Query 008843
Match_columns 551
No_of_seqs 395 out of 2627
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 2.4E-42 8.2E-47 341.1 23.1 185 1-196 37-231 (235)
2 3tui_C Methionine import ATP-b 100.0 1.3E-42 4.4E-47 361.3 21.8 182 1-196 60-250 (366)
3 3rlf_A Maltose/maltodextrin im 100.0 4.9E-42 1.7E-46 359.1 22.3 182 1-196 35-220 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 2.1E-42 7E-47 359.6 18.6 182 1-196 36-225 (359)
5 2pcj_A ABC transporter, lipopr 100.0 2.3E-41 7.9E-46 331.8 22.6 179 1-194 36-223 (224)
6 3gfo_A Cobalt import ATP-bindi 100.0 1E-41 3.5E-46 343.8 19.8 182 1-196 40-230 (275)
7 1b0u_A Histidine permease; ABC 100.0 1.2E-41 4E-46 341.5 20.0 182 1-196 38-239 (262)
8 2olj_A Amino acid ABC transpor 100.0 2.4E-41 8.4E-46 339.0 21.5 182 1-196 56-245 (263)
9 1z47_A CYSA, putative ABC-tran 100.0 2.9E-41 9.8E-46 351.1 22.0 182 1-196 47-232 (355)
10 1g6h_A High-affinity branched- 100.0 2E-41 6.9E-46 339.0 19.1 185 1-196 39-239 (257)
11 2it1_A 362AA long hypothetical 100.0 3.6E-41 1.2E-45 351.4 21.4 182 1-196 35-220 (362)
12 1vpl_A ABC transporter, ATP-bi 100.0 3.9E-41 1.3E-45 336.4 20.3 182 1-196 47-232 (256)
13 1g29_1 MALK, maltose transport 100.0 6.6E-41 2.3E-45 351.1 22.7 182 1-196 35-226 (372)
14 2yyz_A Sugar ABC transporter, 100.0 3.2E-41 1.1E-45 351.5 20.0 182 1-196 35-220 (359)
15 2onk_A Molybdate/tungstate ABC 100.0 2.9E-41 1E-45 334.2 17.9 180 1-196 30-213 (240)
16 1oxx_K GLCV, glucose, ABC tran 100.0 3.8E-41 1.3E-45 350.8 19.5 182 1-196 37-227 (353)
17 1ji0_A ABC transporter; ATP bi 100.0 4.7E-41 1.6E-45 333.0 18.1 181 1-196 38-225 (240)
18 1v43_A Sugar-binding transport 100.0 5.9E-41 2E-45 351.1 19.2 182 1-196 43-228 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 6.5E-41 2.2E-45 348.0 18.7 179 1-196 32-214 (348)
20 4g1u_C Hemin import ATP-bindin 100.0 1.1E-40 3.8E-45 334.9 18.4 180 1-196 43-234 (266)
21 2yz2_A Putative ABC transporte 100.0 3.9E-40 1.4E-44 331.2 17.3 181 1-196 39-224 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 1.1E-39 3.8E-44 325.0 16.9 184 1-195 35-229 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-39 4.2E-44 329.5 13.7 185 1-196 53-249 (279)
24 2zu0_C Probable ATP-dependent 100.0 9.4E-39 3.2E-43 321.3 20.0 185 1-196 52-251 (267)
25 2qi9_C Vitamin B12 import ATP- 100.0 9E-39 3.1E-43 318.0 17.9 176 1-196 32-219 (249)
26 2nq2_C Hypothetical ABC transp 100.0 1.7E-38 5.8E-43 316.9 19.6 176 1-196 37-214 (253)
27 2ff7_A Alpha-hemolysin translo 100.0 1.1E-38 3.8E-43 317.1 16.2 178 1-196 41-229 (247)
28 2ixe_A Antigen peptide transpo 100.0 4.8E-39 1.6E-43 324.0 13.5 179 1-196 51-242 (271)
29 3nh6_A ATP-binding cassette SU 100.0 3.2E-38 1.1E-42 322.5 16.9 177 1-196 86-274 (306)
30 1sgw_A Putative ABC transporte 100.0 1.7E-38 5.8E-43 308.9 13.0 170 1-188 41-210 (214)
31 1mv5_A LMRA, multidrug resista 100.0 1.3E-38 4.4E-43 316.0 12.0 179 1-196 34-223 (243)
32 2pjz_A Hypothetical protein ST 100.0 8.2E-38 2.8E-42 313.4 15.7 172 1-196 36-212 (263)
33 2ghi_A Transport protein; mult 100.0 4.6E-37 1.6E-41 307.8 15.9 176 1-196 52-239 (260)
34 2pze_A Cystic fibrosis transme 100.0 9.7E-37 3.3E-41 299.9 14.2 168 1-196 40-215 (229)
35 2cbz_A Multidrug resistance-as 100.0 1.6E-36 5.3E-41 299.9 13.6 171 1-196 37-214 (237)
36 3gd7_A Fusion complex of cysti 100.0 5.2E-37 1.8E-41 323.0 8.6 176 1-196 53-239 (390)
37 2yl4_A ATP-binding cassette SU 100.0 1.7E-35 6E-40 329.4 19.9 180 1-196 376-567 (595)
38 3b60_A Lipid A export ATP-bind 100.0 2.4E-35 8.3E-40 327.5 18.4 178 1-196 375-564 (582)
39 3b5x_A Lipid A export ATP-bind 100.0 1.7E-35 5.9E-40 328.6 16.0 178 1-196 375-564 (582)
40 4a82_A Cystic fibrosis transme 100.0 3.7E-35 1.3E-39 325.6 16.1 177 1-196 373-561 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-35 4.2E-40 329.8 11.1 177 1-196 375-563 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 2.8E-35 9.4E-40 327.8 11.2 177 1-196 387-575 (598)
43 2bbs_A Cystic fibrosis transme 100.0 6.7E-35 2.3E-39 296.2 11.7 167 1-196 70-244 (290)
44 4f4c_A Multidrug resistance pr 100.0 4.5E-33 1.5E-37 333.9 12.8 179 1-196 1111-1301(1321)
45 3bk7_A ABC transporter ATP-bin 100.0 5.1E-32 1.8E-36 300.6 17.4 170 1-196 388-560 (607)
46 1yqt_A RNAse L inhibitor; ATP- 100.0 4.4E-32 1.5E-36 297.9 15.4 170 1-196 318-490 (538)
47 4f4c_A Multidrug resistance pr 100.0 4E-32 1.4E-36 325.7 15.5 177 1-196 450-638 (1321)
48 3g5u_A MCG1178, multidrug resi 100.0 3.8E-32 1.3E-36 325.2 13.5 179 1-196 422-610 (1284)
49 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-31 4.7E-36 293.5 16.3 172 1-196 300-474 (538)
50 3g5u_A MCG1178, multidrug resi 100.0 5.8E-32 2E-36 323.6 13.9 179 1-196 1065-1255(1284)
51 3j16_B RLI1P; ribosome recycli 100.0 5E-31 1.7E-35 292.3 18.8 171 1-197 384-557 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 1.2E-30 4E-35 289.8 8.4 164 1-187 123-305 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-30 6.5E-35 284.9 9.4 164 1-187 53-235 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 7.5E-30 2.6E-34 287.8 12.0 189 1-196 50-295 (670)
55 3ozx_A RNAse L inhibitor; ATP 100.0 2.5E-29 8.4E-34 275.6 9.4 165 1-190 31-217 (538)
56 3ux8_A Excinuclease ABC, A sub 100.0 2.3E-28 7.8E-33 275.7 15.3 125 57-196 504-637 (670)
57 2iw3_A Elongation factor 3A; a 100.0 2.2E-28 7.6E-33 280.9 14.9 163 1-196 467-632 (986)
58 2iw3_A Elongation factor 3A; a 99.9 1.7E-28 5.8E-33 281.8 11.1 175 1-193 705-981 (986)
59 3j16_B RLI1P; ribosome recycli 99.9 3E-28 1E-32 270.1 10.6 170 1-191 109-302 (608)
60 3pih_A Uvrabc system protein A 99.9 7.1E-26 2.4E-30 259.9 19.2 124 58-196 767-899 (916)
61 2r6f_A Excinuclease ABC subuni 99.9 3E-26 1E-30 261.5 14.2 125 57-196 806-939 (972)
62 4aby_A DNA repair protein RECN 99.9 2.5E-25 8.5E-30 236.5 15.1 80 110-192 296-381 (415)
63 2vf7_A UVRA2, excinuclease ABC 99.9 2.1E-25 7.1E-30 254.0 14.5 108 83-196 708-824 (842)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 5E-28 1.7E-32 260.3 -6.9 169 1-196 144-335 (460)
65 2ygr_A Uvrabc system protein A 99.9 1.1E-25 3.6E-30 257.8 11.8 124 58-196 825-957 (993)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.7E-23 1.3E-27 216.7 16.3 84 105-190 275-364 (365)
67 1e69_A Chromosome segregation 99.9 8.7E-23 3E-27 210.3 10.5 89 104-195 214-309 (322)
68 1ye8_A Protein THEP1, hypothet 99.9 5E-23 1.7E-27 194.3 6.8 143 1-190 6-159 (178)
69 3b85_A Phosphate starvation-in 99.9 6.5E-25 2.2E-29 212.3 -6.7 125 1-170 28-159 (208)
70 1tq4_A IIGP1, interferon-induc 99.8 2.3E-23 7.9E-28 220.6 -6.9 152 1-181 75-248 (413)
71 3sop_A Neuronal-specific septi 99.8 1.7E-22 5.8E-27 203.1 -3.6 141 1-169 8-150 (270)
72 3pih_A Uvrabc system protein A 99.8 1.5E-20 5.1E-25 215.9 8.4 162 10-196 383-557 (916)
73 4gp7_A Metallophosphoesterase; 99.8 2E-21 6.8E-26 181.8 0.1 63 108-170 82-160 (171)
74 3qkt_A DNA double-strand break 99.8 5.2E-19 1.8E-23 183.4 12.9 79 104-184 243-327 (339)
75 2r6f_A Excinuclease ABC subuni 99.8 1E-18 3.5E-23 199.6 16.3 135 55-196 449-597 (972)
76 1znw_A Guanylate kinase, GMP k 99.8 4E-23 1.4E-27 199.2 -17.5 162 1-184 26-202 (207)
77 2vf7_A UVRA2, excinuclease ABC 99.8 2.7E-19 9.2E-24 203.9 8.9 172 4-196 271-472 (842)
78 3b9q_A Chloroplast SRP recepto 99.8 1.9E-20 6.4E-25 191.1 -1.1 156 1-188 106-284 (302)
79 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1E-18 3.5E-23 159.6 9.6 83 104-188 52-142 (148)
80 2ygr_A Uvrabc system protein A 99.7 1.9E-18 6.5E-23 198.0 11.1 136 54-196 465-614 (993)
81 2og2_A Putative signal recogni 99.7 1.7E-19 5.8E-24 187.7 -0.9 156 1-188 163-341 (359)
82 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.4E-18 4.9E-23 179.4 5.0 113 1-188 177-292 (330)
83 2v9p_A Replication protein E1; 99.7 4.6E-21 1.6E-25 195.2 -15.2 138 1-204 132-270 (305)
84 2dpy_A FLII, flagellum-specifi 99.7 2.4E-20 8E-25 199.5 -12.0 156 1-196 163-341 (438)
85 3aez_A Pantothenate kinase; tr 99.7 3.5E-20 1.2E-24 189.9 -10.5 151 1-187 96-246 (312)
86 1tf7_A KAIC; homohexamer, hexa 99.7 2.4E-17 8.1E-22 180.7 8.9 144 1-187 287-444 (525)
87 1cr0_A DNA primase/helicase; R 99.7 2.3E-17 8E-22 167.3 4.5 164 1-188 41-237 (296)
88 2ehv_A Hypothetical protein PH 99.6 1.6E-17 5.4E-22 163.2 -0.6 151 1-184 36-206 (251)
89 1z6g_A Guanylate kinase; struc 99.6 1.5E-19 5.2E-24 175.8 -18.9 155 1-181 29-205 (218)
90 3thx_A DNA mismatch repair pro 99.6 1.8E-15 6E-20 174.6 10.6 87 108-196 720-810 (934)
91 4a74_A DNA repair and recombin 99.6 5.2E-17 1.8E-21 157.4 -1.8 144 1-186 31-200 (231)
92 3asz_A Uridine kinase; cytidin 99.6 2.5E-18 8.7E-23 165.3 -11.6 137 1-170 12-162 (211)
93 3szr_A Interferon-induced GTP- 99.6 8E-17 2.7E-21 179.2 -1.4 156 1-196 51-234 (608)
94 1rj9_A FTSY, signal recognitio 99.6 1.5E-16 5E-21 162.4 -1.1 140 1-170 108-259 (304)
95 2o8b_B DNA mismatch repair pro 99.6 2.8E-16 9.5E-21 183.3 0.1 138 1-194 795-937 (1022)
96 3kta_B Chromosome segregation 99.6 8.5E-15 2.9E-19 137.1 10.1 79 106-187 61-145 (173)
97 1tf7_A KAIC; homohexamer, hexa 99.6 2.8E-16 9.6E-21 172.2 -0.6 147 1-186 45-210 (525)
98 4ad8_A DNA repair protein RECN 99.6 5.1E-15 1.8E-19 161.8 9.3 78 106-186 393-473 (517)
99 2i3b_A HCR-ntpase, human cance 99.6 3.3E-17 1.1E-21 155.8 -7.1 150 1-193 7-170 (189)
100 2obl_A ESCN; ATPase, hydrolase 99.5 1.2E-16 4.2E-21 165.9 -3.5 157 1-196 77-252 (347)
101 2eyu_A Twitching motility prot 99.5 1.3E-15 4.5E-20 152.0 4.0 117 1-185 31-147 (261)
102 2qnr_A Septin-2, protein NEDD5 99.5 3.5E-17 1.2E-21 166.9 -8.1 140 1-170 24-168 (301)
103 1ewq_A DNA mismatch repair pro 99.5 1.1E-15 3.7E-20 173.3 1.6 130 1-193 582-718 (765)
104 2o5v_A DNA replication and rep 99.5 7.5E-15 2.6E-19 152.9 7.6 85 104-196 259-353 (359)
105 2jeo_A Uridine-cytidine kinase 99.5 3.4E-16 1.2E-20 154.5 -3.3 135 1-169 31-165 (245)
106 1pzn_A RAD51, DNA repair and r 99.5 4.5E-16 1.5E-20 161.9 -2.6 150 1-193 137-309 (349)
107 1nlf_A Regulatory protein REPA 99.5 4.3E-14 1.5E-18 142.0 9.7 141 1-170 36-182 (279)
108 3jvv_A Twitching mobility prot 99.5 9.7E-15 3.3E-19 152.0 3.2 59 119-186 188-246 (356)
109 1wb9_A DNA mismatch repair pro 99.5 6.3E-15 2.2E-19 168.0 2.0 141 1-196 613-755 (800)
110 2w0m_A SSO2452; RECA, SSPF, un 99.5 6.7E-15 2.3E-19 142.3 1.1 78 109-186 103-192 (235)
111 3thx_B DNA mismatch repair pro 99.5 7.1E-14 2.4E-18 160.9 8.7 71 107-180 733-805 (918)
112 3auy_A DNA double-strand break 99.4 3.2E-13 1.1E-17 141.4 11.7 77 105-184 276-359 (371)
113 2bdt_A BH3686; alpha-beta prot 99.4 7.8E-17 2.7E-21 152.2 -15.0 162 1-196 8-181 (189)
114 1nij_A Hypothetical protein YJ 99.3 1.2E-16 4.1E-21 164.2 -21.3 147 1-170 10-190 (318)
115 2cvh_A DNA repair and recombin 99.3 5.2E-13 1.8E-17 128.2 5.4 77 110-186 85-185 (220)
116 1w1w_A Structural maintenance 99.3 1.8E-12 6.2E-17 138.3 9.8 76 107-184 331-410 (430)
117 2qag_C Septin-7; cell cycle, c 99.3 5.1E-14 1.7E-18 149.4 -2.7 137 1-169 37-177 (418)
118 1s96_A Guanylate kinase, GMP k 99.3 3.7E-14 1.3E-18 137.8 -4.5 125 1-186 22-151 (219)
119 2bbw_A Adenylate kinase 4, AK4 99.3 1.3E-15 4.4E-20 150.3 -15.6 144 1-158 33-199 (246)
120 1zp6_A Hypothetical protein AT 99.3 5.2E-15 1.8E-19 139.5 -11.6 132 1-157 15-149 (191)
121 2rcn_A Probable GTPase ENGC; Y 99.3 1E-12 3.4E-17 136.4 4.5 123 1-157 221-346 (358)
122 1lw7_A Transcriptional regulat 99.3 1.2E-15 4.1E-20 159.5 -18.3 84 109-196 258-352 (365)
123 1pui_A ENGB, probable GTP-bind 99.2 8.8E-14 3E-18 132.7 -5.9 74 84-161 128-202 (210)
124 2f1r_A Molybdopterin-guanine d 99.2 4.6E-14 1.6E-18 131.9 -8.4 133 1-160 8-164 (171)
125 2ewv_A Twitching motility prot 99.2 2.7E-12 9.3E-17 134.4 2.8 115 1-184 142-257 (372)
126 1sxj_E Activator 1 40 kDa subu 99.2 9.6E-12 3.3E-16 128.5 6.8 150 1-196 42-195 (354)
127 1n0w_A DNA repair protein RAD5 99.2 6.4E-12 2.2E-16 122.4 3.1 77 110-186 99-209 (243)
128 3ec2_A DNA replication protein 99.2 1.1E-11 3.8E-16 115.8 4.2 49 124-172 97-146 (180)
129 2kjq_A DNAA-related protein; s 99.2 1.1E-11 3.8E-16 113.0 3.5 47 125-172 81-128 (149)
130 2yv5_A YJEQ protein; hydrolase 99.1 1.7E-12 6E-17 132.1 -4.3 111 1-123 171-301 (302)
131 3e70_C DPA, signal recognition 99.1 4.8E-12 1.6E-16 130.2 -1.3 133 1-169 135-279 (328)
132 2qag_B Septin-6, protein NEDD5 99.1 5.8E-12 2E-16 133.3 -1.2 157 1-168 48-218 (427)
133 1odf_A YGR205W, hypothetical 3 99.1 2.9E-12 9.8E-17 129.8 -3.8 121 1-144 37-169 (290)
134 2gza_A Type IV secretion syste 99.1 5.8E-11 2E-15 123.9 5.8 118 1-186 181-302 (361)
135 1udx_A The GTP-binding protein 99.0 5.2E-12 1.8E-16 133.9 -4.4 153 1-181 163-320 (416)
136 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1E-12 3.4E-17 138.2 -12.1 162 1-196 26-210 (392)
137 3lda_A DNA repair protein RAD5 98.9 1.3E-09 4.3E-14 115.0 9.1 71 117-187 261-364 (400)
138 2yhs_A FTSY, cell division pro 98.9 1.3E-10 4.4E-15 124.7 0.7 162 1-196 299-476 (503)
139 1p9r_A General secretion pathw 98.9 4.3E-12 1.5E-16 134.7 -11.9 117 1-132 173-314 (418)
140 2qm8_A GTPase/ATPase; G protei 98.9 1.2E-11 4.2E-16 127.8 -9.0 141 1-157 61-260 (337)
141 3c8u_A Fructokinase; YP_612366 98.9 8.1E-12 2.8E-16 119.9 -9.8 140 1-179 28-168 (208)
142 2oap_1 GSPE-2, type II secreti 98.8 1.7E-11 5.8E-16 133.4 -10.2 157 1-176 266-456 (511)
143 1htw_A HI0065; nucleotide-bind 98.8 2.4E-10 8.1E-15 105.2 -2.3 59 1-66 39-97 (158)
144 1u0l_A Probable GTPase ENGC; p 98.8 3.9E-10 1.3E-14 114.6 -1.3 95 1-112 175-294 (301)
145 1in4_A RUVB, holliday junction 98.8 1.1E-10 3.6E-15 120.5 -6.8 132 1-157 57-194 (334)
146 1t9h_A YLOQ, probable GTPase E 98.7 7.1E-10 2.4E-14 112.8 -1.7 105 1-116 179-302 (307)
147 1lvg_A Guanylate kinase, GMP k 98.7 1.2E-12 4.1E-17 125.0 -23.2 57 120-185 116-173 (198)
148 1vma_A Cell division protein F 98.6 1.5E-08 5.1E-13 103.1 3.7 100 1-156 110-212 (306)
149 2x8a_A Nuclear valosin-contain 98.6 5.1E-11 1.7E-15 119.6 -15.2 109 1-138 50-164 (274)
150 2px0_A Flagellar biosynthesis 98.5 1.2E-07 4.3E-12 95.9 7.2 133 1-191 111-247 (296)
151 2ius_A DNA translocase FTSK; n 98.5 3.5E-09 1.2E-13 114.6 -5.2 151 1-170 173-343 (512)
152 2dr3_A UPF0273 protein PH0284; 98.5 6E-07 2.1E-11 87.0 10.8 60 126-185 127-196 (247)
153 1oix_A RAS-related protein RAB 98.5 1.8E-08 6E-13 94.8 -0.4 39 115-155 151-189 (191)
154 3k1j_A LON protease, ATP-depen 98.4 1.1E-08 3.7E-13 113.8 -2.8 140 1-154 66-227 (604)
155 2zr9_A Protein RECA, recombina 98.4 1.4E-07 4.8E-12 97.7 5.3 78 116-193 126-237 (349)
156 1ls1_A Signal recognition part 98.4 3.8E-07 1.3E-11 92.2 7.8 105 1-155 104-209 (295)
157 2r6a_A DNAB helicase, replicat 98.4 1.6E-06 5.3E-11 93.0 12.3 79 108-188 294-401 (454)
158 1iy2_A ATP-dependent metallopr 98.2 9.2E-10 3.2E-14 110.2 -15.7 105 1-130 79-190 (278)
159 1ixz_A ATP-dependent metallopr 98.2 1.2E-09 4.2E-14 107.5 -15.4 105 1-130 55-166 (254)
160 2ce7_A Cell division protein F 98.2 2.6E-06 8.9E-11 91.6 8.5 59 112-170 93-165 (476)
161 2qtf_A Protein HFLX, GTP-bindi 98.2 3.8E-06 1.3E-10 87.4 9.5 147 1-157 185-353 (364)
162 1sq5_A Pantothenate kinase; P- 98.2 1.6E-07 5.3E-12 95.6 -1.0 65 1-71 86-156 (308)
163 2e87_A Hypothetical protein PH 98.1 2.9E-06 9.9E-11 87.9 7.4 62 107-170 229-293 (357)
164 2f9l_A RAB11B, member RAS onco 98.1 1.4E-06 4.8E-11 82.0 4.3 37 118-156 130-166 (199)
165 1qhl_A Protein (cell division 98.1 4E-07 1.4E-11 88.5 -0.4 46 1-51 33-91 (227)
166 2xau_A PRE-mRNA-splicing facto 98.0 6.5E-06 2.2E-10 93.9 8.0 74 106-180 187-262 (773)
167 3tr0_A Guanylate kinase, GMP k 97.9 3.1E-07 1.1E-11 86.7 -4.0 55 1-64 13-72 (205)
168 2z4s_A Chromosomal replication 97.9 6.1E-06 2.1E-10 88.1 5.0 96 126-223 193-295 (440)
169 3hr8_A Protein RECA; alpha and 97.9 3.4E-06 1.2E-10 87.4 1.9 21 1-21 67-87 (356)
170 1fnn_A CDC6P, cell division co 97.8 4.2E-05 1.4E-09 79.0 8.8 44 126-170 124-170 (389)
171 3euj_A Chromosome partition pr 97.8 2.4E-06 8.1E-11 91.9 -0.9 34 1-39 35-68 (483)
172 4eun_A Thermoresistant glucoki 97.6 1.4E-06 4.9E-11 82.4 -5.6 43 1-52 35-81 (200)
173 3b9p_A CG5977-PA, isoform A; A 97.5 0.00034 1.2E-08 69.8 10.8 60 111-170 97-170 (297)
174 1jjv_A Dephospho-COA kinase; P 97.5 6.1E-06 2.1E-10 78.1 -2.2 70 111-184 61-131 (206)
175 4a1f_A DNAB helicase, replicat 97.5 7.6E-05 2.6E-09 76.6 5.5 54 109-167 109-164 (338)
176 1svm_A Large T antigen; AAA+ f 97.5 4.3E-07 1.5E-11 94.9 -12.2 124 1-138 175-312 (377)
177 3a00_A Guanylate kinase, GMP k 97.4 1.6E-05 5.6E-10 74.2 -0.4 22 1-22 7-28 (186)
178 2dhr_A FTSH; AAA+ protein, hex 97.4 8.9E-07 3.1E-11 95.8 -10.7 111 1-138 70-187 (499)
179 1ega_A Protein (GTP-binding pr 97.4 0.00014 4.9E-09 73.3 6.0 64 110-181 101-170 (301)
180 3t34_A Dynamin-related protein 97.4 0.0011 3.6E-08 68.5 12.4 58 109-167 154-212 (360)
181 2qby_A CDC6 homolog 1, cell di 97.2 5.2E-05 1.8E-09 77.9 -0.2 20 1-20 51-70 (386)
182 4e22_A Cytidylate kinase; P-lo 97.1 2.4E-05 8.1E-10 77.0 -3.3 47 1-52 33-96 (252)
183 1kgd_A CASK, peripheral plasma 97.1 0.0001 3.4E-09 68.4 0.7 21 1-21 11-31 (180)
184 2j41_A Guanylate kinase; GMP, 97.1 0.00012 4.2E-09 68.7 1.1 22 1-22 12-33 (207)
185 1l8q_A Chromosomal replication 97.0 0.001 3.5E-08 67.3 7.8 47 125-171 96-143 (324)
186 3kl4_A SRP54, signal recogniti 96.9 0.0015 5.1E-08 69.2 7.5 50 119-168 171-223 (433)
187 2w58_A DNAI, primosome compone 96.9 0.0011 3.7E-08 62.1 5.8 51 125-175 113-165 (202)
188 2dy1_A Elongation factor G; tr 96.8 0.00022 7.6E-09 79.9 0.6 41 125-170 97-137 (665)
189 1v5w_A DMC1, meiotic recombina 96.8 0.0044 1.5E-07 63.5 10.2 54 116-169 204-274 (343)
190 3lnc_A Guanylate kinase, GMP k 96.8 0.00026 8.7E-09 68.2 0.7 20 1-20 33-53 (231)
191 3uie_A Adenylyl-sulfate kinase 96.8 0.00011 3.8E-09 69.2 -1.9 33 1-39 31-65 (200)
192 3lxx_A GTPase IMAP family memb 96.8 0.0082 2.8E-07 57.7 11.3 43 126-168 111-155 (239)
193 3cf0_A Transitional endoplasmi 96.8 0.0013 4.4E-08 66.1 5.7 19 1-19 55-73 (301)
194 3bh0_A DNAB-like replicative h 96.7 0.0029 9.8E-08 64.1 8.1 53 110-167 134-189 (315)
195 2vp4_A Deoxynucleoside kinase; 96.6 0.00028 9.6E-09 68.1 -0.2 29 1-38 26-54 (230)
196 1zu4_A FTSY; GTPase, signal re 96.6 0.00035 1.2E-08 71.3 0.1 60 1-65 111-185 (320)
197 1kag_A SKI, shikimate kinase I 96.6 0.00056 1.9E-08 62.3 1.5 20 1-20 10-29 (173)
198 3tau_A Guanylate kinase, GMP k 96.6 0.0007 2.4E-08 64.2 2.1 21 1-21 14-34 (208)
199 2z43_A DNA repair and recombin 96.6 0.0064 2.2E-07 61.7 9.4 54 115-168 188-257 (324)
200 3kta_A Chromosome segregation 96.5 0.00056 1.9E-08 63.0 1.1 22 1-22 32-53 (182)
201 3ney_A 55 kDa erythrocyte memb 96.5 0.00053 1.8E-08 64.9 0.5 20 1-20 25-44 (197)
202 1rz3_A Hypothetical protein rb 96.4 0.0003 1E-08 66.4 -1.6 31 1-36 28-58 (201)
203 1knq_A Gluconate kinase; ALFA/ 96.4 0.00053 1.8E-08 62.7 -0.1 29 1-38 14-42 (175)
204 1mky_A Probable GTP-binding pr 96.4 0.0023 7.9E-08 67.9 4.7 38 1-38 186-230 (439)
205 3bos_A Putative DNA replicatio 96.3 0.0021 7.2E-08 61.1 3.9 45 126-170 103-149 (242)
206 2qt1_A Nicotinamide riboside k 96.3 0.0015 5.2E-08 61.5 2.7 19 1-19 27-45 (207)
207 2v1u_A Cell division control p 96.3 0.0026 9E-08 65.1 4.7 19 1-19 50-68 (387)
208 3tqc_A Pantothenate kinase; bi 96.2 0.0013 4.4E-08 67.0 1.6 21 1-21 98-118 (321)
209 3cr8_A Sulfate adenylyltranfer 96.2 0.00073 2.5E-08 73.8 -0.4 33 1-38 375-409 (552)
210 3h4m_A Proteasome-activating n 96.2 0.01 3.5E-07 58.4 8.0 46 124-169 107-166 (285)
211 1ypw_A Transitional endoplasmi 96.1 0.0045 1.5E-07 70.8 5.9 20 1-20 244-263 (806)
212 3llm_A ATP-dependent RNA helic 96.1 0.00076 2.6E-08 65.1 -0.5 66 111-178 162-228 (235)
213 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.018 6E-07 55.7 9.1 19 1-19 45-63 (262)
214 3d8b_A Fidgetin-like protein 1 96.0 0.022 7.4E-07 58.6 9.5 19 1-19 123-141 (357)
215 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0026 9E-08 57.1 1.9 17 1-17 29-45 (149)
216 4ad8_A DNA repair protein RECN 95.8 0.00057 1.9E-08 74.2 -3.6 141 1-162 66-246 (517)
217 2gj8_A MNME, tRNA modification 95.7 0.0072 2.5E-07 54.9 4.4 19 1-19 10-28 (172)
218 2www_A Methylmalonic aciduria 95.7 0.0014 4.7E-08 67.5 -0.7 32 1-37 80-111 (349)
219 3lxw_A GTPase IMAP family memb 95.7 0.034 1.2E-06 53.9 9.2 54 114-168 89-148 (247)
220 1cke_A CK, MSSA, protein (cyti 95.6 0.0035 1.2E-07 59.6 1.7 19 1-19 11-29 (227)
221 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.088 3E-06 53.2 11.8 19 1-19 51-69 (322)
222 2qgz_A Helicase loader, putati 95.5 0.0055 1.9E-07 61.9 2.7 51 125-175 212-264 (308)
223 1w1w_A Structural maintenance 95.4 0.0041 1.4E-07 65.7 1.4 22 1-22 32-53 (430)
224 2wjg_A FEOB, ferrous iron tran 95.4 0.0074 2.5E-07 55.0 2.9 18 1-18 13-30 (188)
225 2if2_A Dephospho-COA kinase; a 95.3 0.0046 1.6E-07 57.8 1.2 17 1-17 7-23 (204)
226 1u94_A RECA protein, recombina 95.2 0.12 4E-06 53.2 11.7 75 117-191 129-237 (356)
227 2wji_A Ferrous iron transport 95.1 0.0067 2.3E-07 54.5 1.9 19 1-19 9-27 (165)
228 2qor_A Guanylate kinase; phosp 95.1 0.0059 2E-07 57.4 1.3 20 1-20 18-37 (204)
229 3n70_A Transport activator; si 95.1 0.034 1.2E-06 49.2 6.2 43 127-171 76-118 (145)
230 1np6_A Molybdopterin-guanine d 95.0 0.0068 2.3E-07 56.0 1.6 34 1-36 12-45 (174)
231 3m6a_A ATP-dependent protease 95.0 0.0057 2E-07 66.7 1.2 31 1-36 114-144 (543)
232 2o5v_A DNA replication and rep 95.0 0.0069 2.4E-07 62.6 1.7 39 78-123 128-166 (359)
233 3qks_A DNA double-strand break 94.9 0.0081 2.8E-07 56.7 1.9 18 1-18 29-46 (203)
234 2qag_A Septin-2, protein NEDD5 94.9 0.0038 1.3E-07 64.5 -0.5 20 1-20 43-62 (361)
235 3t61_A Gluconokinase; PSI-biol 94.9 0.0076 2.6E-07 56.3 1.6 19 1-19 24-42 (202)
236 3vaa_A Shikimate kinase, SK; s 94.9 0.0083 2.8E-07 56.1 1.7 19 1-19 31-49 (199)
237 1m7g_A Adenylylsulfate kinase; 94.8 0.0041 1.4E-07 58.8 -0.7 32 1-37 31-64 (211)
238 3kb2_A SPBC2 prophage-derived 94.6 0.011 3.6E-07 53.3 1.8 19 1-19 7-25 (173)
239 2zej_A Dardarin, leucine-rich 94.6 0.01 3.6E-07 54.3 1.7 19 1-19 8-26 (184)
240 3syl_A Protein CBBX; photosynt 94.6 0.097 3.3E-06 51.8 8.8 20 1-20 73-92 (309)
241 3bgw_A DNAB-like replicative h 94.5 0.082 2.8E-06 56.1 8.5 74 109-184 290-393 (444)
242 2pez_A Bifunctional 3'-phospho 94.5 0.012 4E-07 53.9 1.7 21 1-21 11-31 (179)
243 1qhx_A CPT, protein (chloramph 94.4 0.014 4.7E-07 53.1 1.9 20 1-20 9-28 (178)
244 1ex7_A Guanylate kinase; subst 94.4 0.014 4.7E-07 54.6 1.9 20 1-20 7-26 (186)
245 2ohf_A Protein OLA1, GTP-bindi 94.3 0.02 7E-07 59.7 3.3 18 1-18 28-45 (396)
246 2yvu_A Probable adenylyl-sulfa 94.1 0.009 3.1E-07 55.0 0.0 21 1-21 19-39 (186)
247 3nwj_A ATSK2; P loop, shikimat 94.1 0.015 5.2E-07 56.9 1.6 19 1-19 54-72 (250)
248 2i1q_A DNA repair and recombin 94.1 0.16 5.5E-06 51.0 9.4 69 117-185 191-290 (322)
249 2q6t_A DNAB replication FORK h 94.0 0.19 6.6E-06 53.0 10.0 53 109-166 264-317 (444)
250 3ihw_A Centg3; RAS, centaurin, 93.9 0.042 1.5E-06 50.3 4.2 19 1-19 26-44 (184)
251 2p67_A LAO/AO transport system 93.8 0.0087 3E-07 61.3 -0.7 22 1-22 62-83 (341)
252 1via_A Shikimate kinase; struc 93.8 0.021 7.1E-07 52.0 1.9 19 1-19 10-28 (175)
253 2ze6_A Isopentenyl transferase 93.6 0.022 7.4E-07 55.7 1.7 19 1-19 7-25 (253)
254 3cm0_A Adenylate kinase; ATP-b 93.5 0.025 8.4E-07 51.8 1.9 18 1-18 10-27 (186)
255 2p5t_B PEZT; postsegregational 93.5 0.014 4.9E-07 56.8 0.2 31 1-38 38-68 (253)
256 3lw7_A Adenylate kinase relate 93.5 0.028 9.4E-07 50.3 2.1 15 1-15 7-21 (179)
257 2erx_A GTP-binding protein DI- 93.4 0.073 2.5E-06 47.1 4.8 19 1-19 9-27 (172)
258 2fn4_A P23, RAS-related protei 93.4 0.057 1.9E-06 48.3 4.0 19 1-19 15-33 (181)
259 3q72_A GTP-binding protein RAD 93.4 0.043 1.5E-06 48.6 3.2 20 1-20 8-27 (166)
260 1f6b_A SAR1; gtpases, N-termin 93.4 0.036 1.2E-06 51.4 2.8 18 1-18 31-48 (198)
261 1ly1_A Polynucleotide kinase; 93.4 0.031 1.1E-06 50.5 2.2 17 1-17 8-24 (181)
262 3u61_B DNA polymerase accessor 93.3 0.26 8.9E-06 49.2 9.3 42 127-170 105-147 (324)
263 1kht_A Adenylate kinase; phosp 93.3 0.031 1.1E-06 51.0 2.2 19 1-19 9-27 (192)
264 2jaq_A Deoxyguanosine kinase; 93.3 0.031 1.1E-06 51.6 2.2 19 1-19 6-24 (205)
265 1m2o_B GTP-binding protein SAR 93.3 0.042 1.4E-06 50.6 3.1 18 1-18 29-46 (190)
266 1lv7_A FTSH; alpha/beta domain 93.3 0.029 9.9E-07 54.4 2.0 20 1-20 51-70 (257)
267 3k53_A Ferrous iron transport 93.1 0.026 8.8E-07 55.5 1.4 44 136-180 144-188 (271)
268 3trf_A Shikimate kinase, SK; a 93.1 0.031 1.1E-06 51.1 1.8 19 1-19 11-29 (185)
269 3vfd_A Spastin; ATPase, microt 93.1 0.33 1.1E-05 50.1 9.8 19 1-19 154-172 (389)
270 3iij_A Coilin-interacting nucl 93.1 0.032 1.1E-06 50.9 1.8 18 1-18 17-34 (180)
271 3euj_A Chromosome partition pr 92.9 0.14 4.7E-06 54.9 6.8 72 106-184 376-464 (483)
272 4dsu_A GTPase KRAS, isoform 2B 92.9 0.088 3E-06 47.5 4.6 19 1-19 10-28 (189)
273 2ged_A SR-beta, signal recogni 92.9 0.033 1.1E-06 50.9 1.7 19 1-19 54-72 (193)
274 1z2a_A RAS-related protein RAB 92.8 0.034 1.2E-06 49.2 1.6 19 1-19 11-29 (168)
275 4eaq_A DTMP kinase, thymidylat 92.7 0.032 1.1E-06 53.6 1.4 21 1-21 32-52 (229)
276 2rhm_A Putative kinase; P-loop 92.7 0.032 1.1E-06 51.2 1.3 19 1-19 11-29 (193)
277 1vht_A Dephospho-COA kinase; s 92.6 0.041 1.4E-06 51.9 2.0 17 1-17 10-26 (218)
278 1xjc_A MOBB protein homolog; s 92.6 0.038 1.3E-06 50.8 1.7 20 1-20 10-29 (169)
279 2nzj_A GTP-binding protein REM 92.6 0.042 1.5E-06 49.0 2.0 19 1-19 10-28 (175)
280 1nks_A Adenylate kinase; therm 92.6 0.039 1.3E-06 50.4 1.7 20 1-20 7-26 (194)
281 2dyk_A GTP-binding protein; GT 92.6 0.039 1.3E-06 48.4 1.7 19 1-19 7-25 (161)
282 2bov_A RAla, RAS-related prote 92.6 0.099 3.4E-06 48.0 4.5 19 1-19 20-38 (206)
283 4ag6_A VIRB4 ATPase, type IV s 92.5 0.028 9.6E-07 58.3 0.7 45 127-171 262-309 (392)
284 3con_A GTPase NRAS; structural 92.5 0.1 3.5E-06 47.4 4.5 19 1-19 27-45 (190)
285 1u8z_A RAS-related protein RAL 92.5 0.04 1.4E-06 48.5 1.6 19 1-19 10-28 (168)
286 1y63_A LMAJ004144AAA protein; 92.5 0.043 1.5E-06 50.5 1.8 18 1-18 16-33 (184)
287 2ce2_X GTPase HRAS; signaling 92.5 0.034 1.2E-06 48.8 1.1 19 1-19 9-27 (166)
288 1kao_A RAP2A; GTP-binding prot 92.4 0.042 1.4E-06 48.4 1.7 19 1-19 9-27 (167)
289 3r20_A Cytidylate kinase; stru 92.4 0.049 1.7E-06 52.7 2.2 19 1-19 15-33 (233)
290 3q85_A GTP-binding protein REM 92.4 0.047 1.6E-06 48.5 1.9 19 1-19 8-26 (169)
291 1z0j_A RAB-22, RAS-related pro 92.3 0.045 1.5E-06 48.5 1.7 19 1-19 12-30 (170)
292 3t5g_A GTP-binding protein RHE 92.3 0.1 3.5E-06 46.9 4.2 18 1-18 12-29 (181)
293 2a9k_A RAS-related protein RAL 92.2 0.12 4E-06 46.5 4.5 19 1-19 24-42 (187)
294 1ek0_A Protein (GTP-binding pr 92.2 0.045 1.5E-06 48.4 1.6 19 1-19 9-27 (170)
295 1gtv_A TMK, thymidylate kinase 92.2 0.024 8.1E-07 53.1 -0.3 20 1-20 6-25 (214)
296 1gvn_B Zeta; postsegregational 92.2 0.047 1.6E-06 54.4 1.9 19 1-19 39-57 (287)
297 3auy_A DNA double-strand break 92.2 0.044 1.5E-06 56.6 1.7 17 1-17 31-47 (371)
298 3tw8_B RAS-related protein RAB 92.2 0.044 1.5E-06 49.1 1.6 19 1-19 15-33 (181)
299 1z08_A RAS-related protein RAB 92.2 0.046 1.6E-06 48.5 1.7 19 1-19 12-30 (170)
300 2z0h_A DTMP kinase, thymidylat 92.2 0.055 1.9E-06 49.7 2.2 19 1-19 6-24 (197)
301 1c1y_A RAS-related protein RAP 92.1 0.091 3.1E-06 46.2 3.6 19 1-19 9-27 (167)
302 3cbq_A GTP-binding protein REM 92.1 0.076 2.6E-06 49.1 3.1 18 1-18 29-46 (195)
303 1wms_A RAB-9, RAB9, RAS-relate 92.1 0.049 1.7E-06 48.7 1.7 19 1-19 13-31 (177)
304 1ky3_A GTP-binding protein YPT 92.0 0.049 1.7E-06 48.8 1.7 19 1-19 14-32 (182)
305 3b1v_A Ferrous iron uptake tra 92.0 0.052 1.8E-06 53.6 2.0 19 1-19 9-27 (272)
306 2lkc_A Translation initiation 92.0 0.053 1.8E-06 48.5 1.9 19 1-19 14-32 (178)
307 3fb4_A Adenylate kinase; psych 91.9 0.053 1.8E-06 50.9 1.8 19 1-19 6-24 (216)
308 2ffh_A Protein (FFH); SRP54, s 91.9 0.031 1.1E-06 58.9 0.2 33 1-38 104-136 (425)
309 3iby_A Ferrous iron transport 91.9 0.11 3.6E-06 50.8 4.0 19 1-19 7-25 (256)
310 3io5_A Recombination and repai 91.9 0.39 1.3E-05 48.6 8.1 57 112-168 92-171 (333)
311 1fzq_A ADP-ribosylation factor 91.9 0.042 1.4E-06 50.0 1.0 18 1-18 22-39 (181)
312 1g16_A RAS-related protein SEC 91.8 0.045 1.5E-06 48.5 1.1 19 1-19 9-27 (170)
313 1q3t_A Cytidylate kinase; nucl 91.8 0.052 1.8E-06 52.0 1.6 19 1-19 22-40 (236)
314 2plr_A DTMP kinase, probable t 91.8 0.065 2.2E-06 49.7 2.2 20 1-20 10-29 (213)
315 1svi_A GTP-binding protein YSX 91.8 0.046 1.6E-06 49.9 1.2 19 1-19 29-47 (195)
316 1sxj_C Activator 1 40 kDa subu 91.7 0.057 2E-06 54.7 1.9 21 1-21 52-72 (340)
317 3pqc_A Probable GTP-binding pr 91.7 0.047 1.6E-06 49.6 1.2 19 1-19 29-47 (195)
318 2v54_A DTMP kinase, thymidylat 91.7 0.068 2.3E-06 49.4 2.3 19 1-19 10-28 (204)
319 1uf9_A TT1252 protein; P-loop, 91.7 0.049 1.7E-06 50.3 1.3 18 1-18 14-31 (203)
320 1r2q_A RAS-related protein RAB 91.7 0.057 2E-06 47.7 1.6 19 1-19 12-30 (170)
321 1e6c_A Shikimate kinase; phosp 91.6 0.07 2.4E-06 47.9 2.2 19 1-19 8-26 (173)
322 3clv_A RAB5 protein, putative; 91.6 0.058 2E-06 49.1 1.7 19 1-19 13-31 (208)
323 1jal_A YCHF protein; nucleotid 91.6 0.078 2.7E-06 54.7 2.8 19 1-19 8-26 (363)
324 2hxs_A RAB-26, RAS-related pro 91.6 0.066 2.2E-06 47.9 2.0 19 1-19 12-30 (178)
325 1upt_A ARL1, ADP-ribosylation 91.6 0.059 2E-06 47.8 1.6 19 1-19 13-31 (171)
326 3dl0_A Adenylate kinase; phosp 91.5 0.062 2.1E-06 50.5 1.8 19 1-19 6-24 (216)
327 3reg_A RHO-like small GTPase; 91.5 0.12 4.2E-06 47.1 3.8 19 1-19 29-47 (194)
328 3c5c_A RAS-like protein 12; GD 91.5 0.15 5.2E-06 46.5 4.4 19 1-19 27-45 (187)
329 2q3h_A RAS homolog gene family 91.5 0.14 4.9E-06 46.9 4.2 19 1-19 26-44 (201)
330 2atv_A RERG, RAS-like estrogen 91.5 0.16 5.5E-06 46.5 4.6 19 1-19 34-52 (196)
331 3t1o_A Gliding protein MGLA; G 91.4 0.069 2.4E-06 48.5 2.0 21 1-21 20-40 (198)
332 2cxx_A Probable GTP-binding pr 91.4 0.053 1.8E-06 49.1 1.2 19 1-19 7-25 (190)
333 2ew1_A RAS-related protein RAB 91.4 0.11 3.8E-06 48.4 3.4 19 1-19 32-50 (201)
334 1r8s_A ADP-ribosylation factor 91.4 0.064 2.2E-06 47.3 1.6 18 1-18 6-23 (164)
335 3bc1_A RAS-related protein RAB 91.3 0.064 2.2E-06 48.5 1.6 19 1-19 17-35 (195)
336 3kkq_A RAS-related protein M-R 91.3 0.18 6.2E-06 45.3 4.7 19 1-19 24-42 (183)
337 3ake_A Cytidylate kinase; CMP 91.3 0.072 2.5E-06 49.4 2.0 19 1-19 8-26 (208)
338 1j8m_F SRP54, signal recogniti 91.3 0.026 8.7E-07 56.7 -1.3 32 1-37 104-135 (297)
339 2oil_A CATX-8, RAS-related pro 91.2 0.065 2.2E-06 49.0 1.6 19 1-19 31-49 (193)
340 1z0f_A RAB14, member RAS oncog 91.2 0.068 2.3E-06 47.7 1.6 19 1-19 21-39 (179)
341 2c95_A Adenylate kinase 1; tra 91.2 0.062 2.1E-06 49.3 1.4 19 1-19 15-33 (196)
342 2pt5_A Shikimate kinase, SK; a 91.2 0.083 2.8E-06 47.3 2.2 19 1-19 6-24 (168)
343 2g6b_A RAS-related protein RAB 91.1 0.069 2.4E-06 47.9 1.6 20 1-20 16-35 (180)
344 1zak_A Adenylate kinase; ATP:A 91.1 0.061 2.1E-06 50.8 1.3 19 1-19 11-29 (222)
345 2pbr_A DTMP kinase, thymidylat 91.1 0.083 2.8E-06 48.2 2.2 19 1-19 6-24 (195)
346 1nrj_B SR-beta, signal recogni 91.1 0.068 2.3E-06 49.9 1.6 19 1-19 18-36 (218)
347 1tev_A UMP-CMP kinase; ploop, 91.1 0.086 2.9E-06 48.1 2.2 18 1-18 9-26 (196)
348 2iwr_A Centaurin gamma 1; ANK 91.0 0.14 4.9E-06 45.8 3.7 19 1-19 13-31 (178)
349 2efe_B Small GTP-binding prote 91.0 0.074 2.5E-06 47.7 1.7 19 1-19 18-36 (181)
350 2bcg_Y Protein YP2, GTP-bindin 91.0 0.13 4.5E-06 47.5 3.4 19 1-19 14-32 (206)
351 2y8e_A RAB-protein 6, GH09086P 90.9 0.063 2.2E-06 47.9 1.1 19 1-19 20-38 (179)
352 1moz_A ARL1, ADP-ribosylation 90.9 0.044 1.5E-06 49.4 0.0 18 1-18 24-41 (183)
353 3t5d_A Septin-7; GTP-binding p 90.9 0.061 2.1E-06 52.8 1.1 19 1-19 14-32 (274)
354 2iyv_A Shikimate kinase, SK; t 90.8 0.082 2.8E-06 48.2 1.8 19 1-19 8-26 (184)
355 1ksh_A ARF-like protein 2; sma 90.8 0.08 2.7E-06 48.0 1.7 19 1-19 24-42 (186)
356 1q57_A DNA primase/helicase; d 90.7 2.1 7.2E-05 45.7 13.1 67 117-184 342-440 (503)
357 1wf3_A GTP-binding protein; GT 90.7 0.083 2.8E-06 52.9 1.9 19 1-19 13-31 (301)
358 2wwf_A Thymidilate kinase, put 90.7 0.081 2.8E-06 49.2 1.7 19 1-19 16-34 (212)
359 1zd8_A GTP:AMP phosphotransfer 90.7 0.073 2.5E-06 50.6 1.4 19 1-19 13-31 (227)
360 1vg8_A RAS-related protein RAB 90.6 0.084 2.9E-06 48.6 1.7 19 1-19 14-32 (207)
361 1jbk_A CLPB protein; beta barr 90.5 0.1 3.5E-06 46.8 2.2 19 1-19 49-67 (195)
362 3tkl_A RAS-related protein RAB 90.5 0.084 2.9E-06 48.1 1.6 19 1-19 22-40 (196)
363 2gf9_A RAS-related protein RAB 90.5 0.084 2.9E-06 48.1 1.6 19 1-19 28-46 (189)
364 2bme_A RAB4A, RAS-related prot 90.5 0.072 2.4E-06 48.1 1.1 20 1-20 16-35 (186)
365 1lw7_A Transcriptional regulat 90.5 0.16 5.6E-06 52.0 4.0 125 1-137 176-329 (365)
366 2fv8_A H6, RHO-related GTP-bin 90.5 0.17 6E-06 46.8 3.8 19 1-19 31-49 (207)
367 2vli_A Antibiotic resistance p 90.5 0.07 2.4E-06 48.4 1.0 19 1-19 11-29 (183)
368 2bwj_A Adenylate kinase 5; pho 90.4 0.091 3.1E-06 48.3 1.7 19 1-19 18-36 (199)
369 2cdn_A Adenylate kinase; phosp 90.4 0.096 3.3E-06 48.6 1.9 19 1-19 26-44 (201)
370 1aky_A Adenylate kinase; ATP:A 90.3 0.096 3.3E-06 49.4 1.9 19 1-19 10-28 (220)
371 1mh1_A RAC1; GTP-binding, GTPa 90.3 0.09 3.1E-06 47.3 1.6 19 1-19 11-29 (186)
372 2ga8_A Hypothetical 39.9 kDa p 90.3 0.088 3E-06 54.0 1.7 19 1-19 30-48 (359)
373 2gco_A H9, RHO-related GTP-bin 90.3 0.19 6.4E-06 46.4 3.9 19 1-19 31-49 (201)
374 1zbd_A Rabphilin-3A; G protein 90.3 0.099 3.4E-06 48.1 1.9 19 1-19 14-32 (203)
375 2j1l_A RHO-related GTP-binding 90.3 0.21 7.1E-06 46.7 4.2 19 1-19 40-58 (214)
376 2xb4_A Adenylate kinase; ATP-b 90.3 0.098 3.3E-06 49.7 1.9 19 1-19 6-24 (223)
377 2il1_A RAB12; G-protein, GDP, 90.2 0.09 3.1E-06 48.2 1.5 19 1-19 32-50 (192)
378 1z06_A RAS-related protein RAB 90.2 0.096 3.3E-06 47.7 1.7 19 1-19 26-44 (189)
379 2gf0_A GTP-binding protein DI- 90.2 0.081 2.8E-06 48.3 1.2 19 1-19 14-32 (199)
380 3a1s_A Iron(II) transport prot 90.1 0.1 3.5E-06 50.9 2.0 19 1-19 11-29 (258)
381 2xtp_A GTPase IMAP family memb 90.1 0.087 3E-06 51.0 1.4 19 1-19 28-46 (260)
382 1m7b_A RND3/RHOE small GTP-bin 90.1 0.081 2.8E-06 48.0 1.1 19 1-19 13-31 (184)
383 2g3y_A GTP-binding protein GEM 90.0 0.27 9.4E-06 46.3 4.8 18 1-18 43-60 (211)
384 1ukz_A Uridylate kinase; trans 90.0 0.12 4.1E-06 47.9 2.2 19 1-19 21-39 (203)
385 1nn5_A Similar to deoxythymidy 90.0 0.1 3.4E-06 48.6 1.7 19 1-19 15-33 (215)
386 2dby_A GTP-binding protein; GD 90.0 0.096 3.3E-06 54.1 1.6 19 1-19 7-25 (368)
387 3cmw_A Protein RECA, recombina 90.0 0.54 1.8E-05 57.5 8.3 72 116-187 797-902 (1706)
388 2a5j_A RAS-related protein RAB 89.9 0.099 3.4E-06 47.7 1.6 19 1-19 27-45 (191)
389 2fg5_A RAB-22B, RAS-related pr 89.9 0.087 3E-06 48.2 1.2 19 1-19 29-47 (192)
390 1qf9_A UMP/CMP kinase, protein 89.9 0.1 3.6E-06 47.4 1.7 19 1-19 12-30 (194)
391 3bwd_D RAC-like GTP-binding pr 89.9 0.1 3.5E-06 46.8 1.6 19 1-19 14-32 (182)
392 1jwy_B Dynamin A GTPase domain 89.8 0.096 3.3E-06 52.2 1.5 19 1-19 30-48 (315)
393 2qu8_A Putative nucleolar GTP- 89.8 0.1 3.6E-06 49.3 1.7 18 1-18 35-52 (228)
394 1e4v_A Adenylate kinase; trans 89.8 0.094 3.2E-06 49.3 1.3 19 1-19 6-24 (214)
395 2r62_A Cell division protease 89.8 0.11 3.9E-06 50.3 2.0 19 1-19 50-68 (268)
396 3i8s_A Ferrous iron transport 89.8 0.096 3.3E-06 51.6 1.4 19 1-19 9-27 (274)
397 2cjw_A GTP-binding protein GEM 89.8 0.11 3.6E-06 47.9 1.6 18 1-18 12-29 (192)
398 4dhe_A Probable GTP-binding pr 89.7 0.056 1.9E-06 50.6 -0.4 19 1-19 35-53 (223)
399 3oes_A GTPase rhebl1; small GT 89.7 0.092 3.1E-06 48.5 1.1 20 1-20 30-49 (201)
400 1x3s_A RAS-related protein RAB 89.7 0.11 3.8E-06 47.2 1.6 19 1-19 21-39 (195)
401 1zd9_A ADP-ribosylation factor 89.6 0.11 3.8E-06 47.4 1.6 19 1-19 28-46 (188)
402 4bas_A ADP-ribosylation factor 89.6 0.11 3.7E-06 47.4 1.6 19 1-19 23-41 (199)
403 1ltq_A Polynucleotide kinase; 89.6 0.12 4E-06 51.2 1.9 18 1-18 8-25 (301)
404 3tlx_A Adenylate kinase 2; str 89.6 0.12 4.1E-06 49.9 1.9 19 1-19 35-53 (243)
405 1zj6_A ADP-ribosylation factor 89.6 0.1 3.6E-06 47.4 1.4 18 1-18 22-39 (187)
406 3iev_A GTP-binding protein ERA 89.6 0.12 4E-06 51.9 1.9 19 1-19 16-34 (308)
407 2f7s_A C25KG, RAS-related prot 89.5 0.12 4.2E-06 48.1 1.9 19 1-19 31-49 (217)
408 2o52_A RAS-related protein RAB 89.5 0.11 3.6E-06 48.1 1.4 19 1-19 31-49 (200)
409 3a4m_A L-seryl-tRNA(SEC) kinas 89.5 0.14 4.7E-06 50.0 2.2 19 1-19 10-28 (260)
410 3cph_A RAS-related protein SEC 89.5 0.11 3.9E-06 47.9 1.6 19 1-19 26-44 (213)
411 3llu_A RAS-related GTP-binding 89.5 0.11 3.9E-06 47.7 1.6 20 1-20 26-45 (196)
412 2wsm_A Hydrogenase expression/ 89.4 0.099 3.4E-06 49.0 1.2 19 1-19 36-54 (221)
413 2p5s_A RAS and EF-hand domain 89.4 0.11 3.9E-06 47.7 1.6 19 1-19 34-52 (199)
414 3dz8_A RAS-related protein RAB 89.4 0.099 3.4E-06 47.7 1.1 19 1-19 29-47 (191)
415 2h57_A ADP-ribosylation factor 89.4 0.082 2.8E-06 48.2 0.6 19 1-19 27-45 (190)
416 2h17_A ADP-ribosylation factor 89.3 0.096 3.3E-06 47.4 0.9 19 1-19 27-45 (181)
417 1zuh_A Shikimate kinase; alpha 89.3 0.15 5.1E-06 45.7 2.2 19 1-19 13-31 (168)
418 2p65_A Hypothetical protein PF 89.1 0.12 4E-06 46.5 1.4 20 1-20 49-68 (187)
419 1g5t_A COB(I)alamin adenosyltr 89.1 0.27 9.2E-06 46.1 3.8 70 115-185 106-179 (196)
420 2fh5_B SR-beta, signal recogni 89.0 0.13 4.5E-06 47.8 1.6 19 1-19 13-31 (214)
421 1njg_A DNA polymerase III subu 88.9 0.16 5.4E-06 47.4 2.2 43 126-170 125-167 (250)
422 3cnl_A YLQF, putative uncharac 88.8 0.14 4.7E-06 50.3 1.7 20 1-20 105-124 (262)
423 2aka_B Dynamin-1; fusion prote 88.8 0.12 3.9E-06 51.0 1.2 19 1-19 32-50 (299)
424 4fcw_A Chaperone protein CLPB; 88.7 0.15 5.1E-06 50.5 1.9 33 122-155 113-146 (311)
425 3dm5_A SRP54, signal recogniti 88.7 2.5 8.7E-05 44.5 11.5 20 1-20 106-125 (443)
426 1h65_A Chloroplast outer envel 88.6 0.13 4.4E-06 50.3 1.4 19 1-19 45-63 (270)
427 2fu5_C RAS-related protein RAB 88.6 0.095 3.3E-06 47.2 0.4 19 1-19 14-32 (183)
428 3def_A T7I23.11 protein; chlor 88.5 0.14 4.7E-06 49.9 1.4 19 1-19 42-60 (262)
429 1gwn_A RHO-related GTP-binding 88.5 0.13 4.3E-06 48.1 1.1 19 1-19 34-52 (205)
430 1uj2_A Uridine-cytidine kinase 88.4 0.18 6.1E-06 48.7 2.2 19 1-19 28-46 (252)
431 2yc2_C IFT27, small RAB-relate 88.3 0.094 3.2E-06 48.2 0.2 18 1-18 26-43 (208)
432 3pxi_A Negative regulator of g 88.3 0.56 1.9E-05 53.0 6.5 19 1-19 527-545 (758)
433 3be4_A Adenylate kinase; malar 88.3 0.14 4.9E-06 48.2 1.4 19 1-19 11-29 (217)
434 2grj_A Dephospho-COA kinase; T 88.2 0.19 6.5E-06 46.8 2.2 18 1-18 18-35 (192)
435 1ak2_A Adenylate kinase isoenz 88.2 0.17 5.8E-06 48.2 1.9 19 1-19 22-40 (233)
436 2b6h_A ADP-ribosylation factor 88.1 0.13 4.5E-06 47.2 1.0 18 1-18 35-52 (192)
437 1a7j_A Phosphoribulokinase; tr 88.1 0.097 3.3E-06 52.2 0.1 18 2-19 12-29 (290)
438 3sr0_A Adenylate kinase; phosp 87.9 0.18 6.2E-06 47.6 1.8 19 1-19 6-24 (206)
439 1sxj_D Activator 1 41 kDa subu 87.8 0.18 6.3E-06 50.6 2.0 43 127-171 133-175 (353)
440 4djt_A GTP-binding nuclear pro 87.8 0.091 3.1E-06 49.0 -0.3 19 1-19 17-35 (218)
441 2atx_A Small GTP binding prote 87.6 0.16 5.3E-06 46.4 1.2 19 1-19 24-42 (194)
442 2chg_A Replication factor C sm 87.3 0.23 7.9E-06 45.7 2.2 41 127-169 102-142 (226)
443 2f6r_A COA synthase, bifunctio 87.3 0.19 6.6E-06 49.6 1.7 17 1-17 81-97 (281)
444 3cpj_B GTP-binding protein YPT 87.3 0.19 6.6E-06 47.2 1.6 19 1-19 19-37 (223)
445 4edh_A DTMP kinase, thymidylat 86.9 0.25 8.5E-06 46.8 2.2 20 2-21 13-32 (213)
446 3umf_A Adenylate kinase; rossm 86.9 0.23 7.7E-06 47.4 1.9 19 1-19 35-53 (217)
447 4gzl_A RAS-related C3 botulinu 86.9 0.48 1.6E-05 43.8 4.1 19 1-19 36-54 (204)
448 2x77_A ADP-ribosylation factor 86.8 0.13 4.3E-06 46.8 0.0 18 1-18 28-45 (189)
449 2hup_A RAS-related protein RAB 86.7 0.19 6.4E-06 46.5 1.2 19 1-19 35-53 (201)
450 3crm_A TRNA delta(2)-isopenten 86.6 0.23 7.9E-06 50.3 1.9 19 1-19 11-29 (323)
451 2hf9_A Probable hydrogenase ni 86.6 0.19 6.4E-06 47.2 1.1 19 1-19 44-62 (226)
452 2qmh_A HPR kinase/phosphorylas 86.6 0.24 8.1E-06 46.7 1.8 19 1-19 40-58 (205)
453 3q3j_B RHO-related GTP-binding 86.5 0.23 7.8E-06 46.5 1.6 19 1-19 33-51 (214)
454 3cmw_A Protein RECA, recombina 86.2 4.9 0.00017 49.3 13.3 69 119-187 451-553 (1706)
455 3cmu_A Protein RECA, recombina 86.2 1.1 3.7E-05 55.7 7.7 71 117-187 449-553 (2050)
456 3zvl_A Bifunctional polynucleo 86.1 0.23 7.9E-06 52.0 1.6 19 1-19 264-282 (416)
457 1d2n_A N-ethylmaleimide-sensit 86.0 0.29 9.9E-06 47.6 2.2 19 1-19 70-88 (272)
458 3a8t_A Adenylate isopentenyltr 86.0 0.38 1.3E-05 49.0 3.1 19 1-19 46-64 (339)
459 2ocp_A DGK, deoxyguanosine kin 86.0 0.26 8.8E-06 47.2 1.7 18 2-19 9-26 (241)
460 2j0v_A RAC-like GTP-binding pr 85.9 0.21 7.3E-06 46.2 1.1 19 1-19 15-33 (212)
461 3d3q_A TRNA delta(2)-isopenten 85.7 0.27 9.2E-06 50.1 1.8 19 1-19 13-31 (340)
462 3v9p_A DTMP kinase, thymidylat 85.7 0.24 8.3E-06 47.5 1.4 19 2-20 32-50 (227)
463 3th5_A RAS-related C3 botulinu 85.9 0.15 5.3E-06 47.0 0.0 18 1-18 36-53 (204)
464 3gee_A MNME, tRNA modification 85.6 0.31 1.1E-05 52.1 2.3 19 1-19 239-257 (476)
465 3t15_A Ribulose bisphosphate c 85.6 0.25 8.6E-06 49.0 1.5 18 2-19 43-60 (293)
466 2h92_A Cytidylate kinase; ross 85.5 0.29 1E-05 45.8 1.9 19 1-19 9-27 (219)
467 4b4t_M 26S protease regulatory 85.5 0.29 1E-05 51.6 2.0 68 123-196 270-354 (434)
468 4dcu_A GTP-binding protein ENG 85.5 0.23 8E-06 52.6 1.3 52 113-168 88-140 (456)
469 4b4t_K 26S protease regulatory 85.3 0.3 1E-05 51.4 2.0 46 125-170 263-322 (428)
470 1p5z_B DCK, deoxycytidine kina 85.2 0.21 7.3E-06 48.5 0.8 18 2-19 31-48 (263)
471 4b4t_J 26S protease regulatory 85.0 0.31 1.1E-05 50.8 1.9 66 125-196 239-321 (405)
472 3tqf_A HPR(Ser) kinase; transf 84.9 0.3 1E-05 45.0 1.5 18 1-18 22-39 (181)
473 3lv8_A DTMP kinase, thymidylat 84.9 0.3 1E-05 47.1 1.7 19 2-20 34-52 (236)
474 1ofh_A ATP-dependent HSL prote 84.9 0.36 1.2E-05 47.4 2.2 19 1-19 56-74 (310)
475 3eie_A Vacuolar protein sortin 84.8 0.32 1.1E-05 48.8 1.9 19 1-19 57-75 (322)
476 3exa_A TRNA delta(2)-isopenten 84.8 0.34 1.2E-05 48.9 2.0 19 1-19 9-27 (322)
477 1puj_A YLQF, conserved hypothe 84.8 0.29 9.8E-06 48.5 1.5 19 1-19 126-144 (282)
478 4b4t_L 26S protease subunit RP 84.7 0.33 1.1E-05 51.2 2.0 68 123-196 270-354 (437)
479 4tmk_A Protein (thymidylate ki 84.7 0.32 1.1E-05 46.1 1.7 20 2-21 10-29 (213)
480 3ld9_A DTMP kinase, thymidylat 84.4 0.39 1.3E-05 45.9 2.2 19 2-20 28-46 (223)
481 4hlc_A DTMP kinase, thymidylat 84.2 0.42 1.4E-05 45.0 2.2 19 2-20 9-27 (205)
482 3r7w_A Gtpase1, GTP-binding pr 84.0 0.44 1.5E-05 47.6 2.5 18 1-18 9-26 (307)
483 2x2e_A Dynamin-1; nitration, h 84.0 0.26 8.7E-06 50.3 0.7 19 1-19 37-55 (353)
484 3ice_A Transcription terminati 84.0 0.34 1.2E-05 50.4 1.6 19 1-19 180-198 (422)
485 1ko7_A HPR kinase/phosphatase; 84.0 0.3 1E-05 49.2 1.2 18 1-18 150-167 (314)
486 3foz_A TRNA delta(2)-isopenten 84.0 0.37 1.3E-05 48.5 1.9 19 1-19 16-34 (316)
487 3tmk_A Thymidylate kinase; pho 83.8 0.36 1.2E-05 45.9 1.7 19 2-20 12-30 (216)
488 3pvs_A Replication-associated 83.1 0.43 1.5E-05 50.5 2.0 19 1-19 56-74 (447)
489 3hjn_A DTMP kinase, thymidylat 83.0 0.49 1.7E-05 44.1 2.2 19 2-20 7-25 (197)
490 1ypw_A Transitional endoplasmi 82.9 0.41 1.4E-05 54.5 1.9 20 1-20 517-536 (806)
491 1wxq_A GTP-binding protein; st 82.8 0.38 1.3E-05 50.1 1.4 41 84-133 181-221 (397)
492 3pfi_A Holliday junction ATP-d 82.8 0.48 1.6E-05 47.5 2.2 19 1-19 61-79 (338)
493 3geh_A MNME, tRNA modification 82.7 0.35 1.2E-05 51.5 1.2 18 1-18 230-247 (462)
494 3ec1_A YQEH GTPase; atnos1, at 82.6 0.42 1.4E-05 49.2 1.7 18 1-18 168-185 (369)
495 3hws_A ATP-dependent CLP prote 82.5 0.51 1.7E-05 48.1 2.2 19 1-19 57-75 (363)
496 3l0i_B RAS-related protein RAB 82.4 0.1 3.6E-06 48.0 -2.7 19 1-19 39-57 (199)
497 4b4t_H 26S protease regulatory 82.4 0.47 1.6E-05 50.3 2.0 69 122-196 297-382 (467)
498 3gj0_A GTP-binding nuclear pro 82.3 0.29 9.9E-06 45.7 0.3 18 1-18 21-39 (221)
499 3p32_A Probable GTPase RV1496/ 82.3 0.44 1.5E-05 48.7 1.7 20 1-20 85-104 (355)
500 3gmt_A Adenylate kinase; ssgci 82.3 0.49 1.7E-05 45.5 1.9 19 1-19 14-32 (230)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.4e-42 Score=341.14 Aligned_cols=185 Identities=29% Similarity=0.406 Sum_probs=160.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCccc---------ceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA---------YKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~---------~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++.... +.+|||+|++.+++.+||+||+.++...+
T Consensus 37 iG~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLDKPT-----EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 6999999999999999999987 899999999875421 24999999999999999999999987654
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
.......++..+++.++++.+||.+.. .++++.+|||||||||+|||||+.+|++|+|||||+|||+.++.++++.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 187 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERF----ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGG----TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhh----hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 322345666778899999999996532 2456789999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|++++++ |+|||++||++. +...||++++|++|+++..+++++
T Consensus 188 l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 188 LKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhh
Confidence 9999865 999999999975 347899999999999999998876
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.3e-42 Score=361.35 Aligned_cols=182 Identities=25% Similarity=0.373 Sum_probs=163.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++++|||+|++.+++.+||+||+.++...+
T Consensus 60 iGpnGaGKSTLlr~i~GL~~p~-----~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~- 133 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLLERPT-----EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD- 133 (366)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-
T ss_pred EcCCCchHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc-
Confidence 6999999999999999999987 89999999998642 245999999999999999999999987654
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
..++++.+++++++++.+||.+.+ ++++.+|||||||||+|||||+.+|++|+|||||+|||+.++.+++++|
T Consensus 134 --~~~~~~~~~~v~~lL~~vgL~~~~-----~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 134 --NTPKDEVKRRVTELLSLVGLGDKH-----DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp --CCCHHHHHHHHHHHHHHHTCGGGT-----TCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 235677788999999999997654 4567899999999999999999999999999999999999999999999
Q ss_pred HHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++ .|.|||++||++ ..+..+||||++|++|++++.|++++
T Consensus 207 ~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 207 KDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99985 499999999996 47788899999999999999998765
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.9e-42 Score=359.13 Aligned_cols=182 Identities=30% Similarity=0.431 Sum_probs=164.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... .+.+|||+|+..+||.+||+||+.|+...+ ..+
T Consensus 35 lGpsGsGKSTLLr~iaGl~~p~-----~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~ 106 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGLETIT-----SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAK 106 (381)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCC
T ss_pred EcCCCchHHHHHHHHHcCCCCC-----CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCC
Confidence 6999999999999999999987 89999999987543 356999999999999999999999988764 245
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|+|||||+|||+..+.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~-----~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 107 KEVINQRVNQVAEVLQLAHLL-----DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp HHHHHHHHHHHHHHTTCGGGT-----TCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhh-----cCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 677788999999999996554 456789999999999999999999999999999999999999999999999975
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++||++ .++..++|||++|++|+++..|++++
T Consensus 182 ~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 182 RLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 4 99999999996 47888999999999999999998876
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.1e-42 Score=359.62 Aligned_cols=182 Identities=26% Similarity=0.425 Sum_probs=160.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeC----Cc---ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS----SN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~----~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~ 73 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++ .. .++++|||+|+..+||.+||+||+.|+...+
T Consensus 36 lGpsGsGKSTLLr~iaGl~~p~-----~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~-- 108 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGFEQPD-----SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG-- 108 (359)
T ss_dssp EESTTSSHHHHHHHHHTSSCCS-----EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS--
T ss_pred ECCCCchHHHHHHHHhcCCCCC-----CcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc--
Confidence 5999999999999999999988 89999999987 22 1356999999999999999999999976543
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
...+++.+++++++++.+||.+.+ ++++++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+
T Consensus 109 -~~~~~~~~~~v~~~l~~~gL~~~~-----~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 109 -KGRTAQERQRIEAMLELTGISELA-----GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp -SCCSHHHHHHHHHHHHHHTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 233456678899999999996655 45678999999999999999999999999999999999999999999888
Q ss_pred HHH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++. +.|.|+|++|||+ .++..++|||++|++|+++..|++++
T Consensus 183 ~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~e 225 (359)
T 3fvq_A 183 AALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHE 225 (359)
T ss_dssp HHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHH
Confidence 875 5699999999996 47888999999999999999998866
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.3e-41 Score=331.76 Aligned_cols=179 Identities=27% Similarity=0.368 Sum_probs=157.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------c-ceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------A-YKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~-~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... + ++++||+|++.+++.+||+||+.+....+
T Consensus 36 iG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLLDAPT-----EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp EECTTSCHHHHHHHHTTSSCCS-----EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 5999999999999999999987 89999999987542 1 35999999999999999999999976543
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
. ....+.+++++++++.+||.+..+ +++++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 111 ~---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 111 G---KPKKEAKERGEYLLSELGLGDKLS-----RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp T---CCHHHHHHHHHHHHHHTTCTTCTT-----CCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 1 234455678899999999976554 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCC
Q 008843 152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA 194 (551)
Q Consensus 152 L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 194 (551)
|++++++|+|||++||++. .+ ..||++++|++|++++.|+.
T Consensus 183 l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 183 FLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 9999877999999999965 45 78999999999999998864
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-41 Score=343.80 Aligned_cols=182 Identities=28% Similarity=0.426 Sum_probs=159.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-------cceEEEEccCC-CCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQED-LFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-------~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++++|||+|++ ..+..+||+||+.++....
T Consensus 40 iGpnGsGKSTLl~~l~Gl~~p~-----~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~- 113 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGILKPS-----SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM- 113 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS-
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-----CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc-
Confidence 6999999999999999999987 89999999988421 24599999986 3344789999999987643
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
..+.++.+++++++++.+||.+.+| +++.+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|
T Consensus 114 --~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 114 --KLPEDEIRKRVDNALKRTGIEHLKD-----KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 2456677788999999999976554 467789999999999999999999999999999999999999999999
Q ss_pred HHHH-hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ ++|+|||++||++. .+...||++++|++|++++.|++++
T Consensus 187 ~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 187 VEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9998 66999999999975 6778899999999999999998876
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-41 Score=341.51 Aligned_cols=182 Identities=29% Similarity=0.384 Sum_probs=159.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc------------------ccceEEEEccCCCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------------------KAYKFAYVRQEDLFFSQLTVRE 62 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~------------------~~~~i~yv~Q~~~l~~~lTV~e 62 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++.. .++++|||+|++.+++.+||+|
T Consensus 38 iG~nGsGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e 112 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFLEKPS-----EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 112 (262)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence 5999999999999999999987 8999999998751 1235999999999999999999
Q ss_pred HHHHHH-HcCCCCCCCHHHHHHHHHHHHHHcCCCcc-cCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCC
Q 008843 63 TLSLAA-ELQLPEILSVEERDEYVNSLLFKLGLVSC-ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGL 140 (551)
Q Consensus 63 ~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGL 140 (551)
|+.++. ..+ .....+.+++++++++.+||.+. ++ +++++|||||||||+||+||+.+|++|+|||||+||
T Consensus 113 ~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~L 184 (262)
T 1b0u_A 113 NVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG-----KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184 (262)
T ss_dssp HHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT-----SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred HHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 999864 332 12345556789999999999765 44 457789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 141 DAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 141 D~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|+.++..+.+.|++++++|+|||++||++. .+...||++++|++|++++.|++++
T Consensus 185 D~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (262)
T 1b0u_A 185 DPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQ 239 (262)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999878999999999964 6778899999999999999987654
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.4e-41 Score=339.01 Aligned_cols=182 Identities=28% Similarity=0.407 Sum_probs=159.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCC--cc-----cceEEEEccCCCCCCCCCHHHHHHHHH-HcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NK-----AYKFAYVRQEDLFFSQLTVRETLSLAA-ELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~--~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~-~l~~ 72 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++. .. ++++|||+|++.+++.+||+||+.++. ...
T Consensus 56 iG~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~- 129 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLLEDFD-----EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR- 129 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS-
T ss_pred EcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc-
Confidence 5999999999999999999987 899999999874 11 235999999999999999999999964 332
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
.....+.+++++++++.+||.+..| +++.+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|
T Consensus 130 --~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l 202 (263)
T 2olj_A 130 --KWPREKAEAKAMELLDKVGLKDKAH-----AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202 (263)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHCCCchHhc-----CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1234555678899999999976554 457789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++++|+|||++||++. .+...||++++|++|++++.|++++
T Consensus 203 ~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
T 2olj_A 203 KQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPED 245 (263)
T ss_dssp HHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999877999999999964 6778899999999999999988654
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.9e-41 Score=351.08 Aligned_cols=182 Identities=29% Similarity=0.421 Sum_probs=162.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++.+|||+|+..+|+.+||+||+.|+...+ ..+
T Consensus 47 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~ 118 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGLERPT-----KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVP 118 (355)
T ss_dssp ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCC
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCC
Confidence 5999999999999999999987 89999999987532 356999999999999999999999987653 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+++.+++++++++.+||.+.+| +++++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus 119 ~~~~~~~v~~~l~~~gL~~~~~-----r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 119 KDEMDARVRELLRFMRLESYAN-----RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 5666788999999999966554 56789999999999999999999999999999999999999999999999975
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++|||+ .++..++|++++|++|+++..|++++
T Consensus 194 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 232 (355)
T 1z47_A 194 EMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEE 232 (355)
T ss_dssp HHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 4 99999999996 47788899999999999999998765
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-41 Score=338.95 Aligned_cols=185 Identities=28% Similarity=0.380 Sum_probs=158.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHc-CCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAEL-QLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l-~~~ 73 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++.+|||+|++.+++.+||+||+.++... +..
T Consensus 39 iG~nGsGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 113 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFLKAD-----EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES 113 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence 5999999999999999999987 89999999987542 23599999999999999999999987543 111
Q ss_pred C---------CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHH
Q 008843 74 E---------ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQ 144 (551)
Q Consensus 74 ~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~ 144 (551)
. .....+.+++++++++.+||.+..+ +++++|||||||||+||++|+.+|++|+|||||+|||+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~ 188 (257)
T 1g6h_A 114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188 (257)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHH
T ss_pred cccccccccccCCHHHHHHHHHHHHHHcCCchhhC-----CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 0 0122344567899999999976554 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 145 AEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 145 ~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+..+++.|++++++|+|||++||++. .+...||++++|++|++++.|++++
T Consensus 189 ~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 189 AHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999888999999999975 6778899999999999999998765
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.6e-41 Score=351.42 Aligned_cols=182 Identities=28% Similarity=0.438 Sum_probs=162.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++.+|||+|+..+|+++||+||+.|+...+ ...
T Consensus 35 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~ 106 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGIYKPT-----SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAP 106 (362)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCC
T ss_pred ECCCCchHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999987653 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+++.+++++++++.+||.+..| +++++|||||||||+|||||+.+|++|+|||||+|||+..+.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 107 REEIDKKVREVAKMLHIDKLLN-----RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTT-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhh-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 5666788999999999976554 46779999999999999999999999999999999999999999999999975
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++|||+ .++..++|++++|++|+++..|++++
T Consensus 182 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 182 ELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 4 99999999996 47788899999999999999998766
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-41 Score=336.35 Aligned_cols=182 Identities=31% Similarity=0.446 Sum_probs=159.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++++|||+|++.+++.+||+||+.+..... ..
T Consensus 47 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~ 118 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTLIKPS-----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---AS 118 (256)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CC
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CC
Confidence 5999999999999999999987 89999999987542 245999999999999999999999876432 12
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
..++.+++++++++.+||.+..+ +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 119 ~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 119 SSSEIEEMVERATEIAGLGEKIK-----DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGGG-----SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCchHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 34445567899999999976554 4567899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++|+|||++||++. .+...||++++|++|++++.|++++
T Consensus 194 ~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 232 (256)
T 1vpl_A 194 QEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEE 232 (256)
T ss_dssp HTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred hCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHH
Confidence 78999999999964 6777899999999999999988655
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=6.6e-41 Score=351.12 Aligned_cols=182 Identities=29% Similarity=0.447 Sum_probs=162.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++.. .++++|||+|+..+|+++||+||+.|+...+
T Consensus 35 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGLEEPS-----RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred ECCCCcHHHHHHHHHHcCCCCC-----ccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 5999999999999999999987 8999999987643 2356999999999999999999999987653
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (551)
...+++.+++++++++.+||.+..+ +++++|||||||||+|||||+.+|++|+|||||+|||+..+.++.+.
T Consensus 110 ---~~~~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 181 (372)
T 1g29_1 110 ---KVPRQEIDQRVREVAELLGLTELLN-----RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181 (372)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTCGGGTT-----CCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHCCCchHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 2345666788999999999966554 56789999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 152 L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|+++.++ |.|+|++|||+ .++..++|++++|++|+++..|++++
T Consensus 182 l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 182 LKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999754 99999999996 47888999999999999999998766
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-41 Score=351.46 Aligned_cols=182 Identities=29% Similarity=0.404 Sum_probs=160.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++++|||+|+..+|+++||+||+.|+...+ ...
T Consensus 35 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~ 106 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGIYKPT-----SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RIS 106 (359)
T ss_dssp ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSH
T ss_pred EcCCCchHHHHHHHHHCCCCCC-----ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999976432 223
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+++.+++++++++.+||.+..| +++++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 107 KDEVEKRVVEIARKLLIDNLLD-----RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp HHHTTHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 4455678999999999966554 56789999999999999999999999999999999999999999999999975
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++|||+ .++..++|++++|++|+++..|++++
T Consensus 182 ~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 182 ELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4 99999999996 47788899999999999999998866
No 15
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-41 Score=334.23 Aligned_cols=180 Identities=26% Similarity=0.459 Sum_probs=156.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++.. .++++|||+|++.+++.+||+||+.++...+ .
T Consensus 30 iG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~ 99 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGIVKPD-----RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----E 99 (240)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----C
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----C
Confidence 5999999999999999999987 8999999998753 2346999999999999999999998864321 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
....+++++++++.+||.+..| +++++||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++++
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 100 RVERDRRVREMAEKLGIAHLLD-----RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHHHHHHHHHHHHTTTCTTTTT-----CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 1223567899999999976554 45678999999999999999999999999999999999999999999999975
Q ss_pred -CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 -~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+|+|||++||++. ++...||++++|++|++++.|++++
T Consensus 175 ~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 175 EFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 4999999999964 6778899999999999999997654
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.8e-41 Score=350.81 Aligned_cols=182 Identities=28% Similarity=0.431 Sum_probs=161.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc--------ccceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~--------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++.. .++++|||+|+..+|+.+||+||+.|+...+
T Consensus 37 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~- 110 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGLDVPS-----TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM- 110 (353)
T ss_dssp ECSCHHHHHHHHHHHHTSSCCS-----EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS-
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc-
Confidence 5999999999999999999987 8999999987633 2356999999999999999999999976543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (551)
...+++.+++++++++.+||.+..| +++++|||||||||+|||||+.+|++|+|||||+|||+..+.++.+.|
T Consensus 111 --~~~~~~~~~~v~~~l~~~~L~~~~~-----~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 183 (353)
T 1oxx_K 111 --KMSKEEIRKRVEEVAKILDIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183 (353)
T ss_dssp --SCCHHHHHHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 2345666788999999999976554 567799999999999999999999999999999999999999999999
Q ss_pred HHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++.+ .|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 184 ~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 227 (353)
T 1oxx_K 184 KEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPED 227 (353)
T ss_dssp HHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99975 499999999996 47888899999999999999998765
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-41 Score=332.96 Aligned_cols=181 Identities=27% Similarity=0.390 Sum_probs=156.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++++|||+|++.+++.+||+||+.++....
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--- 109 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGLVRAQ-----KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR--- 109 (240)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC---
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC---
Confidence 5999999999999999999987 89999999987542 134999999999999999999999864211
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
...++.+++++++++.++ |.+..+ +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+
T Consensus 110 -~~~~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 183 (240)
T 1ji0_A 110 -KDKEGIKRDLEWIFSLFPRLKERLK-----QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp -CCSSHHHHHHHHHHHHCHHHHTTTT-----SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHcccHhhHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 112344567888999995 865443 4577899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++++|+|||++||++. ++...||++++|++|++++.|++++
T Consensus 184 ~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 184 KINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99878999999999964 6778899999999999999887654
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.9e-41 Score=351.06 Aligned_cols=182 Identities=24% Similarity=0.364 Sum_probs=155.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++++|||+|+..+|+++||+||+.|+...+ ...
T Consensus 43 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~ 114 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGLEEPT-----EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFP 114 (372)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCC
T ss_pred ECCCCChHHHHHHHHHcCCCCC-----ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999975432 234
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+++.+++++++++.+||.+.++ +++++|||||||||+|||||+.+|++|+|||||+|||+..+.++.+.|+++.+
T Consensus 115 ~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 115 KDEIDKRVRWAAELLQIEELLN-----RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTT-----SCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 5666788999999999966554 56789999999999999999999999999999999999999999999999976
Q ss_pred C-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 ~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+ |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 190 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 190 KLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4 99999999996 47788899999999999999998866
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.5e-41 Score=348.03 Aligned_cols=179 Identities=27% Similarity=0.448 Sum_probs=158.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++++|||+|+..+|+.+||+||+.|+...+.. .
T Consensus 32 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~ 103 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGFHVPD-----SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---K 103 (348)
T ss_dssp ECCCTHHHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---C
T ss_pred ECCCCccHHHHHHHHHcCCCCC-----CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---C
Confidence 5999999999999999999987 89999999987542 34699999999999999999999998754311 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+. ++++++++.+||++..| +++++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus 104 ~~---~~v~~~l~~~~L~~~~~-----~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~ 175 (348)
T 3d31_A 104 DP---KRVLDTARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175 (348)
T ss_dssp CH---HHHHHHHHHTTCTTTTT-----SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 11 67899999999976554 46778999999999999999999999999999999999999999999999975
Q ss_pred -CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 158 -~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 176 ~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 176 KNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 599999999996 47788899999999999999998765
No 20
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.1e-40 Score=334.94 Aligned_cols=180 Identities=29% Similarity=0.464 Sum_probs=157.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++.++|++|++.+++.+||+||+.++....
T Consensus 43 iG~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---- 113 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYLSPS-----HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY---- 113 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSSCCS-----SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS----
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc----
Confidence 6999999999999999999987 89999999998653 235999999999888899999999876432
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhh------CCceEEEeCCCCCCCHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA------SPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~------~p~illLDEPtsGLD~~~~~~i~ 149 (551)
...+.+++++++++.+||.+..| +.+++|||||||||+|||||+. +|++|+|||||+|||+.++.+++
T Consensus 114 -~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~ 187 (266)
T 4g1u_C 114 -GGSQDRQALQQVMAQTDCLALAQ-----RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187 (266)
T ss_dssp -CSTTHHHHHHHHHHHTTCSTTTT-----SBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHcCChhHhc-----CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH
Confidence 12334567899999999976655 4567899999999999999999 99999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|++++++ |+|||++||++. .+...||++++|++|++++.|++++
T Consensus 188 ~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 188 RLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEE 234 (266)
T ss_dssp HHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999865 579999999964 6778899999999999999998765
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-40 Score=331.17 Aligned_cols=181 Identities=27% Similarity=0.368 Sum_probs=155.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--cceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++++|||+|++ ..++.+||+||+.++..... .
T Consensus 39 iG~nGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~ 109 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGLIEPT-----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----P 109 (266)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----T
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----C
Confidence 5999999999999999999987 89999999987532 35699999995 56677999999998653211 1
Q ss_pred HHHHHHHHHHHHHHcCCC--cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 78 VEERDEYVNSLLFKLGLV--SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
.++.+++++++++.+||. +..+ +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 110 DRDPVPLVKKAMEFVGLDFDSFKD-----RVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp TSCSHHHHHHHHHHTTCCHHHHTT-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCccccc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 223346688999999996 5554 456789999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++|+|||++||++. .+...||++++|++|++++.|++++
T Consensus 185 ~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 224 (266)
T 2yz2_A 185 KTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRME 224 (266)
T ss_dssp HHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHH
T ss_pred HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 877999999999975 5677899999999999999997655
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.1e-39 Score=324.99 Aligned_cols=184 Identities=25% Similarity=0.311 Sum_probs=148.9
Q ss_pred CCCCCCcHHHHHHHHHcC--cCCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQ--LMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~--~~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~ 72 (551)
+||||||||||+|+|+|+ .+|+ +|+|.++|+++... +..++||+|++.+++.+||+||+.+......
T Consensus 35 ~G~nGsGKSTLlk~l~Gl~~~~p~-----~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGDPEYTVE-----RGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL 109 (250)
T ss_dssp ECSTTSSHHHHHHHHHTCTTCEEE-----EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCC-----ceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence 599999999999999998 5565 89999999987542 1238999999999999999999988653110
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCC-CChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 73 PEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRG-ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~-LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.......+..++++++++.+||. +..| +++.. |||||||||+||++|+.+|++|+|||||+|||+.++..+++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~ 184 (250)
T 2d2e_A 110 GREVGVAEFWTKVKKALELLDWDESYLS-----RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184 (250)
T ss_dssp TSCCCHHHHHHHHHHHHHHHTCCGGGGG-----SBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCChhHhc-----CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 11122344456789999999993 4444 45667 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhh-cccEEEEcCCeEEEecCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPAR 195 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~iv~~G~~~ 195 (551)
.|++++++|+|||++||++. .+... +|++++|++|++++.|+++
T Consensus 185 ~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 185 GVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999777999999999975 55666 5999999999999988764
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-39 Score=329.52 Aligned_cols=185 Identities=28% Similarity=0.360 Sum_probs=152.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCC--cc-----cceEEEEccCCCC--CCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NK-----AYKFAYVRQEDLF--FSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~--~~-----~~~i~yv~Q~~~l--~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++. .. ++++|||+|++.+ .+.+||+||+.++....
T Consensus 53 iG~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~ 127 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYEPAT-----SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence 5999999999999999999987 899999998875 21 2459999999754 34579999998853211
Q ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 72 LP-EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 72 ~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.. .....++.+++++++++.+||.+..+ +++++|||||||||+|||||+.+|++|+|||||+|||+.++..+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~ 202 (279)
T 2ihy_A 128 IGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-----QYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202 (279)
T ss_dssp ------CCHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH
Confidence 00 00112334567899999999976554 4567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEE--EEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTV--ICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tv--i~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.|++++++|+|| |++||++. ++...||++++|++|++++.|++++
T Consensus 203 ~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 249 (279)
T 2ihy_A 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVED 249 (279)
T ss_dssp HHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999998779999 99999974 6677899999999999999987654
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=9.4e-39 Score=321.28 Aligned_cols=185 Identities=25% Similarity=0.306 Sum_probs=154.0
Q ss_pred CCCCCCcHHHHHHHHHcCc--CCCCCcceeeEEEECCEeCCcc------cceEEEEccCCCCCCCCCHHHHHHHHHH-cC
Q 008843 1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAE-LQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~--~~~~~~~~~G~i~i~g~~~~~~------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~-l~ 71 (551)
+||||||||||+|+|+|+. +|+ +|+|.++|+++... +..++||+|++.+++.+||.|++.+... .+
T Consensus 52 ~G~NGsGKSTLlk~l~Gl~~~~p~-----~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~ 126 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGREDYEVT-----GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 126 (267)
T ss_dssp ECCTTSSHHHHHHHHHTCTTCEEE-----EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCC-----CeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence 5999999999999999984 444 89999999987532 1239999999999999999999987542 11
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCC-CCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHH
Q 008843 72 ---LPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVR-GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (551)
Q Consensus 72 ---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~-~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~ 146 (551)
.....+.++.+++++++++.+||. +.. ++++. +|||||||||+||+||+.+|++|+|||||+|||+.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~ 201 (267)
T 2zu0_C 127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLL-----TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 201 (267)
T ss_dssp HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT-----TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHH
T ss_pred hhhccccCCHHHHHHHHHHHHHHcCCChhHh-----cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 111223445567889999999995 333 34555 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchhHHhh-cccEEEEcCCeEEEecCCCC
Q 008843 147 KVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 147 ~i~~~L~~la~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+++.|++++++|+|||++||++. .+... +|++++|++|++++.|++++
T Consensus 202 ~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 251 (267)
T 2zu0_C 202 VVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTL 251 (267)
T ss_dssp HHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTH
T ss_pred HHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHH
Confidence 999999999877999999999975 45554 89999999999999999875
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9e-39 Score=317.99 Aligned_cols=176 Identities=27% Similarity=0.375 Sum_probs=152.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||||+|+|+.+| . |+|.++|+++... ++++|||+|++.+++.+||+||+.++.. ..
T Consensus 32 iG~NGsGKSTLlk~l~Gl~~p-----~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~- 101 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGMTSG-----K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK- 101 (249)
T ss_dssp ECCTTSSHHHHHHHHTTSSCC-----E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-
T ss_pred ECCCCCcHHHHHHHHhCCCCC-----C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-
Confidence 599999999999999999875 3 9999999987432 2459999999999999999999987521 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCc-------eEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS-------VIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~-------illLDEPtsGLD~~~~~~i 148 (551)
.. +++++++++.+||.+..+ +.+++||||||||++||++|+.+|+ +|+|||||+|||+.++..+
T Consensus 102 ~~----~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 102 TR----TELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp TC----HHHHHHHHHHTTCGGGTT-----SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred Cc----HHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 11 456889999999976554 4567899999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|++++++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 173 ~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 219 (249)
T 2qi9_C 173 DKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREE 219 (249)
T ss_dssp HHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999877999999999964 6778899999999999999887654
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.7e-38 Score=316.91 Aligned_cols=176 Identities=26% Similarity=0.322 Sum_probs=149.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC-CCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-EILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~-~~~~~~ 79 (551)
+||||||||||+|+|+|+.+|+ +|+|.+ ++++|||+|++.+++.+||+||+.++...... ......
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~--------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 103 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGIHRPI-----QGKIEV--------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKS 103 (253)
T ss_dssp ECCSSSSHHHHHHHHTTSSCCS-----EEEEEE--------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCH
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEE--------eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCH
Confidence 5999999999999999999987 899982 34699999999999999999999987532110 001123
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD- 158 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~- 158 (551)
+.+++++++++.+||.+..+ +.+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~ 178 (253)
T 2nq2_C 104 HDYQVAMQALDYLNLTHLAK-----REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178 (253)
T ss_dssp HHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCChHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34567899999999976554 456789999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|+|||++||++. .+...||++++|++|+ ++.|++++
T Consensus 179 g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 179 NMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp CCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHH
Confidence 999999999964 6778899999999999 98887654
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.1e-38 Score=317.14 Aligned_cols=178 Identities=25% Similarity=0.409 Sum_probs=148.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... ++++|||+|++.+++ .||+||+.++.. .
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~ 109 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFYIPE-----NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----G 109 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----T
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----C
Confidence 5999999999999999999987 89999999987642 235999999998887 599999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCcc------ccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSN------VGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.. +++++++++.+++.+..+.. ..++.+++|||||||||+|||+|+.+|++|+|||||+|||+.++..++
T Consensus 110 ~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~ 185 (247)
T 2ff7_A 110 MS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185 (247)
T ss_dssp CC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHH
T ss_pred CC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 12 23466777788876543321 123457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|++++ +|+|||++||++. .+. .||++++|++|++++.|++++
T Consensus 186 ~~l~~~~-~g~tviivtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~ 229 (247)
T 2ff7_A 186 RNMHKIC-KGRTVIIIAHRLS-TVK-NADRIIVMEKGKIVEQGKHKE 229 (247)
T ss_dssp HHHHHHH-TTSEEEEECSSGG-GGT-TSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHc-CCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHH
Confidence 9999995 5999999999976 444 499999999999999998655
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.8e-39 Score=324.01 Aligned_cols=179 Identities=25% Similarity=0.376 Sum_probs=147.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++... ++++|||+|++.+++ .||+||+.++....
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---- 120 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLYQPT-----GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---- 120 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----
Confidence 5999999999999999999987 89999999987542 235999999998887 59999998864211
Q ss_pred CCHHH-----HHHHHHHHHHHc--CCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEE-----RDEYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~-----~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
...++ ....++++++.+ ||.+.. ++++.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-----~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 121 PTMEEITAVAMESGAHDFISGFPQGYDTEV-----GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHSTTGGGSBC-----CGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHhhhcchhhhh-----cCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 11111 122346678887 675433 345778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.|+++++ +|+|||++||++. .+. .||++++|++|+++..|++++
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~-~~~-~~d~v~~l~~G~i~~~g~~~~ 242 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLS-LAE-RAHHILFLKEGSVCEQGTHLQ 242 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHH-HHT-TCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHH
Confidence 999999874 5899999999975 454 499999999999999988655
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.2e-38 Score=322.51 Aligned_cols=177 Identities=26% Similarity=0.423 Sum_probs=146.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+++|+ +|+|.++|+++... ++.+|||+|++.+|+ .||+||+.++...
T Consensus 86 vG~sGsGKSTLl~ll~gl~~p~-----~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~----- 154 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRFYDIS-----SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT----- 154 (306)
T ss_dssp ESSSCHHHHHHHHHHTTSSCCS-----EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----
T ss_pred ECCCCchHHHHHHHHHcCCCCC-----CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----
Confidence 5999999999999999999987 89999999998653 245999999999986 4999999986421
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
...+ .+++.++..++.+ ..++.++ +.+.+||||||||++|||||+.+|+||+|||||+|||+.++..+
T Consensus 155 ~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i 229 (306)
T 3nh6_A 155 AGND----EVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229 (306)
T ss_dssp CCHH----HHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHH
T ss_pred CCHH----HHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 1222 2344444444432 2345554 45779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++.+ ++|+|+++|+++ .+.. +|+|++|++|++++.|++++
T Consensus 230 ~~~l~~l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 230 QASLAKVCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp HHHHHHHHT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHcC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHH
Confidence 999999864 789999999975 4555 99999999999999998765
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-38 Score=308.94 Aligned_cols=170 Identities=22% Similarity=0.306 Sum_probs=143.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||||+|+|+.+|+ +|+|.++|+++...++.++||+|++.+++.+||+||+.+....+.. . .+
T Consensus 41 iG~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~ 111 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTYLKPL-----KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN 111 (214)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH
Confidence 5999999999999999999987 8999999998753345699999999999999999999987654311 1 12
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
+++++++++.+||.+. ++.+.+||||||||++||++|+.+|++++|||||+|||+.++..+++.|++++++|+
T Consensus 112 -~~~~~~~l~~~gl~~~------~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~ 184 (214)
T 1sgw_A 112 -KNEIMDALESVEVLDL------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184 (214)
T ss_dssp -HHHHHHHHHHTTCCCT------TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHcCCCcC------CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 4568889999999644 446778999999999999999999999999999999999999999999999987799
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
|||++||++. .+...+|+++++ +|++
T Consensus 185 tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 185 IVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp EEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred EEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999975 567777887754 4443
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-38 Score=316.03 Aligned_cols=179 Identities=26% Similarity=0.418 Sum_probs=150.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.++|+++... +++++||+|++.+++ .||+||+.++... .
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~ 103 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFYQPT-----AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----D 103 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----C
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----C
Confidence 5999999999999999999987 89999999987532 345999999998888 4999999875211 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccc------cCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNV------GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.. ++.++++++.+++.+..+... .++.+++|||||||||+|||+|+.+|++++|||||+|||+.++..++
T Consensus 104 ~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~ 179 (243)
T 1mv5_A 104 YT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179 (243)
T ss_dssp SC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHH
T ss_pred CC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 11 234678899999977655421 13457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|++++ +|+|||++||++. .+. .+|++++|++|+++..|++++
T Consensus 180 ~~l~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~ 223 (243)
T 1mv5_A 180 KALDSLM-KGRTTLVIAHRLS-TIV-DADKIYFIEKGQITGSGKHNE 223 (243)
T ss_dssp HHHHHHH-TTSEEEEECCSHH-HHH-HCSEEEEEETTEECCCSCHHH
T ss_pred HHHHHhc-CCCEEEEEeCChH-HHH-hCCEEEEEECCEEEEeCCHHH
Confidence 9999997 6999999999975 454 599999999999998877654
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.2e-38 Score=313.42 Aligned_cols=172 Identities=23% Similarity=0.317 Sum_probs=148.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc--ccceEE-EEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--KAYKFA-YVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~--~~~~i~-yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||||+|+|+. |+ +|+|.++|+++.. .+++++ ||+|++.+ .+||+||+.+..... ..
T Consensus 36 ~G~NGsGKSTLlk~l~Gl~-p~-----~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~- 103 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGLL-PY-----SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL- 103 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS-CC-----EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC-
T ss_pred ECCCCCCHHHHHHHHhCCC-CC-----CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch-
Confidence 5999999999999999999 87 8999999988642 234699 99999877 789999999876542 11
Q ss_pred HHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 78 VEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
.+++++++++.+||. +..+ +++++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 104 ---~~~~~~~~l~~~gl~~~~~~-----~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 104 ---DRDLFLEMLKALKLGEEILR-----RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp ---CHHHHHHHHHHTTCCGGGGG-----SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC
T ss_pred ---HHHHHHHHHHHcCCChhHhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc
Confidence 135688999999996 5544 4567899999999999999999999999999999999999999999999985
Q ss_pred hCCCEEEEEecCCchhHHhhcc-cEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFD-DIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D-~v~lL~~G~iv~~G~~~~ 196 (551)
+ |||++||++. .+...|| ++++|++|++++.|++++
T Consensus 176 ~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~ 212 (263)
T 2pjz_A 176 K---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSE 212 (263)
T ss_dssp S---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHH
T ss_pred C---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHH
Confidence 4 9999999974 5677899 999999999999998765
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.6e-37 Score=307.80 Aligned_cols=176 Identities=27% Similarity=0.383 Sum_probs=144.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.++ +|+|.++|+++... +++++||+|++.+++ .||+||+.++.. .
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~~~------~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~ 119 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRFYDA------EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----D 119 (260)
T ss_dssp ECSTTSSHHHHHHHHTTSSCC------EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----T
T ss_pred ECCCCCCHHHHHHHHhccCCC------CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----C
Confidence 599999999999999999863 69999999987532 245999999999886 599999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc-------cCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.. ++.+.+.++.+++.+. .|+.+ ++++..|||||||||+|||+|+.+|++|+|||||+|||+.++..+
T Consensus 120 ~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 194 (260)
T 2ghi_A 120 AT----DEEVIKATKSAQLYDFIEALPKKWDTIV-GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194 (260)
T ss_dssp CC----HHHHHHHHHHTTCHHHHHTSTTGGGCEE-SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHH
T ss_pred CC----HHHHHHHHHHhCCHHHHHhccccccccc-cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 11 2335566666666432 33333 345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.|+++++ |+|||+++|++. .+. .||++++|++|+++..|++++
T Consensus 195 ~~~l~~l~~-~~tviivtH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 239 (260)
T 2ghi_A 195 QKAVEDLRK-NRTLIIIAHRLS-TIS-SAESIILLNKGKIVEKGTHKD 239 (260)
T ss_dssp HHHHHHHTT-TSEEEEECSSGG-GST-TCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEEECCHHH
Confidence 999999965 899999999976 344 599999999999999987655
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9.7e-37 Score=299.88 Aligned_cols=168 Identities=23% Similarity=0.365 Sum_probs=136.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|+.+|+ +|+|.++| +++||+|++.+++. ||+||+.++.. ....
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g--------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~- 98 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGELEPS-----EGKIKHSG--------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY- 98 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEECS--------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH-
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-----ccEEEECC--------EEEEEecCCcccCC-CHHHHhhccCC------cChH-
Confidence 5999999999999999999987 89999998 48999999998886 99999987531 1111
Q ss_pred HHHHHHHHHHHcCCCccc-------CccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHH-H
Q 008843 81 RDEYVNSLLFKLGLVSCA-------DSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-L 152 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~-L 152 (551)
+.++.++.+++.+.. ++.+ ++.+.+||||||||++|||+|+.+|++++|||||+|||+.++..+++. +
T Consensus 99 ---~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 174 (229)
T 2pze_A 99 ---RYRSVIKACQLEEDISKFAEKDNIVL-GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174 (229)
T ss_dssp ---HHHHHHHHTTCHHHHTTSTTGGGSCB-CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCC
T ss_pred ---HHHHHHHHhCcHHHHHhCcccccccc-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHH
Confidence 223344444543222 2222 234689999999999999999999999999999999999999999997 4
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++. +|+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus 175 ~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~ 215 (229)
T 2pze_A 175 CKLM-ANKTRILVTSKME-HLK-KADKILILHEGSSYFYGTFSE 215 (229)
T ss_dssp CCCT-TTSEEEEECCCHH-HHH-HCSEEEEEETTEEEEEECHHH
T ss_pred HHhh-CCCEEEEEcCChH-HHH-hCCEEEEEECCEEEEECCHHH
Confidence 5654 4899999999975 454 499999999999999998655
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=299.92 Aligned_cols=171 Identities=25% Similarity=0.407 Sum_probs=134.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|+.+|+ +|+|.++| +++||+|++.+ +.+||+||+.++... ..+.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g--------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~ 96 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEMDKV-----EGHVAIKG--------SVAYVPQQAWI-QNDSLRENILFGCQL------EEPY 96 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCSEEE-----EEEEEECS--------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTH
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECC--------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHH
Confidence 5999999999999999999886 89999998 38999999865 578999999885321 1111
Q ss_pred HHHHHHH---HHHHcCCCcc-cCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH---
Q 008843 81 RDEYVNS---LLFKLGLVSC-ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR--- 153 (551)
Q Consensus 81 ~~~~v~~---~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~--- 153 (551)
.+.+.+ +.+.+++.+. .++.+ ++.+.+||||||||++|||+|+.+|++++|||||+|||+.++..+++.|+
T Consensus 97 -~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 174 (237)
T 2cbz_A 97 -YRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPK 174 (237)
T ss_dssp -HHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTT
T ss_pred -HHHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHH
Confidence 111111 2233333221 11222 35688999999999999999999999999999999999999999999995
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+++ +|+|||++||++.. + ..||++++|++|++++.|++++
T Consensus 175 ~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 214 (237)
T 2cbz_A 175 GML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQE 214 (237)
T ss_dssp STT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHH
T ss_pred hhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHH
Confidence 443 58999999999864 4 4699999999999999987654
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-37 Score=323.05 Aligned_cols=176 Identities=24% Similarity=0.331 Sum_probs=145.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||||+|+|+.+ + +|+|.++|+++... ++.+|||+|+..+|+ +||+||+.+.. .
T Consensus 53 lGpsGsGKSTLLr~iaGl~~-~-----~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~ 119 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRLLN-T-----EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------A 119 (390)
T ss_dssp EESTTSSHHHHHHHHHTCSE-E-----EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------C
T ss_pred ECCCCChHHHHHHHHhCCCC-C-----CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------c
Confidence 59999999999999999986 5 89999999987643 246999999999998 59999986321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccC------CcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGD------AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
. .+++++++++.++|.+..+..... ....+|||||||||+|||||+.+|++|||||||+|||+.++.++.
T Consensus 120 ~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~ 195 (390)
T 3gd7_A 120 H----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIR 195 (390)
T ss_dssp S----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHH
T ss_pred c----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 1 134577899999997655433211 122339999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.|+++. .+.|+|+++|++. ....+|||++|++|+++..|++++
T Consensus 196 ~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 196 RTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILE 239 (390)
T ss_dssp HHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHH
T ss_pred HHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 9999864 4799999999963 345699999999999999998866
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.7e-35 Score=329.41 Aligned_cols=180 Identities=29% Similarity=0.448 Sum_probs=152.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||+++.+. ++++|||+|++.+++. ||+||+.++.... ..
T Consensus 376 vG~sGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~ 447 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRLYDPA-----SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SS 447 (595)
T ss_dssp ECCTTSSSTHHHHHHTTSSCCS-----EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TT
T ss_pred ECCCCCCHHHHHHHHhcCcCCC-----CcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cc
Confidence 5999999999999999999987 89999999998653 2459999999999975 9999999864211 01
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+ +++++++++.+|+.+ ..|+.+|+ .+.+||||||||++|||||+++|++++|||||+|||+.++..+
T Consensus 448 ~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i 522 (595)
T 2yl4_A 448 VT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLV 522 (595)
T ss_dssp SC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHH
T ss_pred cC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHH
Confidence 12 344677778777643 34666654 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++.+ |+|+|+++|+++ .+. .||++++|++|++++.|++++
T Consensus 523 ~~~l~~~~~-~~tvi~itH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 567 (595)
T 2yl4_A 523 QEALDRLMD-GRTVLVIAHRLS-TIK-NANMVAVLDQGKITEYGKHEE 567 (595)
T ss_dssp HHHHHHHHT-TSEEEEECCCHH-HHH-HSSEEEEEETTEEEEEECSCC
T ss_pred HHHHHHHhc-CCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence 999999976 899999999975 454 599999999999999999887
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.4e-35 Score=327.45 Aligned_cols=178 Identities=24% Similarity=0.365 Sum_probs=150.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||+++.+. ++++|||+|++.+|+. ||+||+.++.. + .
T Consensus 375 vG~sGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~ 444 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRFYDID-----EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-E 444 (582)
T ss_dssp EECTTSSHHHHHHHHTTTTCCS-----EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-C
T ss_pred ECCCCCCHHHHHHHHhhccCCC-----CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-C
Confidence 5999999999999999999987 89999999998653 2459999999999985 99999998531 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------ccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+ +++++++++.+++.+ ..|+.+|+ .+.+||||||||++|||||+++|++++|||||||||+.++.++
T Consensus 445 ~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b60_A 445 YS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_dssp CC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 22 234666777777643 23566654 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++.+ |+|+|+++|+++ .+ ..||++++|++|++++.|++++
T Consensus 520 ~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b60_A 520 QAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSE 564 (582)
T ss_dssp HHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHH
Confidence 999999975 899999999986 34 4699999999999999998765
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.7e-35 Score=328.64 Aligned_cols=178 Identities=26% Similarity=0.436 Sum_probs=149.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|+ +|+|.+||+++.+. ++++|||+|++.+|+. ||+||+.++.. + .
T Consensus 375 vG~sGsGKSTll~~l~g~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~ 444 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFYDVD-----SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-E 444 (582)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-C
Confidence 5999999999999999999987 89999999987542 3469999999999985 99999998531 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc-------cCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+ +++++++++.+|+.+. .||.+|+ ...+||||||||++|||||+++|++++|||||+|||+.++..+
T Consensus 445 ~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b5x_A 445 YT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI 519 (582)
T ss_pred CC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 12 2346667777776532 3555654 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++.+ |+|+|+++|+++ .+ ..||++++|++|++++.|++++
T Consensus 520 ~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b5x_A 520 QAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHAD 564 (582)
T ss_pred HHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 999999865 899999999975 44 4699999999999999998765
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.7e-35 Score=325.64 Aligned_cols=177 Identities=29% Similarity=0.441 Sum_probs=147.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|+ +|+|.+||+++... ++++|||+|++.+|+. ||+||+.++.. .
T Consensus 373 vG~sGsGKSTll~~l~g~~~p~-----~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~ 441 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRFYDVT-----SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----T 441 (578)
T ss_dssp ECSTTSSHHHHHTTTTTSSCCS-----EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----S
T ss_pred ECCCCChHHHHHHHHhcCCCCC-----CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----C
Confidence 5999999999999999999987 89999999998653 2459999999999987 99999987631 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+++ .+.+.++..++. +..||.+|+ ...+||||||||++|||||+++|++++|||||||||+.++..+
T Consensus 442 ~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i 516 (578)
T 4a82_A 442 ATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516 (578)
T ss_dssp CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH
T ss_pred CCHH----HHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 2222 234444444432 234566653 5779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++. +++|+|+++|+++. + ..+|++++|++|++++.|++++
T Consensus 517 ~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 517 QEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp HHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence 99999985 47999999999863 4 4599999999999999999766
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-35 Score=329.85 Aligned_cols=177 Identities=28% Similarity=0.413 Sum_probs=145.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||+++.+. +++++||+|++.+|+. ||+||+.++.. .
T Consensus 375 vG~sGsGKSTll~~l~g~~~~~-----~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~ 443 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLIDPE-----RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----D 443 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSSCCS-----EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----S
T ss_pred ECCCCCCHHHHHHHHhCCccCC-----CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----C
Confidence 5999999999999999999987 89999999988653 2459999999999976 99999987532 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++. .+.++..++ .+..|+.++ +.+.+||||||||++|||||+++|++++||||||+||+.++.++
T Consensus 444 ~~~~~~----~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i 518 (587)
T 3qf4_A 444 ATDDEI----VEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518 (587)
T ss_dssp CCHHHH----HHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHH
T ss_pred CCHHHH----HHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 222222 222333322 223456665 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++. +|+|+|+++|+++ .+ ..+|+|++|++|++++.|++++
T Consensus 519 ~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 519 LDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp HHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999985 5899999999975 34 4799999999999999998876
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-35 Score=327.82 Aligned_cols=177 Identities=25% Similarity=0.381 Sum_probs=145.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+|+ +|+|.+||+++.+. ++++|||+|++.+|+. ||+||+.++.. .
T Consensus 387 vG~sGsGKSTll~~l~g~~~p~-----~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~ 455 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFYDVD-----RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNP-----G 455 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSSCCS-----EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----T
T ss_pred ECCCCCcHHHHHHHHhcCcCCC-----CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCC-----C
Confidence 5999999999999999999987 89999999998653 2459999999999975 99999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +++.++..++. +..|+.+| +...+||||||||++|||||+++|++|+||||||+||+.++..+
T Consensus 456 ~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~-~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i 530 (598)
T 3qf4_B 456 ATDEE----IKEAAKLTHSDHFIKHLPEGYETVLT-DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530 (598)
T ss_dssp CCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCH-HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHH
T ss_pred CCHHH----HHHHHHHhCCHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 12222 33344444332 23345554 34678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++. +|+|+|+++|+++ .+. .||+|++|++|++++.|++++
T Consensus 531 ~~~l~~~~-~~~t~i~itH~l~-~~~-~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 531 QAAMWKLM-EGKTSIIIAHRLN-TIK-NADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp HHHHHHHH-TTSEEEEESCCTT-HHH-HCSEEEEECSSSEEECSCHHH
T ss_pred HHHHHHHc-CCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence 99999986 5899999999986 454 499999999999999998765
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.7e-35 Score=296.18 Aligned_cols=167 Identities=24% Similarity=0.379 Sum_probs=133.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||||+|+|+.+|+ +|+|.++| +++||+|++.+++. ||+||+. +. . ...
T Consensus 70 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g--------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~-- 126 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGELEPS-----EGKIKHSG--------RISFCSQNSWIMPG-TIKENII-GV--S----YDE-- 126 (290)
T ss_dssp EESTTSSHHHHHHHHTTSSCEE-----EEEEECCS--------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH--
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECC--------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch--
Confidence 5999999999999999999886 89999998 48999999988885 9999997 32 1 111
Q ss_pred HHHHHHHHHHHcCCCccc-------CccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHH-
Q 008843 81 RDEYVNSLLFKLGLVSCA-------DSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL- 152 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L- 152 (551)
..+++.++.+++.+.. ++.++ ..+++||||||||++|||+|+.+|++++|||||+|||+.++..+++.+
T Consensus 127 --~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll 203 (290)
T 2bbs_A 127 --YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203 (290)
T ss_dssp --HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCC
T ss_pred --HHHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1233444555553221 22222 346799999999999999999999999999999999999999999974
Q ss_pred HHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 153 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++++ +|+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus 204 ~~~~-~~~tviivtHd~~-~~~-~~d~i~~l~~G~i~~~g~~~~ 244 (290)
T 2bbs_A 204 CKLM-ANKTRILVTSKME-HLK-KADKILILHEGSSYFYGTFSE 244 (290)
T ss_dssp CCCT-TTSEEEEECCCHH-HHH-HSSEEEEEETTEEEEEECHHH
T ss_pred HHhh-CCCEEEEEecCHH-HHH-cCCEEEEEECCeEEEeCCHHH
Confidence 5554 4899999999974 454 599999999999999998765
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.98 E-value=4.5e-33 Score=333.94 Aligned_cols=179 Identities=26% Similarity=0.446 Sum_probs=151.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|.|+++|. +|+|.+||.++.+. +++++|||||+.+|+. |++|||.|+.. |..
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~p~-----~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~ 1181 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYDTL-----GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSS 1181 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSCCS-----SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTT
T ss_pred ECCCCChHHHHHHHHhcCccCC-----CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCC
Confidence 5999999999999999999987 89999999998764 3569999999999997 99999987642 223
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.++++ +.+.++..++ .+..||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1182 ~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A 1182 VTMAQ----VEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256 (1321)
T ss_dssp SCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH
T ss_pred CCHHH----HHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH
Confidence 34443 4444444443 4556899986 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++. +|+|+|+++|.++ .+ ..||+|++|++|++++.|++++
T Consensus 1257 q~~l~~~~-~~~TvI~IAHRLs-Ti-~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1257 QEALDRAR-EGRTCIVIAHRLN-TV-MNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp HHHHTTTS-SSSEEEEECSSSS-TT-TTCSEEEEESSSSEEEEECHHH
T ss_pred HHHHHHHc-CCCEEEEeccCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99998865 4899999999975 34 4589999999999999999877
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=5.1e-32 Score=300.63 Aligned_cols=170 Identities=29% Similarity=0.375 Sum_probs=145.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||||+|+|+.+|+ +|+|.+ ..++||++|+....+.+||.|++....... ..
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~I~~--------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~ 447 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVEEPT-----EGKVEW--------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LN 447 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----BSCCCC--------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HH
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEE--------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CC
Confidence 5999999999999999999887 788865 246999999988778899999887641110 01
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g 159 (551)
..++++++++.+||.+.++ +.+++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++ ++|
T Consensus 448 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g 522 (607)
T 3bk7_A 448 SNFYKTELLKPLGIIDLYD-----RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522 (607)
T ss_dssp CHHHHHHTHHHHTCTTTTT-----SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 1356788999999976554 4567899999999999999999999999999999999999999999999997 469
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcC--CeEEEecCCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARD 196 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~ 196 (551)
.|||+++||+ ..+...+||+++|++ |+++..|++++
T Consensus 523 ~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 523 KTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 9999999996 477888999999986 88888999977
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=4.4e-32 Score=297.91 Aligned_cols=170 Identities=31% Similarity=0.389 Sum_probs=144.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|..+|+ +|+|.+ ..++|||+|+....+.+||.|++........ .
T Consensus 318 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~i~~--------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~ 377 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGVEEPT-----EGKIEW--------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------N 377 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----BCCCCC--------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------T
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEE--------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------C
Confidence 5999999999999999999887 788775 2369999999887788999998865411100 1
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g 159 (551)
..++++++++.+|+.+.. ++++..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++ +.|
T Consensus 378 ~~~~~~~~l~~~~l~~~~-----~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g 452 (538)
T 1yqt_A 378 SNFYKTELLKPLGIIDLY-----DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 452 (538)
T ss_dssp CHHHHHHTTTTTTCGGGT-----TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhhh-----cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 134678899999996544 44677899999999999999999999999999999999999999999999997 469
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcC--CeEEEecCCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARD 196 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~ 196 (551)
.|||+++||+ ..+...|||+++|++ |+++..|++++
T Consensus 453 ~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 453 KTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999996 578888999999986 78888999977
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=4e-32 Score=325.72 Aligned_cols=177 Identities=30% Similarity=0.417 Sum_probs=150.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|.|..+|. +|+|.+||.++.+. ++++|||+|++.+|+. |++||+.|+.. .
T Consensus 450 vG~sGsGKSTll~ll~~~~~~~-----~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~ 518 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRYYDVL-----KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----G 518 (1321)
T ss_dssp EECSSSCHHHHHHHHTTSSCCS-----EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----T
T ss_pred EecCCCcHHHHHHHhccccccc-----cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----c
Confidence 5999999999999999999987 99999999998764 2459999999999987 99999998732 2
Q ss_pred CCHHHHHHHHHHHHHHcC-------CCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLG-------LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+.++ +.++++..+ |.+-.||.+|+ ...+||||||||++||||+++||+|++||||||+||+.+...+
T Consensus 519 ~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i 593 (1321)
T 4f4c_A 519 ITREE----MVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593 (1321)
T ss_dssp CCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH
T ss_pred chHHH----HHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHH
Confidence 23333 333333333 34566899986 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++.+ |+|+|+++|+++ ....+|+|++|++|++++.|+.++
T Consensus 594 ~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 594 QQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHH
Confidence 999998764 899999999975 345689999999999999999766
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=3.8e-32 Score=325.21 Aligned_cols=179 Identities=27% Similarity=0.422 Sum_probs=147.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|..+|+ +|+|.+||.++... ++++|||+|++.+|+. ||+||+.++.. .
T Consensus 422 vG~sGsGKSTl~~ll~g~~~~~-----~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~ 490 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRLYDPL-----DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----D 490 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTSSCCS-----EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----S
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----C
Confidence 5999999999999999999987 89999999987653 2459999999999987 99999998742 1
Q ss_pred CCHHHHHHHH-----HHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHH
Q 008843 76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (551)
Q Consensus 76 ~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~ 150 (551)
.+.++..+.+ .+.++.+ .+..||.+|+ .+.+||||||||++|||||+.+|+||+||||||+||+.+...+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 491 VTMDEIEKAVKEANAYDFIMKL--PHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHS--TTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhc--cccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 2333332222 2233333 3345677764 577899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 151 ~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.++++. +|+|+|+++|+++ .+.. +|+|++|++|++++.|+.++
T Consensus 568 ~l~~~~-~~~t~i~itH~l~-~i~~-~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 568 ALDKAR-EGRTTIVIAHRLS-TVRN-ADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHH-TTSEEEEECSCHH-HHTT-CSEEEECSSSCCCCEECHHH
T ss_pred HHHHHc-CCCEEEEEecCHH-HHHc-CCEEEEEECCEEEEECCHHH
Confidence 998875 5899999999975 4544 99999999999999999766
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.4e-31 Score=293.47 Aligned_cols=172 Identities=23% Similarity=0.303 Sum_probs=143.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|+.+|+ +|+|.+++ ..++|++|+......+||.|++.+...... . .
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~-------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~--~ 361 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEITAD-----EGSVTPEK-------QILSYKPQRIFPNYDGTVQQYLENASKDAL----S--T 361 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----BCCEESSC-------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT----C--T
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECC-------eeeEeechhcccccCCCHHHHHHHhhhhcc----c--h
Confidence 5999999999999999999987 89998754 358999999777778899999987422111 0 1
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g 159 (551)
....++++++.+||.+..| +.+..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|
T Consensus 362 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g 436 (538)
T 3ozx_A 362 SSWFFEEVTKRLNLHRLLE-----SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK 436 (538)
T ss_dssp TSHHHHHTTTTTTGGGCTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCHHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 1245788899999965544 46778999999999999999999999999999999999999999999999985 58
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcC--CeEEEecCCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARD 196 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~ 196 (551)
.|||+++||+ .++..+||||++|++ |.....+++.+
T Consensus 437 ~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~ 474 (538)
T 3ozx_A 437 AVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVT 474 (538)
T ss_dssp CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHH
Confidence 9999999996 478888999999986 55666666654
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=5.8e-32 Score=323.61 Aligned_cols=179 Identities=28% Similarity=0.433 Sum_probs=147.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+++|+|+.+|+ +|+|.+||+++... +++++||||++.+|+ .||+||+.++...+ .
T Consensus 1065 vG~sGsGKSTl~~~l~g~~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~ 1135 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERFYDPM-----AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---V 1135 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTSSCCS-----EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---C
T ss_pred ECCCCCCHHHHHHHHhcCcCCC-----CCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---C
Confidence 5999999999999999999987 89999999988653 346999999998886 59999998753211 1
Q ss_pred CCHHHHHHHHHHHHHHcC-------CCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLG-------LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.+.++.. +.++..+ +.+..||.+|+ ...+||||||||++|||+|+++|++|+|||||+|||+.+...+
T Consensus 1136 ~~~~~i~----~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1136 VSYEEIV----RAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CCHHHHH----HHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCHHHHH----HHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2333332 2223222 34456788875 5778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.|+++ .+|+|+|+++|+++ .+ ..||||++|++|++++.|++++
T Consensus 1211 ~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1211 QEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQ 1255 (1284)
T ss_dssp HHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHH
T ss_pred HHHHHHh-CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 9999885 45899999999986 45 4499999999999999998765
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-31 Score=292.34 Aligned_cols=171 Identities=22% Similarity=0.255 Sum_probs=142.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|+.+|+ +|+. . ....++|++|+.......||+|++.... +. ...
T Consensus 384 iG~NGsGKSTLlk~l~Gl~~p~-----~G~~------~--~~~~i~~~~q~~~~~~~~tv~e~~~~~~--~~--~~~--- 443 (608)
T 3j16_B 384 MGENGTGKTTLIKLLAGALKPD-----EGQD------I--PKLNVSMKPQKIAPKFPGTVRQLFFKKI--RG--QFL--- 443 (608)
T ss_dssp ESCTTSSHHHHHHHHHTSSCCS-----BCCC------C--CSCCEEEECSSCCCCCCSBHHHHHHHHC--SS--TTT---
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CCcC------c--cCCcEEEecccccccCCccHHHHHHHHh--hc--ccc---
Confidence 5999999999999999999987 5641 1 1346999999977666679999875432 11 111
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g 159 (551)
..+.++++++.+||.+.+| +.+.+|||||||||+||++|+.+|++|+|||||+|||+.++.+++++|++++ +.|
T Consensus 444 ~~~~~~~~l~~l~l~~~~~-----~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g 518 (608)
T 3j16_B 444 NPQFQTDVVKPLRIDDIID-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK 518 (608)
T ss_dssp SHHHHHHTHHHHTSTTTSS-----SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 1245678999999976554 4677899999999999999999999999999999999999999999999986 569
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcC--CeEEEecCCCCc
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARDE 197 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~ 197 (551)
.|||++|||+ .++..++||+++|++ |+++..|++++.
T Consensus 519 ~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 519 KTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp CEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 9999999996 478888999999986 999999999874
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1.2e-30 Score=289.77 Aligned_cols=164 Identities=27% Similarity=0.370 Sum_probs=131.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEE---------EECCEeCCc-------ccceEEEEccCCCCCC---CCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL---------EVNGKPSSN-------KAYKFAYVRQEDLFFS---QLTVR 61 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i---------~i~g~~~~~-------~~~~i~yv~Q~~~l~~---~lTV~ 61 (551)
+||||||||||||+|+|.++|+ +|++ .++|.++.. ....+++++|.....+ ..||.
T Consensus 123 iG~NGsGKSTLlkiL~Gll~p~-----~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~ 197 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQLIPN-----LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 197 (607)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCC-----TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred ECCCCChHHHHHHHHhCCCCCC-----CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence 6999999999999999999887 4554 345654321 1234789998743322 13999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCC
Q 008843 62 ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD 141 (551)
Q Consensus 62 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD 141 (551)
|++... . ..++++++++.+||.+..| +.+++|||||||||+||++|+.+|++|+|||||+|||
T Consensus 198 e~l~~~------~------~~~~~~~~L~~lgL~~~~~-----~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD 260 (607)
T 3bk7_A 198 ELLKKV------D------EVGKFEEVVKELELENVLD-----RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260 (607)
T ss_dssp HHHHHT------C------CSSCHHHHHHHTTCTTGGG-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCC
T ss_pred HHhhhh------H------HHHHHHHHHHHcCCCchhC-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 998631 0 0134778999999976554 4567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 142 AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 142 ~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
+.++.++++.|++++++|.|||+++|++. .+...+|++++|+++.
T Consensus 261 ~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 261 IRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 99999999999999888999999999964 6778899999998653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.9e-30 Score=284.91 Aligned_cols=164 Identities=25% Similarity=0.352 Sum_probs=132.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEE---------EECCEeCCc-------ccceEEEEccCCCCCCC---CCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL---------EVNGKPSSN-------KAYKFAYVRQEDLFFSQ---LTVR 61 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i---------~i~g~~~~~-------~~~~i~yv~Q~~~l~~~---lTV~ 61 (551)
+||||||||||+|+|+|..+|+ +|++ .++|.++.. ....+++++|+...++. .|+.
T Consensus 53 vG~NGaGKSTLlk~l~Gl~~p~-----~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~ 127 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQLIPN-----LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI 127 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCC-----TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence 6999999999999999999887 4553 345654321 12347899997544332 3899
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCC
Q 008843 62 ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD 141 (551)
Q Consensus 62 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD 141 (551)
|++.... ..++++++++.+||.+..| +++++|||||||||+||++|+.+|++|+|||||++||
T Consensus 128 e~~~~~~------------~~~~~~~~l~~lgl~~~~~-----~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD 190 (538)
T 1yqt_A 128 ELLKKAD------------ETGKLEEVVKALELENVLE-----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190 (538)
T ss_dssp HHHHHHC------------SSSCHHHHHHHTTCTTTTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred HHHhhhh------------HHHHHHHHHHHcCCChhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 8875310 1234778999999965544 4567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 142 AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 142 ~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
+.++..+++.|++++++|.|||+++|+. ..+...||++++|++|.
T Consensus 191 ~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 191 IRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 9999999999999988899999999996 47888899999998653
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=7.5e-30 Score=287.78 Aligned_cols=189 Identities=24% Similarity=0.330 Sum_probs=120.6
Q ss_pred CCCCCCcHHHHH---------------------HHHHcCcCCCCCc--ceeeEEEECCEeCCcc-cceEEEEccCCC---
Q 008843 1 MGPSGSGKTTLL---------------------NVLAGQLMASPRL--HLSGLLEVNGKPSSNK-AYKFAYVRQEDL--- 53 (551)
Q Consensus 1 lGpsGaGKSTLL---------------------~~L~g~~~~~~~~--~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~--- 53 (551)
+||||||||||+ +++.|+..|+.+. ...|.|.++|.+.... ...+|+|+|...
T Consensus 50 iGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~ 129 (670)
T 3ux8_A 50 TGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLR 129 (670)
T ss_dssp ECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTCC----
T ss_pred ECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeechhhhHH
Confidence 699999999998 8888887765211 1246777887665432 233556655433
Q ss_pred ----------------CCCCCCHHHHHHHHHHcCCCCCCCH------HHHHHHHHHHHHHcCCCcccCccccCCcCCCCC
Q 008843 54 ----------------FFSQLTVRETLSLAAELQLPEILSV------EERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111 (551)
Q Consensus 54 ----------------l~~~lTV~e~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 111 (551)
.++.+||.||+.+............ ++..++ .++++.+||.+. ..++++.+||
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gL~~~----~~~~~~~~LS 204 (670)
T 3ux8_A 130 LLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQNVGLDYL----TLSRSAGTLS 204 (670)
T ss_dssp ---------------------CC--------------------------CHHH-HHHHHHTTCTTC----CTTCBGGGSC
T ss_pred HHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHHcCCchh----hhcCCcccCC
Confidence 2467899999987543221110000 011111 245888999643 1245677899
Q ss_pred hHHhHHHHHHHHHhhCCc--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------
Q 008843 112 GGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------ 183 (551)
Q Consensus 112 GGerqRvsIa~~L~~~p~--illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------ 183 (551)
|||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|++++++|.|||+++||+. .+ ..||++++|
T Consensus 205 GGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~ii~l~~g~~~ 282 (670)
T 3ux8_A 205 GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGI 282 (670)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH-HH-HHCSEEEEECSSSGG
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH-hhCCEEEEecccccc
Confidence 999999999999999998 99999999999999999999999999988999999999975 44 459999999
Q ss_pred cCCeEEEecCCCC
Q 008843 184 TEGKLVYAGPARD 196 (551)
Q Consensus 184 ~~G~iv~~G~~~~ 196 (551)
++|++++.|++++
T Consensus 283 ~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 283 HGGEVVAAGTPEE 295 (670)
T ss_dssp GCCSEEEEECHHH
T ss_pred cCCEEEEecCHHH
Confidence 8999999998765
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=2.5e-29 Score=275.62 Aligned_cols=165 Identities=27% Similarity=0.327 Sum_probs=129.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEE-----------EECCEeCCc-------ccceEEEEccC----CCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL-----------EVNGKPSSN-------KAYKFAYVRQE----DLFFSQL 58 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i-----------~i~g~~~~~-------~~~~i~yv~Q~----~~l~~~l 58 (551)
+||||||||||||+|+|.++|+ +|+| .++|+++.. ....+....|. +.++. .
T Consensus 31 iGpNGaGKSTLlkiL~Gl~~p~-----~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 104 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGEIIPN-----FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK-G 104 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCC-----TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC-S
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc-C
Confidence 6999999999999999999987 5776 566665421 11224444443 33333 3
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC
Q 008843 59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138 (551)
Q Consensus 59 TV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPts 138 (551)
||+|++.... .+++++++++.+|+.+..| +.+++|||||||||+||+||+.+|++|+|||||+
T Consensus 105 ~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts 167 (538)
T 3ozx_A 105 TVNEILTKID------------ERGKKDEVKELLNMTNLWN-----KDANILSGGGLQRLLVAASLLREADVYIFDQPSS 167 (538)
T ss_dssp BHHHHHHHHC------------CSSCHHHHHHHTTCGGGTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred cHHHHhhcch------------hHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 7887654210 1234678899999976554 4567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEE
Q 008843 139 GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (551)
Q Consensus 139 GLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 190 (551)
|||+.++..+.+.|+++++ |+|||+++|+. ..+...+|++++|++|..++
T Consensus 168 ~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp TCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 9999999999999999976 99999999996 57888999999998765443
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=2.3e-28 Score=275.72 Aligned_cols=125 Identities=28% Similarity=0.423 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC---ceEEE
Q 008843 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYA 133 (551)
Q Consensus 57 ~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p---~illL 133 (551)
.+||.||+.+.... ...+++.+.++.+||.+. ..++++.+|||||||||+|||+|+.+| ++|+|
T Consensus 504 ~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~----~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llll 570 (670)
T 3ux8_A 504 DMTVEDALDFFASI---------PKIKRKLETLYDVGLGYM----KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 570 (670)
T ss_dssp TSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTS----BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEE
T ss_pred hCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchh----hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 47999999875321 122445678889998531 224567899999999999999999887 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
||||+|||+.++.+++++|++++++|+|||+++|++. .+ ..||++++| ++|++++.|++++
T Consensus 571 DEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~ 637 (670)
T 3ux8_A 571 DEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEE 637 (670)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence 9999999999999999999999988999999999975 44 569999999 8999999999876
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=2.2e-28 Score=280.88 Aligned_cols=163 Identities=25% Similarity=0.354 Sum_probs=133.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||||+|+| |+| +|.+... ..+++|++|+. .+++.+||.|++.+ .. .. .
T Consensus 467 iGpNGsGKSTLLk~Lag-----------G~i--~g~~~~~-~~~~~~v~q~~~~~~~~ltv~e~l~~--~~--~~-~--- 524 (986)
T 2iw3_A 467 CGPNGCGKSTLMRAIAN-----------GQV--DGFPTQE-ECRTVYVEHDIDGTHSDTSVLDFVFE--SG--VG-T--- 524 (986)
T ss_dssp ECSTTSSHHHHHHHHHH-----------TCS--TTCCCTT-TSCEEETTCCCCCCCTTSBHHHHHHT--TC--SS-C---
T ss_pred ECCCCCCHHHHHHHHhC-----------CCc--CCCcccc-ceeEEEEcccccccccCCcHHHHHHH--hh--cC-H---
Confidence 59999999999999995 111 3333221 23478999984 77889999999975 11 11 1
Q ss_pred HHHHHHHHHHHHcCCC-cccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 80 ERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
+++++++++.+||. +.. ++++++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++ .
T Consensus 525 --~~~v~~~L~~lgL~~~~~-----~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~ 594 (986)
T 2iw3_A 525 --KEAIKDKLIEFGFTDEMI-----AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---C 594 (986)
T ss_dssp --HHHHHHHHHHTTCCHHHH-----HSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---S
T ss_pred --HHHHHHHHHHcCCChhhh-----cCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---C
Confidence 45688999999994 333 345678999999999999999999999999999999999999999999998 5
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcCCeEE-EecCCCC
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD 196 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 196 (551)
|.|||+++|++ ..+...||++++|++|+++ +.|++++
T Consensus 595 g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e 632 (986)
T 2iw3_A 595 GITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTE 632 (986)
T ss_dssp CSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHH
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHH
Confidence 89999999995 5778889999999999997 6787654
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=1.7e-28 Score=281.83 Aligned_cols=175 Identities=27% Similarity=0.400 Sum_probs=133.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCC----CCCCCHHHHHHHHHHcC-----
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLF----FSQLTVRETLSLAAELQ----- 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l----~~~lTV~e~l~~~~~l~----- 71 (551)
+||||||||||+|+|+|..+|+ +|+|.++|. .+++|++|+... ....|++|++.+.....
T Consensus 705 iGpNGSGKSTLLklLaGll~P~-----sG~I~~~~~------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~ 773 (986)
T 2iw3_A 705 IGPNGAGKSTLINVLTGELLPT-----SGEVYTHEN------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRET 773 (986)
T ss_dssp CSCCCHHHHHHHHHHTTSSCCS-----EEEEEECTT------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTT
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEEcCc------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhh
Confidence 6999999999999999999987 899999863 258999997521 23468888876532100
Q ss_pred -------CC----------------------------------------------------CCCC---------------
Q 008843 72 -------LP----------------------------------------------------EILS--------------- 77 (551)
Q Consensus 72 -------~~----------------------------------------------------~~~~--------------- 77 (551)
.. ...+
T Consensus 774 ~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~ 853 (986)
T 2iw3_A 774 MDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVES 853 (986)
T ss_dssp TTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHH
T ss_pred hhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhh
Confidence 00 0000
Q ss_pred -------------------HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC
Q 008843 78 -------------------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138 (551)
Q Consensus 78 -------------------~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPts 138 (551)
....+++++++++.+||.+.. ..++++++|||||||||+||++|+.+|++|+|||||+
T Consensus 854 ~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~---~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~ 930 (986)
T 2iw3_A 854 HSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI---VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH---HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGG
T ss_pred HhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh---hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 001135678899999995311 0234577899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 139 GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 139 GLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
|||+.+...+.+.|+++ |.|||++||++ ..+...||++++|++|+++..|+
T Consensus 931 gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 931 YLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred CCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999888765 67999999996 46778899999999999987764
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3e-28 Score=270.06 Aligned_cols=170 Identities=26% Similarity=0.308 Sum_probs=127.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEE-----------ECCEeCCcc-------cceEEEEccCCCC------CC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-----------VNGKPSSNK-------AYKFAYVRQEDLF------FS 56 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~-----------i~g~~~~~~-------~~~i~yv~Q~~~l------~~ 56 (551)
+||||||||||||+|+|+++|+ +|+|. +.|...... .....+.+|.... -+
T Consensus 109 vGpNGaGKSTLLkiL~Gll~P~-----~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGKQKPN-----LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183 (608)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCC-----TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred ECCCCChHHHHHHHHhcCCCCC-----CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence 6999999999999999999987 56652 223221110 0112233443211 11
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCC
Q 008843 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP 136 (551)
Q Consensus 57 ~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEP 136 (551)
..++.+++.... ++..++++++++.+||.+..| +.+++|||||||||+||++|+.+|++|+||||
T Consensus 184 ~~~v~~~l~~~~----------~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGe~Qrv~iAraL~~~p~llllDEP 248 (608)
T 3j16_B 184 VQKVGELLKLRM----------EKSPEDVKRYIKILQLENVLK-----RDIEKLSGGELQRFAIGMSCVQEADVYMFDEP 248 (608)
T ss_dssp SSHHHHHHHHHC----------CSCHHHHHHHHHHHTCTGGGG-----SCTTTCCHHHHHHHHHHHHHHSCCSEEEEECT
T ss_pred hhHHHHHHhhhh----------hhHHHHHHHHHHHcCCcchhC-----CChHHCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 235555544311 012356889999999976554 45678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEe
Q 008843 137 TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYA 191 (551)
Q Consensus 137 tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 191 (551)
|+|||+.++..+.+.|++++++|+|||+++|++ .++..++|++++|++|..++.
T Consensus 249 ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 249 SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp TTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence 999999999999999999998899999999996 578889999999988766553
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=7.1e-26 Score=259.86 Aligned_cols=124 Identities=30% Similarity=0.404 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC---ceEEEe
Q 008843 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYAD 134 (551)
Q Consensus 58 lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p---~illLD 134 (551)
+||.|++.|.... ...+++.++|+.+||... ..++++..|||||||||+||++|+.+| ++|+||
T Consensus 767 ~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~----~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILD 833 (916)
T 3pih_A 767 MTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYV----KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILD 833 (916)
T ss_dssp SBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGS----BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEE
T ss_pred CCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchh----hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEE
Confidence 6788888775321 123467789999999532 124567899999999999999999875 799999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 135 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
|||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|+|++| ++|++++.|++++
T Consensus 834 EPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 834 EPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 999999999999999999999988999999999974 45 459999999 8999999999876
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.93 E-value=3e-26 Score=261.46 Aligned_cols=125 Identities=28% Similarity=0.419 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC---ceEEE
Q 008843 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYA 133 (551)
Q Consensus 57 ~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p---~illL 133 (551)
.+||.|++.|.... . ..+++.++++.+||... ..++.+..|||||||||+||++|+.+| ++|+|
T Consensus 806 ~ltv~e~l~~~~~~-------~--~~~~~~~~L~~~gL~~~----~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLIL 872 (972)
T 2r6f_A 806 DMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYM----KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 872 (972)
T ss_dssp TSBHHHHHHHTCSC-------H--HHHHHHHHHHHTTCSSS----BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEE
T ss_pred hcCHHHHHHHHhcc-------h--hHHHHHHHHHHcCCCcc----cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 35788887764321 1 12345789999999641 223467789999999999999999865 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
||||+|||+.++..+++.|++++++|.|||+++|++. .+ ..+|++++| ++|++++.|++++
T Consensus 873 DEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~e 939 (972)
T 2r6f_A 873 DEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEE 939 (972)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHH
Confidence 9999999999999999999999988999999999975 44 579999999 7899999998765
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.92 E-value=2.5e-25 Score=236.54 Aligned_cols=80 Identities=26% Similarity=0.326 Sum_probs=74.1
Q ss_pred CChHHhHHHHHHHHHhhCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE----
Q 008843 110 ISGGEKKRLSLACELIASP--SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL---- 183 (551)
Q Consensus 110 LSGGerqRvsIa~~L~~~p--~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL---- 183 (551)
||||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|.|||++||++ ++...+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999998 689999999997 345779999999
Q ss_pred cCCeEEEec
Q 008843 184 TEGKLVYAG 192 (551)
Q Consensus 184 ~~G~iv~~G 192 (551)
++|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 999987654
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=2.1e-25 Score=254.05 Aligned_cols=108 Identities=32% Similarity=0.384 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhC---CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 83 EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS---PSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 83 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~---p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
+++.++++.+||... ..++.+..|||||||||+||++|+.+ |++|+|||||+|||+.+..++++.|++++++|
T Consensus 708 ~~~~~~L~~~gL~~~----~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G 783 (842)
T 2vf7_A 708 FRALDTLREVGLGYL----RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783 (842)
T ss_dssp HHHHHHHHHTTCTTS----BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcc----cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 467899999999642 12456789999999999999999996 79999999999999999999999999999889
Q ss_pred CEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
.|||+++|++. .+ ..+|+|++| ++|++++.|++++
T Consensus 784 ~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~e 824 (842)
T 2vf7_A 784 NTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAE 824 (842)
T ss_dssp CEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred CEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHH
Confidence 99999999964 55 679999999 7999999998765
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5e-28 Score=260.31 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=132.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceee-E-EEECCEeCCcccceEEEEccCCC---CCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-L-LEVNGKPSSNKAYKFAYVRQEDL---FFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G-~-i~i~g~~~~~~~~~i~yv~Q~~~---l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|+.+++ +| + |.+||. .++.++|++|+.. +.+.+||+||+ |+...... .
T Consensus 144 vGpnGsGKSTLlr~L~Gl~~p~-----~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~-~ 212 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCSYALKF-----NAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSG-A 212 (460)
T ss_dssp EESTTSSHHHHHHHHHHTTHHH-----HCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSS-C
T ss_pred ECCCCCCHHHHHHHHhCccccc-----CCceeEEEcCC----ccCCeeeeccchhhcccccccchhhhh-cccccccC-c
Confidence 5999999999999999998876 79 8 999983 2456899999984 45568999998 65432111 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHH--HhhCCce----EEEeC-CCCCCCHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACE--LIASPSV----IYADE-PTTGLDAFQAEKV 148 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~--L~~~p~i----llLDE-PtsGLD~~~~~~i 148 (551)
...+++.++++.+|+.+..+ +++|||||||||+||++ |+.+|++ |+||| ||+|||+. ...+
T Consensus 213 ----~~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l 280 (460)
T 2npi_A 213 ----TLLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAEL 280 (460)
T ss_dssp ----CSSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHH
T ss_pred ----chHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHH
Confidence 01233556778888865443 56899999999999999 9999999 99999 99999999 5445
Q ss_pred HHHHHHHHhCCCEEEEEecCCch-----hHHhhccc-----EEEEc-CCeEEEecCCCC
Q 008843 149 MEALRQLAQDGHTVICSIHQPRG-----SVYFKFDD-----IVLLT-EGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~~~~-----~i~~~~D~-----v~lL~-~G~iv~~G~~~~ 196 (551)
.+++++ .|.|+|+++|+... .+..++|+ |++|+ +|+++ .|++++
T Consensus 281 ~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~ 335 (460)
T 2npi_A 281 HHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVY 335 (460)
T ss_dssp HHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHH
T ss_pred HHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHH
Confidence 555444 37899999999751 45578999 99999 99999 887654
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=1.1e-25 Score=257.77 Aligned_cols=124 Identities=28% Similarity=0.352 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC---ceEEEe
Q 008843 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYAD 134 (551)
Q Consensus 58 lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p---~illLD 134 (551)
+||.|++.|.... . ..+++.++++.+||... ..++.+..|||||||||+||++|+.+| ++|+||
T Consensus 825 ltv~e~l~~~~~~-------~--~~~~~~~~L~~lgL~~~----~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILD 891 (993)
T 2ygr_A 825 MSIEEAAEFFEPI-------A--GVHRYLRTLVDVGLGYV----RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILD 891 (993)
T ss_dssp SBHHHHHHHSTTC-------H--HHHHHHHHHHHTTGGGS----BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEE
T ss_pred ccHHHHHHHhhcc-------h--HHHHHHHHHHHcCCCcc----cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5777777764321 1 12345789999999541 224467789999999999999999865 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 135 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
|||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++| ++|++++.|++++
T Consensus 892 EPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~e 957 (993)
T 2ygr_A 892 EPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPED 957 (993)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHH
Confidence 999999999999999999999988999999999975 44 579999999 7899999998765
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=3.7e-23 Score=216.69 Aligned_cols=84 Identities=25% Similarity=0.396 Sum_probs=77.4
Q ss_pred CcCCCCChHHhHHHHHHHHHh------hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcc
Q 008843 105 AKVRGISGGEKKRLSLACELI------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178 (551)
Q Consensus 105 ~~~~~LSGGerqRvsIa~~L~------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D 178 (551)
+++.+|||||||||+||++|+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++|++. . ...+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-~-~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-F-SEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-H-HTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-H-HHhCC
Confidence 467899999999999999999 699999999999999999999999999999988999999999974 3 66799
Q ss_pred cEEEEcCCeEEE
Q 008843 179 DIVLLTEGKLVY 190 (551)
Q Consensus 179 ~v~lL~~G~iv~ 190 (551)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=8.7e-23 Score=210.30 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCcCCCCChHHhHHHHHHHHHh----hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhccc
Q 008843 104 DAKVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179 (551)
Q Consensus 104 ~~~~~~LSGGerqRvsIa~~L~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~ 179 (551)
+..+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|.+||+++|++ ++...+|+
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~ 290 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADL 290 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCce
Confidence 3456799999999999999997 5789999999999999999999999999985 588999999995 45678998
Q ss_pred E--EEEcCCeE-EEecCCC
Q 008843 180 I--VLLTEGKL-VYAGPAR 195 (551)
Q Consensus 180 v--~lL~~G~i-v~~G~~~ 195 (551)
+ +++.+|+. +.....+
T Consensus 291 ~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEEESSSCEEEEECCC-
T ss_pred EEEEEEeCCEEEEEEEEcc
Confidence 6 77887764 4334333
No 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.87 E-value=5e-23 Score=194.30 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=99.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCC--cccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~--~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||+|+|+|.+. +.+.|... .+.. ...+++||++|+. ++.+++ + +..
T Consensus 6 ~G~nGsGKTTLl~~l~g~l~----i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~-------- 62 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVERLG----KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSK-------- 62 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHHG----GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EET--------
T ss_pred ECCCCCCHHHHHHHHHHHhC----CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhh--------
Confidence 59999999999999999874 23445321 1221 2245689999975 222332 1 110
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHH-----HhhCCceEEEeC--CCCCCCHHHHHHHHHH
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACE-----LIASPSVIYADE--PTTGLDAFQAEKVMEA 151 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~-----L~~~p~illLDE--PtsGLD~~~~~~i~~~ 151 (551)
+... + ...++++..||||||||++||++ |+.+|++++||| ||++||+.....+.+.
T Consensus 63 --------------~~~~--~-~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 63 --------------FFTS--K-KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp --------------TCCC--S-SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred --------------cCCc--c-ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 0000 0 11234567899999999999996 999999999999 9999999999999988
Q ss_pred HHHHHhCCCEEEEEec--CCchhHHhhcccEEEEcCCeEEE
Q 008843 152 LRQLAQDGHTVICSIH--QPRGSVYFKFDDIVLLTEGKLVY 190 (551)
Q Consensus 152 L~~la~~g~tvi~~~H--~~~~~i~~~~D~v~lL~~G~iv~ 190 (551)
+++ .+.|+|+++| +....+...+|+ .+|+++.
T Consensus 126 l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 126 MHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred Hhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 876 4678999997 334567777787 5667665
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=6.5e-25 Score=212.33 Aligned_cols=125 Identities=20% Similarity=0.235 Sum_probs=85.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEEC--CEeCCcccceEEEEccCCCCCCCCCHHHHH-HHHH----HcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN--GKPSSNKAYKFAYVRQEDLFFSQLTVRETL-SLAA----ELQLP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~--g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l-~~~~----~l~~~ 73 (551)
+||||||||||+|+|+|+ +|+ +|+|... ..+....++++|||+|++ +||+ .+.. .+..
T Consensus 28 iG~nGsGKSTLl~~l~Gl-~p~-----~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~~- 92 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ-ALQ-----SKQVSRIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALRD- 92 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH-HHH-----TTSCSEEEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHTT-
T ss_pred ECCCCCCHHHHHHHHhcC-CCc-----CCeeeeEEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHHH-
Confidence 599999999999999999 775 3444210 112122345699999975 4444 2211 1110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (551)
... .++++++++. |+ |||||++|||+|+.+|++|+|||||+| ++..+.+.|+
T Consensus 93 -~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~ 144 (208)
T 3b85_A 93 -MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT 144 (208)
T ss_dssp -TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred -hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence 001 1235555554 32 999999999999999999999999999 8899999999
Q ss_pred HHHhCCCEEEEEecCCc
Q 008843 154 QLAQDGHTVICSIHQPR 170 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~ 170 (551)
++ ++|+||| +||++.
T Consensus 145 ~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 145 RL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp TB-CTTCEEE-EEEC--
T ss_pred Hh-cCCCEEE-EECCHH
Confidence 98 6789999 999974
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=2.3e-23 Score=220.59 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=119.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|+.+++ +|+|.++|.+.+. .+|++|++ .++.+|+.|++.+...
T Consensus 75 vG~nGaGKSTLln~L~Gl~~p~-----~GsI~~~g~~~t~----~~~v~q~~-~~~~ltv~D~~g~~~~----------- 133 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGIGNEE-----EGAAKTGVVEVTM----ERHPYKHP-NIPNVVFWDLPGIGST----------- 133 (413)
T ss_dssp EECTTSSHHHHHHHHHTCCTTS-----TTSCCCCC----C----CCEEEECS-SCTTEEEEECCCGGGS-----------
T ss_pred ECCCCCcHHHHHHHHhCCCCcc-----CceEEECCeecce----eEEecccc-ccCCeeehHhhcccch-----------
Confidence 5999999999999999999887 7889888876532 27899985 5778899998755320
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChH--HhHHHHHHHHHhh----------CCceEEEeCCCCCCCHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG--EKKRLSLACELIA----------SPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG--erqRvsIa~~L~~----------~p~illLDEPtsGLD~~~~~~i 148 (551)
+.++++.++.+++.+.. . .+. +||| ||||+.||++|+. +|++++|||||+|||+.++.++
T Consensus 134 -~~~~~~~L~~~~L~~~~-~-----~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l 205 (413)
T 1tq4_A 134 -NFPPDTYLEKMKFYEYD-F-----FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKV 205 (413)
T ss_dssp -SCCHHHHHHHTTGGGCS-E-----EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHH
T ss_pred -HHHHHHHHHHcCCCccC-C-----eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHH
Confidence 12467889999986532 1 222 9999 9999999999999 9999999999999999999999
Q ss_pred HHHHHHHH-----hCC----CEEEEEecCCch-hHHhhcccEE
Q 008843 149 MEALRQLA-----QDG----HTVICSIHQPRG-SVYFKFDDIV 181 (551)
Q Consensus 149 ~~~L~~la-----~~g----~tvi~~~H~~~~-~i~~~~D~v~ 181 (551)
++.++++. +.| .+|++++|+... .+..++|++.
T Consensus 206 ~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 206 LQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999985 333 578899998653 3667777664
No 71
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=1.7e-22 Score=203.11 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=92.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||+|+|+|...++ +|+|.++|+++... .+.++|++|++.+++.+||.||+.|+...... ...
T Consensus 8 vG~nGaGKSTLln~L~g~~~~~-----~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~~~ 80 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKSQVSR-----KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--NCW 80 (270)
T ss_dssp EESSSSSHHHHHHHHHHHHC-----------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--TCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--HHH
Confidence 5999999999999999999887 89999999877543 35699999999999999999999887543211 111
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (551)
+.+.+.++ .+.. +.....||||||||+++||+++. ++++|||++|||+.. .+.++++.+.
T Consensus 81 ----~~i~~~~~----~~~~-----~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~ 140 (270)
T 3sop_A 81 ----EPIEKYIN----EQYE-----KFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV 140 (270)
T ss_dssp ----HHHHHHHH----HHHH-----HHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred ----HHHHHHHH----HHHH-----hhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence 12222222 1111 22345799999999999999875 999999999999987 5566667665
Q ss_pred CCEEEEEecCC
Q 008843 159 GHTVICSIHQP 169 (551)
Q Consensus 159 g~tvi~~~H~~ 169 (551)
.+||+++|..
T Consensus 141 -~~vI~Vi~K~ 150 (270)
T 3sop_A 141 -VNIIPVIAKA 150 (270)
T ss_dssp -SEEEEEETTG
T ss_pred -CcEEEEEecc
Confidence 8999999873
No 72
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.5e-20 Score=215.87 Aligned_cols=162 Identities=26% Similarity=0.385 Sum_probs=124.3
Q ss_pred HHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC--HH---HHHHH
Q 008843 10 TLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS--VE---ERDEY 84 (551)
Q Consensus 10 TLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~--~~---~~~~~ 84 (551)
|...|..+++.+. .++|.++|+++.. +..+||.|++.|...+.++.... .. +..+.
T Consensus 383 ~C~~C~g~rl~~~-----~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (916)
T 3pih_A 383 TCSVCGGRRLNRE-----ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEK 443 (916)
T ss_dssp ECTTTCSCCBCTT-----GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHH
T ss_pred cchhcccccCChH-----hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHH
Confidence 3445556667665 7889999987633 34468889888865543321110 00 11123
Q ss_pred HHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCc--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 008843 85 VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162 (551)
Q Consensus 85 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~--illLDEPtsGLD~~~~~~i~~~L~~la~~g~tv 162 (551)
..+.+..+||.+.. .++.+..|||||||||.||++|+++|+ +|+|||||+|||+.....+++.|++++++|.||
T Consensus 444 ~~~~L~~vgL~~l~----l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 444 RLEFLVDVGLEYLT----LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHHHTTTCTTCB----TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHHHcCCcccc----ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 45678889996431 245677899999999999999999887 999999999999999999999999999889999
Q ss_pred EEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 163 ICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 163 i~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
|+++|++. .+. .+|+|++| ++|++++.|++++
T Consensus 520 ivVtHd~~-~~~-~aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 520 IVVEHDEE-VIR-NADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp EEECCCHH-HHH-TCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred EEEeCCHH-HHH-hCCEEEEEcCCcccCCCEEEEeechhh
Confidence 99999963 454 59999999 8999999999866
No 73
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.81 E-value=2e-21 Score=181.82 Aligned_cols=63 Identities=11% Similarity=0.240 Sum_probs=58.2
Q ss_pred CCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q 008843 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF----------------QAEKVMEALRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~----------------~~~~i~~~L~~la~~g~tvi~~~H~~~ 170 (551)
...|||||||++||++++.+|++++|||||+|||+. .+.++.+.|++++++|.|+|+++|++.
T Consensus 82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 346999999999999999999999999999999999 568899999999878999999999964
No 74
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.78 E-value=5.2e-19 Score=183.40 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=70.8
Q ss_pred CCcCCCCChHHhH------HHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhc
Q 008843 104 DAKVRGISGGEKK------RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177 (551)
Q Consensus 104 ~~~~~~LSGGerq------RvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~ 177 (551)
+..++.||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||+++|++ ++...+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~ 320 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 320 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhC
Confidence 3467899999999 66777888889999999999999999999999999999988889999999995 467889
Q ss_pred ccEEEEc
Q 008843 178 DDIVLLT 184 (551)
Q Consensus 178 D~v~lL~ 184 (551)
|+++.|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999985
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.78 E-value=1e-18 Score=199.58 Aligned_cols=135 Identities=24% Similarity=0.410 Sum_probs=110.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCC---CC---HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC
Q 008843 55 FSQLTVRETLSLAAELQLPEI---LS---VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP 128 (551)
Q Consensus 55 ~~~lTV~e~l~~~~~l~~~~~---~~---~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p 128 (551)
+..+||.|++.|...+.++.. .. .++..+++ +.|+.+||... -.++.+..|||||||||.||++|..+|
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l----~ldR~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYL----TLSRSAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTS----BSSSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCcc----ccCCccccCCHHHHHHHHHHHHHhhCC
Confidence 345899999999877754321 00 02344555 45899999643 124567789999999999999999985
Q ss_pred --ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 129 --SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 129 --~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++. .+ ..+|+|++| ++|++++.|++++
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-HH-HSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 999999999999999999999999999988999999999964 44 569999999 7999999999987
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.78 E-value=4e-23 Score=199.17 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=112.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-ccceEEEEccCCCCCCCCCHHHHHHHHHHcCC---CCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQEDLFFSQLTVRETLSLAAELQL---PEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~---~~~~ 76 (551)
+||||||||||+|+|+|+.+. . .+.+.+.+.+... ..+.++|++|+...++.+|+.|++........ ....
T Consensus 26 ~GpnGsGKSTLl~~l~gl~~~---i--~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~ 100 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRERIPN---L--HFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGT 100 (207)
T ss_dssp ECSTTSSHHHHHHHHHHHSTT---C--EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEE
T ss_pred ECCCCCCHHHHHHHHHhhCCc---e--EEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCC
Confidence 599999999999999999852 1 2222233322211 23458999999888888888877642211100 0012
Q ss_pred CHHHHHHHHHHH------HHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCC----CHHHHH
Q 008843 77 SVEERDEYVNSL------LFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGL----DAFQAE 146 (551)
Q Consensus 77 ~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGL----D~~~~~ 146 (551)
++++.++++++. ++.+|+.+.++ .+++.|| +|+.+|++++|||||+|+ |+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~ 164 (207)
T 1znw_A 101 LAQPVRAAAATGVPVLIEVDLAGARAIKK-----TMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQR 164 (207)
T ss_dssp EHHHHHHHHHHTCCEEEECCHHHHHHHHH-----HCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHH
T ss_pred cHHHHHHHHHcCCeEEEEeCHHHHHHHHH-----hcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHH
Confidence 344455555554 44555533322 3445666 889999999999999998 788999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEc
Q 008843 147 KVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 147 ~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
++.+.++++++ .|.|+|+++|++ .++...+|++++|.
T Consensus 165 ~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 165 RLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999999984 589999999996 57888999999984
No 77
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.77 E-value=2.7e-19 Score=203.88 Aligned_cols=172 Identities=22% Similarity=0.262 Sum_probs=125.4
Q ss_pred CCCcHHHHHHHHHcCc-CCCCCcc---eeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcC--------
Q 008843 4 SGSGKTTLLNVLAGQL-MASPRLH---LSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQ-------- 71 (551)
Q Consensus 4 sGaGKSTLL~~L~g~~-~~~~~~~---~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~-------- 71 (551)
|..||++|.+.+.... +...+.. ..|+|.++|+++.+.. .+++.|.+.|.....
T Consensus 271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~--------------~~~v~e~~~~~~~~~~~~~~~~~ 336 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELS--------------RLPLARVSELLRPYAEEREPGHA 336 (842)
T ss_dssp CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHH--------------HSBHHHHHHHHHHHHTTCSSCST
T ss_pred CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHh--------------hcCHHHHHHHHHhhhhhhhhccc
Confidence 4468999998887732 2211111 3677888888764421 134444444433321
Q ss_pred ----CCCCC---C---HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC--ceEEEeCCCCC
Q 008843 72 ----LPEIL---S---VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--SVIYADEPTTG 139 (551)
Q Consensus 72 ----~~~~~---~---~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p--~illLDEPtsG 139 (551)
+.... . .++..++++ .++.+||.+. ..++.+..|||||||||.||++|..+| .+++|||||+|
T Consensus 337 ~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l----~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~ 411 (842)
T 2vf7_A 337 ERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYL----GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAG 411 (842)
T ss_dssp TSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTS----BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTT
T ss_pred chhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcC----CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCcccc
Confidence 00000 0 234556665 6889999643 124567789999999999999999999 59999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 140 LDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 140 LD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
||+.....++++|++|++.|.|||+++|++. +...+|+|++| ++|++++.|++++
T Consensus 412 Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 412 LHPADTEALLSALENLKRGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp CCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence 9999999999999999988999999999974 45679999999 7999999999876
No 78
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=1.9e-20 Score=191.07 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=116.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----------cceEEEEccCCC-CCCCCCHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDL-FFSQLTVRETLSLAA 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----------~~~i~yv~Q~~~-l~~~lTV~e~l~~~~ 68 (551)
+||||||||||++.|+|++++. +|+|.++|.+..+. +..++|++|++. +++.+||+|++.++.
T Consensus 106 vG~nGsGKTTll~~Lag~l~~~-----~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAHRLKNE-----GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180 (302)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHT-----TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence 5999999999999999998876 79999999876432 124899999988 899999999998864
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCc--eEEEeCCCCCCCHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAE 146 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~--illLDEPtsGLD~~~~~ 146 (551)
... .. ..+++.+|+.+..+ ..+++|| |||++||++|+.+|+ +|+|| ||+|||+..+
T Consensus 181 ~~~----~d--------~~lldt~gl~~~~~-----~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~- 238 (302)
T 3b9q_A 181 EEG----YD--------VVLCDTSGRLHTNY-----SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ- 238 (302)
T ss_dssp HTT----CS--------EEEECCCCCSSCCH-----HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-
T ss_pred HcC----Cc--------chHHhcCCCCcchh-----HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-
Confidence 311 00 13456677755443 3456799 999999999999999 99999 9999998754
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc--------hhHHhhcccEEEEcCCeE
Q 008843 147 KVMEALRQLA-QDGHTVICSIHQPR--------GSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 147 ~i~~~L~~la-~~g~tvi~~~H~~~--------~~i~~~~D~v~lL~~G~i 188 (551)
++++. +.|.|+|++||... ..+....+.|..+..|+.
T Consensus 239 -----~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 239 -----AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -----HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -----HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 34555 35899999999432 122334456777777754
No 79
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.76 E-value=1e-18 Score=159.65 Aligned_cols=83 Identities=25% Similarity=0.319 Sum_probs=74.4
Q ss_pred CCcCCCCChHHhHHHHHH------HHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhc
Q 008843 104 DAKVRGISGGEKKRLSLA------CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177 (551)
Q Consensus 104 ~~~~~~LSGGerqRvsIa------~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~ 177 (551)
+..++.||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++ ++...+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 456789999999999886 899999999999999999999999999999999987799999999996 456789
Q ss_pred ccEEEE--cCCeE
Q 008843 178 DDIVLL--TEGKL 188 (551)
Q Consensus 178 D~v~lL--~~G~i 188 (551)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 80
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.75 E-value=1.9e-18 Score=198.04 Aligned_cols=136 Identities=24% Similarity=0.365 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCC------HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhC
Q 008843 54 FFSQLTVRETLSLAAELQLPEILS------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS 127 (551)
Q Consensus 54 l~~~lTV~e~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~ 127 (551)
-+..+||.|.+.|...+.++.... .++..+++ +.++.+||... -.++.+..|||||||||.||++|..+
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l----~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYL----SLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGS----CTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCcc----ccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 355689999999965554331000 02344555 35788999542 12456778999999999999999999
Q ss_pred --CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEE------cCCeEEEecCCCC
Q 008843 128 --PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (551)
Q Consensus 128 --p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (551)
|++|+|||||+|||+.....+++.|++|++.|.|||+++|++. .+ ..+|+|++| ++|++++.|++++
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-TI-EHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-HTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-HH-HhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 5899999999999999999999999999999999999999964 44 579999999 7999999998765
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.73 E-value=1.7e-19 Score=187.74 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=117.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----------cceEEEEccCCC-CCCCCCHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDL-FFSQLTVRETLSLAA 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----------~~~i~yv~Q~~~-l~~~lTV~e~l~~~~ 68 (551)
+||||||||||++.|+|++++. +|+|.++|.+..+. +..++|++|++. +++.+|++|++.++.
T Consensus 163 vG~nGsGKTTll~~Lag~l~~~-----~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAHRLKNE-----GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 237 (359)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHT-----TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHhhcccc-----CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence 5999999999999999998876 79999999876432 124899999988 889999999998864
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCc--eEEEeCCCCCCCHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAE 146 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~--illLDEPtsGLD~~~~~ 146 (551)
... .. ..+++.+|+.+..+ ..+++|| |||++||++|+.+|+ +|+|| ||+|||+.++.
T Consensus 238 ~~~----~d--------~~lldt~Gl~~~~~-----~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~ 296 (359)
T 2og2_A 238 EEG----YD--------VVLCDTSGRLHTNY-----SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 296 (359)
T ss_dssp HTT----CS--------EEEEECCCCSSCCH-----HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred hCC----CH--------HHHHHhcCCChhhh-----hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence 311 00 12456677755443 3456799 999999999999999 99999 99999987653
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc--------hhHHhhcccEEEEcCCeE
Q 008843 147 KVMEALRQLA-QDGHTVICSIHQPR--------GSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 147 ~i~~~L~~la-~~g~tvi~~~H~~~--------~~i~~~~D~v~lL~~G~i 188 (551)
+++. +.|.|+|++||... .......+.|..+..|+.
T Consensus 297 ------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 ------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp ------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred ------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 4454 35899999999421 122334456776766643
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.72 E-value=1.4e-18 Score=179.39 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=89.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+|+|+|..+++ +|.|.++|.+... .+..+++++
T Consensus 177 ~G~~GsGKTTll~~l~g~~~~~-----~g~i~i~~~~e~~~~~~~~~i~~~~---------------------------- 223 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEFIPKE-----ERIISIEDTEEIVFKHHKNYTQLFF---------------------------- 223 (330)
T ss_dssp EESTTSCHHHHHHHGGGGSCTT-----SCEEEEESSCCCCCSSCSSEEEEEC----------------------------
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-----CcEEEECCeeccccccchhEEEEEe----------------------------
Confidence 5999999999999999999887 7999998864211 111233321
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
+ |||+||++||++|..+|+++++||||+ .++.+.|+.+..
T Consensus 224 -------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~ 263 (330)
T 2pt7_A 224 -------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCS 263 (330)
T ss_dssp -------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHT
T ss_pred -------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhc
Confidence 1 899999999999999999999999998 245677777765
Q ss_pred CCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 158 ~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
.+.|+++++|+++ ....+||+++|.+|+.
T Consensus 264 g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 264 GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 4458999999975 6677899999988753
No 83
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.71 E-value=4.6e-21 Score=195.17 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=101.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHH-HHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRE-TLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e-~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+++|+|++ +|+| ++|++|++.+++. |++| |+.+... .+.
T Consensus 132 vGpsGsGKSTLl~lL~gl~--------~G~I-------------~~~v~q~~~lf~~-ti~~~ni~~~~~------~~~- 182 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIHFL--------GGSV-------------LSFANHKSHFWLA-SLADTRAALVDD------ATH- 182 (305)
T ss_dssp ECSSSSSHHHHHHHHHHHH--------TCEE-------------ECGGGTTSGGGGG-GGTTCSCEEEEE------ECH-
T ss_pred ECCCCCcHHHHHHHHhhhc--------CceE-------------EEEecCccccccc-cHHHHhhccCcc------ccH-
Confidence 5999999999999999986 3776 3578898888875 7876 7765311 111
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
.+.+.++.+ |.+..| +..|||||||| ||+|+.+|+||| |++||+.++..+..
T Consensus 183 ----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 344555553 332222 45899999999 999999999999 99999999888862
Q ss_pred CEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCCchhhHHhh
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFSR 204 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~~ 204 (551)
.+|++. ....+|++ +|++|++++.|+.++ ....|..
T Consensus 235 -----ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~e-l~~~y~~ 270 (305)
T 2v9p_A 235 -----LHSRVQ--TFRFEQPC-TDESGEQPFNITDAD-WKSFFVR 270 (305)
T ss_dssp -----GTTTEE--EEECCCCC-CCC---CCCCCCHHH-HHHHHHH
T ss_pred -----HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHH-HHHHHHH
Confidence 178864 35679999 999999999998876 4444544
No 84
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.70 E-value=2.4e-20 Score=199.55 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=122.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE---eCCc----------ccceEEEEccC-CCCCCCCCHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSSN----------KAYKFAYVRQE-DLFFSQLTVRETLSL 66 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~---~~~~----------~~~~i~yv~Q~-~~l~~~lTV~e~l~~ 66 (551)
+||||||||||+++|+|..+++ .|.|.++|+ ++.. ..+.++||+|+ +.+++.+||.+|+.+
T Consensus 163 vG~sGsGKSTLl~~Iag~~~~~-----~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARYTRAD-----VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp EECTTSSHHHHHHHHHHHSCCS-----EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcccCCC-----eEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999887 899999998 4322 13459999995 567788899999988
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHH
Q 008843 67 AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (551)
Q Consensus 67 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~ 146 (551)
.+..... ..+++ + ...| .+..+|+|| ||++|| +.+|++ |+|||+.+..
T Consensus 238 ~ae~~~~-------~~~~v---~------~~ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~ 285 (438)
T 2dpy_A 238 IAEDFRD-------RGQHV---L------LIMD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFA 285 (438)
T ss_dssp HHHHHHT-------TTCEE---E------EEEE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHH
T ss_pred HHHHHHh-------CCCCH---H------HHHH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHH
Confidence 6643100 00000 0 0011 245799999 999999 888888 9999999999
Q ss_pred HHHHHHHHHHh---C-CC-----EEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 147 KVMEALRQLAQ---D-GH-----TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 147 ~i~~~L~~la~---~-g~-----tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
++.++++++.+ + |. ||++++||.+ ...+|++++|.+|+++..|++++
T Consensus 286 ~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~ 341 (438)
T 2dpy_A 286 KLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAE 341 (438)
T ss_dssp HHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHH
Confidence 99999999876 3 64 9999999986 46689999999999999887654
No 85
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.70 E-value=3.5e-20 Score=189.90 Aligned_cols=151 Identities=9% Similarity=0.003 Sum_probs=104.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|++++. .|. .++++|+|++.+++. |++||+.+.... ......
T Consensus 96 ~G~sGsGKSTL~~~L~gll~~~-----~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g~~~~~ 153 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQALLARW-----DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----GFPESY 153 (312)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTS-----TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----TSGGGB
T ss_pred ECCCCchHHHHHHHHHhhcccc-----CCC------------CeEEEEecCccCCcc-cHHHHHHHHHhc----CCChHH
Confidence 5999999999999999998764 231 458999999999988 999997542211 112222
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
..+.+.+.++.++ .+..+ ..+..|||||+||+++|++++.+|+|+|+|||+..+|+.. ..+.+.--
T Consensus 154 d~~~~~~~L~~l~-~~~~~-----~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D 219 (312)
T 3aez_A 154 NRRALMRFVTSVK-SGSDY-----ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFD 219 (312)
T ss_dssp CHHHHHHHHHHHH-TTCSC-----EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCS
T ss_pred HHHHHHHHHHHhC-CCccc-----CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcC
Confidence 3456778888887 43332 2456899999999999999999999999999999998621 11222112
Q ss_pred EEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
.+|++.|+.........+|.+.+.+|+
T Consensus 220 ~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 220 FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 345556654443444456655555553
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=2.4e-17 Score=180.67 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=107.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||++.++|...+. |+ +.+.+++|+.. .++.++. ..+ ....
T Consensus 287 ~G~~GsGKSTLl~~l~g~~~~~------G~------------~vi~~~~ee~~----~~l~~~~---~~~----g~~~-- 335 (525)
T 1tf7_A 287 TGATGTGKTLLVSRFVENACAN------KE------------RAILFAYEESR----AQLLRNA---YSW----GMDF-- 335 (525)
T ss_dssp EECTTSSHHHHHHHHHHHHHTT------TC------------CEEEEESSSCH----HHHHHHH---HTT----SCCH--
T ss_pred EeCCCCCHHHHHHHHHHHHHhC------CC------------CEEEEEEeCCH----HHHHHHH---HHc----CCCH--
Confidence 4999999999999999987653 22 12456666641 1222221 111 1111
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHH-----HHHHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF-----QAEKVMEALRQL 155 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~-----~~~~i~~~L~~l 155 (551)
++ +...|+.+.. +..+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.++++.+
T Consensus 336 -----~~-~~~~g~~~~~-----~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l 403 (525)
T 1tf7_A 336 -----EE-MERQNLLKIV-----CAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYA 403 (525)
T ss_dssp -----HH-HHHTTSEEEC-----CCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred -----HH-HHhCCCEEEE-----EeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHH
Confidence 12 2345654333 3456789999999999999999999999999 99999999 999999999999
Q ss_pred HhCCCEEEEEecCCc---------hhHHhhcccEEEEcCCe
Q 008843 156 AQDGHTVICSIHQPR---------GSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 156 a~~g~tvi~~~H~~~---------~~i~~~~D~v~lL~~G~ 187 (551)
++.|.|||+++|++. ..+..++|+|++|++|+
T Consensus 404 ~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 404 KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 988999999999971 45677899999998876
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.66 E-value=2.3e-17 Score=167.26 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=102.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceee-EEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-LLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G-~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||++.|+|...+. +| .|.+.+.+.... .+++..+.|+.. +++.+++.... + +
T Consensus 41 ~G~~G~GKTTl~~~ia~~~~~~-----~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~l~~~~-~------~ 104 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQWGTA-----MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDSLKREI-I------E 104 (296)
T ss_dssp EESTTSSHHHHHHHHHHHHHHT-----SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHHHHHHH-H------H
T ss_pred EeCCCCCHHHHHHHHHHHHHHH-----cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccccccCC-C------C
Confidence 4999999999999999998764 35 554433222211 122333333321 12223333221 1 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHH-hHHHHHHHHHhhCCceEEEeCCCC---C---CCH-HHHHHHH
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE-KKRLSLACELIASPSVIYADEPTT---G---LDA-FQAEKVM 149 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRvsIa~~L~~~p~illLDEPts---G---LD~-~~~~~i~ 149 (551)
.++.++.++++++..++. + ...+..+|.+| +||+. |+++..+|+++++||||+ + +|. ....+++
T Consensus 105 ~~~~~~~~~~~l~~~~l~------i-~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~ 176 (296)
T 1cr0_A 105 NGKFDQWFDELFGNDTFH------L-YDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM 176 (296)
T ss_dssp HTHHHHHHHHHHSSSCEE------E-ECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEE------E-ECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH
Confidence 223344455555433331 1 11234689998 66676 999999999999999999 5 555 6678899
Q ss_pred HHHHHHHhC-CCEEEEEecCCc-h--------------------hHHhhcccEEEEcCCeE
Q 008843 150 EALRQLAQD-GHTVICSIHQPR-G--------------------SVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 150 ~~L~~la~~-g~tvi~~~H~~~-~--------------------~i~~~~D~v~lL~~G~i 188 (551)
+.|++++++ |.|||+++|+.. . .+...+|+|++|++|+.
T Consensus 177 ~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 177 TKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 999999864 999999999952 2 67788999999988864
No 88
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=1.6e-17 Score=163.17 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=92.8
Q ss_pred CCCCCCcHHHHHHHHH--cCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLA--GQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~--g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+ |..+++ .|.+.+++...... .+.+++++|+....+.+++.++........
T Consensus 36 ~GpnGsGKSTLl~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 107 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFIYKGAEEYG-----EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP--- 107 (251)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccc---
Confidence 5999999999999999 653333 45666666543211 133677777654445455444322211000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCC-----HHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD-----AFQAEKVM 149 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD-----~~~~~~i~ 149 (551)
....... ....+-++..+......-..+|+++++||||++|| +..+..+.
T Consensus 108 -------~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~ 162 (251)
T 2ehv_A 108 -------SEEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLL 162 (251)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHH
T ss_pred -------cccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHH
Confidence 0000000 11233444444444444468999999999999997 66677799
Q ss_pred HHHHHHHhCCCEEEEEecCCchhH--------Hhhc-ccEEEEc
Q 008843 150 EALRQLAQDGHTVICSIHQPRGSV--------YFKF-DDIVLLT 184 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~i--------~~~~-D~v~lL~ 184 (551)
++++.++++|+|||+++|++.... ..+| |++++|+
T Consensus 163 ~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 163 KLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999999888999999999975431 5677 9999995
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.60 E-value=1.5e-19 Score=175.77 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=102.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc------ccceEEEEccCCCCCCCCCH-HHHHH---HHHHc
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQEDLFFSQLTV-RETLS---LAAEL 70 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~------~~~~i~yv~Q~~~l~~~lTV-~e~l~---~~~~l 70 (551)
+||||||||||+|+|+|+. | |+|.+ |.+... ....++|++|++..|+.++. .+++. +....
T Consensus 29 vGpsGsGKSTLl~~L~g~~-p-------G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNEF-P-------NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF 99 (218)
T ss_dssp ECSTTSSHHHHHHHHHHHS-T-------TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred ECCCCCCHHHHHHHHHhhC-C-------CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence 5999999999999999987 3 45666 554321 12458999998776654431 11111 11110
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHH-----HHHHhhCCceEEEeCCCCCCCHHHH
Q 008843 71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL-----ACELIASPSVIYADEPTTGLDAFQA 145 (551)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsI-----a~~L~~~p~illLDEPtsGLD~~~~ 145 (551)
. ..+ .+.++++++...+ ..+ ...+|||||||++| +++++.+|++++|||||+++|..+.
T Consensus 100 ~---g~~----~~~i~~~l~~~~~-----~il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~ 163 (218)
T 1z6g_A 100 Y---GTL----KSEYDKAKEQNKI-----CLF----EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQ 163 (218)
T ss_dssp E---EEE----HHHHHHHHHTTCE-----EEE----EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCH
T ss_pred C---CCc----HHHHHHHHhCCCc-----EEE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCH
Confidence 0 011 1235666665432 111 14699999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHh-------CCCEEEEEecCCchhHHhhcccEE
Q 008843 146 EKVMEALRQLAQ-------DGHTVICSIHQPRGSVYFKFDDIV 181 (551)
Q Consensus 146 ~~i~~~L~~la~-------~g~tvi~~~H~~~~~i~~~~D~v~ 181 (551)
..+.+.|+++.+ .+.+.|+++|++ .+++...|+++
T Consensus 164 ~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii 205 (218)
T 1z6g_A 164 EQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHH
Confidence 999998887653 234556666654 34444445544
No 90
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.59 E-value=1.8e-15 Score=174.60 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCCChHHhHHHHHHHHH--hhCCceEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEE
Q 008843 108 RGISGGEKKRLSLACEL--IASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLL 183 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L--~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL 183 (551)
+++|+|++++..+|+++ +++|++++|||||+|||+.....+ ..+++.+++ .|.++|++||++ ++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhccccee
Confidence 46899998888888888 999999999999999999999888 677788886 489999999995 466789999999
Q ss_pred cCCeEEEecCCCC
Q 008843 184 TEGKLVYAGPARD 196 (551)
Q Consensus 184 ~~G~iv~~G~~~~ 196 (551)
.+|++...++.++
T Consensus 798 ~ng~v~~~~~~~~ 810 (934)
T 3thx_A 798 NNLHVTALTTEET 810 (934)
T ss_dssp EEEEEEEEEETTE
T ss_pred EeeEEEEEecCCc
Confidence 9999999888776
No 91
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.59 E-value=5.2e-17 Score=157.40 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=86.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC--CCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMAS--PRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~--~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||+++|+|...+. ....-.|.+++++..... ..++++++|+..+++. |+.||+.+.
T Consensus 31 ~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~----------- 97 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-PERIREIAQNRGLDPD-EVLKHIYVA----------- 97 (231)
T ss_dssp EESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-HHHHHHHHHHTTSCHH-HHHHTEEEE-----------
T ss_pred ECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-HHHHHHHHHHcCCCHH-HHhhcEEEE-----------
Confidence 5999999999999999954432 111124566666543211 1123344444333322 333332211
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHH-hHHHHHHHHHhh-------CCceEEEeCCCCCCCHHH------
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE-KKRLSLACELIA-------SPSVIYADEPTTGLDAFQ------ 144 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRvsIa~~L~~-------~p~illLDEPtsGLD~~~------ 144 (551)
...++++ ++++..+.+++. +|+++++||||+++|+..
T Consensus 98 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~ 148 (231)
T 4a74_A 98 -----------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 148 (231)
T ss_dssp -----------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHH
T ss_pred -----------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcch
Confidence 1223333 333555555555 899999999999999842
Q ss_pred ------HHHHHHHHHHHHh-CCCEEEEEecCCc---hhHHhhcccEEEEcCC
Q 008843 145 ------AEKVMEALRQLAQ-DGHTVICSIHQPR---GSVYFKFDDIVLLTEG 186 (551)
Q Consensus 145 ------~~~i~~~L~~la~-~g~tvi~~~H~~~---~~i~~~~D~v~lL~~G 186 (551)
..++++.|+++++ .|.|||+++|... ..+...+|+++.|++|
T Consensus 149 ~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 149 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 2378888888874 5999999999533 2367789999999865
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.58 E-value=2.5e-18 Score=165.27 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=106.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCC--CCCCHHHHHHHHHHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF--SQLTVRETLSLAAELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~--~~lTV~e~l~~~~~l~~~~~~~~ 78 (551)
+||||||||||+++|+|++.+ .++|++|++.++ ..+|+.++..+... .+.
T Consensus 12 ~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~--~~~---- 63 (211)
T 3asz_A 12 AGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD--HPD---- 63 (211)
T ss_dssp EESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--SGG----
T ss_pred ECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC--Chh----
Confidence 499999999999999997632 478999998876 56899888655321 111
Q ss_pred HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHH----hHHHHHHHHHhhCCceEEEeCCCCC-------CCHHHHHH
Q 008843 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE----KKRLSLACELIASPSVIYADEPTTG-------LDAFQAEK 147 (551)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe----rqRvsIa~~L~~~p~illLDEPtsG-------LD~~~~~~ 147 (551)
....+++.+.++.+++.+..+. ++..+|+|| +||++++++++.+|+++++||||++ ||+.....
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~ 138 (211)
T 3asz_A 64 AFDLALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER 138 (211)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred hhhHHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence 1123456677888887554332 356799996 4788999999999999999999999 99999999
Q ss_pred HHHHHHHH-HhCCCEEEEEecCCc
Q 008843 148 VMEALRQL-AQDGHTVICSIHQPR 170 (551)
Q Consensus 148 i~~~L~~l-a~~g~tvi~~~H~~~ 170 (551)
+.+.+++. .++|+|++.++|+..
T Consensus 139 ~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 139 FIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999886 467999999999743
No 93
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.58 E-value=8e-17 Score=179.24 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=104.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCC-CCCcceeeEEEECCEeCC--------cccceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSS--------NKAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~-~~~~~~~G~i~i~g~~~~--------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+|||||||||||++|+|+..| + +|.|.++|.++. ..+.++||++|+..+++.+||+|++.++....
T Consensus 51 vG~nGsGKSTLL~~I~Gl~~P~~-----sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 51 IGDQSSGKSSVLEALSGVALPRG-----SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCCTTSCHHHHHHHHHSCC------------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred ECCCCChHHHHHHHHhCCCCCCC-----CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 699999999999999999877 4 799999998741 12356999999999999999999998764321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCC------CCCCCHHHH
Q 008843 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP------TTGLDAFQA 145 (551)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEP------tsGLD~~~~ 145 (551)
.... -++ | ++++.++.+...+|+++++||| |+|||+..+
T Consensus 126 ~~~~----------------~~~----------------s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~ 170 (608)
T 3szr_A 126 AGEG----------------MGI----------------S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIG 170 (608)
T ss_dssp HCSS----------------SCC----------------C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHH
T ss_pred cCCc----------------ccc----------------c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHH
Confidence 0000 011 1 1112222223458999999999 999999999
Q ss_pred HHHHHHHHHHHh--CCCEEEEEecCCchh------HHhhc-----ccEEEEcCCeEEEecCCCC
Q 008843 146 EKVMEALRQLAQ--DGHTVICSIHQPRGS------VYFKF-----DDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 146 ~~i~~~L~~la~--~g~tvi~~~H~~~~~------i~~~~-----D~v~lL~~G~iv~~G~~~~ 196 (551)
.++.++++++.+ .+.++++++|+.... +.... ..|.++.++..+..|+.++
T Consensus 171 ~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 171 YKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHH
Confidence 999999999753 356888899986421 11112 3478888888887777654
No 94
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.57 E-value=1.5e-16 Score=162.40 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=100.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----------cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDLFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||+++|+|++++. +|+|.++|.+.... +..++|++|+..++|.+||.|++.++..
T Consensus 108 vG~nGsGKTTll~~Lagll~~~-----~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 108 VGVNGVGKTTTIAKLGRYYQNL-----GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp ECSTTSSHHHHHHHHHHHHHTT-----TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHHHhc-----CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999886 79999999886432 1248999999998998999999886532
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
... + ..+++..|+.+.. .+-++..++||++|||+++.+|+.++| .||+.+..+++
T Consensus 183 ~~~----------d--~~llDt~G~~~~~--------~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 183 RGY----------D--LLFVDTAGRLHTK--------HNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HTC----------S--EEEECCCCCCTTC--------HHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred CCC----------C--EEEecCCCCCCch--------HHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 110 0 0122223332211 122455668999999999999994444 45555555677
Q ss_pred HHHHHHHhC-CCEEEEEecCCc
Q 008843 150 EALRQLAQD-GHTVICSIHQPR 170 (551)
Q Consensus 150 ~~L~~la~~-g~tvi~~~H~~~ 170 (551)
+.++++.++ |.|+|++||+..
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHcCCcEEEEECCcc
Confidence 777777654 899999999853
No 95
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.56 E-value=2.8e-16 Score=183.26 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=95.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEE-EEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFA-YVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~-yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||||+| |+..+ ..++| ||||+.. .+||.|++..
T Consensus 795 tGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~---~l~v~d~I~~------------- 837 (1022)
T 2o8b_B 795 TGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC---RLTPIDRVFT------------- 837 (1022)
T ss_dssp ECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE---EECCCSBEEE-------------
T ss_pred ECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC---CCCHHHHHHH-------------
Confidence 599999999999999 98642 12344 8999753 4455554310
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHH-HHHHHHHHHHHhC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA-EKVMEALRQLAQD 158 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~-~~i~~~L~~la~~ 158 (551)
.+|+.+..+ .....+|+|++ ++++|++++++|++++||||++|+|+... ..+.+.|+.++++
T Consensus 838 -----------rig~~d~~~-----~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~ 900 (1022)
T 2o8b_B 838 -----------RLGASDRIM-----SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET 900 (1022)
T ss_dssp -----------ECC--------------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred -----------HcCCHHHHh-----hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc
Confidence 112211111 11235677666 49999999999999999999999999985 4578899999876
Q ss_pred -CCEEEEEecCCchhHHhhcccEEEEcCCeEE--EecCC
Q 008843 159 -GHTVICSIHQPRGSVYFKFDDIVLLTEGKLV--YAGPA 194 (551)
Q Consensus 159 -g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv--~~G~~ 194 (551)
|.++|++||++. .+...+|++.++ +|++. +.|++
T Consensus 901 ~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 901 IKCRTLFSTHYHS-LVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp SCCEEEEECCCHH-HHHHTSSCSSEE-EEEEEEC-----
T ss_pred CCCEEEEEeCCHH-HHHHhCCcceee-cCeEEEEEecCc
Confidence 899999999964 566778998886 58887 45544
No 96
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.56 E-value=8.5e-15 Score=137.10 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=68.1
Q ss_pred cCCCCChHHhHHHHHHHHHhh----CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEE
Q 008843 106 KVRGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV 181 (551)
Q Consensus 106 ~~~~LSGGerqRvsIa~~L~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~ 181 (551)
.+..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++++ +.++|+++|++ .....+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 467899999999999999974 4699999999999999999999999999875 46899999985 4667899998
Q ss_pred EEc--CCe
Q 008843 182 LLT--EGK 187 (551)
Q Consensus 182 lL~--~G~ 187 (551)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 763 553
No 97
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=2.8e-16 Score=172.17 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=99.1
Q ss_pred CCCCCCcHHHHHHH--HHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNV--LAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~--L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++ ++|..+++ +|.|+++|++.... .+.+||++|+....+. +.+ .....
T Consensus 45 ~G~nGsGKSTL~~~~ll~Gl~~~~-----~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~------l~~---~~~~~ 110 (525)
T 1tf7_A 45 SGTSGTGKTLFSIQFLYNGIIEFD-----EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK------LFI---LDASP 110 (525)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS------EEE---EECCC
T ss_pred EcCCCCCHHHHHHHHHHHHHHhCC-----CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc------EEE---EecCc
Confidence 59999999999999 78998766 79999999874221 2458999997542111 100 00000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC-----CCCHHHHHHHH
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT-----GLDAFQAEKVM 149 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPts-----GLD~~~~~~i~ 149 (551)
. +...++++.++|.+.. ++.++.|||| +|+++++||||+ +||+..+..+.
T Consensus 111 --~-----~~~~~~l~~~~l~~~~-----~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~ 165 (525)
T 1tf7_A 111 --D-----PEGQEVVGGFDLSALI-----ERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELF 165 (525)
T ss_dssp --C-----SSCCSCCSSHHHHHHH-----HHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHH
T ss_pred --c-----cchhhhhcccCHHHHH-----HHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHH
Confidence 0 0001122222222111 1123345655 477999999998 56999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCchh--------HHhhcccEEEEcCC
Q 008843 150 EALRQLAQDGHTVICSIHQPRGS--------VYFKFDDIVLLTEG 186 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~~~~~--------i~~~~D~v~lL~~G 186 (551)
++++++++.|.|||+++|++... ...++|+|++|++|
T Consensus 166 ~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 166 RLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp HHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 99999998899999999998643 45569999999883
No 98
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.55 E-value=5.1e-15 Score=161.82 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=71.4
Q ss_pred cCCCC-ChHHhHHHHHHHHHhhCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEE
Q 008843 106 KVRGI-SGGEKKRLSLACELIASP--SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182 (551)
Q Consensus 106 ~~~~L-SGGerqRvsIa~~L~~~p--~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~l 182 (551)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |.|||++||+|. +...+|++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 46777 999999999999999999 99999999999999999999999999987 899999999975 3456999999
Q ss_pred EcCC
Q 008843 183 LTEG 186 (551)
Q Consensus 183 L~~G 186 (551)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 99
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.55 E-value=3.3e-17 Score=155.81 Aligned_cols=150 Identities=22% Similarity=0.202 Sum_probs=97.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|.++ + +| |.++|..... ..+++||++|+. ... ++++ +++..
T Consensus 7 ~G~nG~GKTTll~~l~g~~~-~-----~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~----- 66 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEVLK-S-----SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL----- 66 (189)
T ss_dssp ESCCSSCHHHHHHHHHHHHH-H-----TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-----
T ss_pred ECCCCChHHHHHHHHHhhcc-c-----CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-----
Confidence 59999999999999999987 5 46 6677765432 245699999975 111 1111 11110
Q ss_pred HHHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHH-HHHH---HHhhCCceEEEeC--CCCCCCHHHHHHHHH
Q 008843 78 VEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRL-SLAC---ELIASPSVIYADE--PTTGLDAFQAEKVME 150 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv-sIa~---~L~~~p~illLDE--PtsGLD~~~~~~i~~ 150 (551)
+..+ ..+..++ ++...+|||||+++ ++++ |++.+|+++++|| |+..+|.... +
T Consensus 67 ---------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~----~ 126 (189)
T 2i3b_A 67 ---------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI----Q 126 (189)
T ss_dssp ---------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH----H
T ss_pred ---------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH----H
Confidence 0000 0111233 24557999999998 4444 5789999999999 8988988654 4
Q ss_pred HHHHHHhCCCEEEE---E-ecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 151 ALRQLAQDGHTVIC---S-IHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 151 ~L~~la~~g~tvi~---~-~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
.|+++.+...++|+ + +|+.+ ..+.|+|..+.+|+++...+
T Consensus 127 ~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~~ 170 (189)
T 2i3b_A 127 AVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVTK 170 (189)
T ss_dssp HHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECCS
T ss_pred HHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeCh
Confidence 44554444555553 2 28753 24578888889999987543
No 100
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.55 E-value=1.2e-16 Score=165.87 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=109.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc------------ccceEEEEccCCCCCCCCCHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------------KAYKFAYVRQEDLFFSQLTVRETLSLAA 68 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~ 68 (551)
+||||||||||+++|+|..+++ .|.+.+.|++..+ ..+.+.++.|.+. ...+.+....
T Consensus 77 iG~nGaGKTTLl~~I~g~~~~~-----~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~ 146 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGASAD-----IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAF 146 (347)
T ss_dssp EECTTSSHHHHHHHHHHHSCCS-----EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHH
Confidence 5999999999999999999887 7999998865211 1134677777542 2222221110
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH
Q 008843 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (551)
Q Consensus 69 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i 148 (551)
.. ..+.+.....+ .|...--+.+..+|+|| ||+++| +.+|++ |+|||+....++
T Consensus 147 ~~------------~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l 200 (347)
T 2obl_A 147 TA------------TTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSL 200 (347)
T ss_dssp HH------------HHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHH
T ss_pred HH------------HHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHH
Confidence 00 00111111111 01000012467899999 899999 688877 999999999999
Q ss_pred HHHHHHHHh--CCC-----EEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 149 MEALRQLAQ--DGH-----TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 149 ~~~L~~la~--~g~-----tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.++++++.+ .|. ||++++||.+ ...+|++.++.+|+++..|+.++
T Consensus 201 ~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 201 PKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp HHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred HHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHH
Confidence 999999874 577 8999999986 45689999999999999887665
No 101
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.55 E-value=1.3e-15 Score=152.05 Aligned_cols=117 Identities=24% Similarity=0.328 Sum_probs=83.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|.+++. .+|+|.++|.++. |++|+..-+ . +.
T Consensus 31 ~Gp~GsGKSTll~~l~g~~~~~----~~G~I~~~g~~i~-------~~~~~~~~~--------------v--~q------ 77 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMIDYINQT----KSYHIITIEDPIE-------YVFKHKKSI--------------V--NQ------ 77 (261)
T ss_dssp ECSTTCSHHHHHHHHHHHHHHH----CCCEEEEEESSCC-------SCCCCSSSE--------------E--EE------
T ss_pred ECCCCccHHHHHHHHHHhCCCC----CCCEEEEcCCcce-------eecCCccee--------------e--eH------
Confidence 5999999999999999998653 1699999887653 333321100 0 00
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
+.+|+.. ..+ |++||++|..+|+++++|||| |+.+...++ +. ++.|.
T Consensus 78 ---------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~ 124 (261)
T 2eyu_A 78 ---------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGH 124 (261)
T ss_dssp ---------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTC
T ss_pred ---------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCC
Confidence 0233311 122 899999999999999999999 988866544 33 45699
Q ss_pred EEEEEecCCchhHHhhcccEEEEcC
Q 008843 161 TVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 161 tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
+|++++|+++ ....+||++.|..
T Consensus 125 ~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 125 LVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp EEEEEECCSS--HHHHHHHHHHTSC
T ss_pred EEEEEeCcch--HHHHHHHHhhhcC
Confidence 9999999964 5677899888753
No 102
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.54 E-value=3.5e-17 Score=166.87 Aligned_cols=140 Identities=15% Similarity=0.127 Sum_probs=80.9
Q ss_pred CCCCCCcHHHHHHHHHcC-cCCCCCcceeeEEEECCEeCCcc--cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQ-LMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~-~~~~~~~~~~G~i~i~g~~~~~~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+|.|+|. ..+. +| +.++|.+.... ...+++++|++.....+|+.|+..++.....
T Consensus 24 vG~nG~GKSTLl~~L~g~~~~~~-----~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~----- 92 (301)
T 2qnr_A 24 VGESGLGKSTLINSLFLTDLYPE-----RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC----- 92 (301)
T ss_dssp EEETTSSHHHHHHHHHC------------------------------CEEEEC---CCEEEEEEEEC-------------
T ss_pred ECCCCCCHHHHHHHHhCCCccCC-----CC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCc-----
Confidence 599999999999999997 5554 67 77777765432 2347999999888888999999877543210
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT-GLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPts-GLD~~~~~~i~~~L~~la 156 (551)
.+..+..++.+.+.+ +.+.+++|||||||+.+|++++ ++++||||+ |||+... +.++++.
T Consensus 93 ~e~~~~l~~~l~~~~-----------~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~ 153 (301)
T 2qnr_A 93 RDCFKTIISYIDEQF-----------ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIH 153 (301)
T ss_dssp ---CTTHHHHHHHHH-----------HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHH
Confidence 000011122221111 2346789999999999888875 999999998 5999873 5666665
Q ss_pred hC-CCEEEEEecCCc
Q 008843 157 QD-GHTVICSIHQPR 170 (551)
Q Consensus 157 ~~-g~tvi~~~H~~~ 170 (551)
++ +.++|++.||..
T Consensus 154 ~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 154 NKVNIVPVIAKADTL 168 (301)
T ss_dssp TTSCEEEEECCGGGS
T ss_pred hcCCEEEEEEeCCCC
Confidence 43 779999999964
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.53 E-value=1.1e-15 Score=173.33 Aligned_cols=130 Identities=20% Similarity=0.195 Sum_probs=90.4
Q ss_pred CCCCCCcHHHHHHHHHcCcC-CCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLM-ASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~-~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||||+|+|... +. .|.+. ......+++++| +++.+++.|++.
T Consensus 582 ~GpNGsGKSTlLr~iagl~~~~~-----~G~~v------pa~~~~i~~v~~---i~~~~~~~d~l~-------------- 633 (765)
T 1ewq_A 582 TGPNMAGKSTFLRQTALIALLAQ-----VGSFV------PAEEAHLPLFDG---IYTRIGASDDLA-------------- 633 (765)
T ss_dssp ESCSSSSHHHHHHHHHHHHHHHT-----TTCCB------SSSEEEECCCSE---EEEECCC-------------------
T ss_pred ECCCCCChHHHHHHHHhhhhhcc-----cCcee------ehhccceeeHHH---hhccCCHHHHHH--------------
Confidence 59999999999999999863 33 34321 122345777776 455556555431
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHH--hhCCceEEEeCC---CCCCCHHHH-HHHHHHHH
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACEL--IASPSVIYADEP---TTGLDAFQA-EKVMEALR 153 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L--~~~p~illLDEP---tsGLD~~~~-~~i~~~L~ 153 (551)
.++|+|+++++.+++++ +++|++++|||| |++||..+. ..+++.|+
T Consensus 634 ----------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~ 685 (765)
T 1ewq_A 634 ----------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH 685 (765)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred ----------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHH
Confidence 14789999999999999 999999999999 999998875 56888776
Q ss_pred HHHhCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 154 ~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
+ .|.|+|++||++. ...++ .-.+.++++.....
T Consensus 686 ~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 686 E---RRAYTLFATHYFE--LTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp H---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEECC
T ss_pred h---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEEEc
Confidence 6 5899999999953 33333 12234455554443
No 104
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.53 E-value=7.5e-15 Score=152.90 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=76.8
Q ss_pred CCcCC-CCChHHhHHHHHHHHHh---------hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhH
Q 008843 104 DAKVR-GISGGEKKRLSLACELI---------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173 (551)
Q Consensus 104 ~~~~~-~LSGGerqRvsIa~~L~---------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i 173 (551)
+..++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. . .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence 44566 79999999999999999 8999999999999999999999999998874 699999994 3 2
Q ss_pred HhhcccEEEEcCCeEEEecCCCC
Q 008843 174 YFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 174 ~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+|+++++++|+++..|++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~ 353 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEM 353 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTT
T ss_pred --cCCEEEEEECCEEEecCCHHH
Confidence 789999999999999999877
No 105
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.52 E-value=3.4e-16 Score=154.50 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=91.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|.+ |.+.++ ...+.++|++|++ +++.+|+.|++.+........ .....
T Consensus 31 ~G~~GsGKSTl~k~L~~~l---------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~-~~~~~ 94 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIMELL---------GQNEVE-----QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFD-HPDAF 94 (245)
T ss_dssp ECSTTSSHHHHHHHHHHHH---------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTT-SGGGB
T ss_pred ECCCCCCHHHHHHHHHHHh---------chhccc-----ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCC-Ccccc
Confidence 4999999999999999975 222222 2345699999985 778899999987754321110 01111
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (551)
..+.+.+.++.+ .+.. +..+..+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.
T Consensus 95 ~~~~~~~~L~~l--~~~~-----~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~ 156 (245)
T 2jeo_A 95 DNDLMHRTLKNI--VEGK-----TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHL 156 (245)
T ss_dssp CHHHHHHHHHHH--HTTC-----CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSE
T ss_pred cHHHHHHHHHHH--HCCC-----CeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCe
Confidence 123344455543 2222 23467899999999988 5788899999999998888753 2222 378
Q ss_pred EEEEEecCC
Q 008843 161 TVICSIHQP 169 (551)
Q Consensus 161 tvi~~~H~~ 169 (551)
+|++++|+.
T Consensus 157 ~i~v~th~~ 165 (245)
T 2jeo_A 157 RLFVDTDSD 165 (245)
T ss_dssp EEEEECCHH
T ss_pred EEEEECCHH
Confidence 999999974
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.52 E-value=4.5e-16 Score=161.90 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=90.2
Q ss_pred CCCCCCcHHHHHHHHHcCc--CCCCCcceeeE-EEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGL-LEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~--~~~~~~~~~G~-i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||++.|++.. +++.+ ...|. |++++.+.. ...++++++|+..+++. ++.||+.+... .
T Consensus 137 ~G~~GsGKTTL~~~l~~~~~~~~~~G-g~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~v~~ni~~~~~------~- 206 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVMVQLPPEEG-GLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYVARA------F- 206 (349)
T ss_dssp EESTTSSHHHHHHHHHHHTTSCGGGT-SCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-HHGGGEEEEEC------C-
T ss_pred ECCCCCCHHHHHHHHHHHhccchhcC-CCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-HHhhCEEEEec------C-
Confidence 4999999999999999987 43310 12367 788876542 12345666666544433 44444322110 0
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHh-------hCCceEEEeCCCCCCCHHH------
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-------ASPSVIYADEPTTGLDAFQ------ 144 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~-------~~p~illLDEPtsGLD~~~------ 144 (551)
-|++++|++.++++++ .+|+++++||||+++|+..
T Consensus 207 --------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~ 254 (349)
T 1pzn_A 207 --------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 254 (349)
T ss_dssp --------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTH
T ss_pred --------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccH
Confidence 1345566666666666 6899999999999999852
Q ss_pred ------HHHHHHHHHHHHh-CCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecC
Q 008843 145 ------AEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 145 ------~~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
..++++.|+++++ .|.|||+++|... .....++.......|+++.++.
T Consensus 255 ~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 255 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 4567777788775 5899999999854 4444455666677787776554
No 107
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.49 E-value=4.3e-14 Score=142.05 Aligned_cols=141 Identities=17% Similarity=0.141 Sum_probs=95.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||++.+++.... |++ +.|.+... ..++.|+..++.. ..+.+.+. .+.. ....
T Consensus 36 ~G~~GsGKTtl~~~l~~~~~~-------g~~-~~g~~~~~-~~~v~~~~~e~~~---~~~~~r~~---~~g~--~~~~-- 96 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAAQIAG-------GPD-LLEVGELP-TGPVIYLPAEDPP---TAIHHRLH---ALGA--HLSA-- 96 (279)
T ss_dssp EESTTSSHHHHHHHHHHHHHT-------CCC-TTCCCCCC-CCCEEEEESSSCH---HHHHHHHH---HHHT--TSCH--
T ss_pred EcCCCCCHHHHHHHHHHHHhc-------CCC-cCCCccCC-CccEEEEECCCCH---HHHHHHHH---HHHh--hcCh--
Confidence 499999999999999986542 333 23443321 2357888776532 01111211 1111 1111
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC--CCCHHHH---HHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT--GLDAFQA---EKVMEALRQL 155 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPts--GLD~~~~---~~i~~~L~~l 155 (551)
...+++++.+++.+..+ ..+..||+||++++ ++++.+|+++++||||+ ++|.... .++++.|+++
T Consensus 97 --~~~~~~~~~l~l~~~~~-----~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l 166 (279)
T 1nlf_A 97 --EERQAVADGLLIQPLIG-----SLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAI 166 (279)
T ss_dssp --HHHHHHHHHEEECCCTT-----SCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHH
T ss_pred --hhhhhccCceEEeecCC-----CCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHH
Confidence 23566788888865443 35678999998875 68889999999999999 9998544 8888999998
Q ss_pred H-hCCCEEEEEecCCc
Q 008843 156 A-QDGHTVICSIHQPR 170 (551)
Q Consensus 156 a-~~g~tvi~~~H~~~ 170 (551)
+ +.|+|||+++|+..
T Consensus 167 ~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 167 AADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHCCEEEEEEEC--
T ss_pred HHHcCCEEEEEecCCC
Confidence 7 56999999999853
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.47 E-value=9.7e-15 Score=152.00 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=48.1
Q ss_pred HHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcCC
Q 008843 119 SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEG 186 (551)
Q Consensus 119 sIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 186 (551)
+||++|..+|+++++|||| |..+ .+.+.++++.|++|++++|+.+ .+ ..+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 8999999999999999999 6554 4444555778999999999975 34 678999988654
No 109
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.47 E-value=6.3e-15 Score=167.95 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=94.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||||+|+|...... .| ..+.....+++++.| +++.+++.|++...
T Consensus 613 tGpNGsGKSTlLr~iagl~~~~q----~G------~~vpa~~~~i~~~~~---i~~~~~~~d~l~~~------------- 666 (800)
T 1wb9_A 613 TGPNMGGKSTYMRQTALIALMAY----IG------SYVPAQKVEIGPIDR---IFTRVGAADDLASG------------- 666 (800)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHHT----TT------CCBSSSEEEECCCCE---EEEEEC---------------------
T ss_pred ECCCCCChHHHHHHHHHHHHHHh----cC------cccchhcccceeHHH---HHhhCCHHHHHHhh-------------
Confidence 59999999999999999743210 12 112222234666655 45555665554221
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHH-HHHHHHHHh-C
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQ-D 158 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~-~ 158 (551)
.+.+|+|++ +++.+...+++|++++||||++|+|+.....+ .+.++.+++ .
T Consensus 667 --------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~ 719 (800)
T 1wb9_A 667 --------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI 719 (800)
T ss_dssp -----------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT
T ss_pred --------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc
Confidence 113566665 45555567899999999999999999888776 788888887 4
Q ss_pred CCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 159 g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
|.++|++||++. ...++|++..+.+|++.+....++
T Consensus 720 g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~~~~ 755 (800)
T 1wb9_A 720 KALTLFATHYFE--LTQLPEKMEGVANVHLDALEHGDT 755 (800)
T ss_dssp CCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEETTE
T ss_pred CCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEcCCc
Confidence 999999999964 456789888888888877655443
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.46 E-value=6.7e-15 Score=142.34 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=65.3
Q ss_pred CCChHHhHHHHHHHHHhhCCc--eEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hhHHhh
Q 008843 109 GISGGEKKRLSLACELIASPS--VIYADEPTTGL--DAFQAEKVMEALRQLAQ-DGHTVICSIHQPR-------GSVYFK 176 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~~~p~--illLDEPtsGL--D~~~~~~i~~~L~~la~-~g~tvi~~~H~~~-------~~i~~~ 176 (551)
..|.+|.++...+.....+|+ ++++||||+++ |+....++++.|+++++ .|.|||+++|+.. ..+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 459999998888887788999 99999999887 99999999999999974 5899999999973 347888
Q ss_pred cccEEEEcCC
Q 008843 177 FDDIVLLTEG 186 (551)
Q Consensus 177 ~D~v~lL~~G 186 (551)
+|++++|++.
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
No 111
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.45 E-value=7.1e-14 Score=160.86 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=60.7
Q ss_pred CCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCCchhHHhhcccE
Q 008843 107 VRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQ-DGHTVICSIHQPRGSVYFKFDDI 180 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~-~~L~~la~-~g~tvi~~~H~~~~~i~~~~D~v 180 (551)
.+.+|+|++|++.|+++ +++|+++||||||+|||+.....+. .+++.+++ .|.|+|++||++. +..++|+.
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 34689999999999998 8999999999999999999999997 78888875 6999999999963 44556654
No 112
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.43 E-value=3.2e-13 Score=141.43 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=67.7
Q ss_pred CcCCCCChHHhHHH------HHHHHHhhC-CceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhc
Q 008843 105 AKVRGISGGEKKRL------SLACELIAS-PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177 (551)
Q Consensus 105 ~~~~~LSGGerqRv------sIa~~L~~~-p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~ 177 (551)
.+++.||||||||+ ++|++|+.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence 45678999999988 567888999 999999999999999999999999999753 569999999974 56789
Q ss_pred ccEEEEc
Q 008843 178 DDIVLLT 184 (551)
Q Consensus 178 D~v~lL~ 184 (551)
|++++++
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999996
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.43 E-value=7.8e-17 Score=152.22 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=107.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|++. . +|.+.++|.+.... ...++++|.....+..|+.+++.+.+.....
T Consensus 8 ~G~~GaGKSTl~~~L~~~---~-----~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 71 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAAQ---L-----DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLL------- 71 (189)
T ss_dssp ECSTTSSHHHHHHHHHHH---S-----SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred ECCCCCcHHHHHHHHhcc---c-----CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHh-------
Confidence 599999999999999982 2 57888988765332 2356777766555556788887765432100
Q ss_pred HHHHHHHHHHHcCCCcccCccccC---CcCCCC--ChHHhHHHHHHH------HHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGD---AKVRGI--SGGEKKRLSLAC------ELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SGGerqRvsIa~------~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
-+-....+...+. +..+.+ |+|++|++.++. +++.+|+...+|| |||+..... .
T Consensus 72 -----------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 72 -----------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp -----------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred -----------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 0000000100000 111234 889998988888 9999999888884 899988888 8
Q ss_pred HHHHHHHhCCCEEEEEecC-CchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 150 EALRQLAQDGHTVICSIHQ-PRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~-~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
+.++.+.+.+.++|.++|+ +. ++...+|+|+ ++|+++..|+++.
T Consensus 137 ~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 137 EEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp HHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC-----
T ss_pred HHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCc
Confidence 8888887667899999998 64 6788899999 9999999998865
No 114
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.34 E-value=1.2e-16 Score=164.16 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=94.4
Q ss_pred CCCCCCcHHHHHHHHHcCc--------CCCCCcceeeEEEECCEeCCccc--------------------ceEEEE---c
Q 008843 1 MGPSGSGKTTLLNVLAGQL--------MASPRLHLSGLLEVNGKPSSNKA--------------------YKFAYV---R 49 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~--------~~~~~~~~~G~i~i~g~~~~~~~--------------------~~i~yv---~ 49 (551)
+|+||||||||||.|.|.. .++ .|+|.++|.++.... ..++++ +
T Consensus 10 ~G~~GaGKTTll~~l~~~~~~~~~aVi~~d-----~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNEQHGYKIAVIENE-----FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EESSSSSCHHHHHHHHHSCCCCCEEEECSS-----CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHhhcCCCcEEEEEec-----CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 4999999999999999986 344 688888888764321 125566 5
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhh
Q 008843 50 QEDLFFSQLTVRETLSLAAELQLPEIL---SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA 126 (551)
Q Consensus 50 Q~~~l~~~lTV~e~l~~~~~l~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~ 126 (551)
|+..+++..+|.|+..++......... .......+++.++..+++.+..+. ..++|+||+||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~------~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ------MNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHH------HHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHH------HhhchHHHHHHHhCCEEEEE
Confidence 666656667777766542100000000 000000111223333444333322 12689999999998898889
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 008843 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~ 170 (551)
+|+++ ||| .++.+.|+++. .+.+|++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 77888888875 5889999999864
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.34 E-value=5.2e-13 Score=128.20 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=60.2
Q ss_pred CChHH--hHHHHHHHHHhhC-CceEEEeCCCCCCCHHH--------HHHHHHHHHHHHh-CCCEEEEEecCCch------
Q 008843 110 ISGGE--KKRLSLACELIAS-PSVIYADEPTTGLDAFQ--------AEKVMEALRQLAQ-DGHTVICSIHQPRG------ 171 (551)
Q Consensus 110 LSGGe--rqRvsIa~~L~~~-p~illLDEPtsGLD~~~--------~~~i~~~L~~la~-~g~tvi~~~H~~~~------ 171 (551)
.|+++ ++++..+++++.+ |+++++||||+++|+.. ..++++.|+++++ .|.|||+++|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 44553 5688888999986 99999999999999743 3456677888875 48999999998542
Q ss_pred ------hHHhhcccEEEEcCC
Q 008843 172 ------SVYFKFDDIVLLTEG 186 (551)
Q Consensus 172 ------~i~~~~D~v~lL~~G 186 (551)
.+...+|++++|++.
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 467789999999654
No 116
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.34 E-value=1.8e-12 Score=138.34 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=68.7
Q ss_pred CCCCChHHhHHHHHHHHHh----hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEE
Q 008843 107 VRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~l 182 (551)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++ .....+|+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 4469999999999999999 58999999999999999999999999999876688999999995 45677999999
Q ss_pred Ec
Q 008843 183 LT 184 (551)
Q Consensus 183 L~ 184 (551)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 117
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=5.1e-14 Score=149.39 Aligned_cols=137 Identities=18% Similarity=0.146 Sum_probs=79.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+|+|+|...+..+ .|.+.+++.+ +.....+++++|++.+++.+||.||+.+..... ..+
T Consensus 37 vG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~ 106 (418)
T 2qag_C 37 VGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSN 106 (418)
T ss_dssp ECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC------CEEEEEEECC----------------
T ss_pred ECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chh
Confidence 699999999999999998764321 2222222211 111245899999998888999999988764321 011
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCc---eEEEeCCC-CCCCHHHHHHHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS---VIYADEPT-TGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~---illLDEPt-sGLD~~~~~~i~~~L~~la 156 (551)
..+.+.+.++ ..++.+++||++||++++.+|+ ++++|||| .|||+... +.++.+.
T Consensus 107 ~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~ 165 (418)
T 2qag_C 107 CWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH 165 (418)
T ss_dssp -CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT
T ss_pred hHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh
Confidence 1111111111 1356677889999999999999 99999999 69998873 4455554
Q ss_pred hCCCEEEEEecCC
Q 008843 157 QDGHTVICSIHQP 169 (551)
Q Consensus 157 ~~g~tvi~~~H~~ 169 (551)
. +.++|+++|..
T Consensus 166 ~-~v~iIlVinK~ 177 (418)
T 2qag_C 166 E-KVNIIPLIAKA 177 (418)
T ss_dssp T-TSEEEEEEEST
T ss_pred c-cCcEEEEEEcc
Confidence 3 77888888763
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.31 E-value=3.7e-14 Score=137.84 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=85.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCH----HHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTV----RETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV----~e~l~~~~~l~~~~~ 75 (551)
+||||||||||+|+|+|..+|+ ...|.|.+++++.... ...++|++|+...|+.+++ .|++.+....
T Consensus 22 ~GpsGsGKSTLlk~L~g~~~p~---~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~----- 93 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKTQPLY---DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY----- 93 (219)
T ss_dssp ECCTTSCHHHHHHHHHHHSCTT---TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE-----
T ss_pred ECCCCCCHHHHHHHHhccCCCC---ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc-----
Confidence 5999999999999999998752 2488999988765433 3458999998766555444 2322211100
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
.+.| +++ +.+++..+++++|| ||+..+.++.+.+.
T Consensus 94 --------------------------------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-- 128 (219)
T 1s96_A 94 --------------------------------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-- 128 (219)
T ss_dssp --------------------------------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT--
T ss_pred --------------------------------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc--
Confidence 0111 111 33445567999999 99999999999876
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEEEEcCC
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEG 186 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 186 (551)
++.||++++|++. ++.. |+ +.+|
T Consensus 129 --~~~tI~i~th~~~-~l~~---Rl--~~rG 151 (219)
T 1s96_A 129 --HARSIFILPPSKI-ELDR---RL--RGRG 151 (219)
T ss_dssp --TCEEEEEECSSHH-HHHH---HH--HTTS
T ss_pred --CCEEEEEECCCHH-HHHH---HH--HHcC
Confidence 5899999999964 3332 43 6666
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.30 E-value=1.3e-15 Score=150.28 Aligned_cols=144 Identities=22% Similarity=0.229 Sum_probs=94.2
Q ss_pred CCCCCCcHHHHHHHHH---cCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcC--CC-
Q 008843 1 MGPSGSGKTTLLNVLA---GQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQ--LP- 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~---g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~--~~- 73 (551)
+||||||||||+++|+ |...++ .|++.++|.+.... ...+.+++|+..+++..|+.|++....... ..
T Consensus 33 ~G~~GsGKSTl~k~La~~lg~~~~~-----~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~ 107 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIAQNFGLQHLS-----SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHW 107 (246)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCCCEE-----HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCE
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEec-----HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Confidence 5999999999999999 987765 67777776543211 223556778888888889999998754210 00
Q ss_pred --CCCCHHHHHHHHHHHHH--HcCCCccc-------CccccCCcCCCCChHHhHHHHHHHHH-hhCCceEEEe----CCC
Q 008843 74 --EILSVEERDEYVNSLLF--KLGLVSCA-------DSNVGDAKVRGISGGEKKRLSLACEL-IASPSVIYAD----EPT 137 (551)
Q Consensus 74 --~~~~~~~~~~~v~~~l~--~lgL~~~~-------~~~vg~~~~~~LSGGerqRvsIa~~L-~~~p~illLD----EPt 137 (551)
....... ..++.+.+ .+++.-.. -..+.++.+..||| |+ +++ +.+|+++++| |||
T Consensus 108 il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 108 LLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp EEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred EEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence 0011111 11222221 12200000 01223445678999 55 677 9999999999 999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC
Q 008843 138 TGLDAFQAEKVMEALRQLAQD 158 (551)
Q Consensus 138 sGLD~~~~~~i~~~L~~la~~ 158 (551)
+|||..+...+.+.++++.++
T Consensus 179 ~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp BCCGGGSHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999988765
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.29 E-value=5.2e-15 Score=139.53 Aligned_cols=132 Identities=12% Similarity=0.042 Sum_probs=82.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+++|+|. ++ .|.|.++|.+... ....++|++|+.. +.+||.|++.+.+........
T Consensus 15 ~G~~GsGKSTl~~~La~~--~~-----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~- 84 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANL--PG-----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGY- 84 (191)
T ss_dssp EECTTSCHHHHHHHHHTC--SS-----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSC-
T ss_pred ECCCCCCHHHHHHHHHhc--cC-----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCC-
Confidence 599999999999999998 33 6889999876422 1223577777644 457888988765432100000
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
...++.+++..++....+ . +..+..+|+|++||+.++|++.++|+++ +|+.....+.+.++.+..
T Consensus 85 ----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 85 ----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp ----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred ----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 000011111111111110 0 1234579999999999999999999876 688777777776665543
No 121
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.29 E-value=1e-12 Score=136.41 Aligned_cols=123 Identities=23% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCCCCCcHHHHHHHHHcCcC-CCCCcceeeEEEEC-CEeCCc-ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM-ASPRLHLSGLLEVN-GKPSSN-KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~-~~~~~~~~G~i~i~-g~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~ 77 (551)
+||||||||||+|+|+|... +. +|+|.++ |..... ....+++++|+..++++.||+|+ . + ...+
T Consensus 221 vG~sG~GKSTLln~L~g~~~~~~-----~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~---~--l---~~l~ 287 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQNEIL-----TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF---G--L---WHLE 287 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCSSCCC-----CC-------------CCCEEEECTTSCEEEECHHHHTC---C--C---CCCC
T ss_pred ECCCCccHHHHHHHHhccccccc-----cCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh---h--h---cCCC
Confidence 59999999999999999987 76 7999887 765432 23568999999999999999884 1 1 1245
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
.++..+++.++++.+|+.+..| ....++| ||+||++||+++ ++..-.....++++++.+
T Consensus 288 ~~e~~~~~~e~l~~~gl~~f~~-----~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 288 PEQITQGFVEFHDYLGHCKYRD-----CKHDADP-GCAIREAVENGA---------------IAETRFENYHRILESMAQ 346 (358)
T ss_dssp HHHHHHTSGGGGGGTTCSSSTT-----CCSSSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCCchhcC-----CCcccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHHHHHh
Confidence 5666777889999999965554 4566899 999999999864 333444445566666643
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.28 E-value=1.2e-15 Score=159.55 Aligned_cols=84 Identities=10% Similarity=-0.097 Sum_probs=60.0
Q ss_pred CCChHHhHHHHHHHHHh-hCCceEEEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchhHHhhc
Q 008843 109 GISGGEKKRLSLACELI-ASPSVIYADE---PT------TGLDAFQAEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKF 177 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~-~~p~illLDE---Pt------sGLD~~~~~~i~~~L~~la~-~g~tvi~~~H~~~~~i~~~~ 177 (551)
.+|+|++||..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+ .|.++++++|. . ....++
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHH
Confidence 46777788888888775 5999999999 65 58999999999999999864 48899999874 2 556667
Q ss_pred ccEEEEcCCeEEEecCCCC
Q 008843 178 DDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 178 D~v~lL~~G~iv~~G~~~~ 196 (551)
|++.++++ ++..+.+++
T Consensus 336 ~~i~~i~~--~l~~~~~~~ 352 (365)
T 1lw7_A 336 QVKAVIEK--VLNEEEISE 352 (365)
T ss_dssp HHHHHHHH--HTSCCCCSS
T ss_pred HHHHHHHH--HhcccchhH
Confidence 77777654 444444554
No 123
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.25 E-value=8.8e-14 Score=132.67 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCcccCccccCCcCCCCChHHhHH-HHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 008843 84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR-LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT 161 (551)
Q Consensus 84 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR-vsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~t 161 (551)
.+.+.++..++... .++ .+...+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 128 ~~~~~~~~~~~~~~---~v~-nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 128 QMIEWAVDSNIAVL---VLL-TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHTTCCEE---EEE-ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCeE---EEE-ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 45556666666321 122 2456799999999 89999999999999999999999999999999999998766543
No 124
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.23 E-value=4.6e-14 Score=131.93 Aligned_cols=133 Identities=21% Similarity=0.251 Sum_probs=82.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------c-ceEE----EEccCCCCCCCCCHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------A-YKFA----YVRQEDLFFSQLTVRETLSLA 67 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------~-~~i~----yv~Q~~~l~~~lTV~e~l~~~ 67 (551)
+|+||||||||++.|+|.+++.+ ...|.|.++|.++... + +.+| +++|+..+| ++|
T Consensus 8 vG~SGsGKSTL~~~L~~~~~~~g--~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~----- 76 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMPILRERG--LRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR----- 76 (171)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTT--CCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE-----
T ss_pred ECCCCCCHHHHHHHHHHHhhhcC--CceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec-----
Confidence 59999999999999999987641 2269999999873221 1 2356 888887655 111
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHH-cCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceE-------EEeCCCCC
Q 008843 68 AELQLPEILSVEERDEYVNSLLFK-LGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVI-------YADEPTTG 139 (551)
Q Consensus 68 ~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~il-------lLDEPtsG 139 (551)
. .. +....++++++. +. -.|+.+++ +||||||||++|||+++.+|++. .-|.|..+
T Consensus 77 -----~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~ 140 (171)
T 2f1r_A 77 -----V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDG 140 (171)
T ss_dssp -----C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSS
T ss_pred -----C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCccc
Confidence 0 01 111134455555 43 24788876 59999999999999999999873 23555322
Q ss_pred ---CCHHHHHHHHHHHHHHHhCCC
Q 008843 140 ---LDAFQAEKVMEALRQLAQDGH 160 (551)
Q Consensus 140 ---LD~~~~~~i~~~L~~la~~g~ 160 (551)
+|......+.+.+.+...+|.
T Consensus 141 ~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 141 HKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SCEECTTCHHHHHHHHHHHHTC--
T ss_pred CcccCcccHHHHHHHHHHHHhccC
Confidence 344556777887776666653
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.21 E-value=2.7e-12 Score=134.44 Aligned_cols=115 Identities=27% Similarity=0.336 Sum_probs=82.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~ 79 (551)
+||||||||||+++|+|.+++.. +|+|.+.|.++... +..++||+|..
T Consensus 142 vG~~GsGKTTll~~l~~~~~~~~----~g~I~~~e~~~e~~~~~~~~~v~Q~~--------------------------- 190 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMIDYINQTK----SYHIITIEDPIEYVFKHKKSIVNQRE--------------------------- 190 (372)
T ss_dssp ECSSSSSHHHHHHHHHHHHHHHS----CCEEEEEESSCCSCCCCSSSEEEEEE---------------------------
T ss_pred ECCCCCCHHHHHHHHHhhcCcCC----CcEEEEecccHhhhhccCceEEEeee---------------------------
Confidence 59999999999999999987531 58887766655321 23467787741
Q ss_pred HHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
+|+. ...+ +.+|+++|..+|+++++|||+ |..+... .++. +..|
T Consensus 191 ------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g 234 (372)
T 2ewv_A 191 ------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETG 234 (372)
T ss_dssp ------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTT
T ss_pred ------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcC
Confidence 2221 1123 469999999999999999999 7665443 3433 4568
Q ss_pred CEEEEEecCCchhHHhhcccEEEEc
Q 008843 160 HTVICSIHQPRGSVYFKFDDIVLLT 184 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~v~lL~ 184 (551)
.+|+.++|+.+ +...+||++.|.
T Consensus 235 ~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 235 HLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp CEEEECCCCCS--HHHHHHHHHHTS
T ss_pred CEEEEEECcch--HHHHHHHHHHhc
Confidence 99999999853 667788887663
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=9.6e-12 Score=128.47 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=79.5
Q ss_pred CCCCCCcHHHHHHHHHc-CcCCCCCcceeeEEEECCEeCCcc---cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g-~~~~~~~~~~~G~i~i~g~~~~~~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
.||||+|||||+++|++ +..++ .|++.++|.+.... ...+++++|.+.+.-..+ + . ...
T Consensus 42 ~Gp~G~GKTtl~~~la~~l~~~~-----~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~ 104 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLESIFGPG-----VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GNN 104 (354)
T ss_dssp ECSTTSSHHHHHHTHHHHHSCTT-----CCC------------------CCEECSSEEEECCC----------------C
T ss_pred ECCCCCCHHHHHHHHHHHHcCCC-----CCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CCc
Confidence 49999999999999999 55555 68888888765422 234788888764321100 0 0 001
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
... .+++.++.+.-....+.. . .+|| +..+|+++++|||++ ||..++..+.+.|++..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 233333333211000111 1 4566 788999999999999 99999999999998864
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCCeEEEecCCCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (551)
.+.++|+++|++......+-+| ...+...+++.
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR------~~~~~~~~~~~ 195 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ------CLLIRCPAPSD 195 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT------SEEEECCCCCH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh------ceEEecCCcCH
Confidence 4689999999986432333233 34455555543
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.17 E-value=6.4e-12 Score=122.41 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=48.2
Q ss_pred CChHHhHH-HHHHHHHh--hCCceEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCchh-
Q 008843 110 ISGGEKKR-LSLACELI--ASPSVIYADEPTTGLDAF-------Q-----AEKVMEALRQLAQ-DGHTVICSIHQPRGS- 172 (551)
Q Consensus 110 LSGGerqR-vsIa~~L~--~~p~illLDEPtsGLD~~-------~-----~~~i~~~L~~la~-~g~tvi~~~H~~~~~- 172 (551)
.++.+... +.-+.+++ .+|+++++|||++.+|+. . ..++++.|+++++ .|.|||+++|.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 45554332 33333444 489999999999999975 3 3456777777764 499999999964321
Q ss_pred -----------------HHhhcccEEEEcCC
Q 008843 173 -----------------VYFKFDDIVLLTEG 186 (551)
Q Consensus 173 -----------------i~~~~D~v~lL~~G 186 (551)
+.+.+|++++|++|
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------------------CCTTCEEEEEEEC
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 22378999999765
No 128
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.17 E-value=1.1e-11 Score=115.78 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=43.7
Q ss_pred HhhCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchh
Q 008843 124 LIASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172 (551)
Q Consensus 124 L~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~ 172 (551)
.+.+|++|++|||++ ++|+..+..+.+++.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999985 9999999999999999888899999999998654
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.15 E-value=1.1e-11 Score=113.00 Aligned_cols=47 Identities=6% Similarity=0.110 Sum_probs=38.8
Q ss_pred hhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCchh
Q 008843 125 IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT-VICSIHQPRGS 172 (551)
Q Consensus 125 ~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~t-vi~~~H~~~~~ 172 (551)
+.+|++|++|||++ +|...+..+.+++.++.++|++ +|+++|.+..+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQ 128 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHH
Confidence 45799999999998 6655588899999999888888 89999976543
No 130
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.11 E-value=1.7e-12 Score=132.12 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEE---CCEeCCccc-----ceEEEEccCCCCC-----CCCCHHHHH--H
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV---NGKPSSNKA-----YKFAYVRQEDLFF-----SQLTVRETL--S 65 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i---~g~~~~~~~-----~~i~yv~Q~~~l~-----~~lTV~e~l--~ 65 (551)
+||||||||||+|+|+ ..++. +|+|.+ +|++.+... ..+|||+|++.+. +.+|+ |++ .
T Consensus 171 ~G~sG~GKSTLln~l~-~~~~~-----~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~ 243 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT-GEELR-----TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNY 243 (302)
T ss_dssp ECSTTSSHHHHHHHHH-SCCCC-----CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGG
T ss_pred ECCCCCCHHHHHHHHH-HhhCc-----ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHH
Confidence 5999999999999999 88776 799999 888765431 2479999998653 78899 887 4
Q ss_pred HH----HHcCCCCCCCHHHHHHHHHHHHHHcCCCc-ccCccccCCcCCCCChHHhHHHHHHHH
Q 008843 66 LA----AELQLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACE 123 (551)
Q Consensus 66 ~~----~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRvsIa~~ 123 (551)
|. ..++........+...+++++++.++|.+ .. +.+++.|||.++|++.|||+
T Consensus 244 f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~-----~~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 244 FREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERY-----KSYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp CGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHH-----HHHHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHH-----HHHHHHHHHHHHHHHHHhcc
Confidence 43 10111111112233456889999999964 33 34567899999999999874
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.11 E-value=4.8e-12 Score=130.22 Aligned_cols=133 Identities=15% Similarity=0.080 Sum_probs=90.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cc--eEEEEccCCCCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AY--KFAYVRQEDLFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~--~i~yv~Q~~~l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||++.|+|.+++. +|+|.++|.+.... .+ .+.+++|+..+.|.+||+|++.++..
T Consensus 135 vG~nGaGKTTll~~Lag~l~~~-----~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 135 VGFNGSGKTTTIAKLANWLKNH-----GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhc-----CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 5999999999999999999876 79999999886532 11 25699999999999999999987643
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~ 149 (551)
.... . .+++..|+.+..+ .....|| .+++++..++.+++||.+|. .+++
T Consensus 210 ~~~d----------~--vliDtaG~~~~~~-----~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~ 258 (328)
T 3e70_C 210 RGID----------V--VLIDTAGRSETNR-----NLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIV 258 (328)
T ss_dssp HTCS----------E--EEEEECCSCCTTT-----CHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHH
T ss_pred ccch----------h--hHHhhccchhHHH-----HHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHH
Confidence 2110 0 0122223322111 1122333 38888888888888885443 4566
Q ss_pred HHHHHHH-hCCCEEEEEecCC
Q 008843 150 EALRQLA-QDGHTVICSIHQP 169 (551)
Q Consensus 150 ~~L~~la-~~g~tvi~~~H~~ 169 (551)
+.++.+. +.+.|+|++||..
T Consensus 259 ~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHhcCCCEEEEeCcC
Confidence 6667766 4588999999964
No 132
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.10 E-value=5.8e-12 Score=133.33 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=96.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC--H
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS--V 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~--~ 78 (551)
+||||||||||+|+|+|..- .|... ...........++|++|++.+++.+||.||+.++........+. .
T Consensus 48 vG~nGaGKSTLln~L~G~~l-------~g~~~-~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 48 VGETGLGKSTLMDTLFNTKF-------EGEPA-THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp ECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred ECCCCCCHHHHHHHHhCccc-------cCCcC-CCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 59999999999999999842 22211 11111112345899999999888999999987653211000000 0
Q ss_pred HHHHHHHHHHHHHc-CCCc----ccCccc----c--CCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHH
Q 008843 79 EERDEYVNSLLFKL-GLVS----CADSNV----G--DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 79 ~~~~~~v~~~l~~l-gL~~----~~~~~v----g--~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~ 147 (551)
...++..++.++.. ++.. ..|+.+ . ....++++-.+ +.|+++|..+++++++|||+..|.+.....
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHH
Confidence 11234455566655 5431 122221 0 11124677666 789999999999999999999999999999
Q ss_pred HHHHHHH-HHhCCCEEEEEecC
Q 008843 148 VMEALRQ-LAQDGHTVICSIHQ 168 (551)
Q Consensus 148 i~~~L~~-la~~g~tvi~~~H~ 168 (551)
+.+.+++ +...|..|+.++.+
T Consensus 197 l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHcCCcEEecCCC
Confidence 9999986 87889988888754
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.09 E-value=2.9e-12 Score=129.76 Aligned_cols=121 Identities=19% Similarity=0.202 Sum_probs=80.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHH----cC---CC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE----LQ---LP 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~----l~---~~ 73 (551)
.||||||||||.+.|++.+.+. | . ....+.+|+||+.+++. ++++++.+... +. .|
T Consensus 37 ~G~sGsGKSTla~~L~~~l~~~------g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIYNHLMEK------Y------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHH------H------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCST
T ss_pred ECCCCCCHHHHHHHHHHHhhhc------C------C----CCceEEEeccccccCCh-HHHHHHhccccccchhhhccCc
Confidence 4999999999999999987542 2 0 12335566999988875 88899887631 11 13
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC--cc-cCccccCCcCCCCChHHhHHHHHH--HHHhhCCceEEEeCCCCCCCHHH
Q 008843 74 EILSVEERDEYVNSLLFKLGLV--SC-ADSNVGDAKVRGISGGEKKRLSLA--CELIASPSVIYADEPTTGLDAFQ 144 (551)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~--~~-~~~~vg~~~~~~LSGGerqRvsIa--~~L~~~p~illLDEPtsGLD~~~ 144 (551)
.... .+...+.++.+.-. .. .....-..+.+.+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 100 ~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 100 GTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp TSBC----HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred chhH----HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 2222 23345566666432 00 001111234578999999999987 554 999999999999999864
No 134
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.09 E-value=5.8e-11 Score=123.85 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=82.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeC-Cc--ccceEEEEc-cCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS-SN--KAYKFAYVR-QEDLFFSQLTVRETLSLAAELQLPEIL 76 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~-~~--~~~~i~yv~-Q~~~l~~~lTV~e~l~~~~~l~~~~~~ 76 (551)
+||||||||||+|+|+|..+++ +|.|.++|... .. .+..++|++ |++.+
T Consensus 181 vG~sGsGKSTll~~l~~~~~~~-----~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~---------------------- 233 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQEIPFD-----QRLITIEDVPELFLPDHPNHVHLFYPSEAKE---------------------- 233 (361)
T ss_dssp EESSSSCHHHHHHHHHTTSCTT-----SCEEEEESSSCCCCTTCSSEEEEECC---------------------------
T ss_pred ECCCCCCHHHHHHHHHhcCCCC-----ceEEEECCccccCccccCCEEEEeecCcccc----------------------
Confidence 5999999999999999999886 79999988532 11 234588888 54321
Q ss_pred CHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
+++++...|..|+.++..+|+.+++||++. .++.+.|+.+.
T Consensus 234 --------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~ 274 (361)
T 2gza_A 234 --------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAA 274 (361)
T ss_dssp -------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHH
T ss_pred --------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh
Confidence 012233456667777777899999999985 34556677665
Q ss_pred hCCCEEEEEecCCchhHHhhcccEEEEcCC
Q 008843 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEG 186 (551)
Q Consensus 157 ~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 186 (551)
....|++.++|..+ ....+||+..+..|
T Consensus 275 ~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 275 SGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp TTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred cCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 44458899999854 66778999988765
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.04 E-value=5.2e-12 Score=133.87 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=89.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHH--HHcCCCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLA--AELQLPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~--~~l~~~~~~~~ 78 (551)
+|+|||||||||++|+|..+ .+.+.+.+.....+|+|.+++. ..+++.|+.-+. +.. ...+..
T Consensus 163 VG~~gAGKSTLL~~Lsg~~~-----------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~--~~~L~~ 227 (416)
T 1udx_A 163 VGYPNAGKSSLLAAMTRAHP-----------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASE--GKGLGL 227 (416)
T ss_dssp ECCGGGCHHHHHHHHCSSCC-----------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGG--SCCSCH
T ss_pred ECCCCCcHHHHHHHHHcCCc-----------cccCcccceecceeeEEEecCc--ceEEEEeccccccchhh--hhhhhH
Confidence 59999999999999999742 2334443333334555555430 111111111000 000 001111
Q ss_pred HHH--HHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH-
Q 008843 79 EER--DEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL- 155 (551)
Q Consensus 79 ~~~--~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l- 155 (551)
... .++++.++..+++. +.....+|+||+||+.++++|+.+|.++++ +++|...+ +.++.+++.
T Consensus 228 ~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l 294 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADAL 294 (416)
T ss_dssp HHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHH
Confidence 110 01122233333442 335568999999999999999999999999 99999877 555555444
Q ss_pred HhCCCEEEEEecCCchhHHhhcccEE
Q 008843 156 AQDGHTVICSIHQPRGSVYFKFDDIV 181 (551)
Q Consensus 156 a~~g~tvi~~~H~~~~~i~~~~D~v~ 181 (551)
.+.|.+++.++..-...+..+++.+.
T Consensus 295 ~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 295 AREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp HTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred HhcCCeEEEEECCCccCHHHHHHHHH
Confidence 45577777666544556777766654
No 136
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.00 E-value=1e-12 Score=138.17 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=111.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC----CC---CCcceeeEEEECCEeCCc------ccce---EEEEccCCCCCCCCCHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLM----AS---PRLHLSGLLEVNGKPSSN------KAYK---FAYVRQEDLFFSQLTVRETL 64 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~----~~---~~~~~~G~i~i~g~~~~~------~~~~---i~yv~Q~~~l~~~lTV~e~l 64 (551)
+|+||||||||+|+|+|... +. ..-...|.+.++|..+.. ..+. ..++.+.+.+.+..+..|.+
T Consensus 26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L 105 (392)
T 1ni3_A 26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL 105 (392)
T ss_dssp EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHH
Confidence 59999999999999999321 00 001237999998854311 1122 34778888888888877665
Q ss_pred --HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCC--ceEEEeCCCCCC
Q 008843 65 --SLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--SVIYADEPTTGL 140 (551)
Q Consensus 65 --~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p--~illLDEPtsGL 140 (551)
.|...++. ++.++..++.. ++..+..+||+. +| +++++|||+.++
T Consensus 106 ~~~fl~~ir~------------~d~il~Vvd~~-------~d~~i~~v~~~~------------dP~~di~ildeel~~~ 154 (392)
T 1ni3_A 106 GNAFLSHVRA------------VDAIYQVVRAF-------DDAEIIHVEGDV------------DPIRDLSIIVDELLIK 154 (392)
T ss_dssp CHHHHHHHTT------------CSEEEEEEECC-------CTTCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------------HHHHHHHHhcc-------ccceeeeecccc------------CcchhhhhchhhhHHH
Confidence 44433321 11122222221 122334466653 89 999999999999
Q ss_pred CHHHHHHHHHHHHHH-HhCCCEEEEEecCCchhHHhhcccEE-EEcCC-eEEEecCCCC
Q 008843 141 DAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSVYFKFDDIV-LLTEG-KLVYAGPARD 196 (551)
Q Consensus 141 D~~~~~~i~~~L~~l-a~~g~tvi~~~H~~~~~i~~~~D~v~-lL~~G-~iv~~G~~~~ 196 (551)
|+....+.++.++.+ ++.|.|++ +|.. ..+..+||++. +|.+| ++++.|+.++
T Consensus 155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 155 DAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 999999999999998 77777764 8985 57888999999 99999 9998887765
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.94 E-value=1.3e-09 Score=115.05 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=50.2
Q ss_pred HHHHHHHHh--hCCceEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc-----------
Q 008843 117 RLSLACELI--ASPSVIYADEPTTGLDAFQA------------EKVMEALRQLAQD-GHTVICSIHQPR----------- 170 (551)
Q Consensus 117 RvsIa~~L~--~~p~illLDEPtsGLD~~~~------------~~i~~~L~~la~~-g~tvi~~~H~~~----------- 170 (551)
.+.-+.+++ .+|+++++|||++.+|+... .++++.|++++++ |.|||+++|...
T Consensus 261 ~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~ 340 (400)
T 3lda_A 261 LLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPD 340 (400)
T ss_dssp HHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-------------
T ss_pred HHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCC
Confidence 333344443 46999999999999996533 6788889999854 999999999821
Q ss_pred -------hhHHhhcccEEEEcCCe
Q 008843 171 -------GSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 171 -------~~i~~~~D~v~lL~~G~ 187 (551)
..+.+.+|.++.|++|+
T Consensus 341 ~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 341 PKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -------CHHHHHCSEEEEEEECS
T ss_pred CccCCchhHHHHhcceEEEEEecC
Confidence 23466789999997653
No 138
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.93 E-value=1.3e-10 Score=124.72 Aligned_cols=162 Identities=16% Similarity=0.104 Sum_probs=98.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----------cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDLFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 69 (551)
+|+||||||||+++|+|++++. +|+|.++|.+..+. ++.++|++|+..+++.+||++++.++..
T Consensus 299 VGpNGSGKTTLl~~LAgll~~~-----~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLARQFEQQ-----GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 (503)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH
T ss_pred ECCCcccHHHHHHHHHHHhhhc-----CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh
Confidence 6999999999999999998765 69999987665321 2348999999888888999999988753
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHh-hCC-ceEEEeCCCCCCCHHHHHH
Q 008843 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-ASP-SVIYADEPTTGLDAFQAEK 147 (551)
Q Consensus 70 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~-~~p-~illLDEPtsGLD~~~~~~ 147 (551)
-... . -+++..|+.+.. ..+-..-+|++.+++++. ..| .++|..++|+|.|..
T Consensus 374 ~~~D----------v--VLIDTaGrl~~~---------~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---- 428 (503)
T 2yhs_A 374 RNID----------V--LIADTAGRLQNK---------SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---- 428 (503)
T ss_dssp TTCS----------E--EEECCCCSCCCH---------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH----
T ss_pred cCCC----------E--EEEeCCCccchh---------hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH----
Confidence 2110 0 011112221100 011122347788888664 456 455555588886543
Q ss_pred HHHHHHHHH-hCCCEEEEEecCCchhHHhhcccEEEEc--CCeEEEecCCCC
Q 008843 148 VMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLT--EGKLVYAGPARD 196 (551)
Q Consensus 148 i~~~L~~la-~~g~tvi~~~H~~~~~i~~~~D~v~lL~--~G~iv~~G~~~~ 196 (551)
+.++.+. ..|.|.+++||-. ......+.+-++. +..+.|.|.-+.
T Consensus 429 --~~ak~f~~~~~itgvIlTKLD--~takgG~~lsi~~~~~~PI~fig~Ge~ 476 (503)
T 2yhs_A 429 --SQAKLFHEAVGLTGITLTKLD--GTAKGGVIFSVADQFGIPIRYIGVGER 476 (503)
T ss_dssp --HHHHHHHHHTCCSEEEEECGG--GCSCCTHHHHHHHHHCCCEEEEECSSS
T ss_pred --HHHHHHHhhcCCCEEEEEcCC--CcccccHHHHHHHHHCCCEEEEecCCC
Confidence 3344444 3488999999942 2222222222232 345667666554
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.90 E-value=4.3e-12 Score=134.68 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=77.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc---------cceEEEE---------ccCCCC--CCC---
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYV---------RQEDLF--FSQ--- 57 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~---------~~~i~yv---------~Q~~~l--~~~--- 57 (551)
+|||||||||||++|+|.+++. +|+|.+.|.++... ..++++. .|++.. +..
T Consensus 173 ~GpnGSGKTTlL~allg~l~~~-----~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd 247 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQELNSS-----ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 247 (418)
T ss_dssp ECSTTSCHHHHHHHHHHHHCCT-----TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred ECCCCCCHHHHHHHHHhhcCCC-----CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCC
Confidence 5999999999999999998876 68898888776321 1224454 488654 344
Q ss_pred -CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEE
Q 008843 58 -LTVRETLSLAAELQLP-EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIY 132 (551)
Q Consensus 58 -lTV~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~ill 132 (551)
.|+.+++.++..-+.. .........+.+ +.|..+|+.+.. ....|||||+|| ||++|+.+|++..
T Consensus 248 ~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 248 LETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 6899998876421100 000001111223 346778885421 356799999999 9999999999875
No 140
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.88 E-value=1.2e-11 Score=127.78 Aligned_cols=141 Identities=20% Similarity=0.256 Sum_probs=89.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc---------ccceEEEEccCCCCCCCC------------C
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQL------------T 59 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~---------~~~~i~yv~Q~~~l~~~l------------T 59 (551)
+||||||||||+|+|+|.+++. +|+|.+.|.+... .+.++++++|++.++... +
T Consensus 61 ~G~~GaGKSTLl~~l~g~~~~~-----~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~ 135 (337)
T 2qm8_A 61 TGVPGVGKSTTIDALGSLLTAA-----GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAK 135 (337)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhhhhC-----CCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHH
Confidence 5999999999999999998776 6889998876532 124589999998777532 1
Q ss_pred HHHHHHHHH-----------------------------HcCCCCCCCHHHHH---HHHHHHHHHcCCCcccCccccCCcC
Q 008843 60 VRETLSLAA-----------------------------ELQLPEILSVEERD---EYVNSLLFKLGLVSCADSNVGDAKV 107 (551)
Q Consensus 60 V~e~l~~~~-----------------------------~l~~~~~~~~~~~~---~~v~~~l~~lgL~~~~~~~vg~~~~ 107 (551)
++|.+...- .+..+. ..++.+ +.+.+....+.+ +..|. ...
T Consensus 136 ~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~ivvl-NK~Dl----~~~ 208 (337)
T 2qm8_A 136 TRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADMIAV-NKADD----GDG 208 (337)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSEEEE-ECCST----TCC
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccEEEE-Echhc----cCc
Confidence 233321100 000000 000100 011122222222 11111 112
Q ss_pred CCCChHHhHHHHHHHHHhh------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 008843 108 RGISGGEKKRLSLACELIA------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~~------~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (551)
..+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++.+
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999987 688876 999999999999999988653
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.88 E-value=8.1e-12 Score=119.87 Aligned_cols=140 Identities=21% Similarity=0.150 Sum_probs=74.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||||||||+++|+|.+++. | ..+|+|++++..++. +..+++........+.......
T Consensus 28 ~G~sGsGKSTl~~~l~~~~~~~------g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLAAALSAQ------G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp ECCTTSCTHHHHHHHHHHHHHT------T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSGGGBCHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhhc------C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCCchhhHHH
Confidence 5999999999999999998643 1 124556665544432 2222211000001111122222
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHH-HHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA-CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa-~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (551)
..+.++.+...+..+....+ ...++|+||+||++++ +.++.++.++++|||.. .++.+.-
T Consensus 88 ----~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~ 148 (208)
T 3c8u_A 88 ----FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIW 148 (208)
T ss_dssp ----HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTC
T ss_pred ----HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhc
Confidence 22233333211112233333 2345799999999998 78888888888888841 0112222
Q ss_pred CEEEEEecCCchhHHhhccc
Q 008843 160 HTVICSIHQPRGSVYFKFDD 179 (551)
Q Consensus 160 ~tvi~~~H~~~~~i~~~~D~ 179 (551)
-.++.+.+.....+.....|
T Consensus 149 d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 149 DVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp SEEEEECCCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHH
Confidence 35666666654445555555
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.84 E-value=1.7e-11 Score=133.39 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=86.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEe-CCc-ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCC-----
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSN-KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP----- 73 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~-~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~----- 73 (551)
+|||||||||||++|+|.++++ +|.|.++|.+ ... ....++++.|........|..+.+..+.+.+ |
T Consensus 266 ~GptGSGKTTlL~aL~~~i~~~-----~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~-PD~iiv 339 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMFIPPD-----AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQR-PDYIIV 339 (511)
T ss_dssp EESTTSSHHHHHHHHGGGSCTT-----CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGC-CSEEEE
T ss_pred ECCCCCCHHHHHHHHHhhCCCC-----CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccC-CCeEEe
Confidence 4999999999999999999887 7899998865 221 1233566665433222234444333222211 0
Q ss_pred CCCCHHHHH------------------HHHHHHHHHcCCCc--ccCccc--cC---CcCCCCChHHhHHHHHHHHHhhCC
Q 008843 74 EILSVEERD------------------EYVNSLLFKLGLVS--CADSNV--GD---AKVRGISGGEKKRLSLACELIASP 128 (551)
Q Consensus 74 ~~~~~~~~~------------------~~v~~~l~~lgL~~--~~~~~v--g~---~~~~~LSGGerqRvsIa~~L~~~p 128 (551)
......+.. ..+.++++++.... ...... -+ .....+|||||||..++.
T Consensus 340 gEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai------ 413 (511)
T 2oap_1 340 GEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV------ 413 (511)
T ss_dssp SCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE------
T ss_pred CCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE------
Confidence 001111110 01223333333211 000000 01 123457999999877642
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchhHHhh
Q 008843 129 SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC--SIHQPRGSVYFK 176 (551)
Q Consensus 129 ~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~--~~H~~~~~i~~~ 176 (551)
+ | |+|||+.....+.+.+.++.++|+|+++ ++|+.. ++...
T Consensus 414 ----~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~ 456 (511)
T 2oap_1 414 ----N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADF 456 (511)
T ss_dssp ----E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHH
T ss_pred ----E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHH
Confidence 2 7 9999998777777777666666778875 778753 44433
No 143
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.80 E-value=2.4e-10 Score=105.23 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSL 66 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~ 66 (551)
+||||||||||+|+|+|.+ |. +|+|.++|.++........+++|+..++ .+||.|++.+
T Consensus 39 ~G~nGaGKTTLlr~l~g~l-~~-----~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI-GH-----QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT-TC-----CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTHHHH
T ss_pred ECCCCCCHHHHHHHHHHhC-CC-----CCeEEECCEeeeeeccCCCcceeccccc-cCCcHHHHHH
Confidence 5999999999999999998 65 7999999987642211112799998888 8999999865
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.79 E-value=3.9e-10 Score=114.60 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEE---CCEeCCccc-----ceEEEEccCCC----------------CCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV---NGKPSSNKA-----YKFAYVRQEDL----------------FFS 56 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i---~g~~~~~~~-----~~i~yv~Q~~~----------------l~~ 56 (551)
+||||||||||+|+|+|+.+|. +|+|.+ +|++.+... +.+|||+|++. ++|
T Consensus 175 ~G~sG~GKSTll~~l~g~~~~~-----~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~ 249 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGLKLR-----VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFK 249 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTCCCC------------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGST
T ss_pred ECCCCCcHHHHHHHhccccccc-----ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHH
Confidence 5999999999999999999887 899999 888765431 24799999974 588
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-cccCccccCCcCCCCCh
Q 008843 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISG 112 (551)
Q Consensus 57 ~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 112 (551)
.+|+ ||+.|.. +.. ..+...+++++++.+||. +.. +.+++.||+
T Consensus 250 ~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~-----~~~~~~lse 294 (301)
T 1u0l_A 250 EFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRY-----ENYVKMFYE 294 (301)
T ss_dssp TSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHH-----HHHHHHHHH
T ss_pred hccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHH-----HHHHHHHHH
Confidence 9999 9988753 211 123345688999999994 322 234555664
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.76 E-value=1.1e-10 Score=120.48 Aligned_cols=132 Identities=21% Similarity=0.255 Sum_probs=80.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-----ccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~ 75 (551)
.||||+|||||+++|+|..... -...+|.+..++.++.. ....+.+++|.+.+.+ ++.|++...........
T Consensus 57 ~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i 133 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDI 133 (334)
T ss_dssp ESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC
T ss_pred ECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccce
Confidence 4999999999999999987321 00125555555443321 1345999999887765 78888865443221000
Q ss_pred -CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 008843 76 -LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (551)
Q Consensus 76 -~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (551)
.......+.++..++.++|.. +++ .+..||+|+|||+.++ .+||+.+..++.++|++
T Consensus 134 ~~~~~~~~~~i~~~l~~~~li~-at~-----~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~ 191 (334)
T 1in4_A 134 MIGKGPSAKSIRIDIQPFTLVG-ATT-----RSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKR 191 (334)
T ss_dssp ---------------CCCEEEE-EES-----CGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHH
T ss_pred eeccCcccccccccCCCeEEEE-ecC-----CcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHH
Confidence 011122234555555666633 322 3568999999998654 78888899999999999
Q ss_pred HHh
Q 008843 155 LAQ 157 (551)
Q Consensus 155 la~ 157 (551)
.++
T Consensus 192 ~~~ 194 (334)
T 1in4_A 192 AAS 194 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.73 E-value=7.1e-10 Score=112.83 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEE---CCEeCCccc---ce-EEEEccCCCCCC----CCCHHHHHH--HH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV---NGKPSSNKA---YK-FAYVRQEDLFFS----QLTVRETLS--LA 67 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i---~g~~~~~~~---~~-i~yv~Q~~~l~~----~lTV~e~l~--~~ 67 (551)
+||||+|||||+|+|+|..++. +|+|.+ +|+..+... +. .||++|.+.+.+ .+|+ |++. |.
T Consensus 179 vG~sG~GKSTLln~L~g~~~~~-----~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~ 252 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPELGLR-----TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFP 252 (307)
T ss_dssp EESHHHHHHHHHHHHCC------------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSH
T ss_pred ECCCCCCHHHHHHHhccccccc-----ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHH
Confidence 5999999999999999998876 799988 787654322 12 699999987765 6899 8883 32
Q ss_pred H------HcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhH
Q 008843 68 A------ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116 (551)
Q Consensus 68 ~------~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 116 (551)
. .++........+....++++++.++|.+.+.. ....++.|++|
T Consensus 253 ~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-----~y~~lls~~~~ 302 (307)
T 1t9h_A 253 DIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-----HYVEFMTEIKD 302 (307)
T ss_dssp HHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-----HHHHHHHHHHT
T ss_pred HHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-----HHHHHHHHHhh
Confidence 1 12221111112334568899999999653322 23356677766
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.67 E-value=1.2e-12 Score=124.99 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=42.0
Q ss_pred HHH-HHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 120 LAC-ELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 120 Ia~-~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
.++ +++.+|++++|||+|+++|..+...|.+.|++..++ +...|.+ ..+|+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 344 577788888889999999999999999998887653 2334522 45898887753
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.60 E-value=1.5e-08 Score=103.11 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=68.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|||||||||+++.|++.+.+. .|+|.+.+.+..+. + ..
T Consensus 110 vG~~GsGKTTl~~~LA~~l~~~-----g~kV~lv~~D~~r~----~-------------a~------------------- 148 (306)
T 1vma_A 110 VGVNGTGKTTSCGKLAKMFVDE-----GKSVVLAAADTFRA----A-------------AI------------------- 148 (306)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECTTCH----H-------------HH-------------------
T ss_pred EcCCCChHHHHHHHHHHHHHhc-----CCEEEEEccccccH----H-------------HH-------------------
Confidence 5999999999999999998654 46666655442110 0 00
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHH---HHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL---SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv---sIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
+....+.+.+|+.. ....|||+.+++ ++++++..+|+++++|||.. ......+++.|+++.
T Consensus 149 --eqL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 149 --EQLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp --HHHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 11233445566621 235689999999 89999999999999999974 344556666666654
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.58 E-value=5.1e-11 Score=119.55 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=71.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||||||||+++|+|... .|.+.++|.++... .+.+++++|+. ...|.+++.|++......+.
T Consensus 50 ~Gp~GtGKTtLakala~~~~-------~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~-- 120 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVANESG-------LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRS-- 120 (274)
T ss_dssp ESSTTSCHHHHHHHHHHHTT-------CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----
T ss_pred ECCCCCcHHHHHHHHHHHcC-------CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccC--
Confidence 49999999999999999864 26889998776432 13467777764 45565666666543221110
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC
Q 008843 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138 (551)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPts 138 (551)
..+ .+ .+. .+.+.....|||||+||+.|++++..+|++| ||++.
T Consensus 121 ---~~~----~~------~~~-----~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 121 ---DRE----TG------ASV-----RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp -------------------CT-----THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred ---CCc----ch------HHH-----HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 000 00 011 1122345679999999999999999999985 88753
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.50 E-value=1.2e-07 Score=95.88 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=80.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+||||+||||+++.|++...+. +| +++.++.+|.. ..++.|.+...+
T Consensus 111 vG~~GsGKTTl~~~LA~~l~~~-----~G-------------~~V~lv~~D~~---r~~a~eqL~~~~------------ 157 (296)
T 2px0_A 111 FGSTGAGKTTTLAKLAAISMLE-----KH-------------KKIAFITTDTY---RIAAVEQLKTYA------------ 157 (296)
T ss_dssp EESTTSSHHHHHHHHHHHHHHT-----TC-------------CCEEEEECCCS---STTHHHHHHHHH------------
T ss_pred ECCCCCCHHHHHHHHHHHHHHh-----cC-------------CEEEEEecCcc---cchHHHHHHHHH------------
Confidence 5999999999999999987643 24 34667777652 235555554322
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH---h
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA---Q 157 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la---~ 157 (551)
+..|+... . ..+. +.-+.+|+ .+.+|+++++| |+|+|+.....+.++.+-+. .
T Consensus 158 ---------~~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~ 213 (296)
T 2px0_A 158 ---------ELLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESS 213 (296)
T ss_dssp ---------TTTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTT
T ss_pred ---------HhcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCC
Confidence 12233110 0 1122 23344555 45999999999 99999876655544443332 2
Q ss_pred CCCEEEE-EecCCchhHHhhcccEEEEcCCeEEEe
Q 008843 158 DGHTVIC-SIHQPRGSVYFKFDDIVLLTEGKLVYA 191 (551)
Q Consensus 158 ~g~tvi~-~~H~~~~~i~~~~D~v~lL~~G~iv~~ 191 (551)
.+.++++ ++|.. .++...+|++..+..+.++..
T Consensus 214 ~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 214 IQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp EEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred CeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 2334444 47774 467777787766777777753
No 151
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.48 E-value=3.5e-09 Score=114.58 Aligned_cols=151 Identities=21% Similarity=0.144 Sum_probs=83.9
Q ss_pred CCCCCCcHHHHHHHHHc--CcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCC--CHHHHHHHHHH-cCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAG--QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL--TVRETLSLAAE-LQLPEI 75 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g--~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~l--TV~e~l~~~~~-l~~~~~ 75 (551)
.|++||||||+++.|.. ..... .|++.+.+.+.+... .+....+|++ +|.++...+.. ++
T Consensus 173 aG~TGSGKSt~L~~li~sLl~~~~-----p~~v~l~liDpK~~e------l~~~~~lPhl~~~Vvtd~~~a~~~L~---- 237 (512)
T 2ius_A 173 AGTTGSGASVGVNAMILSMLYKAQ-----PEDVRFIMIDPKMLE------LSVYEGIPHLLTEVVTDMKDAANALR---- 237 (512)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTCC-----TTTEEEEEECCSSSG------GGGGTTCTTBSSSCBCSHHHHHHHHH----
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCC-----CceEEEEEECCchhh------hhhhccCCcccceeecCHHHHHHHHH----
Confidence 49999999999999875 22322 244444443332110 0100011111 12222222111 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHH----------HHHHHHhhCCc-eEEEeCCCCCCCHHH
Q 008843 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL----------SLACELIASPS-VIYADEPTTGLDAFQ 144 (551)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv----------sIa~~L~~~p~-illLDEPtsGLD~~~ 144 (551)
....+.++| .+.++..|+.+..+-. ......+||||+||. .+++++...|. ++++||++.-+|. .
T Consensus 238 ~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~-~ 313 (512)
T 2ius_A 238 WCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT-V 313 (512)
T ss_dssp HHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH-H
T ss_pred HHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh-h
Confidence 112455555 3778888886543210 011235788988753 34555667888 7899999998884 3
Q ss_pred HHHHHHHHHHHHhC----CCEEEEEecCCc
Q 008843 145 AEKVMEALRQLAQD----GHTVICSIHQPR 170 (551)
Q Consensus 145 ~~~i~~~L~~la~~----g~tvi~~~H~~~ 170 (551)
..++.+.+.++++. |.++|+++|+|+
T Consensus 314 ~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 314 GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 35566666666543 679999999997
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.47 E-value=6e-07 Score=87.01 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=45.3
Q ss_pred hCCceEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchh-------HHhhcccEEEEcC
Q 008843 126 ASPSVIYADEPTTGL--DAFQAEKVMEALRQLA-QDGHTVICSIHQPRGS-------VYFKFDDIVLLTE 185 (551)
Q Consensus 126 ~~p~illLDEPtsGL--D~~~~~~i~~~L~~la-~~g~tvi~~~H~~~~~-------i~~~~D~v~lL~~ 185 (551)
.+|+++++|||++.+ |.....+.+..|.+++ +.|.||++++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6655666666666665 5689999999986531 4567899999963
No 153
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.46 E-value=1.8e-08 Score=94.79 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 115 KKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 115 rqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
.++..+|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999988653
No 154
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.44 E-value=1.1e-08 Score=113.81 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=83.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCC----------------------CCCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED----------------------LFFSQL 58 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~----------------------~l~~~l 58 (551)
+||||+|||||+++|++..++.. .|.+.+++.+.+.....++++|+.. ..+..+
T Consensus 66 ~Gp~GtGKTtlar~ia~~l~~~~----~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~ 141 (604)
T 3k1j_A 66 IGEPGTGKSMLGQAMAELLPTET----LEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKST 141 (604)
T ss_dssp ECCTTSSHHHHHHHHHHTSCCSS----CEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC----------
T ss_pred EeCCCCCHHHHHHHHhccCCccc----CCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhccccccc
Confidence 49999999999999999987651 4888998888766666788988753 111122
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC
Q 008843 59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138 (551)
Q Consensus 59 TV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPts 138 (551)
++.+|+.....-..+...- .+...... +.+|..+.. ....+++|+|++|++..+.....++.+||+||...
T Consensus 142 ~~~~nl~v~~~~~~~~~~v-~~~~~~~~---~L~G~~~~~-----~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~ 212 (604)
T 3k1j_A 142 VLVPKLLVDNCGRTKAPFI-DATGAHAG---ALLGDVRHD-----PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT 212 (604)
T ss_dssp -CCCEEEECCTTCSSCCEE-ECTTCCHH---HHHCEECCC-----CC----CCCCGGGGEECCHHHHTTTSEEEETTGGG
T ss_pred ccccceeeccccCCCCCEE-EcCCCCHH---hcCceEEec-----hhhcCCccccccccccCceeeecCCCEEEEechhh
Confidence 2222211100000000000 00000011 122211100 11235799999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHH
Q 008843 139 GLDAFQAEKVMEALRQ 154 (551)
Q Consensus 139 GLD~~~~~~i~~~L~~ 154 (551)
|++.....+.+.|++
T Consensus 213 -l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 213 -LSLKMQQSLLTAMQE 227 (604)
T ss_dssp -SCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHc
Confidence 899888888887764
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.42 E-value=1.4e-07 Score=97.70 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhC--CceEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCch-----
Q 008843 116 KRLSLACELIAS--PSVIYADEPTTGL----------DA---FQAEKVMEALRQL----AQDGHTVICSIHQPRG----- 171 (551)
Q Consensus 116 qRvsIa~~L~~~--p~illLDEPtsGL----------D~---~~~~~i~~~L~~l----a~~g~tvi~~~H~~~~----- 171 (551)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|.|||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888755 9999999999998 33 2223445555555 3568999999996431
Q ss_pred ----------hHHhhcccEEEEcCCeEEEecC
Q 008843 172 ----------SVYFKFDDIVLLTEGKLVYAGP 193 (551)
Q Consensus 172 ----------~i~~~~D~v~lL~~G~iv~~G~ 193 (551)
.+.+.+|.++.++.++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2567789999998877665554
No 156
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.40 E-value=3.8e-07 Score=92.23 Aligned_cols=105 Identities=21% Similarity=0.113 Sum_probs=70.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~ 80 (551)
+|+||+||||+++.|++...+. .|+|.+.+.+..... ++ +.+
T Consensus 104 ~g~~G~GKTT~~~~la~~~~~~-----~~~v~l~~~d~~~~~----------------~~-~ql---------------- 145 (295)
T 1ls1_A 104 VGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAADTQRPA----------------AR-EQL---------------- 145 (295)
T ss_dssp ECCTTTTHHHHHHHHHHHHHHT-----TCCEEEEECCSSCHH----------------HH-HHH----------------
T ss_pred ECCCCCCHHHHHHHHHHHHHHc-----CCeEEEecCCcccHh----------------HH-HHH----------------
Confidence 4999999999999999998654 567777665442110 00 000
Q ss_pred HHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 008843 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP-TTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEP-tsGLD~~~~~~i~~~L~~l 155 (551)
..+.+..|+..... + .+-+-.+.+|.+|+.+...+++++++||| ++|+|.....++.+..+.+
T Consensus 146 -----~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 146 -----RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp -----HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred -----HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 01223445532110 0 12244566788999988899999999999 9999998888887777665
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.38 E-value=1.6e-06 Score=92.98 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=60.5
Q ss_pred CCCChHHhHHHHHHHHHh--hCCceEEEeCCCCCCCH--------HHHHHHHHHHHHHHh-CCCEEEEEec---------
Q 008843 108 RGISGGEKKRLSLACELI--ASPSVIYADEPTTGLDA--------FQAEKVMEALRQLAQ-DGHTVICSIH--------- 167 (551)
Q Consensus 108 ~~LSGGerqRvsIa~~L~--~~p~illLDEPtsGLD~--------~~~~~i~~~L~~la~-~g~tvi~~~H--------- 167 (551)
.++|.+|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++ .|.+||+++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 479999987 5667776 68999999999987742 344678888999885 4899999999
Q ss_pred C--Cc-------hhHHhhcccEEEEcCCeE
Q 008843 168 Q--PR-------GSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 168 ~--~~-------~~i~~~~D~v~lL~~G~i 188 (551)
+ |. ..+.+.+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 42 146778999999976543
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.24 E-value=9.2e-10 Score=110.16 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=67.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||+|||||+++|++... .|.+.++|.++... ..++++++|+.. ..+.+++.|++......+...
T Consensus 79 ~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~ 151 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151 (278)
T ss_dssp ECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC----
T ss_pred ECCCcChHHHHHHHHHHHcC-------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc
Confidence 49999999999999999764 57888887654221 233667777643 566777888875433211100
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCce
Q 008843 75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSV 130 (551)
Q Consensus 75 -~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~i 130 (551)
.....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 152 ~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 152 VGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp ----CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred cCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 001122223333332 24899999999999999999876
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.21 E-value=1.2e-09 Score=107.53 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=66.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~l~~~~ 74 (551)
+||||+|||||+++|++... .|.+.++|.++... ...+++++|+. ...+.+++.|++......+...
T Consensus 55 ~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~ 127 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 127 (254)
T ss_dssp ECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-----
T ss_pred ECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc
Confidence 49999999999999999763 57788887654221 23356777764 3556677777774332211100
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCce
Q 008843 75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSV 130 (551)
Q Consensus 75 -~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~i 130 (551)
....++..+.+++++ ..|||||+||+.|++++..+|++
T Consensus 128 ~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 128 VGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp ----CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred ccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 001122233333333 24789999999999999999986
No 160
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.18 E-value=2.6e-06 Score=91.62 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=43.8
Q ss_pred hHHhHHHHHHHHHhhCCceEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 008843 112 GGEKKRLSLACELIASPSVIYADEP----------TTGLDAFQAEKVMEALRQLA----QDGHTVICSIHQPR 170 (551)
Q Consensus 112 GGerqRvsIa~~L~~~p~illLDEP----------tsGLD~~~~~~i~~~L~~la----~~g~tvi~~~H~~~ 170 (551)
|++++|..++.+....|.+||+||+ +.|.|......+.++|..+- ..+..||.++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 34677766666777777663 34678999999974
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.18 E-value=3.8e-06 Score=87.44 Aligned_cols=147 Identities=24% Similarity=0.196 Sum_probs=83.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCC------CcceeeEEEECCEeCCcccceEEEEccCCCCCCCCCHH---HHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASP------RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR---ETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~------~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~l~~~lTV~---e~l~~~~~l~ 71 (551)
+|++|||||||+|.|+|...... .-...|.+.++|.++.- ....|++.|.+. ..|. .++.......
T Consensus 185 vG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHHHHGGGGSS
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHHHHHHHhCC
Confidence 59999999999999999864210 00246889998865421 112455444221 1121 1111111000
Q ss_pred -----CCCCCCH---HHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHH----HHH-hhCCceEEEeCCCC
Q 008843 72 -----LPEILSV---EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA----CEL-IASPSVIYADEPTT 138 (551)
Q Consensus 72 -----~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa----~~L-~~~p~illLDEPts 138 (551)
....... .+..+.+.++++.+++.+..--.+++ +...+|+|+++|+.++ +++ ..+|++ +|+|
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~S 334 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPIS 334 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECB
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEE
Confidence 0001111 22334467788888875433112233 3456788898988887 444 334444 8999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 008843 139 GLDAFQAEKVMEALRQLAQ 157 (551)
Q Consensus 139 GLD~~~~~~i~~~L~~la~ 157 (551)
++|.....++.+.|.++..
T Consensus 335 A~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc
Confidence 9999999999999988653
No 162
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.18 E-value=1.6e-07 Score=95.61 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=52.0
Q ss_pred CCCCCCcHHHHHHHHHcCcC--CCCCcceeeEEEE---CCEeCCcc-cceEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM--ASPRLHLSGLLEV---NGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~--~~~~~~~~G~i~i---~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~ 71 (551)
+||||||||||+++|+|++. |+ +|+|.+ +|...... ...+|++ |+..+++.+|+.+++.+...++
T Consensus 86 ~G~~GsGKSTl~~~L~~~l~~~~~-----~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQALLSRWPE-----HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp EECTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHhhCCC-----CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 59999999999999999877 65 789998 88765322 2347888 8777888899999998876654
No 163
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.13 E-value=2.9e-06 Score=87.95 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=49.0
Q ss_pred CCCCChHHhHHHHHHHHHhhCCceEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q 008843 107 VRGISGGEKKRLSLACELIASPSVIYAD-EPTTGLDAFQAEKVMEALRQLAQDGHTVICSI--HQPR 170 (551)
Q Consensus 107 ~~~LSGGerqRvsIa~~L~~~p~illLD-EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~--H~~~ 170 (551)
...+|+||+|++. +.+...++-++++| +|..|+|......+++.+++... +..+|++. ||..
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 4568999998876 55556777889999 99999999998888887777654 67777777 7753
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.12 E-value=1.4e-06 Score=81.97 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008843 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (551)
Q Consensus 118 vsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (551)
...|++++.+|++.++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887754
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.08 E-value=4e-07 Score=88.54 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-------------ccceEEEEccC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------------KAYKFAYVRQE 51 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-------------~~~~i~yv~Q~ 51 (551)
+|||||||||||++|+|.+.|+ +|+|.++|.++.. ....++||+|+
T Consensus 33 ~GpnGsGKSTll~~i~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTALIPD-----LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HSCCSHHHHHHHHHHHHHHSCC-----TTTC------------------CGGGBCSSEEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcccccC-----CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 5999999999999999999887 6888888876521 02348888874
No 166
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.02 E-value=6.5e-06 Score=93.85 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=58.1
Q ss_pred cCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchhHHhhcccE
Q 008843 106 KVRGISGGEKKRLSLACELIASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICS-IHQPRGSVYFKFDDI 180 (551)
Q Consensus 106 ~~~~LSGGerqRvsIa~~L~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~-~H~~~~~i~~~~D~v 180 (551)
.+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++ ..+...+++.
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~ 262 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDA 262 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSC
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCC
Confidence 455689999999999999999999999999996 999887777777666555455677775 8875 4566666653
No 167
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.94 E-value=3.1e-07 Score=86.70 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=37.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCc-----ccceEEEEccCCCCCCCCCHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQEDLFFSQLTVRETL 64 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l 64 (551)
+||||||||||+++|+|..+ . +.+++..... ....++|++|+...++.+++.+++
T Consensus 13 ~Gp~GsGKSTl~~~L~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKALA-E--------IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHSS-S--------EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred ECcCCCCHHHHHHHHHhhCC-C--------eEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 59999999999999999863 1 3344433322 123478999987666655555443
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.92 E-value=6.1e-06 Score=88.06 Aligned_cols=96 Identities=11% Similarity=0.164 Sum_probs=64.6
Q ss_pred hCCceEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEE-EcCCeEEEecCCCCc-hhhH-
Q 008843 126 ASPSVIYADEPTTGLDA-FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL-LTEGKLVYAGPARDE-PLAY- 201 (551)
Q Consensus 126 ~~p~illLDEPtsGLD~-~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~l-L~~G~iv~~G~~~~~-~~~~- 201 (551)
.+|++|++||+..-.+. .++..++..+..+.+.|+.+|+++|.|..++..+.+++.- +..|.++..++++.. ....
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887664 6778899999998888999999999976543333344433 456888887877652 2222
Q ss_pred ---HhhcCCCCCCCCCHHHHHHHhh
Q 008843 202 ---FSRFGYTCPDHVNPAEFLADLI 223 (551)
Q Consensus 202 ---f~~~g~~~p~~~~~ad~~~~~~ 223 (551)
.+..|...++ ...+++.+..
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~~ 295 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAENV 295 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHHC
T ss_pred HHHHHHcCCCCCH--HHHHHHHHhc
Confidence 2334554443 4456666544
No 169
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.87 E-value=3.4e-06 Score=87.38 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=18.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~ 21 (551)
.||||||||||+..+++...+
T Consensus 67 ~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 67 FGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EESTTSSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 499999999999999987643
No 170
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.79 E-value=4.2e-05 Score=78.97 Aligned_cols=44 Identities=5% Similarity=-0.109 Sum_probs=35.6
Q ss_pred hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q 008843 126 ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ---DGHTVICSIHQPR 170 (551)
Q Consensus 126 ~~p~illLDEPtsGLD~~~~~~i~~~L~~la~---~g~tvi~~~H~~~ 170 (551)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5779999999873
No 171
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.79 E-value=2.4e-06 Score=91.86 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS 39 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~ 39 (551)
+|||||||||||++|+|+.+|+ +|+|.++|+++.
T Consensus 35 iG~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~~ 68 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVTALIPD-----LTLLNFRNTTEA 68 (483)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCC-----TTTCCCCCTTSC
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CCEEEECCEEcc
Confidence 5999999999999999999887 799999998764
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.59 E-value=1.4e-06 Score=82.42 Aligned_cols=43 Identities=28% Similarity=0.331 Sum_probs=31.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc----cceEEEEccCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQED 52 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~----~~~i~yv~Q~~ 52 (551)
+||||||||||+++|++.+ |.+.++|.++... ....|+++|+.
T Consensus 35 ~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVADET---------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp ECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred ECCCCCCHHHHHHHHHHhh---------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 5999999999999999964 6678888765432 12356666654
No 173
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.54 E-value=0.00034 Score=69.75 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=38.1
Q ss_pred ChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc
Q 008843 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAF----------QAEKVMEALRQLAQ----DGHTVICSIHQPR 170 (551)
Q Consensus 111 SGGerqRvsIa~~L~~~p~illLDEPtsGLD~~----------~~~~i~~~L~~la~----~g~tvi~~~H~~~ 170 (551)
+++++.|..++.+...+|.++++||+.+-++.. ....++..+..... .+..||.++++|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 356677777777778899999999998765532 22234444443321 2356778888753
No 174
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.53 E-value=6.1e-06 Score=78.12 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=39.9
Q ss_pred ChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchh-HHhhcccEEEEc
Q 008843 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS-VYFKFDDIVLLT 184 (551)
Q Consensus 111 SGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~-i~~~~D~v~lL~ 184 (551)
+.|+.+|..++.....+|+.+..+ .+.+++.....+.+.++.. .+.++|+.+|..... ....||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678899999999888888654333 2345555555554444332 356888888875322 245678777764
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.51 E-value=7.6e-05 Score=76.64 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=43.0
Q ss_pred CCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEec
Q 008843 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD--GHTVICSIH 167 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~--g~tvi~~~H 167 (551)
.||++|.+|+..|...+.++++++.|+|... ..++...++++.++ |..+|++-|
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 5999999999999999999999999998654 34677777777644 567777643
No 176
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.46 E-value=4.3e-07 Score=94.88 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=65.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcccceEEEEccCCC-CCCCCCHHHHHHHHHHcC-CCCCCCH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL-FFSQLTVRETLSLAAELQ-LPEILSV 78 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~-~~~~~~~ 78 (551)
.||||||||||+++|+|.. .|++...+.+.......+|+++|... +++..+....+ .+ .... ..
T Consensus 175 ~G~~GsGKSTl~~~l~~~~--------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~-----~r~l~~~-~~ 240 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLELC--------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE-----SRDLPSG-QG 240 (377)
T ss_dssp ECSTTSSHHHHHHHHHHHH--------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTT-----TTTCCCC-SH
T ss_pred ECCCCCCHHHHHHHHHhhc--------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHH-----Hhhcccc-Cc
Confidence 4999999999999999953 46655412111111223667777653 33333322111 00 0000 00
Q ss_pred HHHHHHHHHHHHH---cCCCc-cc---C----ccccCCcCCCCChHHhHHHHHHHHHhhCCceEE-EeCCCC
Q 008843 79 EERDEYVNSLLFK---LGLVS-CA---D----SNVGDAKVRGISGGEKKRLSLACELIASPSVIY-ADEPTT 138 (551)
Q Consensus 79 ~~~~~~v~~~l~~---lgL~~-~~---~----~~vg~~~~~~LSGGerqRvsIa~~L~~~p~ill-LDEPts 138 (551)
......+.+.++. +.+.. .. + ...-+.....+++|+++|+..+.+++.+|++++ ||+|+.
T Consensus 241 ~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 241 INNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred chHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 0011223333331 11110 00 0 001122456789999999998888888999877 999997
No 177
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.45 E-value=1.6e-05 Score=74.16 Aligned_cols=22 Identities=50% Similarity=0.718 Sum_probs=19.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMAS 22 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~ 22 (551)
+||||||||||+++|+|+.++.
T Consensus 7 ~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp ESSSSSSHHHHHHHHHHHCGGG
T ss_pred ECCCCCCHHHHHHHHHhhCCcc
Confidence 5999999999999999998643
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.42 E-value=8.9e-07 Score=95.78 Aligned_cols=111 Identities=19% Similarity=0.243 Sum_probs=68.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHcCCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~l~~~~ 74 (551)
.||||+|||||+++|++... .+.+.++|.++... ..++..++|+.. ..+.+.+.|++......+...
T Consensus 70 ~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~ 142 (499)
T 2dhr_A 70 VGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142 (499)
T ss_dssp ECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS
T ss_pred ECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC
Confidence 49999999999999999763 46788888765432 123555666542 344555555553221111100
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEEeCCCC
Q 008843 75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138 (551)
Q Consensus 75 -~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illLDEPts 138 (551)
....++..+.+++++. .|||||+|+..|+++...+|++ |||+..
T Consensus 143 ~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 143 VGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp TTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred cCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 0112333344444443 3788899998899999999987 788764
No 179
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.41 E-value=0.00014 Score=73.34 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=45.4
Q ss_pred CChHHhHHHHHHHHHh--hCCceEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCchhHHhhcccEE
Q 008843 110 ISGGEKKRLSLACELI--ASPSVIYADEPTTGLDAFQ-AEKVMEALRQLAQD-GH--TVICSIHQPRGSVYFKFDDIV 181 (551)
Q Consensus 110 LSGGerqRvsIa~~L~--~~p~illLDEPtsGLD~~~-~~~i~~~L~~la~~-g~--tvi~~~H~~~~~i~~~~D~v~ 181 (551)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+- ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 899986 4566666 67999998 7899876 67788888888754 43 556666663 45666666554
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.38 E-value=0.0011 Score=68.52 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=41.0
Q ss_pred CCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEec
Q 008843 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIH 167 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~~~H 167 (551)
+-++.++++..+++..+.+|+++++.-..+..|... ...++.++.+...|. ++++.+.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 357888999999999999999877774333445433 455667777766564 7776665
No 181
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.18 E-value=5.2e-05 Score=77.92 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=17.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.||+|+|||||++.+++...
T Consensus 51 ~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp EECTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999999764
No 182
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.13 E-value=2.4e-05 Score=76.97 Aligned_cols=47 Identities=30% Similarity=0.293 Sum_probs=36.3
Q ss_pred CCCCCCcHHHHHHHHH---cCcCCCCCcceeeEEE--------ECCEeCCcc------cceEEEEccCC
Q 008843 1 MGPSGSGKTTLLNVLA---GQLMASPRLHLSGLLE--------VNGKPSSNK------AYKFAYVRQED 52 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~---g~~~~~~~~~~~G~i~--------i~g~~~~~~------~~~i~yv~Q~~ 52 (551)
+|||||||||++++|+ |...++ +|.+. .+|.++... ...+++++|++
T Consensus 33 ~G~~GsGKSTl~k~La~~Lg~~~~d-----~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 33 DGPSGAGKGTLCKALAESLNWRLLD-----SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCEEEE-----HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcCC-----CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 5999999999999999 887665 78888 788776432 23478888753
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.08 E-value=0.0001 Score=68.41 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~ 21 (551)
+||||||||||++.|++..++
T Consensus 11 ~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp ECCTTSSHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHHhhCCc
Confidence 599999999999999998753
No 184
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.07 E-value=0.00012 Score=68.68 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMAS 22 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~ 22 (551)
+||||||||||+++|++...++
T Consensus 12 ~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ECSTTSCHHHHHHHHHHCTTCC
T ss_pred ECCCCCCHHHHHHHHHHhhCCC
Confidence 5999999999999999998553
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.04 E-value=0.001 Score=67.30 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=36.0
Q ss_pred hhCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 008843 125 IASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (551)
Q Consensus 125 ~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~ 171 (551)
..++++|++||+-. .-|...+..+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35799999999865 234477888899998888778878888776543
No 186
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.87 E-value=0.0015 Score=69.18 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=31.3
Q ss_pred HHHHHHhhCCceEEEeCCC-CC--CCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 008843 119 SLACELIASPSVIYADEPT-TG--LDAFQAEKVMEALRQLAQDGHTVICSIHQ 168 (551)
Q Consensus 119 sIa~~L~~~p~illLDEPt-sG--LD~~~~~~i~~~L~~la~~g~tvi~~~H~ 168 (551)
+++.+...+++++++|+|- .+ .|+....++.+.++.+......+++..|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 3444445689999999986 34 78777777766655554333444444543
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.86 E-value=0.0011 Score=62.06 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=29.5
Q ss_pred hhCCceEEEeCCCC-CCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCchhHHh
Q 008843 125 IASPSVIYADEPTT-GLDAFQAEKVM-EALRQLAQDGHTVICSIHQPRGSVYF 175 (551)
Q Consensus 125 ~~~p~illLDEPts-GLD~~~~~~i~-~~L~~la~~g~tvi~~~H~~~~~i~~ 175 (551)
+.++++|++||+-. .++...+.+++ .++......+..+|++++.+..++..
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 34678999999932 23333344344 35555445567777777766555443
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.81 E-value=0.00022 Score=79.86 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=30.6
Q ss_pred hhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 008843 125 IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 125 ~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~ 170 (551)
..+..++++| |+.|+|..+. +.++.+.+.+..+|+++|...
T Consensus 97 ~ad~~ilVvD-~~~g~~~qt~----~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 97 AADAALVAVS-AEAGVQVGTE----RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HCSEEEEEEE-TTTCSCHHHH----HHHHHHHHTTCCEEEEEECGG
T ss_pred hcCcEEEEEc-CCcccchhHH----HHHHHHHHccCCEEEEecCCc
Confidence 5678889999 9999998776 333444456888888888854
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.79 E-value=0.0044 Score=63.53 Aligned_cols=54 Identities=7% Similarity=0.090 Sum_probs=36.3
Q ss_pred HHHHHHHHHh----hCCceEEEeCCCCCCCHH------------HHHHHHHHHHHHHh-CCCEEEEEecCC
Q 008843 116 KRLSLACELI----ASPSVIYADEPTTGLDAF------------QAEKVMEALRQLAQ-DGHTVICSIHQP 169 (551)
Q Consensus 116 qRvsIa~~L~----~~p~illLDEPtsGLD~~------------~~~~i~~~L~~la~-~g~tvi~~~H~~ 169 (551)
+.+..++.++ .+++++++|+.++-.+.. ...++++.|+++++ .|.+||++.|-.
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 4455566666 568999999999865432 13456666777774 478888887753
No 190
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.79 E-value=0.00026 Score=68.21 Aligned_cols=20 Identities=50% Similarity=0.552 Sum_probs=11.5
Q ss_pred CCCCCCcHHHHHHHHH-cCcC
Q 008843 1 MGPSGSGKTTLLNVLA-GQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~-g~~~ 20 (551)
+||||||||||+++|+ |..+
T Consensus 33 ~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECSCC----CHHHHHHC----
T ss_pred ECCCCCCHHHHHHHHHhcCCC
Confidence 5999999999999999 9864
No 191
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.77 E-value=0.00011 Score=69.16 Aligned_cols=33 Identities=39% Similarity=0.508 Sum_probs=26.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEE--EECCEeCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL--EVNGKPSS 39 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i--~i~g~~~~ 39 (551)
+||||||||||+++|++++. . .|.+ .++|.++.
T Consensus 31 ~G~sGsGKSTl~~~La~~l~-~-----~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 31 TGLSGSGKSTLACALNQMLY-Q-----KGKLCYILDGDNVR 65 (200)
T ss_dssp ECSTTSSHHHHHHHHHHHHH-H-----TTCCEEEEEHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHH-h-----cCceEEEecCchhh
Confidence 59999999999999999875 2 3555 77776553
No 192
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.76 E-value=0.0082 Score=57.73 Aligned_cols=43 Identities=7% Similarity=0.143 Sum_probs=28.5
Q ss_pred hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecC
Q 008843 126 ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ--DGHTVICSIHQ 168 (551)
Q Consensus 126 ~~p~illLDEPtsGLD~~~~~~i~~~L~~la~--~g~tvi~~~H~ 168 (551)
.+|+++++..+.+.++......+..+++.... ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 36899999999888888655555444443322 12588888883
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.75 E-value=0.0013 Score=66.12 Aligned_cols=19 Identities=42% Similarity=0.730 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||.++|++..
T Consensus 55 ~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 55 YGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp ECSSSSSHHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHHHHh
Confidence 4999999999999999965
No 194
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.73 E-value=0.0029 Score=64.14 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=41.7
Q ss_pred CChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE--EEEEec
Q 008843 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHT--VICSIH 167 (551)
Q Consensus 110 LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~-g~t--vi~~~H 167 (551)
||++|++|+..|...+.++++++.|+|... ..++.+.++++.++ |.. +|++-|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 899999999999999999999999998643 45567777777644 556 777655
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.64 E-value=0.00028 Score=68.09 Aligned_cols=29 Identities=34% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS 38 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~ 38 (551)
.|+||||||||+++|+|. .|+|.++++|.
T Consensus 26 ~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 26 EGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp ECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred ECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 499999999999999997 26677777664
No 196
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.60 E-value=0.00035 Score=71.25 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeCCcc--------------cceEEEE-ccCCCCCCCCCHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------------AYKFAYV-RQEDLFFSQLTVRETLS 65 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~~~~--------------~~~i~yv-~Q~~~l~~~lTV~e~l~ 65 (551)
+|+||+||||++..|++.+.+. .|+|.+.+.+.... ...+.++ .|.....|..++.+++.
T Consensus 111 vG~~G~GKTT~~~~LA~~l~~~-----g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 111 VGVNGTGKTTSLAKMANYYAEL-----GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIK 185 (320)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHH
Confidence 4999999999999999988754 57788776654321 2237777 56544444334444443
No 197
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.59 E-value=0.00056 Score=62.27 Aligned_cols=20 Identities=50% Similarity=0.717 Sum_probs=18.1
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+||||||||||+++|++.+.
T Consensus 10 ~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp ECCTTSCHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 59999999999999999753
No 198
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.58 E-value=0.0007 Score=64.19 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=19.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~ 21 (551)
+||||||||||++.|++..++
T Consensus 14 ~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp ECCTTSCHHHHHHHHHHSTTC
T ss_pred ECcCCCCHHHHHHHHHhhCCC
Confidence 599999999999999999865
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.57 E-value=0.0064 Score=61.73 Aligned_cols=54 Identities=24% Similarity=0.181 Sum_probs=37.6
Q ss_pred hHHHHHHHHHh---hCCceEEEeCCCCCCCH--------HH----HHHHHHHHHHHHh-CCCEEEEEecC
Q 008843 115 KKRLSLACELI---ASPSVIYADEPTTGLDA--------FQ----AEKVMEALRQLAQ-DGHTVICSIHQ 168 (551)
Q Consensus 115 rqRvsIa~~L~---~~p~illLDEPtsGLD~--------~~----~~~i~~~L~~la~-~g~tvi~~~H~ 168 (551)
.+.+..++.++ .+|+++++|+.++-.+. .. ..++++.|+++++ .|.+||++.|-
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 35677777787 57999999999875432 11 2455666666664 48888888774
No 200
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.54 E-value=0.00056 Score=62.97 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMAS 22 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~ 22 (551)
+||||||||||+++|.+.+.+.
T Consensus 32 ~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 32 VGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp EECTTSSHHHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHcCC
Confidence 5999999999999999977543
No 201
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.47 E-value=0.00053 Score=64.88 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=18.3
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+||||||||||++.|.+..+
T Consensus 25 ~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 25 IGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ECCTTSSHHHHHHHHHHHCT
T ss_pred ECcCCCCHHHHHHHHHhhCC
Confidence 59999999999999999765
No 202
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.42 E-value=0.0003 Score=66.40 Aligned_cols=31 Identities=39% Similarity=0.231 Sum_probs=24.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK 36 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~ 36 (551)
+|+||||||||++.|++.+++. .|.|.+.+.
T Consensus 28 ~G~~GsGKstl~~~l~~~~~~~-----~~~v~~~~~ 58 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQTLREQ-----GISVCVFHM 58 (201)
T ss_dssp EECTTSSHHHHHHHHHHHHHHT-----TCCEEEEEG
T ss_pred ECCCCCCHHHHHHHHHHHHhhc-----CCeEEEecc
Confidence 4999999999999999987654 466655443
No 203
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.38 E-value=0.00053 Score=62.69 Aligned_cols=29 Identities=38% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS 38 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~ 38 (551)
+|+|||||||+++.|++.+ |.+.+++..+
T Consensus 14 ~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp ECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred EcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 5999999999999999863 4556665443
No 204
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.35 E-value=0.0023 Score=67.90 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=27.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCC------C-CCcceeeEEEECCEeC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA------S-PRLHLSGLLEVNGKPS 38 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~------~-~~~~~~G~i~i~g~~~ 38 (551)
+|+||+|||||+|.|+|.... + ..-...|.+.++|+++
T Consensus 186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 699999999999999998531 0 0112468899999754
No 205
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.33 E-value=0.0021 Score=61.10 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=31.6
Q ss_pred hCCceEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q 008843 126 ASPSVIYADEPTTGL-DAFQAEKVMEALRQLAQDGHT-VICSIHQPR 170 (551)
Q Consensus 126 ~~p~illLDEPtsGL-D~~~~~~i~~~L~~la~~g~t-vi~~~H~~~ 170 (551)
.+|.++++||.-.-- +......+.+.+....+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233367788888888776765 777777543
No 206
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.32 E-value=0.0015 Score=61.46 Aligned_cols=19 Identities=47% Similarity=0.555 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|+||||||||.+.|++..
T Consensus 27 ~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EESTTSSHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999999975
No 207
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.0026 Score=65.11 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||++.++...
T Consensus 50 ~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CBCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999865
No 208
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.19 E-value=0.0013 Score=66.97 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~ 21 (551)
+||||||||||+++|++++..
T Consensus 98 ~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp ECCTTSSHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHhcc
Confidence 499999999999999998753
No 209
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.17 E-value=0.00073 Score=73.85 Aligned_cols=33 Identities=39% Similarity=0.613 Sum_probs=26.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceee-EEE-ECCEeC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-LLE-VNGKPS 38 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G-~i~-i~g~~~ 38 (551)
+|+||||||||+++|+|++.+. +| ++. ++|.++
T Consensus 375 iG~sGSGKSTLar~La~~L~~~-----~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 375 TGLSGAGKSTLARALAARLMEM-----GGRCVTLLDGDIV 409 (552)
T ss_dssp EESSCHHHHHHHHHHHHHHHTT-----CSSCEEEESSHHH
T ss_pred ECCCCChHHHHHHHHHHhhccc-----CCceEEEECCcHH
Confidence 5999999999999999998765 44 564 777654
No 210
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.17 E-value=0.01 Score=58.42 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=30.3
Q ss_pred HhhCCceEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEecCC
Q 008843 124 LIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLAQ----DGHTVICSIHQP 169 (551)
Q Consensus 124 L~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la~----~g~tvi~~~H~~ 169 (551)
...+|.++++||.-. +-|......+.+++..+.. .+..+|++++.|
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 345688999999733 1255566777777777641 245677777765
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.14 E-value=0.0045 Score=70.82 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.3
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.||||+|||||+++|++...
T Consensus 244 ~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 244 YGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CSCTTSSHHHHHHHHHHTTT
T ss_pred ECcCCCCHHHHHHHHHHHcC
Confidence 59999999999999999864
No 212
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.13 E-value=0.00076 Score=65.11 Aligned_cols=66 Identities=17% Similarity=-0.012 Sum_probs=39.7
Q ss_pred ChHHhHHHHHHHHHhhCCceEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcc
Q 008843 111 SGGEKKRLSLACELIASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178 (551)
Q Consensus 111 SGGerqRvsIa~~L~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D 178 (551)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.....+-+++++|.--+.......|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445555542 33578899999999976 7887766555555544433334666665544444444444
No 213
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.09 E-value=0.018 Score=55.73 Aligned_cols=19 Identities=42% Similarity=0.744 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||.++++...
T Consensus 45 ~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 3999999999999999864
No 214
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.96 E-value=0.022 Score=58.58 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||.++|+...
T Consensus 123 ~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 123 FGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp ESSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 3999999999999999864
No 215
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.87 E-value=0.0026 Score=57.12 Aligned_cols=17 Identities=41% Similarity=0.784 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAG 17 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g 17 (551)
+|||||||||++++|.-
T Consensus 29 ~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAILV 45 (149)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999874
No 216
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.77 E-value=0.00057 Score=74.23 Aligned_cols=141 Identities=14% Similarity=0.080 Sum_probs=69.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCC-----------------------C--CCc--------ceeeEEEECCEeCCcc------
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA-----------------------S--PRL--------HLSGLLEVNGKPSSNK------ 41 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~-----------------------~--~~~--------~~~G~i~i~g~~~~~~------ 41 (551)
+|+|||||||||++|...... . ... .-.+.+.+||.+.+..
T Consensus 66 ~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~ 145 (517)
T 4ad8_A 66 TGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWA 145 (517)
T ss_dssp EESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHHHHHh
Confidence 599999999999999654210 0 000 0135678888877542
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-CCcccCccccCCcCCCCChHHhHHHHH
Q 008843 42 AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSL 120 (551)
Q Consensus 42 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGerqRvsI 120 (551)
...+..++|++.+.......+ ..|--..................++++.++ +.... ......++-.+.|...|
T Consensus 146 ~~li~i~~q~~~~~l~~~~~r-r~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~l~~l~~ql~ei 219 (517)
T 4ad8_A 146 QGRLTIHWQHSAVSLLSPANQ-RGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQ-----RERARQIDLLAFQVQEI 219 (517)
T ss_dssp TTTEEEESGGGGGTTTSHHHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred hhheEEeCCchHHhcCCHHHH-HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHH
Confidence 123788899876655433322 222111100000000111111222222221 10000 01123567777888888
Q ss_pred HHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 008843 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162 (551)
Q Consensus 121 a~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tv 162 (551)
+.+ .|.+.....+.+.++.+.+.+..+
T Consensus 220 ~~~---------------~l~~~E~e~L~~~~~~L~~~~~~~ 246 (517)
T 4ad8_A 220 SEV---------------SPDPGEEEGLNTELSRLSNLHESS 246 (517)
T ss_dssp HHH---------------CCCSSCHHHHHHHHHHHHHHC---
T ss_pred Hhc---------------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 776 344455677777888887666544
No 217
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.75 E-value=0.0072 Score=54.91 Aligned_cols=19 Identities=47% Similarity=0.760 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|+|..
T Consensus 10 vG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EESTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 218
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.72 E-value=0.0014 Score=67.54 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEe
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP 37 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~ 37 (551)
+|++|||||||+|.|+|...+. .|+|.+.+.+
T Consensus 80 vG~pgaGKSTLln~L~~~~~~~-----~~~v~V~~~d 111 (349)
T 2www_A 80 SGPPGAGKSTFIEYFGKMLTER-----GHKLSVLAVD 111 (349)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEECC
T ss_pred EcCCCCCHHHHHHHHHHHhhhc-----CCeEEEEeec
Confidence 5999999999999999987554 4555554443
No 219
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.67 E-value=0.034 Score=53.92 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=31.7
Q ss_pred HhHHHHHHHHHh---hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecC
Q 008843 114 EKKRLSLACELI---ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD---GHTVICSIHQ 168 (551)
Q Consensus 114 erqRvsIa~~L~---~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~---g~tvi~~~H~ 168 (551)
++.+-.+.+++. .+++++++--+.+.++. ....+++.++++... +.++|+++|-
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEch
Confidence 444444555542 67777655544445543 445566777665422 5788888885
No 220
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.60 E-value=0.0035 Score=59.55 Aligned_cols=19 Identities=53% Similarity=0.770 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|||||||||+.+.|++.+
T Consensus 11 ~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999999865
No 221
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.49 E-value=0.088 Score=53.18 Aligned_cols=19 Identities=37% Similarity=0.719 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||.++++...
T Consensus 51 ~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp ESSSSSCHHHHHHHHHHHT
T ss_pred ECCCCccHHHHHHHHHHHc
Confidence 3999999999999999865
No 222
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.48 E-value=0.0055 Score=61.88 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=30.0
Q ss_pred hhCCceEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchhHHh
Q 008843 125 IASPSVIYADEPT-TGLDAFQAEKVME-ALRQLAQDGHTVICSIHQPRGSVYF 175 (551)
Q Consensus 125 ~~~p~illLDEPt-sGLD~~~~~~i~~-~L~~la~~g~tvi~~~H~~~~~i~~ 175 (551)
+.++++|++||.- ..++...+.+++. ++.....+++.+|++++.+..+...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 4578999999983 2445444444554 5655434567788888876655544
No 223
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.39 E-value=0.0041 Score=65.73 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMAS 22 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~ 22 (551)
+|||||||||||++|++...+.
T Consensus 32 ~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 32 IGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp ECSTTSSHHHHHHHHHHHTTC-
T ss_pred ECCCCCCHHHHHHHHHhhhccc
Confidence 5999999999999999987654
No 224
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.36 E-value=0.0074 Score=55.05 Aligned_cols=18 Identities=39% Similarity=0.804 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.|+|.
T Consensus 13 vG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp ECSTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999985
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.26 E-value=0.0046 Score=57.83 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAG 17 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g 17 (551)
+|+|||||||+.+.|++
T Consensus 7 ~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 49999999999999999
No 226
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.20 E-value=0.12 Score=53.24 Aligned_cols=75 Identities=17% Similarity=0.082 Sum_probs=44.8
Q ss_pred HHHHHHHHh--hCCceEEEeCCCCCCCHH-------------HHHHHHHHHHHH---H-hCCCEEEEEecCCch------
Q 008843 117 RLSLACELI--ASPSVIYADEPTTGLDAF-------------QAEKVMEALRQL---A-QDGHTVICSIHQPRG------ 171 (551)
Q Consensus 117 RvsIa~~L~--~~p~illLDEPtsGLD~~-------------~~~~i~~~L~~l---a-~~g~tvi~~~H~~~~------ 171 (551)
-..+++.++ .+++++++|+++.=.... .++.+.+.+++| + +.|.+||++.|-...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 345666664 579999999998865311 112344444444 3 458899988774221
Q ss_pred ---------hHHhhcccEEEEcCCeEEEe
Q 008843 172 ---------SVYFKFDDIVLLTEGKLVYA 191 (551)
Q Consensus 172 ---------~i~~~~D~v~lL~~G~iv~~ 191 (551)
.+...+|-++.++..+....
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~~~k~ 237 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIGAVKE 237 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEEEEES
T ss_pred CCcccCCCcceeeeccEEEEEEEeeeecc
Confidence 34556787777776554433
No 227
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.15 E-value=0.0067 Score=54.52 Aligned_cols=19 Identities=37% Similarity=0.709 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.++|..
T Consensus 9 vG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 9 IGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp ECSTTSSHHHHHHHHHCCS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.07 E-value=0.0059 Score=57.36 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=17.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+||||||||||.+.|+...+
T Consensus 18 ~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp ECCTTSCHHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhCc
Confidence 59999999999999998763
No 229
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.05 E-value=0.034 Score=49.15 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=29.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 008843 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (551)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~ 171 (551)
+..+|++||.- .|+...+..+++.|+.. ..+..+|+++..+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 44689999985 68888888888877332 224567777776543
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.02 E-value=0.0068 Score=56.01 Aligned_cols=34 Identities=38% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK 36 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~ 36 (551)
+|+||||||||++.|.+.+++.+ ..-|.+..++.
T Consensus 12 ~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~ 45 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHH 45 (174)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC
T ss_pred EeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCC
Confidence 49999999999999998764321 12466666554
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.01 E-value=0.0057 Score=66.74 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=25.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCE
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK 36 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~ 36 (551)
+||||+|||||+++|++...+. .|.|.++|.
T Consensus 114 ~Gp~GtGKTtlar~ia~~l~~~-----~~~i~~~~~ 144 (543)
T 3m6a_A 114 AGPPGVGKTSLAKSIAKSLGRK-----FVRISLGGV 144 (543)
T ss_dssp ESSSSSSHHHHHHHHHHHHTCE-----EEEECCCC-
T ss_pred ECCCCCCHHHHHHHHHHhcCCC-----eEEEEeccc
Confidence 4999999999999999988654 677776664
No 232
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.99 E-value=0.0069 Score=62.56 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHH
Q 008843 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACE 123 (551)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~ 123 (551)
.+++++..++++..+... .. .....++...|||-++.+.
T Consensus 128 p~~RR~flD~~l~~~~p~-y~------~~l~~y~~~l~qRn~lLk~ 166 (359)
T 2o5v_A 128 PSGRRAYLDSLLSRLSAR-YG------EQLSRYERTVSQRNAALRG 166 (359)
T ss_dssp HHHHHHHHHHHHHHHCHH-HH------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhcccHH-HH------HHHHHHHHHHHHHHHHHhh
Confidence 566777888887766541 11 1234688999999999884
No 233
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.94 E-value=0.0081 Score=56.72 Aligned_cols=18 Identities=39% Similarity=0.722 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|||||||||++++|.-.
T Consensus 29 ~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 29 IGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998643
No 234
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.93 E-value=0.0038 Score=64.53 Aligned_cols=20 Identities=45% Similarity=0.566 Sum_probs=17.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|+||+|||||++.|.|...
T Consensus 43 vG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 43 VGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp CCCTTSCHHHHHHHHTTCCC
T ss_pred EcCCCCCHHHHHHHHhCCCC
Confidence 69999999999999988744
No 235
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.92 E-value=0.0076 Score=56.30 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|+|||||||+.+.|++.+
T Consensus 24 ~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999864
No 236
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.86 E-value=0.0083 Score=56.09 Aligned_cols=19 Identities=47% Similarity=0.586 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|++.+
T Consensus 31 ~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHc
Confidence 5999999999999999865
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.79 E-value=0.0041 Score=58.80 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=24.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceee--EEEECCEe
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG--LLEVNGKP 37 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G--~i~i~g~~ 37 (551)
.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 31 ~G~~GsGKsT~~~~l~~~l~~~-----~g~~~~~~~~d~ 64 (211)
T 1m7g_A 31 TGLSASGKSTLAVELEHQLVRD-----RRVHAYRLDGDN 64 (211)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHH-----HCCCEEEECHHH
T ss_pred ECCCCCCHHHHHHHHHHHhccc-----cCCcEEEECChH
Confidence 4999999999999999987533 45 56666443
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.65 E-value=0.011 Score=53.30 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 7 ~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp ECSSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999864
No 239
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.62 E-value=0.01 Score=54.28 Aligned_cols=19 Identities=53% Similarity=0.697 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.++|..
T Consensus 8 vG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp ESCTTSSHHHHHHHHTCC-
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 240
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.55 E-value=0.097 Score=51.84 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.||+|+|||||.+.++..+.
T Consensus 73 ~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 73 TGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EECTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 39999999999999988753
No 241
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.48 E-value=0.082 Score=56.07 Aligned_cols=74 Identities=18% Similarity=0.055 Sum_probs=45.1
Q ss_pred CCChHHhHHHHHHHHHh--hCCc--eEEEeCCCC----C--CC-HHHHHHHHHHHHHHHh-CCCEEEEEecCCch-----
Q 008843 109 GISGGEKKRLSLACELI--ASPS--VIYADEPTT----G--LD-AFQAEKVMEALRQLAQ-DGHTVICSIHQPRG----- 171 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~--~~p~--illLDEPts----G--LD-~~~~~~i~~~L~~la~-~g~tvi~~~H~~~~----- 171 (551)
++|-.+-+ +.++.+. .+++ ++++|--.. + -+ .....++.+.|+.+++ .|.+||+++|-.+.
T Consensus 290 ~~s~~~i~--~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~ 367 (444)
T 3bgw_A 290 GQSVNYIW--SKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQ 367 (444)
T ss_dssp SCBHHHHH--HHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSS
T ss_pred CCCHHHHH--HHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccC
Confidence 45555533 2334443 3789 999996532 1 01 1233467778888885 48899999884321
Q ss_pred -------------hHHhhcccEEEEc
Q 008843 172 -------------SVYFKFDDIVLLT 184 (551)
Q Consensus 172 -------------~i~~~~D~v~lL~ 184 (551)
.+.+.+|-|+.|.
T Consensus 368 ~krp~lsdlr~Sg~ieq~aD~Vi~L~ 393 (444)
T 3bgw_A 368 DKRPMLSDLRESGQLEQDADIIEFLY 393 (444)
T ss_dssp CCCCCGGGCCSCSHHHHHCSEEEECC
T ss_pred CCCCchhhhhhhhhHHhhCCEEEEEe
Confidence 2566677777774
No 242
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.48 E-value=0.012 Score=53.87 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=18.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~ 21 (551)
+|++||||||+.+.|++.+++
T Consensus 11 ~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp ECCTTSSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhh
Confidence 499999999999999997643
No 243
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.36 E-value=0.014 Score=53.06 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.|++||||||+.+.|+..+.
T Consensus 9 ~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHHhcC
Confidence 49999999999999998764
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.36 E-value=0.014 Score=54.56 Aligned_cols=20 Identities=50% Similarity=0.758 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+||||||||||++.|....+
T Consensus 7 ~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhCC
Confidence 49999999999999987653
No 245
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.34 E-value=0.02 Score=59.72 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|+||+|||||+|+|+|.
T Consensus 28 VG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 28 VGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp ECCSSSSHHHHHHHHHC-
T ss_pred ECCCCCCHHHHHHHHHCC
Confidence 599999999999999997
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.10 E-value=0.009 Score=55.01 Aligned_cols=21 Identities=48% Similarity=0.561 Sum_probs=18.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~ 21 (551)
+|++||||||+.+.|+..+..
T Consensus 19 ~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHh
Confidence 499999999999999998753
No 247
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.09 E-value=0.015 Score=56.90 Aligned_cols=19 Identities=47% Similarity=0.662 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|+|||||||+.++|++.+
T Consensus 54 ~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 5999999999999999965
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.08 E-value=0.16 Score=50.99 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=41.0
Q ss_pred HHHHHHHHhh---CCceEEEeCCCCCCC--------HHH----HHHHHHHHHHHHh-CCCEEEEEecCCch---------
Q 008843 117 RLSLACELIA---SPSVIYADEPTTGLD--------AFQ----AEKVMEALRQLAQ-DGHTVICSIHQPRG--------- 171 (551)
Q Consensus 117 RvsIa~~L~~---~p~illLDEPtsGLD--------~~~----~~~i~~~L~~la~-~g~tvi~~~H~~~~--------- 171 (551)
-+..++.++. +++++++|.-+.=.. ... ..+++..|+++++ .|.+||++.|-...
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence 3444555663 589999999875321 111 2455666677664 57788877653211
Q ss_pred ------hHHhhcccEEEEcC
Q 008843 172 ------SVYFKFDDIVLLTE 185 (551)
Q Consensus 172 ------~i~~~~D~v~lL~~ 185 (551)
.+.+.+|.++.|+.
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEE
T ss_pred CCCCcHHHHhcCcEEEEEEe
Confidence 24456777777753
No 249
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.95 E-value=0.19 Score=53.05 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=38.7
Q ss_pred CCChHHhHHHHHHHHHhhCCceEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q 008843 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DGHTVICSI 166 (551)
Q Consensus 109 ~LSGGerqRvsIa~~L~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~~~ 166 (551)
.|+..+.+|+.-|...+.+.++.+.|+|. ++. .++...++++.+ .|..+|++-
T Consensus 264 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~---~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 264 QLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL---MEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp GCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH---HHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHcCCCEEEEc
Confidence 59999999999999888888899888764 332 445666666653 466666654
No 250
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.89 E-value=0.042 Score=50.27 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 26 vG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp ECCTTSCHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999998776643
No 251
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.83 E-value=0.0087 Score=61.26 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMAS 22 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~ 22 (551)
+|++|+|||||++.|++...+.
T Consensus 62 ~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 62 TGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp EECTTSCHHHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHHHhc
Confidence 5999999999999999987543
No 252
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.80 E-value=0.021 Score=51.96 Aligned_cols=19 Identities=53% Similarity=0.700 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|+..+
T Consensus 10 ~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 10 IGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHc
Confidence 4999999999999999864
No 253
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.59 E-value=0.022 Score=55.67 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+||||||||||.+.|++..
T Consensus 7 ~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHhcC
Confidence 5999999999999999865
No 254
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.53 E-value=0.025 Score=51.76 Aligned_cols=18 Identities=44% Similarity=0.732 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
.|++||||||+.+.|+..
T Consensus 10 ~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 255
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.48 E-value=0.014 Score=56.81 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=23.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS 38 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~ 38 (551)
+|+|||||||+.+.|+..+.. +.+.+++..+
T Consensus 38 ~G~~GsGKSTla~~L~~~l~~-------~~~~~~~D~~ 68 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQKEFQG-------NIVIIDGDSF 68 (253)
T ss_dssp ESCGGGTTHHHHHHHHHHTTT-------CCEEECGGGG
T ss_pred ECCCCCCHHHHHHHHHHhcCC-------CcEEEecHHH
Confidence 499999999999999987631 3456666543
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.48 E-value=0.028 Score=50.27 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVL 15 (551)
Q Consensus 1 lGpsGaGKSTLL~~L 15 (551)
.|++||||||+.+.|
T Consensus 7 ~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL 21 (179)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 499999999999999
No 257
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.43 E-value=0.073 Score=47.08 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp ECCTTSSHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999853
No 258
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.38 E-value=0.057 Score=48.35 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 15 ~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EECTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999999863
No 259
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.37 E-value=0.043 Score=48.56 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|++|+|||||++.+.|...
T Consensus 8 vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 8 LGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EESTTSSHHHHHHHHCCC--
T ss_pred ECCCCCCHHHHHHHHcCccc
Confidence 59999999999999998653
No 260
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.37 E-value=0.036 Score=51.40 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 31 vG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEETTSSHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999874
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.36 E-value=0.031 Score=50.53 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAG 17 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g 17 (551)
.|++||||||+.+.|+.
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 49999999999999987
No 262
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.33 E-value=0.26 Score=49.23 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=28.2
Q ss_pred CCceEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 008843 127 SPSVIYADEPTTGLD-AFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 127 ~p~illLDEPtsGLD-~~~~~~i~~~L~~la~~g~tvi~~~H~~~ 170 (551)
+++++++||.-. |. ......+.+.+.+.. .+..+|+++.++.
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 789999999843 44 555555666665543 3567778887754
No 263
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.33 E-value=0.031 Score=51.03 Aligned_cols=19 Identities=32% Similarity=0.407 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+-.+
T Consensus 9 ~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998854
No 264
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.31 E-value=0.031 Score=51.62 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHhc
Confidence 4999999999999999865
No 265
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.31 E-value=0.042 Score=50.56 Aligned_cols=18 Identities=44% Similarity=0.733 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 29 vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999984
No 266
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.29 E-value=0.029 Score=54.39 Aligned_cols=20 Identities=45% Similarity=0.831 Sum_probs=17.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.||+|+|||||+++|++...
T Consensus 51 ~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 51 VGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ECCTTSCHHHHHHHHHHHHT
T ss_pred ECcCCCCHHHHHHHHHHHcC
Confidence 49999999999999999753
No 267
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.11 E-value=0.026 Score=55.47 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchhHHhhcccE
Q 008843 136 PTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDI 180 (551)
Q Consensus 136 PtsGLD~~~~~~i~~~L~~la~~-g~tvi~~~H~~~~~i~~~~D~v 180 (551)
|||+++.....++.+.+.+..++ +.+..+..|.. .++...++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHH
Confidence 78888888777777777776643 33334455553 3455555544
No 268
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.09 E-value=0.031 Score=51.07 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 269
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.06 E-value=0.33 Score=50.13 Aligned_cols=19 Identities=42% Similarity=0.761 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||+|.++|+...
T Consensus 154 ~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 154 FGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp ESSTTSCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 3999999999999998864
No 270
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.05 E-value=0.032 Score=50.88 Aligned_cols=18 Identities=50% Similarity=0.625 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
.|++||||||+.+.|+..
T Consensus 17 ~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 17 TGTPGVGKTTLGKELASK 34 (180)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 271
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.94 E-value=0.14 Score=54.86 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=52.3
Q ss_pred cCCCCChHHhHHHHHHH--HHhh---------------CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 008843 106 KVRGISGGEKKRLSLAC--ELIA---------------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168 (551)
Q Consensus 106 ~~~~LSGGerqRvsIa~--~L~~---------------~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~ 168 (551)
..++.||||+|-.-+|. +++. .-.++++||. +-+|...+...+++++++ |.-+|+++-.
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~ 451 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE 451 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc
Confidence 36789999999644443 3332 1247999999 999999999999999976 7766676643
Q ss_pred CchhHHhhcccEEEEc
Q 008843 169 PRGSVYFKFDDIVLLT 184 (551)
Q Consensus 169 ~~~~i~~~~D~v~lL~ 184 (551)
.+....|.++.+-
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 3445567777664
No 272
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.88 E-value=0.088 Score=47.49 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 10 ~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999864
No 273
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.033 Score=50.89 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 54 vG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 54 AGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 274
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.81 E-value=0.034 Score=49.16 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 11 ~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp ECSTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 275
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.75 E-value=0.032 Score=53.62 Aligned_cols=21 Identities=48% Similarity=0.752 Sum_probs=18.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~ 21 (551)
.|++||||||+++.|+..+..
T Consensus 32 ~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp ECCTTSCHHHHHHHHHHHHTT
T ss_pred EcCCCCCHHHHHHHHHHHHhc
Confidence 499999999999999998753
No 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.73 E-value=0.032 Score=51.20 Aligned_cols=19 Identities=47% Similarity=0.581 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 11 TGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998754
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.65 E-value=0.041 Score=51.85 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAG 17 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g 17 (551)
.|++||||||+.+.|+.
T Consensus 10 ~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999987
No 278
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.65 E-value=0.038 Score=50.77 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|++|||||||++.|+..++
T Consensus 10 ~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp ECCTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhhH
Confidence 49999999999999998764
No 279
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.59 E-value=0.042 Score=48.97 Aligned_cols=19 Identities=42% Similarity=0.788 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 10 ~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC-
T ss_pred ECCCCccHHHHHHHHhcCC
Confidence 5999999999999999864
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.58 E-value=0.039 Score=50.39 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.|++||||||+.+.|+..+.
T Consensus 7 ~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EECTTSCHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999998653
No 281
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.57 E-value=0.039 Score=48.45 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 7 ~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 7 VGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp ECCTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999864
No 282
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.56 E-value=0.099 Score=48.04 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 20 ~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999998764
No 283
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.52 E-value=0.028 Score=58.35 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=37.0
Q ss_pred CCceEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 008843 127 SPSVIYADEPTTGLD---AFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (551)
Q Consensus 127 ~p~illLDEPtsGLD---~~~~~~i~~~L~~la~~g~tvi~~~H~~~~ 171 (551)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 478999999877774 667777888888888889999999999864
No 284
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.50 E-value=0.1 Score=47.36 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|++..
T Consensus 27 vG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 285
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.49 E-value=0.04 Score=48.52 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 10 ~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999999764
No 286
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.46 E-value=0.043 Score=50.48 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++||||||+.+.|+..
T Consensus 16 ~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999885
No 287
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.45 E-value=0.034 Score=48.78 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EESTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999998864
No 288
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.44 E-value=0.042 Score=48.35 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998754
No 289
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.42 E-value=0.049 Score=52.67 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+||||||+.+.|+..+
T Consensus 15 ~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999754
No 290
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.36 E-value=0.047 Score=48.47 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 8 vG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 8 VGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp ECSTTSSHHHHHHHHHCC-
T ss_pred ECCCCCCHHHHHHHHHhcc
Confidence 5999999999999998754
No 291
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.28 E-value=0.045 Score=48.48 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 12 ~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999875
No 292
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.25 E-value=0.1 Score=46.88 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 12 ~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999854
No 293
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.25 E-value=0.12 Score=46.48 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 24 ~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhhCC
Confidence 5999999999999999754
No 294
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.24 E-value=0.045 Score=48.38 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998765
No 295
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.23 E-value=0.024 Score=53.07 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=17.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.|++||||||+.+.|+..+.
T Consensus 6 ~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHH
Confidence 49999999999999998764
No 296
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.23 E-value=0.047 Score=54.36 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|||||||||+.+.|+...
T Consensus 39 ~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp ECCTTSCTHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 297
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.22 E-value=0.044 Score=56.60 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=15.2
Q ss_pred CCCCCCcHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAG 17 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g 17 (551)
.|||||||||+|.+|.=
T Consensus 31 ~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 31 IGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999873
No 298
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.22 E-value=0.044 Score=49.09 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 15 ~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp ECCTTSCHHHHHHHHCSCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 299
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.21 E-value=0.046 Score=48.47 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 12 ~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp ECCTTSCHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999764
No 300
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.17 E-value=0.055 Score=49.72 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 3999999999999999865
No 301
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.15 E-value=0.091 Score=46.24 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp ECSTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998754
No 302
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.11 E-value=0.076 Score=49.07 Aligned_cols=18 Identities=44% Similarity=0.741 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.++|.
T Consensus 29 vG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 29 VGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp ECSTTSSHHHHHHHTCCE
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 699999999999999864
No 303
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.06 E-value=0.049 Score=48.73 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 13 ~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998764
No 304
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.04 E-value=0.049 Score=48.79 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999998864
No 305
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.02 E-value=0.052 Score=53.62 Aligned_cols=19 Identities=42% Similarity=0.786 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||+|.|+|..
T Consensus 9 vG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp ECCTTSSHHHHHHHHHCCC
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999964
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.01 E-value=0.053 Score=48.53 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp ESCTTTTHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999854
No 307
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.92 E-value=0.053 Score=50.86 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999997653
No 308
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.92 E-value=0.031 Score=58.90 Aligned_cols=33 Identities=27% Similarity=0.177 Sum_probs=26.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEeC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS 38 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~~ 38 (551)
+|+|||||||++..|++.+.+. .|.|.+.+.+.
T Consensus 104 ~G~~GsGKTT~~~~LA~~l~~~-----g~~Vllvd~D~ 136 (425)
T 2ffh_A 104 VGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAADT 136 (425)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEECCS
T ss_pred ECCCCCCHHHHHHHHHHHHHHc-----CCeEEEeeccc
Confidence 4999999999999999998764 46676655543
No 309
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.89 E-value=0.11 Score=50.83 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|||||||+|.|+|..
T Consensus 7 vG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 7 IGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EESTTSSHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999974
No 310
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.87 E-value=0.39 Score=48.58 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=35.0
Q ss_pred hHHhHHHHHHHHH--h--hCCceEEEeCCCCCC-----CH----------HHHHHHHHHHHHH---H-hCCCEEEEEecC
Q 008843 112 GGEKKRLSLACEL--I--ASPSVIYADEPTTGL-----DA----------FQAEKVMEALRQL---A-QDGHTVICSIHQ 168 (551)
Q Consensus 112 GGerqRvsIa~~L--~--~~p~illLDEPtsGL-----D~----------~~~~~i~~~L~~l---a-~~g~tvi~~~H~ 168 (551)
-+|+..+.++..+ + .+|++++.|--++=. +. ..++.+-+.|++| + +.|.++|++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3455556666666 3 369999999876542 11 1233444555553 3 568899998886
No 311
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.86 E-value=0.042 Score=50.03 Aligned_cols=18 Identities=50% Similarity=0.735 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 22 vG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EESTTSSHHHHHHHHCCS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999886
No 312
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.81 E-value=0.045 Score=48.46 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EESTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999999864
No 313
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.80 E-value=0.052 Score=52.02 Aligned_cols=19 Identities=37% Similarity=0.705 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|++.+
T Consensus 22 ~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 22 DGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp ECSSCSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999999853
No 314
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.80 E-value=0.065 Score=49.74 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.|++||||||+.+.|+..+.
T Consensus 10 ~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 10 EGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp ECCTTSSHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHHh
Confidence 49999999999999998664
No 315
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.79 E-value=0.046 Score=49.94 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 29 ~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC-
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999864
No 316
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.74 E-value=0.057 Score=54.73 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=18.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~ 21 (551)
.||+|+||||+++++++.+.+
T Consensus 52 ~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp ECSSSSSHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHcC
Confidence 499999999999999998643
No 317
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.73 E-value=0.047 Score=49.62 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 29 ~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEBTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHHcCc
Confidence 5999999999999999874
No 318
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.71 E-value=0.068 Score=49.43 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 10 ~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp ECCTTSSHHHHHHHHHHTS
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4999999999999999876
No 319
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.70 E-value=0.049 Score=50.30 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
.|++||||||+.+.|+..
T Consensus 14 ~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EECTTSCHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHC
Confidence 489999999999999985
No 320
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.66 E-value=0.057 Score=47.68 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 12 ~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999753
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.61 E-value=0.07 Score=47.93 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 8 ~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 8 VGARGCGMTTVGRELARAL 26 (173)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 322
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.61 E-value=0.058 Score=49.11 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 13 ~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 13 LGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999999874
No 323
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=91.61 E-value=0.078 Score=54.67 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|.+|+|||||+|.|+|..
T Consensus 8 VG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 8 VGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp ECCTTSSHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999943
No 324
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.58 E-value=0.066 Score=47.92 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 12 ~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp ECCTTSSHHHHHHHHHGGG
T ss_pred ECcCCCCHHHHHHHHHhCc
Confidence 5999999999999999864
No 325
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.56 E-value=0.059 Score=47.79 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 13 ~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998753
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.55 E-value=0.062 Score=50.46 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998653
No 327
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.51 E-value=0.12 Score=47.14 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 29 vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 328
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.50 E-value=0.15 Score=46.50 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 27 vG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCcHHHHHHHHHhCC
Confidence 5999999999999998754
No 329
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.46 E-value=0.14 Score=46.91 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 26 ~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 26 VGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp ECSTTSSHHHHHHHHHC--
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999764
No 330
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.46 E-value=0.16 Score=46.50 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 34 ~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 34 FGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999864
No 331
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.45 E-value=0.069 Score=48.54 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 008843 1 MGPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~ 21 (551)
+|++|+|||||++.+.|....
T Consensus 20 vG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 20 YGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp ECSTTSSHHHHHHHHHHTSCG
T ss_pred ECCCCCCHHHHHHHHHhhccc
Confidence 599999999999999997643
No 332
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.43 E-value=0.053 Score=49.11 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 7 ~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEBTTSSHHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHhCcC
Confidence 5999999999999999864
No 333
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.37 E-value=0.11 Score=48.37 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 32 vG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EESTTSSHHHHHHHHHHSS
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999988754
No 334
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.35 E-value=0.064 Score=47.27 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 6 ~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999874
No 335
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.34 E-value=0.064 Score=48.54 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 17 ~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999854
No 336
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.31 E-value=0.18 Score=45.33 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 24 ~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999764
No 337
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.31 E-value=0.072 Score=49.36 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 8 ~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 8 DGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999999864
No 338
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.26 E-value=0.026 Score=56.68 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=24.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCcceeeEEEECCEe
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP 37 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~G~i~i~g~~ 37 (551)
+|++|+||||++..|++...+. .|.|.+.+.+
T Consensus 104 ~G~~G~GKTT~~~~la~~~~~~-----g~~v~l~~~D 135 (297)
T 1j8m_F 104 VGVQGTGKTTTAGKLAYFYKKK-----GFKVGLVGAD 135 (297)
T ss_dssp ECSSCSSTTHHHHHHHHHHHHT-----TCCEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEecC
Confidence 4999999999999999987643 3555554433
No 339
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.24 E-value=0.065 Score=48.96 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 31 ~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp ESSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 340
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.18 E-value=0.068 Score=47.70 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 21 ~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.18 E-value=0.062 Score=49.32 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 15 ~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.17 E-value=0.083 Score=47.25 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp ESCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 343
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.14 E-value=0.069 Score=47.87 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|++|+|||||++.+.+...
T Consensus 16 ~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp ECSTTSSHHHHHHHHHHSCC
T ss_pred ECcCCCCHHHHHHHHHhCCC
Confidence 59999999999999988643
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.12 E-value=0.061 Score=50.84 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 11 SGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.12 E-value=0.083 Score=48.23 Aligned_cols=19 Identities=47% Similarity=0.452 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998865
No 346
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.11 E-value=0.068 Score=49.92 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 18 ~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 347
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.08 E-value=0.086 Score=48.11 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
.|++||||||+.+.|+..
T Consensus 9 ~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 9 LGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 348
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.03 E-value=0.14 Score=45.80 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 13 vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp ECCGGGCHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999998753
No 349
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.00 E-value=0.074 Score=47.73 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 18 ~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp ECCTTSCHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 350
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.97 E-value=0.13 Score=47.47 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EESTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 351
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.90 E-value=0.063 Score=47.92 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 20 ~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998753
No 352
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.87 E-value=0.044 Score=49.43 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 24 ~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEETTSSHHHHHHHTCCS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999853
No 353
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=90.86 E-value=0.061 Score=52.85 Aligned_cols=19 Identities=47% Similarity=0.546 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||+|.|.|..
T Consensus 14 vG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 14 VGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EECTTSSHHHHHHHHSSSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998864
No 354
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.84 E-value=0.082 Score=48.21 Aligned_cols=19 Identities=47% Similarity=0.609 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|+..+
T Consensus 8 ~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998754
No 355
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.76 E-value=0.08 Score=47.96 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 24 ~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp ECSTTSSHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999865
No 356
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.74 E-value=2.1 Score=45.67 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=43.9
Q ss_pred HHHHHHHHh--hCCceEEEeCCCCCC-------CH-HHHHHHHHHHHHHHh-CCCEEEEEecCCc---------------
Q 008843 117 RLSLACELI--ASPSVIYADEPTTGL-------DA-FQAEKVMEALRQLAQ-DGHTVICSIHQPR--------------- 170 (551)
Q Consensus 117 RvsIa~~L~--~~p~illLDEPtsGL-------D~-~~~~~i~~~L~~la~-~g~tvi~~~H~~~--------------- 170 (551)
-++.++.++ .+|+++++|=-+. + +. ....++++.|+++++ .|.+||++.|-..
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l 420 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI 420 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence 344455554 4699999995432 2 11 233467788888885 4889999988642
Q ss_pred ------hhHHhhcccEEEEc
Q 008843 171 ------GSVYFKFDDIVLLT 184 (551)
Q Consensus 171 ------~~i~~~~D~v~lL~ 184 (551)
..+.+.+|.|+.|.
T Consensus 421 ~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 421 TDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SSCSSSSHHHHHCSEEEEEE
T ss_pred hhhccchHhhecCcEEEEEE
Confidence 13456689998884
No 357
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.71 E-value=0.083 Score=52.93 Aligned_cols=19 Identities=47% Similarity=0.643 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||+|.|.|..
T Consensus 13 vG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp ECSTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999964
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.67 E-value=0.081 Score=49.23 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 16 ~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4899999999999998754
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.67 E-value=0.073 Score=50.55 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 13 ~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998753
No 360
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.58 E-value=0.084 Score=48.64 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 361
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.54 E-value=0.1 Score=46.84 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||++.++...
T Consensus 49 ~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998865
No 362
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.54 E-value=0.084 Score=48.10 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 22 ~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 363
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.53 E-value=0.084 Score=48.07 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 28 vG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.52 E-value=0.072 Score=48.13 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|++|+|||||++.+.+...
T Consensus 16 ~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EESTTSSHHHHHHHHHHSSC
T ss_pred ECCCCCCHHHHHHHHHcCCC
Confidence 59999999999999997643
No 365
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.51 E-value=0.16 Score=52.03 Aligned_cols=125 Identities=17% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCccee----eEEEEC----CEeCCc--c-cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 008843 1 MGPSGSGKTTLLNVLAGQLMASPRLHLS----GLLEVN----GKPSSN--K-AYKFAYVRQEDLFFSQLTVRETLSLAAE 69 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~~~~~~~~~----G~i~i~----g~~~~~--~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 69 (551)
+||||||||||+|+|+|++++. + |++.++ |.+... . ...+++++|+...++ .|+.||+.+..
T Consensus 176 vG~nGsGKSTLlk~L~gl~~~~-----~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~-~t~~~nl~~~~- 248 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAVFNTT-----SAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA-VRHSHKIAFID- 248 (365)
T ss_dssp ECCTTSHHHHHHHHHHHHTTCE-----EECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH-HHHCSSEEEES-
T ss_pred ECCCCCCHHHHHHHHHHHhCCC-----cchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHH-HhccCCEEEEe-
Confidence 5999999999999999998876 5 666653 333211 0 123677776543322 34445443210
Q ss_pred cCCCCCCCHHH---------HHHHHHHHHHHcCCCc-ccCc---cccCCcCCCCChHHhHHHHHHHHH---hh--CCceE
Q 008843 70 LQLPEILSVEE---------RDEYVNSLLFKLGLVS-CADS---NVGDAKVRGISGGEKKRLSLACEL---IA--SPSVI 131 (551)
Q Consensus 70 l~~~~~~~~~~---------~~~~v~~~l~~lgL~~-~~~~---~vg~~~~~~LSGGerqRvsIa~~L---~~--~p~il 131 (551)
....... ....+...+...+..- ..|. +.. .....+|+||+||..++++| .. +++++
T Consensus 249 ----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~-~~g~~~sld~~~r~~l~~~l~~l~~~~~~~il 323 (365)
T 1lw7_A 249 ----TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV-DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYI 323 (365)
T ss_dssp ----SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC------------CCSHHHHHHHHHHHHHGGGCCCE
T ss_pred ----CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc-cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEE
Confidence 0000000 0111223332222211 0011 110 11235899999999999999 77 89999
Q ss_pred EEeCCC
Q 008843 132 YADEPT 137 (551)
Q Consensus 132 lLDEPt 137 (551)
++|||+
T Consensus 324 ilde~~ 329 (365)
T 1lw7_A 324 EIESPS 329 (365)
T ss_dssp EEECSS
T ss_pred EeCCCC
Confidence 999997
No 366
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.51 E-value=0.17 Score=46.84 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 31 vG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 31 VGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EECTTSSHHHHHHHHHHSS
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.46 E-value=0.07 Score=48.41 Aligned_cols=19 Identities=42% Similarity=0.587 Sum_probs=12.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp ECCC----CHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999998754
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.39 E-value=0.091 Score=48.28 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 18 ~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.37 E-value=0.096 Score=48.59 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 26 ~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.35 E-value=0.096 Score=49.40 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|+..+
T Consensus 10 ~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998754
No 371
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.33 E-value=0.09 Score=47.28 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 11 ~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998653
No 372
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.31 E-value=0.088 Score=54.05 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.++|++.+
T Consensus 30 ~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 30 VGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 5999999999999999975
No 373
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.31 E-value=0.19 Score=46.36 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 31 vG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 31 VGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EESTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999999864
No 374
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.30 E-value=0.099 Score=48.13 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp ECSTTSSHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 375
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.29 E-value=0.21 Score=46.69 Aligned_cols=19 Identities=47% Similarity=0.700 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 40 vG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 40 VGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EECTTSSHHHHHHHHHC--
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999753
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.26 E-value=0.098 Score=49.69 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+-.+
T Consensus 6 ~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 377
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.19 E-value=0.09 Score=48.20 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 32 vG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp ECSTTSSHHHHHHHHCC--
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998854
No 378
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.18 E-value=0.096 Score=47.69 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 26 ~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998753
No 379
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.16 E-value=0.081 Score=48.33 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 14 vG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EECTTSSHHHHHHHHHHSC
T ss_pred ECCCCCcHHHHHHHHHcCC
Confidence 5999999999999999853
No 380
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.14 E-value=0.1 Score=50.94 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|+|..
T Consensus 11 vG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 11 AGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp ECCTTSSHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999853
No 381
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.13 E-value=0.087 Score=51.01 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.|..
T Consensus 28 vG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 28 VGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EECTTSCHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999864
No 382
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.10 E-value=0.081 Score=48.02 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 13 ~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 383
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.05 E-value=0.27 Score=46.30 Aligned_cols=18 Identities=50% Similarity=0.877 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.|.
T Consensus 43 vG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp ECCTTSSHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 699999999999999974
No 384
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.00 E-value=0.12 Score=47.90 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 21 ~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998653
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.98 E-value=0.1 Score=48.62 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 15 ~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999754
No 386
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.96 E-value=0.096 Score=54.14 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||+|.|++..
T Consensus 7 VG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 7 VGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp ECCSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999863
No 387
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.95 E-value=0.54 Score=57.48 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=45.4
Q ss_pred HHHHHHHHHh--hCCceEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-hCCCEEEEEecC--------
Q 008843 116 KRLSLACELI--ASPSVIYADEPTTGLD-A------------FQAEKVMEALRQL---A-QDGHTVICSIHQ-------- 168 (551)
Q Consensus 116 qRvsIa~~L~--~~p~illLDEPtsGLD-~------------~~~~~i~~~L~~l---a-~~g~tvi~~~H~-------- 168 (551)
+-...++.++ .+|+++++|+...=.. . ...+++.+.+++| + +.|.+||++.|-
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 3444555444 5799999999887552 1 1233455555554 4 468899998883
Q ss_pred --C-----chhHHhhcccEEEEcCCe
Q 008843 169 --P-----RGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 169 --~-----~~~i~~~~D~v~lL~~G~ 187 (551)
| +..+.+.+|.++.+++++
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 2 124667788888886443
No 388
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.95 E-value=0.099 Score=47.74 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 27 ~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp ESSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 389
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.92 E-value=0.087 Score=48.24 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 29 vG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EECTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 390
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.90 E-value=0.1 Score=47.45 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 12 ~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 391
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.90 E-value=0.1 Score=46.79 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998753
No 392
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.83 E-value=0.096 Score=52.17 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||+|.|+|..
T Consensus 30 vG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 30 VGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EECSSSSHHHHHHHHHTSC
T ss_pred EcCCCCCHHHHHHHHHCCC
Confidence 5999999999999999975
No 393
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.83 E-value=0.1 Score=49.30 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 35 vG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 35 SGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp ECSTTSSHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999885
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.81 E-value=0.094 Score=49.28 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 395
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.80 E-value=0.11 Score=50.29 Aligned_cols=19 Identities=47% Similarity=0.882 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||.++|++..
T Consensus 50 ~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 50 VGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp BCSSCSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 4999999999999999864
No 396
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.80 E-value=0.096 Score=51.58 Aligned_cols=19 Identities=53% Similarity=0.763 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|||||||+|.|+|..
T Consensus 9 vG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EECTTSSHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 397
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.76 E-value=0.11 Score=47.94 Aligned_cols=18 Identities=50% Similarity=0.877 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.|.
T Consensus 12 vG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999999973
No 398
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.68 E-value=0.056 Score=50.63 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.|..
T Consensus 35 ~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 35 AGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EESCHHHHHHHHHHHTTCS
T ss_pred EcCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 399
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.66 E-value=0.092 Score=48.47 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|++|+|||||++.+.+...
T Consensus 30 vG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EESTTSSHHHHHHHHHHSCC
T ss_pred ECCCCcCHHHHHHHHHhCCC
Confidence 59999999999999998653
No 400
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.66 E-value=0.11 Score=47.18 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 21 ~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 401
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.64 E-value=0.11 Score=47.35 Aligned_cols=19 Identities=47% Similarity=0.581 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 28 ~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999754
No 402
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.61 E-value=0.11 Score=47.44 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 23 ~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 23 CGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp ECCTTSCHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 403
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.61 E-value=0.12 Score=51.25 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++||||||+.+.|+..
T Consensus 8 ~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 8 IGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999999873
No 404
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.58 E-value=0.12 Score=49.91 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+||||||+.+.|+..+
T Consensus 35 ~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998643
No 405
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.57 E-value=0.1 Score=47.36 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 22 ~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999964
No 406
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.57 E-value=0.12 Score=51.90 Aligned_cols=19 Identities=47% Similarity=0.669 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||+|.|.|..
T Consensus 16 vG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 16 VGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp ECSTTSSHHHHHHHHHTSC
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999964
No 407
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.55 E-value=0.12 Score=48.09 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 31 vG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp ESCTTSSHHHHHHHHHCSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 408
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.47 E-value=0.11 Score=48.11 Aligned_cols=19 Identities=32% Similarity=0.636 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 31 ~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EESTTSSHHHHHHHHHC--
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999998754
No 409
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.47 E-value=0.14 Score=49.97 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 10 ~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4999999999999999764
No 410
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.47 E-value=0.11 Score=47.93 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 26 ~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp ECSTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999754
No 411
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.47 E-value=0.11 Score=47.69 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|++|+|||||++.+.+...
T Consensus 26 vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 26 MGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EESTTSSHHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHhcCC
Confidence 59999999999999999654
No 412
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.43 E-value=0.099 Score=48.97 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|++..
T Consensus 36 ~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 36 MGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EECTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 5999999999999998854
No 413
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.42 E-value=0.11 Score=47.72 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 34 ~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp ESSTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999999864
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.41 E-value=0.099 Score=47.75 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 29 ~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EESTTSSHHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHhcCC
Confidence 5999999999999999854
No 415
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.40 E-value=0.082 Score=48.19 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 27 ~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 27 LGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EECTTSSHHHHHHHTSCGG
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999865
No 416
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.30 E-value=0.096 Score=47.38 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 27 ~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 27 VGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEETTSSHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999853
No 417
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.29 E-value=0.15 Score=45.73 Aligned_cols=19 Identities=42% Similarity=0.545 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|+.||||||+.+.|+..+
T Consensus 13 ~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 418
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.13 E-value=0.12 Score=46.49 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.||+|+|||||++.++....
T Consensus 49 ~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp ESCGGGCHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999988753
No 419
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.11 E-value=0.27 Score=46.12 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=52.9
Q ss_pred hHHHHHHHHHh--hCCceEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchhHHhhcccEEEEcC
Q 008843 115 KKRLSLACELI--ASPSVIYADEPTT--GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTE 185 (551)
Q Consensus 115 rqRvsIa~~L~--~~p~illLDEPts--GLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 185 (551)
++.+.-++..+ .+.++++|||.+. .++-....++++.|.+ +-++..||+|...+..++.+.+|-|.-|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 44556666677 5579999999976 2344445567777764 234689999999999999999999998865
No 420
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.98 E-value=0.13 Score=47.79 Aligned_cols=19 Identities=37% Similarity=0.356 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 13 vG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998754
No 421
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.93 E-value=0.16 Score=47.35 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=29.9
Q ss_pred hCCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 008843 126 ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (551)
Q Consensus 126 ~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~ 170 (551)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7777776666666432 23567888888754
No 422
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.82 E-value=0.14 Score=50.27 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=18.0
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|.+|+|||||+|.|.|...
T Consensus 105 vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 105 VGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EESTTSSHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHhcccc
Confidence 59999999999999999754
No 423
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.81 E-value=0.12 Score=51.04 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.|..
T Consensus 32 vG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 32 VGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEBTTSCHHHHHHHHHTSC
T ss_pred EeCCCCCHHHHHHHHHCCC
Confidence 5999999999999999975
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.74 E-value=0.15 Score=50.48 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=23.6
Q ss_pred HHHhhCC-ceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008843 122 CELIASP-SVIYADEPTTGLDAFQAEKVMEALRQL 155 (551)
Q Consensus 122 ~~L~~~p-~illLDEPtsGLD~~~~~~i~~~L~~l 155 (551)
.++...| .++++||. ..|++.....+++.|.+-
T Consensus 113 ~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 113 EAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred HHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 3344344 79999998 567888888888877653
No 425
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.68 E-value=2.5 Score=44.47 Aligned_cols=20 Identities=45% Similarity=0.544 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|++|+||||+...|+..+.
T Consensus 106 vG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 106 VGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp ECCTTSSHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHHH
Confidence 49999999999999998664
No 426
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.63 E-value=0.13 Score=50.32 Aligned_cols=19 Identities=37% Similarity=0.711 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||+|.|.|..
T Consensus 45 vG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 45 MGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EESTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999864
No 427
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.58 E-value=0.095 Score=47.22 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=5.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp ECCCCC-------------
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999998753
No 428
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=88.47 E-value=0.14 Score=49.94 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.|..
T Consensus 42 vG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 42 LGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EECTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999965
No 429
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.46 E-value=0.13 Score=48.09 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 34 vG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 34 VGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 430
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.36 E-value=0.18 Score=48.74 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 28 ~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998854
No 431
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.34 E-value=0.094 Score=48.18 Aligned_cols=18 Identities=22% Similarity=0.600 Sum_probs=0.7
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 26 ~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 26 VGEATVGKSALISMFTSK 43 (208)
T ss_dssp C-----------------
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 699999999999999876
No 432
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.28 E-value=0.56 Score=52.96 Aligned_cols=19 Identities=47% Similarity=0.844 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||+|.++|+...
T Consensus 527 ~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 527 LGPTGVGKTELARALAESI 545 (758)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999875
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.27 E-value=0.14 Score=48.23 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 434
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.21 E-value=0.19 Score=46.84 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
.|++||||||+.+.|+..
T Consensus 18 tG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 18 TGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999999874
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.19 E-value=0.17 Score=48.24 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|+..+
T Consensus 22 ~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 436
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.11 E-value=0.13 Score=47.19 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 35 ~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 35 VGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EESTTSSHHHHHHHHCSS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999764
No 437
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.08 E-value=0.097 Score=52.16 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=13.3
Q ss_pred CCCCCcHHHHHHHHHcCc
Q 008843 2 GPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~ 19 (551)
||+||||||+.+.|+..+
T Consensus 12 G~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 12 GSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCC---CCTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 438
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.87 E-value=0.18 Score=47.56 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+||+||||+|.-+.|+-..
T Consensus 6 ~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 6 LGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999998754
No 439
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.84 E-value=0.18 Score=50.63 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=31.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 008843 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (551)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~~~ 171 (551)
+++++++|| ...|+......+.+.+.+... ...+|++++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence 567999999 778998888888888776543 3456667776653
No 440
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=87.80 E-value=0.091 Score=49.04 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 17 vG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 17 IGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp ECCTTSSHHHHHCBCTTCS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998754
No 441
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.61 E-value=0.16 Score=46.38 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 24 ~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EECTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999763
No 442
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.35 E-value=0.23 Score=45.66 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 008843 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169 (551)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~~ 169 (551)
++.++++||. ..++......+.+.+.+. ..+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6889999996 446666666666666553 2345667777665
No 443
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.33 E-value=0.19 Score=49.62 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHHc
Q 008843 1 MGPSGSGKTTLLNVLAG 17 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g 17 (551)
.|++||||||+.+.|+.
T Consensus 81 ~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 81 TGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999983
No 444
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=87.29 E-value=0.19 Score=47.19 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 19 ~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp ESCTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 445
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.94 E-value=0.25 Score=46.84 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=17.8
Q ss_pred CCCCCcHHHHHHHHHcCcCC
Q 008843 2 GPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~~ 21 (551)
|++||||||+.+.|+..+..
T Consensus 13 G~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 13 GPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CSTTSSHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 446
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.88 E-value=0.23 Score=47.39 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+||+||||+|.-+.|+-.+
T Consensus 35 lGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 35 LGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp ECCTTCCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999998754
No 447
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=86.85 E-value=0.48 Score=43.76 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 36 vG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 36 VGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999998643
No 448
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=86.80 E-value=0.13 Score=46.81 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 28 ~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 28 LGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEETTSSHHHHHHHTCCS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999754
No 449
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=86.70 E-value=0.19 Score=46.49 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 35 vG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 35 VGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EECTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhhCC
Confidence 5999999999999998754
No 450
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.63 E-value=0.23 Score=50.26 Aligned_cols=19 Identities=53% Similarity=0.788 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+||+|||||||-+.|+...
T Consensus 11 ~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 11 MGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 5999999999999999865
No 451
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.61 E-value=0.19 Score=47.21 Aligned_cols=19 Identities=53% Similarity=0.758 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++-+++..
T Consensus 44 vG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 5999999999999998754
No 452
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.57 E-value=0.24 Score=46.71 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+||+|+|||||...|+.+.
T Consensus 40 ~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 40 TGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ECCCTTTTHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 5999999999999998863
No 453
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=86.48 E-value=0.23 Score=46.53 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 33 vG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 33 VGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999998754
No 454
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.24 E-value=4.9 Score=49.26 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=44.4
Q ss_pred HHHHHHh--hCCceEEEeCCCCCCCH-------------HHHHHHHHHHHHH---H-hCCCEEEEEecCCc---------
Q 008843 119 SLACELI--ASPSVIYADEPTTGLDA-------------FQAEKVMEALRQL---A-QDGHTVICSIHQPR--------- 170 (551)
Q Consensus 119 sIa~~L~--~~p~illLDEPtsGLD~-------------~~~~~i~~~L~~l---a-~~g~tvi~~~H~~~--------- 170 (551)
.+++.++ .+|+++++|..+.=... ..++.+.+.+++| + +.|.+||++.|...
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4555554 47999999999876531 1223444555555 3 46889999987522
Q ss_pred ------hhHHhhcccEEEEcCCe
Q 008843 171 ------GSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 171 ------~~i~~~~D~v~lL~~G~ 187 (551)
..+.+.+|-++.+...+
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccCCCCcceeeeCCEEEEEEecc
Confidence 24567789888876544
No 455
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.20 E-value=1.1 Score=55.71 Aligned_cols=71 Identities=18% Similarity=0.119 Sum_probs=45.8
Q ss_pred HHHHHHHHh--hCCceEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-hCCCEEEEEecCCch------
Q 008843 117 RLSLACELI--ASPSVIYADEPTTGLD-A------------FQAEKVMEALRQL---A-QDGHTVICSIHQPRG------ 171 (551)
Q Consensus 117 RvsIa~~L~--~~p~illLDEPtsGLD-~------------~~~~~i~~~L~~l---a-~~g~tvi~~~H~~~~------ 171 (551)
-+.+++.++ .+|+++++|.-++=.. . ..++++.+.|++| + +.|.+||++.|--..
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 345666665 4799999999876542 1 1234455666666 4 458899998874221
Q ss_pred ---------hHHhhcccEEEEcCCe
Q 008843 172 ---------SVYFKFDDIVLLTEGK 187 (551)
Q Consensus 172 ---------~i~~~~D~v~lL~~G~ 187 (551)
.+.+.+|.++.|+...
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEecc
Confidence 3567788888886544
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.08 E-value=0.23 Score=52.00 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|+...
T Consensus 264 ~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp ESCTTSSHHHHHHHHTGGG
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999998753
No 457
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.04 E-value=0.29 Score=47.64 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||.++++...
T Consensus 70 ~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 3999999999999999853
No 458
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.03 E-value=0.38 Score=49.00 Aligned_cols=19 Identities=42% Similarity=0.670 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+||+|||||||-..|+..+
T Consensus 46 ~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 46 MGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp ECSTTSSHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHHHC
Confidence 5999999999999999875
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.96 E-value=0.26 Score=47.19 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=16.7
Q ss_pred CCCCCcHHHHHHHHHcCc
Q 008843 2 GPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~ 19 (551)
|+.||||||+.+.|+..+
T Consensus 9 G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 9 GNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp ECTTSSHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHc
Confidence 899999999999999875
No 460
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=85.93 E-value=0.21 Score=46.22 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.+.+..
T Consensus 15 ~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998754
No 461
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.74 E-value=0.27 Score=50.14 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|||||||.+.|+..+
T Consensus 13 ~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 13 VGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCcCcHHHHHHHHHHHc
Confidence 4999999999999999865
No 462
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.72 E-value=0.24 Score=47.50 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=14.2
Q ss_pred CCCCCcHHHHHHHHHcCcC
Q 008843 2 GPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~ 20 (551)
|++||||||+.+.|+..+.
T Consensus 32 G~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 32 GIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCC---CHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988763
No 463
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=85.86 E-value=0.15 Score=46.96 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 36 ~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 36 VGDGAVGKTCLLISYTTN 53 (204)
Confidence 699999999999988753
No 464
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=85.65 E-value=0.31 Score=52.08 Aligned_cols=19 Identities=53% Similarity=0.739 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||+|.|+|..
T Consensus 239 vG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 239 AGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp ECCTTSSHHHHHHHCC---
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999863
No 465
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.61 E-value=0.25 Score=49.02 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=16.8
Q ss_pred CCCCCcHHHHHHHHHcCc
Q 008843 2 GPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~ 19 (551)
||+|+|||+|.++|+...
T Consensus 43 GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 43 GGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp ECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999999865
No 466
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.53 E-value=0.29 Score=45.75 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.|++||||||+.+.|+..+
T Consensus 9 ~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 9 DGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp ECCTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999998854
No 467
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.48 E-value=0.29 Score=51.60 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=40.6
Q ss_pred HHhhCCceEEEeCCCC----------CCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCchhHHhhcccEEEEcCCe-
Q 008843 123 ELIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGK- 187 (551)
Q Consensus 123 ~L~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la----~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~- 187 (551)
|-...|.|+|+||--+ +=|......+..+|..+- ..+..||.+|.+|.. .|.- +++.||
T Consensus 270 A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~-----LD~A-llRpGRf 343 (434)
T 4b4t_M 270 AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV-----LDPA-LLRSGRL 343 (434)
T ss_dssp HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC-----CCTT-TCSTTSE
T ss_pred HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh-----cCHh-HhcCCce
Confidence 3345799999999521 223334445556666663 235688889998742 2332 245565
Q ss_pred --EEEecCCCC
Q 008843 188 --LVYAGPARD 196 (551)
Q Consensus 188 --iv~~G~~~~ 196 (551)
.++.+.|+.
T Consensus 344 D~~I~i~lPd~ 354 (434)
T 4b4t_M 344 DRKIEFPLPSE 354 (434)
T ss_dssp EEEEECCCCCH
T ss_pred eEEEEeCCcCH
Confidence 467777765
No 468
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=85.45 E-value=0.23 Score=52.55 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=32.1
Q ss_pred HHhHHHHHHHHHhhCCceEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 008843 113 GEKKRLSLACELIASPSVIYADEP-TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168 (551)
Q Consensus 113 GerqRvsIa~~L~~~p~illLDEP-tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~ 168 (551)
.|.+....+...+.+++++++... +.|+.... .++.+.|+ +.++.+|++.+.
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEEC
Confidence 366666677777778887655544 44565543 44555543 467777777765
No 469
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.26 E-value=0.3 Score=51.42 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=30.5
Q ss_pred hhCCceEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 008843 125 IASPSVIYADEPT----------TGLDAFQAEKVMEALRQLA----QDGHTVICSIHQPR 170 (551)
Q Consensus 125 ~~~p~illLDEPt----------sGLD~~~~~~i~~~L~~la----~~g~tvi~~~H~~~ 170 (551)
-..|.|+++||-- ++-|......+.++|..+- ..|..||.+|++|.
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 3568999999962 2334445555666666664 23568899999875
No 470
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.21 E-value=0.21 Score=48.48 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=16.7
Q ss_pred CCCCCcHHHHHHHHHcCc
Q 008843 2 GPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~ 19 (551)
|+.||||||+.+.|+..+
T Consensus 31 G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 31 GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CSTTSSHHHHHTTTGGGC
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998875
No 471
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.98 E-value=0.31 Score=50.79 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=40.7
Q ss_pred hhCCceEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hCCCEEEEEecCCchhHHhhcccEEEEcCCe---
Q 008843 125 IASPSVIYADEPTTGL----------DAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGK--- 187 (551)
Q Consensus 125 ~~~p~illLDEPtsGL----------D~~~~~~i~~~L~~la----~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~--- 187 (551)
-..|.|+|+||--+-. |......+.++|.++- ..+..||.+|..|.. .|.-+ ++-||
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~-----LDpAl-lRpGRfD~ 312 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI-----LDPAL-LRPGRIDR 312 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS-----SCHHH-HSTTSSCC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh-----CCHhH-cCCCcCce
Confidence 4569999999965422 3344555666776664 235678999998752 23332 34454
Q ss_pred EEEecCCCC
Q 008843 188 LVYAGPARD 196 (551)
Q Consensus 188 iv~~G~~~~ 196 (551)
.++.+.|+.
T Consensus 313 ~I~i~lPd~ 321 (405)
T 4b4t_J 313 KIEFPPPSV 321 (405)
T ss_dssp EEECCCCCH
T ss_pred EEEcCCcCH
Confidence 567777765
No 472
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.94 E-value=0.3 Score=44.97 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
.|+||+|||||...|..+
T Consensus 22 ~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 22 TGEANIGKSELSLALIDR 39 (181)
T ss_dssp EESSSSSHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHc
Confidence 489999999999988774
No 473
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.93 E-value=0.3 Score=47.11 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=17.4
Q ss_pred CCCCCcHHHHHHHHHcCcC
Q 008843 2 GPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~ 20 (551)
|++||||||+.+.|+..+.
T Consensus 34 G~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 34 GLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp ESTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 8999999999999988764
No 474
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.89 E-value=0.36 Score=47.44 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||.+.++...
T Consensus 56 ~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999865
No 475
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=84.84 E-value=0.32 Score=48.77 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||+|.++++...
T Consensus 57 ~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 57 YGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp ECSSSSCHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 3999999999999999864
No 476
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.83 E-value=0.34 Score=48.89 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+||+|||||||...|+-..
T Consensus 9 ~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 9 VGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp ECCTTSCHHHHHHHHHHTT
T ss_pred ECCCcCCHHHHHHHHHHhC
Confidence 4999999999999999865
No 477
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=84.82 E-value=0.29 Score=48.52 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|.+|+|||||+|.|.|..
T Consensus 126 vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 126 IGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EESTTSSHHHHHHHHHTSC
T ss_pred EecCCCchHHHHHHHhcCc
Confidence 5999999999999999975
No 478
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.72 E-value=0.33 Score=51.22 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=43.5
Q ss_pred HHhhCCceEEEeCCCC----------CCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCchhHHhhcccEEEEcCCeE
Q 008843 123 ELIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (551)
Q Consensus 123 ~L~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la----~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 188 (551)
|-...|.|+|+||--+ +-|......+..+|.++- ..+..||.+|.+|.. .|.-+ ++.||.
T Consensus 270 A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpAl-lRpGRf 343 (437)
T 4b4t_L 270 AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPAL-LRPGRL 343 (437)
T ss_dssp HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTTT-TSTTSE
T ss_pred HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHHH-hCCCcc
Confidence 3446799999999853 224444555667777764 235689999998742 34433 466654
Q ss_pred ---EEecCCCC
Q 008843 189 ---VYAGPARD 196 (551)
Q Consensus 189 ---v~~G~~~~ 196 (551)
++.+.|+.
T Consensus 344 D~~I~i~lPd~ 354 (437)
T 4b4t_L 344 DRKVEIPLPNE 354 (437)
T ss_dssp EEEECCCCCCH
T ss_pred ceeeecCCcCH
Confidence 67777765
No 479
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.67 E-value=0.32 Score=46.08 Aligned_cols=20 Identities=45% Similarity=0.562 Sum_probs=17.8
Q ss_pred CCCCCcHHHHHHHHHcCcCC
Q 008843 2 GPSGSGKTTLLNVLAGQLMA 21 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~~ 21 (551)
|++||||||+.+.|+..+..
T Consensus 10 G~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 10 GLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp ECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999987653
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.38 E-value=0.39 Score=45.89 Aligned_cols=19 Identities=53% Similarity=0.595 Sum_probs=17.2
Q ss_pred CCCCCcHHHHHHHHHcCcC
Q 008843 2 GPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~ 20 (551)
|++||||||+.+.|+..+.
T Consensus 28 G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 28 GIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 481
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.16 E-value=0.42 Score=44.96 Aligned_cols=19 Identities=53% Similarity=0.873 Sum_probs=17.3
Q ss_pred CCCCCcHHHHHHHHHcCcC
Q 008843 2 GPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~ 20 (551)
|+-||||||+.+.|+..+.
T Consensus 9 G~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 9 GPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHH
Confidence 8999999999999998774
No 482
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=84.02 E-value=0.44 Score=47.60 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||++.+.+.
T Consensus 9 vG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 9 MGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp ECCTTSSHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 699999999999998876
No 483
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=84.02 E-value=0.26 Score=50.35 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|.+|+|||||++.|.|..
T Consensus 37 vG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 37 VGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp ECBTTSSHHHHHHTTTTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 484
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=84.02 E-value=0.34 Score=50.36 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+||+|+|||||++.|++..
T Consensus 180 vG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 180 VAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp ECCSSSSHHHHHHHHHHHH
T ss_pred ecCCCCChhHHHHHHHHHH
Confidence 5999999999999999865
No 485
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.00 E-value=0.3 Score=49.20 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|+||+|||||...|.++
T Consensus 150 ~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 150 TGDSGIGKSETALELIKR 167 (314)
T ss_dssp EESTTSSHHHHHHHHHHT
T ss_pred EeCCCCCHHHHHHHHHhc
Confidence 499999999999999885
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.97 E-value=0.37 Score=48.48 Aligned_cols=19 Identities=53% Similarity=0.669 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+||+|||||||...|+...
T Consensus 16 ~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 16 MGPTASGKTALAIELRKIL 34 (316)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECCCccCHHHHHHHHHHhC
Confidence 4999999999999999864
No 487
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=83.84 E-value=0.36 Score=45.88 Aligned_cols=19 Identities=42% Similarity=0.511 Sum_probs=17.6
Q ss_pred CCCCCcHHHHHHHHHcCcC
Q 008843 2 GPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~ 20 (551)
|++||||||+.+.|+..+.
T Consensus 12 G~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 12 GLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp ECSSSSHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999775
No 488
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.06 E-value=0.43 Score=50.54 Aligned_cols=19 Identities=53% Similarity=0.788 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||.++|+...
T Consensus 56 ~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 56 WGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 3999999999999999875
No 489
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.98 E-value=0.49 Score=44.10 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=17.2
Q ss_pred CCCCCcHHHHHHHHHcCcC
Q 008843 2 GPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 2 GpsGaGKSTLL~~L~g~~~ 20 (551)
|+-||||||..+.|+..+.
T Consensus 7 G~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 8999999999999998764
No 490
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.90 E-value=0.41 Score=54.54 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=18.0
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
.||||+|||||.++|++...
T Consensus 517 ~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 517 YGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp BCCTTSSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 49999999999999999763
No 491
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=82.83 E-value=0.38 Score=50.14 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCcccCccccCCcCCCCChHHhHHHHHHHHHhhCCceEEE
Q 008843 84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYA 133 (551)
Q Consensus 84 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRvsIa~~L~~~p~illL 133 (551)
.++++++.++.... ...+|.+|.+++.-..-+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45667777766321 236899998888777767778988887
No 492
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.77 E-value=0.48 Score=47.47 Aligned_cols=19 Identities=47% Similarity=0.830 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+|||||.+.|+...
T Consensus 61 ~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 61 SGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECcCCCCHHHHHHHHHHHh
Confidence 3999999999999998865
No 493
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=82.75 E-value=0.35 Score=51.47 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||+|.|+|.
T Consensus 230 vG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 230 VGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHhCC
Confidence 599999999999999986
No 494
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=82.56 E-value=0.42 Score=49.19 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 008843 1 MGPSGSGKTTLLNVLAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~ 18 (551)
+|++|+|||||+|.|.|.
T Consensus 168 vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 168 VGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCchHHHHHHHHhh
Confidence 599999999999999996
No 495
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.49 E-value=0.51 Score=48.12 Aligned_cols=19 Identities=58% Similarity=0.868 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
.||+|+||||+.++|+...
T Consensus 57 ~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 57 IGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp ECCTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999999865
No 496
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=82.43 E-value=0.1 Score=48.00 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++|+|||||++.|.+..
T Consensus 39 vG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 39 IGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp ECCTTSCCTTTTTSSBCCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998754
No 497
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.36 E-value=0.47 Score=50.28 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=40.8
Q ss_pred HHHhhCCceEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hCCCEEEEEecCCchhHHhhcccEEEEcCCe
Q 008843 122 CELIASPSVIYADEPTTGL----------DAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (551)
Q Consensus 122 ~~L~~~p~illLDEPtsGL----------D~~~~~~i~~~L~~la----~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 187 (551)
.|-...|.|+|+||--+-. +......+..+|.++- ..+..||.+|.+|.. .|.- +++-||
T Consensus 297 ~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~-----LDpA-LlRpGR 370 (467)
T 4b4t_H 297 MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT-----LDPA-LLRPGR 370 (467)
T ss_dssp HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS-----BCHH-HHSTTT
T ss_pred HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc-----CChh-hhcccc
Confidence 3344679999999986432 3344455666676664 234578888888742 2333 233343
Q ss_pred ---EEEecCCCC
Q 008843 188 ---LVYAGPARD 196 (551)
Q Consensus 188 ---iv~~G~~~~ 196 (551)
.++.+.|+.
T Consensus 371 FD~~I~i~lPd~ 382 (467)
T 4b4t_H 371 IDRKVEFSLPDL 382 (467)
T ss_dssp CCEEECCCCCCH
T ss_pred ccEEEEeCCcCH
Confidence 466676754
No 498
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=82.35 E-value=0.29 Score=45.73 Aligned_cols=18 Identities=44% Similarity=0.857 Sum_probs=15.5
Q ss_pred CCCCCCcHHHHHHH-HHcC
Q 008843 1 MGPSGSGKTTLLNV-LAGQ 18 (551)
Q Consensus 1 lGpsGaGKSTLL~~-L~g~ 18 (551)
+|++|+|||||++. +.|.
T Consensus 21 ~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 21 VGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EECTTSSHHHHHTTBHHHH
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 59999999999998 6554
No 499
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=82.31 E-value=0.44 Score=48.68 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 008843 1 MGPSGSGKTTLLNVLAGQLM 20 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~~ 20 (551)
+|++|+|||||++.|++.+.
T Consensus 85 ~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 85 TGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp ECCTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999988653
No 500
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=82.28 E-value=0.49 Score=45.50 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 008843 1 MGPSGSGKTTLLNVLAGQL 19 (551)
Q Consensus 1 lGpsGaGKSTLL~~L~g~~ 19 (551)
+|++||||||+.+.|+..+
T Consensus 14 ~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 14 LGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999998754
Done!