC---CCHHH
Confidence 5999999999999999999887 89999999875321 122345677999999988765321 22344
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
.+++++++++.+||.+..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~ 193 (224)
T cd03220 119 IDEKIDEIIEFSELGDFIDL-----PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193 (224)
T ss_pred HHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 55678889999999765554 4578999999999999999999999999999999999999999999999987789
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
|||+++|++. ++...+|++++|++|++++.|
T Consensus 194 tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 194 TVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999964 677789999999999998765
No 231
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=6.5e-34 Score=272.98 Aligned_cols=156 Identities=32% Similarity=0.481 Sum_probs=131.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCC--CCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQED--LFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ++.++|++|++ .++ ..||+||+.+.....
T Consensus 24 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~ 97 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGLLRPQ-----SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFGPLNL 97 (190)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHHHHHHc
Confidence 5999999999999999999887 89999999886411 23599999997 345 479999999865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
.....+..++++++++.+||.+..| +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 98 ---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 169 (190)
T TIGR01166 98 ---GLSEAEVERRVREALTAVGASGLRE-----RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169 (190)
T ss_pred ---CCCHHHHHHHHHHHHHHcCchhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 1233445567889999999965444 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCc
Q 008843 152 LRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 152 L~~la~~g~tvi~~~H~~~ 170 (551)
|++++++|+|||+++|++.
T Consensus 170 l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 170 LRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHcCCEEEEEeeccc
Confidence 9999888999999999974
No 232
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=284.69 Aligned_cols=190 Identities=22% Similarity=0.326 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++.+....+|+|.+||+++... +++++|++|++.+++. |+.||+.+.....
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~-- 111 (250)
T PRK14266 35 IGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH-- 111 (250)
T ss_pred ECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--
Confidence 59999999999999999864110000279999999987431 2459999999988885 9999998765332
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.....+..++++.+.++.+|+.+.... ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~ 190 (250)
T PRK14266 112 GEDDEDFIEERVEESLKAAALWDEVKD-KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190 (250)
T ss_pred CCCCHHHHHHHHHHHHHHcCCchhHHH-HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 112233455678899999998543221 1245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ +.|||+++|++. ++...+|++++|++|++++.|++++
T Consensus 191 ~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 191 KLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9965 789999999974 6788899999999999999988655
No 233
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.2e-34 Score=314.98 Aligned_cols=186 Identities=28% Similarity=0.366 Sum_probs=153.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEEC-CEe---CCc--------ccceEEEEccCCCCCCCCCHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN-GKP---SSN--------KAYKFAYVRQEDLFFSQLTVRETLSLAA 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~-g~~---~~~--------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~ 68 (551)
+||||||||||+|+|+|..+|+ +|+|.++ |.+ +.. .+++++|++|++.+++.+||.||+.+..
T Consensus 316 ~G~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 390 (520)
T TIGR03269 316 VGTSGAGKTTLSKIIAGVLEPT-----SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390 (520)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence 5999999999999999999887 8999996 532 111 1245999999999999999999998764
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+. ...++.+++++++++.+||.+.......++++++|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 391 ~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l 466 (520)
T TIGR03269 391 GLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDV 466 (520)
T ss_pred HcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 331 1233345678899999999642100122456789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.|++++++ |.|||++||++. .+...||++++|++|+++..|++++
T Consensus 467 ~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 467 THSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999864 899999999974 6788899999999999999887654
No 234
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-34 Score=312.24 Aligned_cols=185 Identities=20% Similarity=0.310 Sum_probs=155.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCC---CCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... +..++|++|++ .+++.+|+.||+.+.....
T Consensus 285 iG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~ 359 (501)
T PRK11288 285 FGLVGAGRSELMKLLYGATRRT-----AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359 (501)
T ss_pred EcCCCCCHHHHHHHHcCCCcCC-----CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence 6999999999999999999887 89999999886432 24599999996 4889999999998753211
Q ss_pred C-CCC--CCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 72 L-PEI--LSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 72 ~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
. +.. ....+.++.++++++.+|+. +..| +.+..|||||||||+||++|+.+|++|+|||||+|||+.++.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 434 (501)
T PRK11288 360 HLRAGCLINNRWEAENADRFIRSLNIKTPSRE-----QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434 (501)
T ss_pred hcccccccChHHHHHHHHHHHHhcCcccCCcc-----CccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHH
Confidence 1 000 12233345688999999993 4444 4566899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++|++++++|.|||++|||+ ..+...+|++++|++|++++.|++++
T Consensus 435 l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 435 IYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999998899999999996 47888999999999999999998876
No 235
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.9e-34 Score=311.90 Aligned_cols=185 Identities=20% Similarity=0.295 Sum_probs=153.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCC---CCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... +.+++|++|+. .+++.+|+.|++.......
T Consensus 295 ~G~NGsGKSTLl~~i~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~ 369 (510)
T PRK15439 295 AGVVGAGRTELAETLYGLRPAR-----GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369 (510)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence 6999999999999999999887 89999999987532 23599999984 5888899999986431111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
........+.++.++++++.+||. +..| ++++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~ 444 (510)
T PRK15439 370 RGFWIKPARENAVLERYRRALNIKFNHAE-----QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444 (510)
T ss_pred hccccChHHHHHHHHHHHHHcCCCCCCcc-----CccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH
Confidence 110111222345688999999995 4444 4567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|++++++|.|||+++|++. .+...||++++|++|+++..|.+++
T Consensus 445 ~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 445 LIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999988999999999974 7888899999999999999988765
No 236
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-34 Score=284.98 Aligned_cols=191 Identities=27% Similarity=0.378 Sum_probs=154.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCC-CcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASP-RLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~-~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..+|+. .+.+.|++.++|++.... +.+++|++|++.+++.+||.||+.+......
T Consensus 42 ~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~-- 119 (257)
T PRK14246 42 MGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG-- 119 (257)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--
Confidence 59999999999999999988752 233456666666655321 3459999999999999999999998754321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
...+++..+++++.++.+|+.+.... .-+..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~ 198 (257)
T PRK14246 120 IKEKREIKKIVEECLRKVGLWKEVYD-RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198 (257)
T ss_pred CCCHHHHHHHHHHHHHHcCCCccchh-hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 12234455678899999999542111 12346778999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++ +.|||+++|++. .+...||++++|++|+++..|++++
T Consensus 199 ~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 199 LKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred Hhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 965 699999999964 6778899999999999999998765
No 237
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-34 Score=285.61 Aligned_cols=177 Identities=26% Similarity=0.385 Sum_probs=140.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|||||||||||++|+|+.+|. +|+|.++|.++... ++.++|++|+..+++. ||.||+.+....
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~----- 103 (229)
T cd03254 35 VGPTGAGKTTLINLLMRFYDPQ-----KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN----- 103 (229)
T ss_pred ECCCCCCHHHHHHHHhcCcCCC-----CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----
Confidence 5999999999999999999887 89999999876431 2459999999988886 999999875321
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccC-------ccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCAD-------SNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
... +.+++.++.+++.+..+ +. .+..+++||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 104 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l 178 (229)
T cd03254 104 ATD----EEVIEAAKEAGAHDFIMKLPNGYDTV-LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178 (229)
T ss_pred CCH----HHHHHHHHHhChHHHHHhCcccccCH-hhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 111 12333344443322111 11 2345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.|++++ +|+|||++||++. .+. .+|++++|++|++++.|+.++
T Consensus 179 ~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 179 QEALEKLM-KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 99999996 5899999999975 454 599999999999998876543
No 238
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-34 Score=288.36 Aligned_cols=184 Identities=28% Similarity=0.424 Sum_probs=149.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc--ceEEEEccCCCCC--CCCCHHHHHHHHHHcCCC-CC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA--YKFAYVRQEDLFF--SQLTVRETLSLAAELQLP-EI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~--~~i~yv~Q~~~l~--~~lTV~e~l~~~~~l~~~-~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++.... ..++|++|++.+. ...+++|++.+....... ..
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 113 (272)
T PRK15056 39 VGVNGSGKSTLFKALMGFVRLA-----SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR 113 (272)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence 5999999999999999999887 899999999875332 3599999997642 234788988654211000 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
....+.+++++++++.+||.+..|+ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 114 ~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~ 188 (272)
T PRK15056 114 RAKKRDRQIVTAALARVDMVEFRHR-----QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL 188 (272)
T ss_pred CCCHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 1112334567889999999765544 56689999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++|+|||+++|++. .+...+|+++++ +|++++.|++++
T Consensus 189 ~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 189 RDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHh
Confidence 888999999999964 677889999877 899999988765
No 239
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.8e-34 Score=313.88 Aligned_cols=191 Identities=25% Similarity=0.328 Sum_probs=155.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCC--CCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDL--FFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||+|+|+|.++|......+|+|.++|+++... .+++|||+|+.. +++.+|++|++.+...
T Consensus 41 iG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~ 120 (529)
T PRK15134 41 VGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS 120 (529)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHH
Confidence 69999999999999999998621111289999999986431 135999999974 6777899999876543
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
... .....+..++++++++.+||.+.. ...++++++|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus 121 ~~~--~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~ 196 (529)
T PRK15134 121 LHR--GMRREAARGEILNCLDRVGIRQAA--KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL 196 (529)
T ss_pred Hhc--CCCHHHHHHHHHHHHHHCCCCChH--HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH
Confidence 211 123455667889999999996421 0124567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|++++++ |.|||++||++. .+...+|++++|++|++++.|++++
T Consensus 197 ~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~ 243 (529)
T PRK15134 197 QLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAAT 243 (529)
T ss_pred HHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999865 899999999974 6778899999999999999988754
No 240
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-34 Score=319.14 Aligned_cols=186 Identities=25% Similarity=0.326 Sum_probs=156.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCC-------------c-----c-cceEEEEccCC--CCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS-------------N-----K-AYKFAYVRQED--LFFSQLT 59 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~-------------~-----~-~~~i~yv~Q~~--~l~~~lT 59 (551)
+||||||||||+|+|+|+++|+ +|+|.++|..+. . . .+++|||+|++ .+++.+|
T Consensus 48 vG~nGsGKSTLl~~l~Gll~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t 122 (623)
T PRK10261 48 VGESGSGKSVTALALMRLLEQA-----GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122 (623)
T ss_pred ECCCCChHHHHHHHHHcCCCCC-----CeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence 6999999999999999999887 799999886431 0 0 13599999997 6889999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCC
Q 008843 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTG 139 (551)
Q Consensus 60 V~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsG 139 (551)
|.||+.+....+. ..+..+.+++++++++.+||.+. ....+.++.+|||||||||+||+||+.+|++|||||||+|
T Consensus 123 v~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~--~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~ 198 (623)
T PRK10261 123 VGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA--QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTA 198 (623)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh--hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 9999999865421 12445566788999999999531 1123457889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 140 LDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 140 LD~~~~~~i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
||+.++.++.++|++++++ |+|||++||++ ..+...||+|++|++|++++.|++++
T Consensus 199 LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~ 255 (623)
T PRK10261 199 LDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQ 255 (623)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHH
Confidence 9999999999999999865 89999999996 46778899999999999999888755
No 241
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-32 Score=311.63 Aligned_cols=181 Identities=34% Similarity=0.506 Sum_probs=150.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|||||||||++++|.+.+.|+ +|+|.+||.++... +.++|.|.|++.+|.. |++||+.|+.. +
T Consensus 385 VG~SGsGKST~i~LL~RfydP~-----~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~-----d 453 (1228)
T KOG0055|consen 385 VGPSGSGKSTLIQLLARFYDPT-----SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKP-----D 453 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCC-----CceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCC-----c
Confidence 6999999999999999999998 89999999998764 3469999999998885 99999998642 2
Q ss_pred CCHHHHHHHH---HHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 76 LSVEERDEYV---NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 76 ~~~~~~~~~v---~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.+.++..+.. +..--...|.+..||.+|++.+ +||||||||++|||||++||+||+||||||+||+.+...+.+.|
T Consensus 454 at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL 532 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL 532 (1228)
T ss_pred ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH
Confidence 2333333222 1111223445566899997544 59999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.. +|+|.|+++|+.+ .+.+ +|+++++++|++|+.|+.+|
T Consensus 533 d~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 533 DKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred HHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHHH
Confidence 8865 5899999999975 6766 89999999999999999877
No 242
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=287.64 Aligned_cols=188 Identities=26% Similarity=0.354 Sum_probs=149.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++......+|+|.++|+++.. .+++++|++|+..+++. ||.||+.+....+.
T Consensus 71 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~- 148 (285)
T PRK14254 71 IGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG- 148 (285)
T ss_pred ECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC-
Confidence 5999999999999999998631000027999999988632 13469999999988886 99999988765431
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
... +.+++++++++.+||.+... ..-+..+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 149 --~~~-~~~~~~~~~l~~~~l~~~i~-~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~ 224 (285)
T PRK14254 149 --YDG-DIDERVEESLRRAALWDEVK-DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIE 224 (285)
T ss_pred --CcH-HHHHHHHHHHHHcCCCchhH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 122 34456889999999853111 11244678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEE-EEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIV-LLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~-lL~~G~iv~~G~~~~ 196 (551)
+++++ .|||+++|++. .+...+|+++ +|++|+++..|++++
T Consensus 225 ~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 225 ELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 99864 89999999964 6777899975 679999999887654
No 243
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=286.70 Aligned_cols=188 Identities=25% Similarity=0.330 Sum_probs=150.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|+.++......+|+|.++|+++.. .+++++|++|+..+++. ||.||+.+....+.
T Consensus 52 iG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~- 129 (274)
T PRK14265 52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG- 129 (274)
T ss_pred ECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC-
Confidence 5999999999999999997532100127999999988642 12459999999988875 99999988654321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.. .+.++.+++.++.+++..... ...+..+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+
T Consensus 130 --~~-~~~~~~~~~~l~~~~l~~~l~-~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 205 (274)
T PRK14265 130 --YK-GNLDELVEDSLRRAAIWEEVK-DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205 (274)
T ss_pred --ch-HHHHHHHHHHHHHcccchhhH-HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 123345677888888742111 12245678999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEc---------CCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT---------EGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~---------~G~iv~~G~~~~ 196 (551)
++++ +.|||+++|++. .+...+|++++|+ +|++++.|++++
T Consensus 206 ~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~ 255 (274)
T PRK14265 206 ELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQ 255 (274)
T ss_pred HHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 9975 689999999974 6788899999997 899999999866
No 244
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-33 Score=309.95 Aligned_cols=185 Identities=24% Similarity=0.333 Sum_probs=154.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCC-CCCcceeeEEEECCEeCCcc------cceEEEEccCC---CCCCCCCHHHHHHHHHH-
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAE- 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~-~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~- 69 (551)
+||||||||||||+|+|..+| . +|+|.++|+++... ++++|||+|+. .+++.+||+||+.+...
T Consensus 292 ~G~NGsGKSTLl~~l~G~~~p~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~ 366 (500)
T TIGR02633 292 AGLVGAGRTELVQALFGAYPGKF-----EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK 366 (500)
T ss_pred eCCCCCCHHHHHHHHhCCCCCCC-----CeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence 699999999999999999975 5 79999999887431 24599999995 58999999999987542
Q ss_pred -cCCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 70 -LQLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 70 -l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
..........+.+++++++++.++|.+ .. +++++.||||||||++||++|+.+|++|+|||||+|||+.++..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 441 (500)
T TIGR02633 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASP-----FLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYE 441 (500)
T ss_pred hhccCCcCCHHHHHHHHHHHHHhcCccCCCc-----cCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 110001123334567889999999953 23 34567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++.|++++++|.|||++|||+. .+...||++++|++|+++..++.++
T Consensus 442 l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 442 IYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999988999999999974 7788899999999999998876544
No 245
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.9e-34 Score=312.81 Aligned_cols=182 Identities=28% Similarity=0.339 Sum_probs=152.1
Q ss_pred CCCCCCcHHHHHHHHHcCc--CCCCCcceeeEEEEC-----------------------CEeCC-------c--------
Q 008843 1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVN-----------------------GKPSS-------N-------- 40 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~--~~~~~~~~~G~i~i~-----------------------g~~~~-------~-------- 40 (551)
+||||||||||||+|+|.. +|+ +|+|.++ |.++. .
T Consensus 32 iG~nGsGKSTLl~~l~Gl~~~~p~-----~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (520)
T TIGR03269 32 LGRSGAGKSVLMHVLRGMDQYEPT-----SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR 106 (520)
T ss_pred ECCCCCCHHHHHHHHhhcccCCCC-----ceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHH
Confidence 6999999999999999996 565 7999987 22110 0
Q ss_pred ccceEEEEccC-CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHH
Q 008843 41 KAYKFAYVRQE-DLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS 119 (551)
Q Consensus 41 ~~~~i~yv~Q~-~~l~~~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvs 119 (551)
.++.++||+|+ +.+++.+||+||+.+...... ....+.+++++++++.+||++..+ +.+++|||||||||+
T Consensus 107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrv~ 178 (520)
T TIGR03269 107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEAVGRAVDLIEMVQLSHRIT-----HIARDLSGGEKQRVV 178 (520)
T ss_pred hhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhh-----cCcccCCHHHHHHHH
Confidence 12358999997 678899999999998754321 234455678899999999965443 457789999999999
Q ss_pred HHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 120 Ia~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus 179 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 255 (520)
T TIGR03269 179 LARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDE 255 (520)
T ss_pred HHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHH
Confidence 99999999999999999999999999999999999975 5899999999974 6778899999999999999888765
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=284.86 Aligned_cols=188 Identities=23% Similarity=0.326 Sum_probs=149.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+|+|+|+.++.+....+|+|.++|+++.. .+++++|++|++.+++. ||.||+.+....+.
T Consensus 42 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~- 119 (264)
T PRK14243 42 IGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARING- 119 (264)
T ss_pred ECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcC-
Confidence 5999999999999999987531000127999999987632 12459999999988884 99999988654321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.. .+.+++++++++.+++.+..+. ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 120 --~~-~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 195 (264)
T PRK14243 120 --YK-GDMDELVERSLRQAALWDEVKD-KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMH 195 (264)
T ss_pred --cc-hHHHHHHHHHHHHhCchhhHHH-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11 2234556778888887432111 1245678899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEc---------CCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLT---------EGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~---------~G~iv~~G~~~~ 196 (551)
++++ ++|||+++|++. .+...||++++|+ +|++++.|++++
T Consensus 196 ~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~ 245 (264)
T PRK14243 196 ELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEK 245 (264)
T ss_pred HHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 9976 589999999964 7888999999998 899999998765
No 247
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-33 Score=274.02 Aligned_cols=166 Identities=29% Similarity=0.380 Sum_probs=140.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++... .++++|++|++.+++.+|+.||+.+....+. .
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~p~-----~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~- 104 (204)
T PRK13538 33 EGPNGAGKTSLLRILAGLARPD-----AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG--P- 104 (204)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC--c-
Confidence 5999999999999999999887 89999999886532 3459999999999999999999988764321 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
+.+++++++++.+||.+..| ..++.||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++
T Consensus 105 ---~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 176 (204)
T PRK13538 105 ---GDDEALWEALAQVGLAGFED-----VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176 (204)
T ss_pred ---cHHHHHHHHHHHcCCHHHhh-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 22456889999999975544 3567899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEE
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
++|.|||+++|++. .+...-+|++++
T Consensus 177 ~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 177 EQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HCCCEEEEEecChh-hhccCCceEEec
Confidence 78899999999975 555545566665
No 248
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-34 Score=268.27 Aligned_cols=138 Identities=37% Similarity=0.641 Sum_probs=126.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... +++++|++|++.+++.+|+.||+.
T Consensus 32 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----------- 95 (173)
T cd03230 32 LGPNGAGKTTLIKIILGLLKPD-----SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----------- 95 (173)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence 5999999999999999999887 89999999987532 346999999999999999999863
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 96 ---------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 96 ---------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142 (173)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
++|.|+|+++|++. .+...+|++++|++|++
T Consensus 143 ~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 143 KEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 77899999999974 67778999999999874
No 249
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.5e-34 Score=318.96 Aligned_cols=178 Identities=25% Similarity=0.372 Sum_probs=148.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||.++++. +++++||+|++.+|+. |++||+.++. +..
T Consensus 375 vG~sGsGKSTLl~ll~gl~~p~-----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~ 444 (582)
T PRK11176 375 VGRSGSGKSTIANLLTRFYDID-----EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQ 444 (582)
T ss_pred ECCCCCCHHHHHHHHHhccCCC-----CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCC
Confidence 5999999999999999999987 89999999987653 3569999999999986 9999998753 111
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +++.++..|+ .+-.||.+|+. ...||||||||++|||+|+++|++++||||||+||+.++..+
T Consensus 445 ~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i 519 (582)
T PRK11176 445 YSREQ----IEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_pred CCHHH----HHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 23333 4444444443 33457888864 678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.|+++. +++|+|+++|+++ ....||+|++|++|++++.|+.++
T Consensus 520 ~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 520 QAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999985 4799999999974 456699999999999999998765
No 250
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.4e-33 Score=280.10 Aligned_cols=185 Identities=25% Similarity=0.299 Sum_probs=147.9
Q ss_pred CCCCCCcHHHHHHHHHcCc--CCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHH-cC
Q 008843 1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAE-LQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~--~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~-l~ 71 (551)
+||||||||||+++|+|+. +|. +|+|.++|+++... +..++|++|++.+++.+|+.+++.+... .+
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 107 (248)
T PRK09580 33 MGPNGSGKSTLSATLAGREDYEVT-----GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 107 (248)
T ss_pred ECCCCCCHHHHHHHHcCCccCCCC-----ceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhh
Confidence 5999999999999999995 455 89999999876431 1349999999998988888777654321 11
Q ss_pred CC---CCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcC-CCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHH
Q 008843 72 LP---EILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKV-RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (551)
Q Consensus 72 ~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~-~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~ 146 (551)
.. ......+..+++++.++.+++. +..+. .+ ++||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~ 182 (248)
T PRK09580 108 SYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTR-----SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 182 (248)
T ss_pred cccccccchHHHHHHHHHHHHHHcCCChhhccc-----CCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 00 0112223456778899999994 23332 33 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchhHHhh-cccEEEEcCCeEEEecCCCC
Q 008843 147 KVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 147 ~i~~~L~~la~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.+.|++++++|+|||+++|++. .+... +|++++|++|++++.|+++.
T Consensus 183 ~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 183 IVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 999999999888899999999975 45555 89999999999999998764
No 251
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-33 Score=275.26 Aligned_cols=168 Identities=28% Similarity=0.354 Sum_probs=144.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... .+.++|++|++.+++.+|+.||+.+....+. .
T Consensus 43 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~-- 112 (214)
T PRK13543 43 QGDNGAGKTTLLRVLAGLLHVE-----SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R-- 112 (214)
T ss_pred EcCCCCCHHHHHHHHhCCCCCC-----CeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C--
Confidence 5999999999999999999887 89999999987542 2359999999999999999999988754321 1
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
..++.++++++.++|.+..+ ..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 113 -~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 113 -RAKQMPGSALAIVGLAGYED-----TLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186 (214)
T ss_pred -cHHHHHHHHHHHcCChhhcc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 12345678899999965544 456789999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
|.|+|+++|++ .++...+|++++++.
T Consensus 187 ~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 187 GGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999996 478889999999863
No 252
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.4e-33 Score=269.00 Aligned_cols=142 Identities=30% Similarity=0.488 Sum_probs=127.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCC---CCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... +++++|++|+. .+++.+|++||+.+...
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-- 104 (182)
T cd03215 32 AGLVGNGQTELAEALFGLRPPA-----SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-- 104 (182)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence 5999999999999999999887 89999999887542 24599999984 58888999999876421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 105 --------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 105 --------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred --------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 152 L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
|++++++|+|+|+++|++ .++...+|++++|++|++
T Consensus 147 l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 147 IRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 999987789999999996 478888999999999974
No 253
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9e-34 Score=317.14 Aligned_cols=176 Identities=26% Similarity=0.412 Sum_probs=150.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+|+|+|+.+|+ +|+|.+||.+++.. +++++||+|++.+|+. |++||+.++..
T Consensus 373 vG~SGsGKSTLl~lL~gl~~p~-----~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------ 440 (592)
T PRK10790 373 VGHTGSGKSTLASLLMGYYPLT-----EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD------ 440 (592)
T ss_pred ECCCCCCHHHHHHHHhcccCCC-----CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC------
Confidence 5999999999999999999997 89999999988653 3569999999999997 99999998631
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++ +.++++++..|+. +-.||.+|+ ....||||||||++|||||+++|++++||||||+||+.++..+
T Consensus 441 ~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i 515 (592)
T PRK10790 441 ISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515 (592)
T ss_pred CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 122 2355566666643 334777776 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++.+ ++|+|+++|+++ ....+|+|++|++|+++..|+.++
T Consensus 516 ~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 516 QQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999865 699999999974 455699999999999999998766
No 254
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-33 Score=297.93 Aligned_cols=185 Identities=29% Similarity=0.422 Sum_probs=164.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC-C
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL-P 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~-~ 73 (551)
+|.||||||||+|+|+|.++|+ +|+|.+||++.... ...|+.|.|+..+.|+|||.||+.++...+. .
T Consensus 40 ~GeNGAGKSTLmKiLsGv~~p~-----~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~ 114 (500)
T COG1129 40 LGENGAGKSTLMKILSGVYPPD-----SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF 114 (500)
T ss_pred ecCCCCCHHHHHHHHhCcccCC-----CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence 6999999999999999999998 89999999987533 2349999999999999999999998876544 2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
......+.++++.++|+.+|+....+ ..++.||+||||.|.||+||..++++++|||||+.|+...+..+++.++
T Consensus 115 g~id~~~m~~~A~~~l~~lg~~~~~~-----~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir 189 (500)
T COG1129 115 GLIDRKAMRRRARELLARLGLDIDPD-----TLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR 189 (500)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCChh-----hhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 44667788889999999999953344 4566799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC-CCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP-ARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~-~~~ 196 (551)
+++++|.+||+++|.. .+++..|||+.+|+||+.+..++ .++
T Consensus 190 ~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 190 RLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred HHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecccccC
Confidence 9999999999999996 68999999999999999999888 354
No 255
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.5e-34 Score=322.81 Aligned_cols=174 Identities=28% Similarity=0.379 Sum_probs=147.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||+++... ++.+|||+|++.+|+. |++||+.++..
T Consensus 485 vG~sGsGKSTLlklL~gl~~p~-----~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------ 552 (686)
T TIGR03797 485 VGPSGSGKSTLLRLLLGFETPE-----SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------ 552 (686)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------
Confidence 5999999999999999999987 89999999998653 3569999999999987 99999988532
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+.+ .+.++++..|+. +..||.+|+ ...+||||||||++|||||+++|++++||||||+||+.+..++
T Consensus 553 ~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i 627 (686)
T TIGR03797 553 LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627 (686)
T ss_pred CCHH----HHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 2222 344555555543 245787875 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++ ++|+|+++|+++ ....+|+|++|++|++++.|+.++
T Consensus 628 ~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 628 SESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 9999886 589999999974 345699999999999999998765
No 256
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.7e-33 Score=277.36 Aligned_cols=175 Identities=26% Similarity=0.377 Sum_probs=144.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++... +++++|++|++.+++. ||+||+.+....+..
T Consensus 39 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~-- 110 (225)
T PRK10247 39 TGPSGCGKSTLLKIVASLISPT-----SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ-- 110 (225)
T ss_pred ECCCCCCHHHHHHHHhcccCCC-----CCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcCC--
Confidence 5999999999999999998887 89999999876532 2459999999988875 999999886543211
Q ss_pred CCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
. ..+++++++++.+|+. ... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 111 -~--~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 111 -Q--PDPAIFLDDLERFALPDTIL-----TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred -C--hHHHHHHHHHHHcCCChHHh-----cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1 1234577899999995 233 345778999999999999999999999999999999999999999999999
Q ss_pred HHh-CCCEEEEEecCCchhHHhhcccEEEEc-CCeEEEecC
Q 008843 155 LAQ-DGHTVICSIHQPRGSVYFKFDDIVLLT-EGKLVYAGP 193 (551)
Q Consensus 155 la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~-~G~iv~~G~ 193 (551)
+++ .|.|||+++|++. .+. .+|++++|+ ++..+.+|.
T Consensus 183 ~~~~~~~tvii~sh~~~-~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 183 YVREQNIAVLWVTHDKD-EIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHhcCCEEEEEECChH-HHH-hCCEEEEEecccchHhhhh
Confidence 986 4899999999975 454 599999994 555555553
No 257
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=287.43 Aligned_cols=192 Identities=28% Similarity=0.373 Sum_probs=150.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+|||||||||||++|+|+.++......+|+|.++|.++... +++++|++|+..+++. ||+||+.+....+..
T Consensus 77 vG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 155 (305)
T PRK14264 77 IGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGD 155 (305)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhccc
Confidence 59999999999999999985210001289999999886431 2459999999988884 999999987543210
Q ss_pred C---------CCC-HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHH
Q 008843 74 E---------ILS-VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF 143 (551)
Q Consensus 74 ~---------~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~ 143 (551)
. ... ....++.++++++.+++.+..++. .+..+++||||||||++||++|+.+|++|||||||+|||+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~ 234 (305)
T PRK14264 156 INTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR-LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234 (305)
T ss_pred ccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH-hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0 011 123356688899999885322222 24567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccE-EEEcCCeEEEecCCCC
Q 008843 144 QAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI-VLLTEGKLVYAGPARD 196 (551)
Q Consensus 144 ~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v-~lL~~G~iv~~G~~~~ 196 (551)
++..+.+.|+++++ +.|||+++|++. .+...+|++ ++|++|++++.|++++
T Consensus 235 ~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~ 286 (305)
T PRK14264 235 ATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDK 286 (305)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHH
Confidence 99999999999987 489999999974 677889996 5779999999987654
No 258
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.7e-33 Score=271.24 Aligned_cols=163 Identities=31% Similarity=0.383 Sum_probs=140.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+|+||||||||+++|+|..+|+ +|+|.++|.+.... +++++|++|++.+++.+|++||+.+.... .
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~ 101 (201)
T cd03231 32 TGPNGSGKTTLLRILAGLSPPL-----AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H 101 (201)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c
Confidence 5999999999999999999887 89999999886432 24699999999999999999999875321 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
.+++++++++.+|+.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 102 ----~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 172 (201)
T cd03231 102 ----SDEQVEEALARVGLNGFED-----RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172 (201)
T ss_pred ----cHHHHHHHHHHcCChhhhc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 2356788999999976544 3567899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEE
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
++|+|+|+++|++. +....+|+++++
T Consensus 173 ~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 173 ARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred hCCCEEEEEecCch-hhhhccceeEec
Confidence 88999999999975 566678999877
No 259
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.9e-33 Score=277.55 Aligned_cols=163 Identities=25% Similarity=0.326 Sum_probs=138.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|..+|+ +|+|.++|. +++|++|+......+||+|++.+...... .
T Consensus 31 ~G~NGsGKSTLlk~L~G~~~p~-----~G~i~~~g~-------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~----~--- 91 (246)
T cd03237 31 LGPNGIGKTTFIKMLAGVLKPD-----EGDIEIELD-------TVSYKPQYIKADYEGTVRDLLSSITKDFY----T--- 91 (246)
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-----CCeEEECCc-------eEEEecccccCCCCCCHHHHHHHHhhhcc----c---
Confidence 5999999999999999999887 899999885 58999999887778999999976533111 0
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g 159 (551)
....++++++.+||.+..| +.++.||||||||++||++|+.+|++++|||||++||+.++..+.+.|+++++ .|
T Consensus 92 ~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 166 (246)
T cd03237 92 HPYFKTEIAKPLQIEQILD-----REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166 (246)
T ss_pred cHHHHHHHHHHcCCHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 1234678899999965444 45678999999999999999999999999999999999999999999999985 48
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
+|||+++|++. .+...+|++++|+++..
T Consensus 167 ~tiiivsHd~~-~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 167 KTAFVVEHDII-MIDYLADRLIVFEGEPS 194 (246)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEcCCCe
Confidence 99999999964 67778999999966433
No 260
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-34 Score=281.30 Aligned_cols=177 Identities=28% Similarity=0.465 Sum_probs=140.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|+.+|. +|+|.++|+++... ++.++|++|+..+++ .||+||+.+....
T Consensus 33 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~----- 101 (236)
T cd03253 33 VGPSGSGKSTILRLLFRFYDVS-----SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD----- 101 (236)
T ss_pred ECCCCCCHHHHHHHHhcccCCC-----CCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----
Confidence 5999999999999999999887 89999999886532 235999999998886 6999999875321
Q ss_pred CCHHHHHH-----HHHHHHHHc--CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDE-----YVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
....+..+ .+.+.++.+ ++. +.. ++.++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~l~~~~~----~~~-~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l 176 (236)
T cd03253 102 ATDEEVIEAAKAAQIHDKIMRFPDGYD----TIV-GERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176 (236)
T ss_pred CCHHHHHHHHHHcCcHHHHHhcccccc----chh-hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 11111111 122233333 232 222 335779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++++ |+|||+++|++. .+.. +|++++|++|++++.|+.++
T Consensus 177 ~~~l~~~~~-~~tiii~sh~~~-~~~~-~d~~~~l~~g~i~~~~~~~~ 221 (236)
T cd03253 177 QAALRDVSK-GRTTIVIAHRLS-TIVN-ADKIIVLKDGRIVERGTHEE 221 (236)
T ss_pred HHHHHHhcC-CCEEEEEcCCHH-HHHh-CCEEEEEECCEEEeeCCHHH
Confidence 999999987 999999999975 4544 99999999999998876543
No 261
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-33 Score=278.57 Aligned_cols=174 Identities=22% Similarity=0.279 Sum_probs=149.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|+.+|. +|+|.++|. +++++|+..+.+.+|+.||+.+..... ....++
T Consensus 56 iG~NGsGKSTLlk~L~Gl~~p~-----~G~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~ 119 (264)
T PRK13546 56 VGINGSGKSTLSNIIGGSLSPT-----VGKVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKE 119 (264)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----ceEEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHH
Confidence 5999999999999999999887 899999985 356778877888899999998765432 123445
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
..+.++++++.++|.+..+ ..++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+
T Consensus 120 ~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~ 194 (264)
T PRK13546 120 IKAMTPKIIEFSELGEFIY-----QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNK 194 (264)
T ss_pred HHHHHHHHHHHcCCchhhc-----CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCC
Confidence 5566788899999865544 35678999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|||+++|++. .+...+|++++|++|+++..|+.++
T Consensus 195 tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~ 229 (264)
T PRK13546 195 TIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDD 229 (264)
T ss_pred EEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHH
Confidence 9999999964 6778899999999999999987655
No 262
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6.6e-34 Score=316.60 Aligned_cols=179 Identities=30% Similarity=0.492 Sum_probs=152.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|.|.|..+|+ +|+|.+||.+++.. +++++||+||..+|. -||+||+.++.. .
T Consensus 361 VG~sGsGKSTl~~LL~r~~~~~-----~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~ 429 (567)
T COG1132 361 VGPSGSGKSTLIKLLLRLYDPT-----SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----D 429 (567)
T ss_pred ECCCCCCHHHHHHHHhccCCCC-----CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----C
Confidence 5999999999999999999987 89999999998764 356999999999999 599999999742 1
Q ss_pred CCHHHHHHHH-----HHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.++++..+.+ .+.++.+ .+..||.+| +....||||||||++||||+++||++++||||||+||+.+...+.+
T Consensus 430 at~eei~~a~k~a~~~d~I~~l--p~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~ 506 (567)
T COG1132 430 ATDEEIEEALKLANAHEFIANL--PDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506 (567)
T ss_pred CCHHHHHHHHHHhChHHHHHhC--cccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHH
Confidence 3444444333 3334444 345689998 4677899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.++++. +++|+++++|+++ .+.. +|+|++|++|++++.|+.++
T Consensus 507 ~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 507 ALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHHH
Confidence 999887 5789999999984 5555 89999999999999999876
No 263
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=6e-34 Score=280.56 Aligned_cols=174 Identities=29% Similarity=0.449 Sum_probs=138.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... +++++|++|+..+++ .||+||+.+.........
T Consensus 46 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~ 119 (226)
T cd03248 46 VGPSGSGKSTVVALLENFYQPQ-----GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFEC 119 (226)
T ss_pred ECCCCCCHHHHHHHHhcCcCCC-----CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHH
Confidence 5999999999999999999887 89999999876432 245999999998886 599999987542110000
Q ss_pred CCHHHHHHHHHHHHHHc--CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.........+++.++.+ |+++.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 120 ~~~~~~~~~~~~~l~~l~~gl~~~~-----~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 194 (226)
T cd03248 120 VKEAAQKAHAHSFISELASGYDTEV-----GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY 194 (226)
T ss_pred HHHHHHHcCcHHHHHhccccccchh-----hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00011112356778888 775433 34577899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
++++ ++|+|+++|++. .+.. +|++++|++|++
T Consensus 195 ~~~~-~~tii~~sh~~~-~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 195 DWPE-RRTVLVIAHRLS-TVER-ADQILVLDGGRI 226 (226)
T ss_pred HHcC-CCEEEEEECCHH-HHHh-CCEEEEecCCcC
Confidence 9875 689999999976 4554 999999999874
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.6e-33 Score=270.16 Aligned_cols=149 Identities=29% Similarity=0.428 Sum_probs=130.1
Q ss_pred CCCCCCcHHHHHHHHHcCc--CCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~--~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|.. +|+ +|+|.++|+++... +..++|++|+..+++..|+++++.
T Consensus 32 ~G~nGsGKStLl~~l~G~~~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~------- 99 (200)
T cd03217 32 MGPNGSGKSTLAKTIMGHPKYEVT-----EGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR------- 99 (200)
T ss_pred ECCCCCCHHHHHHHHhCCCcCCCC-----ccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh-------
Confidence 5999999999999999994 555 89999999987542 124999999999999888887760
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 100 --------------------------------~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L 147 (200)
T cd03217 100 --------------------------------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI 147 (200)
T ss_pred --------------------------------hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 012469999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHh-hcccEEEEcCCeEEEecCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYF-KFDDIVLLTEGKLVYAGPA 194 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~-~~D~v~lL~~G~iv~~G~~ 194 (551)
++++++|+|||+++|++. .+.. .+|++++|++|++++.|+.
T Consensus 148 ~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 148 NKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred HHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH
Confidence 999877899999999975 5665 6999999999999999844
No 265
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.9e-33 Score=273.70 Aligned_cols=171 Identities=26% Similarity=0.335 Sum_probs=141.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEEC--CE--eCCc---c------cceEEEEccCCCCCCCCCHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN--GK--PSSN---K------AYKFAYVRQEDLFFSQLTVRETLSLA 67 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~--g~--~~~~---~------~~~i~yv~Q~~~l~~~lTV~e~l~~~ 67 (551)
+||||||||||+++|+|..+|+ +|+|.++ |. ++.. . .++++|++|+..+++.+||.|++.+.
T Consensus 40 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 114 (224)
T TIGR02324 40 SGPSGAGKSTLLKSLYANYLPD-----SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP 114 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence 5999999999999999999887 7999998 42 3321 1 23599999999999999999999886
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 68 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
.... .....+..+++.++++.+||.+.. .+..+++||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 115 ~~~~---~~~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 187 (224)
T TIGR02324 115 LLER---GVPREAARARARELLARLNIPERL----WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187 (224)
T ss_pred HHHc---CCCHHHHHHHHHHHHHHcCCchhh----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 5432 122334456788899999996421 234577899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
+.+.|++++++|+|||+++|++ ..+...+|+++.+.
T Consensus 188 l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 188 VVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999987899999999995 46667899998763
No 266
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-33 Score=280.71 Aligned_cols=190 Identities=22% Similarity=0.291 Sum_probs=150.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCC---c------ccceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS---N------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~---~------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+|+||||||||+++|+|..+|.+.-..+|+|.++|.++. . .++.++|++|++.+++. ||+||+.+.....
T Consensus 48 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~ 126 (265)
T PRK14252 48 IGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR 126 (265)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc
Confidence 599999999999999999875210013899999997653 1 12459999999999986 9999998865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
. .......++++++.++.+++.+...+ ..+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 127 ~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 203 (265)
T PRK14252 127 G--VKRRSILEERVENALRNAALWDEVKD-RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL 203 (265)
T ss_pred C--CChHHHHHHHHHHHHHHcCCchhhhH-HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 1 11122334567888888887421111 12345778999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|+++++ +.|||+++|++ +++...+|++++|++|+++..|+.++
T Consensus 204 l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 204 ISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDT 246 (265)
T ss_pred HHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999976 68999999996 46778899999999999999987654
No 267
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.5e-33 Score=275.11 Aligned_cols=173 Identities=26% Similarity=0.360 Sum_probs=140.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|. +|+|.++|.++... ++.++|++|++.+++ .||+||+.+...
T Consensus 36 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------ 103 (221)
T cd03244 36 VGRTGSGKSSLLLALFRLVELS-----SGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------ 103 (221)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-----CCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------
Confidence 5999999999999999999887 89999999986431 345999999998776 599999864321
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccC-------ccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCAD-------SNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.. .+.+.+.++.+++.+..+ +. .+..++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 104 ~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~-~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l 178 (221)
T cd03244 104 YS----DEELWQALERVGLKEFVESLPGGLDTV-VEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178 (221)
T ss_pred CC----HHHHHHHHHHhCcHHHHHhcccccccc-cccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 11 123455566666643322 11 1346789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
.+.|+++++ +.|||+++|++. .+.. +|++++|++|++++.|+
T Consensus 179 ~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 179 QKTIREAFK-DCTVLTIAHRLD-TIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHhcC-CCEEEEEeCCHH-HHhh-CCEEEEEECCeEEecCC
Confidence 999999864 689999999975 4544 89999999999998875
No 268
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-34 Score=265.40 Aligned_cols=185 Identities=29% Similarity=0.444 Sum_probs=161.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|||||||||||.+++.+.+.+ +|+|.++|.++... .++++.+-|+.++-..+||+|-+.|+......+.
T Consensus 33 IGPNGAGKSTLLS~~sRL~~~d-----~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGR 107 (252)
T COG4604 33 IGPNGAGKSTLLSMMSRLLKKD-----SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGR 107 (252)
T ss_pred ECCCCccHHHHHHHHHHhcccc-----CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCC
Confidence 6999999999999999999887 89999999998654 2568899999999999999999999754322222
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
. ..|.+..+++.++.++|++..| ++..+||||||||.-||+.++++.+.++||||.++||-..+.++|+.|+++
T Consensus 108 l-t~eD~~~I~~aieyl~L~~l~d-----ryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 108 L-TKEDRRIINEAIEYLHLEDLSD-----RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred C-chHHHHHHHHHHHHhcccchHH-----HhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 3 3456678999999999976554 567799999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 156 a~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
+++ |+||+++.||.+ .+-...|+|+-|++|+++..|++++.
T Consensus 182 a~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 182 ADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred HHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHh
Confidence 954 999999999986 45556899999999999999999884
No 269
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.4e-33 Score=268.41 Aligned_cols=162 Identities=28% Similarity=0.368 Sum_probs=136.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... .+.++|++|++.+++.+||.||+.+....+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---- 102 (198)
T TIGR01189 32 TGPNGIGKTTLLRILAGLLRPD-----SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG---- 102 (198)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----
Confidence 5999999999999999999887 89999999876432 2459999999999999999999988654321
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
. + +++++++++.+||.+..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++
T Consensus 103 -~-~-~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 174 (198)
T TIGR01189 103 -G-A-QRTIEDALAAVGLTGFEDL-----PAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174 (198)
T ss_pred -C-c-HHHHHHHHHHcCCHHHhcC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 1 1 3457889999999765543 567899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEE
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVL 182 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~l 182 (551)
++|.|+|+++|++.. ..+|+++.
T Consensus 175 ~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 175 ARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred hCCCEEEEEEccccc---ccceEEee
Confidence 889999999999743 23466654
No 270
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.8e-33 Score=311.60 Aligned_cols=180 Identities=29% Similarity=0.472 Sum_probs=147.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|+ +|+|.+||.++... ++.++||+|++.+|+. |++||+.+... .
T Consensus 350 vG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~ 418 (544)
T TIGR01842 350 IGPSGSGKSTLARLIVGIWPPT-----SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----N 418 (544)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----C
Confidence 5999999999999999999987 89999999987642 3469999999999987 99999985321 1
Q ss_pred CCHHHHHH-----HHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDE-----YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.++++..+ ..++.++.+ .+-.||.+|+ ....||||||||++|||+|+++|++++|||||+|||+.++.++.+
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~ 495 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN 495 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHH
Confidence 23333221 123455555 1223566654 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|+++..+|+|+|+++|+++ ....+|++++|++|++++.|+.++
T Consensus 496 ~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 496 AIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred HHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHH
Confidence 99998767899999999975 346699999999999999998655
No 271
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=282.43 Aligned_cols=184 Identities=28% Similarity=0.430 Sum_probs=165.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCC--CCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQED--LFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l 70 (551)
+|+||||||||-.+|.+++++ +|+|.++|++++.. ++++-.|+||+ .+-|.+||.|-+.-+...
T Consensus 319 VGESGSGKsTlG~allrL~~s------~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v 392 (534)
T COG4172 319 VGESGSGKSTLGLALLRLIPS------QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV 392 (534)
T ss_pred EecCCCCcchHHHHHHhhcCc------CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh
Confidence 599999999999999999875 59999999987642 24588999998 689999999999998877
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
+.| ..+..++++++.+.|+++||+ ....++++++.|||||||++||||++.+|++++||||||.||-.-+.+|++
T Consensus 393 h~~-~ls~~eR~~rv~~aL~EVGLD----p~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~ 467 (534)
T COG4172 393 HEP-KLSAAERDQRVIEALEEVGLD----PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467 (534)
T ss_pred cCC-CCCHHHHHHHHHHHHHHcCCC----hhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH
Confidence 654 467889999999999999994 445678999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+|++|. +.|.+-++++||. ..+..+||+|++|++|++|+.|++++
T Consensus 468 LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~ 513 (534)
T COG4172 468 LLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEA 513 (534)
T ss_pred HHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHH
Confidence 999997 4688999999996 57899999999999999999999876
No 272
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9.2e-34 Score=323.34 Aligned_cols=175 Identities=30% Similarity=0.466 Sum_probs=146.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||.++... ++++|||+|++.+|+. |++||+.++. + .
T Consensus 511 vG~sGsGKSTLlklL~gl~~p~-----~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~ 579 (710)
T TIGR03796 511 VGGSGSGKSTIAKLVAGLYQPW-----SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-T 579 (710)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----C-C
Confidence 5999999999999999999987 89999999987643 3569999999999986 9999998752 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +.++++..|+. +..||.+|+ ...+||||||||++|||+|+++|++++||||||+||+.++.++
T Consensus 580 ~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i 654 (710)
T TIGR03796 580 IPDAD----LVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654 (710)
T ss_pred CCHHH----HHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHH
Confidence 23333 33444444432 234777775 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++ .++|+|+++|+++ ....+|+|++|++|+++..|+.++
T Consensus 655 ~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 655 DDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHH
Confidence 999986 4899999999974 345599999999999999998766
No 273
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-33 Score=264.96 Aligned_cols=139 Identities=36% Similarity=0.565 Sum_probs=125.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||+++|+|..+++ +|+|.++|+++... ++.++|++|++.+++.+|++||+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------ 100 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGLEEPD-----SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------ 100 (178)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------
Confidence 5999999999999999999887 89999999886432 24599999999999899999987542
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 101 ------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 101 ------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144 (178)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999
Q ss_pred HHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 154 QLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 154 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
+++++ |+|+|+++|++. .+...+|++++|++|+
T Consensus 145 ~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 145 SLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99987 899999999964 6777899999999885
No 274
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.2e-33 Score=312.62 Aligned_cols=177 Identities=32% Similarity=0.521 Sum_probs=151.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|+ +|+|.+||.++.+. ++.++||+|++.+|+. |++||+.++.. .
T Consensus 372 vG~sGsGKSTL~~ll~g~~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~ 440 (574)
T PRK11160 372 LGRTGCGKSTLLQLLTRAWDPQ-----QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----N 440 (574)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----c
Confidence 5999999999999999999987 89999999987653 2459999999999986 99999988631 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc------cCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSC------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~------~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.+ ++.+.+.++..++.+. .||.+|+ ....||||||||++|||+|+++|++++|||||++||+.++..+.
T Consensus 441 ~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~ 515 (574)
T PRK11160 441 AS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL 515 (574)
T ss_pred cC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 12 2346677777777543 4677775 47789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|+++. +++|+|+++|+++ .+ ..+|++++|++|++++.|+.++
T Consensus 516 ~~l~~~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 516 ELLAEHA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred HHHHHHc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHHH
Confidence 9999986 4899999999985 34 4589999999999999998655
No 275
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.8e-33 Score=262.61 Aligned_cols=135 Identities=34% Similarity=0.601 Sum_probs=122.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|. +|+|.++|.++... +++++|++|++.+++. ||+||+
T Consensus 34 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l----------- 96 (173)
T cd03246 34 IGPSGSGKSTLARLILGLLRPT-----SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI----------- 96 (173)
T ss_pred ECCCCCCHHHHHHHHHhccCCC-----CCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC-----------
Confidence 5999999999999999999887 89999999887532 3459999999988875 999986
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 97 ----------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 97 ----------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL 142 (173)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
+++|+|+|+++|++. .+ ..+|++++|++|++
T Consensus 143 ~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 143 KAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 878999999999975 55 56999999999974
No 276
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.7e-33 Score=319.35 Aligned_cols=177 Identities=31% Similarity=0.436 Sum_probs=147.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||.++.+. ++++|||+|++.+|+. |++||+.++... .
T Consensus 506 vG~SGsGKSTLlklL~gl~~p~-----~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~----~ 575 (708)
T TIGR01193 506 VGMSGSGKSTLAKLLVGFFQAR-----SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE----N 575 (708)
T ss_pred ECCCCCCHHHHHHHHhccCCCC-----CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC----C
Confidence 5999999999999999999987 89999999987543 3569999999999987 999999986321 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+.++ +.+.++..|+ ....||.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+...+
T Consensus 576 ~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i 650 (708)
T TIGR01193 576 VSQDE----IWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650 (708)
T ss_pred CCHHH----HHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence 23333 3333443333 2345788876 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++ +|+|+|+++|+++ ....+|+|++|++|++++.|+.++
T Consensus 651 ~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 651 VNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 9999985 4799999999975 446799999999999999998765
No 277
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-32 Score=294.62 Aligned_cols=174 Identities=23% Similarity=0.319 Sum_probs=147.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|||||||||||++|+|+.+|+ +|+|.++|.+. ++.+...+.+.+|++||+.+..... .....+
T Consensus 56 iGpNGSGKSTLLkiLaGLl~P~-----sGeI~I~G~~~--------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e 119 (549)
T PRK13545 56 IGLNGSGKSTLSNLIAGVTMPN-----KGTVDIKGSAA--------LIAISSGLNGQLTGIENIELKGLMM---GLTKEK 119 (549)
T ss_pred EcCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEee--------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHH
Confidence 5999999999999999999887 89999999752 2233445677799999998755432 123445
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
..++++++++.+||.+..+ ..++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+
T Consensus 120 ~~e~i~elLe~lgL~~~ld-----~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~ 194 (549)
T PRK13545 120 IKEIIPEIIEFADIGKFIY-----QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGK 194 (549)
T ss_pred HHHHHHHHHHHcCChhHhh-----CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 5567888999999965554 35678999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|||+++|++. .+...||++++|++|++++.|++++
T Consensus 195 TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~e 229 (549)
T PRK13545 195 TIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKE 229 (549)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999974 6778899999999999999998766
No 278
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.8e-33 Score=268.40 Aligned_cols=163 Identities=25% Similarity=0.361 Sum_probs=134.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|+.++. +|+|.++|.++... ++.++|++|++.+++. ||+||+.+.. .
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~ 107 (207)
T cd03369 40 VGRTGAGKSTLILALFRFLEAE-----EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------E 107 (207)
T ss_pred ECCCCCCHHHHHHHHhcccCCC-----CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC------C
Confidence 5999999999999999999887 89999999986432 2459999999988875 9999996531 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
...+ .+.+.++ + +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 108 ~~~~----~~~~~l~---~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 108 YSDE----EIYGALR---V---------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171 (207)
T ss_pred CCHH----HHHHHhh---c---------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 1111 2333333 2 2356789999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCC
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA 194 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 194 (551)
. +|+|+|+++|++. .+.. +|++++|++|+++..|++
T Consensus 172 ~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 172 F-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred c-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 5 4899999999975 4554 899999999999988764
No 279
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=8.9e-32 Score=303.00 Aligned_cols=181 Identities=33% Similarity=0.505 Sum_probs=157.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||+++... ++.++|++|+..+++.+|+.||+.+.....
T Consensus 40 ~G~nGsGKSTLl~~i~Gl~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 114 (648)
T PRK10535 40 VGASGSGKSTLMNILGCLDKPT-----SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA 114 (648)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence 5999999999999999999887 89999999987542 235999999999999999999998865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
.....+.++++.++++.+||.+..|+ .++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.
T Consensus 115 ---~~~~~~~~~~~~~~l~~lgl~~~~~~-----~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l 186 (648)
T PRK10535 115 ---GLERKQRLLRAQELLQRLGLEDRVEY-----QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186 (648)
T ss_pred ---CCCHHHHHHHHHHHHHHCCChhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 12344556778999999999765443 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|++++++|+|+|+++|++. .+ ..||++++|++|++++.|++++
T Consensus 187 l~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 187 LHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCccc
Confidence 9999878999999999975 44 4699999999999999998876
No 280
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=8.7e-33 Score=276.72 Aligned_cols=168 Identities=30% Similarity=0.474 Sum_probs=141.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCC--CHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL--TVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~l--TV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|. ..++|++|++.+++.+ |+.+++.+. + ...
T Consensus 36 ~G~NGsGKSTLl~~i~Gl~~p~-----~G~i~~~~~------~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~- 97 (251)
T PRK09544 36 LGPNGAGKSTLVRVVLGLVAPD-----EGVIKRNGK------LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK- 97 (251)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCc------cCEEEeccccccccccChhHHHHHhcc-----c-ccc-
Confidence 5999999999999999999887 899999872 3599999998877764 777776432 1 111
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
++++.++++.+||.+..| ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 98 ---~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 169 (251)
T PRK09544 98 ---KEDILPALKRVQAGHLID-----APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE 169 (251)
T ss_pred ---HHHHHHHHHHcCChHHHh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 245678999999976554 356789999999999999999999999999999999999999999999999865
Q ss_pred -CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 159 -GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 159 -g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|.|||+++|++. .+...+|++++|++ +++..|++++
T Consensus 170 ~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~ 206 (251)
T PRK09544 170 LDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEV 206 (251)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHH
Confidence 899999999974 67788999999965 7888887654
No 281
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-32 Score=268.07 Aligned_cols=165 Identities=30% Similarity=0.380 Sum_probs=138.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc--ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~--~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||+++|+|..+++ +|+|.++|.+... .++.++|++|++.+++.+||+||+.+....+. .
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~-- 103 (207)
T PRK13539 34 TGPNGSGKTTLLRLIAGLLPPA-----AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G-- 103 (207)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C--
Confidence 5999999999999999999887 8999999987542 23458999999988899999999987654321 1
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
.++.++++++.+||.+..+ ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 104 --~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 104 --EELDIAAALEAVGLAPLAH-----LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred --cHHHHHHHHHHcCCHHHHc-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 1234788999999965443 456789999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
|+|||+++|++. ++.. |+++.+..
T Consensus 177 ~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 177 GGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred CCEEEEEeCCch-hhcc--CcEEeecC
Confidence 999999999974 4544 88877743
No 282
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.6e-33 Score=312.00 Aligned_cols=177 Identities=28% Similarity=0.461 Sum_probs=147.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+|+|+|+.+|+ +|+|.+||.++.+. ++.++||+|++.+|+. |++||+.++. + .
T Consensus 367 vG~sGsGKSTLl~lL~gl~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~ 435 (588)
T PRK13657 367 VGPTGAGKSTLINLLQRVFDPQ-----SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-D 435 (588)
T ss_pred ECCCCCCHHHHHHHHhcCcCCC-----CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-C
Confidence 5999999999999999999987 89999999988653 2569999999999986 9999998752 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +.+.++..|+ .+..||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.++..+
T Consensus 436 ~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i 510 (588)
T PRK13657 436 ATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV 510 (588)
T ss_pred CCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 23333 3334444443 2334677765 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++. +++|+|++||+++ ....+|++++|++|+++..|+.++
T Consensus 511 ~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 511 KAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999875 4799999999974 456799999999999999888654
No 283
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=295.65 Aligned_cols=177 Identities=33% Similarity=0.507 Sum_probs=151.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc-----ceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-----YKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~-----~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||++.|+|-.+|+ +|+|.+||.++...+ ..+++++|..++|.+ |+++||.++.. +
T Consensus 370 lG~SGsGKSTllqLl~~~~~~~-----~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~-----~ 438 (573)
T COG4987 370 LGRSGSGKSTLLQLLAGAWDPQ-----QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP-----D 438 (573)
T ss_pred ECCCCCCHHHHHHHHHhccCCC-----CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC-----C
Confidence 6999999999999999999988 899999999876532 359999999999997 99999998642 2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc-------cCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+++ .+.++++.+||++. .||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+..++
T Consensus 439 AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~v 513 (573)
T COG4987 439 ASDE----ELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513 (573)
T ss_pred CCHH----HHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHH
Confidence 3333 35566777777543 3455654 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.|.+-++ |+|+|++||+.. . .+.||+|++|++|++++.|..++
T Consensus 514 L~ll~~~~~-~kTll~vTHrL~-~-le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 514 LALLFEHAE-GKTLLMVTHRLR-G-LERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHhc-CCeEEEEecccc-c-HhhcCEEEEEECCeeeecCCHHh
Confidence 999998775 899999999975 3 45689999999999999999877
No 284
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.4e-33 Score=304.11 Aligned_cols=174 Identities=22% Similarity=0.279 Sum_probs=146.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCC--C-C-----CCCHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLF--F-S-----QLTVRETLSLA 67 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l--~-~-----~lTV~e~l~~~ 67 (551)
+||||||||||+|+|+|..+|+ +|+|.++|.++... ++.++|++|++.. + + .+||+|++.+.
T Consensus 35 iG~nGsGKSTLl~~l~G~~~p~-----~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (490)
T PRK10938 35 VGANGSGKSALARALAGELPLL-----SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE 109 (490)
T ss_pred ECCCCCCHHHHHHHHhccCCCC-----CceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence 6999999999999999999887 89999999765321 2348999998642 1 1 46888876531
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 68 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
.+.+++++++++.+||.+..| +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 110 -----------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 173 (490)
T PRK10938 110 -----------VKDPARCEQLAQQFGITALLD-----RRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173 (490)
T ss_pred -----------hhHHHHHHHHHHHcCCHhhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 123456889999999965544 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.+.|++++++|.|||+++|++. .+...||++++|++|+++..|++++
T Consensus 174 l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 174 LAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred HHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999888999999999974 6778899999999999999987654
No 285
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.1e-33 Score=318.13 Aligned_cols=177 Identities=28% Similarity=0.495 Sum_probs=148.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||.++.+. ++.++||+|++.+|+. |++||+.++.. .
T Consensus 497 vG~sGsGKSTLlklL~gl~~p~-----~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~ 565 (694)
T TIGR03375 497 IGRIGSGKSTLLKLLLGLYQPT-----EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----Y 565 (694)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----C
Confidence 5999999999999999999987 89999999988653 3469999999999986 99999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +.+.++..|+ .+-.||.+|+ ....||||||||++|||+|+++|++++||||||+||+.++.++
T Consensus 566 ~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i 640 (694)
T TIGR03375 566 ADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERF 640 (694)
T ss_pred CCHHH----HHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 23333 3333444333 2345788876 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++.+ ++|+|+++|+++ ....+|+|++|++|++++.|+.++
T Consensus 641 ~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 641 KDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHH
Confidence 999999864 799999999975 346799999999999999998765
No 286
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.6e-33 Score=280.64 Aligned_cols=175 Identities=25% Similarity=0.338 Sum_probs=144.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|+.+ . +|+|.++|.++... +++++|++|++.+|+. ||+||+.....
T Consensus 36 vG~nGsGKSTLl~~L~gl~~-~-----~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------ 102 (275)
T cd03289 36 LGRTGSGKSTLLSAFLRLLN-T-----EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------ 102 (275)
T ss_pred ECCCCCCHHHHHHHHhhhcC-C-----CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------
Confidence 69999999999999999986 4 69999999987532 3469999999999985 99999964211
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCc-------cccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADS-------NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
... +.+.+.++.+||.+..+. .+++ ....||||||||++|||+|+.+|++++|||||+|||+.+...+
T Consensus 103 ~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l 177 (275)
T cd03289 103 WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177 (275)
T ss_pred CCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence 122 345677788888643332 2222 3456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++. +++|||+++|++. .+.. +||+++|++|++++.|++++
T Consensus 178 ~~~l~~~~-~~~tii~isH~~~-~i~~-~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 178 RKTLKQAF-ADCTVILSEHRIE-AMLE-CQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred HHHHHHhc-CCCEEEEEECCHH-HHHh-CCEEEEecCCeEeecCCHHH
Confidence 99999875 4899999999974 5554 99999999999999999876
No 287
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-33 Score=301.64 Aligned_cols=179 Identities=33% Similarity=0.503 Sum_probs=153.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||+||||+.++|-.++.|+ +|+|.+||+|+.+. +++||+|.||+.+|.. ||+|||.|+.. .
T Consensus 500 VGPSGsGKSTiasLL~rfY~Pt-----sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~ 568 (716)
T KOG0058|consen 500 VGPSGSGKSTIASLLLRFYDPT-----SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----N 568 (716)
T ss_pred ECCCCCCHHHHHHHHHHhcCCC-----CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----C
Confidence 6999999999999999999998 89999999998764 3569999999999997 99999999865 2
Q ss_pred CCHHHHHHHH-----HHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.+.++..+.+ .+.+ .++.+..||.+|+ +..+||||||||++|||||++||+||||||.||+||+.+...+-+
T Consensus 569 ~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~ 645 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645 (716)
T ss_pred CCHHHHHHHHHHhChHHHH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH
Confidence 3444443332 2233 3567788999986 567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|.++.+ ++|||++.|..+ .+ +.+|+|+++++|++++.|+-++
T Consensus 646 aL~~~~~-~rTVlvIAHRLS-TV-~~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 646 ALDRLMQ-GRTVLVIAHRLS-TV-RHADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HHHHhhc-CCeEEEEehhhh-Hh-hhccEEEEEcCCeEEecccHHH
Confidence 9998875 599999999864 44 5589999999999999997555
No 288
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=7.9e-33 Score=262.84 Aligned_cols=141 Identities=33% Similarity=0.599 Sum_probs=125.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|..++. +|+|.++|.++... ++.++|++|++.+++ .|++||+
T Consensus 34 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------ 95 (178)
T cd03247 34 LGRSGSGKSTLLQLLTGDLKPQ-----QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------------ 95 (178)
T ss_pred ECCCCCCHHHHHHHHhccCCCC-----CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------------
Confidence 5999999999999999999887 89999999876431 345999999998886 6999986
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
++.||||||||++|||+|+.+|++++|||||+|||+.++..+++.|++++
T Consensus 96 ------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 96 ------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred ------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 34699999999999999999999999999999999999999999999996
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
++.|||+++|++. .+. .+|++++|++|++++.|
T Consensus 146 -~~~tii~~sh~~~-~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 146 -KDKTLIWITHHLT-GIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred -CCCEEEEEecCHH-HHH-hCCEEEEEECCEEEecC
Confidence 5899999999975 454 59999999999998754
No 289
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7.5e-33 Score=308.45 Aligned_cols=178 Identities=26% Similarity=0.402 Sum_probs=149.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+|+|+|+.+|+ +|+|.+||.++++. +++++||+|++.+|+. |++||+.++.. +.
T Consensus 364 vG~sGsGKSTLl~lL~gl~~~~-----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~ 433 (571)
T TIGR02203 364 VGRSGSGKSTLVNLIPRFYEPD-----SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQ 433 (571)
T ss_pred ECCCCCCHHHHHHHHHhccCCC-----CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CC
Confidence 5999999999999999999987 89999999987643 2459999999999987 99999987631 12
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++ +.++++++.+|+. +-.||.+|+. .+.||||||||++|||+++++|++++||||||+||+.++..+
T Consensus 434 ~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i 508 (571)
T TIGR02203 434 ADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV 508 (571)
T ss_pred CCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 223 3345555555543 3357778764 678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.|++++ +++|+|++||+++ ....||+|++|++|+++..|+.++
T Consensus 509 ~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 509 QAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999885 4799999999974 567799999999999999888665
No 290
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=285.44 Aligned_cols=182 Identities=30% Similarity=0.428 Sum_probs=161.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+|.||||||||+++|.|.++|+ +|+|.++|+++.-. +..||+|.|+..+++++||.||+..+..-....
T Consensus 36 LGENGAGKSTLm~iL~G~~~P~-----~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~ 110 (501)
T COG3845 36 LGENGAGKSTLMKILFGLYQPD-----SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG 110 (501)
T ss_pred eccCCCCHHHHHHHHhCcccCC-----cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence 6999999999999999999998 89999999987543 235999999999999999999999987543223
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.....+.+++++++.+.+||.=.. +.++..||-||||||.|-++|.++|++|+|||||+-|-|...+++++.|++
T Consensus 111 ~~~~~~~~~~i~~l~~~yGl~vdp-----~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~ 185 (501)
T COG3845 111 LIDRRQARARIKELSERYGLPVDP-----DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR 185 (501)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCc-----cceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 456677788999999999995433 445668999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
++++|+|||++||-. .++.+.+||+.+|++|+++..-+
T Consensus 186 l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 186 LAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999996 58999999999999999986665
No 291
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.1e-33 Score=317.40 Aligned_cols=175 Identities=30% Similarity=0.429 Sum_probs=144.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|+ +|+|.+||+++++. +++++||+|++.+|+. |++||+.++.. .
T Consensus 513 vG~SGsGKSTLl~lL~gl~~p~-----~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~ 581 (711)
T TIGR00958 513 VGPSGSGKSTVAALLQNLYQPT-----GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----D 581 (711)
T ss_pred ECCCCCCHHHHHHHHHhccCCC-----CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC-----C
Confidence 5999999999999999999987 89999999998653 3569999999999986 99999988631 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++ +.+.++++..++. +..||.+|+ ...+||||||||++|||+|+++|+|++||||||+||+.+...+
T Consensus 582 ~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i 656 (711)
T TIGR00958 582 TPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL 656 (711)
T ss_pred CCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHH
Confidence 222 2344555555543 235777775 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+ .. ..+++|+|+++|+++ ....+|+|++|++|++++.|+.++
T Consensus 657 ~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 657 QE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHH
Confidence 88 22 235899999999974 345699999999999999998766
No 292
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-33 Score=293.72 Aligned_cols=178 Identities=26% Similarity=0.417 Sum_probs=148.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+|||||||++|+|.+... . +|+|.+||+++++. ++.|||||||..+|.+ ||.+|+.++.. .
T Consensus 384 vG~nGsGKSTilr~LlrF~d-~-----sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----s 451 (591)
T KOG0057|consen 384 VGSNGSGKSTILRLLLRFFD-Y-----SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----S 451 (591)
T ss_pred ECCCCCCHHHHHHHHHHHhc-c-----CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----C
Confidence 59999999999999999987 4 79999999998653 3459999999999997 99999999742 2
Q ss_pred CCHHHHHHHH-----HHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.+.++..+.+ .+.+. .+.+..+|.+|+ +...|||||||||+|||+++.||+|+++|||||.||+.+..++++
T Consensus 452 as~eeV~e~~k~a~~hd~i~--~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~ 528 (591)
T KOG0057|consen 452 ASDEEVVEACKRAGLHDVIS--RLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILD 528 (591)
T ss_pred cCHHHHHHHHHHcCcHHHHH--hccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHH
Confidence 3444433322 22333 234556788886 577899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.. ...|+|+|++.|+. .....||+|++|++|++...|+.++
T Consensus 529 ~i~~-~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~e 571 (591)
T KOG0057|consen 529 MIMD-VMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSE 571 (591)
T ss_pred HHHH-hcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHH
Confidence 9999 44689999999985 4566799999999999999999876
No 293
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-32 Score=263.40 Aligned_cols=160 Identities=22% Similarity=0.278 Sum_probs=134.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|+|+.+|+ +|+|.++|+++... ++.++|++|+..+++.+||+||+.+.....
T Consensus 33 ~G~nGsGKSTLl~~i~G~~~~~-----~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~----- 102 (200)
T PRK13540 33 KGSNGAGKTTLLKLIAGLLNPE-----KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS----- 102 (200)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----
Confidence 5999999999999999999887 89999999876532 245999999998889999999998864321
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
.. +..++++++.+++.+..+ ..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++
T Consensus 103 -~~--~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~ 174 (200)
T PRK13540 103 -PG--AVGITELCRLFSLEHLID-----YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174 (200)
T ss_pred -cc--hHHHHHHHHHcCCchhhh-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 11 236788999999965444 3456899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccE
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDI 180 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v 180 (551)
++|.|||+++|++. ....+|..
T Consensus 175 ~~~~tiii~sh~~~--~~~~~d~~ 196 (200)
T PRK13540 175 AKGGAVLLTSHQDL--PLNKADYE 196 (200)
T ss_pred HcCCEEEEEeCCch--hccccchh
Confidence 78999999999964 33446653
No 294
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.9e-33 Score=313.95 Aligned_cols=179 Identities=28% Similarity=0.491 Sum_probs=146.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+|+|+|..+|+ +|+|.+||.++++. ++.++||+|++.+|+. |++||+.++. + .
T Consensus 489 vG~sGsGKSTL~~ll~g~~~p~-----~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~ 557 (694)
T TIGR01846 489 VGPSGSGKSTLTKLLQRLYTPQ-----HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----P-G 557 (694)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----C-C
Confidence 5999999999999999999987 89999999987653 3459999999999986 9999998742 1 1
Q ss_pred CCHHHHHHH-----HHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDEY-----VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.+.++..+. +++.++.+ .+..||.+++ ...+||||||||++|||+|+++|++++|||||++||+.++.++.+
T Consensus 558 ~~~~~i~~a~~~~~l~~~i~~l--p~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~ 634 (694)
T TIGR01846 558 APFEHVIHAAKLAGAHDFISEL--PQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhC--cCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH
Confidence 233332221 12233333 2234777775 467899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|+++. +++|+|+++|+++ .+ ..+|++++|++|++++.|+.++
T Consensus 635 ~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 635 NMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence 999985 5899999999985 34 4599999999999999998665
No 295
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.3e-32 Score=266.01 Aligned_cols=168 Identities=23% Similarity=0.429 Sum_probs=133.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+|||||||||||++|+|..+|+ +|+|.++|+++.. .++.++|++|++.++ ..|++||+.+...
T Consensus 33 ~G~nGsGKSTLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~-- 104 (218)
T cd03290 33 VGQVGCGKSSLLLAILGEMQTL-----EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP-- 104 (218)
T ss_pred ECCCCCCHHHHHHHHhccCCCC-----CCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc--
Confidence 5999999999999999999887 8999999987532 124599999999887 4699999987431
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccC-------ccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCAD-------SNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQ 144 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~ 144 (551)
... +...++++.++|.+..+ +.. +..+..||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 105 ----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 175 (218)
T cd03290 105 ----FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175 (218)
T ss_pred ----CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHH
Confidence 111 12334556666543211 112 34578999999999999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 145 AEKVME--ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 145 ~~~i~~--~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
+..+++ +++.+.++|.|+|+++|++. .+. .+|++++|++|+
T Consensus 176 ~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQ-YLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCChH-HHh-hCCEEEEecCCC
Confidence 999998 67777677899999999985 454 599999999884
No 296
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-32 Score=305.67 Aligned_cols=177 Identities=27% Similarity=0.463 Sum_probs=146.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|+ +|+|.+||+++... ++.++||+|++.+|+. |++||+.++. + .
T Consensus 347 vG~sGsGKSTLl~ll~g~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~ 415 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFDVS-----EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----P-D 415 (569)
T ss_pred ECCCCCCHHHHHHHHhcccCCC-----CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----C-C
Confidence 5999999999999999999987 89999999987543 3459999999999986 9999998752 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +++.++..++ .+..||.+|+ ....||||||||++|||+|+++|++++|||||++||+.++..+
T Consensus 416 ~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i 490 (569)
T PRK10789 416 ATQQE----IEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490 (569)
T ss_pred CCHHH----HHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence 22332 3334444443 3345677765 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++. +|+|+|+++|+++ ....+|++++|++|+++..|+.++
T Consensus 491 ~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 491 LHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHH
Confidence 99999985 5899999999974 345699999999999999998654
No 297
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.98 E-value=2.5e-32 Score=264.96 Aligned_cols=160 Identities=31% Similarity=0.456 Sum_probs=127.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|..+|+ +|+|.++| +++|++|++.+++ .|++||+.+.... ..+
T Consensus 37 ~G~nG~GKSTLl~~i~G~~~~~-----~G~i~~~g--------~i~~~~q~~~l~~-~t~~enl~~~~~~------~~~- 95 (204)
T cd03250 37 VGPVGSGKSSLLSALLGELEKL-----SGSVSVPG--------SIAYVSQEPWIQN-GTIRENILFGKPF------DEE- 95 (204)
T ss_pred ECCCCCCHHHHHHHHhCcCCCC-----CCeEEEcC--------EEEEEecCchhcc-CcHHHHhccCCCc------CHH-
Confidence 5999999999999999999887 89999998 6999999998885 6999999875321 111
Q ss_pred HHHHHHHHHHHcCCCcc-------cCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH-HH
Q 008843 81 RDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-AL 152 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~-~L 152 (551)
...+.++.+++.+. .++.. +...++||||||||++||++|+.+|++++|||||+|||+.++..+.+ ++
T Consensus 96 ---~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll 171 (204)
T cd03250 96 ---RYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCI 171 (204)
T ss_pred ---HHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 12223333333211 11222 34578899999999999999999999999999999999999999998 56
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
++++++|+|||+++|++. .+.. +|++++|++|+
T Consensus 172 ~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 172 LGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 777667899999999975 5555 99999999985
No 298
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.98 E-value=1.9e-32 Score=275.34 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=138.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+++|+|+.++. +|+|.++|+++... ++.++|++|++.+++. |++||+.... .
T Consensus 53 ~G~nGsGKSTLl~~l~Gl~~~~-----~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~ 120 (257)
T cd03288 53 CGRTGSGKSSLSLAFFRMVDIF-----DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC------K 120 (257)
T ss_pred ECCCCCCHHHHHHHHHcccCCC-----CCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC------C
Confidence 5999999999999999999887 89999999987542 2459999999988874 9999975321 0
Q ss_pred CCHHHHHH-----HHHHHHHHc--CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDE-----YVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.......+ .+++.++.+ |++ +.+ +...+.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~~~l~----~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l 195 (257)
T cd03288 121 CTDDRLWEALEIAQLKNMVKSLPGGLD----AVV-TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195 (257)
T ss_pred CCHHHHHHHHHHhCcHHHHhhcccccC----cEe-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 11111111 122333433 342 222 235679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++. ++.|||+++|++. .+.. +|++++|++|+++..|++++
T Consensus 196 ~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~~ 240 (257)
T cd03288 196 QKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPEN 240 (257)
T ss_pred HHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHHH
Confidence 99999975 4899999999986 4554 99999999999999887654
No 299
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=7.1e-33 Score=251.01 Aligned_cols=173 Identities=25% Similarity=0.396 Sum_probs=150.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
.||||||||||+|+++.+.+|+ +|++++.|++++.. +.+++|+.|.+.+|+. ||++|+.|...+|..+.
T Consensus 35 tGPSG~GKStllk~va~Lisp~-----~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~ 108 (223)
T COG4619 35 TGPSGCGKSTLLKIVASLISPT-----SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP 108 (223)
T ss_pred eCCCCccHHHHHHHHHhccCCC-----CceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhccCC
Confidence 4999999999999999999998 89999999998764 3459999999999997 99999999877664221
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
..+++.+.|+++++.+ .+.++.+.+||||||||++|+|.|..-|+||+||||||.||+.+++.|-++|.++
T Consensus 109 -----dr~aa~~llar~~l~~----~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 109 -----DRAAALDLLARFALPD----SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred -----ChHHHHHHHHHcCCch----hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence 2355678899999953 4456678899999999999999999999999999999999999999999999988
Q ss_pred H-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEE
Q 008843 156 A-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV 189 (551)
Q Consensus 156 a-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 189 (551)
. ++.++++-+||++.. ....+|+++-+..|++-
T Consensus 180 v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~~ 213 (223)
T COG4619 180 VREQNVAVLWITHDKDQ-AIRHADKVITLQPGHAG 213 (223)
T ss_pred hhhhceEEEEEecChHH-HhhhhheEEEeccCccc
Confidence 6 678999999999864 44568999999998764
No 300
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.98 E-value=8.7e-32 Score=294.59 Aligned_cols=185 Identities=18% Similarity=0.276 Sum_probs=150.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCC---CCCCCCCHHHHHHHHH---
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQED---LFFSQLTVRETLSLAA--- 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~---~l~~~lTV~e~l~~~~--- 68 (551)
+||||||||||+|+|+|..+|+ +|+|.++|+++... ++.++|++|+. .+++.+|+.+|..+..
T Consensus 280 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
T PRK10982 280 AGLVGAKRTDIVETLFGIREKS-----AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 354 (491)
T ss_pred ecCCCCCHHHHHHHHcCCCcCC-----ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence 6999999999999999999887 89999999887542 23489999985 4788898887743221
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
...........+.++.++++++.+++. +.. +..+++|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~ 429 (491)
T PRK10982 355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGH-----RTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE 429 (491)
T ss_pred hcccccccCcHHHHHHHHHHHHhcCccCCCc-----ccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHH
Confidence 011001112233456788899999994 233 45677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++.|++++++|+|||++||++. ++..+||++++|++|+++..+++++
T Consensus 430 ~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 430 IYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999988999999999974 6788999999999999998776654
No 301
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.98 E-value=2.6e-32 Score=259.78 Aligned_cols=144 Identities=41% Similarity=0.626 Sum_probs=123.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|+ +|+|.++|+++... ...++|++|
T Consensus 31 ~G~nGsGKStLl~~i~G~~~~~-----~G~v~~~g~~~~~~~~~~~~~~i~~~~q------------------------- 80 (180)
T cd03214 31 LGPNGAGKSTLLKTLAGLLKPS-----SGEILLDGKDLASLSPKELARKIAYVPQ------------------------- 80 (180)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCcCCHHHHHHHHhHHHH-------------------------
Confidence 5999999999999999999887 89999999987532 124677777
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
+++.+||.+..+ ..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 81 ------------~l~~~gl~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~ 143 (180)
T cd03214 81 ------------ALELLGLAHLAD-----RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred ------------HHHHcCCHhHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 566677754333 346789999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 156 AQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 156 a~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
+++ |.|+|+++|++. .+...+|++++|++|++++.|
T Consensus 144 ~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 144 ARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 876 899999999975 667889999999999998653
No 302
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.98 E-value=1.7e-32 Score=306.01 Aligned_cols=177 Identities=27% Similarity=0.431 Sum_probs=147.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|. +|+|.+||.++++. ++.++|+||++.+|+. |++||+.++. + .
T Consensus 372 vG~sGsGKSTLlklL~gl~~p~-----~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~ 440 (576)
T TIGR02204 372 VGPSGAGKSTLFQLLLRFYDPQ-----SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR----P-D 440 (576)
T ss_pred ECCCCCCHHHHHHHHHhccCCC-----CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC----C-C
Confidence 5999999999999999999987 89999999987643 2459999999999986 9999998752 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++ +.+++.++..|+. +..|+.+|+ ....||||||||++|||+++++|++++||||||+||+.+++.+
T Consensus 441 ~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i 515 (576)
T TIGR02204 441 ATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV 515 (576)
T ss_pred CCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHH
Confidence 222 2344555555543 234667765 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.|+++. +++|+|++||+++ ....+|+++.|++|+++..|+.++
T Consensus 516 ~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 516 QQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHH
Confidence 99999985 4899999999974 446699999999999999998654
No 303
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.98 E-value=2.8e-32 Score=304.21 Aligned_cols=179 Identities=28% Similarity=0.436 Sum_probs=144.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|+ +|+|.+||.++.+. ++.++||+|++.+++ .|++||+.++.. .
T Consensus 367 vG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~ 435 (585)
T TIGR01192 367 VGPTGAGKTTLINLLQRVYDPT-----VGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGRE-----G 435 (585)
T ss_pred ECCCCCCHHHHHHHHccCCCCC-----CCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCC-----C
Confidence 5999999999999999999987 89999999987542 346999999999887 499999987531 1
Q ss_pred CCHHHHHHHHH-----HHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDEYVN-----SLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~~v~-----~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.++++..+..+ +.+.. +.+..||.+|+ ...+||||||||++|||+|+++|++++|||||+|||+.++..+.+
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~--l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~ 512 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILK--RSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKN 512 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHh--ccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 23333322221 22222 22233566665 477899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|+++. +++|+|+++|+++ .+ ..+|++++|++|+++..|+.++
T Consensus 513 ~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 513 AIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 999885 5899999999974 44 5599999999999999887654
No 304
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.98 E-value=9.6e-32 Score=262.76 Aligned_cols=177 Identities=23% Similarity=0.240 Sum_probs=141.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEE-ECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-VNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~-i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+|+|+|..+|+ +|+|. ++|.... +.|+..+++.+|++||+.+...... ....
T Consensus 19 ~G~NGsGKSTLlk~i~Gl~~~~-----sG~i~~~~~~~~~--------~~~~~~l~~~ltv~enl~~~~~~~~---~~~~ 82 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCGLDAPD-----EGDFIGLRGDALP--------LGANSFILPGLTGEENARMMASLYG---LDGD 82 (213)
T ss_pred ECCCCCCHHHHHHHHhCCccCC-----CCCEEEecCceec--------cccccccCCcCcHHHHHHHHHHHcC---CCHH
Confidence 5999999999999999999887 79986 7775431 2355678899999999998765431 2222
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
+. .+.+.+.++|.+..|+ .++.||||||||++||++|+.+|++++|||||+++|+.++..+.+.|.+..+ +
T Consensus 83 ~~---~~~~~~~~~l~~~~~~-----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~ 153 (213)
T PRK15177 83 EF---SHFCYQLTQLEQCYTD-----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-Q 153 (213)
T ss_pred HH---HHHHHHHhChhHHhhc-----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-C
Confidence 22 2334455677554443 5678999999999999999999999999999999999999999998865443 4
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhh
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSR 204 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~ 204 (551)
+|+|+++|++. .+...+|++++|++|++++.|+.++ ...+++.
T Consensus 154 ~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~-~~~~~~~ 196 (213)
T PRK15177 154 KGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQ-ATALFEQ 196 (213)
T ss_pred CcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHH-HHHHHHH
Confidence 68999999975 6777899999999999999998877 6666544
No 305
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.97 E-value=2.1e-32 Score=284.77 Aligned_cols=181 Identities=29% Similarity=0.478 Sum_probs=155.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||.|+|.|..+|. +|.|.+||.+++.. .++|||+||+-.+|+. ||.||+.-..+ .
T Consensus 368 IGPSgSGKSTLaR~lvG~w~p~-----~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~-----~ 436 (580)
T COG4618 368 IGPSGSGKSTLARLLVGIWPPT-----SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGE-----E 436 (580)
T ss_pred ECCCCccHHHHHHHHHcccccC-----CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccc-----c
Confidence 6999999999999999999987 89999999988654 3569999999999998 99999864321 1
Q ss_pred CCHHH-----HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEE-----RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~-----~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.+.+. +...+.+++ +.+.+-.||.+|+ ....||||||||+++||||-.||.+++||||-|+||..-...+.+
T Consensus 437 ~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~ 513 (580)
T COG4618 437 ADPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA 513 (580)
T ss_pred CCHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH
Confidence 22221 122344544 4567788999997 477899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
.|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+++
T Consensus 514 Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 514 AILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999985 6777899999999999999998883
No 306
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.3e-31 Score=258.30 Aligned_cols=160 Identities=23% Similarity=0.238 Sum_probs=133.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+++|+|..+|+ +|+|.++|.++... .+.++|++|+..+++.+||+||+.+......
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~------- 99 (195)
T PRK13541 32 KGANGCGKSSLLRMIAGIMQPS-----SGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN------- 99 (195)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc-------
Confidence 5999999999999999999887 89999999887543 2458999999888888999999988653320
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
..+.++++++.+++.+..+ +.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++..++|
T Consensus 100 -~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~ 173 (195)
T PRK13541 100 -SAETLYAAIHYFKLHDLLD-----EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG 173 (195)
T ss_pred -cHHHHHHHHHHcCCHhhhc-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 1345778899999965444 3567899999999999999999999999999999999999999999998877788
Q ss_pred CEEEEEecCCchhHHhhcccE
Q 008843 160 HTVICSIHQPRGSVYFKFDDI 180 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v 180 (551)
+|+|+++|++. .+.. +|-+
T Consensus 174 ~tiii~sh~~~-~i~~-~~~~ 192 (195)
T PRK13541 174 GIVLLSSHLES-SIKS-AQIL 192 (195)
T ss_pred CEEEEEeCCcc-ccch-hhee
Confidence 99999999975 3333 4544
No 307
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.9e-32 Score=253.70 Aligned_cols=133 Identities=38% Similarity=0.626 Sum_probs=119.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|. +|+|.++|+++... +++++|++|+..+++ .|+.||+
T Consensus 34 ~G~nGsGKstLl~~i~G~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l----------- 96 (171)
T cd03228 34 VGPSGSGKSTLLKLLLRLYDPT-----SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI----------- 96 (171)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-----CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-----------
Confidence 5999999999999999999887 89999999886432 245999999998776 5998886
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++
T Consensus 97 ----------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 142 (171)
T cd03228 97 ----------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL 142 (171)
T ss_pred ----------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
++ ++|+|+++|++. .+.. +|++++|++|+
T Consensus 143 ~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 143 AK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred cC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 64 799999999975 5666 99999999885
No 308
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=2.5e-31 Score=270.10 Aligned_cols=168 Identities=24% Similarity=0.372 Sum_probs=133.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|+.+|. +|+|.++| +++|++|++.+++. ||+||+.+.... ..
T Consensus 69 iG~NGsGKSTLl~~I~Gl~~p~-----~G~I~i~g--------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~-- 126 (282)
T cd03291 69 TGSTGSGKTSLLMLILGELEPS-----EGKIKHSG--------RISFSSQFSWIMPG-TIKENIIFGVSY------DE-- 126 (282)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECC--------EEEEEeCccccccc-CHHHHhhccccc------CH--
Confidence 5999999999999999999887 89999988 38999999988875 999999874321 11
Q ss_pred HHHHHHHHHHHcCCCcc-------cCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH-
Q 008843 81 RDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL- 152 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L- 152 (551)
..+.+.++.+++.+. .++.+ +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+
T Consensus 127 --~~~~~~l~~~~l~~~l~~~~~~~~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll 203 (282)
T cd03291 127 --YRYKSVVKACQLEEDITKFPEKDNTVL-GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203 (282)
T ss_pred --HHHHHHHHHhCCHHHHHhcccccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence 112233333443221 12222 2346789999999999999999999999999999999999999999865
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++.|||+++|++. .+ ..+|++++|++|++++.|++++
T Consensus 204 ~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 204 CKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred HHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 5554 4789999999976 44 4699999999999999998755
No 309
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=8.5e-32 Score=261.37 Aligned_cols=187 Identities=28% Similarity=0.424 Sum_probs=158.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc----ceEEEEc-cCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA----YKFAYVR-QEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~----~~i~yv~-Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|||||||||+||+|+|++.|+ +|.|.++|....+.+ +++++|+ |...+.-.+-+.|.+....... .
T Consensus 56 lGaNGAGKSTtLKmLTGll~p~-----~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~ 127 (325)
T COG4586 56 LGANGAGKSTTLKMLTGLLLPT-----SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---E 127 (325)
T ss_pred EcCCCCcchhhHHHHhCccccC-----CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---h
Confidence 6999999999999999999998 899999998764432 3477765 5556666677888877655442 3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
.+.++-+++.+.+.+.|+|++..+ .++|.||-|||.|+.||.+|+++|+||||||||=|||..++..+.+.|++.
T Consensus 128 Ipd~~F~~r~~~l~eiLdl~~~lk-----~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 128 IPDDEFAERLDFLTEILDLEGFLK-----WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred CCHHHHHHHHHHHHHHhcchhhhh-----hhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 556777888999999999965443 467899999999999999999999999999999999999999999999999
Q ss_pred H-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHH
Q 008843 156 A-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYF 202 (551)
Q Consensus 156 a-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f 202 (551)
. +++.||+.+||+. ..+..+||||++++.|+++|+|+.++ ..+-|
T Consensus 203 n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~-l~~~f 248 (325)
T COG4586 203 NEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQ-LQEQF 248 (325)
T ss_pred HHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHH-HHHHh
Confidence 8 4688999999996 47899999999999999999999887 44433
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=4.5e-31 Score=248.08 Aligned_cols=131 Identities=31% Similarity=0.458 Sum_probs=116.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|..+++ +|+|.++|. ++++|++|+..++ ..|++||+.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~-----~G~i~~~~~------~~i~~~~q~~~~~-~~tv~~nl~~~------------- 87 (166)
T cd03223 33 TGPSGTGKSSLFRALAGLWPWG-----SGRIGMPEG------EDLLFLPQRPYLP-LGTLREQLIYP------------- 87 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECCC------ceEEEECCCCccc-cccHHHHhhcc-------------
Confidence 5999999999999999999887 899999874 5699999998765 57999998652
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
..+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++ +.
T Consensus 88 -------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~ 139 (166)
T cd03223 88 -------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GI 139 (166)
T ss_pred -------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CC
Confidence 13579999999999999999999999999999999999999999999986 68
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCC
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEG 186 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G 186 (551)
|+|+++|++. . ...+|++++|++|
T Consensus 140 tiiivsh~~~-~-~~~~d~i~~l~~~ 163 (166)
T cd03223 140 TVISVGHRPS-L-WKFHDRVLDLDGE 163 (166)
T ss_pred EEEEEeCChh-H-HhhCCEEEEEcCC
Confidence 9999999975 3 4689999999765
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=7.6e-32 Score=324.51 Aligned_cols=185 Identities=25% Similarity=0.412 Sum_probs=148.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCC-------------------------------------------------CcceeeEE
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASP-------------------------------------------------RLHLSGLL 31 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~-------------------------------------------------~~~~~G~i 31 (551)
+||||||||||+++|.|+++|.. ....+|+|
T Consensus 1200 VG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 1279 (1466)
T PTZ00265 1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI 1279 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE
Confidence 69999999999999999998720 00138999
Q ss_pred EECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHH-----HHHHHHcCCCcccCcc
Q 008843 32 EVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYV-----NSLLFKLGLVSCADSN 101 (551)
Q Consensus 32 ~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ 101 (551)
.+||.++.+. ++.+|||+|++.+|+. |++|||.++.. ..+.++.++.+ .+.++ .|.+..||.
T Consensus 1280 ~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~-----~at~eeI~~A~k~A~l~~fI~--~LP~GydT~ 1351 (1466)
T PTZ00265 1280 LLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE-----DATREDVKRACKFAAIDEFIE--SLPNKYDTN 1351 (1466)
T ss_pred EECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----CCCHHHHHHHHHHcCCHHHHH--hCccccCCc
Confidence 9999998653 3569999999999975 99999999731 23344433222 22233 244566899
Q ss_pred ccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchhHHhhcccE
Q 008843 102 VGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDI 180 (551)
Q Consensus 102 vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g~tvi~~~H~~~~~i~~~~D~v 180 (551)
+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. .+++|+|+++|+++ . ...+|+|
T Consensus 1352 VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls-t-i~~aD~I 1428 (1466)
T PTZ00265 1352 VGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA-S-IKRSDKI 1428 (1466)
T ss_pred cCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH-H-HHhCCEE
Confidence 985 577899999999999999999999999999999999999999999999986 46899999999974 3 4568999
Q ss_pred EEEcC----CeEE-EecCCCC
Q 008843 181 VLLTE----GKLV-YAGPARD 196 (551)
Q Consensus 181 ~lL~~----G~iv-~~G~~~~ 196 (551)
++|++ |+++ +.|+.++
T Consensus 1429 vvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1429 VVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred EEEeCCCCCCCEEEEecCHHH
Confidence 99998 9965 7898665
No 312
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3.1e-31 Score=260.37 Aligned_cols=167 Identities=31% Similarity=0.454 Sum_probs=144.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|+||||||||-|+|.|+.+|+ +|+|.++|+++.... +++
T Consensus 45 VGESG~GKSTlgr~i~~L~~pt-----~G~i~f~g~~i~~~~-----------------------------------~~~ 84 (268)
T COG4608 45 VGESGCGKSTLGRLILGLEEPT-----SGEILFEGKDITKLS-----------------------------------KEE 84 (268)
T ss_pred EecCCCCHHHHHHHHHcCcCCC-----CceEEEcCcchhhcc-----------------------------------hhH
Confidence 6999999999999999999998 899999999864332 345
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g 159 (551)
+.+++.++|+.+||. ....+++++++|||||||+.|||||+.+|+++++|||+|.||...+.+++++|+++.+ .|
T Consensus 85 ~~~~v~elL~~Vgl~----~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~ 160 (268)
T COG4608 85 RRERVLELLEKVGLP----EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG 160 (268)
T ss_pred HHHHHHHHHHHhCCC----HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence 677899999999984 4455778999999999999999999999999999999999999999999999999985 58
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhhcCCCCCCCCCHHHHHHH
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSRFGYTCPDHVNPAEFLAD 221 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~p~~~~~ad~~~~ 221 (551)
.|.++++||. ..+.+.+||+.+|..|++|+.|+.+++ +..|.|..+...+..
T Consensus 161 lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~---------~~~p~HpYTk~Ll~a 212 (268)
T COG4608 161 LTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEV---------FSNPLHPYTKALLSA 212 (268)
T ss_pred CeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHH---------hhCCCCHHHHHHHHh
Confidence 9999999996 578999999999999999999998773 345555544444333
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=6.4e-31 Score=246.29 Aligned_cols=125 Identities=31% Similarity=0.498 Sum_probs=113.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|+.+|. +|+|.++|+++... ++.++|++|
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~~~-----~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------------------------ 82 (163)
T cd03216 32 LGENGAGKSTLMKILSGLYKPD-----SGEILVDGKEVSFASPRDARRAGIAMVYQ------------------------ 82 (163)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEECCcCCHHHHHhcCeEEEEe------------------------
Confidence 5999999999999999999887 89999999886532 234788877
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 83 -----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 83 -----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred -----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEE
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 190 (551)
++++|.|+|+++|++. ++...+|++++|++|++++
T Consensus 128 ~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 128 LRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9878999999999964 6778899999999999875
No 314
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.8e-31 Score=303.86 Aligned_cols=181 Identities=30% Similarity=0.472 Sum_probs=153.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|||||||||.+.+|-..++|. +|.|.+||+++++. ++++|.|.|+|.||.. |++||+.|+. . .
T Consensus 1022 VG~SGsGKSTvI~LLeRfYdp~-----~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~-~---~- 1090 (1228)
T KOG0055|consen 1022 VGPSGSGKSTVISLLERFYDPD-----AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS-E---E- 1090 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCC-----CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC-C---C-
Confidence 6999999999999999999987 89999999998764 3569999999999997 9999999982 1 1
Q ss_pred CCHHHHHHHHHH---HHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNS---LLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 76 ~~~~~~~~~v~~---~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.+.+|..+.++. -=-..+|.+-.||.+|+ +..+||||||||++||||+++||+||+|||.||+||+++.+.+-+.|
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeAL 1169 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEAL 1169 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHhcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHH
Confidence 344444333221 11124678888999997 57799999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.. +|+|.|++.|+++ .+. .+|.|.++++|++++.|+-++
T Consensus 1170 d~a~-~gRT~IvIAHRLS-TIq-naD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1170 DRAM-EGRTTIVIAHRLS-TIQ-NADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHhh-cCCcEEEEecchh-hhh-cCCEEEEEECCEEEecccHHH
Confidence 9965 5899999999975 454 489999999999999998665
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.9e-31 Score=290.58 Aligned_cols=177 Identities=26% Similarity=0.429 Sum_probs=144.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHH-c---------
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE-L--------- 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~-l--------- 70 (551)
+||||||||||||+|+|..+|+ +|+|.++|. .++||++|+..+++.+||+|++.++.. .
T Consensus 33 iG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 101 (530)
T PRK15064 33 IGANGCGKSTFMKILGGDLEPS-----AGNVSLDPN------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDR 101 (530)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEecCC------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence 6999999999999999999887 799999873 359999999999999999999986421 0
Q ss_pred --CCCCC-----------------CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceE
Q 008843 71 --QLPEI-----------------LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVI 131 (551)
Q Consensus 71 --~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~il 131 (551)
..+.. ....+.+++++++++.+||.+..+ +..+..|||||||||+||++|+.+|++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~~~LSgGq~qrv~lA~aL~~~p~lL 177 (530)
T PRK15064 102 IYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH----YGLMSEVAPGWKLRVLLAQALFSNPDIL 177 (530)
T ss_pred HhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh----cCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 00000 000123456889999999964221 2356789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeE-EEecCCCC
Q 008843 132 YADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL-VYAGPARD 196 (551)
Q Consensus 132 lLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i-v~~G~~~~ 196 (551)
+|||||+|||+.++..+.+.|++ .|.|||+++|++. .+...||++++|++|++ ++.|++++
T Consensus 178 lLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~ 239 (530)
T PRK15064 178 LLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDE 239 (530)
T ss_pred EEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHH
Confidence 99999999999999999999864 5899999999964 67888999999999999 47887654
No 316
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=7.4e-31 Score=263.09 Aligned_cols=171 Identities=26% Similarity=0.360 Sum_probs=141.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEE-----------ECCEeCCcc-------cceEEEEccCCCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-----------VNGKPSSNK-------AYKFAYVRQEDLFFSQLTVRE 62 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~-----------i~g~~~~~~-------~~~i~yv~Q~~~l~~~lTV~e 62 (551)
+||||||||||||+|+|..+|+ +|+|. ++|+++... ..+++|++|+...++. ++.+
T Consensus 32 vG~nGsGKSTLlk~l~Gl~~p~-----~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~ 105 (255)
T cd03236 32 VGPNGIGKSTALKILAGKLKPN-----LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKG 105 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-----CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHH
Confidence 5999999999999999999987 89995 778776431 1237899999888874 8888
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCH
Q 008843 63 TLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA 142 (551)
Q Consensus 63 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~ 142 (551)
++.+... ..+.++.+.++++.+||.+..+ ..++.||||||||++||++|+.+|+++++||||+|||+
T Consensus 106 ~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~ 172 (255)
T cd03236 106 KVGELLK--------KKDERGKLDELVDQLELRHVLD-----RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172 (255)
T ss_pred HHHHHhc--------hhHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 8876421 1233456789999999965444 45678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEec
Q 008843 143 FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 143 ~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 192 (551)
.++..+.+.|++++++|+|||+++|++. .+...+|++++|+ |++++.|
T Consensus 173 ~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 173 KQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 9999999999999888999999999964 6777899999994 5566544
No 317
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=3.9e-31 Score=289.43 Aligned_cols=181 Identities=21% Similarity=0.316 Sum_probs=142.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCC-CCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCC--CCCHHHHHHHHHHc-
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFS--QLTVRETLSLAAEL- 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~-~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~--~lTV~e~l~~~~~l- 70 (551)
+||||||||||+|+|+|..++ + +|+|.++|++.... ++++||++|++.++. ..|+++++.+....
T Consensus 292 ~G~NGsGKSTLl~~l~G~~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
T PRK10938 292 VGPNGAGKSTLLSLITGDHPQGY-----SNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS 366 (490)
T ss_pred ECCCCCCHHHHHHHHcCCCCccc-----CCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc
Confidence 699999999999999998754 3 79999999865321 245999999876544 35777776543211
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 71 -QLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 71 -~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
....... .+.+++++++++.+||.+ ..+ .+++.|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 367 ~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 440 (490)
T PRK10938 367 IGIYQAVS-DRQQKLAQQWLDILGIDKRTAD-----APFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLV 440 (490)
T ss_pred cccccCCC-HHHHHHHHHHHHHcCCchhhcc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 1111111 233457889999999965 443 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC-EEEEEecCCchhHHh-hcccEEEEcCCeEEEecC
Q 008843 149 MEALRQLAQDGH-TVICSIHQPRGSVYF-KFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 149 ~~~L~~la~~g~-tvi~~~H~~~~~i~~-~~D~v~lL~~G~iv~~G~ 193 (551)
.+.|++++++|. |||+++|++. .+.. .+|++++|++|++++.-.
T Consensus 441 ~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 441 RRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEeec
Confidence 999999987765 7999999975 5555 589999999999987543
No 318
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=6.1e-31 Score=291.55 Aligned_cols=170 Identities=24% Similarity=0.342 Sum_probs=140.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|+ +|+|.+||.++.+. ++.++||+|++.+|+. |++|| . ..
T Consensus 355 vG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~~ 419 (547)
T PRK10522 355 IGGNGSGKSTLAMLLTGLYQPQ-----SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------KP 419 (547)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c------Cc
Confidence 5999999999999999999987 89999999998653 3469999999998886 77776 1 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCC--cCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDA--KVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
..++.+++.++.+++.+..+ .++. ...+||||||||++|||+++++|++++||||||+||+.++..+.+.|.
T Consensus 420 ----~~~~~~~~~~~~~~l~~~~~--~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 420 ----ANPALVEKWLERLKMAHKLE--LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred ----hHHHHHHHHHHHcCCchhhh--ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 12345678888998865432 2222 246899999999999999999999999999999999999999999998
Q ss_pred HHH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 154 QLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 154 ~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
+.. +.|+|+|+++|+++ ....+|++++|++|+++....
T Consensus 494 ~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 494 PLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSELTG 532 (547)
T ss_pred HHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEecC
Confidence 765 45899999999973 456799999999999987643
No 319
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.1e-30 Score=289.99 Aligned_cols=168 Identities=28% Similarity=0.361 Sum_probs=143.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|..+|+ +|+|.++ .+++|++|+..+++.+||+|++.+.... ...
T Consensus 371 ~G~NGsGKSTLlk~L~Gl~~p~-----~G~I~~~--------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~-- 430 (590)
T PRK13409 371 VGPNGIGKTTFAKLLAGVLKPD-----EGEVDPE--------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS-- 430 (590)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEEe--------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh--
Confidence 5999999999999999999887 8999886 2599999998888899999999875321 111
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g 159 (551)
...++++++.+||.+..| +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|
T Consensus 431 -~~~~~~~L~~l~l~~~~~-----~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g 504 (590)
T PRK13409 431 -SYYKSEIIKPLQLERLLD-----KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEERE 504 (590)
T ss_pred -HHHHHHHHHHCCCHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 234678999999965444 45678999999999999999999999999999999999999999999999986 48
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+|||+++||+. .+...+|++++|+ |++...|...+
T Consensus 505 ~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~~~ 539 (590)
T PRK13409 505 ATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHASG 539 (590)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEc-CcceeeeecCC
Confidence 99999999964 6778899999996 48887777554
No 320
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=247.45 Aligned_cols=198 Identities=26% Similarity=0.314 Sum_probs=165.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
|||||||||||.++|+|.-... ..+|+|.++|+++... +..+...+|.+.=+|..|+.+.|..+.+.+...
T Consensus 36 MGPNGsGKSTLa~~i~G~p~Y~---Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~ 112 (251)
T COG0396 36 MGPNGSGKSTLAYTIMGHPKYE---VTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGA 112 (251)
T ss_pred ECCCCCCHHHHHHHHhCCCCce---EecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhcc
Confidence 7999999999999999985432 3589999999988653 233788999999999999999999887654321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.-...+..+.+++.++.+++.+ .+++.+. -++|||||||..|+..++.+|++.+||||-||||..+-..|.+.++
T Consensus 113 ~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~ 188 (251)
T COG0396 113 RGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188 (251)
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence 1113455677889999999965 3444332 4899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhc--ccEEEEcCCeEEEecCCCCchhhHHhhcCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKF--DDIVLLTEGKLVYAGPARDEPLAYFSRFGYTC 209 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~--D~v~lL~~G~iv~~G~~~~~~~~~f~~~g~~~ 209 (551)
+++++|.+++++||..+ +.... |++.+|.+|+|+..|.+ + ....++.-||.|
T Consensus 189 ~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~GrIv~sG~~-e-l~~~le~~gy~~ 242 (251)
T COG0396 189 ALREEGRGVLIITHYQR--LLDYIKPDKVHVLYDGRIVKSGDP-E-LAEELEEKGYDW 242 (251)
T ss_pred HHhcCCCeEEEEecHHH--HHhhcCCCEEEEEECCEEEecCCH-H-HHHHHHHhchHH
Confidence 99999999999999854 55554 99999999999999999 5 788888888865
No 321
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.97 E-value=3.3e-31 Score=292.69 Aligned_cols=164 Identities=37% Similarity=0.534 Sum_probs=136.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|+ +|+|.+||.++.+. +++++||+|++.+|+. |++||+.++.. .
T Consensus 354 vG~sGsGKSTL~~ll~g~~~~~-----~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~ 422 (529)
T TIGR02857 354 VGPSGAGKSTLLNLLLGFVDPT-----EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----D 422 (529)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC-----C
Confidence 5999999999999999999987 89999999987653 3459999999999985 99999988531 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++ +.+++.++..++.+ -.||.+|+ ....||||||||++|||+|+++|++++||||||+||+.++..+
T Consensus 423 ~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i 497 (529)
T TIGR02857 423 ASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALV 497 (529)
T ss_pred CCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 222 23445555555432 34777765 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
.+.|+++. +++|+|+++|+++ . ...+|++++|
T Consensus 498 ~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l 529 (529)
T TIGR02857 498 TEALRALA-QGRTVLLVTHRLA-L-AERADRIVVL 529 (529)
T ss_pred HHHHHHhc-CCCEEEEEecCHH-H-HHhCCEEEeC
Confidence 99999985 5899999999974 3 4569999875
No 322
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.97 E-value=3e-31 Score=292.99 Aligned_cols=152 Identities=35% Similarity=0.518 Sum_probs=127.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+|+|+|..+|+ +|+|.+||.++.+. ++.++||+|++.+|+. |++||+.++. + ..
T Consensus 367 vG~SGsGKSTLl~lL~g~~~p~-----~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~ 435 (529)
T TIGR02868 367 LGPSGSGKSTLLMLLTGLLDPL-----QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DA 435 (529)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----C-CC
Confidence 5999999999999999999988 89999999987643 3469999999999997 9999999863 1 12
Q ss_pred CHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
+++ .++++++..++. +-.||.+|+ ....||||||||++|||||+++|++++||||||+||+.++..+.
T Consensus 436 ~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~ 510 (529)
T TIGR02868 436 TDE----ELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELL 510 (529)
T ss_pred CHH----HHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 333 344455555443 345888886 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCC
Q 008843 150 EALRQLAQDGHTVICSIHQP 169 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~ 169 (551)
+.|+++. +++|+|+++|++
T Consensus 511 ~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 511 EDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHhc-CCCEEEEEecCC
Confidence 9999864 479999999984
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.3e-30 Score=289.15 Aligned_cols=175 Identities=27% Similarity=0.329 Sum_probs=143.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHH-cC--------
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE-LQ-------- 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~-l~-------- 71 (551)
+||||||||||||+|+|..+|+ +|+|.+++. .++|||+|++.+++.+||.||+.++.. .+
T Consensus 39 iG~NGsGKSTLlk~i~G~~~p~-----~G~i~~~~~------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (556)
T PRK11819 39 LGLNGAGKSTLLRIMAGVDKEF-----EGEARPAPG------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNE 107 (556)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEecCC------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence 6999999999999999999887 899998752 469999999999999999999987531 00
Q ss_pred ----CCCCCC--------------------HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhC
Q 008843 72 ----LPEILS--------------------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS 127 (551)
Q Consensus 72 ----~~~~~~--------------------~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~ 127 (551)
...... ..+.+++++++++.+||.. . ++.+++|||||||||+||++|+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-----~~~~~~LSgGqkqrv~la~al~~~ 181 (556)
T PRK11819 108 IYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W-----DAKVTKLSGGERRRVALCRLLLEK 181 (556)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c-----cCchhhcCHHHHHHHHHHHHHhCC
Confidence 000000 0012456888999999942 3 345678999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEE-EecCCCC
Q 008843 128 PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD 196 (551)
Q Consensus 128 p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 196 (551)
|++|||||||+|||+.++..+.+.|+++. .|||++||++ ..+...+|++++|++|+++ +.|+.++
T Consensus 182 p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 182 PDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred CCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 99999999999999999999999999873 5999999996 4677889999999999986 7776543
No 324
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.1e-31 Score=253.87 Aligned_cols=182 Identities=30% Similarity=0.429 Sum_probs=150.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccC--CCCCCCCCHHHHHHHH--HHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQE--DLFFSQLTVRETLSLA--AEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~--~~l~~~lTV~e~l~~~--~~l 70 (551)
+|||||||||||++++|..+|+ +|.+.+.|++.... +++||+|.-+ ..+.+..+|+|-+.-+ +..
T Consensus 63 ~G~NGsGKTTLL~ll~~~~~ps-----sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~si 137 (257)
T COG1119 63 VGPNGAGKTTLLSLLTGEHPPS-----SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASI 137 (257)
T ss_pred ECCCCCCHHHHHHHHhcccCCC-----CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccc
Confidence 5999999999999999999987 89999999876432 4569999754 3456677888877432 222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
..+.....++..+++..+++.+|+.+.+|.. ...||-||||||-|||||+.+|++||||||++|||...++.+++
T Consensus 138 G~y~~~~~~~~~~~a~~lle~~g~~~la~r~-----~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~ 212 (257)
T COG1119 138 GIYQEDLTAEDLAAAQWLLELLGAKHLADRP-----FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLN 212 (257)
T ss_pred cccccCCCHHHHHHHHHHHHHcchhhhccCc-----hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH
Confidence 2222122355667899999999998777654 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHhC--CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 151 ALRQLAQD--GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 151 ~L~~la~~--g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
.|.+++.. +.++|++||++ +++-..|++++++++|+++++|.
T Consensus 213 ~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 213 RLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 99999865 78999999996 57888899999999999999874
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=287.29 Aligned_cols=168 Identities=28% Similarity=0.379 Sum_probs=140.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCC--CCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL--FFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||+|+|+|..+|+ +|+|.++|. .++||++|+.. +++.+||.|++.+... .
T Consensus 351 ~G~NGsGKSTLl~~i~G~~~p~-----~G~i~~~~~------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~----- 411 (530)
T PRK15064 351 IGENGVGKTTLLRTLVGELEPD-----SGTVKWSEN------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E----- 411 (530)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCc------eEEEEEcccccccCCCCCcHHHHHHHhcc---C-----
Confidence 5999999999999999999887 899999874 46999999863 5677999999864211 1
Q ss_pred HHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 79 EERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
.+.+++++++++.+|+. +.. +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 412 ~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-- 484 (530)
T PRK15064 412 GDDEQAVRGTLGRLLFSQDDI-----KKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-- 484 (530)
T ss_pred CccHHHHHHHHHHcCCChhHh-----cCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--
Confidence 11235678899999994 333 4467789999999999999999999999999999999999999999999886
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEcCCeEE-EecCCCC
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD 196 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 196 (551)
+.|||++||++ ..+...||++++|++|+++ +.|++++
T Consensus 485 -~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~ 522 (530)
T PRK15064 485 -EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEE 522 (530)
T ss_pred -CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHH
Confidence 45999999996 4778889999999999998 7776543
No 326
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=6e-31 Score=304.38 Aligned_cols=189 Identities=30% Similarity=0.460 Sum_probs=170.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+|+|||||||++|+|+|..+++ +|++.++|.++... .+.+||+||+|.+++.+|.+|+|.+.++++.
T Consensus 597 LG~NGAGKtT~f~mltG~~~~t-----~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG-- 669 (885)
T KOG0059|consen 597 LGVNGAGKTTTFKMLTGETKPT-----SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG-- 669 (885)
T ss_pred ecCCCCCchhhHHHHhCCccCC-----cceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC--
Confidence 5999999999999999999988 89999999987642 3459999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
....+.++.++.+++.+||.+.+|+. ++.+|||+|||+++|.+|+.+|++++|||||+|+||.+++.+.+++++
T Consensus 670 -~~~~di~~~v~~ll~~~~L~~~~~~~-----~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~ 743 (885)
T KOG0059|consen 670 -LPRSDIGSAIEKLLRLVGLGPYANKQ-----VRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIAR 743 (885)
T ss_pred -CChhHHHHHHHHHHHHcCChhhhccc-----hhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 34556777799999999997666654 668999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhh
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSR 204 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~ 204 (551)
+.+.|+.||+++|.+ ++...+|||+.+|.+|++...|++++ .+..|..
T Consensus 744 ~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~-LKsrfG~ 791 (885)
T KOG0059|consen 744 LRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQE-LKSRYGS 791 (885)
T ss_pred HHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHH-HHhhcCC
Confidence 999888999999996 58999999999999999999999988 6666643
No 327
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=8.5e-31 Score=317.67 Aligned_cols=176 Identities=20% Similarity=0.299 Sum_probs=147.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|.|+.+|+ +|+|.+||.++.+. +++++|||||+.+|+. |++|||.+.. .
T Consensus 1268 VG~SGSGKSTL~~lL~rl~~p~-----~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~ 1335 (1495)
T PLN03232 1268 VGRTGAGKSSMLNALFRIVELE-----KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------E 1335 (1495)
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-----CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------C
Confidence 5999999999999999999987 89999999998653 3569999999999997 9999997532 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +.++++..++. +..||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1336 ~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I 1410 (1495)
T PLN03232 1336 HNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410 (1495)
T ss_pred CCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 23333 44444444442 345777765 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++.. +++|+|+++|+++ .+. .||+|++|++|++++.|++++
T Consensus 1411 q~~L~~~~-~~~TvI~IAHRl~-ti~-~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1411 QRTIREEF-KSCTMLVIAHRLN-TII-DCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHc-CCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHH
Confidence 99999874 4799999999974 444 489999999999999999876
No 328
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.1e-31 Score=245.88 Aligned_cols=184 Identities=29% Similarity=0.417 Sum_probs=158.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECC-EeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-KPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g-~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+|||||||||+|++|+|..+|+ .|+|.++| .++... +..||-=+|.+..|+.+||+|||..+..-..+
T Consensus 37 IGpNGAGKTT~mD~ItGKtrp~-----~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~ 111 (249)
T COG4674 37 IGPNGAGKTTLMDVITGKTRPQ-----EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKS 111 (249)
T ss_pred ECCCCCCceeeeeeecccCCCC-----cceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcc
Confidence 6999999999999999999887 89999999 666543 23488899999999999999999998654321
Q ss_pred C-----CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 74 E-----ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 74 ~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
- .....+-+++++++|+..||.+.+|.. ...||-||||++.|++-++++|++|++|||++|+-.....+.
T Consensus 112 v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~t 186 (249)
T COG4674 112 VFASLFARLRAEERRRIDELLATIGLGDERDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT 186 (249)
T ss_pred hHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHH
Confidence 0 011233456899999999998777654 457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
-++|++++. +++|+++.||+ ..+..++|+|.+|++|.+...|+.++
T Consensus 187 aeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGsld~ 232 (249)
T COG4674 187 AELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEGSLDE 232 (249)
T ss_pred HHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEeccceeecccHHH
Confidence 999999985 58999999996 57889999999999999999998876
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=2.3e-30 Score=287.34 Aligned_cols=171 Identities=22% Similarity=0.333 Sum_probs=140.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|+ +|+|.+||.++.+. ++.++||+|++.+|+. |++||.. +
T Consensus 374 vG~sGsGKSTl~~ll~g~~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-- 438 (555)
T TIGR01194 374 VGENGCGKSTLAKLFCGLYIPQ-----EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-- 438 (555)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-------c--
Confidence 5999999999999999999987 89999999998653 2459999999998886 7888731 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCc-cccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH-
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADS-NVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR- 153 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~-~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~- 153 (551)
...++.+++.++.+++.+..+. +-|.+....||||||||++|||+++.+|++++|||||++||+.++..+.+.+.
T Consensus 439 ---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~ 515 (555)
T TIGR01194 439 ---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515 (555)
T ss_pred ---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 1223457788999998654322 22323346899999999999999999999999999999999999999998664
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEe
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYA 191 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 191 (551)
.+..+|+|+|+++|+++ ....+|+|++|++|+++..
T Consensus 516 ~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 516 DLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 56567899999999974 4567999999999999853
No 330
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.5e-30 Score=316.02 Aligned_cols=177 Identities=23% Similarity=0.300 Sum_probs=148.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+++|.|+++|+ +|+|.+||.++.+. ++++++||||+.+|+. |++|||.++. .
T Consensus 1271 VGrSGSGKSTLl~lL~rl~~p~-----~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~ 1338 (1622)
T PLN03130 1271 VGRTGAGKSSMLNALFRIVELE-----RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------E 1338 (1622)
T ss_pred ECCCCCCHHHHHHHHhCcCCCC-----CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------C
Confidence 6999999999999999999987 89999999998653 3569999999999997 9999997642 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +.++++..++ ....||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1339 ~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I 1413 (1622)
T PLN03130 1339 HNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413 (1622)
T ss_pred CCHHH----HHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 23333 3344444433 2345788875 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
.+.|++.. +++|+|+++|+++ .+. .||||++|++|++++.|++++.
T Consensus 1414 q~~I~~~~-~~~TvI~IAHRL~-tI~-~~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1414 QKTIREEF-KSCTMLIIAHRLN-TII-DCDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred HHHHHHHC-CCCEEEEEeCChH-HHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 99999875 4899999999975 444 4899999999999999998873
No 331
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=2.1e-30 Score=287.41 Aligned_cols=175 Identities=27% Similarity=0.318 Sum_probs=141.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHc-C--------
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAEL-Q-------- 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l-~-------- 71 (551)
+|||||||||||++|+|..+|+ +|+|.+++ ..++|||+|++.+++.+||.||+.++... +
T Consensus 37 iG~NGsGKSTLl~~i~G~~~p~-----~G~i~~~~------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~ 105 (552)
T TIGR03719 37 LGLNGAGKSTLLRIMAGVDKEF-----NGEARPAP------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNE 105 (552)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEecC------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence 6999999999999999999887 89999875 24699999999999999999999875321 0
Q ss_pred ----CCCCCCH--------------------HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhC
Q 008843 72 ----LPEILSV--------------------EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS 127 (551)
Q Consensus 72 ----~~~~~~~--------------------~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~ 127 (551)
....... .+..++++++++.+|+.. . +..++.|||||||||+||++|+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-----~~~~~~LSgGqkqrv~la~al~~~ 179 (552)
T TIGR03719 106 ISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-W-----DADVTKLSGGERRRVALCRLLLSK 179 (552)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-c-----cCchhhcCHHHHHHHHHHHHHhcC
Confidence 0000000 001245667788888832 2 345778999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEE-EecCCCC
Q 008843 128 PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD 196 (551)
Q Consensus 128 p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 196 (551)
|++|+|||||++||+.++..+.+.|+++ +.|||+++|++ ..+...+|++++|++|+++ +.|+.++
T Consensus 180 p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~~~~ 245 (552)
T TIGR03719 180 PDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSS 245 (552)
T ss_pred CCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcCeEEEEECCEEEEecCCHHH
Confidence 9999999999999999999999999876 35999999996 4677889999999999976 6776554
No 332
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=243.71 Aligned_cols=182 Identities=30% Similarity=0.401 Sum_probs=147.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc-----ceEEEEccCC--CCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-----YKFAYVRQED--LFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~-----~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+|.||||||||+|+|+|.+.++ +|+|.++|.++++.. ..++-|+||+ ..++.||+.||+..+..-...
T Consensus 38 iGsNGAGKSTlln~iaG~l~~t-----~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~ 112 (263)
T COG1101 38 IGSNGAGKSTLLNAIAGDLKPT-----SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKK 112 (263)
T ss_pred EcCCCccHHHHHHHhhCccccC-----CceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcc
Confidence 6999999999999999999988 899999999987652 2378899997 579999999999987642111
Q ss_pred CCCC---HHHHHHHHHHHHHHc--CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 74 EILS---VEERDEYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 74 ~~~~---~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
+.++ ...+.+...+-++.+ ||++..++++ .-|||||||-+++++|-++.|+||+|||-|++|||.++..+
T Consensus 113 rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~i-----glLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~v 187 (263)
T COG1101 113 RGLSSALNERRRSSFRERLARLGLGLENRLSDRI-----GLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFV 187 (263)
T ss_pred cccchhhhHHHHHHHHHHHhhcccchhhhhcChh-----hhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHH
Confidence 1122 123344445556665 5566555554 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 149 MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 149 ~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
++.-.++.+ .+.|.+++||++. .+..+-+|.++|++|+||.+-.
T Consensus 188 m~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 188 MELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEcc
Confidence 999999875 4669999999986 4556789999999999997543
No 333
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=4.4e-30 Score=260.56 Aligned_cols=191 Identities=26% Similarity=0.349 Sum_probs=166.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYVRQED--LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~ 69 (551)
+|+||||||-..+.+.|+++.......+|+|.++|+++-.. ..+|++++|++ .+.|-.|+.+.+.-..+
T Consensus 42 VGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~ 121 (534)
T COG4172 42 VGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR 121 (534)
T ss_pred EecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHH
Confidence 59999999999999999998765666799999999986321 14699999998 67888899888877766
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
++. ..++++.++++.++|+.+|+.+-... -+.++++|||||||||.||+||+++|++|+.||||++||...+.+|+
T Consensus 122 ~Hr--g~~~~~Ar~r~lelL~~VgI~~p~~r--l~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL 197 (534)
T COG4172 122 LHR--GLSRAAARARALELLELVGIPEPEKR--LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL 197 (534)
T ss_pred HHh--cccHHHHHHHHHHHHHHcCCCchhhh--hhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHH
Confidence 653 45677888899999999999764432 36789999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|++|. +.|.+++++|||. ..+..++|||.+|.+|++++.|++++
T Consensus 198 ~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~~~t~~ 244 (534)
T COG4172 198 DLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVETGTTET 244 (534)
T ss_pred HHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeecCcHHH
Confidence 9999997 4699999999996 47889999999999999999998765
No 334
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=4.6e-30 Score=311.76 Aligned_cols=176 Identities=21% Similarity=0.314 Sum_probs=148.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+++|.|+.+++ +|+|.+||.++.+. ++++++||||+.+|+. |++|||.... .
T Consensus 1318 VGrTGsGKSTL~~lL~rl~~~~-----~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~ 1385 (1522)
T TIGR00957 1318 VGRTGAGKSSLTLGLFRINESA-----EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------Q 1385 (1522)
T ss_pred ECCCCCCHHHHHHHHhcCccCC-----CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------C
Confidence 5999999999999999999987 89999999998754 3569999999999997 9999996321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +.++++..++. +..||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1386 ~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I 1460 (1522)
T TIGR00957 1386 YSDEE----VWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI 1460 (1522)
T ss_pred CCHHH----HHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 23333 44455555543 345788875 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++.. +++|+|+++|+++ .+ ..+|||++|++|++++.|++++
T Consensus 1461 q~~l~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1461 QSTIRTQF-EDCTVLTIAHRLN-TI-MDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred HHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99998865 4799999999974 34 4589999999999999999876
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=4.7e-30 Score=309.06 Aligned_cols=177 Identities=23% Similarity=0.343 Sum_probs=141.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEEC-CEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHc-CC-
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN-GKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAEL-QL- 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~-g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l-~~- 72 (551)
+||||||||||+++|+|+++|+ +|+|.++ |.++... ++.+|||+|++.+|+. |++||+.++... +.
T Consensus 417 vG~SGsGKSTLl~lL~gl~~p~-----~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~ 490 (1466)
T PTZ00265 417 VGESGCGKSTILKLIERLYDPT-----EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDL 490 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhccCC-----CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCcccc
Confidence 6999999999999999999987 8999994 6766432 3459999999999985 999999986410 00
Q ss_pred --------CC-----------------------------C----C-----CHHHHHHHHHHHHHHcCCC-------cccC
Q 008843 73 --------PE-----------------------------I----L-----SVEERDEYVNSLLFKLGLV-------SCAD 99 (551)
Q Consensus 73 --------~~-----------------------------~----~-----~~~~~~~~v~~~l~~lgL~-------~~~~ 99 (551)
+. . . .....++.+.++++.+++. +..|
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~d 570 (1466)
T PTZ00265 491 EALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYE 570 (1466)
T ss_pred chhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccC
Confidence 00 0 0 0001124466666666654 3456
Q ss_pred ccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchhHHhhcc
Q 008843 100 SNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFD 178 (551)
Q Consensus 100 ~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D 178 (551)
|.+|. .+..||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++++ +|+|+|+++|+++ .+ ..+|
T Consensus 571 T~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD 647 (1466)
T PTZ00265 571 TLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI-RYAN 647 (1466)
T ss_pred ceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCC
Confidence 77765 4788999999999999999999999999999999999999999999999975 5899999999975 44 5799
Q ss_pred cEEEEcCC
Q 008843 179 DIVLLTEG 186 (551)
Q Consensus 179 ~v~lL~~G 186 (551)
+|++|++|
T Consensus 648 ~Iivl~~g 655 (1466)
T PTZ00265 648 TIFVLSNR 655 (1466)
T ss_pred EEEEEeCC
Confidence 99999986
No 336
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.2e-29 Score=240.13 Aligned_cols=127 Identities=31% Similarity=0.454 Sum_probs=112.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|.+ ++|++|+..
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~-------i~~~~q~~~--------------------------- 71 (177)
T cd03222 31 VGPNGTGKTTAVKILAGQLIPN-----GDNDEWDGIT-------PVYKPQYID--------------------------- 71 (177)
T ss_pred ECCCCChHHHHHHHHHcCCCCC-----CcEEEECCEE-------EEEEcccCC---------------------------
Confidence 5999999999999999999987 8999999863 788888532
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG- 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g- 159 (551)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++++++
T Consensus 72 -----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~ 122 (177)
T cd03222 72 -----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK 122 (177)
T ss_pred -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999998765
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEe--cCCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYA--GPARD 196 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~--G~~~~ 196 (551)
.|||+++|++ ..+...+|++++|+++-.++. |+|..
T Consensus 123 ~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 123 KTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 8999999996 467778999999988766654 55543
No 337
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=5.2e-30 Score=310.83 Aligned_cols=176 Identities=25% Similarity=0.356 Sum_probs=148.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+++|.|++++. +|+|.+||.++.+. +++++|||||+.+|+. |++|||.... .
T Consensus 1342 VGrTGSGKSTLl~lLlrl~~p~-----~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~ 1409 (1560)
T PTZ00243 1342 VGRTGSGKSTLLLTFMRMVEVC-----GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------E 1409 (1560)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------C
Confidence 6999999999999999999987 89999999998653 3569999999999987 9999995421 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccCccccCCcCCCCChHHhHHHHHHHHHhhC-CceEEEeCCCCCCCHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIAS-PSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~-p~illLDEPtsGLD~~~~~~ 147 (551)
.++ +.+.+.++..||.+ -.||.+|+ ...+||||||||++|||||+++ |+||+||||||+||+.+...
T Consensus 1410 ~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~ 1484 (1560)
T PTZ00243 1410 ASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQ 1484 (1560)
T ss_pred CCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHH
Confidence 233 33556666666543 35777875 5678999999999999999995 89999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|.+.|++.. +++|+|+++|+++ ....||+|++|++|++++.|++++
T Consensus 1485 Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1485 IQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred HHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 999999864 4799999999974 445689999999999999999877
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=1.7e-29 Score=280.08 Aligned_cols=166 Identities=27% Similarity=0.362 Sum_probs=136.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+++|+|..+|+ +|+|.+++. .++||++|+. .+++.+||.|++.+...... ....
T Consensus 354 ~G~NGsGKSTLl~~l~G~~~p~-----~G~i~~~~~------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~ 419 (552)
T TIGR03719 354 IGPNGAGKSTLFRMITGQEQPD-----SGTIKIGET------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR 419 (552)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----CeEEEECCc------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc
Confidence 5999999999999999999887 899998542 2699999996 58888999999988643211 1111
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
+..++++++.+|+.+. ..+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.
T Consensus 420 --~~~~~~~l~~~~l~~~----~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--- 490 (552)
T TIGR03719 420 --EVPSRAYVGRFNFKGS----DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--- 490 (552)
T ss_pred --hHHHHHHHHhCCCChh----HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---
Confidence 2235578999999531 1234567899999999999999999999999999999999999999999999973
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcC-CeEEE
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTE-GKLVY 190 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~ 190 (551)
.|||++||++ ..+...||++++|++ |+++.
T Consensus 491 ~~viivsHd~-~~~~~~~d~i~~l~~~~~~~~ 521 (552)
T TIGR03719 491 GCAVVISHDR-WFLDRIATHILAFEGDSHVEW 521 (552)
T ss_pred CeEEEEeCCH-HHHHHhCCEEEEEECCCeEEE
Confidence 3899999996 467788999999986 57763
No 339
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=2.7e-29 Score=278.68 Aligned_cols=164 Identities=27% Similarity=0.367 Sum_probs=135.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+++|+|..+|+ +|+|.+++. .++||++|+. .+++.+||.|++.+...... ....
T Consensus 356 ~G~NGsGKSTLl~~i~G~~~p~-----~G~i~~~~~------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~ 421 (556)
T PRK11819 356 IGPNGAGKSTLFKMITGQEQPD-----SGTIKIGET------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR 421 (556)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCc------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc
Confidence 5999999999999999999887 899998542 2599999996 78889999999988653221 1111
Q ss_pred HHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 80 ERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
+..++++++.+|+.+ .. ++.+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.
T Consensus 422 --~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-- 492 (556)
T PRK11819 422 --EIPSRAYVGRFNFKGGDQ-----QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP-- 492 (556)
T ss_pred --HHHHHHHHHhCCCChhHh-----cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--
Confidence 123457899999953 23 34567899999999999999999999999999999999999999999999873
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcC-CeEE
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTE-GKLV 189 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv 189 (551)
| |||++||++. .+...||++++|++ |++.
T Consensus 493 ~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 493 G-CAVVISHDRW-FLDRIATHILAFEGDSQVE 522 (556)
T ss_pred C-eEEEEECCHH-HHHHhCCEEEEEECCCeEE
Confidence 4 8999999964 77888999999985 7776
No 340
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=3.6e-29 Score=236.75 Aligned_cols=140 Identities=30% Similarity=0.358 Sum_probs=114.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||||+|.+ . +|++.++|......+.+++|++|
T Consensus 27 ~G~nG~GKSTLl~~il~----~-----~G~v~~~~~~~~~~~~~~~~~~q------------------------------ 67 (176)
T cd03238 27 TGVSGSGKSTLVNEGLY----A-----SGKARLISFLPKFSRNKLIFIDQ------------------------------ 67 (176)
T ss_pred ECCCCCCHHHHHHHHhh----c-----CCcEEECCcccccccccEEEEhH------------------------------
Confidence 59999999999999964 2 68898988743222334788877
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhC--CceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS--PSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~--p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
.+.++.++|... ..+.+++.||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|++++++
T Consensus 68 -----~~~l~~~~L~~~----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~ 138 (176)
T cd03238 68 -----LQFLIDVGLGYL----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL 138 (176)
T ss_pred -----HHHHHHcCCCcc----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 235677887532 12346788999999999999999999 9999999999999999999999999999878
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcCCeEEE
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 190 (551)
|+|||+++|++. .+ ..+|++++|.+|+..+
T Consensus 139 g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 139 GNTVILIEHNLD-VL-SSADWIIDFGPGSGKS 168 (176)
T ss_pred CCEEEEEeCCHH-HH-HhCCEEEEECCCCCCC
Confidence 999999999975 44 5699999997765433
No 341
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=2.2e-29 Score=305.10 Aligned_cols=175 Identities=25% Similarity=0.351 Sum_probs=147.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+++|.|+.+ . +|+|.+||.++... +++++||||++.+|+. |++|||.... .
T Consensus 1251 vGrSGsGKSTLl~lL~rl~~-~-----~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~ 1317 (1490)
T TIGR01271 1251 LGRTGSGKSTLLSALLRLLS-T-----EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q 1317 (1490)
T ss_pred ECCCCCCHHHHHHHHhhhcC-C-----CcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C
Confidence 59999999999999999985 3 79999999998753 3569999999999997 9999995421 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+ ++.+.++++..+|. +..|+.+++ ...+||||||||++|||||+++|+||+||||||+||..+...|
T Consensus 1318 ~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I 1392 (1490)
T TIGR01271 1318 WS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392 (1490)
T ss_pred CC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH
Confidence 22 23456667776663 345777775 4668999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++.. +++|||+++|+++ .+ ..||+|++|++|+++..|++++
T Consensus 1393 ~~~L~~~~-~~~TvI~IaHRl~-ti-~~~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1393 RKTLKQSF-SNCTVILSEHRVE-AL-LECQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred HHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999875 4799999999974 34 4589999999999999998876
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.3e-29 Score=281.59 Aligned_cols=167 Identities=29% Similarity=0.466 Sum_probs=137.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCC--CCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED--LFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||||+|+|..+|+ +|+|.+++. .++||++|+. .+.+..|+.+++.. .. +
T Consensus 344 ~G~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~~------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~-~----- 403 (638)
T PRK10636 344 LGRNGAGKSTLIKLLAGELAPV-----SGEIGLAKG------IKLGYFAQHQLEFLRADESPLQHLAR---LA-P----- 403 (638)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCeEEECCC------EEEEEecCcchhhCCccchHHHHHHH---hC-c-----
Confidence 6999999999999999999887 899998642 3699999974 35566788776531 11 1
Q ss_pred HHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 79 EERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
....+.+.++++.+++.. ..+ .+++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 404 ~~~~~~~~~~L~~~~l~~~~~~-----~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-- 476 (638)
T PRK10636 404 QELEQKLRDYLGGFGFQGDKVT-----EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-- 476 (638)
T ss_pred hhhHHHHHHHHHHcCCChhHhc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--
Confidence 122456789999999952 333 456789999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEcCCeEE-EecCCCC
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD 196 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 196 (551)
. .|||++|||+ ..+...||++++|++|+++ +.|+.++
T Consensus 477 ~-gtvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~ 514 (638)
T PRK10636 477 E-GALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLED 514 (638)
T ss_pred C-CeEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHH
Confidence 3 4999999996 5788889999999999997 7787654
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=4.1e-29 Score=277.47 Aligned_cols=162 Identities=28% Similarity=0.419 Sum_probs=134.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEE-----------ECCEeCCcc-------cceEEEEccCCCCCCC---CC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-----------VNGKPSSNK-------AYKFAYVRQEDLFFSQ---LT 59 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~-----------i~g~~~~~~-------~~~i~yv~Q~~~l~~~---lT 59 (551)
+||||||||||||+|+|.++|+ +|+|. ++|.++... ..++++.+|.....+. .|
T Consensus 105 vG~NGaGKSTLlkiL~G~l~p~-----~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t 179 (590)
T PRK13409 105 LGPNGIGKTTAVKILSGELIPN-----LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK 179 (590)
T ss_pred ECCCCCCHHHHHHHHhCCccCC-----CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence 6999999999999999999987 79987 899875321 1235666665433332 29
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCC
Q 008843 60 VRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTG 139 (551)
Q Consensus 60 V~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsG 139 (551)
|+|++... +..++++++++.+||.+..|+ .+++|||||||||+||++|+.+|++++|||||++
T Consensus 180 v~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~-----~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~ 242 (590)
T PRK13409 180 VRELLKKV------------DERGKLDEVVERLGLENILDR-----DISELSGGELQRVAIAAALLRDADFYFFDEPTSY 242 (590)
T ss_pred HHHHHHhh------------hHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 99998631 123568899999999765554 5668999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCC
Q 008843 140 LDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEG 186 (551)
Q Consensus 140 LD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 186 (551)
||+.++..+.+.|+++++ |+|||+++|++. .+...+|++++|++|
T Consensus 243 LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 243 LDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred CCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999988 999999999964 678889999999764
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=8.7e-29 Score=278.46 Aligned_cols=166 Identities=30% Similarity=0.396 Sum_probs=137.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||||+|+|..+|+ +|+|.+ |.+ .++||++|+. .+++.+||.|++.+.... . ...
T Consensus 351 ~G~NGsGKSTLlk~l~G~~~p~-----~G~i~~-~~~-----~~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~-- 414 (635)
T PRK11147 351 IGPNGCGKTTLLKLMLGQLQAD-----SGRIHC-GTK-----LEVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN-- 414 (635)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----CcEEEE-CCC-----cEEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--
Confidence 6999999999999999999887 899988 432 2599999985 688999999999875321 1 011
Q ss_pred HHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 80 ERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
.....+.++++.+++. +..+ ..++.|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++
T Consensus 415 ~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--- 486 (635)
T PRK11147 415 GRPRHVLGYLQDFLFHPKRAM-----TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--- 486 (635)
T ss_pred chHHHHHHHHHhcCCCHHHHh-----ChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---
Confidence 1234577889999984 2333 456789999999999999999999999999999999999999999999886
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEc-CCeEEEe
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLT-EGKLVYA 191 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~-~G~iv~~ 191 (551)
+.|||++|||. ..+...||++++++ +|++..+
T Consensus 487 ~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 487 QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEc
Confidence 45999999995 57788899999997 8998654
No 345
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.96 E-value=7.1e-29 Score=279.80 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=132.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|+.+++ +|+|.+++ +.+++||+|++.+++. |++||+.+........ ....
T Consensus 484 vG~nGsGKSTLl~lL~Gl~~~~-----~G~i~~~~------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~ 549 (659)
T TIGR00954 484 CGPNGCGKSSLFRILGELWPVY-----GGRLTKPA------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGL 549 (659)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCeEeecC------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCC
Confidence 5999999999999999998876 78988764 3469999999998887 9999998754221000 0011
Q ss_pred HHHHHHHHHHHcCCCcccCcccc----CCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVG----DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
.++.++++++.+|+.+..++..| ....+.||||||||++|||+|+++|++++|||||+|||+.++..+.+.+++
T Consensus 550 ~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~-- 627 (659)
T TIGR00954 550 SDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE-- 627 (659)
T ss_pred CHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--
Confidence 23457788999999765443221 113578999999999999999999999999999999999999999998876
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
.|+|+|+++|+++ . ...+|++++|+
T Consensus 628 -~~~tvI~isH~~~-~-~~~~d~il~l~ 652 (659)
T TIGR00954 628 -FGITLFSVSHRKS-L-WKYHEYLLYMD 652 (659)
T ss_pred -cCCEEEEEeCchH-H-HHhCCEEEEEe
Confidence 3899999999975 3 46799999996
No 346
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.6e-29 Score=228.67 Aligned_cols=155 Identities=28% Similarity=0.395 Sum_probs=135.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc----ceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA----YKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~----~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
.||||||||||||+|+|+.+|+ +|+|.++|.+++..+ +.+-|+-..+.+-+.+||.|||.|-......
T Consensus 34 ~G~NG~GKTtLLRilaGLl~p~-----~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--- 105 (209)
T COG4133 34 TGPNGAGKTTLLRILAGLLRPD-----AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS--- 105 (209)
T ss_pred ECCCCCcHHHHHHHHHcccCCC-----CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC---
Confidence 3999999999999999999998 899999999887643 3367888888999999999999998776432
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
.....+.+.++.+||....|.+ ++.||-||||||+|||-+++.+++.+||||+++||......+-.++..-+
T Consensus 106 ---~~~~~i~~Al~~vgL~g~~dlp-----~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~ 177 (209)
T COG4133 106 ---GNAATIWEALAQVGLAGLEDLP-----VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA 177 (209)
T ss_pred ---CchhhHHHHHHHcCcccccccc-----hhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh
Confidence 1134578899999997766654 56899999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCch
Q 008843 157 QDGHTVICSIHQPRG 171 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~ 171 (551)
.+|..||.+||||..
T Consensus 178 ~~GGiVllttHq~l~ 192 (209)
T COG4133 178 AQGGIVLLTTHQPLP 192 (209)
T ss_pred cCCCEEEEecCCccC
Confidence 999999999999875
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=1.7e-28 Score=225.22 Aligned_cols=113 Identities=38% Similarity=0.561 Sum_probs=104.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|..++. +|+|.++|+ +.++|++|
T Consensus 32 ~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~~~------~~i~~~~~------------------------------ 70 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGELEPD-----EGIVTWGST------VKIGYFEQ------------------------------ 70 (144)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----ceEEEECCe------EEEEEEcc------------------------------
Confidence 5999999999999999999887 899999985 46899998
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
||+||+||++|||+|+.+|+++++||||+|||+.++..+.+.|+++ ++
T Consensus 71 -----------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~ 118 (144)
T cd03221 71 -----------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PG 118 (144)
T ss_pred -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CC
Confidence 9999999999999999999999999999999999999999999987 47
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
|+++++|++. ++...+|++++|++|+
T Consensus 119 til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 119 TVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 9999999964 6778899999999885
No 348
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=4.7e-28 Score=222.41 Aligned_cols=185 Identities=26% Similarity=0.396 Sum_probs=161.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCC--CCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED--LFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+|.||||||||.|+|+|..+|+ +|+|.+||+++.-. .++|-+++||+ .+.|.+.+.+-|....++ .
T Consensus 45 IG~NGSGKSTLakMlaGmi~PT-----sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~ 117 (267)
T COG4167 45 IGENGSGKSTLAKMLAGMIEPT-----SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--N 117 (267)
T ss_pred EccCCCcHhHHHHHHhcccCCC-----CceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh--c
Confidence 6999999999999999999998 89999999987532 35689999997 577778888877766543 4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
..+..+.+++++.+.|+.+||-+. ..+-+++-||-||||||++||||+.+|+|++.||...+||...+.+++++.-
T Consensus 118 T~~~~~~R~~~i~~TL~~VGL~Pd----han~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L 193 (267)
T COG4167 118 TDLEPEQRRKQIFETLRMVGLLPD----HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLML 193 (267)
T ss_pred ccCChHHHHHHHHHHHHHhccCcc----ccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence 567788889999999999999532 2345788999999999999999999999999999999999999999999999
Q ss_pred HHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 154 QLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 154 ~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
++.+ .|.+-|.++.+. ..+.+..|+|++|++|++++.|++.++
T Consensus 194 eLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~~v 237 (267)
T COG4167 194 ELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADV 237 (267)
T ss_pred HHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCChhhh
Confidence 9984 599999999885 688999999999999999999998873
No 349
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.5e-30 Score=263.50 Aligned_cols=181 Identities=27% Similarity=0.418 Sum_probs=150.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||+||||+||+|-...+-+ +|.|.+||+++..- +..||.||||..+|++ |+..|+.|+.. .
T Consensus 570 VG~SGaGKSTimRlLfRffdv~-----sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~-----~ 638 (790)
T KOG0056|consen 570 VGPSGAGKSTIMRLLFRFFDVN-----SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKP-----S 638 (790)
T ss_pred ECCCCCchhHHHHHHHHHhhcc-----CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCC-----C
Confidence 6999999999999999998766 89999999998653 3459999999999987 99999988632 2
Q ss_pred CCHHHHHHHHH--HH-HHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 76 LSVEERDEYVN--SL-LFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 76 ~~~~~~~~~v~--~~-l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.+.+|..+.++ .+ =+.++..+..+|.||++ .-.|||||||||+|||+++++|.+++|||.||+||..+.+.|-..|
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGER-GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER-GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc-ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 23444433222 11 23477888889999975 4469999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+++. ++|.|++.|..+ .+.+ +|.|+++++|+|++.|.-++
T Consensus 718 ~rlca-~RTtIVvAHRLS-Tivn-AD~ILvi~~G~IvErG~Hee 758 (790)
T KOG0056|consen 718 ARLCA-NRTTIVVAHRLS-TIVN-ADLILVISNGRIVERGRHEE 758 (790)
T ss_pred HHHhc-CCceEEEeeeeh-heec-ccEEEEEeCCeEeecCcHHH
Confidence 99986 789999999975 4444 69999999999999997654
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=2.6e-28 Score=275.85 Aligned_cols=169 Identities=25% Similarity=0.416 Sum_probs=133.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||||+|+|..+|+ +|+|.+++. .++||++|+. .+.+++.++.........+. ..
T Consensus 541 vG~NGsGKSTLLk~L~Gll~p~-----~G~I~~~~~------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~-~~--- 603 (718)
T PLN03073 541 VGPNGIGKSTILKLISGELQPS-----SGTVFRSAK------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPG-VP--- 603 (718)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----CceEEECCc------eeEEEEeccc--cccCCcchhHHHHHHHhcCC-CC---
Confidence 6999999999999999999887 799988652 4699999975 34566666643322111111 11
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
++.++++++.+|+.+ ...+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++. . .
T Consensus 604 -~~~i~~~L~~~gl~~----~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-g 675 (718)
T PLN03073 604 -EQKLRAHLGSFGVTG----NLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-G 675 (718)
T ss_pred -HHHHHHHHHHCCCCh----HHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-C
Confidence 345788999999952 1123457789999999999999999999999999999999999999998888765 3 4
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCCeEE-EecCCC
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPAR 195 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~ 195 (551)
|||++||++. .+...||++++|++|+++ +.|+.+
T Consensus 676 tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 676 GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHH
Confidence 9999999964 678889999999999998 667544
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=1.4e-28 Score=298.90 Aligned_cols=168 Identities=26% Similarity=0.424 Sum_probs=139.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCccee-eEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLS-GLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~-G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+++|.|..++. + |+|.+. .+++||+|++.+++. |++|||.|+... +
T Consensus 649 vG~sGSGKSTLl~lLlG~~~~~-----~GG~I~l~--------~~Iayv~Q~p~Lfng-TIreNI~fg~~~------d-- 706 (1622)
T PLN03130 649 VGSTGEGKTSLISAMLGELPPR-----SDASVVIR--------GTVAYVPQVSWIFNA-TVRDNILFGSPF------D-- 706 (1622)
T ss_pred ECCCCCCHHHHHHHHHHhhccC-----CCceEEEc--------CeEEEEcCccccCCC-CHHHHHhCCCcc------c--
Confidence 5999999999999999999886 7 888753 469999999999986 999999997421 2
Q ss_pred HHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH-H
Q 008843 80 ERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-A 151 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~-~ 151 (551)
+++.+++++..+|. +..+|.+|++ ..+||||||||++||||+.++|+|++||||||+||+.++.++++ .
T Consensus 707 --~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~ 783 (1622)
T PLN03130 707 --PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC 783 (1622)
T ss_pred --HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHH
Confidence 23344555555443 3457888874 67899999999999999999999999999999999999998875 5
Q ss_pred HHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.+. +|+|+|++||++. ....+|+|++|++|++++.|+.++
T Consensus 784 l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 784 IKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred hhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHH
Confidence 55543 5899999999974 456689999999999999998766
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=1.8e-28 Score=297.56 Aligned_cols=169 Identities=26% Similarity=0.386 Sum_probs=136.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|.|..++. +|.+. ..+..++||+|++.+|+. |++|||.|+.. .++
T Consensus 649 vG~sGSGKSTLl~lLlG~~~~~-----~G~i~-------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~-- 707 (1495)
T PLN03232 649 VGGTGEGKTSLISAMLGELSHA-----ETSSV-------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FES-- 707 (1495)
T ss_pred ECCCCCcHHHHHHHHhCCCccc-----CCCEE-------EecCcEEEEcCccccccc-cHHHHhhcCCc------cCH--
Confidence 5999999999999999999886 55442 123469999999999986 99999999742 122
Q ss_pred HHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH-H
Q 008843 81 RDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-L 152 (551)
Q Consensus 81 ~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~-L 152 (551)
++.+++++..+| .+..||.+|++ ..+||||||||++||||+.++|+|++||||||+||+.++.++++. +
T Consensus 708 --e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l 784 (1495)
T PLN03232 708 --ERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM 784 (1495)
T ss_pred --HHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 234444444443 34457888874 678999999999999999999999999999999999999999765 5
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.. .+|+|+|++||+++ ....+|+|++|++|++++.|+.++
T Consensus 785 ~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 785 KDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred hhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHH
Confidence 543 36899999999975 456699999999999999998765
No 353
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.5e-28 Score=219.07 Aligned_cols=158 Identities=27% Similarity=0.394 Sum_probs=136.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
|||||||||||+..+.|.+.+. ..++|++.+|++.++.. .+.+|.++||+.+||+++|.+||.|+.. ....
T Consensus 34 MGPSGcGKSTLls~~~G~La~~--F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp----~~~K 107 (213)
T COG4136 34 MGPSGCGKSTLLSWMIGALAGQ--FSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALP----ATLK 107 (213)
T ss_pred ECCCCccHHHHHHHHHhhcccC--cceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecC----cccc
Confidence 7999999999999999998765 46799999999988653 4679999999999999999999998753 3344
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH-HH
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ-LA 156 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~-la 156 (551)
.+.+++.++..+++.||....+ +.+..||||||-||++-|+|+..|+.++||||+|.||..-+.++.+..-. ++
T Consensus 108 G~aRr~~a~aAL~~~gL~g~f~-----~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r 182 (213)
T COG4136 108 GNARRNAANAALERSGLDGAFH-----QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR 182 (213)
T ss_pred cHHHHhhHHHHHHHhccchhhh-----cChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4567778999999999976554 35778999999999999999999999999999999999999999887644 55
Q ss_pred hCCCEEEEEecCC
Q 008843 157 QDGHTVICSIHQP 169 (551)
Q Consensus 157 ~~g~tvi~~~H~~ 169 (551)
..|..++.+|||.
T Consensus 183 ~agiPtv~VTHD~ 195 (213)
T COG4136 183 AAGIPTVQVTHDL 195 (213)
T ss_pred hcCCCeEEEeccc
Confidence 6799999999995
No 354
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.7e-28 Score=272.24 Aligned_cols=174 Identities=26% Similarity=0.323 Sum_probs=133.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHH------------
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAA------------ 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~------------ 68 (551)
+||||||||||||+|+|..+|+ +|+|.++|.. +++|++|+...+. .|+.+.+.-..
T Consensus 33 vG~NGsGKSTLLkiL~G~~~pd-----~G~I~~~~~~------~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~ 100 (638)
T PRK10636 33 VGKNGCGKSTLLALLKNEISAD-----GGSYTFPGNW------QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHD 100 (638)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEecCCC------EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHH
Confidence 6999999999999999998887 8999998742 4889998653332 46555442110
Q ss_pred -----------HcCC-CCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeC
Q 008843 69 -----------ELQL-PEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADE 135 (551)
Q Consensus 69 -----------~l~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDE 135 (551)
.+.. .......+.+.+++++++.+|+. +..| ..+..|||||||||+||++|+.+|++|||||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~-----~~~~~LSgGerqRv~LA~aL~~~P~lLLLDE 175 (638)
T PRK10636 101 ANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE-----RPVSDFSGGWRMRLNLAQALICRSDLLLLDE 175 (638)
T ss_pred HhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc-----CchhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 0000 00000112345788999999995 3333 4567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEE-EecCCC
Q 008843 136 PTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPAR 195 (551)
Q Consensus 136 PtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~ 195 (551)
||+|||+.+...+.+.|+++ +.|||+++||+ ..+...||++++|++|+++ |.|+.+
T Consensus 176 Ptn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 176 PTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYS 232 (638)
T ss_pred CCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHH
Confidence 99999999999999998875 56999999995 5778889999999999996 556443
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=9.2e-28 Score=231.66 Aligned_cols=182 Identities=27% Similarity=0.375 Sum_probs=159.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|+||||||||||+|+|.++|+ +|+|.++|+-........| +-|.+|.+||+.+.+.+. .+++++
T Consensus 59 iG~NGaGKSTLlkliaGi~~Pt-----~G~v~v~G~v~~li~lg~G-------f~pelTGreNi~l~~~~~---G~~~~e 123 (249)
T COG1134 59 IGHNGAGKSTLLKLIAGIYKPT-----SGKVKVTGKVAPLIELGAG-------FDPELTGRENIYLRGLIL---GLTRKE 123 (249)
T ss_pred ECCCCCcHHHHHHHHhCccCCC-----CceEEEcceEehhhhcccC-------CCcccchHHHHHHHHHHh---CccHHH
Confidence 6999999999999999999998 8999999985432222233 456799999999987653 357889
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
.+++++++++.-+|.+..|. +++.+|-||+-|++.|.+...+|++|++||-.+--|+.-+++-.+.++++.++++
T Consensus 124 i~~~~~eIieFaELG~fi~~-----PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~ 198 (249)
T COG1134 124 IDEKVDEIIEFAELGDFIDQ-----PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK 198 (249)
T ss_pred HHHHHHHHHHHHHHHHHhhC-----chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999776655 5678999999999999999999999999999999999999999999999988889
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhh
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSR 204 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~ 204 (551)
|+|+++|++ ..+.+.||++++|++|++.+.|.+++ +.++++.
T Consensus 199 tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~-vi~~Y~~ 240 (249)
T COG1134 199 TIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEE-VIPAYEE 240 (249)
T ss_pred EEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHH-HHHHHHH
Confidence 999999996 58999999999999999999999998 6665544
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.95 E-value=9.7e-28 Score=290.77 Aligned_cols=170 Identities=24% Similarity=0.386 Sum_probs=137.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|||||||||||++|+|..++. +|+|.++| +++||+|++.+++. ||+||+.|+... ..+.
T Consensus 458 ~G~~GsGKSTLl~~l~G~~~~~-----~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eNI~~g~~~------~~~~ 517 (1490)
T TIGR01271 458 AGSTGSGKSSLLMMIMGELEPS-----EGKIKHSG--------RISFSPQTSWIMPG-TIKDNIIFGLSY------DEYR 517 (1490)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECC--------EEEEEeCCCccCCc-cHHHHHHhcccc------chHH
Confidence 5999999999999999999987 89999988 48999999999886 999999987421 1111
Q ss_pred HHHH-----HHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH-HHH
Q 008843 81 RDEY-----VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-LRQ 154 (551)
Q Consensus 81 ~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~-L~~ 154 (551)
.++. .++.++.+. +..+|.+|+ .+..||||||||++||||++.+|++++|||||+|||+.++.++++. +++
T Consensus 518 ~~~~~~~~~L~~~l~~l~--~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~ 594 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFP--EKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594 (1490)
T ss_pred HHHHHHHHhHHHHHHhcc--ccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1111 122233322 223466765 4789999999999999999999999999999999999999999974 666
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+. +|+|+|++||++. .+ ..+|++++|++|+++..|+.++
T Consensus 595 ~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 595 LM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred Hh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHH
Confidence 65 4899999999985 34 4599999999999999998766
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=5.4e-28 Score=293.73 Aligned_cols=173 Identities=25% Similarity=0.415 Sum_probs=138.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|..++. +|+|.++| +++||+|++.+++ .||+||+.|+... ..++
T Consensus 670 vG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g--------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------~~~~ 729 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMDKV-----EGHVHMKG--------SVAYVPQQAWIQN-DSLRENILFGKAL------NEKY 729 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCccC-----CcEEEECC--------EEEEEcCCccccC-CcHHHHhhcCCcc------CHHH
Confidence 5999999999999999999887 89999987 4899999998876 5999999986421 1222
Q ss_pred HHHHHH--HHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-
Q 008843 81 RDEYVN--SLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA- 156 (551)
Q Consensus 81 ~~~~v~--~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la- 156 (551)
.++.++ ++.+.++.. +..+|.+|+ .+.+||||||||++||||+..+|++++||||||+||+.++..+++.+.+..
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~ 808 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG 808 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 222111 122333332 234566765 478899999999999999999999999999999999999999999987542
Q ss_pred -hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 -QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 -~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+|+|+|++||++. .+ ..+|++++|++|+++..|+.++
T Consensus 809 ~~~~~tvIlvTH~~~-~l-~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 809 VLKNKTRILVTHGIS-YL-PQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred hhcCCEEEEEeCChh-hh-hhCCEEEEecCCeEEeeCCHHH
Confidence 35799999999975 34 4489999999999999998766
No 358
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=1.5e-27 Score=268.50 Aligned_cols=173 Identities=28% Similarity=0.383 Sum_probs=132.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHH-------------
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLA------------- 67 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~------------- 67 (551)
+||||||||||||+|+|..+|+ +|+|.++|.. .++|++|++......+|.+++..+
T Consensus 35 vG~NGsGKSTLLriiaG~~~p~-----~G~I~~~~~~------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 103 (635)
T PRK11147 35 VGRNGAGKSTLMKILNGEVLLD-----DGRIIYEQDL------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHD 103 (635)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC-----CeEEEeCCCC------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence 6999999999999999999887 8999997632 367888765433334666554211
Q ss_pred -----------------HHcCC-CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCc
Q 008843 68 -----------------AELQL-PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS 129 (551)
Q Consensus 68 -----------------~~l~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~ 129 (551)
..+.. .......+.+.+++++++.+|+.. ++.+..|||||||||+||++|+.+|+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-------~~~~~~LSgGekqRv~LAraL~~~P~ 176 (635)
T PRK11147 104 ISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP-------DAALSSLSGGWLRKAALGRALVSNPD 176 (635)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC-------CCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 00000 000001123457889999999952 45677899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEE-EecCCC
Q 008843 130 VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPAR 195 (551)
Q Consensus 130 illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~ 195 (551)
+|||||||+|||+.++..+.+.|+++ +.|||+++|++ ..+...+|++++|++|+++ +.|+.+
T Consensus 177 lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~ 239 (635)
T PRK11147 177 VLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYD 239 (635)
T ss_pred EEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHH
Confidence 99999999999999999999999987 35999999996 4678889999999999997 456543
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2e-27 Score=221.03 Aligned_cols=122 Identities=41% Similarity=0.737 Sum_probs=110.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|.+++. +|+|.++|.+.... ...++|++|
T Consensus 31 ~G~nGsGKStll~~l~g~~~~~-----~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------------------- 80 (157)
T cd00267 31 VGPNGSGKSTLLRAIAGLLKPT-----SGEILIDGKDIAKLPLEELRRRIGYVPQ------------------------- 80 (157)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ccEEEECCEEcccCCHHHHHhceEEEee-------------------------
Confidence 5999999999999999999876 89999999876542 245888888
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
|||||+||++||++++.+|++++|||||+|||..++..+.+.++++
T Consensus 81 ----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~ 126 (157)
T cd00267 81 ----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126 (157)
T ss_pred ----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
.+.++|+++++|++. .+...+|+++++++|+
T Consensus 127 ~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 127 AEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 877899999999964 6677789999999875
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.3e-27 Score=215.24 Aligned_cols=181 Identities=26% Similarity=0.410 Sum_probs=141.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE---eCC-----cc-cc-----eEEEEccCC--CCCCCCC----H
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSS-----NK-AY-----KFAYVRQED--LFFSQLT----V 60 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~---~~~-----~~-~~-----~i~yv~Q~~--~l~~~lT----V 60 (551)
+|+|||||||||++|++++.|+ .|+|.+... +.+ +. ++ .-|+|.|++ .+-...+ +
T Consensus 38 VGESGSGKtTLL~~is~rl~p~-----~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni 112 (258)
T COG4107 38 VGESGSGKTTLLKCISGRLTPD-----AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI 112 (258)
T ss_pred EecCCCcHHhHHHHHhcccCCC-----CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence 5999999999999999999998 799988543 221 11 11 269999986 3333333 3
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCC
Q 008843 61 RETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGL 140 (551)
Q Consensus 61 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGL 140 (551)
.|-+.-.. .| .....++.+.++|+++.+... --+..++..|||++||+.|||.|++.|++.|+||||-||
T Consensus 113 GERlma~G-~R-----HYG~iR~~a~~WL~~VEI~~~----RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGL 182 (258)
T COG4107 113 GERLMAIG-AR-----HYGNIRAEAQDWLEEVEIDLD----RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 182 (258)
T ss_pred chhHHhhh-hh-----hhhhHHHHHHHHHHhcccCcc----cccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCc
Confidence 33332111 11 123455667889999988532 235678999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 141 DAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 141 D~~~~~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
|...+..++++++.+.. -|.+++++|||. ..+..++||+++|++|++++.|-++.+
T Consensus 183 DVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 183 DVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred chhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEecccccccc
Confidence 99999999999999984 588999999996 466778999999999999999988773
No 361
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.1e-28 Score=249.94 Aligned_cols=179 Identities=26% Similarity=0.463 Sum_probs=148.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||+||||++++|-..++++ +|.|.+||+++... ++.||.||||..+|.+ |...|+.++.. .
T Consensus 295 Vg~SG~gKsTI~rllfRFyD~~-----sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~ 363 (497)
T COG5265 295 VGESGAGKSTILRLLFRFYDVN-----SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----D 363 (497)
T ss_pred EeCCCCcHHHHHHHHHHHhCCc-----CceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc-----c
Confidence 5999999999999999999987 89999999987653 2449999999999987 99999988642 2
Q ss_pred CCHHHHHHH-----HHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDEY-----VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.+.+|..+. +.+.++. +.+..|+.||.+ .=.|||||||||+|||+++.+|+||++||.||.||+.+.+++..
T Consensus 364 at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vger-glklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~ 440 (497)
T COG5265 364 ATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGER-GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440 (497)
T ss_pred ccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchh-eeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence 344444332 2234443 345668999875 34699999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|++.+ .|+|.+++.|..+ .+.. +|.|++|++|++++.|.-++
T Consensus 441 ~l~~~~-~~rttlviahrls-ti~~-adeiivl~~g~i~erg~h~~ 483 (497)
T COG5265 441 ALREVS-AGRTTLVIAHRLS-TIID-ADEIIVLDNGRIVERGTHEE 483 (497)
T ss_pred HHHHHh-CCCeEEEEeehhh-hccC-CceEEEeeCCEEEecCcHHH
Confidence 999987 5899999999975 4444 69999999999999997655
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.94 E-value=3.1e-27 Score=286.79 Aligned_cols=169 Identities=33% Similarity=0.473 Sum_probs=133.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|||||||||||++|+|..++. +|+|.++ +++|||+|++.+++ .||+||+.|+... ..+.
T Consensus 692 iG~nGsGKSTLL~~i~G~~~~~-----~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~enI~~~~~~------~~~~ 751 (1560)
T PTZ00243 692 LGATGSGKSTLLQSLLSQFEIS-----EGRVWAE--------RSIAYVPQQAWIMN-ATVRGNILFFDEE------DAAR 751 (1560)
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CcEEEEC--------CeEEEEeCCCccCC-CcHHHHHHcCChh------hHHH
Confidence 5999999999999999999887 7999763 46999999998875 6999999985321 1111
Q ss_pred HH-----HHHHHHHHHc--CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 81 RD-----EYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 81 ~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
.+ ...++.++.+ |+ ++.+|. .+..||||||||++|||||+.+|++++|||||++||+.++..+++.+.
T Consensus 752 ~~~~~~~~~l~~~l~~l~~g~----~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~ 826 (1560)
T PTZ00243 752 LADAVRVSQLEADLAQLGGGL----ETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826 (1560)
T ss_pred HHHHHHHhhhHHHHHHhhccc----hHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 11 1223445555 44 355544 578999999999999999999999999999999999999999987543
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
....+|+|+|++||++. .+ ..+|++++|++|++++.|+.++
T Consensus 827 ~~~~~~~TvIlvTH~~~-~~-~~ad~ii~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 827 LGALAGKTRVLATHQVH-VV-PRADYVVALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHhhCCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEecCHHH
Confidence 22335899999999975 34 5699999999999999998765
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=6.4e-27 Score=254.39 Aligned_cols=172 Identities=31% Similarity=0.417 Sum_probs=139.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcC---------
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQ--------- 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~--------- 71 (551)
+|+||||||||||+|+|...|+ +|+|...+ ..+++|++|+....+..||.+.+.-+..-.
T Consensus 35 vG~NGaGKSTLLkilaG~~~~~-----~G~i~~~~------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~ 103 (530)
T COG0488 35 VGRNGAGKSTLLKILAGELEPD-----SGEVTRPK------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEE 103 (530)
T ss_pred ECCCCCCHHHHHHHHcCCCcCC-----CCeEeecC------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHH
Confidence 6999999999999999999887 79887642 246999999999999999999886543210
Q ss_pred ----CCCC--------------CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEE
Q 008843 72 ----LPEI--------------LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYA 133 (551)
Q Consensus 72 ----~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illL 133 (551)
.+.. ....+.+.+++.++..+|+.+. ++.++.||||||+||+||++|+.+|++|+|
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~------~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLL 177 (530)
T COG0488 104 AYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE------DRPVSSLSGGWRRRVALARALLEEPDLLLL 177 (530)
T ss_pred HHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc------cCchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0000 0001123567889999998644 345678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEE-EecC
Q 008843 134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGP 193 (551)
Q Consensus 134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~ 193 (551)
||||++||..+...+-+.|++. .| |+|++||| +..+-..|++|+-++.|++. |.|.
T Consensus 178 DEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 178 DEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred cCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecCC
Confidence 9999999999999999999864 46 99999999 78899999999999999875 4453
No 364
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=3.3e-26 Score=229.11 Aligned_cols=135 Identities=28% Similarity=0.344 Sum_probs=112.9
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHH
Q 008843 45 FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACEL 124 (551)
Q Consensus 45 i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L 124 (551)
+.|..++...+..+||.|++.|...+. ..+++.+.++.+||.+. ..++.++.||||||||+.||++|
T Consensus 118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l----~l~~~~~~LSgGe~QRl~LAraL 184 (261)
T cd03271 118 VRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYI----KLGQPATTLSGGEAQRIKLAKEL 184 (261)
T ss_pred cCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchh----hhcCccccCCHHHHHHHHHHHHH
Confidence 345666666678899999999876542 12456789999999642 12446778999999999999999
Q ss_pred hhC---CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCC
Q 008843 125 IAS---PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPA 194 (551)
Q Consensus 125 ~~~---p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~ 194 (551)
+.+ |++++|||||+|||+..+..+.+.|++++++|.|||+++|++. .+ ..+|+++.| ++|++++.|++
T Consensus 185 ~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 185 SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred hcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 996 7999999999999999999999999999988999999999975 44 469999999 89999999874
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=3.6e-25 Score=218.29 Aligned_cols=101 Identities=26% Similarity=0.427 Sum_probs=89.3
Q ss_pred HHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 008843 86 NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163 (551)
Q Consensus 86 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p--~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi 163 (551)
.+.++.+||.+. ..+.++++||||||||++||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|+|
T Consensus 118 ~~~l~~~~l~~~----~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii 193 (226)
T cd03270 118 LGFLVDVGLGYL----TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL 193 (226)
T ss_pred HHHHHHCCCCcc----cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 468999999541 234567899999999999999999998 59999999999999999999999999988899999
Q ss_pred EEecCCchhHHhhcccEEEE------cCCeEEEec
Q 008843 164 CSIHQPRGSVYFKFDDIVLL------TEGKLVYAG 192 (551)
Q Consensus 164 ~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G 192 (551)
+++|++. .+ ..||++++| ++|+++++|
T Consensus 194 ~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 194 VVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999975 45 579999999 999999876
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.93 E-value=5.8e-26 Score=219.22 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=116.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCC----cceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPR----LHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~----~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|..++... ....|++.++|++.... .++++||+|++..+ |. ..
T Consensus 28 ~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----------~~--~~--- 92 (197)
T cd03278 28 VGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----------YS--II--- 92 (197)
T ss_pred ECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----------ee--EE---
Confidence 599999999999999998754311 12245677777765332 35699999998665 11 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHh----hCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~----~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
..++++++++. .+.. +..++.||||||||++||++|+ .+|+++++||||+|||+..+..+.+
T Consensus 93 ------~~~~~~~~l~~---~~~~-----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~ 158 (197)
T cd03278 93 ------SQGDVSEIIEA---PGKK-----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR 158 (197)
T ss_pred ------ehhhHHHHHhC---CCcc-----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 12356666666 2222 3456789999999999999997 4679999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
.|+++++ +.|||++||++. .+ ..+|+++.+.
T Consensus 159 ~l~~~~~-~~tiIiitH~~~-~~-~~~d~v~~~~ 189 (197)
T cd03278 159 LLKEFSK-ETQFIVITHRKG-TM-EAADRLYGVT 189 (197)
T ss_pred HHHHhcc-CCEEEEEECCHH-HH-hhcceEEEEE
Confidence 9999975 689999999975 44 5799999985
No 367
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=7e-27 Score=213.31 Aligned_cols=177 Identities=30% Similarity=0.424 Sum_probs=149.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|||||||||||-.++|+.+. +|+|.++|+++... .+..+|..|+..-...+-|.+++... .|
T Consensus 31 iGPNGaGKSTLLA~lAGm~~~------sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~----qP-- 98 (248)
T COG4138 31 VGPNGAGKSTLLARMAGMTSG------SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH----QP-- 98 (248)
T ss_pred ECCCCccHHHHHHHHhCCCCC------CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc----Cc--
Confidence 699999999999999999864 79999999998643 34578999988766678898887653 23
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhh-----CC--ceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA-----SP--SVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~-----~p--~illLDEPtsGLD~~~~~~i 148 (551)
..++...++++-..++|.+... +.+..|||||-|||-+|...+. || ++|+||||.++||.+....+
T Consensus 99 --~~~~a~~i~~i~~~L~l~DKL~-----Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL 171 (248)
T COG4138 99 --DKTRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL 171 (248)
T ss_pred --hHHHHHHHHHHHhhhcccchhh-----hhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence 3556677889999999965443 3567899999999999987764 44 69999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCc
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDE 197 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 197 (551)
-++|.+++.+|.+||++.||.+... ..+|++.+|++|++...|..+++
T Consensus 172 drll~~~c~~G~~vims~HDLNhTL-rhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 172 DRLLSALCQQGLAIVMSSHDLNHTL-RHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred HHHHHHHHhCCcEEEEeccchhhHH-HHHHHHHHHhcCeEEeecchhhh
Confidence 9999999999999999999987554 55799999999999999999885
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=5e-26 Score=206.19 Aligned_cols=116 Identities=46% Similarity=0.731 Sum_probs=102.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+||||||||+++|+|..++. +|+|.++|.++... +..++|++|++.+++.+||+|+
T Consensus 17 ~G~nGsGKStLl~~l~g~~~~~-----~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~------------ 79 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGLLPPD-----SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN------------ 79 (137)
T ss_dssp EESTTSSHHHHHHHHTTSSHES-----EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH------------
T ss_pred EccCCCccccceeeeccccccc-----ccccccccccccccccccccccccccccccccccccccccc------------
Confidence 5999999999999999999876 89999999998762 3459999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPts 138 (551)
..+++++++++.+++.+..++.++. ..+.||||||||++||++|+.+|++++|||||+
T Consensus 80 ----~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2345688999999998877776654 458999999999999999999999999999996
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=1.2e-23 Score=245.37 Aligned_cols=169 Identities=31% Similarity=0.484 Sum_probs=140.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||-|||||+||.+|.|..+.. +|+|.++|. ++||+|++-+++. |||||+.|+... . +
T Consensus 553 vG~vGsGKSSLL~AiLGEm~~~-----sG~v~v~gs--------iaYv~Q~pWI~ng-TvreNILFG~~~------d-~- 610 (1381)
T KOG0054|consen 553 VGPVGSGKSSLLSAILGEMPKL-----SGSVAVNGS--------VAYVPQQPWIQNG-TVRENILFGSPY------D-E- 610 (1381)
T ss_pred ECCCCCCHHHHHHHHhcCcccc-----cceEEEcCe--------EEEeccccHhhCC-cHHHhhhcCccc------c-H-
Confidence 5999999999999999998865 899999887 8999999998886 999999998643 1 2
Q ss_pred HHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
++-+++++...|+ +.-.|.+|+ +.-+||||||||+++|||+-+|++|++||.|.|++|+....++++..-
T Consensus 611 --~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci 687 (1381)
T KOG0054|consen 611 --ERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECI 687 (1381)
T ss_pred --HHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHH
Confidence 2333444444332 345577876 566899999999999999999999999999999999999999987544
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+-.-+++|+|++|||. +....+|.|++|++|++...|+.++
T Consensus 688 ~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 688 RGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred HhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHH
Confidence 4444689999999984 4566789999999999999999887
No 370
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=7.3e-26 Score=226.77 Aligned_cols=176 Identities=15% Similarity=0.188 Sum_probs=130.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE-eC-C------cccceEEEEccCC---------CCCCCCCHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PS-S------NKAYKFAYVRQED---------LFFSQLTVRET 63 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~-~~-~------~~~~~i~yv~Q~~---------~l~~~lTV~e~ 63 (551)
+||||||||||+++|++.+.+.. .|++...|. ++ . ....++++++|++ .+.+.+||.++
T Consensus 31 vG~NGsGKStll~Ai~~ll~~~~----~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~ 106 (251)
T cd03273 31 TGLNGSGKSNILDAICFVLGITN----LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQ 106 (251)
T ss_pred ECCCCCCHHHHHHHHHHHhcccc----cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEE
Confidence 69999999999999999986541 356666554 21 1 1123689999984 34667899988
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCc---------------cccCCcCCCCChHHhHHHHHHHHHh---
Q 008843 64 LSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADS---------------NVGDAKVRGISGGEKKRLSLACELI--- 125 (551)
Q Consensus 64 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSGGerqRvsIa~~L~--- 125 (551)
+......+.. ...+....+.+.+.++.+|+..-... ...+..++.||||||||++||++|+
T Consensus 107 I~~~~~~~~~-in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~ 185 (251)
T cd03273 107 IVLGGTNKYL-INGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL 185 (251)
T ss_pred EEcCCceEEE-ECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence 8654322110 00122334678899999998511001 1234567899999999999999998
Q ss_pred -hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 126 -ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 126 -~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
.+|+++++||||+|||+..+..+.+.|++++ +|.|+|+++|++ ++...+|+++-+.
T Consensus 186 ~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 186 FKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 488999999994 6777799998874
No 371
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=1.6e-25 Score=253.22 Aligned_cols=106 Identities=27% Similarity=0.334 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 008843 82 DEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT 161 (551)
Q Consensus 82 ~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~t 161 (551)
++++.++++.+|+.+ ...++.++.|||||||||+||++|+.+|++|+|||||++||+.+...+.+.|+++ +.|
T Consensus 321 ~~r~~~~L~~lgl~~----~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 321 EARAASILAGLSFTP----EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHHCCCCh----HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 455667788888842 1123456789999999999999999999999999999999999999999999886 689
Q ss_pred EEEEecCCchhHHhhcccEEEEcCCeEE-EecCCC
Q 008843 162 VICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPAR 195 (551)
Q Consensus 162 vi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~ 195 (551)
||+++|+. ..+...||++++|++|++. |.|+.+
T Consensus 394 viivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 394 FIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYD 427 (718)
T ss_pred EEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 99999995 5678889999999999996 566543
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3.2e-24 Score=228.32 Aligned_cols=185 Identities=24% Similarity=0.410 Sum_probs=155.3
Q ss_pred CCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc------ceEEEEccC---CCCCCCCCHHHHHHHHHHcCC
Q 008843 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA------YKFAYVRQE---DLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~------~~i~yv~Q~---~~l~~~lTV~e~l~~~~~l~~ 72 (551)
|-=|||+|-|+++|.|..++. +|+|.+||+++.... ..++|||.| +.++..++|+||+.++...+.
T Consensus 292 GLvGaGRTEl~~~lfG~~~~~-----~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~ 366 (500)
T COG1129 292 GLVGAGRTELARALFGARPAS-----SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF 366 (500)
T ss_pred ccccCCHHHHHHHHhCCCcCC-----CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh
Confidence 556999999999999977665 899999999876442 349999987 478999999999998832221
Q ss_pred C-C-CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 73 P-E-ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 73 ~-~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
. . ..+....++.+++..+.|++. +.-.+..+..||||.+|||.||+.|..+|++|+|||||.|.|..+..+|.+
T Consensus 367 ~~~~~i~~~~e~~~~~~~~~~l~Ik----~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~ 442 (500)
T COG1129 367 SRRGLIDRRKERALAERYIRRLRIK----TPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR 442 (500)
T ss_pred ccccccChHHHHHHHHHHHHhcCcc----cCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHH
Confidence 1 1 244555567789999999984 333346788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++++|++||+++.+. +|+..+||||++|++|+++..-+.++
T Consensus 443 li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 443 LIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999995 68999999999999999997555443
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.1e-25 Score=200.96 Aligned_cols=171 Identities=24% Similarity=0.305 Sum_probs=138.7
Q ss_pred CCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE--eCC-----cc------cceEEEEccCCCCCCCCCHHHHHHHHH
Q 008843 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK--PSS-----NK------AYKFAYVRQEDLFFSQLTVRETLSLAA 68 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~--~~~-----~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~ 68 (551)
||||||||||||+|-|-+.++ +|+|.+.-. -++ +. ++.+|||.|.-...|.....|...-..
T Consensus 44 G~SG~GKStllr~LYaNY~~d-----~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePl 118 (235)
T COG4778 44 GPSGSGKSTLLRSLYANYLPD-----EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL 118 (235)
T ss_pred CCCCCcHHHHHHHHHhccCCC-----CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHH
Confidence 999999999999999999988 899887432 221 11 234899999988888877666655443
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.-+ ....+..+.++.+++.+|++.+.. -+-.+...||||+|||.|||.++.|-+||+|||||+.||..++..+
T Consensus 119 l~~---gv~~~~a~~~a~~Ll~rLnlperL----W~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vV 191 (235)
T COG4778 119 LAR---GVPREVARAKAADLLTRLNLPERL----WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191 (235)
T ss_pred HHc---CCCHHHHHHHHHHHHHHcCCCHHH----hcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHH
Confidence 322 345677778899999999996432 3345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
++++++-...|..+|=+-|| .+.-...+||++-+..
T Consensus 192 veli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 192 VELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred HHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 99999988899999999999 4455667899987753
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=4.8e-25 Score=219.53 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=117.6
Q ss_pred CCCCCCcHHHHHHHHHcC----------------cCCCCC-cceee--EEEECCEe----CCcc----cceEEEEccCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQ----------------LMASPR-LHLSG--LLEVNGKP----SSNK----AYKFAYVRQEDL 53 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~----------------~~~~~~-~~~~G--~i~i~g~~----~~~~----~~~i~yv~Q~~~ 53 (551)
+||||||||||+++|++. ..++.+ ...++ ++.+++.+ .... .+.++|++|+..
T Consensus 29 ~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~ 108 (243)
T cd03272 29 VGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYF 108 (243)
T ss_pred ECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEE
Confidence 699999999999999843 222210 01122 44555421 1111 245899999887
Q ss_pred CCC-CCCHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhh----C
Q 008843 54 FFS-QLTVRETLSLAAELQLPEILSV-EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA----S 127 (551)
Q Consensus 54 l~~-~lTV~e~l~~~~~l~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~----~ 127 (551)
+++ ..|..|...+............ ...+.++ .+.+++.+.. +..++.||||||||++||++|+. +
T Consensus 109 l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~-----~~~~~~lS~G~~~r~~la~~l~~~~~~~ 180 (243)
T cd03272 109 LDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDE-----QQEMQQLSGGQKSLVALALIFAIQKCDP 180 (243)
T ss_pred ECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccc-----cccccccCHHHHHHHHHHHHHHHhccCC
Confidence 777 4677776666555433211000 0001222 2334443222 34567899999999999999974 5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 128 PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 128 p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
|+++++||||+|||+.++..+.+.|+++++ +.++|+++|++ ++...+|++++|.
T Consensus 181 ~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 181 APFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 899999999999999999999999999876 78888888874 5778999999984
No 375
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.91 E-value=1.7e-24 Score=210.24 Aligned_cols=152 Identities=25% Similarity=0.274 Sum_probs=113.6
Q ss_pred CCCCCCcHHHHHHHHH----cCcCCCCCcceeeEEEECCEeCC--cccceEEEEccCC-----CCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLA----GQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQED-----LFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~----g~~~~~~~~~~~G~i~i~g~~~~--~~~~~i~yv~Q~~-----~l~~~lTV~e~l~~~~~ 69 (551)
+|||||||||||++|. |..+++ .|.+..+...+. .....+++++|++ .....+|+.|++.+.
T Consensus 28 ~G~NGsGKTTLl~ai~~~l~G~~~~~-----~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~-- 100 (204)
T cd03240 28 VGQNGAGKTTIIEALKYALTGELPPN-----SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC-- 100 (204)
T ss_pred ECCCCCCHHHHHHHHHHHHcCCCCcc-----cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeee--
Confidence 5999999999999995 887665 344331111122 1234589999987 444556788877542
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHH------HHHHHHHhhCCceEEEeCCCCCCCHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR------LSLACELIASPSVIYADEPTTGLDAF 143 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR------vsIa~~L~~~p~illLDEPtsGLD~~ 143 (551)
...+ +++.+ ++.++.||+||||| ++||++++.+|+++++||||++||+.
T Consensus 101 -------~~~~----~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~ 155 (204)
T cd03240 101 -------HQGE----SNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE 155 (204)
T ss_pred -------chHH----HHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence 1111 22222 33467899999996 78999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEc-CC
Q 008843 144 QAE-KVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLT-EG 186 (551)
Q Consensus 144 ~~~-~i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~-~G 186 (551)
.+. .+.+.|++++++ |.|||+++|++. ....+|+++.|. +|
T Consensus 156 ~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 156 NIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 999 999999999876 889999999964 345699999995 44
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=2.1e-25 Score=217.71 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=119.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcCCC-----C
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-----E 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~-----~ 74 (551)
+||||||||||+++|.-. +|.+.... ..++++++|+..+++.+|++|.+.+....... .
T Consensus 31 vGpNGaGKSTll~~i~~~---------------~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (212)
T cd03274 31 VGPNGSGKSNVIDSMLFV---------------FGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSK 95 (212)
T ss_pred ECCCCCCHHHHHHHHHHH---------------hccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHC
Confidence 699999999999999722 12221111 24588999999899999999987766543210 0
Q ss_pred CCCHHHHHH--HHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhh----CCceEEEeCCCCCCCHHHHHHH
Q 008843 75 ILSVEERDE--YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 75 ~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~----~p~illLDEPtsGLD~~~~~~i 148 (551)
....++... ..+++++.++|.+..++ .++.+|+|||||++||++++. +|+++++||||+|||+.++..+
T Consensus 96 g~~~~~~~~~v~~~~~~~~~~L~~~~~~-----~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l 170 (212)
T cd03274 96 GIDLDHNRFLILQGEVEQIAQMPKKSWK-----NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV 170 (212)
T ss_pred CcCCCCCceEEcCCcEEEeecccccccc-----chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH
Confidence 011111110 12556677788655544 456899999999999999974 5799999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
.+.|+++++ +.|+|+++|++ ++...||++++|..
T Consensus 171 ~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 171 ANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999864 67888888985 67788999999953
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=7.3e-24 Score=207.16 Aligned_cols=163 Identities=20% Similarity=0.147 Sum_probs=110.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECC----EeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG----KPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g----~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+++|++.+... ..+....+. .........+++++|++.... ++.+.. ..
T Consensus 34 ~G~NGsGKSTll~~i~~~l~g~----~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl 97 (213)
T cd03279 34 CGPTGAGKSTILDAITYALYGK----TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GL 97 (213)
T ss_pred ECCCCCCHHHHHHHheeeEecC----ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec----------CC
Confidence 5999999999999999654211 012222210 111122345899998863211 121111 12
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhh----------CCceEEEeCCCCCCCHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA----------SPSVIYADEPTTGLDAFQAE 146 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~----------~p~illLDEPtsGLD~~~~~ 146 (551)
+.++..+.+ .++..++.+. .+..++.||||||||++||++|+. +|+++++||||+|||+.++.
T Consensus 98 ~~~~~~~~~--~l~~g~l~~~-----l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~ 170 (213)
T cd03279 98 DYDQFTRIV--LLPQGEFDRF-----LARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALE 170 (213)
T ss_pred CHHHHHHhh--hhhhcchHHH-----hcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHH
Confidence 222221111 1233334322 244677899999999999999985 57899999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 147 KVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 147 ~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
.+.+.|++++++|.|+|+++|++. .+...+|+++++++|.
T Consensus 171 ~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 171 AVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999877999999999974 6778889999998874
No 378
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.90 E-value=5.7e-23 Score=223.57 Aligned_cols=161 Identities=34% Similarity=0.422 Sum_probs=132.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||+|||||||+|+|...|. +|.|.+.- ..++||..|+. .+.+..|+.|++.-... .
T Consensus 354 iG~NG~GKSTLlk~l~g~~~~~-----~G~v~~g~------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~----~----- 413 (530)
T COG0488 354 VGPNGAGKSTLLKLLAGELGPL-----SGTVKVGE------TVKIGYFDQHRDELDPDKTVLEELSEGFP----D----- 413 (530)
T ss_pred ECCCCCCHHHHHHHHhhhcccC-----CceEEeCC------ceEEEEEEehhhhcCccCcHHHHHHhhCc----c-----
Confidence 6999999999999999998776 78887632 24699999986 55588899998765321 1
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
..+..+...|..+++.... -.++++.||||||.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. .
T Consensus 414 ~~e~~~r~~L~~f~F~~~~----~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~ 486 (530)
T COG0488 414 GDEQEVRAYLGRFGFTGED----QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---E 486 (530)
T ss_pred ccHHHHHHHHHHcCCChHH----HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---C
Confidence 0146688899999996321 14567889999999999999999999999999999999999999999999875 4
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEE
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 190 (551)
.|||+++|| +..+...+++++.+.+ ++..
T Consensus 487 Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~ 515 (530)
T COG0488 487 GTVLLVSHD-RYFLDRVATRIWLVED-KVEE 515 (530)
T ss_pred CeEEEEeCC-HHHHHhhcceEEEEcC-ceeE
Confidence 699999999 5689999999999988 4443
No 379
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.7e-23 Score=244.03 Aligned_cols=176 Identities=24% Similarity=0.332 Sum_probs=144.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|+.|||||||.++|-++..+. +|+|.+||.++... +.+++.+|||+.+|+. |||.||.-..+
T Consensus 1172 VGRTGaGKSSL~~aLFRl~e~~-----~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e------ 1239 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVEPA-----EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDE------ 1239 (1381)
T ss_pred eCCCCCCHHHHHHHHHHhcCcc-----CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcccc------
Confidence 6999999999999999999886 89999999998764 4679999999999998 99999864322
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +-+.||..+| ....|+.+. +...++|-||||-+++||||+++++||+|||+|++.|+.+-..|
T Consensus 1240 ~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI 1314 (1381)
T KOG0054|consen 1240 YSDDE----IWEALERCQLKDVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 1314 (1381)
T ss_pred cCHHH----HHHHHHHhChHHHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH
Confidence 23333 2333333333 223455554 35678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
-+.||+-= .++|||.+.|..+ .+.. +|||+||++|+++++|+|.+
T Consensus 1315 Q~tIR~~F-~dcTVltIAHRl~-TVmd-~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1315 QKTIREEF-KDCTVLTIAHRLN-TVMD-SDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHHHh-cCCeEEEEeeccc-hhhh-cCeEEEeeCCeEeecCChHH
Confidence 99998854 4799999999975 4555 79999999999999999977
No 380
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.89 E-value=1e-24 Score=210.04 Aligned_cols=209 Identities=25% Similarity=0.425 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008843 285 RQFWLLLRRAWMQASRDGPTN-KVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKER 363 (551)
Q Consensus 285 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er 363 (551)
+|++.+++|+++..+|||... ...++..++.++++|.+|.+++++.++. ++.|++++.+...++.........+.+||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999988544555 77888877777666566665657788999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 008843 364 AIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPT 443 (551)
Q Consensus 364 ~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s 443 (551)
..+.||+.++.|++.+|.+|+.+.+++..++.++++..+.|++.|++.+ +|+.+++.+++..+++.++|.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999887 67778888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHHhc
Q 008843 444 TEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEF 496 (551)
Q Consensus 444 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~nef 496 (551)
.+.+..+.+++..++++++|.++|.+.+|+|++|+.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999998876
No 381
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.5e-22 Score=202.28 Aligned_cols=171 Identities=20% Similarity=0.220 Sum_probs=112.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECC--------EeCC--cccc--eEEEEccCCCC-CCCCCHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG--------KPSS--NKAY--KFAYVRQEDLF-FSQLTVRETLSLA 67 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g--------~~~~--~~~~--~i~yv~Q~~~l-~~~lTV~e~l~~~ 67 (551)
+|||||||||||++|++...+. .|++..++ .... .... .+.|..|++.. .-..++++...
T Consensus 28 ~G~NGsGKStll~ai~~~l~~~-----~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~-- 100 (247)
T cd03275 28 IGPNGSGKSNLMDAISFVLGEK-----SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS-- 100 (247)
T ss_pred ECCCCCCHHHHHHHHHHHhCCC-----cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce--
Confidence 5999999999999999987543 23333322 1100 0111 24454454321 00111111100
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCc---------ccc--------CCcCCCCChHHhHHHHHHHHHhhC---
Q 008843 68 AELQLPEILSVEERDEYVNSLLFKLGLVSCADS---------NVG--------DAKVRGISGGEKKRLSLACELIAS--- 127 (551)
Q Consensus 68 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg--------~~~~~~LSGGerqRvsIa~~L~~~--- 127 (551)
..+... +....+.++++++.+|+...... .+. +..+..||||||||++||++++.+
T Consensus 101 -~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~ 176 (247)
T cd03275 101 -SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQ 176 (247)
T ss_pred -EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccC
Confidence 001111 01112345688888998532111 111 123488999999999999999875
Q ss_pred -CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 128 -PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 128 -p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
|+++++||||+|||+..+..+.+.|++++++|.++|+++|++ ++...+|+++++.
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 899999999999999999999999999987799999999995 4567899999995
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=2e-21 Score=232.33 Aligned_cols=136 Identities=28% Similarity=0.365 Sum_probs=110.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHh---hCCce
Q 008843 54 FFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI---ASPSV 130 (551)
Q Consensus 54 l~~~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~---~~p~i 130 (551)
.+...||.|+|.+...-........++..+++ +.++.+||.+.. .++.+..||||||||++||++|+ .+|++
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~----l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLP----LGRPLSSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchh----hcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 56778999999887642111112234455566 588999996431 23456789999999999999998 69999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc------CCeEEEecCCCC
Q 008843 131 IYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT------EGKLVYAGPARD 196 (551)
Q Consensus 131 llLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~ 196 (551)
++|||||+|||+.++..+++.|++++++|.|||+++|++. .+ ..+|++++|. +|+++..|++++
T Consensus 834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 9999999999999999999999999988999999999975 45 7899999996 789999998865
No 383
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=8.2e-22 Score=190.45 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=107.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE-eCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK-PSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~-~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+.+|.............|.. +... ........+.+++|+..++++ + .. .
T Consensus 27 ~G~NGsGKStll~ai~~~l~~~~~~~~r~~~-~~~~i~~~~~~~~i~~~~~~~~~~~~---------------~--~~-~ 87 (198)
T cd03276 27 VGNNGSGKSAILTALTIGLGGKASDTNRGSS-LKDLIKDGESSAKITVTLKNQGLDAN---------------P--LC-V 87 (198)
T ss_pred ECCCCCcHHHHHHHHHHHhcCCccccccccc-HHHHhhCCCCeEEEEEEEEcCCccCC---------------c--CC-H
Confidence 5999999999999998543221000001110 0000 001112347788887665541 0 11 1
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHH----hhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACEL----IASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L----~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
..++.++++++. .+.. ++.++.||||||||++||+++ +.+|++++|||||+|||...+..+.+.|+++
T Consensus 88 ~~~~~~~~~l~~---~~~~-----~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 88 LSQDMARSFLTS---NKAA-----VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred HHHHHHHHHhcc---cccc-----CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHH
Confidence 123456677766 3333 345778999999999999999 5899999999999999999999999999998
Q ss_pred HhC---CCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 156 AQD---GHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 156 a~~---g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
+++ +.||++++|++. .+.. +|+|.+|+.++
T Consensus 160 ~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 160 AKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred HhcCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence 653 358999999975 5555 49999998753
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.85 E-value=5.2e-21 Score=207.57 Aligned_cols=161 Identities=30% Similarity=0.396 Sum_probs=127.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
.||||||||||+|+|+|+-|.. +|.|..- ....+-|+||.+.+... |.+|.+.+..... ..+
T Consensus 425 ~G~SG~GKTsLlRaiaGLWP~g-----~G~I~~P------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~--- 486 (604)
T COG4178 425 TGESGAGKTSLLRALAGLWPWG-----SGRISMP------ADSALLFLPQRPYLPQG-TLREALCYPNAAP---DFS--- 486 (604)
T ss_pred ECCCCCCHHHHHHHHhccCccC-----CCceecC------CCCceEEecCCCCCCCc-cHHHHHhCCCCCC---CCC---
Confidence 4999999999999999999876 6776542 23457899999998777 9999988753221 122
Q ss_pred HHHHHHHHHHHcCCCcccCcccc-CCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVG-DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
++.+.++|.++||.+..+..-+ ++--+.||+|||||+++||.|+++|++++|||.|++||..+...+++.+++-. .+
T Consensus 487 -d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~ 564 (604)
T COG4178 487 -DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PD 564 (604)
T ss_pred -hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CC
Confidence 3457789999999877654322 22457899999999999999999999999999999999999999999998843 37
Q ss_pred CEEEEEecCCchhHHhhcccEEEE
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
.|||-+.|+|. +..+.++.+-+
T Consensus 565 ~tvISV~Hr~t--l~~~h~~~l~l 586 (604)
T COG4178 565 ATVISVGHRPT--LWNFHSRQLEL 586 (604)
T ss_pred CEEEEeccchh--hHHHHhhheee
Confidence 89999999975 44445665555
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.84 E-value=2.2e-20 Score=214.95 Aligned_cols=124 Identities=30% Similarity=0.385 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC---ceEEEe
Q 008843 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYAD 134 (551)
Q Consensus 58 lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p---~illLD 134 (551)
+||.|++.|...+. +. ....+.++.+||.+. ..++.+..||||||||+.||++|+.+| ++++||
T Consensus 792 ltv~E~l~~f~~~~--------~i-~~~l~~L~~vgL~~l----~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 792 MTVEEALEFFEAIP--------KI-ARKLQTLVDVGLGYI----KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred CcHHHHHHHHHhch--------hh-hHHHHHHHHCCCCcc----cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 78999998876542 11 234578999999542 123456789999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 135 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
|||+|||+.+...+++.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|++++
T Consensus 859 EPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 859 EPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 999999999999999999999888999999999975 44 569999999 7999999998766
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=196.33 Aligned_cols=185 Identities=26% Similarity=0.413 Sum_probs=158.5
Q ss_pred CCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeC-Cc---c---cceEEEEccCC---CCCCCCCHHHHHHHHHHcC
Q 008843 2 GPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS-SN---K---AYKFAYVRQED---LFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~-~~---~---~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~l~ 71 (551)
|-.|-|-+.|+.+|+|+.++. +|+|.++|+++ .. . ...++|||.|. .+.+.+|+.||+.+...-+
T Consensus 291 GV~GNGQ~eL~eaisGlr~~~-----~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~ 365 (501)
T COG3845 291 GVAGNGQSELVEAISGLRKPA-----SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK 365 (501)
T ss_pred ecCCCCHHHHHHHHhCCCccC-----CceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccc
Confidence 778999999999999998765 69999999996 22 1 13489999985 5788999999998876432
Q ss_pred C----CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 72 L----PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 72 ~----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
. .......+.++.+.+++++++..... -..+.+.||||++||+-+||+|..+|++|+..+||.|||..+...
T Consensus 366 ~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~----~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~ 441 (501)
T COG3845 366 KPFSRGGFLDRRAIRKFARELIEEFDVRAPS----PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEF 441 (501)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCccCCC----CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHH
Confidence 1 12356677888999999999985221 134578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 148 VMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|.+.|.+.++.|+.|++++-+. ++++.++|||.+|.+|+++...++++
T Consensus 442 I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 442 IHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCceeccccccc
Confidence 9999999999999999999995 69999999999999999998888775
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=194.02 Aligned_cols=157 Identities=25% Similarity=0.342 Sum_probs=126.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||-||||+.++|+|.++|+ +|+ ....+++|=||--.--...||++.|.-...-+...
T Consensus 373 lGpNgiGKTTFvk~LAG~ikPd-----eg~---------~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~------ 432 (591)
T COG1245 373 LGPNGIGKTTFVKLLAGVIKPD-----EGS---------EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS------ 432 (591)
T ss_pred ECCCCcchHHHHHHHhccccCC-----CCC---------CccceEeecceeecCCCCCcHHHHHHHhhhhhccc------
Confidence 6999999999999999999998 564 12346889999765556679999887654432211
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g 159 (551)
.-...++++-|+|++..|. .+.+|||||.|||+||.+|..++++.+||||++-||+..+..+-+.+|+..+ .+
T Consensus 433 -s~~~~ei~~pl~l~~i~e~-----~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~ 506 (591)
T COG1245 433 -SYFKTEIVKPLNLEDLLER-----PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNE 506 (591)
T ss_pred -chhHHhhcCccchHHHHhc-----ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcC
Confidence 1234567888888665554 5678999999999999999999999999999999999999999999999985 57
Q ss_pred CEEEEEecCCchhHHhhcccEEEEc
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
+|.+++-||. ..+..+.||+++..
T Consensus 507 kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 507 KTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred ceEEEEecce-ehhhhhhceEEEEe
Confidence 8999999996 46677788888764
No 388
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.8e-21 Score=197.46 Aligned_cols=172 Identities=27% Similarity=0.361 Sum_probs=135.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc----c-eEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA----Y-KFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~----~-~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+|.||||||||++.|.|+.+|+ +|+|.+||+|++... + -++-|+-|-.+|+++-- ++.
T Consensus 355 iG~NGsGKST~~~LLtGL~~Pq-----sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~------------~e~ 417 (546)
T COG4615 355 IGGNGSGKSTLAMLLTGLYQPQ-----SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG------------PEG 417 (546)
T ss_pred ECCCCCcHHHHHHHHhcccCCC-----CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC------------Ccc
Confidence 5999999999999999999998 899999999998653 1 25556666666664211 111
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH-H
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR-Q 154 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~-~ 154 (551)
. ...+.++..++.+.|.+.-.-.-|+-..-.||-|||||+++-.||+-+.+|+++||=-+.-||.-++.+.+.+- .
T Consensus 418 ~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~ 494 (546)
T COG4615 418 K---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPL 494 (546)
T ss_pred C---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHH
Confidence 1 12345778888888866432222333456899999999999999999999999999999999999999987654 4
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA 194 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 194 (551)
+.++|+||+.++||. .-|..+||++.+++|++++.-+.
T Consensus 495 LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~tge 532 (546)
T COG4615 495 LKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELTGE 532 (546)
T ss_pred HHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecccc
Confidence 567899999999994 46888999999999999976543
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=7.2e-20 Score=210.39 Aligned_cols=125 Identities=29% Similarity=0.366 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhh---CCceEEE
Q 008843 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA---SPSVIYA 133 (551)
Q Consensus 57 ~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~---~p~illL 133 (551)
.+||.|.+.|...+.. ..+..++++.+||... ..++.++.|||||+||+.||++|+. +|++++|
T Consensus 789 ~~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l----~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYI----KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CCcHHHHHHHHHhccc---------hhHHHHHHHHcCCCch----hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 3678888877654321 1134578899999532 1234577899999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
||||+|||+..+..+.+.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|++++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence 9999999999999999999999988999999999975 44 569999999 7999999998765
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.80 E-value=5.8e-20 Score=193.25 Aligned_cols=162 Identities=25% Similarity=0.377 Sum_probs=124.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccC--CCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQE--DLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~--~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||||++.|.+.|. .|.|.-.-+ .++++-.|. +.+--+.++.|++.-.. + .
T Consensus 422 VGPNG~GKsTLlKl~~gdl~p~-----~G~vs~~~H------~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~ 482 (614)
T KOG0927|consen 422 VGPNGAGKSTLLKLITGDLQPT-----IGMVSRHSH------NKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----D 482 (614)
T ss_pred ecCCCCchhhhHHHHhhccccc-----ccccccccc------ccchhhhhhhHhhcCcchhHHHHHHHhc----c----c
Confidence 6999999999999999999987 677643222 234444454 23334456666654321 1 1
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
....+.+..++.++||....+ +.+.++||+|||+||..|+.++..|.+|+|||||+|||..+...+-+.|.+.
T Consensus 483 ~~~~e~~r~ilgrfgLtgd~q----~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--- 555 (614)
T KOG0927|consen 483 EKELEEMRSILGRFGLTGDAQ----VVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--- 555 (614)
T ss_pred cchHHHHHHHHHHhCCCcccc----ccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---
Confidence 234566888999999964332 3467899999999999999999999999999999999999999988888775
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcCCeEE
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLV 189 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 189 (551)
..+||+++||-. .+.+.++++.+..+|.+.
T Consensus 556 ~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 556 PGGVVLVSHDFR-LISQVAEEIWVCENGTVT 585 (614)
T ss_pred CCceeeeechhh-HHHHHHHHhHhhccCcee
Confidence 458999999965 788889999999887654
No 391
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=2.8e-19 Score=174.67 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=68.6
Q ss_pred CcCCCCChHHhHHHHHHHHH----hhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchhHHhhcc
Q 008843 105 AKVRGISGGEKKRLSLACEL----IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-G-HTVICSIHQPRGSVYFKFD 178 (551)
Q Consensus 105 ~~~~~LSGGerqRvsIa~~L----~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~-g-~tvi~~~H~~~~~i~~~~D 178 (551)
..+..||||||||+.++.+| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|+++|+... ....+|
T Consensus 122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~ 200 (213)
T cd03277 122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHE 200 (213)
T ss_pred cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccC
Confidence 35678999999998877554 5899999999999999999999999999999876 6 489999999653 445555
Q ss_pred --cEEEEcCCe
Q 008843 179 --DIVLLTEGK 187 (551)
Q Consensus 179 --~v~lL~~G~ 187 (551)
++++|++|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 788888886
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.78 E-value=2.7e-19 Score=188.31 Aligned_cols=108 Identities=28% Similarity=0.381 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
..+.++.+++..+|.. ...-++.+.++|||+|+|+++||+|..+|++|+|||||+|||..+...+-+.|.+. .
T Consensus 196 ~~~~k~~~il~glgf~----~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d 268 (614)
T KOG0927|consen 196 TFEAKAAKILHGLGFL----SEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---D 268 (614)
T ss_pred hHHHHHHHHHHhcCCC----HhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---c
Confidence 3445666788888763 22234567889999999999999999999999999999999999999998888775 3
Q ss_pred C-EEEEEecCCchhHHhhcccEEEEcCCeE-EEecCCC
Q 008843 160 H-TVICSIHQPRGSVYFKFDDIVLLTEGKL-VYAGPAR 195 (551)
Q Consensus 160 ~-tvi~~~H~~~~~i~~~~D~v~lL~~G~i-v~~G~~~ 195 (551)
+ ++++++|. .+.+-..|.+|+-|.+++. .|.|+-+
T Consensus 269 ~~~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 269 RIILVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred CceEEEEecc-hhhhhhHhhhhheecccceeeecCCHH
Confidence 4 88999997 5678889999999999995 5556543
No 393
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=2.3e-19 Score=168.60 Aligned_cols=192 Identities=20% Similarity=0.245 Sum_probs=143.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeC---Ccc-c-----ceEEEEccCCC--CCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS---SNK-A-----YKFAYVRQEDL--FFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~---~~~-~-----~~i~yv~Q~~~--l~~~lTV~e~l~~~~~ 69 (551)
+|.||||||-..|+|+|..+.+ -........+++.++ ++. + +.+++++|++. +-|.-+|...|.-...
T Consensus 39 VGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP 117 (330)
T COG4170 39 VGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIP 117 (330)
T ss_pred eccCCCchhHHHHHHhcccccc-eEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCc
Confidence 6999999999999999987643 111122334444432 211 1 23789999973 5555555444432211
Q ss_pred cC--CCCCC-CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHH
Q 008843 70 LQ--LPEIL-SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (551)
Q Consensus 70 l~--~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~ 146 (551)
.. ..+.+ ....+++++-++|.++|+.+..| +-..++.+|--||-|+|.||.|++.+|++|+.||||+.+|+.++.
T Consensus 118 ~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--IM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~ 195 (330)
T COG4170 118 AWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--IMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA 195 (330)
T ss_pred cccccchHhhhhchhHHHHHHHHHHhccccHHH--HHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHH
Confidence 00 00111 11235677889999999976554 445688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 147 KVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 147 ~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|.++.+ +|.||++++||. ..+-+.||++-+|.-|+-++.++.++
T Consensus 196 QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~ESa~~e~ 245 (330)
T COG4170 196 QIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVESAPSEE 245 (330)
T ss_pred HHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEecccccccchhH
Confidence 99999999984 688999999996 57888899999999999999988776
No 394
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.78 E-value=1.7e-18 Score=164.41 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=67.9
Q ss_pred CChHHhHHHHHHHHHh----hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 110 ISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 110 LSGGerqRvsIa~~L~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
||||||||++||++++ .+|+++++|||++|||+..+..+.+.|++++++|.++|+++|++. ....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4467999999864
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=7.1e-19 Score=181.62 Aligned_cols=159 Identities=30% Similarity=0.441 Sum_probs=118.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc--------------------ccceEE----EEccCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--------------------KAYKFA----YVRQEDLFFS 56 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~--------------------~~~~i~----yv~Q~~~l~~ 56 (551)
+||||-||||-+|+|+|.+.|+ -|+ .++.|-.+ ...++. ||.--+..+.
T Consensus 106 lG~NGiGKsTalkILaGel~PN-----LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~K 178 (591)
T COG1245 106 LGPNGIGKSTALKILAGELKPN-----LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVK 178 (591)
T ss_pred EcCCCccHHHHHHHHhCccccC-----CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhc
Confidence 6999999999999999999887 232 23322110 001122 2222223333
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCC
Q 008843 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP 136 (551)
Q Consensus 57 ~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEP 136 (551)
. ||.|-|.-.. -+...+++++.|+|.+..|. .+++|||||.||++||.+++++++++++|||
T Consensus 179 G-~v~elLk~~d------------e~g~~devve~l~L~nvl~r-----~v~~LSGGELQr~aIaa~l~rdADvY~FDEp 240 (591)
T COG1245 179 G-KVGELLKKVD------------ERGKFDEVVERLGLENVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFDEP 240 (591)
T ss_pred c-hHHHHHHhhh------------hcCcHHHHHHHhcchhhhhh-----hhhhcCchHHHHHHHHHHHhccCCEEEEcCC
Confidence 3 5666544221 11357789999999666554 4678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 137 TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 137 tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
||-||...+....+.++++++.+++||++.||. ..+..+.|.|.++..
T Consensus 241 sSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 241 SSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred cccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 999999999999999999998899999999996 466777888888853
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.5e-18 Score=178.24 Aligned_cols=164 Identities=24% Similarity=0.407 Sum_probs=127.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|+||+||||++|++.|...|. .|.+.++ .+.+++|-.|...=+-.+.|.+ +.+....+ |+. .
T Consensus 396 vg~ng~gkst~lKi~~~~l~~~-----rgi~~~~------~r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-pG~-~--- 458 (582)
T KOG0062|consen 396 VGENGDGKSTLLKILKGDLTPT-----RGIVGRH------PRLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-PGK-T--- 458 (582)
T ss_pred eccCchhHHHHHHHHhccCCcc-----cceeeec------ccceecchhHhhhhHHHHHhHH-HHHHHHhC-CCC-C---
Confidence 5999999999999999988765 5665543 2467899999765444445533 23333332 222 2
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
++.+++-+..+||+ ..+....+.+||||||-||++|.....+|-+|+|||||+.||-.+-..+.+.|+.. +.
T Consensus 459 -~ee~r~hl~~~Gl~----g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~G 530 (582)
T KOG0062|consen 459 -EEEIRRHLGSFGLS----GELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NG 530 (582)
T ss_pred -HHHHHHHHHhcCCC----chhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CC
Confidence 23456778999995 33445557899999999999999999999999999999999999999988888876 56
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCCeEEE
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 190 (551)
.||+++|+ ...+...|+.+.+.++|++.-
T Consensus 531 GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 531 GVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 89999999 568889999999999999864
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.75 E-value=2.1e-18 Score=167.01 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=74.0
Q ss_pred CCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~-~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
...+|+||||++.|+++ +.+|+++++|||++|||+..+..+. ..++++.+.|.++|++||++ ++...+|++..+++
T Consensus 89 ~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~ 165 (200)
T cd03280 89 LSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN 165 (200)
T ss_pred cchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE
Confidence 35799999999999987 5899999999999999999999996 47888887799999999983 57788999999999
Q ss_pred CeEEEec
Q 008843 186 GKLVYAG 192 (551)
Q Consensus 186 G~iv~~G 192 (551)
|++.+.+
T Consensus 166 g~l~~~~ 172 (200)
T cd03280 166 ASMEFDP 172 (200)
T ss_pred EEEEEec
Confidence 9999874
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.3e-18 Score=182.33 Aligned_cols=165 Identities=27% Similarity=0.335 Sum_probs=112.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHH-HHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLA-AELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~-~~l~~~~~~~~~ 79 (551)
+|+||+|||||||+|+. |+| .+.+.... .+--+++-.......-|.++.+... ..+. ..-
T Consensus 112 vGrNG~GKsTLLRaia~-----------~~v--~~f~veqE-~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~-----~~~ 172 (582)
T KOG0062|consen 112 VGRNGIGKSTLLRAIAN-----------GQV--SGFHVEQE-VRGDDTEALQSVLESDTERLDFLAEEKELL-----AGL 172 (582)
T ss_pred eCCCCCcHHHHHHHHHh-----------cCc--CccCchhh-eeccchHHHhhhhhccHHHHHHHHhhhhhh-----ccc
Confidence 59999999999999987 111 22222111 1112333222222222333333221 1110 111
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
++++...++|..+|..+- .-..+.+.||||=|-|+++||||..+|++|+|||||+.||..+...+-..|+.+ +
T Consensus 173 ~l~ei~~~~L~glGFt~e----mq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~ 245 (582)
T KOG0062|consen 173 TLEEIYDKILAGLGFTPE----MQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---K 245 (582)
T ss_pred hHHHHHHHHHHhCCCCHH----HHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---C
Confidence 334445558999998542 234578899999999999999999999999999999999999999999998876 4
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeE-EEec
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKL-VYAG 192 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~i-v~~G 192 (551)
.|+|+++|| +..+-..|..|+.+++-++ .|.|
T Consensus 246 ~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkG 278 (582)
T KOG0062|consen 246 ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKG 278 (582)
T ss_pred ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcC
Confidence 799999999 6677788888888876555 3444
No 399
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.75 E-value=4.6e-18 Score=180.22 Aligned_cols=169 Identities=23% Similarity=0.254 Sum_probs=126.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
.||||||||+|+|+|+|+-+.. +|.+.--.+. ..+.+-||||.+.+--. |.||.+.|...--. ..++..
T Consensus 467 tG~sG~GKtSLlRvlggLWp~~-----~G~l~k~~~~---~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~--~~~~~~ 535 (659)
T KOG0060|consen 467 TGPSGCGKTSLLRVLGGLWPST-----GGKLTKPTDG---GPKDLFFLPQRPYMTLG-TLRDQVIYPLKAED--MDSKSA 535 (659)
T ss_pred ECCCCCchhHHHHHHhcccccC-----CCeEEecccC---CCCceEEecCCCCcccc-chhheeeccCcccc--ccccCC
Confidence 4999999999999999998755 6877643222 12448899999987666 99999988632111 112222
Q ss_pred HHHHHHHHHHHcCCCcccCcccc------CCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVG------DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.++++.+.|+.++|.|..+..=| -+....||+||+||++.||-+.++|++-+|||.||++|......+.+.+++
T Consensus 536 ~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~ 615 (659)
T KOG0060|consen 536 SDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE 615 (659)
T ss_pred CHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH
Confidence 34567777777777765533211 223468999999999999999999999999999999999999998888876
Q ss_pred HHhCCCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 155 LAQDGHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
.|.|.|-+.|.++-.-++ |.++-|+.
T Consensus 616 ---~giT~iSVgHRkSL~kfH--d~~L~~~g 641 (659)
T KOG0060|consen 616 ---MGITFISVGHRKSLWKFH--DYVLRMDG 641 (659)
T ss_pred ---cCCeEEEeccHHHHHhhh--hEEEEecC
Confidence 489999999987644443 77887864
No 400
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.3e-18 Score=172.73 Aligned_cols=142 Identities=33% Similarity=0.490 Sum_probs=113.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCC--CCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED--LFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||.||||||++|.|.+.|. .|+.. ...+.+||+..|.. .+-..-|.-|.|.-...+ | .
T Consensus 619 VGPNGVGKSTlLkLL~Gkl~P~-----~GE~R------KnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl--p----y 681 (807)
T KOG0066|consen 619 VGPNGVGKSTLLKLLIGKLDPN-----DGELR------KNHRLRIGWFDQHANEALNGEETPVEYLQRKFNL--P----Y 681 (807)
T ss_pred ECCCCccHHHHHHHHhcCCCCC-----cchhh------ccceeeeechhhhhHHhhccccCHHHHHHHhcCC--C----h
Confidence 6999999999999999999987 56643 22345699988864 455556777766543322 2 2
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
. .+...|-.+||...++|. .+..|||||+-||++|.--+..|+||||||||++||..+...+.+.|++.
T Consensus 682 q----~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney--- 750 (807)
T KOG0066|consen 682 Q----EARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY--- 750 (807)
T ss_pred H----HHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---
Confidence 2 245678889998888774 47789999999999999999999999999999999999999888888775
Q ss_pred CCEEEEEecCCc
Q 008843 159 GHTVICSIHQPR 170 (551)
Q Consensus 159 g~tvi~~~H~~~ 170 (551)
...||+++||.+
T Consensus 751 ~GgVi~VsHDeR 762 (807)
T KOG0066|consen 751 NGGVIMVSHDER 762 (807)
T ss_pred cCcEEEEecccc
Confidence 458999999965
No 401
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=1.4e-17 Score=192.08 Aligned_cols=135 Identities=27% Similarity=0.428 Sum_probs=108.1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCC------HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC
Q 008843 55 FSQLTVRETLSLAAELQLPEILS------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP 128 (551)
Q Consensus 55 ~~~lTV~e~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p 128 (551)
+..+||.|.+.|.-.+..+.... ..+..++++ .++.+||.+. ..++.+..|||||||||.||++|..+|
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l----~l~r~~~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYL----TLSRSAGTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCC----CCCCchhhCCHHHHHHHHHHHHHhhCC
Confidence 45689999999965543321100 013344554 6888888543 123467789999999999999999997
Q ss_pred --ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 129 --SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 129 --~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
++++|||||+|||+..+..+++.|++++++|.|||+++|++. ++. .+|+|++| ++|++++.|++++
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e 582 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TIR-AADYIVDIGPGAGVHGGEVVASGTPEE 582 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH-hCCEEEEeccccCCCCCEEeeccCHHH
Confidence 999999999999999999999999999988999999999975 454 59999999 9999999998765
No 402
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=1.6e-17 Score=191.25 Aligned_cols=135 Identities=26% Similarity=0.404 Sum_probs=106.1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCH------HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC
Q 008843 55 FSQLTVRETLSLAAELQLPEILSV------EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP 128 (551)
Q Consensus 55 ~~~lTV~e~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p 128 (551)
+..|||.|.+.|...+........ .+..++. +.+..+||... ..++.+..|||||+|||.||++|+.+|
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l----~l~r~~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYL----TLSRAAGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhcccccc----ccCCCcCcCCHHHHHHHHHHHHHhhCC
Confidence 446899999998876543211000 1122222 23677787432 124567899999999999999999986
Q ss_pred --ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 129 --SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 129 --~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
++++|||||+|||+..+..+++.|++++++|.|||+++|++. .+. .+|++++| ++|++++.|++++
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~e 580 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TIR-AADYVIDIGPGAGIHGGEVVASGTPEE 580 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHh-hCCEEEEecccccCCCCEEeeccCHHH
Confidence 899999999999999999999999999988999999999974 454 79999999 8999999998765
No 403
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.71 E-value=2.9e-17 Score=154.13 Aligned_cols=173 Identities=23% Similarity=0.352 Sum_probs=126.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEcc----------CCCCCCCCCHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQ----------EDLFFSQLTVRETLS 65 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q----------~~~l~~~lTV~e~l~ 65 (551)
+|.||||||||||+|+|..--. .|.|.++|++.-.. .....|+-- +-.+-..+++.+. .
T Consensus 46 VGaNGaGKtTlLKiLsGKhmv~-----~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~m-i 119 (291)
T KOG2355|consen 46 VGANGAGKTTLLKILSGKHMVG-----GGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHM-I 119 (291)
T ss_pred EecCCCchhhhHHHhcCccccc-----CCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHH-H
Confidence 5999999999999999975443 58899999864221 111233322 1122234566443 3
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHH
Q 008843 66 LAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA 145 (551)
Q Consensus 66 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~ 145 (551)
|+..-. +. +|-+++++.|++. - .-+.+.+|-||||||.|++-|++.-++|+|||-|-.||..++
T Consensus 120 fgV~g~------dp---~Rre~LI~iLDId----l---~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlAR 183 (291)
T KOG2355|consen 120 FGVGGD------DP---ERREKLIDILDID----L---RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLAR 183 (291)
T ss_pred hhccCC------Ch---hHhhhhhhheecc----c---eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHH
Confidence 433211 11 3345667777662 1 224678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 146 EKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 146 ~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
..+++.+++-++ +|.||+..||-- +-+.....+++.+++|+++..-+.++
T Consensus 184 adLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 184 ADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKLVDNLKYQK 234 (291)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCeeeeccccch
Confidence 999999999985 588999999985 45667788999999999997555443
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.71 E-value=1.5e-17 Score=155.65 Aligned_cols=75 Identities=28% Similarity=0.352 Sum_probs=67.3
Q ss_pred CCChHHhHHHHHHHHHhh----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 109 GISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.++++.++|.++|++||++. ....+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 399999999999999987 78999999999999999999999999998766889999999974 455689999885
Q ss_pred C
Q 008843 185 E 185 (551)
Q Consensus 185 ~ 185 (551)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=6e-17 Score=164.59 Aligned_cols=76 Identities=33% Similarity=0.452 Sum_probs=68.1
Q ss_pred CCCChHHhHHHHHHHHHhh----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE
Q 008843 108 RGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
..||||||||+++|++++. +|+++++||||+|||+.....+.+.|+++++ +.|+|+++|+|. +...+|+++.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence 3599999999999997654 9999999999999999999999999999865 789999999975 45789999999
Q ss_pred cCC
Q 008843 184 TEG 186 (551)
Q Consensus 184 ~~G 186 (551)
.+|
T Consensus 246 ~~~ 248 (276)
T cd03241 246 EKE 248 (276)
T ss_pred EEe
Confidence 765
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.67 E-value=7.4e-17 Score=155.97 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=89.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|... +...|.++... .++.|.+.+++.+|+.|++.+.... ...+
T Consensus 31 tGpNg~GKSTllr~i~~~~~----------l~~~G~~v~a~----~~~~q~~~l~~~~~~~d~l~~~~s~------~~~e 90 (199)
T cd03283 31 TGSNMSGKSTFLRTIGVNVI----------LAQAGAPVCAS----SFELPPVKIFTSIRVSDDLRDGISY------FYAE 90 (199)
T ss_pred ECCCCCChHHHHHHHHHHHH----------HHHcCCEEecC----ccCcccceEEEeccchhccccccCh------HHHH
Confidence 59999999999999998642 11233333221 3667778899999999998775321 1233
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH-HHHHHHHhCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQDG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~-~~L~~la~~g 159 (551)
. +++.++++.+++ .+|+++++|||++|+|+..+..+. ..++++.+.|
T Consensus 91 ~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~ 138 (199)
T cd03283 91 L-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKN 138 (199)
T ss_pred H-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3 557777777652 689999999999999999998875 4788888778
Q ss_pred CEEEEEecCCc
Q 008843 160 HTVICSIHQPR 170 (551)
Q Consensus 160 ~tvi~~~H~~~ 170 (551)
.|+|++||++.
T Consensus 139 ~tiiivTH~~~ 149 (199)
T cd03283 139 TIGIISTHDLE 149 (199)
T ss_pred CEEEEEcCcHH
Confidence 99999999975
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.67 E-value=6.1e-16 Score=169.67 Aligned_cols=126 Identities=31% Similarity=0.406 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC---ceEEE
Q 008843 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYA 133 (551)
Q Consensus 57 ~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p---~illL 133 (551)
.|||.|...|.... ..-.+.-+.|..+||.-. .+ .+....|||||.||+-+|.+|.... .+++|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi---~L-GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYI---KL-GQPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceE---ec-CCccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36788887776542 112334467788898532 12 4567899999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCCc
Q 008843 134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARDE 197 (551)
Q Consensus 134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 197 (551)
||||+||-.....++++.|.+|.+.|.|||++.|+. ++...+|.|+=| ..|++|+.|+|+++
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeev 917 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEV 917 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHH
Confidence 999999999999999999999999999999999985 567779999998 35789999999884
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.63 E-value=1.4e-15 Score=182.77 Aligned_cols=135 Identities=25% Similarity=0.423 Sum_probs=104.3
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCH---HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC--c
Q 008843 55 FSQLTVRETLSLAAELQLPEILSV---EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--S 129 (551)
Q Consensus 55 ~~~lTV~e~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p--~ 129 (551)
+..|++.|.+.|...+........ .+..++. +.|..+||.+.. .++.+..|||||+|||.||++|..+| +
T Consensus 424 ~~~m~i~~l~~~~~~l~~~~~~~~~il~ei~~RL-~~L~~vGL~~L~----ldR~~~tLSGGE~QRV~LAraL~~~p~g~ 498 (1809)
T PRK00635 424 FQQMSLQELFIFLSQLPSKSLSIEEVLQGLKSRL-SILIDLGLPYLT----PERALATLSGGEQERTALAKHLGAELIGI 498 (1809)
T ss_pred HhcCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHhccccCCC----CCCchhhCCHHHHHHHHHHHHHhcCCCCc
Confidence 346788888888766531100000 1112222 234567885431 13456789999999999999999999 8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc------CCeEEEecCCCC
Q 008843 130 VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT------EGKLVYAGPARD 196 (551)
Q Consensus 130 illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~ 196 (551)
+++|||||+|||+.++..+.+.|++++++|.|||+++|++. +...+|++++|. +|++++.|++++
T Consensus 499 lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~e 569 (1809)
T PRK00635 499 TYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPRE 569 (1809)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHH
Confidence 99999999999999999999999999988999999999975 568899999996 789999998765
No 409
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.61 E-value=7e-16 Score=161.76 Aligned_cols=152 Identities=24% Similarity=0.342 Sum_probs=111.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHH---cCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE---LQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~---l~~~~~~~ 77 (551)
.||||||||+|.|+|+|+.|-. .|.. ..+...++-|+||.+.+- .-|.+|.+.+.-. .+. +..+
T Consensus 514 tGPNGCGKSSLfRILggLWPvy-----~g~L------~~P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~-kg~~ 580 (728)
T KOG0064|consen 514 TGPNGCGKSSLFRILGGLWPVY-----NGLL------SIPRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKR-KGYT 580 (728)
T ss_pred ECCCCccHHHHHHHHhccCccc-----CCee------ecCCCcceEeccCCCccC-cCcccceeecCCcHHHHHh-cCCC
Confidence 5999999999999999998642 3433 333445589999998765 4477777655311 110 1122
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCC----cCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDA----KVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~----~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
++..+.+|+.+.|++.+....|=+ .-.-||||||||+.+||.+-++|+.-+|||.||+........+.+..+
T Consensus 581 ----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak 656 (728)
T KOG0064|consen 581 ----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK 656 (728)
T ss_pred ----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence 233556777777766554443321 234699999999999999999999999999999999998888888776
Q ss_pred HHHhCCCEEEEEecCCchh
Q 008843 154 QLAQDGHTVICSIHQPRGS 172 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~ 172 (551)
+ .|.+.+-++|+|+-.
T Consensus 657 ~---~gi~llsithrpslw 672 (728)
T KOG0064|consen 657 D---AGISLLSITHRPSLW 672 (728)
T ss_pred h---cCceEEEeecCccHH
Confidence 6 489999999999743
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=3.6e-16 Score=153.75 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=76.9
Q ss_pred HHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHH--hhCCceEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CC
Q 008843 86 NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACEL--IASPSVIYADEP---TTGLDAFQAEKVMEALRQLAQ-DG 159 (551)
Q Consensus 86 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L--~~~p~illLDEP---tsGLD~~~~~~i~~~L~~la~-~g 159 (551)
+++++.+|+.+. ..+++|.|+++++.+++++ +.+|++++|||| |++||+...... .++.+.+ .|
T Consensus 74 ~~il~~~~l~d~--------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~ 143 (222)
T cd03285 74 DCILARVGASDS--------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIK 143 (222)
T ss_pred ceeEeeeccccc--------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCC
Confidence 345555666421 2468999999999999999 899999999999 999999888643 3344543 58
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA 194 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 194 (551)
.++|++||+ .++..++|++..+++|++...+..
T Consensus 144 ~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~~ 176 (222)
T cd03285 144 CFCLFATHF--HELTALADEVPNVKNLHVTALTDD 176 (222)
T ss_pred CeEEEEech--HHHHHHhhcCCCeEEEEEEEEEeC
Confidence 899999996 478889999999999999877653
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=6.1e-15 Score=149.39 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=62.5
Q ss_pred cCCCCChHHhHHHHHHHHHh---------hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhh
Q 008843 106 KVRGISGGEKKRLSLACELI---------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176 (551)
Q Consensus 106 ~~~~LSGGerqRvsIa~~L~---------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~ 176 (551)
..+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. . +++++|+.. .+...
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~~-~~~~~ 254 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDLA-DFDAL 254 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCch-hccch
Confidence 34568999999999999985 7999999999999999999999999998753 3 455555532 45555
Q ss_pred c---ccEEEEcCCeE
Q 008843 177 F---DDIVLLTEGKL 188 (551)
Q Consensus 177 ~---D~v~lL~~G~i 188 (551)
+ ++++.+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 5 67899999985
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.60 E-value=8.5e-16 Score=148.94 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=70.1
Q ss_pred CCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
.++++++ |++.+.+++.+|+++++|||++|+|+.....+.. +++.+.+.+.++|++||++ ++...+|++..+..|+
T Consensus 91 ~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~ 167 (202)
T cd03243 91 TFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLH 167 (202)
T ss_pred eHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEE
Confidence 4565555 5777788899999999999999999999988865 5677777789999999985 5566789999999999
Q ss_pred EEEecCCCC
Q 008843 188 LVYAGPARD 196 (551)
Q Consensus 188 iv~~G~~~~ 196 (551)
+...+...+
T Consensus 168 ~~~~~~~~~ 176 (202)
T cd03243 168 MEELITTGG 176 (202)
T ss_pred EEEEecCCe
Confidence 998887654
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.53 E-value=2.2e-14 Score=144.60 Aligned_cols=132 Identities=29% Similarity=0.274 Sum_probs=89.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|.++++ +|++.++|+++... ...+++++|++ +.+.++|.++..-
T Consensus 117 ~g~~g~GKttl~~~l~~~~~~~-----~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 117 ISPPQCGKTTLLRDLARILSTG-----ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK-------- 182 (270)
T ss_pred EcCCCCCHHHHHHHHhCccCCC-----CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH--------
Confidence 5999999999999999999987 89999999987521 12367778865 3344455443110
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
. + | .....+..+|+++++|||++ ...+..+++.
T Consensus 183 ----~---~-----------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~ 215 (270)
T TIGR02858 183 ----A---E-----------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEA 215 (270)
T ss_pred ----H---H-----------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence 0 0 0 11222336999999999974 2334445555
Q ss_pred HHhCCCEEEEEecCCchhHH------------hhcccEEEEcCCeEEEecCCCC
Q 008843 155 LAQDGHTVICSIHQPRGSVY------------FKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 155 la~~g~tvi~~~H~~~~~i~------------~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ ++|.++|+++|++..+-. ..|||+++|++|+ ..|.+++
T Consensus 216 ~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 216 L-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred H-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 4 469999999998653222 5689999999887 5555544
No 414
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.52 E-value=3.5e-14 Score=145.61 Aligned_cols=168 Identities=30% Similarity=0.353 Sum_probs=119.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCC---cceeeEEEECCEeCCcccceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPR---LHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~---~~~~G~i~i~g~~~~~~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+|+|||||||||++|.|....-+. -.-+|.|.+--.. -.+.+|-+. .-|..-|+.|++.-- ++
T Consensus 415 vGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~~~tilehl~s~-----tG-- 481 (593)
T COG2401 415 VGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFGEVTILEHLRSK-----TG-- 481 (593)
T ss_pred EecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccCchhHHHHHhhc-----cC--
Confidence 499999999999999997532100 0014544432111 134455543 224455666664310 11
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
.-..+.++|.+.||.+ ...-....+.||-|||.|+.||..+..+|.+++.||-.+.||..++..+.+-+.+++
T Consensus 482 ----D~~~AveILnraGlsD---AvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 482 ----DLNAAVEILNRAGLSD---AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred ----chhHHHHHHHhhccch---hhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 1133568899999964 333345678999999999999999999999999999999999999999999999999
Q ss_pred h-CCCEEEEEecCCchhHHhh-cccEEEEcCCeEE
Q 008843 157 Q-DGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLV 189 (551)
Q Consensus 157 ~-~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~iv 189 (551)
+ .|.|++++||+|. ....+ -|+++++.=|.+.
T Consensus 555 Re~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 555 REAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 5 5899999999974 34444 6888888666543
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.50 E-value=4.6e-14 Score=145.10 Aligned_cols=157 Identities=26% Similarity=0.361 Sum_probs=120.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|.||-||||++++++|+++|+. .|+|- ...++|=||...--..-||++.+.--.+- .-.
T Consensus 373 lgEngtgkTTfi~mlag~~~pd~----~~e~p---------~lnVSykpqkispK~~~tvR~ll~~kIr~-------ay~ 432 (592)
T KOG0063|consen 373 LGENGTGKTTFIRMLAGRLKPDE----GGEIP---------VLNVSYKPQKISPKREGTVRQLLHTKIRD-------AYM 432 (592)
T ss_pred EccCCcchhHHHHHHhcCCCCCc----cCccc---------ccceeccccccCccccchHHHHHHHHhHh-------hhc
Confidence 69999999999999999998872 34432 23467778876555556899876532210 111
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g 159 (551)
....+.++++-|.+++..|. .+.+|||||.|||++|..|=..+++.+.|||.+-||+..+..--+.+++.- +.+
T Consensus 433 ~pqF~~dvmkpL~ie~i~dq-----evq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhak 507 (592)
T KOG0063|consen 433 HPQFVNDVMKPLQIENIIDQ-----EVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAK 507 (592)
T ss_pred CHHHHHhhhhhhhHHHHHhH-----HhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhcc
Confidence 23467788888888666554 456899999999999999999999999999999999999999999998865 567
Q ss_pred CEEEEEecCCchhHHhhcccEEEE
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
+|-.++.|+-- ..-.++||+++.
T Consensus 508 ktafvVEhdfI-maTYladrvivf 530 (592)
T KOG0063|consen 508 KTAFVVEHDFI-MATYLADRVIVF 530 (592)
T ss_pred chhhhhhhHHH-HHHhhcceeEEE
Confidence 89999999954 333567888765
No 416
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4e-15 Score=152.85 Aligned_cols=179 Identities=26% Similarity=0.325 Sum_probs=122.9
Q ss_pred CCCCCCcHHHHHHHHHcCc---CCCCC-cceeeEEEECCEeCCc-----ccceEEEEccCCC-----CCCCCCHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQL---MASPR-LHLSGLLEVNGKPSSN-----KAYKFAYVRQEDL-----FFSQLTVRETLSL 66 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~---~~~~~-~~~~G~i~i~g~~~~~-----~~~~i~yv~Q~~~-----l~~~lTV~e~l~~ 66 (551)
+||||-||||||+-|+.+. +|.-. ...+-+|..+..+.-. ..++...+..++. --...|+.|-+.-
T Consensus 296 VGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~ 375 (807)
T KOG0066|consen 296 VGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKE 375 (807)
T ss_pred cCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 6999999999999999984 33311 1122333333322100 0112222222111 1233577777654
Q ss_pred H-HHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHH
Q 008843 67 A-AELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA 145 (551)
Q Consensus 67 ~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~ 145 (551)
. ..+|.... ...+.++..+|..||.+. ..-+++....|||=|-||++||||-..|.+|.|||||+.||..+.
T Consensus 376 v~~ELraiGA---~sAEarARRILAGLGFsk----EMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAV 448 (807)
T KOG0066|consen 376 VADELRAIGA---DSAEARARRILAGLGFSK----EMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAV 448 (807)
T ss_pred HHHHHHHhcc---ccchhHHHHHHhhcCCCh----hHhcCCccccCCceeeehhHHHHHhcCceeeeecCCcccccccee
Confidence 3 33443222 233456778999999864 334566778999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEE
Q 008843 146 EKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (551)
Q Consensus 146 ~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 190 (551)
..+-..|+.+. +|.++++||. ..+...|..|+.|++-++-|
T Consensus 449 IWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 449 IWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred eehhhHHhhhh---heeEEEeccc-chHHHHHHHHhhhhhhhhhh
Confidence 88888888874 5999999995 47788899999998877654
No 417
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.48 E-value=3.3e-12 Score=126.58 Aligned_cols=199 Identities=12% Similarity=0.121 Sum_probs=143.6
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCC--hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008843 293 RAWMQASRDGPTNKVRARMSIASAIIFGSVFWRM-GRS--QTSI----QDRMGLLQVAAINTAMAALTKTVGVFPKERAI 365 (551)
Q Consensus 293 R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~-~~~--~~~~----~~~~g~lf~~~~~~~~~~~~~~i~~f~~er~v 365 (551)
|+++..+|||.....-+++.++..+++|.++-+. +.+ ..+. .--.|.+.+.....+..... .....+|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~~--~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSGI--SVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHhCH
Confidence 6778899999999988999999999999887543 111 1111 11123333322222222111 1112233344
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 008843 366 VDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTE 445 (551)
Q Consensus 366 ~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~ 445 (551)
+.|=.. .=.+...|+++|.+.+++..++..+++..+.+++.+++. ..++.+++..++..++..++|.++++..++.+
T Consensus 79 ~~~~~~-~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEILV-APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 443332 234678999999999999999999888888888777554 34454555556667778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHHhc
Q 008843 446 AAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEF 496 (551)
Q Consensus 446 ~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~nef 496 (551)
.++.+.+++..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-..-.
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~ 206 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLA 206 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999755433
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.43 E-value=3.2e-13 Score=132.34 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=92.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
.||||||||||||.+++..-. |+ .|..+.....+++++.| +++.+++.|++..+.. .
T Consensus 36 ~Gpn~sGKstllr~i~~~~~l-------~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ls~g~s--------~-- 92 (216)
T cd03284 36 TGPNMAGKSTYLRQVALIALL-------AQ---IGSFVPASKAEIGVVDR---IFTRIGASDDLAGGRS--------T-- 92 (216)
T ss_pred ECCCCCChHHHHHHHHHHHHH-------hc---cCCeeccccceecceee---EeccCCchhhhccCcc--------h--
Confidence 499999999999999875421 21 22233333345777755 5677777776543210 0
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCC---CCCCCHHHHHHHHHHHHHHHh
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP---TTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEP---tsGLD~~~~~~i~~~L~~la~ 157 (551)
. ..|+++++-+...+.+|+++++||| |+++|.... ....++.+.+
T Consensus 93 ---f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~ 140 (216)
T cd03284 93 ---F---------------------------MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHE 140 (216)
T ss_pred ---H---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHh
Confidence 0 1122333333444679999999999 888887552 2334555555
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
. +.++|++||+. ++..++|++..+.+|++...+..++
T Consensus 141 ~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~ 178 (216)
T cd03284 141 KIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGG 178 (216)
T ss_pred ccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCe
Confidence 5 88999999994 6777889888888999888777665
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.42 E-value=2.1e-13 Score=130.39 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=59.3
Q ss_pred CCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEc
Q 008843 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~-~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
.+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++...+|+.--++
T Consensus 59 ~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~ 135 (185)
T smart00534 59 LSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVR 135 (185)
T ss_pred ccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccce
Confidence 4568888776433333 34599999999999999999888875 566777764 88999999996 4667777544444
Q ss_pred CCeEEEe
Q 008843 185 EGKLVYA 191 (551)
Q Consensus 185 ~G~iv~~ 191 (551)
.++....
T Consensus 136 ~~~~~~~ 142 (185)
T smart00534 136 NLHMSAD 142 (185)
T ss_pred EEEEEEE
Confidence 5554443
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.36 E-value=3.4e-13 Score=132.21 Aligned_cols=87 Identities=24% Similarity=0.413 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHh----hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 83 EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 83 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
+.+.+.++..++.. ..+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 44556666666632 279999999999997765 46789999999999999999999999999875
Q ss_pred CCEEEEEecCCchhHHhhcccEEEE
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
+.-+|++||++ ..+..+|+.+.+
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v 211 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGV 211 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEE
T ss_pred ccccccccccc--cccccccccccc
Confidence 47789999985 577888987766
No 421
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.35 E-value=1.2e-10 Score=116.70 Aligned_cols=206 Identities=13% Similarity=0.094 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC------Ch-hh--HHHHHHHHHHHHHHHHHHHHH
Q 008843 284 WRQFWLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRM-GR------SQ-TS--IQDRMGLLQVAAINTAMAALT 353 (551)
Q Consensus 284 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~-~~------~~-~~--~~~~~g~lf~~~~~~~~~~~~ 353 (551)
+++++.+.+|+++...|||..+..-+++.++.-+++|.+|-.. +. +. .+ ..--.|++-+.....++.+..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999988542 11 10 01 111123332222222222111
Q ss_pred HHHHHHHHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Q 008843 354 KTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAM 433 (551)
Q Consensus 354 ~~i~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~ 433 (551)
.....+|+..+.+=+... .+...+.+++++...-..+++.++...+.+. .|.+.....+......+++..+...++
T Consensus 81 --~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 81 --SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred --HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 112223333444444443 5788899999999988777766555544433 366554333443344445566778899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCc---cccchhhhccCHHHHHHHHHHH
Q 008843 434 GLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNT---PIIFRWIPRVSLIRWAFQGLCI 493 (551)
Q Consensus 434 g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~W~~yiSp~~y~~eal~~ 493 (551)
|+++|+++++.+.+..+.++++.+++..+|.+.|.+.+ |.|++|+.++||+.|..|++=.
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999888889999999999999999998766 8899999999999999998844
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.33 E-value=1.3e-12 Score=126.85 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=52.5
Q ss_pred CCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCc
Q 008843 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~-~~L~~la~~g~tvi~~~H~~~ 170 (551)
.+.+|+|++|+ +.+.+++++|+++++|||++|+|+.....+. ..++.+.+.|.++|++||+..
T Consensus 89 ~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 89 LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 45689999965 5667789999999999999999998877654 567888888999999999853
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=6.3e-12 Score=122.93 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=49.4
Q ss_pred hHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH-HHHHHHHHhCC---CEEEEEecCCc
Q 008843 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQDG---HTVICSIHQPR 170 (551)
Q Consensus 112 GGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~~g---~tvi~~~H~~~ 170 (551)
--|-||++++++++.+|+++++|||++|+|+.....+ ...++++.+.| .++|++||++.
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 3467899999999999999999999999999875555 56888887642 48999999964
No 424
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.31 E-value=3.2e-10 Score=113.81 Aligned_cols=202 Identities=9% Similarity=0.065 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCChhh--HHHH--HHHHHHHHHHHHHHHHHHHH-HHHH
Q 008843 287 FWLLLRRAWMQASRD-GPTNKVRARMSIASAIIFGSVFWRMGRSQTS--IQDR--MGLLQVAAINTAMAALTKTV-GVFP 360 (551)
Q Consensus 287 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~--~~~~--~g~lf~~~~~~~~~~~~~~i-~~f~ 360 (551)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+ ..+. .|++-+.+++.+ ..... ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~---~~~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTAS---TFETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 456679999999999 9998888898888888888887543111111 1111 122222222111 11111 1222
Q ss_pred H--hHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008843 361 K--ERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVG 438 (551)
Q Consensus 361 ~--er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~ 438 (551)
+ |+..++|-+..- -++..+.++|.+.+.-..++..++...+.++ .|..+. ......+.++++..++..++|.++|
T Consensus 84 ~~r~~g~~~~l~~~P-v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTP-ITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233333333333 2778999999999877777766555544443 344443 2344444555666777789999999
Q ss_pred HccCCHHHHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHH
Q 008843 439 AMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCIN 494 (551)
Q Consensus 439 a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~n 494 (551)
+.+++.+.+..+.+++..|++.+||.+.|.+.+|.|++++.+++|+.|+.|++-..
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~ 216 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV 216 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997544
No 425
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.30 E-value=4.8e-12 Score=140.95 Aligned_cols=77 Identities=29% Similarity=0.421 Sum_probs=69.6
Q ss_pred CCCChHHhHHHHHHHHHhhC----CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE
Q 008843 108 RGISGGEKKRLSLACELIAS----PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~~~----p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|+++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 57899999999999999985 699999999999999999999999999975 899999999974 34579999999
Q ss_pred cCCe
Q 008843 184 TEGK 187 (551)
Q Consensus 184 ~~G~ 187 (551)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 426
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.28 E-value=5e-10 Score=110.80 Aligned_cols=191 Identities=15% Similarity=0.074 Sum_probs=124.8
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCh
Q 008843 299 SRDGPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQD-RMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYAL 377 (551)
Q Consensus 299 ~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~ 377 (551)
+|||.....-+.+.+++-++++.+|-+.. +.+..+. -.|.+-+..+..+.... ......-+|+..+.|=+..- .++
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~er~~G~l~rl~~~P-~~~ 78 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQ-AIAVARDRRYGALKRLGATP-LPR 78 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHhcCC-CcH
Confidence 68999998888888888788887776521 1122221 22222111111111111 11112223344555555554 478
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CHHHHHHHHHHH
Q 008843 378 GPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVP---TTEAAMAVGPSL 454 (551)
Q Consensus 378 ~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~---s~~~A~~~~~~~ 454 (551)
..|+++|.+..++..++..+++. +++++.|++.....+ .++....+....+.+++.+++++++ +.+.+..+.+++
T Consensus 79 ~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 156 (232)
T TIGR00025 79 LGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLV 156 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999888888776655554 556677888654433 3333333444555666777777764 455558888888
Q ss_pred HHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHH
Q 008843 455 MTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCIN 494 (551)
Q Consensus 455 ~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~n 494 (551)
..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-..
T Consensus 157 ~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~ 196 (232)
T TIGR00025 157 WFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQA 196 (232)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987544
No 427
>PRK10869 recombination and repair protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=136.88 Aligned_cols=76 Identities=29% Similarity=0.404 Sum_probs=68.9
Q ss_pred CCCChHHhHHHHHHHHHhh----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE
Q 008843 108 RGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +...+|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 689999999984 45789999999
Q ss_pred cCC
Q 008843 184 TEG 186 (551)
Q Consensus 184 ~~G 186 (551)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 765
No 428
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.26 E-value=8.9e-12 Score=139.00 Aligned_cols=79 Identities=25% Similarity=0.342 Sum_probs=69.5
Q ss_pred cCCCCChHHhHHHHHHHHHh----------hCCceEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHH
Q 008843 106 KVRGISGGEKKRLSLACELI----------ASPSVIYADEPT-TGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVY 174 (551)
Q Consensus 106 ~~~~LSGGerqRvsIa~~L~----------~~p~illLDEPt-sGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~ 174 (551)
.+..||||||||++||++|+ .+|++++||||| ++||+.....+.+.|+++ .|.|||+++|++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 45789999999999999887 599999999998 789999999999999998 5889999999964 44
Q ss_pred hhcccEEEEcC-CeE
Q 008843 175 FKFDDIVLLTE-GKL 188 (551)
Q Consensus 175 ~~~D~v~lL~~-G~i 188 (551)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 67899999975 554
No 429
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=1.5e-11 Score=146.35 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=74.7
Q ss_pred CCcCCCCChHHhHHHHHHHHHhh----------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhH
Q 008843 104 DAKVRGISGGEKKRLSLACELIA----------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173 (551)
Q Consensus 104 ~~~~~~LSGGerqRvsIa~~L~~----------~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i 173 (551)
++.++.|||||++|++||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|++. ..
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~ 1023 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FR 1023 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HH
Confidence 45678999999999999999986 79999999999999999999999999999888999999999974 67
Q ss_pred HhhcccEEEEcCC
Q 008843 174 YFKFDDIVLLTEG 186 (551)
Q Consensus 174 ~~~~D~v~lL~~G 186 (551)
...+|+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 7889999999653
No 430
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.25 E-value=6.2e-12 Score=122.82 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=42.7
Q ss_pred HhHHHHHHHHHhhCCceEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 008843 114 EKKRLSLACELIASPSVIYADEPT-----TGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 114 erqRvsIa~~L~~~p~illLDEPt-----sGLD~~~~~~i~~~L~~la~ 157 (551)
|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999975
No 431
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.23 E-value=1.5e-11 Score=126.78 Aligned_cols=96 Identities=26% Similarity=0.284 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 008843 84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVI 163 (551)
Q Consensus 84 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi 163 (551)
..+++++.+.|.+..|.. +..|||||-||.+||.+.+.+.++.++|||.+-||...+..-...++.+....+=||
T Consensus 193 ~~~~~~~~~~L~~~~~re-----~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiI 267 (592)
T KOG0063|consen 193 NKEEVCDQLDLNNLLDRE-----VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYII 267 (592)
T ss_pred cHHHHHHHHHHhhHHHhh-----hhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEE
Confidence 456778888886655544 557999999999999999999999999999999999999999999999998899999
Q ss_pred EEecCCchhHHhhcccEEEEcC
Q 008843 164 CSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 164 ~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
++.||.+ ....+.|-+..|..
T Consensus 268 VVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 268 VVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred EEEeech-HHHhhhcceeEEec
Confidence 9999975 56677888888853
No 432
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.19 E-value=2.5e-10 Score=110.92 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008843 375 YALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSL 454 (551)
Q Consensus 375 Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~~s~~~A~~~~~~~ 454 (551)
-+.+.++++|.+..++..+++.++...+.|++.|+++. +++.+++++++..++..++|.+++++.++...+ +..+.
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHH
Confidence 35567899999999999999999999999999999864 566777778888889999999999999876544 44455
Q ss_pred HHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHHhcCC
Q 008843 455 MTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSG 498 (551)
Q Consensus 455 ~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~nef~g 498 (551)
+.++++++|.+.|.+.+|.|++|+.+++|.+|+.+++-...+.|
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~ 176 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG 176 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC
Confidence 56777789999999999999999999999999999997776654
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.15 E-value=3.8e-11 Score=137.29 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=57.0
Q ss_pred CCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCCch
Q 008843 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQDGHTVICSIHQPRG 171 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~~g~tvi~~~H~~~~ 171 (551)
.+.+|+|++++..|++.+ .+|+++++|||++|+|+.....+ ..+++.+.+.|.++|++||++.-
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 346999999999998876 89999999999999999999998 57888888889999999999653
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.15 E-value=3.3e-10 Score=125.26 Aligned_cols=136 Identities=25% Similarity=0.398 Sum_probs=103.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHH------HHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhC-
Q 008843 55 FSQLTVRETLSLAAELQLPEILSVEERDEYVNS------LLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS- 127 (551)
Q Consensus 55 ~~~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~------~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~- 127 (551)
+..|++.|.+.|...+.+.. ....-.+....+ .|-.+||.- .-.++....|||||.||+-+|..+=++
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~Y----LtL~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGY----LTLSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCc----ccccccCCCcChhHHHHHHHHHHhcccc
Confidence 45688999999988776422 111111222223 344456632 223556778999999999999999776
Q ss_pred -CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCCc
Q 008843 128 -PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARDE 197 (551)
Q Consensus 128 -p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 197 (551)
-=+++||||+-||-+..-..+++.|++|++.|-|+|++.||+ +....+|+|+=+ ..|++++.|++++.
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i 575 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEEL 575 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHH
Confidence 246799999999999999999999999999999999999995 466678999987 46899999999873
No 435
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.12 E-value=1.6e-10 Score=113.10 Aligned_cols=64 Identities=33% Similarity=0.516 Sum_probs=54.7
Q ss_pred CCCCChHHhHHHHHHHHHhhCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 008843 107 VRGISGGEKKRLSLACELIASP---SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~~~p---~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~ 170 (551)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-+|++||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 4567999999999999988776 899999999999999999999999888776889999999874
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.11 E-value=6.6e-10 Score=105.64 Aligned_cols=81 Identities=17% Similarity=0.071 Sum_probs=66.2
Q ss_pred CCcCCCCChHHhH------HHHHHHHHhhCCceEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch---
Q 008843 104 DAKVRGISGGEKK------RLSLACELIASPSVIYADEPTTGLD---AFQAEKVMEALRQLAQDGHTVICSIHQPRG--- 171 (551)
Q Consensus 104 ~~~~~~LSGGerq------RvsIa~~L~~~p~illLDEPtsGLD---~~~~~~i~~~L~~la~~g~tvi~~~H~~~~--- 171 (551)
+..+..+|+||+| +.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+...
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~ 145 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGT 145 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCc
Confidence 3455678999998 4444455667999999999999999 888888889999998889999999998653
Q ss_pred -----hHHhhcccEEEEc
Q 008843 172 -----SVYFKFDDIVLLT 184 (551)
Q Consensus 172 -----~i~~~~D~v~lL~ 184 (551)
.+...+|.++.|+
T Consensus 146 ~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 146 GFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCcCceeEeeeEEEEEE
Confidence 2567889999886
No 437
>PRK03918 chromosome segregation protein; Provisional
Probab=99.08 E-value=2.3e-10 Score=134.37 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=68.8
Q ss_pred CcCCCCChHHhHH------HHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcc
Q 008843 105 AKVRGISGGEKKR------LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178 (551)
Q Consensus 105 ~~~~~LSGGerqR------vsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D 178 (551)
..+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.++..+.+||++||++. +...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCC
Confidence 3567899999995 55556788999999999999999999999999999998877889999999963 567899
Q ss_pred cEEEEc
Q 008843 179 DIVLLT 184 (551)
Q Consensus 179 ~v~lL~ 184 (551)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999996
No 438
>PRK15066 inner membrane transport permease; Provisional
Probab=99.07 E-value=2.9e-08 Score=99.85 Aligned_cols=204 Identities=13% Similarity=0.151 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHhcCC-CC-ChhhHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 008843 284 WRQFWLLLRRAWMQASRDGPT-NKVRARMSIASAIIFGSVFWRM-GR-SQTSIQD--RMGLLQVAAINTAMAALTKTVGV 358 (551)
Q Consensus 284 ~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~~ll~G~~f~~~-~~-~~~~~~~--~~g~lf~~~~~~~~~~~~~~i~~ 358 (551)
|+-++.+.+|+++...||+.. ...-+++.++..+++|.++-.. +. +..+... -.|.+-+.....+. ......
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~---~~~~~~ 83 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSY---SNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 667889999999999999854 3344455556667777665321 11 1111111 12333222222222 222222
Q ss_pred HHHhHH--HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 008843 359 FPKERA--IVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLT 436 (551)
Q Consensus 359 f~~er~--v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~ 436 (551)
+..+|. .+ ++...--.++..+.+++++...-...+..++...+.+...|.+.. ....++..+++..++....|++
T Consensus 84 i~~~~~~~~~-~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 84 FFSAKFQRNI-EELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHhhhH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 333331 11 111122357888999999988777666665555554444466543 2223333333333333445888
Q ss_pred HHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHH
Q 008843 437 VGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCI 493 (551)
Q Consensus 437 i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~ 493 (551)
+|.+.++.+.+..+.++++.+++..||.+.|.+++|.|++|+.++||+.|..|++=.
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~ 217 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRY 217 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHH
Confidence 888899988888899999999999999999999999999999999999999998843
No 439
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.06 E-value=7.7e-10 Score=103.25 Aligned_cols=68 Identities=24% Similarity=0.363 Sum_probs=56.1
Q ss_pred ccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 008843 102 VGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 102 vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~ 170 (551)
+|.+....-|-||-=---+.+ =.++..+.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~-rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHN-RFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred cCCcchhhhccchHHHHHHHH-HhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 445556678999865433333 45678899999999999999999999999999999999999999873
No 440
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.06 E-value=4.8e-10 Score=133.10 Aligned_cols=80 Identities=25% Similarity=0.215 Sum_probs=68.4
Q ss_pred CcCCCCChHHhHHHHHHHHHhh--------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhh
Q 008843 105 AKVRGISGGEKKRLSLACELIA--------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176 (551)
Q Consensus 105 ~~~~~LSGGerqRvsIa~~L~~--------~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~ 176 (551)
+.++.|||||+++++||++|+. +|++||+||||+|||+.+...+++.|+.+++.|+||++++|.+ ......
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 5678999999999999999996 8999999999999999999999999999998899999999974 233444
Q ss_pred cccEEEEcC
Q 008843 177 FDDIVLLTE 185 (551)
Q Consensus 177 ~D~v~lL~~ 185 (551)
-.+|.|-+.
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 445555543
No 441
>PRK13695 putative NTPase; Provisional
Probab=99.01 E-value=8.9e-10 Score=104.18 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCCCChHHhHHHHHHHHHhhCCceEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 107 VRGISGGEKKRLSLACELIASPSVIYADEP--TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~~~p~illLDEP--tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
...+||+|+.+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+....|++..+.
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~ 149 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRP 149 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccC
Confidence 446999999999999999999999999995 44444 445667777667799999999983 4556789999999
Q ss_pred CCeEEEecC
Q 008843 185 EGKLVYAGP 193 (551)
Q Consensus 185 ~G~iv~~G~ 193 (551)
+|++.+.-+
T Consensus 150 ~~~i~~~~~ 158 (174)
T PRK13695 150 GGRVYELTP 158 (174)
T ss_pred CcEEEEEcc
Confidence 999876643
No 442
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.00 E-value=3.8e-10 Score=129.44 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=65.0
Q ss_pred CCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME-ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
.+.+|+|++|++.|++++ .+|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++. .....+|+..+. +
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~ 464 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-N 464 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-E
Confidence 457999999999999988 8999999999999999999998864 67788888999999999954 333444554443 4
Q ss_pred CeEEEe
Q 008843 186 GKLVYA 191 (551)
Q Consensus 186 G~iv~~ 191 (551)
+++.+.
T Consensus 465 ~~~~~d 470 (782)
T PRK00409 465 ASVEFD 470 (782)
T ss_pred EEEEEe
Confidence 555553
No 443
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.97 E-value=1.2e-09 Score=109.00 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=63.6
Q ss_pred cCCCCChHH--------hHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCchhHHhh
Q 008843 106 KVRGISGGE--------KKRLSLACELIASPSVIYADEPTTGLDAFQAEK-VMEALRQLAQDGHTVICSIHQPRGSVYFK 176 (551)
Q Consensus 106 ~~~~LSGGe--------rqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~-i~~~L~~la~~g~tvi~~~H~~~~~i~~~ 176 (551)
..+.+|||| +||+++|+++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~ 199 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRI 199 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCC
Confidence 345689999 9999999999999999999 999999755544 54 5555546789999999864 4567
Q ss_pred cccEEEEcCCeE
Q 008843 177 FDDIVLLTEGKL 188 (551)
Q Consensus 177 ~D~v~lL~~G~i 188 (551)
+|.|.+|+.|++
T Consensus 200 ~paI~vl~s~sr 211 (249)
T cd01128 200 FPAIDILKSGTR 211 (249)
T ss_pred CCeEEEcCCCCc
Confidence 899999999987
No 444
>PRK01156 chromosome segregation protein; Provisional
Probab=98.96 E-value=1.9e-09 Score=126.91 Aligned_cols=77 Identities=23% Similarity=0.252 Sum_probs=66.6
Q ss_pred cCCCCChHHhHHHHH------HHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEecCCchhHHhh
Q 008843 106 KVRGISGGEKKRLSL------ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QD-G-HTVICSIHQPRGSVYFK 176 (551)
Q Consensus 106 ~~~~LSGGerqRvsI------a~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~-g-~tvi~~~H~~~~~i~~~ 176 (551)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.++... .. | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 578899999999975 489999999999999999999999999999998654 33 3 48999999974 4468
Q ss_pred cccEEEEc
Q 008843 177 FDDIVLLT 184 (551)
Q Consensus 177 ~D~v~lL~ 184 (551)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999996
No 445
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.96 E-value=4.7e-09 Score=103.89 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCChHHhHHHHHHHHHh----hCCceEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCCEEEEEecCCch------hHH
Q 008843 109 GISGGEKKRLSLACELI----ASPSVIYADEPTTGL----DAFQAEKVMEALRQLAQDGHTVICSIHQPRG------SVY 174 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~----~~p~illLDEPtsGL----D~~~~~~i~~~L~~la~~g~tvi~~~H~~~~------~i~ 174 (551)
.+|+++.++-.+.+.+- .+|+++++||||+++ |+....++.+.+++++++|.|+++++|+... .+.
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~ 174 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILR 174 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEE
Confidence 36777655544444333 369999999999999 8888889999999998888877776554321 123
Q ss_pred hhcccEEEEc
Q 008843 175 FKFDDIVLLT 184 (551)
Q Consensus 175 ~~~D~v~lL~ 184 (551)
.++|-++.|+
T Consensus 175 ~~~DgvI~L~ 184 (230)
T PRK08533 175 TAATMLIRLE 184 (230)
T ss_pred EeeeEEEEEE
Confidence 4567777775
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.89 E-value=3e-09 Score=97.78 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=48.8
Q ss_pred CCChHHhHHHHHHHHHhhCCceEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchh
Q 008843 109 GISGGEKKRLSLACELIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~ 172 (551)
..+.++.++...+.+...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345666677888888899999999999994 4555556666666666556689999999987644
No 447
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.88 E-value=2.6e-09 Score=128.77 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=67.5
Q ss_pred CcCCCCChHHhHHHHHHHHHh----hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccE
Q 008843 105 AKVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDI 180 (551)
Q Consensus 105 ~~~~~LSGGerqRvsIa~~L~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v 180 (551)
..+..||||||+|++||++++ .+|++++|||||+|||+.+...+.++|+.+++ +.++|++||++. ....||++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhH
Confidence 467899999999999999985 67799999999999999999999999999875 478999999975 34669998
Q ss_pred EEEc
Q 008843 181 VLLT 184 (551)
Q Consensus 181 ~lL~ 184 (551)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8763
No 448
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=3.8e-09 Score=128.48 Aligned_cols=69 Identities=29% Similarity=0.332 Sum_probs=61.1
Q ss_pred CCCCChHHhH------HHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCchhHHh
Q 008843 107 VRGISGGEKK------RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-----DGHTVICSIHQPRGSVYF 175 (551)
Q Consensus 107 ~~~LSGGerq------RvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-----~g~tvi~~~H~~~~~i~~ 175 (551)
.+.||||||| |++||++++.+|++++|||||+|||+.+...+.+.|.++.. .|.+||++||++. .+..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHH
Confidence 4689999999 99999999999999999999999999999999999988742 4789999999964 5555
Q ss_pred h
Q 008843 176 K 176 (551)
Q Consensus 176 ~ 176 (551)
+
T Consensus 1276 ~ 1276 (1311)
T TIGR00606 1276 L 1276 (1311)
T ss_pred H
Confidence 4
No 449
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=1.7e-08 Score=99.24 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCCc
Q 008843 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQD-GHTVICSIHQPR 170 (551)
Q Consensus 114 erqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~~-g~tvi~~~H~~~ 170 (551)
|-+|++-...-+.+|+++++|||.+|.|+.....+ ...++.+.+. +.++|++||++.
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 34444444445678999999999999998777775 5677777766 889999999964
No 450
>PRK00064 recF recombination protein F; Reviewed
Probab=98.82 E-value=9.1e-09 Score=108.59 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=65.8
Q ss_pred cCCCCChHHhHHHHHHHHHh---------hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhh
Q 008843 106 KVRGISGGEKKRLSLACELI---------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176 (551)
Q Consensus 106 ~~~~LSGGerqRvsIa~~L~---------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~ 176 (551)
....+|+||+|++.||+.|+ .+|+++++|||+++||+..+..+++.++++ +..+++++|++. .+...
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence 34689999999999999886 699999999999999999999999988764 457889999864 34344
Q ss_pred c--ccEEEEcCCeE
Q 008843 177 F--DDIVLLTEGKL 188 (551)
Q Consensus 177 ~--D~v~lL~~G~i 188 (551)
+ ++++.+++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 47889999986
No 451
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.82 E-value=1.2e-07 Score=87.78 Aligned_cols=132 Identities=12% Similarity=-0.051 Sum_probs=98.3
Q ss_pred HHHHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchH--HHHHHHHHHHHHHHHHHHHHH
Q 008843 358 VFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLS--RFGKFCGIVTVESFAASAMGL 435 (551)
Q Consensus 358 ~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~--~f~~f~~~~~l~~~~~~~~g~ 435 (551)
..-+|+.++.|-+..-. +++.|+++|++...-..+++.++..++.+. .|.+.... ..+.++.+..+.......++.
T Consensus 13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~ 90 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVM 90 (152)
T ss_pred HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467788888887764 788999999999999988888776666654 48876532 223333344445555666667
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHH
Q 008843 436 TVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLC 492 (551)
Q Consensus 436 ~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~ 492 (551)
.++...++.+..+ ...++..|+...+|.+.|.+++|.|++|+.+++|++|+.+++=
T Consensus 91 ~~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 91 AMALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 7766566655433 4566778888999999999999999999999999999999873
No 452
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.80 E-value=3.2e-08 Score=114.70 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=59.3
Q ss_pred hhCCceEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchhH--------HhhcccEEEEcCCeEEEec
Q 008843 125 IASPSVIYADEPTTGL-DAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV--------YFKFDDIVLLTEGKLVYAG 192 (551)
Q Consensus 125 ~~~p~illLDEPtsGL-D~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i--------~~~~D~v~lL~~G~iv~~G 192 (551)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+|.... ...||+.++|.+|++...|
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~ 726 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPG 726 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccc
Confidence 5799999999999999 799999999999999988999999999986432 3579999999999876544
No 453
>PRK02224 chromosome segregation protein; Provisional
Probab=98.78 E-value=1.3e-08 Score=119.51 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=67.0
Q ss_pred cCCCCChHHhH------HHHHHHHHhhC-----C-ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCchh
Q 008843 106 KVRGISGGEKK------RLSLACELIAS-----P-SVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIHQPRGS 172 (551)
Q Consensus 106 ~~~~LSGGerq------RvsIa~~L~~~-----p-~illLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~~~H~~~~~ 172 (551)
.+..||||||+ |++++++++.+ | +++++||||++||+.....+++.|+.++..|. +||++||++.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~-- 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE-- 855 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--
Confidence 35789999999 89999988864 3 67999999999999999999999999987665 8999999974
Q ss_pred HHhhcccEEEEcC
Q 008843 173 VYFKFDDIVLLTE 185 (551)
Q Consensus 173 i~~~~D~v~lL~~ 185 (551)
....+|+++.+..
T Consensus 856 ~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 LVGAADDLVRVEK 868 (880)
T ss_pred HHHhcCeeEEeec
Confidence 3456999999964
No 454
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.78 E-value=1e-07 Score=102.45 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=52.0
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 134 DEP--TTGLDAFQAEKVMEALRQLAQ--DGH-----TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 134 DEP--tsGLD~~~~~~i~~~L~~la~--~g~-----tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|| |+|+|+.....+.++++++.. +|. ||++.+|+.++ ..+|++..+.+|+++..++..+
T Consensus 272 ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 272 GEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 454 789999999999999999983 675 99999999863 6799999999999999988765
No 455
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.78 E-value=2.4e-08 Score=103.15 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=51.9
Q ss_pred HHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 120 LACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 120 Ia~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+..+|-.+|+++++|||.+ .+..+.++.+. .|. +++.|+|..+ .....||+..|..|++...|.+.+
T Consensus 211 l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~ 278 (308)
T TIGR02788 211 LQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFA 278 (308)
T ss_pred HHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHH
Confidence 4456778999999999996 34566777766 454 6799999975 455589999999998888787765
No 456
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.77 E-value=1.1e-08 Score=123.39 Aligned_cols=76 Identities=22% Similarity=0.231 Sum_probs=67.8
Q ss_pred cCCCCChHHhHHHHHHHHHhh----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEE
Q 008843 106 KVRGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV 181 (551)
Q Consensus 106 ~~~~LSGGerqRvsIa~~L~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~ 181 (551)
.+..||||||++++||.+++. +|++++||||++|||+..+..+.++|+++++ +..+|++||++. ....+|+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 467899999999999999985 7899999999999999999999999999865 478999999963 567899998
Q ss_pred EEc
Q 008843 182 LLT 184 (551)
Q Consensus 182 lL~ 184 (551)
.+.
T Consensus 1148 ~~~ 1150 (1164)
T TIGR02169 1148 GVT 1150 (1164)
T ss_pred eEE
Confidence 874
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.67 E-value=7.8e-08 Score=93.01 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=42.3
Q ss_pred HHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 119 sIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
+++++|..+|+++++|||. |..+...+ .+.+..|..++.++|.++. ....||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778888999999999996 55543333 3455679999999999753 35678887663
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.62 E-value=1.1e-07 Score=94.69 Aligned_cols=130 Identities=27% Similarity=0.370 Sum_probs=80.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECC-EeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-KPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g-~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
.||+|+|||||.--++--.. +|.=...+ ... ....++-|+.=|+ +.+
T Consensus 7 ~g~~G~GKS~lal~la~~va-------~G~~~~g~~~~~-~~~~~Vlyi~~Ed------------------------~~~ 54 (239)
T cd01125 7 VAPGGTGKSSLLLVLALAMA-------LGKNLFGGGLKV-TEPGRVVYLSAED------------------------PRE 54 (239)
T ss_pred EcCCCCCHHHHHHHHHHHHh-------cCccccCCcccc-CCCceEEEEECCC------------------------CHH
Confidence 49999999999977764332 12211111 111 1123456655332 123
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHH----------------HHhhCCceEEEeCCCC-----
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLAC----------------ELIASPSVIYADEPTT----- 138 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~----------------~L~~~p~illLDEPts----- 138 (551)
+..+++.++.+.+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 55 ~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~ 126 (239)
T cd01125 55 EIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGV 126 (239)
T ss_pred HHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCC
Confidence 34556666666666543332221 1245555554443 335799999999 765
Q ss_pred -CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc
Q 008843 139 -GLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPR 170 (551)
Q Consensus 139 -GLD~~~~~~i~~~L~~la~-~g~tvi~~~H~~~ 170 (551)
.+|+.....+++.|+++++ .|.+|+++.|..-
T Consensus 127 ~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 127 SENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999999999985 4889999999853
No 459
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.61 E-value=3.5e-08 Score=96.72 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=46.0
Q ss_pred HhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEecCCc
Q 008843 114 EKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-LRQLAQD-GHTVICSIHQPR 170 (551)
Q Consensus 114 erqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~-L~~la~~-g~tvi~~~H~~~ 170 (551)
|-+|++-....+.+|+++++|||.+|+|+.....+... ++.+.+. +.++|++||++.
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 34444444445578999999999999999999998887 7888765 899999999964
No 460
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.57 E-value=4.8e-07 Score=89.66 Aligned_cols=76 Identities=22% Similarity=0.140 Sum_probs=58.3
Q ss_pred CCChHHhHHHHHHHHHhh--CCceEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchh------HHhhc
Q 008843 109 GISGGEKKRLSLACELIA--SPSVIYADEPTTG---LDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS------VYFKF 177 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~~--~p~illLDEPtsG---LD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~------i~~~~ 177 (551)
..|.++++.+.....++. +|+++++||||+. .|.....++++.++.+++.|.|+++++|++... +..++
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 356788999999999997 9999999999964 455555566666777777899999999986531 45566
Q ss_pred ccEEEEc
Q 008843 178 DDIVLLT 184 (551)
Q Consensus 178 D~v~lL~ 184 (551)
|.++.|+
T Consensus 180 DgvI~L~ 186 (234)
T PRK06067 180 DVYLKLR 186 (234)
T ss_pred EEEEEEE
Confidence 7777775
No 461
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=9.8e-08 Score=100.80 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=55.5
Q ss_pred CCCChHHhHHHHHHHHHhh---------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 008843 108 RGISGGEKKRLSLACELIA---------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~~---------~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~ 170 (551)
..+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|++. |.+|++++|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 4689999999999999999 99999999999999999999999999764 779999999864
No 462
>PRK14079 recF recombination protein F; Provisional
Probab=98.54 E-value=1.5e-07 Score=98.90 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=62.9
Q ss_pred CCCChHHhHHHHHHHHHh---------hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcc
Q 008843 108 RGISGGEKKRLSLACELI---------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~---------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D 178 (551)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+++.|... ..++|.+++.| ..+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCc
Confidence 467999999999999999 899999999999999999999999888653 24566666554 3589
Q ss_pred cEEEEcCCeEEE
Q 008843 179 DIVLLTEGKLVY 190 (551)
Q Consensus 179 ~v~lL~~G~iv~ 190 (551)
+++.+.+|++.-
T Consensus 334 ~~~~~~~~~~~~ 345 (349)
T PRK14079 334 LTLRIEAGVFTP 345 (349)
T ss_pred eEEEEeccEecC
Confidence 999999987763
No 463
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.54 E-value=3.6e-06 Score=84.25 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=97.1
Q ss_pred hHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Q 008843 362 ERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTVG-AM 440 (551)
Q Consensus 362 er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~-a~ 440 (551)
++..+.|=..+...+ ..+++++.+.......+...+...+..+..|.. ....+..+..++.+......++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333 556777777766666666655555555566632 234455555666666677778888666 35
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHHhcCCC
Q 008843 441 VPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGL 499 (551)
Q Consensus 441 ~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~nef~g~ 499 (551)
.++.+.+..+..++..++..++|.+.|.+.+|.|++|+.+++|..|+.+++-.....+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~ 252 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGW 252 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCC
Confidence 66678888888899999999999999999999999999999999999999966555443
No 464
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.53 E-value=3.9e-08 Score=85.08 Aligned_cols=53 Identities=21% Similarity=0.148 Sum_probs=40.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLA 67 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~ 67 (551)
+||||||||||++++. +|++.++|.++... .+.++|++|+ +++ -|++|||.+.
T Consensus 21 ~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~~Ni~~~ 78 (107)
T cd00820 21 TGDSGIGKTELALELI-----------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLRLNIFLI 78 (107)
T ss_pred EcCCCCCHHHHHHHhh-----------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHHhhceee
Confidence 5999999999999986 37789999876432 2346777777 444 3999999884
No 465
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.53 E-value=2.4e-07 Score=109.19 Aligned_cols=79 Identities=29% Similarity=0.394 Sum_probs=70.5
Q ss_pred CcCCCCChHHhHHHHHHHHHh------hC--CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhh
Q 008843 105 AKVRGISGGEKKRLSLACELI------AS--PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFK 176 (551)
Q Consensus 105 ~~~~~LSGGerqRvsIa~~L~------~~--p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~ 176 (551)
..+..|||||+-.++||.+|+ .+ -++|||||||..||+.+...+++.|..+...+.+|++|||++ ++...
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 367899999999998888876 35 589999999999999999999999999998899999999985 67788
Q ss_pred cccEEEEcC
Q 008843 177 FDDIVLLTE 185 (551)
Q Consensus 177 ~D~v~lL~~ 185 (551)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998853
No 466
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.47 E-value=3.6e-07 Score=97.62 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=93.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|+||+|||||+++|++..+++ .|.|.+.|+.. .+|+|.+....
T Consensus 162 ~G~sG~GKTtLl~~Ia~~~~~~-----~gvI~~iGerg-------------------~ev~e~~~~~l------------ 205 (432)
T PRK06793 162 FAGSGVGKSTLLGMIAKNAKAD-----INVISLVGERG-------------------REVKDFIRKEL------------ 205 (432)
T ss_pred ECCCCCChHHHHHHHhccCCCC-----eEEEEeCCCCc-------------------ccHHHHHHHHh------------
Confidence 4899999999999999998765 56665555432 35655543211
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHh-------hCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-------ASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~-------~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
..-|+. ++.+ =....+-|.|+|+|+..+...+ .++-++++|+||++.|+. .++-..+.
T Consensus 206 ---------~~~gl~---~tvv-v~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~ 270 (432)
T PRK06793 206 ---------GEEGMR---KSVV-VVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVK 270 (432)
T ss_pred ---------hhcccc---eeEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhc
Confidence 111221 1111 0124578999999999998888 789999999999999996 55655666
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
+....|.+..+.+|.+ .+ ++|.-...+|.+...+.
T Consensus 271 e~p~~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 271 ELPIGGKTLLMESYMK--KL---LERSGKTQKGSITGIYT 305 (432)
T ss_pred CCCCCCeeeeeeccch--hH---HHHhccCCCcceEEEEE
Confidence 6654588888888853 23 44555567888765544
No 467
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.40 E-value=4.9e-06 Score=73.39 Aligned_cols=60 Identities=32% Similarity=0.262 Sum_probs=45.8
Q ss_pred CCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCCEEEEEec
Q 008843 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME------ALRQLAQDGHTVICSIH 167 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~------~L~~la~~g~tvi~~~H 167 (551)
....+++..+..+.++--.+|+++++||+..-.+......... ........+..+|+++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 3567777888777777777789999999999999988887764 22233345678888888
No 468
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.33 E-value=8.3e-06 Score=95.28 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=47.8
Q ss_pred HHHHHhhCCceEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 008843 120 LACELIASPSVIYADEPTTGL-DAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (551)
Q Consensus 120 Ia~~L~~~p~illLDEPtsGL-D~~~~~~i~~~L~~la~~g~tvi~~~H~~~~ 171 (551)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+|..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 677788999999999999999 7999999999999999889999999999864
No 469
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.30 E-value=9.5e-07 Score=107.49 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=53.8
Q ss_pred CcCCCCChHHhHHHH----HHHH--------HhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 008843 105 AKVRGISGGEKKRLS----LACE--------LIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168 (551)
Q Consensus 105 ~~~~~LSGGerqRvs----Ia~~--------L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~ 168 (551)
...++||||||||+. +|++ +..+|++++||||++|||+.++..++++++++ |.++|+++|.
T Consensus 1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 346899999999996 5644 55899999999999999999999999999888 7889999886
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.18 E-value=8.1e-06 Score=85.70 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=42.4
Q ss_pred HHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE
Q 008843 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 119 sIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
.+..+|-.+|+++++||+. |..++...++ .+..|.+|+.++|..+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3566788899999999997 8887765444 3567999999999854 33556777655
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.15 E-value=8.5e-07 Score=97.30 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=54.1
Q ss_pred CCCCChHHhHHHHHH--HHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchh-------H-Hhh
Q 008843 107 VRGISGGEKKRLSLA--CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS-------V-YFK 176 (551)
Q Consensus 107 ~~~LSGGerqRvsIa--~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~-------i-~~~ 176 (551)
.+.+|+|++|||.|+ .++..+|+.. ...+..+.++++.+++.|.|+|+++|++... + ..+
T Consensus 113 ~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~l 182 (484)
T TIGR02655 113 NYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFV 182 (484)
T ss_pred HHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEe
Confidence 457999999999999 6666665433 4677889999999998899999999986421 2 567
Q ss_pred cccEEEEc
Q 008843 177 FDDIVLLT 184 (551)
Q Consensus 177 ~D~v~lL~ 184 (551)
+|.|+.|+
T Consensus 183 aDgVI~L~ 190 (484)
T TIGR02655 183 SDNVVILR 190 (484)
T ss_pred eeeEEEEE
Confidence 89999886
No 472
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.13 E-value=4.7e-06 Score=70.15 Aligned_cols=50 Identities=36% Similarity=0.516 Sum_probs=38.8
Q ss_pred CcCCCCChHHh-HHHHHHHHHh------h------CCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 105 AKVRGISGGEK-KRLSLACELI------A------SPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 105 ~~~~~LSGGer-qRvsIa~~L~------~------~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
+..+++||||| ..+.++.+++ . .|++++||||+++||+..+..++++|++
T Consensus 28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 34678999999 4455554443 2 3789999999999999999999999874
No 473
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.13 E-value=7.9e-06 Score=88.67 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=77.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||+||||++..|++..... .|. .+++++.+|. ...++.|+|.+.+...... ...
T Consensus 262 vGpnGvGKTTTiaKLA~~~~~~-----~G~------------~kV~LI~~Dt---~RigA~EQLr~~AeilGVp---v~~ 318 (484)
T PRK06995 262 MGPTGVGKTTTTAKLAARCVMR-----HGA------------SKVALLTTDS---YRIGGHEQLRIYGKILGVP---VHA 318 (484)
T ss_pred ECCCCccHHHHHHHHHHHHHHh-----cCC------------CeEEEEeCCc---cchhHHHHHHHHHHHhCCC---eec
Confidence 6999999999999999976432 221 2578888875 3468999999877653211 111
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhH-HHHHHHHHhhCC-----ceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK-RLSLACELIASP-----SVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq-RvsIa~~L~~~p-----~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.....+..++..++.+..+.. +.....+++. .+.-..+++.++ .+|+||.++.+ ..+.+.++.
T Consensus 319 ~~~~~Dl~~aL~~L~d~d~VL-----IDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~~ 387 (484)
T PRK06995 319 VKDAADLRLALSELRNKHIVL-----IDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVVQA 387 (484)
T ss_pred cCCchhHHHHHHhccCCCeEE-----eCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHHHH
Confidence 112233344555665543222 2233223332 234444555555 68999999987 334445555
Q ss_pred HHhCCCEEEEEec
Q 008843 155 LAQDGHTVICSIH 167 (551)
Q Consensus 155 la~~g~tvi~~~H 167 (551)
....+.+-++.|+
T Consensus 388 f~~~~~~g~IlTK 400 (484)
T PRK06995 388 YRGPGLAGCILTK 400 (484)
T ss_pred hccCCCCEEEEeC
Confidence 5545655445554
No 474
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.11 E-value=0.00054 Score=68.33 Aligned_cols=188 Identities=12% Similarity=0.020 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008843 288 WLLLRRAWMQASRDGPTNKVRARMSIASAIIFGSVFWRM----GRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKER 363 (551)
Q Consensus 288 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~----~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~f~~er 363 (551)
+.+.||+++...|.|..+..-.+..++.|+.. ..|.+. ..+..+.+.-.+...+ +.....++. +.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~l-~~------- 70 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPAI-TM------- 70 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHHH-HH-------
Confidence 46789999999999999887777666666442 222111 1111222222111111 111111111 12
Q ss_pred HHHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---hhhhhhhcccccc---cchHHHHHHHHHHHHHHHH
Q 008843 364 AIVDRERAKGSY--------ALGPYLLSKLIAEIPVGAAFPL---MFGAVLYPMARLH---PTLSRFGKFCGIVTVESFA 429 (551)
Q Consensus 364 ~v~~rE~~~g~Y--------~~~~y~la~~l~~lp~~~~~~~---if~~i~Y~~~gl~---~~~~~f~~f~~~~~l~~~~ 429 (551)
..+.+||++|.. +...++++|.++-..+.++..+ ++....++ .|.+ .+...++......++...+
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSV 149 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHH
Confidence 345556666653 5678899999988755443222 12222221 1221 2344444444444555667
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCc--cccchhhhccCHHHHHHHH
Q 008843 430 ASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNT--PIIFRWIPRVSLIRWAFQG 490 (551)
Q Consensus 430 ~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~W~~yiSp~~y~~ea 490 (551)
..++|.++|+++.+...|..++..+.. .++.|+.. ..++ |++.+|+.|+||..|-.+.
T Consensus 150 ~~aig~~iSsl~~~q~~a~~~~~~~~~--~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~ 209 (240)
T TIGR03518 150 YTAIGLFASSLTENQIVAFIIAVFLCF--LFYFGFDG-LASLLWGGSAYTISELGLSYHYESI 209 (240)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHH--HHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHH
Confidence 789999999999998887655443322 22223211 2333 8889999999998775443
No 475
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.00 E-value=1e-05 Score=77.38 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=47.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc--ccceEEEEccC--CCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--KAYKFAYVRQE--DLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~--~~~~i~yv~Q~--~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|..+++ .|.+.+.+..... ....++++.|. +...+..|+.+.+..+.+.+
T Consensus 31 ~G~tGSGKTTll~aL~~~i~~~-----~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 31 SGGTGSGKTTLLNALLAFIPPD-----ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred ECCCCCCHHHHHHHHHhhcCCC-----CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccC
Confidence 5999999999999999999876 6888887753221 12335555554 34567789999888776543
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.94 E-value=8.5e-06 Score=78.51 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=61.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHH-cCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE-LQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~-l~~~~~~~~~ 79 (551)
.||||||||||.++|++.+. .|. +.++++|+.+ ..++..+....... ...+....
T Consensus 5 ~G~~GsGKSTl~~~l~~~l~-------~~~--------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 60 (198)
T cd02023 5 AGGSGSGKTTVAEEIIEQLG-------NPK--------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAFD-- 60 (198)
T ss_pred ECCCCCCHHHHHHHHHHHhC-------CCC--------------eEEEEecccc-cccccccHHHhccCCCCCCCccc--
Confidence 49999999999999999862 122 2334444322 22233332221110 11111111
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCH
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDA 142 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~ 142 (551)
.+...+.++.+...+.. +.+....|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 61 --~~~~~~~l~~l~~~~~~-----~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 --FDLLISHLQDLKNGKSV-----EIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --HHHHHHHHHHHHCCCCE-----eccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12334566666543222 22345678888776555 5688999999999999876
No 477
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.85 E-value=3.9e-05 Score=92.87 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=26.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK 36 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~ 36 (551)
.|++|+|||||++++++..... .+|.+.+++.
T Consensus 213 ~G~gGiGKTTLA~~l~~~l~~~----F~g~vfv~~~ 244 (1153)
T PLN03210 213 WGSSGIGKTTIARALFSRLSRQ----FQSSVFIDRA 244 (1153)
T ss_pred EcCCCCchHHHHHHHHHHHhhc----CCeEEEeecc
Confidence 4999999999999998876542 4788888763
No 478
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.84 E-value=1.3e-05 Score=78.93 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=26.8
Q ss_pred HHHHHHHHHH-HHhCCCEEEEEecCCc-------hhHHhhcccEEEEc
Q 008843 145 AEKVMEALRQ-LAQDGHTVICSIHQPR-------GSVYFKFDDIVLLT 184 (551)
Q Consensus 145 ~~~i~~~L~~-la~~g~tvi~~~H~~~-------~~i~~~~D~v~lL~ 184 (551)
..+++..|++ +.+.|.|+++++|... ..+..++|.|+.|+
T Consensus 141 ~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 141 ARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 3455554554 4567999999999643 13456788888886
No 479
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00014 Score=78.99 Aligned_cols=97 Identities=12% Similarity=0.175 Sum_probs=65.5
Q ss_pred hCCceEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEE-EEcCCeEEEecCCCCc-----h
Q 008843 126 ASPSVIYADEPTTGLDAF-QAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV-LLTEGKLVYAGPARDE-----P 198 (551)
Q Consensus 126 ~~p~illLDEPtsGLD~~-~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~-lL~~G~iv~~G~~~~~-----~ 198 (551)
.+|++|++|||...+|.. ++.++...+..+.+.|+.+|++++++..++..+.|++. -+..|-++...+|+.+ +
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 379999999999988765 45778899999888888888877444456655556655 3677888888888763 2
Q ss_pred hhHHhhcCCCCCCCCCHHHHHHHhhc
Q 008843 199 LAYFSRFGYTCPDHVNPAEFLADLIS 224 (551)
Q Consensus 199 ~~~f~~~g~~~p~~~~~ad~~~~~~~ 224 (551)
....+..+...|+ +..+|+.+-..
T Consensus 273 ~~~~~~~~~~l~~--ev~~~Ia~~~~ 296 (440)
T PRK14088 273 RKMLEIEHGELPE--EVLNFVAENVD 296 (440)
T ss_pred HHHHHhcCCCCCH--HHHHHHHhccc
Confidence 2233334555443 44566655443
No 480
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.76 E-value=4e-05 Score=89.49 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=47.1
Q ss_pred CCCChHHhHHHHHHHHHh--hCCceEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchhHHhhccc
Q 008843 108 RGISGGEKKRLSLACELI--ASPSVIYADEP---TTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDD 179 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~--~~p~illLDEP---tsGLD~~~~~~i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~ 179 (551)
+|.|-=+.....++..|- ++++++++||| |+.+|..+ .....++.+.+. |.+++++||.. ++..++++
T Consensus 665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 456665555555555544 48999999999 88888444 344566666655 57999999983 56666665
No 481
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.75 E-value=0.00031 Score=66.96 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHH--HHHHHhh-CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLS--LACELIA-SPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 84 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvs--Ia~~L~~-~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
.+.+.++..++.- -.++ .+...+|+||++++. +.+.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~-nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVL-TKADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEE-ECcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445566555421 1222 245568999999977 4444433 3443 399999999999999999988765
No 482
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.73 E-value=6.8e-06 Score=84.22 Aligned_cols=127 Identities=19% Similarity=0.290 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008843 362 ERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMAR---LHPTLSRFGKFCGIVTVESFAASAMGLTVG 438 (551)
Q Consensus 362 er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~g---l~~~~~~f~~f~~~~~l~~~~~~~~g~~i~ 438 (551)
|+.+..|-+..| .+...|++++.+..+...++..+++..+ +.| ++.. .++..++++++..++..+++.+++
T Consensus 187 ~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~is 260 (344)
T PF12698_consen 187 ESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFGFLIS 260 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666 5888999999999999988887766664 334 4433 455555677778888899999999
Q ss_pred HccCCHHHHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHH
Q 008843 439 AMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCIN 494 (551)
Q Consensus 439 a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~n 494 (551)
.++++...|..+++++..+++.++|.+.+.+++|.+++|+.++.|..|..+++...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~ 316 (344)
T PF12698_consen 261 SFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNI 316 (344)
T ss_dssp --------------------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999988888887767777777778899999999999999999988887443
No 483
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.0033 Score=63.49 Aligned_cols=207 Identities=10% Similarity=0.080 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHH-HHHH----HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008843 283 WWRQFWLLLRRAWMQASRDGPTNK-VRAR----MSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVG 357 (551)
Q Consensus 283 ~~~Q~~~L~~R~~~~~~Rd~~~~~-~r~~----~~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~ 357 (551)
.++....|.+|..+...|+...-. --++ +.+++++++|.++-+-+.+ --..--.|.+...... .+......
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~-~~~~l~~G~~~w~f~~---~~i~~~~~ 91 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLN-FLAYLLAGLILWFFFS---EAISEGAG 91 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHH---HHHHhHHH
Confidence 457778888999998888764221 2223 4444555555555332111 1112222332111111 12233455
Q ss_pred HHHHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008843 358 VFPKERAIVDRERAKGSYALGPYLLSKLIAEIPVGAAFPLMFGAVLYPMARLHPTLSRFGKFCGIVTVESFAASAMGLTV 437 (551)
Q Consensus 358 ~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i 437 (551)
.+.+..+++.|- -.++..+.+++++.++--..+..++....+-+.-+.+ + ..+..+...+.+..+.+.++|+++
T Consensus 92 s~~~n~~li~k~----~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 92 SVVANAALIKKI----NFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred HhhhhHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 565656555443 2488999999999998766665544444333333332 2 344444444455555567778877
Q ss_pred HHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHHhcCCC
Q 008843 438 GAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSGL 499 (551)
Q Consensus 438 ~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~nef~g~ 499 (551)
|.++.-..--..+.+.++-+++..+|-+-+.+.+|.-++|+.++||+.+-.|.+=..-+.|.
T Consensus 166 a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~ 227 (263)
T COG1682 166 ASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGD 227 (263)
T ss_pred HhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCC
Confidence 77765543333455666778888899999999999999999999999999998865555443
No 484
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.70 E-value=3.6e-05 Score=70.50 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHh-----hCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-----ASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 84 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~-----~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
.+.+.++..+.. -..+.+ +...++++++++........ ..++++ |+|++|.....++.+.|.++
T Consensus 101 ~~~~~l~~~~~~---vi~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIP---FLVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCC---EEEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 344556665531 012222 34567899988876665532 345555 99999999999999988764
No 485
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.70 E-value=0.0042 Score=62.46 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=56.2
Q ss_pred HHHHHhcCCC--------CChHHHHHHHHHHHHHHHHH---HHHh-hhh-hhhc-ccccccchHHHHHHHHHHHHHHH--
Q 008843 365 IVDRERAKGS--------YALGPYLLSKLIAEIPVGAA---FPLM-FGA-VLYP-MARLHPTLSRFGKFCGIVTVESF-- 428 (551)
Q Consensus 365 v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~---~~~i-f~~-i~Y~-~~gl~~~~~~f~~f~~~~~l~~~-- 428 (551)
.+.+|+++|. ++...++++|.++.+...++ ..++ +.+ ..++ ..|.+.+...+........+..+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 4556666653 67789999999998877332 1111 111 1122 23344455555443333222222
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 008843 429 -AASAMGLTVGAMVPTTEAAMAVGPSLMTVFI 459 (551)
Q Consensus 429 -~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~ 459 (551)
+..+++.++|+++++...|+.++..+.....
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~ 200 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLF 200 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH
Confidence 4589999999999998888887766555443
No 486
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.69 E-value=0.00037 Score=81.30 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=44.1
Q ss_pred HHhhCCceEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 008843 123 ELIASPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (551)
Q Consensus 123 ~L~~~p~illLDEPtsGLD-~~~~~~i~~~L~~la~~g~tvi~~~H~~~~ 171 (551)
.+..+|.++++|||...|| +..+..+.+.++++++.|..++++||+|..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 888999999999999899999999999854
No 487
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=7.1e-05 Score=66.61 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCc
Q 008843 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-----DGHTVICSIHQPR 170 (551)
Q Consensus 115 rqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-----~g~tvi~~~H~~~ 170 (551)
++..........++.++++||.-.. +......+.+.+..... .+..+|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444455556678999999998765 56667778888877753 4678888888653
No 488
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.67 E-value=1.4e-05 Score=74.91 Aligned_cols=57 Identities=23% Similarity=0.181 Sum_probs=36.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---c-ceEEEEccCCCCCCCCCHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---A-YKFAYVRQEDLFFSQLTVRETLSL 66 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~-~~i~yv~Q~~~l~~~lTV~e~l~~ 66 (551)
||+||||||||+++|++++ |.+.++|...... . ...|+.+|+....+.+++.++..+
T Consensus 1 ~G~sGsGKSTla~~la~~l---------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 7999999999999999986 3456666433211 1 224677776544444455444444
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.66 E-value=8e-05 Score=84.00 Aligned_cols=108 Identities=22% Similarity=0.276 Sum_probs=64.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCc---ceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRL---HLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~---~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||+|||||.+++.+..++...- .-.+-+.+||.......+. + ++-.+. ..
T Consensus 181 ~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~---------------i-~~~llg-------~~- 236 (615)
T TIGR02903 181 YGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE---------------V-TNPLLG-------SV- 236 (615)
T ss_pred ECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH---------------H-hHHhcC-------Cc-
Confidence 4999999999999999876432100 0023355555433100000 0 011111 01
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.+...+.+.+.++..|+.+.++ ..+..+||| +||+|| +..||...+..+++.|++
T Consensus 237 ~~~~~~~a~~~l~~~gl~~~~~-----g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 237 HDPIYQGARRDLAETGVPEPKT-----GLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred cHHHHHHHHHHHHHcCCCchhc-----CchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 1112233455677788854433 345678888 999999 799999999999988865
No 490
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.65 E-value=0.00041 Score=74.90 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=50.2
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 133 ADEP--TTGLDAFQAEKVMEALRQLAQDGH-------TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 133 LDEP--tsGLD~~~~~~i~~~L~~la~~g~-------tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|| +.|+|+.....+-+++.+....+. ||++..||.. ...+|++.-+.+|+++.....++
T Consensus 276 ~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 276 AGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred cCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 4675 559999999999999999886666 8888888864 34679999999999999887655
No 491
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.59 E-value=6.8e-05 Score=71.73 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=61.1
Q ss_pred hHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch-hHHhhcccEEEEcCC
Q 008843 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG-SVYFKFDDIVLLTEG 186 (551)
Q Consensus 112 GGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~-~i~~~~D~v~lL~~G 186 (551)
.|+-.|..||..+..+|+.+..+| +.+||....++.+.+++..++|.+|++.+|.... .....||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378999999999999999988777 8899999999999998887667899999998632 356678988887543
No 492
>PRK13764 ATPase; Provisional
Probab=97.54 E-value=0.00051 Score=76.61 Aligned_cols=63 Identities=19% Similarity=0.357 Sum_probs=48.2
Q ss_pred HhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------------CCchhHHhhcccEEEEcCCeE
Q 008843 124 LIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH---------------QPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 124 L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H---------------~~~~~i~~~~D~v~lL~~G~i 188 (551)
|..+|+++++||.-..-| ++++..++..|..++.|.| +. ..+...+|+++.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence 678999999999985322 4455555556888999999 54 356678999999999999
Q ss_pred --EEecCC
Q 008843 189 --VYAGPA 194 (551)
Q Consensus 189 --v~~G~~ 194 (551)
+|.+..
T Consensus 393 ~~v~~~~~ 400 (602)
T PRK13764 393 SKVYDLEF 400 (602)
T ss_pred EEEEeeee
Confidence 776653
No 493
>PRK06893 DNA replication initiation factor; Validated
Probab=97.51 E-value=0.00037 Score=68.97 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=55.1
Q ss_pred hCCceEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhc-ccE-EEEcCCeEEEecCCCCc-hhhH
Q 008843 126 ASPSVIYADEPTTGL-DAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF-DDI-VLLTEGKLVYAGPARDE-PLAY 201 (551)
Q Consensus 126 ~~p~illLDEPtsGL-D~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~-D~v-~lL~~G~iv~~G~~~~~-~~~~ 201 (551)
.++++|++||..... |......+.+++.+..+.|+++++++++-........ +++ --+..|.++...+++++ ....
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 368999999998754 6666778889998887777777655444222222211 111 11345777777777663 2222
Q ss_pred Hh----hcCCCCCCCCCHHHHHHHhh
Q 008843 202 FS----RFGYTCPDHVNPAEFLADLI 223 (551)
Q Consensus 202 f~----~~g~~~p~~~~~ad~~~~~~ 223 (551)
+. ..|+..+ ....+|+..-.
T Consensus 170 L~~~a~~~~l~l~--~~v~~~L~~~~ 193 (229)
T PRK06893 170 LQRNAYQRGIELS--DEVANFLLKRL 193 (229)
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHhc
Confidence 22 3344333 24455665543
No 494
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.47 E-value=5.3e-05 Score=71.92 Aligned_cols=57 Identities=21% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSL 66 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~ 66 (551)
+|+||||||||+++|+|++.+ +.++|.++... ....|+.+|+...++..++.++..+
T Consensus 9 ~G~sGsGKSTl~~~la~~l~~---------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 9 MGVSGSGKSLIGSKIAALFSA---------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred ECCCCCCHHHHHHHHHHhcCC---------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 599999999999999998753 35666665332 1124666666544455555555444
No 495
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.45 E-value=9.9e-05 Score=79.19 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=92.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-----------ccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----------KAYKFAYVRQEDLFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 69 (551)
+|+||+|||||+++|+|..+++ ..+-|.|-.+|.++.+ .+..+++++|++..+..+++.|++.+.+.
T Consensus 161 ~G~sGaGKSTLl~~I~g~~~~d--v~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAE 238 (434)
T PRK07196 161 MAGSGVGKSVLLGMITRYTQAD--VVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIAT 238 (434)
T ss_pred ECCCCCCccHHHHHHhcccCCC--eEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHH
Confidence 5999999999999999988765 2233666666654432 02248999999999999999999988776
Q ss_pred cCCCCCCC----HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCC--CCCCCHH
Q 008843 70 LQLPEILS----VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP--TTGLDAF 143 (551)
Q Consensus 70 l~~~~~~~----~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEP--tsGLD~~ 143 (551)
........ -+.. .+..+...++++ .+.|| +.|-.+.
T Consensus 239 yfr~~g~~Vll~~Dsl-tr~a~A~REisl-------------------------------------~~ge~P~~~Gyp~s 280 (434)
T PRK07196 239 YYRDKGHDVLLLVDSL-TRYAMAQREIAL-------------------------------------SLGEPPATKGYPPS 280 (434)
T ss_pred HhhhccCCEEEeecch-hHHHhhhhHHHH-------------------------------------hcCCCCcccCcCHH
Confidence 42110000 0000 011111112211 12344 3477777
Q ss_pred HHHHHHHHHHHHHh---CC-CEEEEEecCCchhH-HhhcccEEEEcCCeEEEe
Q 008843 144 QAEKVMEALRQLAQ---DG-HTVICSIHQPRGSV-YFKFDDIVLLTEGKLVYA 191 (551)
Q Consensus 144 ~~~~i~~~L~~la~---~g-~tvi~~~H~~~~~i-~~~~D~v~lL~~G~iv~~ 191 (551)
.-..+-+++.+... .| .|.+-+..-+.+++ .-..|.+.-+-||+++..
T Consensus 281 vf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 281 AFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred HHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 77777777777632 23 37777776554433 234678888889999853
No 496
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.42 E-value=0.00034 Score=65.01 Aligned_cols=64 Identities=23% Similarity=0.189 Sum_probs=38.4
Q ss_pred hHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH-HHHH-hCC-CEEEEEecCCchhHHhhcccE
Q 008843 112 GGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL-RQLA-QDG-HTVICSIHQPRGSVYFKFDDI 180 (551)
Q Consensus 112 GGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L-~~la-~~g-~tvi~~~H~~~~~i~~~~D~v 180 (551)
-+++++..+++++...|-++++ +..|......+.+.. +... ..+ ..+.++.|+ ...+..+++.+
T Consensus 106 ~~~~~~~~~~~~~~~~p~ivv~----NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~gl~~l~~~l 172 (176)
T cd01881 106 LKLYDLETILGLLTAKPVIYVL----NKIDLDDAEELEEELVRELALEEGAEVVPISAKT-EEGLDELIRAI 172 (176)
T ss_pred HHHhhhhhHHHHHhhCCeEEEE----EchhcCchhHHHHHHHHHHhcCCCCCEEEEehhh-hcCHHHHHHHH
Confidence 3455666677778889999998 888876655554431 1122 223 355555555 44566666654
No 497
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.42 E-value=0.04 Score=55.73 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccccCCCCccccchhhhccCHHHHHHHHHHHHhcCC
Q 008843 426 ESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRVSLIRWAFQGLCINEFSG 498 (551)
Q Consensus 426 ~~~~~~~~g~~i~a~~~s~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~eal~~nef~g 498 (551)
..+.+.++|+++|++..-..-...+.++++.+++..+|-+-+.+.+|.+++|+.+.||+.+..|+.=..-+.|
T Consensus 158 ~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~ 230 (264)
T PRK15176 158 AWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEG 230 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcC
Confidence 3444556666666554332223344456777888888988888999999999999999999999886666655
No 498
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.38 E-value=0.00012 Score=78.82 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=27.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceee-EEEECCEeCCc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-LLEVNGKPSSN 40 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G-~i~i~g~~~~~ 40 (551)
+|||||||||||+ +|+..+. +| +|.++|.++..
T Consensus 38 ~G~SGsGKSTLLr--~~l~~~~-----sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 38 CGSSGDGKSEILA--ENKRKFS-----EGYEFFLDATHSFS 71 (504)
T ss_pred ECCCCCCHHHHHh--cCCCCCC-----CCCEEEECCEECCC
Confidence 6999999999999 6777665 45 89999998754
No 499
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.28 E-value=0.00015 Score=71.69 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=40.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeE----EEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGL----LEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~----i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l 70 (551)
.||||||||||.+.|++.+++. .|. +.+++...... ....+++++.+ ....+++.+.+.+...+
T Consensus 39 ~G~~GsGKTTl~~~L~~~l~~~-----~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 39 AGPPGAGKSTLAEFLEALLQQD-----GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred ECCCCCCHHHHHHHHHHHhhhc-----cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 4999999999999999999875 455 44454332211 12356666533 33556666665554444
No 500
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.28 E-value=0.00053 Score=74.65 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=43.4
Q ss_pred hCCceEEEeCCCCC----CC-----HHHHHHHHHHHHHHH-hCCCEEEEEecCCch-------hHHhhcccEEEEcCCe
Q 008843 126 ASPSVIYADEPTTG----LD-----AFQAEKVMEALRQLA-QDGHTVICSIHQPRG-------SVYFKFDDIVLLTEGK 187 (551)
Q Consensus 126 ~~p~illLDEPtsG----LD-----~~~~~~i~~~L~~la-~~g~tvi~~~H~~~~-------~i~~~~D~v~lL~~G~ 187 (551)
.+|+++++|.-++= ++ .....+++..|.+++ +.|.|++++.|...+ .+.+++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987641 11 223456666777776 568999999996432 2567899999997654
Done!