BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008844
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 133/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 89
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 90 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 133
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G+ + +SD +A FN+ G L+ + G + D S Q
Sbjct: 134 --VRIWDVKTGMCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 227
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 228 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNMVYIWNLQTK 272
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 273 EIVQKLQGHTDVVISTACHPTENIIASAAL 302
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 34 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 359 WVYIW 363
+ IW
Sbjct: 91 TLKIW 95
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 53 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 110
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 111 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 154
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 155 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 207
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 208 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 248
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 249 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 293
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 294 EIVQKLQGHTDVVISTACHPTENIIASAAL 323
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 55 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 111
Query: 359 WVYIW 363
+ IW
Sbjct: 112 TLKIW 116
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 51 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 108
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 109 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 152
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 153 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 246
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 247 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 291
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 292 EIVQKLQGHTDVVISTACHPTENIIASAAL 321
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 53 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 109
Query: 359 WVYIW 363
+ IW
Sbjct: 110 TLKIW 114
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LAA +D IW K + + I+ V WS + ++ ++ D
Sbjct: 32 VKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 89
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 90 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 133
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 134 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 227
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 228 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 272
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 273 EIVQKLQGHTDVVISTACHPTENIIASAAL 302
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ A SA K I IW G K + G K + D+AW ++VS S
Sbjct: 34 FSPNGEWLAASSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 359 WVYIW 363
+ IW
Sbjct: 91 TLKIW 95
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 92
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 93 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 136
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 137 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 230
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 231 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 275
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 276 EIVQKLQGHTDVVISTACHPTENIIASAAL 305
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 37 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 359 WVYIW 363
+ IW
Sbjct: 94 TLKIW 98
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 46 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 103
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 104 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 147
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 148 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 200
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 201 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 241
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 242 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 286
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 287 EIVQKLQGHTDVVISTACHPTENIIASAAL 316
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 48 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 104
Query: 359 WVYIW 363
+ IW
Sbjct: 105 TLKIW 109
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 92
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 93 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 136
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 137 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 230
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 231 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 275
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 276 EIVQKLQGHTDVVISTACHPTENIIASAAL 305
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 37 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 359 WVYIW 363
+ IW
Sbjct: 94 TLKIW 98
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 133/331 (40%), Gaps = 63/331 (19%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 89
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 90 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 133
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC-FNKYGDLVYVGNSKGEILVIDHKSNQ 206
+ + DV G + +SD P +A FN+ G L+ + G + D S Q
Sbjct: 134 --VRIWDVKTGKCLKTLPAHSD------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 207 IRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEP 266
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG---- 227
Query: 267 NGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RA 325
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 228 -----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQT 271
Query: 326 GYLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAAL 302
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 34 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 359 WVYIW 363
+ IW
Sbjct: 91 TLKIW 95
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 25 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 82
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 83 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 126
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 127 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 180 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 220
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 221 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 265
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 266 EIVQKLQGHTDVVISTACHPTENIIASAAL 295
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 27 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 83
Query: 359 WVYIW 363
+ IW
Sbjct: 84 TLKIW 88
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 30 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 87
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 88 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 131
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 132 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 185 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 225
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 226 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 270
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 271 EIVQKLQGHTDVVISTACHPTENIIASAAL 300
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 32 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 88
Query: 359 WVYIW 363
+ IW
Sbjct: 89 TLKIW 93
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 133/331 (40%), Gaps = 63/331 (19%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 89
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 90 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 133
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC-FNKYGDLVYVGNSKGEILVIDHKSNQ 206
+ + DV G + +SD P +A FN+ G L+ + G + D S Q
Sbjct: 134 --VRIWDVKTGKCLKTLPAHSD------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 207 IRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEP 266
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG---- 227
Query: 267 NGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RA 325
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 228 -----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQT 271
Query: 326 GYLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAAL 302
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 34 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 359 WVYIW 363
+ IW
Sbjct: 91 TLKIW 95
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 92
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 93 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 136
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 137 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 230
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 231 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 275
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 276 EIVQKLQGHTDVVISTACHPTENIIASAAL 305
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 37 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 359 WVYIW 363
+ IW
Sbjct: 94 TLKIW 98
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 34 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 91
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 92 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 135
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 136 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 189 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 229
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 230 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 274
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 275 EIVQKLQGHTDVVISTACHPTENIIASAAL 304
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 36 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 92
Query: 359 WVYIW 363
+ IW
Sbjct: 93 TLKIW 97
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 86
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 87 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 130
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 131 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 224
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 225 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 269
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 270 EIVQKLQGHTDVVISTACHPTENIIASAAL 299
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 31 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 359 WVYIW 363
+ IW
Sbjct: 88 TLKIW 92
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 86
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 87 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 130
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 131 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 224
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 225 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 269
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 270 EIVQKLQGHTDVVISTACHPTENIIASAAL 299
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 31 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 359 WVYIW 363
+ IW
Sbjct: 88 TLKIW 92
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 28 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 85
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 86 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 129
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G + +SD +A FN+ G L+ + G + D S Q
Sbjct: 130 --VRIWDVKTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D T++++ D KG
Sbjct: 183 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--------------DYSKG----- 223
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 224 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTK 268
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 269 EIVQKLQGHTDVVISTACHPTENIIASAAL 298
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 30 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 86
Query: 359 WVYIW 363
+ IW
Sbjct: 87 TLKIW 91
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ F+ G LA+ +D IW K + + I+ V WS + ++ ++ D
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDD 89
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGSTSI 147
K+L +WDV G+ + + G S C C + + +IV S +
Sbjct: 90 KTLKIWDVSSGKCLKTL------------KGHSNYVFC--CNFNPQSNLIVSGSFDES-- 133
Query: 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207
+ + DV G+ + +SD +A FN+ G L+ + G + D S Q
Sbjct: 134 --VRIWDVKTGMCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267
+ + + FS NG+Y+L + D ++++ D KG
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW--------------DYSKG----- 227
Query: 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAG 326
KCL + ++ K A G+W+++GS ++ +YIW+ +
Sbjct: 228 ----------KCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSE---DNMVYIWNLQTK 272
Query: 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356
+V+ L+G + +I A HP II S +L
Sbjct: 273 EIVQKLQGHTDVVISTACHPTENIIASAAL 302
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358
FS +GEW+ + SA K I IW G K + G K + D+AW ++VS S
Sbjct: 34 FSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 359 WVYIW 363
+ IW
Sbjct: 91 TLKIW 95
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 78/354 (22%)
Query: 17 IEEYLEH-GVMKCIAFNRRGTLLAAGC---------SDGSCVIWDFETRGIAKELRDKEC 66
+ + L+H V+ C+ F+ G LA GC SDGS V + K+ +
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 67 VAA------ITSVCWSKYGHRILVSAADKSLTLWD--------VLKGEKITRIVLQQTPL 112
++ I SVC+S G + A D+ + +WD +L+G + L P
Sbjct: 117 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 113 QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS-SRNKYSDGT 171
+L GS ++ I DL TG S L +++ D +A S KY
Sbjct: 177 GDKLVSGSGDRTV----------RIWDLRTGQCS-LTLSIEDGVTTVAVSPGDGKYIAAG 225
Query: 172 PPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYL 231
++ G LV +S+ E HK + + ++VF+R+GQ +
Sbjct: 226 SLDRAVRVWDSETGFLVERLDSENESGT-GHKDS-------------VYSVVFTRDGQSV 271
Query: 232 LTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN-GIEKMKMVGSKCLALFREFQDSI 290
++ S DR+++++ NL N ++ PN G ++ +G K L
Sbjct: 272 VSGSLDRSVKLW-NLQNANNKSDS--------KTPNSGTCEVTYIGHKDFVL-------- 314
Query: 291 TKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAGYLVKILEGPKEALIDLA 343
+ + + E++++GS +G + WD ++G + +L+G + ++I +A
Sbjct: 315 ------SVATTQNDEYILSGSKDRG---VLFWDKKSGNPLLMLQGHRNSVISVA 359
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 219 IKNIVFSRNGQYLLTNSNDRTIRIYD----NLLPLKNGLEALVDIEKGIAEPNGIEKMKM 274
I+++ FS +G++L T + DR IRI+D ++ + G E DI P+G + +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ--DIYSLDYFPSGDKLVSG 183
Query: 275 VGSKCL----------ALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD- 323
G + + +L +D +T + GDG+++ AGS + + +WD
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTV----AVSPGDGKYIAAGSLDRA---VRVWDS 236
Query: 324 RAGYLVKILE-------GPKEALIDLAWHPVHPIIVSVSLTGWVYIW 363
G+LV+ L+ G K+++ + + +VS SL V +W
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 216 AAVIKNIVFSRNGQYLLTNSNDRT--IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273
+V+ + FS +G+YL T N T R+ D L + L D +P +
Sbjct: 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSL-----VARLSDDSAANKDPENLNTSS 118
Query: 274 MVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD-RAGYLVKIL 332
S ++ ++ CFS DG+++ G+ + I IWD +V IL
Sbjct: 119 SPSSD--------------LYIRSVCFSPDGKFLATGAE---DRLIRIWDIENRKIVMIL 161
Query: 333 EGPKEALIDLAWHPVHPIIVSVSLTGWVYIW 363
+G ++ + L + P +VS S V IW
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 104/240 (43%), Gaps = 7/240 (2%)
Query: 5 IIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK 64
+ D GDF ++ + + ++ I+F+ G LLA+ +D + +WDF+ + +
Sbjct: 134 VWDYETGDFERTLKGHTDS--VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPS 124
+ ++SV G I+ ++ DK++ +W+V G + + + R+ + +
Sbjct: 192 D--HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV--RMVRPNQDGT 247
Query: 125 LCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184
L +C + ++T V I+ + + YS + K
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 185 GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244
G + G+ I + D S + + V ++ ++F G+++L+ ++D+T+R++D
Sbjct: 308 GPFLLSGSRDKTIKMWD-VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/354 (18%), Positives = 144/354 (40%), Gaps = 52/354 (14%)
Query: 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS 85
++ +AF+ G +A+ D + +W+ + + + L +++ V +S G I +
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS--SSVWGVAFSPDGQTIASA 75
Query: 86 AADKSLTLWD-------VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIV 138
+ DK++ LW+ L G + + +P + S ++ L + ++
Sbjct: 76 SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQ 133
Query: 139 DLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEIL 198
L+ S+S+ +A IA +S +K T +N+ G L+
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDK----------TVKLWNRNGQLLQT-------- 175
Query: 199 VIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258
+ H S+ + + FS +GQ + + S+D+T+++++ L L
Sbjct: 176 LTGHSSS-------------VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 222
Query: 259 IEKGIA-EPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-----DGEWVIAGSA 312
+G+A P+G K + L+ + + + +G DG+ + + S
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASD 282
Query: 313 SKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366
K + +W+R G L++ L G ++ +A+ P I S S V +W ++
Sbjct: 283 DK---TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/352 (19%), Positives = 143/352 (40%), Gaps = 54/352 (15%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+AF+ G +A+ D + +W+ + + + L +++ V +S G I ++ D
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS--SSVRGVAFSPDGQTIASASDD 119
Query: 89 KSLTLWD-------VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLS 141
K++ LW+ L G + + +P + S ++ L + ++ L+
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLT 177
Query: 142 TGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVID 201
S+S+ +A IA +S +K T +N+ G L+ +
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDK----------TVKLWNRNGQLLQT--------LTG 219
Query: 202 HKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEK 261
H S+ ++ + FS +GQ + + S+D+T+++++ L L
Sbjct: 220 HSSS-------------VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVN 266
Query: 262 GIA-EPNGIEKMKMVGSKCLALFR---EFQDSITKMH---WKAPCFSGDGEWVIAGSASK 314
G+A P+G K + L+ + ++T W FS DG+ + + S K
Sbjct: 267 GVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW-GVAFSPDGQTIASASDDK 325
Query: 315 GEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366
+ +W+R G ++ L G ++ +A+ P I S S V +W ++
Sbjct: 326 ---TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 216 AAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIA-EPNGIEKMKM 274
++ ++ + FS +GQ + + S+D+T+++++ L L G+A P+G
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 75
Query: 275 VGSKCLALFR---EFQDSIT--KMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLV 329
K + L+ + ++T + FS DG+ + + S K + +W+R G L+
Sbjct: 76 SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK---TVKLWNRNGQLL 132
Query: 330 KILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366
+ L G ++ +A+ P I S S V +W ++
Sbjct: 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/359 (18%), Positives = 142/359 (39%), Gaps = 62/359 (17%)
Query: 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS 85
++ +AF+ G +A+ D + +W+ + + + L +++ V + G I +
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS--SSVNGVAFRPDGQTIASA 280
Query: 86 AADKSLTLWD-------VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIV 138
+ DK++ LW+ L G + + +P + S ++ L + +
Sbjct: 281 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQHLQ 338
Query: 139 DLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEIL 198
L+ S+S+ +A IA +S +K T +N+ G L+
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDK----------TVKLWNRNGQLLQT-------- 380
Query: 199 VIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD---NLLPLKNGLEA 255
+ H S+ ++ + FS +GQ + + S+D+T+++++ LL G +
Sbjct: 381 LTGHSSS-------------VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 427
Query: 256 LV--------DIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWV 307
V D A + K+ + L S+ + FS DG+ +
Sbjct: 428 SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV-----RGVAFSPDGQTI 482
Query: 308 IAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366
+ S K + +W+R G L++ L G ++ +A+ P I S S V +W ++
Sbjct: 483 ASASDDK---TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 122/317 (38%), Gaps = 48/317 (15%)
Query: 15 EVIEEYLEHG-VMKCIAFNR--RGTLLAAGCSDGSCVIWDFETRGIAKELRDKEC----V 67
E++ Y EH + C F LLA G SD +WD L KEC
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD---------LNQKECRNTMF 746
Query: 68 AAITSVCWSKYG--HRILVS-AADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPS 124
SV ++ ++L S +AD +L LWD + I ++Q L P
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE-DPQEDMEV 805
Query: 125 LCLACPLSS-APMIVDLSTGSTSILPIAVPDVANGIAPSSRN--KYSDGTPPFTPTAACF 181
+ C S+ I+ + + I + I + +Y D +P
Sbjct: 806 IVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVAL 865
Query: 182 NKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIR 241
++Y V + N+ V D + + + + ++FS +G LT+S+D+TIR
Sbjct: 866 SQY--CVELWNTDSRSKVADCRGH----------LSWVHGVMFSPDGSSFLTSSDDQTIR 913
Query: 242 IYDNLLPLKNG---LEALVDI-----EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293
+++ KN L+ VD+ E + + I +++++ + + D +T+
Sbjct: 914 LWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQI-----DYLTEA 968
Query: 294 HWKAPCFSGDGEWVIAG 310
C S +++ G
Sbjct: 969 QVSCCCLSPHLQYIAFG 985
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDF---ETRGIAKELRDKECVAA---ITSVCW 75
+G ++C AF+ TLLA G +G IW+ E + L ++ +T +C+
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCF 1191
Query: 76 SKYGHRILVSAADKSLTLWDVLKGE 100
S G ++L+SA + W+V+ GE
Sbjct: 1192 SPDG-KMLISAGG-YIKWWNVVTGE 1214
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105
A+ C+S+ G RI ADK+L ++ GEK+ I
Sbjct: 623 AVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI 659
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Query: 26 MKCIAFNRRGTLLAAGCSDGSCVIW---DFETRGIAKE--LRDKECVAAITSVCWSKYGH 80
+ + +N G+L A+ DG+ V++ D G+ ++ L++ ++ + WS G
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 81 RILVSAADKSLTLWDV--LKGEKI----TRIVLQQ 109
+I ++ADK++ +W+V LK EK TRI QQ
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 287
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 26/242 (10%)
Query: 35 GTLLAAGCSDGSCVIWDFET---------RGIAKELRDKECVA--AITSVCWSKYGHRIL 83
G + +G SDG V++D E + + RD V ++ +V W + +
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 84 VSAA-DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142
S++ DK+L +WD + ++T + P S+ L + DL +
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDH 202
GS S + ++ S R Y T ++ V + G ++ +D
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD-------VRRASGCLITLDQ 228
Query: 203 KSNQIRALVPVSGAA---VIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259
+ + V + A + + F+ +G +LLT D +R++++ NG LV+
Sbjct: 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS----SNGENTLVNY 284
Query: 260 EK 261
K
Sbjct: 285 GK 286
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS 85
+ C+A++ G + G +G +W+ +T + L A I SV W+K G I+
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR--APIVSVKWNKDGTHIISM 167
Query: 86 AADKSLTLWDVLKGEKITRIVLQQT---PLQARLHPG 119
+ LW+V+ G + L++T + A H G
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
I F G A G D +C ++D + ITSV +SK G +L D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 89 KSLTLWDVLKGEK 101
+ +WD LK ++
Sbjct: 292 FNCNVWDALKADR 304
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 29/235 (12%)
Query: 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-GIAKELRDKECVAAITSVCWSKYGHRIL 83
VM C A+ G +A G D C I++ +TR G + R+ S C ++I+
Sbjct: 100 VMTC-AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 84 VSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143
S+ D + LWD+ Q H G LS AP +G
Sbjct: 159 TSSGDTTCALWDIET---------GQQTTTFTGHTGD-------VMSLSLAPDTRLFVSG 202
Query: 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK 203
+ + DV G+ R ++ A CF G+ G+ + D +
Sbjct: 203 ACDA-SAKLWDVREGMC---RQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 204 SNQIRALVPVSGAAVIKNIV---FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255
++Q L+ S +I I FS++G+ LL +D ++D L + G+ A
Sbjct: 257 ADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
I F G A G D +C ++D + ITSV +SK G +L D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 89 KSLTLWDVLKGEK 101
+ +WD LK ++
Sbjct: 292 FNCNVWDALKADR 304
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 29/235 (12%)
Query: 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-GIAKELRDKECVAAITSVCWSKYGHRIL 83
VM C A+ G +A G D C I++ +TR G + R+ S C ++I+
Sbjct: 100 VMTC-AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 84 VSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143
S+ D + LWD+ Q H G LS AP +G
Sbjct: 159 TSSGDTTCALWDIET---------GQQTTTFTGHTGD-------VMSLSLAPDTRLFVSG 202
Query: 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK 203
+ + DV G+ R ++ A CF G+ G+ + D +
Sbjct: 203 ACDA-SAKLWDVREGMC---RQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 204 SNQIRALVPVSGAAVIKNIV---FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255
++Q L+ S +I I FS++G+ LL +D ++D L + G+ A
Sbjct: 257 ADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
I F G A G D +C ++D + ITSV +SK G +L D
Sbjct: 243 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Query: 89 KSLTLWDVLKGEK 101
+ +WD LK ++
Sbjct: 303 FNCNVWDALKADR 315
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 29/235 (12%)
Query: 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-GIAKELRDKECVAAITSVCWSKYGHRIL 83
VM C A+ G +A G D C I++ +TR G + R+ S C ++I+
Sbjct: 111 VMTC-AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 169
Query: 84 VSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143
S+ D + LWD+ Q H G LS AP +G
Sbjct: 170 TSSGDTTCALWDIET---------GQQTTTFTGHTGD-------VMSLSLAPDTRLFVSG 213
Query: 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK 203
+ + DV G+ R ++ A CF G+ G+ + D +
Sbjct: 214 ACDA-SAKLWDVREGMC---RQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLR 267
Query: 204 SNQIRALVPVSGAAVIKNIV---FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255
++Q L+ S +I I FS++G+ LL +D ++D L + G+ A
Sbjct: 268 ADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 320
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
I F G A G D +C ++D + ITSV +SK G +L D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 89 KSLTLWDVLKGEK 101
+ +WD LK ++
Sbjct: 292 FNCNVWDALKADR 304
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 29/235 (12%)
Query: 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-GIAKELRDKECVAAITSVCWSKYGHRIL 83
VM C A+ G +A G D C I++ +TR G + R+ S C ++I+
Sbjct: 100 VMTC-AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 84 VSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143
S+ D + LWD+ Q H G LS AP +G
Sbjct: 159 TSSGDTTCALWDIET---------GQQTTTFTGHTGD-------VMSLSLAPDTRLFVSG 202
Query: 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK 203
+ + DV G+ R ++ A CF G+ G+ + D +
Sbjct: 203 ACDA-SAKLWDVREGMC---RQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 204 SNQIRALVPVSGAAVIKNIV---FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255
++Q L+ S +I I FS++G+ LL +D ++D L + G+ A
Sbjct: 257 ADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
I F G A G D +C ++D + ITSV +SK G +L D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 89 KSLTLWDVLKGEK 101
+ +WD LK ++
Sbjct: 292 FNCNVWDALKADR 304
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 29/235 (12%)
Query: 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-GIAKELRDKECVAAITSVCWSKYGHRIL 83
VM C A+ G +A G D C I++ +TR G + R+ S C ++I+
Sbjct: 100 VMTC-AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 84 VSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143
S+ D + LWD+ Q H G LS AP +G
Sbjct: 159 TSSGDTTCALWDIET---------GQQTTTFTGHTGD-------VMSLSLAPDTRLFVSG 202
Query: 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK 203
+ + DV G+ R ++ A CF G+ G+ + D +
Sbjct: 203 ACDA-SAKLWDVREGMC---RQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 204 SNQIRALVPVSGAAVIKNIV---FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255
++Q L+ S +I I FS++G+ LL +D ++D L + G+ A
Sbjct: 257 ADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 28 CIAFN---RRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILV 84
C++F+ G L AG W+ + G + + VCWS G ++
Sbjct: 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103
Query: 85 SAADKSLTLWDVLKGEKITRIVLQQTPLQ 113
++ DK+ +WD+ + I +I P++
Sbjct: 104 ASCDKTAKMWDLSSNQAI-QIAQHDAPVK 131
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 24/216 (11%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ + G +G DG+ +WD T + + SV +S +I+ + D
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRD 126
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL 148
K++ LW+ L K T +Q H S S P SS P+IV S G +
Sbjct: 127 KTIKLWNTLGVCKYT--------VQDESH--SEWVSCVRFSPNSSNPIIV--SCGWDKL- 173
Query: 149 PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIR 208
+ V ++AN ++ ++ T + G L G G+ ++ D N+ +
Sbjct: 174 -VKVWNLANCKLKTNHIGHTGYLNTVTVSPD-----GSLCASGGKDGQAMLWD--LNEGK 225
Query: 209 ALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244
L + G +I + FS N +Y L + +I+I+D
Sbjct: 226 HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWD 260
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 28 CIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAA--------ITSVCWSKYG 79
C + NR A G S IWD E + I EL+ +E ++ TS+ WS G
Sbjct: 240 CFSPNRYWLCAATG---PSIKIWDLEGKIIVDELK-QEVISTSSKAEPPQCTSLAWSADG 295
Query: 80 HRILVSAADKSLTLWDVLKGEK 101
+ D + +W V G +
Sbjct: 296 QTLFAGYTDNLVRVWQVTIGTR 317
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRIL 83
G + + + G+L A+G DG ++WD K L + I ++C+S L
Sbjct: 193 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNE---GKHLYTLDGGDIINALCFSP-NRYWL 248
Query: 84 VSAADKSLTLWDVLKGEKI 102
+A S+ +WD L+G+ I
Sbjct: 249 CAATGPSIKIWD-LEGKII 266
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 24/216 (11%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88
+ + G +G DG+ +WD T + + SV +S +I+ + D
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRD 149
Query: 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL 148
K++ LW+ L K T +Q H S S P SS P+IV S G +
Sbjct: 150 KTIKLWNTLGVCKYT--------VQDESH--SEWVSCVRFSPNSSNPIIV--SCGWDKL- 196
Query: 149 PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIR 208
+ V ++AN ++ ++ T + G L G G+ ++ D N+ +
Sbjct: 197 -VKVWNLANCKLKTNHIGHTGYLNTVTVSPD-----GSLCASGGKDGQAMLWDL--NEGK 248
Query: 209 ALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244
L + G +I + FS N +Y L + +I+I+D
Sbjct: 249 HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWD 283
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 28 CIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAA--------ITSVCWSKYG 79
C + NR A G S IWD E + I EL+ +E ++ TS+ WS G
Sbjct: 263 CFSPNRYWLCAATG---PSIKIWDLEGKIIVDELK-QEVISTSSKAEPPQCTSLAWSADG 318
Query: 80 HRILVSAADKSLTLWDVLKGEK 101
+ D + +W V G +
Sbjct: 319 QTLFAGYTDNLVRVWQVTIGTR 340
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRIL 83
G + + + G+L A+G DG ++WD K L + I ++C+S L
Sbjct: 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNE---GKHLYTLDGGDIINALCFSP-NRYWL 271
Query: 84 VSAADKSLTLWDVLKGEKI 102
+A S+ +WD L+G+ I
Sbjct: 272 CAATGPSIKIWD-LEGKII 289
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 111/285 (38%), Gaps = 43/285 (15%)
Query: 15 EVIEEYLEHG-VMKCIAFNRRGT--LLAAGCSDGSCVIWDFETRGIAKELRDKEC----V 67
+++ Y EH + C F + LLA G +D +WD L KEC
Sbjct: 697 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD---------LNQKECRNTMF 747
Query: 68 AAITSVCWSKYG--HRILVS-AADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPS 124
SV ++ +L S +AD +L LWDV + I +++ L + P
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE-DPPEDVEV 806
Query: 125 LCLACPLSS-APMIVDLSTGSTSILPIAVPDVANGIAPSSRN--KYSDGTPPFTPTAACF 181
+ C S+ I+ + + I + I + +Y D +P
Sbjct: 807 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 182 NKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIR 241
++Y V + N + V D + + + + ++FS +G LT S+D+TIR
Sbjct: 867 SQY--CVELWNIDSRLKVADCRGH----------LSWVHGVMFSPDGSSFLTASDDQTIR 914
Query: 242 IYDNLLPLKNG---LEALVDI-----EKGIAEPNGIEKMKMVGSK 278
+++ KN L+ +D+ E + + I ++++ K
Sbjct: 915 VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 959
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105
A+ C+S+ G RI ADK+L ++ GEK+ I
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI 660
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKE---LRDKECVAA----ITSVC 74
+G ++C AF+ G LLA G +G IW+ + + +E A +T VC
Sbjct: 1133 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVC 1192
Query: 75 WSKYGHRILVSAADKSLTLWDVLKGE 100
+S + LVSA L W+V G+
Sbjct: 1193 FSP-DSKTLVSAGG-YLKWWNVATGD 1216
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 111/285 (38%), Gaps = 43/285 (15%)
Query: 15 EVIEEYLEHG-VMKCIAFNRRGT--LLAAGCSDGSCVIWDFETRGIAKELRDKEC----V 67
+++ Y EH + C F + LLA G +D +WD L KEC
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD---------LNQKECRNTMF 740
Query: 68 AAITSVCWSKYG--HRILVS-AADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPS 124
SV ++ +L S +AD +L LWDV + I +++ L + P
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE-DPPEDVEV 799
Query: 125 LCLACPLSS-APMIVDLSTGSTSILPIAVPDVANGIAPSSRN--KYSDGTPPFTPTAACF 181
+ C S+ I+ + + I + I + +Y D +P
Sbjct: 800 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 182 NKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIR 241
++Y V + N + V D + + + + ++FS +G LT S+D+TIR
Sbjct: 860 SQY--CVELWNIDSRLKVADCRGH----------LSWVHGVMFSPDGSSFLTASDDQTIR 907
Query: 242 IYDNLLPLKNG---LEALVDI-----EKGIAEPNGIEKMKMVGSK 278
+++ KN L+ +D+ E + + I ++++ K
Sbjct: 908 VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 952
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105
A+ C+S+ G RI ADK+L ++ GEK+ I
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI 653
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKE---LRDKECVAA----ITSVC 74
+G ++C AF+ G LLA G +G IW+ + + +E A +T VC
Sbjct: 1126 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVC 1185
Query: 75 WSKYGHRILVSAADKSLTLWDVLKGE 100
+S + LVSA L W+V G+
Sbjct: 1186 FSP-DSKTLVSAGG-YLKWWNVATGD 1209
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRIL 83
G + +A + G+L A+G DG ++WD K+L E + I ++C+S L
Sbjct: 562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAE---GKKLYSLEANSVIHALCFSP-NRYWL 617
Query: 84 VSAADKSLTLWDV 96
+A + + +WD+
Sbjct: 618 CAATEHGIKIWDL 630
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 12 DFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAIT 71
D PE+ +Y + + ++ G +LA D S +W + I + L+ ++ I+
Sbjct: 109 DAPEIRNDYY----LNLVDWSS-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS 162
Query: 72 SVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIV 106
SV W K G+ + V + + LWDV + +++ +
Sbjct: 163 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 197
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 12 DFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAIT 71
D PE+ +Y + + ++ G +LA D S +W + I + L+ ++ I+
Sbjct: 98 DAPEIRNDYY----LNLVDWSS-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS 151
Query: 72 SVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIV 106
SV W K G+ + V + + LWDV + +++ +
Sbjct: 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 186
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLW 94
G A+G D +C ++D + + +SV +S G + D ++ +W
Sbjct: 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
Query: 95 DVLKGEKIT 103
DVLKG +++
Sbjct: 312 DVLKGSRVS 320
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 37 LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDV 96
L A+G DG+C +WD E+ + + + S+ G+ + DK +WD+
Sbjct: 170 LTASG--DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 97 LKGEKITRIVLQQTPLQA-RLHP 118
G+ + ++ + + R +P
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYP 250
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 39/185 (21%)
Query: 75 WSKYGHRILVSAADKSLTL--------------WDVLKGEKITRIVLQQTPLQARLHPGS 120
WS GH++ V + D S TL WD+ G++I I P+ A
Sbjct: 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI--DAGPVDA------ 125
Query: 121 STPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180
L+ +P L+TG T + + + V +G + +YS T +
Sbjct: 126 --------WTLAFSPDSQYLATG-THVGKVNIFGVESG-----KKEYSLDTRGKFILSIA 171
Query: 181 FNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAV-IKNIVFSRNGQYLLTNSNDRT 239
++ G + G G I + D + ++ L + G A+ I+++ FS + Q L+T S+D
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 240 IRIYD 244
I+IYD
Sbjct: 230 IKIYD 234
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 12 DFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAIT 71
D PE+ +Y + + ++ G +LA D S +W + I + L+ ++ I+
Sbjct: 18 DAPEIRNDYY----LNLVDWSS-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS 71
Query: 72 SVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIV 106
SV W K G+ + V + + LWDV + +++ +
Sbjct: 72 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA- 87
+A+ G LA+G +D IWD R + AA+ +V W + +L +
Sbjct: 223 LAWRSDGLQLASGGNDNVVQIWD--ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 88 --DKSLTLWDVLKGEKITRI 105
DK + W+ G ++ +
Sbjct: 281 TMDKQIHFWNAATGARVNTV 300
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 41 GCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG--HRILVSAA-DKSLTLWDVL 97
G D + IW + + G+ K++ + A T V +S RIL +AA D++L W V
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQV---DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379
Query: 98 KGEKITR-IVLQQTP 111
G+ + R I + +TP
Sbjct: 380 DGDHVKRPIPITKTP 394
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 25/225 (11%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFE-TRGIAKELRDKECVAAITSVCWSKYGHRILVSAA 87
+A+N GTLLA+ D IW E I K + + + V WS G+ + ++
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 88 DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST----G 143
D + +W + + L+ + + + + +L C + + ++
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK 203
S+L DV + + S+ + + Y D V L + +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASAS------------YDDTVK--------LYREEE 181
Query: 204 SNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLP 248
+ + + + ++ F +GQ L + S+DRT+RI+ LP
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAA------ 69
V+ E + V K +A++ G LA+ D + IW K D ECV
Sbjct: 55 VLSEGHQRTVRK-VAWSPCGNYLASASFDATTCIW-------KKNQDDFECVTTLEGHEN 106
Query: 70 -ITSVCWSKYGHRILVSAADKSLTLWDV 96
+ SV W+ G+ + + DKS+ +W+V
Sbjct: 107 EVKSVAWAPSGNLLATCSRDKSVWVWEV 134
>pdb|2KL4|A Chain A, Nmr Structure Of The Protein Nb7804a
Length = 118
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSA 312
+E + KGI P+ ++ + + S A F + +M W P FS G ++I S
Sbjct: 4 MEVFAEYLKGIDHPDHRDRTEEILSWVAATFPNLE---PQMKWNTPMFSNQGTFIIGFST 60
Query: 313 SK-----GEHKIYIWDRAGYLVKILEGPKEALIDLAWH-PVH 348
SK +I I A + + + L + W+ PVH
Sbjct: 61 SKHHLSVSPEEIGISQFADAIAQAGYSATKGLFRIPWNDPVH 102
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 15 EVIEEYLEH-GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKEC------V 67
+ Y H G + + F G G DG+C ++D T G ++ ++E +
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRNDNEL 298
Query: 68 AAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARL 116
+TSV +S G + ++ +WD L E + + Q + R+
Sbjct: 299 PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECV--AAITSVCWSKYGHRI 82
++ +AF+ G LL AG S+G C +WD + L + I+ + S G +
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 83 LVSAADKSLTLWDVLKGEKI 102
+ DK+L +W KI
Sbjct: 360 CTGSWDKNLKIWAFSGHRKI 379
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKEC--VAAITSVCWSKYGHRILVSA 86
+ +N+ G LL + D S +W + G D + +I C++KY + +
Sbjct: 38 VKYNKEGDLLFSCSKDSSASVW-YSLNGERLGTLDGHTGTIWSIDVDCFTKY---CVTGS 93
Query: 87 ADKSLTLWDVLKGE 100
AD S+ LWDV G+
Sbjct: 94 ADYSIKLWDVSNGQ 107
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 15 EVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAI---- 70
+V++E ++ +A+ +LLAAG D + IW E A + + +A I
Sbjct: 50 DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEES--ADRTFEMDLLAIIEGHE 107
Query: 71 ---TSVCWSKYGHRILVSAADKSLTLWDVLK-GEKITRIVLQQTPLQARLH 117
V WS G+ + + DKS+ +W+ + GE+ I + Q Q H
Sbjct: 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 40/168 (23%)
Query: 296 KAPCFSGDGEWVIAGSASKGEHKIYIW--DRAGY---LVKILEGPKEALIDLAWHPVHPI 350
K +S DG ++ S K ++IW D +G + +L+ + + + WHP +
Sbjct: 111 KGVAWSNDGYYLATCSRDKS---VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL 167
Query: 351 IVSVSLTGWVYIWAKDYTENWSAFAPDFKXXXXXXXXXXXXXXFDLNTETEKVKESNVNE 410
+ S S V IW KDY ++W A LN V S+ ++
Sbjct: 168 LASSSYDDTVRIW-KDYDDDWECVAV-------------------LNGHEGTVWSSDFDK 207
Query: 411 DEEV---------DIVAVDKDAFSDSDMSQEELCFLPAIPCPDVPERQ 449
E V V V K D D QE +C AI PDV +RQ
Sbjct: 208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC--EAI-LPDVHKRQ 252
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 42 CSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101
CSDG+ +WD + + ++ + A+ + S G ++ D ++ WD+ +G +
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SNDGTKLWTGGLDNTVRSWDLREGRQ 217
Query: 102 ITR 104
+ +
Sbjct: 218 LQQ 220
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 26 MKCIAFNRRGTLLAAGCSDGSCV-IWDFETRGIAKELRDKECVAAITSVCWSKYGHRILV 84
+K + NR+G ++A DG+ + ++ + + +E R +I + WS G ++ V
Sbjct: 182 VKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAV 241
Query: 85 SAADKSLTLWDVLKGEKITRIVLQ 108
+ +L +++V + R VL+
Sbjct: 242 VSDKWTLHVFEVFNDAENKRHVLK 265
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTL 93
+ LL+AGC D ++WD T L I SV WS+ G I S DK + +
Sbjct: 144 QNVLLSAGC-DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Query: 94 WDVLKGEKI 102
+ KG +
Sbjct: 203 IEPRKGTVV 211
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 37 LLAAGCSDGSCVIWDFETRGIAKELRD-----KECVAAITSVCWSKYGHRILVSAA-DKS 90
++A+G D + ++W+ G+ LR+ + + V W +L+SA D
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 91 LTLWDVLKGEKI 102
+ +WDV G +
Sbjct: 156 ILVWDVGTGAAV 167
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 30 AFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS--KYGHRILVSAA 87
A + GT+LA+ DG +IW E ++ A++ SV W+ +YG +LV+++
Sbjct: 62 AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121
Query: 88 DKSLTL 93
D +++
Sbjct: 122 DGKVSV 127
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 23/109 (21%)
Query: 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKE--------------- 60
V ++ E ++ + FN G LLA G G VI+ E +
Sbjct: 21 VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSH 80
Query: 61 ------LRDKECVAAITSVCW--SKYGHRILVSAADKSLTLWDVLKGEK 101
L+ E I + W K + L+S DK++ LW + + +K
Sbjct: 81 EPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDK 129
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 37 LLAAGCSDGSCVIWDFETRGIAKELRD-----KECVAAITSVCWSKYGHRILVSAA-DKS 90
++A+G D + ++W+ G+ LR+ + + V W +L+SA D
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 91 LTLWDVLKGEKI 102
+ +WDV G +
Sbjct: 156 ILVWDVGTGAAV 167
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 30 AFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS--KYGHRILVSAA 87
A + GT+LA+ DG +IW E ++ A++ SV W+ +YG +LV+++
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 88 DKSLTL 93
D +++
Sbjct: 122 DGKVSV 127
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 30 AFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS--KYGHRILVSAA 87
A + GT+LA+ DG +IW E ++ A++ SV W+ +YG +LV+++
Sbjct: 64 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123
Query: 88 DKSLTL 93
D +++
Sbjct: 124 DGKVSV 129
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 33 RRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS--KYGHRILVSAADKS 90
+ GT+LA+ DG +IW E ++ A++ SV W+ +YG +LV+++D
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 91 LTL 93
+++
Sbjct: 125 VSV 127
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 30 AFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS--KYGHRILVSAA 87
A + GT+LA+ DG IW E ++ A++ SV W+ +YG +LV+++
Sbjct: 62 AHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASS 121
Query: 88 DKSLTL 93
D +++
Sbjct: 122 DGKVSV 127
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKEC-VAAITSVCWSKYGHRILVS-AADKSLTL 93
+L + D +IWD + +K + A + + ++ Y IL + +ADK++ L
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 94 WDV 96
WD+
Sbjct: 301 WDL 303
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 37 LLAAGCSDGSCVIWDFET----RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLT 92
+LA G G +WD E + L +C AAI +S+ ++ D S+
Sbjct: 337 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIW 396
Query: 93 LWDVLK 98
WD L+
Sbjct: 397 RWDRLR 402
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 15 EVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAK--ELRDKECVAAITS 72
++IE HG + I + +L G + G IWD + + D + +
Sbjct: 206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV 265
Query: 73 VCWSKYGHRILVSAADKS-LTLWDVLKGE 100
+ I+V + K+ LT+W+ +KG
Sbjct: 266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 158 GIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG-NSKGEILVI-----DHKSNQIRALV 211
G+ P N +S + K G LV++G ++ G+ ++ D + L
Sbjct: 13 GLVPRGSNGFSS----VLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH 68
Query: 212 PVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258
P S I + F+ +++ R++ N LP NG+ LVD
Sbjct: 69 PTSEELTIAGMTFTT----FDLGGHEQARRVWKNYLPAINGIVFLVD 111
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 37 LLAAGCSDGSCVIWDFET----RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLT 92
+LA G G +WD E + L +C AAI +S+ ++ D S+
Sbjct: 296 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIW 355
Query: 93 LWDVLK 98
WD L+
Sbjct: 356 RWDRLR 361
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 331 ILEGPKEALIDLAWHPVHPIIVSVSLTGW 359
+L GP+EA+ W P +IV+ TGW
Sbjct: 236 LLGGPEEAIAQAEWAPDGSLIVATDRTGW 264
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 331 ILEGPKEALIDLAWHPVHPIIVSVSLTGW 359
+L GP+EA+ W P +IV+ TGW
Sbjct: 236 LLGGPEEAIAQAEWAPDGSLIVATDRTGW 264
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 37 LLAAGCSDGSCVIWDFET----RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLT 92
+LA G G +WD E + L +C AAI +S+ ++ D S+
Sbjct: 301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIW 360
Query: 93 LWDVLK 98
WD L+
Sbjct: 361 RWDRLR 366
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 37 LLAAGCSDGSCVIWDFET----RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLT 92
+LA G G +WD E + L +C AAI +S+ ++ D S+
Sbjct: 300 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIW 359
Query: 93 LWDVLK 98
WD L+
Sbjct: 360 RWDRLR 365
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 37 LLAAGCSDGSCVIWDFET----RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLT 92
+LA G G +WD E + L +C AAI +S+ ++ D S+
Sbjct: 300 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIW 359
Query: 93 LWDVLK 98
WD L+
Sbjct: 360 RWDRLR 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,861,771
Number of Sequences: 62578
Number of extensions: 710543
Number of successful extensions: 2032
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1620
Number of HSP's gapped (non-prelim): 337
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)