Query 008844
Match_columns 551
No_of_seqs 875 out of 2377
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 17:17:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1273 WD40 repeat protein [G 100.0 2.5E-59 5.4E-64 408.6 28.6 401 1-449 1-404 (405)
2 KOG0271 Notchless-like WD40 re 100.0 2E-46 4.3E-51 335.8 26.3 302 22-383 114-468 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-44 3.4E-49 327.9 23.9 281 21-364 173-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 2.4E-43 5.3E-48 315.9 24.1 308 2-364 138-479 (480)
5 KOG0286 G-protein beta subunit 100.0 2.4E-39 5.2E-44 280.9 31.4 281 22-364 54-343 (343)
6 KOG0265 U5 snRNP-specific prot 100.0 1.1E-39 2.5E-44 284.0 28.1 291 20-364 44-336 (338)
7 KOG0315 G-protein beta subunit 100.0 1.4E-37 3E-42 263.9 26.1 279 2-381 21-303 (311)
8 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-38 2.4E-43 289.9 18.2 256 3-323 199-458 (459)
9 KOG0273 Beta-transducin family 100.0 1.6E-36 3.4E-41 279.4 30.1 277 24-366 236-523 (524)
10 KOG0282 mRNA splicing factor [ 100.0 1E-37 2.2E-42 288.4 19.7 288 21-364 212-503 (503)
11 KOG0291 WD40-repeat-containing 100.0 2.2E-35 4.7E-40 286.2 36.2 382 20-442 142-603 (893)
12 KOG0263 Transcription initiati 100.0 4.2E-37 9.1E-42 300.9 22.9 242 24-369 379-652 (707)
13 KOG0279 G protein beta subunit 100.0 3.9E-35 8.6E-40 253.3 30.5 281 22-366 14-313 (315)
14 KOG0293 WD40 repeat-containing 100.0 3E-36 6.6E-41 272.9 24.1 284 22-367 223-514 (519)
15 KOG0318 WD40 repeat stress pro 100.0 2.3E-34 4.9E-39 268.6 34.1 316 22-371 189-565 (603)
16 KOG0295 WD40 repeat-containing 100.0 3.4E-35 7.3E-40 262.4 22.8 282 21-365 106-405 (406)
17 KOG0284 Polyadenylation factor 100.0 3.9E-36 8.5E-41 272.1 17.0 281 24-368 97-382 (464)
18 KOG0291 WD40-repeat-containing 100.0 2E-33 4.3E-38 272.7 33.9 287 24-372 308-618 (893)
19 cd00200 WD40 WD40 domain, foun 100.0 1.1E-32 2.5E-37 263.4 35.9 281 21-364 7-289 (289)
20 KOG0273 Beta-transducin family 100.0 1.5E-33 3.3E-38 259.8 28.1 294 21-377 176-493 (524)
21 KOG1407 WD40 repeat protein [F 100.0 3.6E-33 7.7E-38 238.8 27.8 282 22-366 19-311 (313)
22 KOG0316 Conserved WD40 repeat- 100.0 2.7E-33 5.9E-38 235.9 25.9 279 22-364 16-297 (307)
23 KOG0266 WD40 repeat-containing 100.0 4.2E-33 9E-38 280.8 32.2 286 22-366 158-454 (456)
24 KOG0296 Angio-associated migra 100.0 4.2E-32 9.1E-37 242.9 33.0 314 19-366 60-398 (399)
25 KOG0319 WD40-repeat-containing 100.0 3E-33 6.6E-38 271.1 27.0 332 1-372 84-583 (775)
26 KOG0281 Beta-TrCP (transducin 100.0 1.6E-34 3.5E-39 256.3 16.2 272 24-369 198-480 (499)
27 KOG0263 Transcription initiati 100.0 1.9E-33 4.1E-38 275.4 24.0 231 20-354 448-703 (707)
28 KOG0286 G-protein beta subunit 100.0 2.8E-32 6.1E-37 237.0 28.2 257 3-323 79-343 (343)
29 KOG0318 WD40 repeat stress pro 100.0 8.9E-32 1.9E-36 251.3 33.3 323 3-366 214-602 (603)
30 KOG0315 G-protein beta subunit 100.0 1.4E-32 3E-37 233.6 25.3 244 36-385 11-277 (311)
31 KOG0279 G protein beta subunit 100.0 3.3E-32 7.3E-37 235.2 27.6 265 4-325 41-313 (315)
32 KOG0643 Translation initiation 100.0 1E-32 2.2E-37 236.8 23.3 293 21-366 8-317 (327)
33 KOG0285 Pleiotropic regulator 100.0 1.9E-32 4E-37 244.2 25.4 280 22-366 150-439 (460)
34 PLN00181 protein SPA1-RELATED; 100.0 4E-31 8.6E-36 286.5 39.0 285 22-365 482-792 (793)
35 KOG0319 WD40-repeat-containing 100.0 4.1E-32 8.9E-37 263.3 26.3 310 2-367 304-620 (775)
36 KOG0645 WD40 repeat protein [G 100.0 9.7E-31 2.1E-35 225.2 30.9 280 22-366 13-311 (312)
37 KOG0306 WD40-repeat-containing 100.0 2.1E-31 4.5E-36 258.6 26.3 367 2-383 44-651 (888)
38 KOG0275 Conserved WD40 repeat- 100.0 2.2E-32 4.7E-37 240.7 16.0 285 22-364 212-507 (508)
39 KOG0278 Serine/threonine kinas 100.0 9.4E-32 2E-36 228.6 18.4 282 21-369 12-300 (334)
40 KOG0306 WD40-repeat-containing 100.0 6E-31 1.3E-35 255.4 25.3 292 16-367 366-665 (888)
41 KOG0640 mRNA cleavage stimulat 100.0 7E-31 1.5E-35 229.9 21.3 295 19-366 108-426 (430)
42 KOG0772 Uncharacterized conser 100.0 2.4E-30 5.1E-35 241.1 25.8 295 20-363 164-484 (641)
43 KOG0288 WD40 repeat protein Ti 100.0 1.5E-31 3.2E-36 242.9 17.2 280 22-364 174-459 (459)
44 KOG0295 WD40 repeat-containing 100.0 7.1E-31 1.5E-35 234.9 20.5 284 36-376 77-374 (406)
45 KOG0276 Vesicle coat complex C 100.0 1.6E-30 3.4E-35 247.5 23.1 243 22-368 12-259 (794)
46 KOG1446 Histone H3 (Lys4) meth 100.0 6.3E-29 1.4E-33 219.3 31.5 282 23-367 14-304 (311)
47 KOG0292 Vesicle coat complex C 100.0 2.9E-30 6.3E-35 254.6 23.2 275 22-372 8-286 (1202)
48 KOG0283 WD40 repeat-containing 100.0 1E-29 2.2E-34 251.5 24.7 244 21-325 265-576 (712)
49 KOG0296 Angio-associated migra 100.0 6.9E-29 1.5E-33 222.3 25.5 274 4-324 89-397 (399)
50 KOG0313 Microtubule binding pr 100.0 6.1E-29 1.3E-33 223.7 25.3 308 13-366 95-418 (423)
51 KOG0284 Polyadenylation factor 100.0 1.3E-30 2.9E-35 236.3 14.4 259 3-325 120-380 (464)
52 KOG0305 Anaphase promoting com 100.0 3.9E-29 8.5E-34 241.3 24.3 260 2-367 198-462 (484)
53 KOG0285 Pleiotropic regulator 100.0 7.2E-29 1.6E-33 221.4 21.7 249 58-371 144-394 (460)
54 KOG0266 WD40 repeat-containing 100.0 3.1E-28 6.8E-33 245.5 29.0 262 3-325 183-454 (456)
55 KOG1539 WD repeat protein [Gen 100.0 9.8E-28 2.1E-32 235.9 31.2 339 2-385 183-636 (910)
56 KOG0292 Vesicle coat complex C 100.0 1.7E-28 3.8E-33 242.1 25.8 291 3-373 33-328 (1202)
57 KOG0289 mRNA splicing factor [ 100.0 4.7E-28 1E-32 221.4 25.4 282 24-365 220-505 (506)
58 KOG0274 Cdc4 and related F-box 100.0 1.7E-27 3.6E-32 239.1 30.2 277 22-372 207-488 (537)
59 KOG0277 Peroxisomal targeting 100.0 2.4E-28 5.1E-33 208.6 19.1 259 4-365 41-308 (311)
60 KOG0276 Vesicle coat complex C 100.0 7.4E-28 1.6E-32 229.4 24.5 273 2-381 36-313 (794)
61 KOG0282 mRNA splicing factor [ 100.0 3E-29 6.5E-34 232.5 14.6 254 56-372 205-468 (503)
62 KOG0316 Conserved WD40 repeat- 100.0 1.3E-27 2.8E-32 201.8 22.7 264 58-388 10-279 (307)
63 cd00200 WD40 WD40 domain, foun 100.0 1.1E-26 2.4E-31 221.9 31.8 250 59-371 3-254 (289)
64 KOG0645 WD40 repeat protein [G 100.0 7E-27 1.5E-31 201.5 26.3 261 3-324 39-310 (312)
65 KOG0268 Sof1-like rRNA process 100.0 1.2E-28 2.5E-33 220.5 15.3 286 21-374 64-353 (433)
66 PLN00181 protein SPA1-RELATED; 100.0 1.4E-26 3E-31 251.1 34.5 264 44-368 457-740 (793)
67 KOG0265 U5 snRNP-specific prot 100.0 4.4E-27 9.4E-32 205.6 23.6 244 64-369 44-299 (338)
68 KOG0641 WD40 repeat protein [G 100.0 5.5E-25 1.2E-29 184.7 34.0 293 16-366 25-349 (350)
69 PTZ00420 coronin; Provisional 100.0 4.8E-26 1E-30 229.3 32.7 238 41-368 50-295 (568)
70 PTZ00421 coronin; Provisional 100.0 4.8E-26 1E-30 228.5 32.1 254 24-370 21-294 (493)
71 KOG0973 Histone transcription 100.0 1E-26 2.2E-31 236.1 26.9 282 23-382 13-341 (942)
72 PTZ00421 coronin; Provisional 100.0 5.1E-26 1.1E-30 228.3 31.9 243 21-366 73-331 (493)
73 KOG2096 WD40 repeat protein [G 100.0 2.1E-26 4.6E-31 202.7 25.0 292 22-366 85-402 (420)
74 KOG0294 WD40 repeat-containing 100.0 2.7E-26 5.9E-31 202.0 24.2 243 16-368 36-283 (362)
75 KOG0281 Beta-TrCP (transducin 100.0 2.8E-28 6.1E-33 216.8 11.9 234 67-372 197-434 (499)
76 KOG2055 WD40 repeat protein [G 100.0 2.7E-26 5.9E-31 211.6 24.8 290 23-367 213-513 (514)
77 KOG0647 mRNA export protein (c 100.0 1.1E-25 2.3E-30 197.2 27.2 278 23-355 27-312 (347)
78 KOG1446 Histone H3 (Lys4) meth 100.0 4.2E-25 9.2E-30 195.2 29.9 260 57-376 6-272 (311)
79 PTZ00420 coronin; Provisional 100.0 1.7E-25 3.6E-30 225.5 31.2 242 3-349 56-319 (568)
80 KOG0310 Conserved WD40 repeat- 100.0 2.9E-26 6.2E-31 213.2 23.2 258 4-369 51-312 (487)
81 KOG1407 WD40 repeat protein [F 99.9 9.9E-26 2.1E-30 193.4 22.9 259 65-385 18-291 (313)
82 KOG1408 WD40 repeat protein [F 99.9 1.5E-25 3.3E-30 216.6 26.8 193 172-372 458-677 (1080)
83 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.6E-31 211.1 17.1 256 2-322 198-458 (459)
84 KOG0278 Serine/threonine kinas 99.9 8.3E-27 1.8E-31 198.6 15.0 212 3-244 83-295 (334)
85 KOG0973 Histone transcription 99.9 7.4E-26 1.6E-30 229.9 24.0 246 21-369 67-358 (942)
86 KOG0299 U3 snoRNP-associated p 99.9 4E-25 8.7E-30 204.1 26.4 285 21-364 140-454 (479)
87 KOG0310 Conserved WD40 repeat- 99.9 4E-26 8.7E-31 212.2 19.9 241 23-369 26-271 (487)
88 KOG0639 Transducin-like enhanc 99.9 4.7E-26 1E-30 211.8 19.6 286 15-365 411-703 (705)
89 KOG0277 Peroxisomal targeting 99.9 1.2E-25 2.5E-30 192.2 19.6 241 27-369 12-268 (311)
90 KOG0264 Nucleosome remodeling 99.9 1.9E-25 4E-30 206.3 21.7 257 15-367 116-405 (422)
91 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-23 2.3E-28 203.7 35.3 279 35-373 1-286 (300)
92 KOG4283 Transcription-coupled 99.9 9.2E-25 2E-29 190.5 24.7 291 22-366 42-365 (397)
93 KOG2106 Uncharacterized conser 99.9 1.6E-24 3.6E-29 201.9 27.8 315 2-365 268-625 (626)
94 KOG1036 Mitotic spindle checkp 99.9 2.3E-24 5E-29 189.6 26.4 260 23-390 13-298 (323)
95 KOG0293 WD40 repeat-containing 99.9 3.9E-25 8.5E-30 201.1 22.0 253 65-378 222-482 (519)
96 KOG1274 WD40 repeat protein [G 99.9 4.7E-24 1E-28 212.6 31.3 250 19-369 9-265 (933)
97 KOG0283 WD40 repeat-containing 99.9 3.2E-25 6.9E-30 219.8 22.2 245 65-368 265-578 (712)
98 KOG4328 WD40 protein [Function 99.9 9.1E-25 2E-29 201.5 22.9 295 22-366 185-495 (498)
99 KOG1408 WD40 repeat protein [F 99.9 7.6E-25 1.7E-29 211.8 23.3 309 3-367 348-714 (1080)
100 KOG0308 Conserved WD40 repeat- 99.9 1.7E-25 3.8E-30 214.5 18.4 287 28-367 29-328 (735)
101 KOG0274 Cdc4 and related F-box 99.9 2E-24 4.3E-29 217.1 25.8 259 3-335 230-493 (537)
102 KOG0313 Microtubule binding pr 99.9 2.7E-24 5.9E-29 193.9 23.5 246 65-369 103-379 (423)
103 KOG0289 mRNA splicing factor [ 99.9 4.2E-24 9.1E-29 195.7 24.9 261 2-324 242-505 (506)
104 KOG1332 Vesicle coat complex C 99.9 4.9E-25 1.1E-29 187.3 17.4 253 21-372 9-292 (299)
105 KOG0300 WD40 repeat-containing 99.9 3.3E-24 7.2E-29 188.8 22.5 284 22-369 147-479 (481)
106 KOG2096 WD40 repeat protein [G 99.9 5.6E-24 1.2E-28 187.5 23.7 297 47-385 63-392 (420)
107 KOG0647 mRNA export protein (c 99.9 5.1E-24 1.1E-28 186.7 23.3 249 2-312 51-313 (347)
108 KOG0275 Conserved WD40 repeat- 99.9 5E-25 1.1E-29 194.4 16.2 246 67-370 213-471 (508)
109 KOG0641 WD40 repeat protein [G 99.9 4E-23 8.7E-28 173.6 26.2 255 21-325 87-349 (350)
110 KOG1539 WD repeat protein [Gen 99.9 1.8E-23 3.9E-28 206.1 28.1 314 13-367 233-649 (910)
111 KOG0643 Translation initiation 99.9 2.2E-23 4.7E-28 179.6 24.2 269 3-325 34-317 (327)
112 KOG2106 Uncharacterized conser 99.9 9.2E-23 2E-27 190.3 29.9 292 2-365 223-520 (626)
113 KOG0305 Anaphase promoting com 99.9 8.3E-24 1.8E-28 204.6 23.6 250 29-383 183-448 (484)
114 KOG0321 WD40 repeat-containing 99.9 9.5E-24 2E-28 202.2 23.6 305 27-368 53-393 (720)
115 KOG0772 Uncharacterized conser 99.9 2.6E-24 5.6E-29 201.0 19.2 231 64-385 164-428 (641)
116 KOG0650 WD40 repeat nucleolar 99.9 1.6E-23 3.4E-28 199.2 24.0 279 21-363 398-732 (733)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.6E-22 7.7E-27 193.0 33.9 277 2-346 12-300 (300)
118 KOG0269 WD40 repeat-containing 99.9 6.4E-25 1.4E-29 214.6 14.5 253 26-377 90-351 (839)
119 KOG0299 U3 snoRNP-associated p 99.9 1.8E-23 3.9E-28 193.2 21.3 243 21-323 200-454 (479)
120 KOG0646 WD40 repeat protein [G 99.9 2.3E-23 4.9E-28 192.9 19.6 264 2-372 19-313 (476)
121 KOG0646 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 192.0 20.2 248 22-349 80-332 (476)
122 KOG0640 mRNA cleavage stimulat 99.9 2.7E-23 5.8E-28 182.6 18.8 249 65-369 110-386 (430)
123 KOG0301 Phospholipase A2-activ 99.9 5.5E-23 1.2E-27 198.9 22.8 251 3-367 37-289 (745)
124 KOG0268 Sof1-like rRNA process 99.9 6.5E-24 1.4E-28 190.3 14.4 259 3-330 91-351 (433)
125 KOG2048 WD40 repeat protein [G 99.9 7.9E-22 1.7E-26 190.6 28.6 255 23-373 25-283 (691)
126 KOG0301 Phospholipase A2-activ 99.9 7.9E-23 1.7E-27 197.8 20.3 235 22-366 13-249 (745)
127 KOG2048 WD40 repeat protein [G 99.9 4.6E-21 1E-25 185.4 31.1 334 3-369 92-508 (691)
128 KOG2445 Nuclear pore complex c 99.9 1.8E-21 3.8E-26 171.2 25.4 259 22-373 12-325 (361)
129 KOG0267 Microtubule severing p 99.9 5.3E-24 1.1E-28 206.7 9.8 233 21-357 26-259 (825)
130 KOG1036 Mitotic spindle checkp 99.9 8.8E-22 1.9E-26 173.4 22.7 245 3-312 37-294 (323)
131 KOG0294 WD40 repeat-containing 99.9 9E-22 1.9E-26 173.7 22.3 215 3-325 65-281 (362)
132 KOG4227 WD40 repeat protein [G 99.9 1.3E-21 2.9E-26 177.1 23.7 293 21-367 54-388 (609)
133 KOG0639 Transducin-like enhanc 99.9 1.9E-22 4.1E-27 188.0 17.9 243 65-370 417-667 (705)
134 KOG1063 RNA polymerase II elon 99.9 3.7E-21 8.1E-26 186.2 27.3 347 10-384 178-636 (764)
135 KOG0267 Microtubule severing p 99.9 5.7E-24 1.2E-28 206.5 7.8 242 35-386 4-258 (825)
136 KOG1274 WD40 repeat protein [G 99.9 6E-21 1.3E-25 190.6 28.8 254 2-363 36-297 (933)
137 KOG1538 Uncharacterized conser 99.9 1.2E-21 2.5E-26 188.6 22.7 275 25-367 14-294 (1081)
138 KOG2055 WD40 repeat protein [G 99.9 9.1E-22 2E-26 182.0 21.2 260 67-383 213-499 (514)
139 KOG0300 WD40 repeat-containing 99.9 1.7E-21 3.7E-26 171.7 19.0 270 56-369 139-431 (481)
140 KOG2919 Guanine nucleotide-bin 99.9 9E-21 2E-25 167.8 23.3 278 26-356 52-360 (406)
141 KOG0269 WD40 repeat-containing 99.9 3.9E-22 8.5E-27 195.3 15.4 242 24-368 40-298 (839)
142 KOG4378 Nuclear protein COP1 [ 99.9 1.8E-21 3.8E-26 181.4 18.6 281 3-348 14-305 (673)
143 KOG0308 Conserved WD40 repeat- 99.9 1.1E-21 2.4E-26 188.6 17.4 239 72-368 29-287 (735)
144 KOG1063 RNA polymerase II elon 99.9 1.2E-20 2.5E-25 182.9 24.2 318 2-372 35-398 (764)
145 KOG2919 Guanine nucleotide-bin 99.9 1.5E-20 3.2E-25 166.5 22.0 250 70-371 52-332 (406)
146 KOG0650 WD40 repeat nucleolar 99.9 6.5E-21 1.4E-25 181.6 20.2 259 65-364 398-678 (733)
147 KOG0264 Nucleosome remodeling 99.9 1.2E-20 2.6E-25 174.6 19.4 237 2-325 148-404 (422)
148 KOG1332 Vesicle coat complex C 99.9 4.5E-21 9.7E-26 163.4 14.1 220 65-382 9-272 (299)
149 KOG4283 Transcription-coupled 99.9 1.6E-20 3.5E-25 164.2 17.9 215 66-370 42-280 (397)
150 KOG0270 WD40 repeat-containing 99.9 1.8E-20 3.8E-25 172.9 19.0 242 26-369 176-452 (463)
151 KOG0322 G-protein beta subunit 99.9 1.5E-20 3.3E-25 161.9 17.1 292 21-365 12-322 (323)
152 KOG1009 Chromatin assembly com 99.8 1.2E-19 2.7E-24 165.5 20.3 293 22-369 12-375 (434)
153 KOG0302 Ribosome Assembly prot 99.8 3.2E-19 6.9E-24 161.2 21.6 245 19-360 147-433 (440)
154 KOG0307 Vesicle coat complex C 99.8 1.5E-20 3.3E-25 192.4 12.7 247 23-369 64-330 (1049)
155 PRK11028 6-phosphogluconolacto 99.8 1E-17 2.2E-22 163.7 32.1 278 40-367 7-305 (330)
156 KOG1445 Tumor-specific antigen 99.8 5.5E-19 1.2E-23 169.5 22.0 146 192-369 600-753 (1012)
157 KOG4378 Nuclear protein COP1 [ 99.8 5.2E-19 1.1E-23 165.1 21.1 264 44-369 11-283 (673)
158 KOG1034 Transcriptional repres 99.8 7.7E-19 1.7E-23 156.1 20.2 302 22-366 37-383 (385)
159 KOG1587 Cytoplasmic dynein int 99.8 1.6E-18 3.5E-23 173.1 23.5 276 2-367 223-517 (555)
160 KOG0321 WD40 repeat-containing 99.8 9.1E-19 2E-23 168.4 20.5 294 20-365 97-444 (720)
161 KOG1188 WD40 repeat protein [G 99.8 8.6E-19 1.9E-23 156.7 18.8 284 36-365 41-345 (376)
162 KOG1007 WD repeat protein TSSC 99.8 1.3E-18 2.9E-23 151.9 18.8 248 22-367 62-362 (370)
163 KOG2110 Uncharacterized conser 99.8 1.2E-16 2.5E-21 144.7 31.0 238 24-325 6-248 (391)
164 KOG1334 WD40 repeat protein [G 99.8 2.4E-19 5.2E-24 167.2 14.1 309 22-369 141-469 (559)
165 KOG0302 Ribosome Assembly prot 99.8 7.1E-19 1.5E-23 159.0 16.4 217 111-367 154-379 (440)
166 KOG0270 WD40 repeat-containing 99.8 5E-18 1.1E-22 156.8 20.9 261 72-370 130-408 (463)
167 KOG1963 WD40 repeat protein [G 99.8 5.4E-17 1.2E-21 162.4 28.5 302 22-368 204-540 (792)
168 PRK11028 6-phosphogluconolacto 99.8 1.7E-16 3.6E-21 155.2 31.8 273 3-325 14-304 (330)
169 KOG4328 WD40 protein [Function 99.8 7.6E-18 1.7E-22 156.1 20.3 247 67-369 186-453 (498)
170 KOG1272 WD40-repeat-containing 99.8 3.7E-19 8.1E-24 164.9 11.4 316 25-423 131-452 (545)
171 KOG0642 Cell-cycle nuclear pro 99.8 1.4E-18 3.1E-23 165.0 15.4 270 18-376 289-571 (577)
172 COG2319 FOG: WD40 repeat [Gene 99.8 8.5E-16 1.8E-20 155.6 37.0 301 2-367 135-443 (466)
173 KOG4497 Uncharacterized conser 99.8 3.5E-17 7.6E-22 145.6 22.7 320 29-368 14-393 (447)
174 KOG0303 Actin-binding protein 99.8 2E-17 4.3E-22 150.6 21.5 214 65-371 79-299 (472)
175 KOG0644 Uncharacterized conser 99.8 1.9E-19 4.2E-24 177.7 9.3 248 21-382 188-454 (1113)
176 KOG2445 Nuclear pore complex c 99.8 3.4E-17 7.3E-22 144.5 21.6 262 1-334 35-331 (361)
177 KOG0771 Prolactin regulatory e 99.8 2.8E-18 6E-23 158.0 15.1 199 27-244 148-352 (398)
178 KOG0307 Vesicle coat complex C 99.8 4.9E-19 1.1E-23 181.5 11.2 250 27-372 10-290 (1049)
179 KOG1310 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 157.1 19.4 212 21-245 48-302 (758)
180 KOG1517 Guanine nucleotide bin 99.8 5.1E-17 1.1E-21 164.7 23.9 290 25-369 1066-1384(1387)
181 KOG0649 WD40 repeat protein [G 99.8 9.4E-17 2E-21 137.1 21.6 253 24-367 11-275 (325)
182 KOG0290 Conserved WD40 repeat- 99.8 4E-17 8.7E-22 142.9 19.8 264 15-369 36-321 (364)
183 KOG1273 WD40 repeat protein [G 99.8 3.3E-17 7.1E-22 144.9 18.8 198 70-366 26-226 (405)
184 COG2319 FOG: WD40 repeat [Gene 99.8 5.8E-15 1.3E-19 149.5 37.6 287 21-369 63-362 (466)
185 KOG0303 Actin-binding protein 99.8 7.1E-17 1.5E-21 147.0 19.3 227 21-349 79-322 (472)
186 KOG1240 Protein kinase contain 99.7 4.6E-16 1E-20 160.3 25.5 207 22-246 1047-1273(1431)
187 KOG4227 WD40 repeat protein [G 99.7 3.6E-16 7.7E-21 142.2 21.2 292 1-325 78-387 (609)
188 KOG1963 WD40 repeat protein [G 99.7 1.4E-15 3E-20 152.4 26.9 294 28-368 21-324 (792)
189 KOG1538 Uncharacterized conser 99.7 1E-16 2.2E-21 154.9 17.9 254 3-325 35-293 (1081)
190 PF02239 Cytochrom_D1: Cytochr 99.7 3.4E-15 7.4E-20 145.5 28.7 316 3-372 18-353 (369)
191 KOG2111 Uncharacterized conser 99.7 1.1E-14 2.4E-19 129.6 28.9 239 25-325 7-256 (346)
192 KOG0290 Conserved WD40 repeat- 99.7 3.8E-16 8.2E-21 136.8 19.0 239 20-362 93-361 (364)
193 KOG1034 Transcriptional repres 99.7 2.3E-16 5E-21 140.5 17.8 262 22-324 88-382 (385)
194 KOG1009 Chromatin assembly com 99.7 6.9E-16 1.5E-20 141.3 21.2 260 22-325 64-372 (434)
195 PRK01742 tolB translocation pr 99.7 4.2E-16 9.1E-21 157.1 22.0 233 44-347 183-426 (429)
196 KOG1523 Actin-related protein 99.7 4.9E-16 1.1E-20 138.0 18.9 252 23-359 10-271 (361)
197 PRK03629 tolB translocation pr 99.7 4.3E-15 9.2E-20 149.4 27.6 239 45-347 179-428 (429)
198 KOG1188 WD40 repeat protein [G 99.7 5.8E-16 1.3E-20 138.7 17.6 271 3-325 52-346 (376)
199 PRK01742 tolB translocation pr 99.7 1.6E-15 3.4E-20 152.9 23.2 209 2-244 185-399 (429)
200 KOG2394 WD40 protein DMR-N9 [G 99.7 1.3E-15 2.9E-20 144.1 20.8 244 26-346 126-384 (636)
201 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-16 3.4E-21 151.3 13.7 223 3-244 318-559 (577)
202 KOG1007 WD repeat protein TSSC 99.7 8.6E-16 1.9E-20 134.5 16.6 230 22-325 122-361 (370)
203 KOG2110 Uncharacterized conser 99.7 1.6E-14 3.4E-19 131.1 25.2 236 67-369 5-251 (391)
204 PRK04922 tolB translocation pr 99.7 1.4E-14 2.9E-19 146.5 25.4 238 45-346 184-432 (433)
205 KOG1445 Tumor-specific antigen 99.7 7.2E-16 1.6E-20 148.3 14.8 169 10-244 613-796 (1012)
206 PRK02889 tolB translocation pr 99.7 3.7E-14 7.9E-19 142.8 27.2 239 45-347 176-425 (427)
207 PF02239 Cytochrom_D1: Cytochr 99.7 2.1E-13 4.6E-18 132.9 31.1 297 36-382 6-331 (369)
208 KOG2139 WD40 repeat protein [G 99.7 3.7E-14 7.9E-19 128.2 23.4 282 3-366 122-431 (445)
209 KOG2315 Predicted translation 99.7 2.3E-13 5E-18 130.1 30.0 282 25-367 75-391 (566)
210 KOG2321 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 138.8 21.2 299 14-377 42-357 (703)
211 KOG1524 WD40 repeat-containing 99.7 3.1E-15 6.7E-20 141.4 16.5 253 66-382 13-272 (737)
212 KOG0771 Prolactin regulatory e 99.7 1.8E-15 4E-20 139.5 14.7 160 175-367 188-355 (398)
213 KOG1524 WD40 repeat-containing 99.7 3.5E-15 7.7E-20 141.0 16.0 207 36-362 76-282 (737)
214 KOG1517 Guanine nucleotide bin 99.7 2.7E-14 5.8E-19 145.3 23.4 256 69-369 1066-1336(1387)
215 PRK05137 tolB translocation pr 99.6 1.3E-13 2.8E-18 139.6 28.2 238 45-347 182-433 (435)
216 KOG4497 Uncharacterized conser 99.6 1.1E-13 2.4E-18 123.5 23.9 291 24-359 49-425 (447)
217 KOG3881 Uncharacterized conser 99.6 3.5E-14 7.6E-19 129.7 20.3 244 23-369 55-323 (412)
218 KOG1354 Serine/threonine prote 99.6 3.3E-14 7.2E-19 127.6 19.2 294 23-369 25-362 (433)
219 PF10282 Lactonase: Lactonase, 99.6 8.8E-12 1.9E-16 121.9 36.4 292 38-366 2-322 (345)
220 KOG1587 Cytoplasmic dynein int 99.6 1.9E-13 4.2E-18 136.9 24.8 236 88-368 221-474 (555)
221 KOG1272 WD40-repeat-containing 99.6 1.7E-15 3.8E-20 140.9 9.3 232 67-365 129-361 (545)
222 KOG2139 WD40 repeat protein [G 99.6 8.2E-14 1.8E-18 126.0 19.7 238 24-356 99-365 (445)
223 PRK03629 tolB translocation pr 99.6 2.5E-13 5.4E-18 136.6 25.6 210 3-244 181-404 (429)
224 PF08662 eIF2A: Eukaryotic tra 99.6 1.1E-13 2.5E-18 122.5 18.7 153 176-367 8-180 (194)
225 TIGR02800 propeller_TolB tol-p 99.6 9.3E-13 2E-17 133.4 27.6 236 45-344 170-416 (417)
226 COG5354 Uncharacterized protei 99.6 2.9E-12 6.3E-17 121.2 27.6 313 5-369 16-398 (561)
227 PRK04922 tolB translocation pr 99.6 4.5E-13 9.8E-18 135.4 23.8 211 2-244 185-409 (433)
228 PRK04792 tolB translocation pr 99.6 1.8E-12 3.9E-17 131.0 27.4 240 46-347 199-447 (448)
229 KOG2111 Uncharacterized conser 99.6 8.3E-12 1.8E-16 111.5 27.8 179 45-247 75-257 (346)
230 KOG0649 WD40 repeat protein [G 99.6 1.5E-12 3.2E-17 111.7 21.8 239 16-364 55-314 (325)
231 PF08662 eIF2A: Eukaryotic tra 99.5 6.2E-13 1.3E-17 117.8 19.3 147 27-244 9-177 (194)
232 PRK00178 tolB translocation pr 99.5 3.8E-12 8.3E-17 129.1 27.5 238 46-347 180-428 (430)
233 KOG0322 G-protein beta subunit 99.5 2.2E-13 4.8E-18 118.1 15.4 265 3-324 37-322 (323)
234 KOG0644 Uncharacterized conser 99.5 1.3E-14 2.8E-19 144.1 8.4 252 1-328 212-472 (1113)
235 PF10282 Lactonase: Lactonase, 99.5 8.1E-11 1.8E-15 115.1 34.9 270 22-344 35-345 (345)
236 PRK02889 tolB translocation pr 99.5 1.7E-12 3.8E-17 130.7 23.5 204 2-238 177-392 (427)
237 PRK05137 tolB translocation pr 99.5 5.5E-12 1.2E-16 127.7 26.2 219 89-368 182-414 (435)
238 KOG1240 Protein kinase contain 99.5 3.2E-12 6.9E-17 132.6 24.0 271 50-371 1034-1339(1431)
239 KOG1310 WD40 repeat protein [G 99.5 3.5E-13 7.5E-18 128.1 15.3 220 59-372 44-309 (758)
240 KOG3881 Uncharacterized conser 99.5 1.6E-12 3.4E-17 119.0 19.0 196 24-244 106-318 (412)
241 KOG2315 Predicted translation 99.5 2.7E-11 5.8E-16 116.2 27.9 294 24-385 35-373 (566)
242 KOG1334 WD40 repeat protein [G 99.5 2.4E-13 5.2E-18 127.6 13.7 264 65-372 140-430 (559)
243 KOG1523 Actin-related protein 99.5 1.6E-12 3.5E-17 115.9 18.0 204 67-369 10-239 (361)
244 COG2706 3-carboxymuconate cycl 99.5 1.6E-10 3.4E-15 105.8 30.8 289 44-368 15-323 (346)
245 KOG2314 Translation initiation 99.5 2E-11 4.3E-16 116.7 25.1 299 26-367 213-574 (698)
246 KOG2394 WD40 protein DMR-N9 [G 99.5 9.1E-13 2E-17 125.2 15.6 172 182-368 182-364 (636)
247 COG2706 3-carboxymuconate cycl 99.5 6E-10 1.3E-14 102.0 32.6 288 3-345 18-345 (346)
248 PRK01029 tolB translocation pr 99.5 6.5E-11 1.4E-15 118.7 27.5 227 89-369 165-406 (428)
249 PRK01029 tolB translocation pr 99.5 4.3E-11 9.4E-16 120.0 26.1 224 22-348 183-426 (428)
250 TIGR02658 TTQ_MADH_Hv methylam 99.4 8.5E-10 1.8E-14 105.2 33.0 269 2-332 28-338 (352)
251 KOG2321 WD40 repeat protein [G 99.4 1.8E-11 3.8E-16 117.5 20.6 255 65-372 49-308 (703)
252 TIGR02658 TTQ_MADH_Hv methylam 99.4 3E-09 6.4E-14 101.6 35.6 275 45-374 27-338 (352)
253 KOG0974 WD-repeat protein WDR6 99.4 4.8E-12 1E-16 129.5 17.4 276 22-368 6-290 (967)
254 TIGR02800 propeller_TolB tol-p 99.4 5.2E-11 1.1E-15 120.7 24.4 204 3-238 172-386 (417)
255 KOG2041 WD40 repeat protein [G 99.4 8.1E-11 1.8E-15 115.7 21.5 292 22-375 13-346 (1189)
256 KOG4547 WD40 repeat-containing 99.4 7.3E-11 1.6E-15 114.1 20.7 207 77-367 3-221 (541)
257 PRK00178 tolB translocation pr 99.4 1.1E-10 2.5E-15 118.3 23.4 210 3-244 181-404 (430)
258 KOG1354 Serine/threonine prote 99.4 4.6E-11 1E-15 107.7 17.7 214 23-245 84-358 (433)
259 KOG1409 Uncharacterized conser 99.4 3.1E-11 6.8E-16 108.9 15.8 312 24-367 69-395 (404)
260 PRK04792 tolB translocation pr 99.3 1.9E-10 4.1E-15 116.3 23.0 194 22-244 216-423 (448)
261 KOG4547 WD40 repeat-containing 99.3 1.1E-10 2.5E-15 112.8 19.1 176 2-244 16-218 (541)
262 PRK04043 tolB translocation pr 99.3 5.1E-09 1.1E-13 104.4 28.4 233 45-344 169-419 (419)
263 COG4946 Uncharacterized protei 99.3 5.1E-08 1.1E-12 92.1 31.9 156 184-381 331-503 (668)
264 COG5170 CDC55 Serine/threonine 99.3 3E-10 6.6E-15 101.1 16.1 298 22-367 25-368 (460)
265 TIGR03300 assembly_YfgL outer 99.2 8.8E-09 1.9E-13 102.7 28.4 269 34-363 104-376 (377)
266 KOG0974 WD-repeat protein WDR6 99.2 3.4E-09 7.4E-14 109.1 24.9 131 3-142 157-289 (967)
267 KOG4190 Uncharacterized conser 99.2 1.4E-10 3.1E-15 110.7 12.5 285 20-362 732-1032(1034)
268 PLN02919 haloacid dehalogenase 99.2 2.6E-08 5.7E-13 110.2 31.9 276 27-370 571-892 (1057)
269 COG5354 Uncharacterized protei 99.2 2.9E-09 6.3E-14 101.3 20.6 287 2-358 109-421 (561)
270 KOG1409 Uncharacterized conser 99.2 1.5E-09 3.2E-14 98.2 16.7 251 13-367 13-271 (404)
271 KOG1064 RAVE (regulator of V-A 99.2 1.8E-10 3.9E-15 123.9 12.7 195 24-333 2209-2407(2439)
272 KOG0280 Uncharacterized conser 99.2 5.5E-09 1.2E-13 92.7 19.4 243 24-368 70-335 (339)
273 KOG1832 HIV-1 Vpr-binding prot 99.2 7.9E-11 1.7E-15 118.4 8.5 187 22-244 1100-1289(1516)
274 COG4946 Uncharacterized protei 99.2 7.1E-08 1.5E-12 91.1 27.3 172 34-235 331-507 (668)
275 KOG1912 WD40 repeat protein [G 99.2 7.9E-09 1.7E-13 103.0 21.8 278 16-367 8-305 (1062)
276 TIGR03300 assembly_YfgL outer 99.1 4.7E-08 1E-12 97.5 28.1 270 34-373 64-345 (377)
277 PF08450 SGL: SMP-30/Gluconola 99.1 3.1E-07 6.7E-12 85.6 31.5 228 28-354 4-243 (246)
278 KOG1064 RAVE (regulator of V-A 99.1 4.5E-10 9.9E-15 120.9 12.6 192 67-371 2208-2403(2439)
279 KOG0309 Conserved WD40 repeat- 99.1 9.4E-10 2E-14 108.8 13.7 287 23-367 24-340 (1081)
280 PF04762 IKI3: IKI3 family; I 99.1 1.2E-07 2.6E-12 103.0 29.6 277 23-371 120-461 (928)
281 KOG2314 Translation initiation 99.1 2E-08 4.3E-13 96.6 20.1 289 2-353 283-599 (698)
282 PF04762 IKI3: IKI3 family; I 99.1 1.6E-07 3.5E-12 102.0 29.2 284 24-364 76-377 (928)
283 KOG1912 WD40 repeat protein [G 99.0 3.3E-08 7.2E-13 98.7 20.8 234 4-244 38-302 (1062)
284 KOG2041 WD40 repeat protein [G 99.0 1.7E-08 3.7E-13 99.7 18.1 208 13-237 63-279 (1189)
285 PRK04043 tolB translocation pr 99.0 6.9E-08 1.5E-12 96.3 22.5 183 24-237 188-388 (419)
286 PF15492 Nbas_N: Neuroblastoma 99.0 4.3E-07 9.3E-12 81.2 24.3 148 29-194 3-168 (282)
287 KOG4532 WD40-like repeat conta 99.0 1.4E-07 3E-12 82.8 20.6 197 27-244 71-280 (344)
288 PF07433 DUF1513: Protein of u 99.0 4.7E-07 1E-11 83.5 25.3 252 25-360 6-279 (305)
289 KOG0882 Cyclophilin-related pe 99.0 2.2E-08 4.7E-13 94.0 15.4 284 19-333 5-314 (558)
290 KOG4714 Nucleoporin [Nuclear s 99.0 3.5E-08 7.5E-13 86.2 15.4 195 26-244 39-252 (319)
291 KOG0280 Uncharacterized conser 98.9 1.9E-07 4.1E-12 83.1 19.1 153 176-366 124-284 (339)
292 PLN02919 haloacid dehalogenase 98.9 9.9E-07 2.1E-11 97.9 27.7 216 26-245 626-887 (1057)
293 KOG3914 WD repeat protein WDR4 98.9 3.6E-08 7.8E-13 91.5 13.7 160 175-372 64-229 (390)
294 PF13360 PQQ_2: PQQ-like domai 98.9 2.1E-06 4.5E-11 79.6 25.7 222 44-329 2-235 (238)
295 KOG2695 WD40 repeat protein [G 98.9 7.5E-09 1.6E-13 93.8 8.4 151 127-336 228-388 (425)
296 PRK11138 outer membrane biogen 98.8 6E-06 1.3E-10 82.8 27.7 269 35-365 120-393 (394)
297 KOG4532 WD40-like repeat conta 98.8 2.5E-06 5.3E-11 75.2 21.1 260 43-366 50-331 (344)
298 PF07433 DUF1513: Protein of u 98.8 2.4E-06 5.2E-11 78.9 22.0 213 3-237 30-277 (305)
299 KOG4190 Uncharacterized conser 98.7 5.6E-08 1.2E-12 93.4 10.4 239 65-364 733-986 (1034)
300 KOG3914 WD repeat protein WDR4 98.7 2.2E-07 4.9E-12 86.3 13.4 151 69-244 64-221 (390)
301 PF00400 WD40: WD domain, G-be 98.7 4.4E-08 9.5E-13 61.8 6.1 39 326-364 1-39 (39)
302 KOG1645 RING-finger-containing 98.7 3.8E-06 8.2E-11 78.2 20.9 273 47-367 175-462 (463)
303 KOG1275 PAB-dependent poly(A) 98.7 1.6E-07 3.4E-12 95.7 12.9 150 26-202 180-341 (1118)
304 KOG1920 IkappaB kinase complex 98.7 8.3E-06 1.8E-10 86.3 25.5 284 24-365 69-364 (1265)
305 KOG2114 Vacuolar assembly/sort 98.7 9.3E-06 2E-10 82.9 24.1 219 25-338 27-258 (933)
306 KOG2066 Vacuolar assembly/sort 98.6 1.4E-06 3.1E-11 87.9 16.8 147 22-244 38-185 (846)
307 KOG1832 HIV-1 Vpr-binding prot 98.6 1.4E-07 3.1E-12 95.6 9.8 158 58-247 1094-1256(1516)
308 PF08450 SGL: SMP-30/Gluconola 98.6 4.6E-05 1E-09 71.0 26.2 186 26-235 42-244 (246)
309 PF15492 Nbas_N: Neuroblastoma 98.6 2.9E-05 6.3E-10 69.7 22.5 174 175-375 45-268 (282)
310 PRK11138 outer membrane biogen 98.6 1.5E-05 3.2E-10 79.9 23.7 273 34-370 68-357 (394)
311 KOG0309 Conserved WD40 repeat- 98.6 3.2E-07 6.9E-12 91.4 10.1 145 187-368 83-234 (1081)
312 PF13360 PQQ_2: PQQ-like domai 98.6 9.5E-05 2.1E-09 68.5 26.4 219 88-369 2-233 (238)
313 KOG4714 Nucleoporin [Nuclear s 98.5 7.7E-07 1.7E-11 78.0 10.6 68 297-367 184-255 (319)
314 PF06433 Me-amine-dh_H: Methyl 98.5 0.00015 3.4E-09 67.9 26.5 270 3-371 19-325 (342)
315 PF08553 VID27: VID27 cytoplas 98.5 4.9E-05 1.1E-09 79.8 25.6 149 80-246 494-647 (794)
316 KOG1920 IkappaB kinase complex 98.5 2.4E-05 5.2E-10 83.0 23.2 235 67-368 68-324 (1265)
317 KOG1275 PAB-dependent poly(A) 98.5 1.8E-06 3.9E-11 88.3 14.6 179 123-364 147-340 (1118)
318 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00028 6E-09 62.4 25.3 104 34-143 62-167 (354)
319 PF00400 WD40: WD domain, G-be 98.5 3.6E-07 7.7E-12 57.5 5.7 38 56-95 2-39 (39)
320 KOG2695 WD40 repeat protein [G 98.5 4.2E-07 9.2E-12 82.7 8.0 126 23-213 252-386 (425)
321 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00018 3.9E-09 70.8 26.2 286 32-384 1-345 (353)
322 PF14583 Pectate_lyase22: Olig 98.4 0.00071 1.5E-08 64.8 28.5 298 6-366 15-381 (386)
323 COG5170 CDC55 Serine/threonine 98.4 2E-06 4.4E-11 77.2 10.7 245 67-369 26-312 (460)
324 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00022 4.9E-09 70.1 26.4 284 3-354 25-345 (353)
325 KOG3621 WD40 repeat-containing 98.4 5.3E-05 1.1E-09 76.0 20.9 126 20-204 30-155 (726)
326 PRK02888 nitrous-oxide reducta 98.4 3E-05 6.4E-10 78.5 19.0 198 31-325 200-404 (635)
327 KOG3617 WD40 and TPR repeat-co 98.4 5E-06 1.1E-10 84.3 13.1 291 25-356 61-375 (1416)
328 COG0823 TolB Periplasmic compo 98.4 4.2E-05 9E-10 76.1 19.0 238 46-346 174-423 (425)
329 cd00216 PQQ_DH Dehydrogenases 98.4 0.00067 1.4E-08 69.8 28.6 208 35-244 61-317 (488)
330 COG0823 TolB Periplasmic compo 98.3 0.00011 2.3E-09 73.2 20.4 162 175-371 194-363 (425)
331 PF04053 Coatomer_WDAD: Coatom 98.3 0.00048 1E-08 68.8 24.6 231 25-368 34-264 (443)
332 KOG1645 RING-finger-containing 98.3 6.1E-05 1.3E-09 70.5 16.7 75 22-99 192-268 (463)
333 PF11768 DUF3312: Protein of u 98.3 0.00022 4.7E-09 70.6 21.5 68 175-245 261-328 (545)
334 PRK02888 nitrous-oxide reducta 98.3 0.00043 9.4E-09 70.3 23.5 176 181-367 200-405 (635)
335 PF11768 DUF3312: Protein of u 98.2 0.00099 2.1E-08 66.1 24.8 90 197-325 238-329 (545)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.011 2.3E-07 61.3 33.8 205 35-244 69-331 (527)
337 PF03178 CPSF_A: CPSF A subuni 98.2 0.0008 1.7E-08 65.4 24.4 218 3-244 4-263 (321)
338 PF04841 Vps16_N: Vps16, N-ter 98.2 0.00088 1.9E-08 66.9 24.8 65 295-364 219-285 (410)
339 COG3391 Uncharacterized conser 98.2 0.0047 1E-07 61.4 28.9 247 25-370 32-287 (381)
340 KOG0882 Cyclophilin-related pe 98.2 0.00012 2.5E-09 69.6 16.2 257 66-371 8-310 (558)
341 PF00780 CNH: CNH domain; Int 98.1 0.0027 5.8E-08 60.2 26.0 149 33-211 5-173 (275)
342 PF08596 Lgl_C: Lethal giant l 98.1 0.0014 3.1E-08 64.6 24.3 262 69-370 3-294 (395)
343 KOG2066 Vacuolar assembly/sort 98.1 5.6E-05 1.2E-09 76.8 13.9 143 175-370 41-191 (846)
344 PF14583 Pectate_lyase22: Olig 98.1 0.0039 8.6E-08 59.9 25.1 210 2-237 61-303 (386)
345 PF06977 SdiA-regulated: SdiA- 98.1 0.0069 1.5E-07 55.5 25.8 205 67-363 21-247 (248)
346 KOG1008 Uncharacterized conser 98.1 1.1E-06 2.3E-11 86.6 0.9 160 23-245 56-224 (783)
347 KOG3617 WD40 and TPR repeat-co 98.0 3.5E-05 7.6E-10 78.5 11.1 69 175-244 61-129 (1416)
348 PF02897 Peptidase_S9_N: Proly 98.0 0.011 2.4E-07 59.7 29.2 248 26-369 126-407 (414)
349 KOG2395 Protein involved in va 98.0 0.0014 2.9E-08 64.1 20.2 151 79-246 345-500 (644)
350 KOG2114 Vacuolar assembly/sort 98.0 0.0011 2.4E-08 68.3 20.4 124 216-374 125-251 (933)
351 COG3386 Gluconolactonase [Carb 98.0 0.0091 2E-07 56.7 25.0 227 74-355 31-274 (307)
352 cd00216 PQQ_DH Dehydrogenases 98.0 0.019 4.1E-07 59.2 29.5 163 36-212 111-328 (488)
353 COG3391 Uncharacterized conser 97.9 0.0054 1.2E-07 60.9 23.8 197 26-244 76-281 (381)
354 PF08596 Lgl_C: Lethal giant l 97.9 0.0095 2.1E-07 58.9 24.9 202 25-244 3-288 (395)
355 PF06433 Me-amine-dh_H: Methyl 97.9 0.0034 7.5E-08 59.1 20.3 135 45-244 17-163 (342)
356 PF03178 CPSF_A: CPSF A subuni 97.8 0.021 4.6E-07 55.4 26.5 172 45-244 2-200 (321)
357 PF06977 SdiA-regulated: SdiA- 97.8 0.018 4E-07 52.7 23.1 199 24-243 22-247 (248)
358 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.025 5.4E-07 50.5 26.7 182 35-244 23-205 (354)
359 KOG1897 Damage-specific DNA bi 97.8 0.039 8.6E-07 58.3 27.6 282 25-369 585-901 (1096)
360 KOG1008 Uncharacterized conser 97.8 9.4E-06 2E-10 80.2 1.4 154 175-367 104-276 (783)
361 PF04053 Coatomer_WDAD: Coatom 97.7 0.0041 8.9E-08 62.3 19.9 137 176-362 71-219 (443)
362 KOG4640 Anaphase-promoting com 97.6 0.00029 6.2E-09 70.0 9.1 92 24-118 21-115 (665)
363 PF08553 VID27: VID27 cytoplas 97.6 0.0015 3.3E-08 69.0 14.4 147 186-366 494-647 (794)
364 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.025 5.4E-07 55.8 21.2 76 297-375 312-407 (415)
365 COG3490 Uncharacterized protei 97.5 0.008 1.7E-07 54.3 16.0 219 4-244 94-346 (366)
366 PRK13616 lipoprotein LpqB; Pro 97.5 0.015 3.2E-07 60.8 20.7 132 195-361 430-563 (591)
367 KOG4640 Anaphase-promoting com 97.5 0.00067 1.4E-08 67.5 9.6 95 67-226 20-115 (665)
368 PF04841 Vps16_N: Vps16, N-ter 97.5 0.072 1.6E-06 53.4 24.3 53 175-227 218-270 (410)
369 smart00320 WD40 WD40 repeats. 97.5 0.00037 8.1E-09 42.7 5.4 38 327-364 3-40 (40)
370 PF14727 PHTB1_N: PTHB1 N-term 97.5 0.14 3.1E-06 50.7 30.8 148 34-202 36-203 (418)
371 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.013 2.9E-07 45.5 14.2 101 70-199 2-110 (111)
372 KOG3621 WD40 repeat-containing 97.4 0.0016 3.4E-08 65.8 11.1 119 175-325 35-154 (726)
373 COG3204 Uncharacterized protei 97.4 0.11 2.4E-06 47.6 21.5 176 67-334 85-272 (316)
374 PF05694 SBP56: 56kDa selenium 97.4 0.17 3.7E-06 49.4 24.5 228 34-325 86-342 (461)
375 PRK13616 lipoprotein LpqB; Pro 97.3 0.028 6.1E-07 58.7 20.2 157 25-244 351-523 (591)
376 COG3490 Uncharacterized protei 97.3 0.053 1.2E-06 49.2 18.7 238 97-370 56-314 (366)
377 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.33 7.2E-06 50.4 27.9 159 36-208 121-338 (527)
378 KOG2444 WD40 repeat protein [G 97.2 0.00063 1.4E-08 59.4 5.6 140 187-367 32-178 (238)
379 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.035 7.6E-07 43.1 14.4 102 26-135 2-108 (111)
380 smart00320 WD40 WD40 repeats. 97.2 0.0011 2.4E-08 40.4 5.2 38 56-95 3-40 (40)
381 PF05694 SBP56: 56kDa selenium 97.2 0.031 6.7E-07 54.4 16.9 202 31-234 137-391 (461)
382 KOG2079 Vacuolar assembly/sort 97.2 0.0076 1.7E-07 64.0 13.6 76 34-110 98-173 (1206)
383 PF02897 Peptidase_S9_N: Proly 97.1 0.069 1.5E-06 54.0 20.6 163 175-369 125-312 (414)
384 PF14727 PHTB1_N: PTHB1 N-term 97.1 0.37 8E-06 47.9 27.1 148 79-244 37-202 (418)
385 KOG4499 Ca2+-binding protein R 97.1 0.17 3.7E-06 44.7 18.6 47 297-346 216-263 (310)
386 KOG2395 Protein involved in va 97.0 0.011 2.4E-07 58.0 11.9 149 183-366 343-500 (644)
387 PF05096 Glu_cyclase_2: Glutam 96.9 0.32 6.9E-06 44.6 23.8 197 15-235 34-249 (264)
388 PF10647 Gmad1: Lipoprotein Lp 96.9 0.36 7.8E-06 44.9 23.2 170 175-374 67-243 (253)
389 PF07995 GSDH: Glucose / Sorbo 96.9 0.51 1.1E-05 45.9 22.9 56 303-361 270-330 (331)
390 KOG2079 Vacuolar assembly/sort 96.7 0.02 4.3E-07 61.0 12.5 72 23-96 130-202 (1206)
391 PF14870 PSII_BNR: Photosynthe 96.7 0.2 4.4E-06 47.4 18.0 155 24-243 145-301 (302)
392 PF00780 CNH: CNH domain; Int 96.7 0.59 1.3E-05 44.1 25.7 247 78-373 6-262 (275)
393 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0074 1.6E-07 39.0 5.6 31 23-53 11-41 (47)
394 PHA02713 hypothetical protein; 96.6 0.23 5E-06 52.1 19.8 72 303-377 463-543 (557)
395 PHA02713 hypothetical protein; 96.6 0.092 2E-06 55.0 16.8 60 184-244 463-531 (557)
396 PF10647 Gmad1: Lipoprotein Lp 96.6 0.12 2.6E-06 48.1 15.7 147 175-356 25-185 (253)
397 COG3386 Gluconolactonase [Carb 96.6 0.46 1E-05 45.3 19.5 193 24-235 66-274 (307)
398 PF05096 Glu_cyclase_2: Glutam 96.5 0.66 1.4E-05 42.6 24.7 118 58-244 36-155 (264)
399 PRK10115 protease 2; Provision 96.5 1.7 3.7E-05 46.9 26.4 73 68-143 127-209 (686)
400 PF15390 DUF4613: Domain of un 96.4 0.25 5.3E-06 49.8 16.9 161 67-244 19-184 (671)
401 COG5276 Uncharacterized conser 96.4 0.77 1.7E-05 42.2 29.1 211 5-244 68-283 (370)
402 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.4E-07 38.2 5.2 36 336-371 11-46 (47)
403 PRK10115 protease 2; Provision 96.3 2.1 4.6E-05 46.1 32.9 72 24-99 127-209 (686)
404 KOG4441 Proteins containing BT 96.3 0.45 9.7E-06 49.9 19.3 67 32-100 282-360 (571)
405 COG3204 Uncharacterized protei 96.3 0.93 2E-05 41.8 19.3 168 24-205 86-265 (316)
406 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 1.3 2.9E-05 43.9 20.3 40 174-213 308-347 (415)
407 KOG3630 Nuclear pore complex, 96.0 0.092 2E-06 56.5 12.2 146 67-234 100-261 (1405)
408 KOG1898 Splicing factor 3b, su 96.0 1.8 3.9E-05 46.9 21.3 70 22-91 581-665 (1205)
409 KOG4499 Ca2+-binding protein R 95.9 1 2.2E-05 40.0 16.4 51 175-226 213-263 (310)
410 KOG4441 Proteins containing BT 95.9 0.44 9.5E-06 50.0 17.0 211 2-239 302-534 (571)
411 TIGR03074 PQQ_membr_DH membran 95.9 3.4 7.4E-05 44.8 24.0 207 35-244 194-475 (764)
412 TIGR03118 PEPCTERM_chp_1 conse 95.8 1.6 3.5E-05 40.6 20.0 207 26-244 25-277 (336)
413 PF10168 Nup88: Nuclear pore c 95.8 3.5 7.6E-05 44.3 23.2 32 175-206 148-182 (717)
414 TIGR02604 Piru_Ver_Nterm putat 95.7 0.6 1.3E-05 46.3 16.5 154 175-355 15-202 (367)
415 KOG2280 Vacuolar assembly/sort 95.6 3.3 7E-05 43.4 20.9 55 45-104 64-118 (829)
416 PF12234 Rav1p_C: RAVE protein 95.5 0.43 9.3E-06 49.7 14.9 70 175-244 31-102 (631)
417 KOG2444 WD40 repeat protein [G 95.4 0.072 1.6E-06 46.9 7.5 73 35-108 70-143 (238)
418 PF10168 Nup88: Nuclear pore c 95.4 1.9 4.2E-05 46.3 19.5 74 24-97 85-179 (717)
419 PF02333 Phytase: Phytase; In 95.3 3.2 7E-05 40.6 23.3 211 78-332 67-299 (381)
420 KOG3630 Nuclear pore complex, 95.2 0.3 6.5E-06 52.9 12.7 144 175-355 102-262 (1405)
421 PHA03098 kelch-like protein; P 95.0 0.9 2E-05 47.7 16.2 184 34-244 294-509 (534)
422 PF14870 PSII_BNR: Photosynthe 95.0 3.3 7.1E-05 39.4 30.7 150 175-363 146-301 (302)
423 PRK13684 Ycf48-like protein; P 94.6 4.8 0.0001 39.2 29.6 153 175-365 174-330 (334)
424 COG5276 Uncharacterized conser 94.5 3.9 8.4E-05 37.8 25.0 132 3-145 108-245 (370)
425 PF12234 Rav1p_C: RAVE protein 94.5 0.8 1.7E-05 47.8 13.6 70 26-96 32-103 (631)
426 PRK13684 Ycf48-like protein; P 94.5 5.1 0.00011 39.0 18.8 65 175-241 216-283 (334)
427 TIGR02604 Piru_Ver_Nterm putat 94.4 1.5 3.4E-05 43.3 15.2 62 24-89 14-91 (367)
428 KOG1897 Damage-specific DNA bi 94.3 9.4 0.0002 41.4 31.2 119 175-325 489-613 (1096)
429 PF14781 BBS2_N: Ciliary BBSom 94.3 1.9 4.1E-05 34.9 12.3 114 27-144 2-128 (136)
430 PF15390 DUF4613: Domain of un 94.3 1.5 3.3E-05 44.4 14.2 158 175-367 21-187 (671)
431 TIGR03074 PQQ_membr_DH membran 94.2 10 0.00022 41.3 23.9 93 79-211 194-286 (764)
432 PHA02790 Kelch-like protein; P 94.2 3.3 7.1E-05 42.7 17.4 182 34-244 271-468 (480)
433 KOG2280 Vacuolar assembly/sort 94.0 1.5 3.1E-05 45.8 13.8 52 175-226 218-269 (829)
434 PHA03098 kelch-like protein; P 94.0 2.1 4.5E-05 45.0 15.9 148 34-207 342-515 (534)
435 KOG1916 Nuclear protein, conta 94.0 0.2 4.3E-06 52.8 7.7 154 194-380 152-337 (1283)
436 COG3823 Glutamine cyclotransfe 93.8 3.5 7.5E-05 36.1 13.6 196 14-234 34-247 (262)
437 PF13449 Phytase-like: Esteras 93.7 5.1 0.00011 38.9 16.9 70 175-244 148-247 (326)
438 KOG2247 WD40 repeat-containing 93.6 0.011 2.4E-07 57.5 -1.7 148 69-241 36-183 (615)
439 TIGR03118 PEPCTERM_chp_1 conse 93.5 6.5 0.00014 36.8 24.6 227 69-346 24-307 (336)
440 COG5167 VID27 Protein involved 93.4 1.4 3E-05 43.7 11.9 148 78-244 478-630 (776)
441 PF10313 DUF2415: Uncharacteri 93.3 0.42 9.2E-06 30.0 5.4 31 24-54 1-34 (43)
442 PF08728 CRT10: CRT10; InterP 93.0 4 8.7E-05 43.3 15.4 162 185-365 49-245 (717)
443 PF08728 CRT10: CRT10; InterP 92.9 5 0.00011 42.5 16.0 73 172-244 99-193 (717)
444 COG3823 Glutamine cyclotransfe 92.8 6.4 0.00014 34.6 13.7 49 192-244 108-156 (262)
445 PF14269 Arylsulfotran_2: Aryl 92.4 10 0.00023 36.1 23.9 72 174-245 144-219 (299)
446 COG4257 Vgb Streptogramin lyas 92.3 9 0.0002 35.2 20.5 154 68-244 62-216 (353)
447 smart00036 CNH Domain found in 92.2 11 0.00025 36.0 27.6 59 34-97 12-73 (302)
448 KOG2377 Uncharacterized conser 91.8 3 6.4E-05 41.0 11.7 143 176-354 25-171 (657)
449 KOG1896 mRNA cleavage and poly 91.8 9.5 0.00021 42.3 16.5 177 3-203 1006-1213(1366)
450 KOG1916 Nuclear protein, conta 91.7 0.058 1.3E-06 56.5 0.4 69 176-246 186-265 (1283)
451 COG5290 IkappaB kinase complex 91.7 4.5 9.7E-05 42.6 13.4 279 13-378 66-380 (1243)
452 KOG4460 Nuclear pore complex, 91.5 8.3 0.00018 38.7 14.5 74 126-200 55-130 (741)
453 TIGR03606 non_repeat_PQQ dehyd 91.4 14 0.0003 37.4 16.7 151 175-353 31-246 (454)
454 PF10313 DUF2415: Uncharacteri 91.4 0.94 2E-05 28.5 5.3 32 68-99 1-35 (43)
455 TIGR02276 beta_rpt_yvtn 40-res 91.3 1.3 2.7E-05 27.6 6.3 40 77-116 1-41 (42)
456 PF11635 Med16: Mediator compl 91.3 13 0.00029 40.6 17.8 68 174-241 260-345 (753)
457 PF07569 Hira: TUP1-like enhan 91.3 1 2.2E-05 40.8 7.9 71 298-373 16-101 (219)
458 PF14761 HPS3_N: Hermansky-Pud 90.5 12 0.00026 33.2 14.0 57 186-244 29-93 (215)
459 PHA02790 Kelch-like protein; P 90.0 7.1 0.00015 40.3 13.8 68 33-102 317-389 (480)
460 PF07569 Hira: TUP1-like enhan 89.8 3.1 6.8E-05 37.6 9.7 69 31-100 18-98 (219)
461 PLN00033 photosystem II stabil 89.7 23 0.00051 35.3 18.9 66 175-243 329-396 (398)
462 COG5167 VID27 Protein involved 89.5 4.1 8.8E-05 40.6 10.5 148 181-366 475-632 (776)
463 KOG2063 Vacuolar assembly/sort 89.0 32 0.0007 37.8 17.7 71 30-101 21-100 (877)
464 PF08801 Nucleoporin_N: Nup133 88.9 10 0.00023 38.3 14.0 30 175-204 191-220 (422)
465 COG3292 Predicted periplasmic 88.9 30 0.00065 35.4 18.5 66 175-242 377-443 (671)
466 KOG1900 Nuclear pore complex, 88.8 4.6 9.9E-05 45.1 11.5 69 175-244 180-270 (1311)
467 PF11715 Nup160: Nucleoporin N 88.7 2.5 5.5E-05 44.5 9.7 76 33-108 156-259 (547)
468 PF03088 Str_synth: Strictosid 88.7 4.6 0.0001 30.3 8.3 50 192-243 34-85 (89)
469 PF13449 Phytase-like: Esteras 87.8 28 0.00061 33.8 16.3 171 175-366 21-249 (326)
470 KOG1983 Tomosyn and related SN 87.6 56 0.0012 37.1 20.2 29 25-53 37-65 (993)
471 PF02333 Phytase: Phytase; In 87.3 31 0.00068 33.9 21.8 203 116-368 61-292 (381)
472 KOG1520 Predicted alkaloid syn 86.2 34 0.00074 33.3 14.6 55 188-244 192-248 (376)
473 PF14761 HPS3_N: Hermansky-Pud 86.0 25 0.00053 31.3 17.1 49 36-87 29-79 (215)
474 PF14269 Arylsulfotran_2: Aryl 86.0 25 0.00055 33.5 13.7 72 25-96 145-219 (299)
475 PF03022 MRJP: Major royal jel 85.6 33 0.00072 32.5 21.9 55 297-354 190-253 (287)
476 KOG2377 Uncharacterized conser 85.6 9.3 0.0002 37.7 10.3 68 29-98 28-97 (657)
477 COG1520 FOG: WD40-like repeat 85.3 41 0.00089 33.3 20.1 219 2-243 79-302 (370)
478 PF07250 Glyoxal_oxid_N: Glyox 85.2 18 0.0004 33.1 11.8 51 46-98 47-100 (243)
479 PF12657 TFIIIC_delta: Transcr 84.9 7.7 0.00017 33.6 9.0 35 338-372 87-129 (173)
480 PF05935 Arylsulfotrans: Aryls 84.8 51 0.0011 34.0 17.8 167 35-212 115-310 (477)
481 PF14781 BBS2_N: Ciliary BBSom 84.8 20 0.00043 29.2 13.8 116 74-211 5-133 (136)
482 PRK13613 lipoprotein LpqB; Pro 84.6 59 0.0013 34.5 22.7 130 217-375 455-589 (599)
483 KOG1900 Nuclear pore complex, 84.4 12 0.00026 42.0 11.7 145 192-367 96-273 (1311)
484 PF07676 PD40: WD40-like Beta 84.2 3.2 7E-05 25.3 4.7 26 297-322 13-38 (39)
485 PF12768 Rax2: Cortical protei 83.9 22 0.00048 33.4 12.0 93 2-96 17-122 (281)
486 PF10214 Rrn6: RNA polymerase 83.5 77 0.0017 35.0 20.2 241 57-367 29-277 (765)
487 KOG3616 Selective LIM binding 83.3 16 0.00034 38.5 11.3 76 24-105 15-90 (1636)
488 PF08801 Nucleoporin_N: Nup133 83.1 45 0.00097 33.7 15.1 30 338-367 191-220 (422)
489 PF12657 TFIIIC_delta: Transcr 83.1 7.9 0.00017 33.5 8.3 29 69-97 87-121 (173)
490 TIGR02276 beta_rpt_yvtn 40-res 83.0 6.8 0.00015 24.1 6.0 40 302-344 1-41 (42)
491 PF07676 PD40: WD40-like Beta 82.9 4.7 0.0001 24.6 5.0 31 333-363 5-38 (39)
492 KOG4659 Uncharacterized conser 82.7 95 0.0021 35.5 21.3 16 297-312 597-612 (1899)
493 PF10433 MMS1_N: Mono-function 82.6 65 0.0014 33.5 25.6 281 29-362 49-385 (504)
494 PF12768 Rax2: Cortical protei 82.5 42 0.00091 31.6 13.3 55 45-101 16-76 (281)
495 KOG2247 WD40 repeat-containing 82.1 0.31 6.7E-06 47.9 -0.9 145 175-360 36-182 (615)
496 COG4257 Vgb Streptogramin lyas 81.5 45 0.00097 30.9 22.5 193 24-244 62-260 (353)
497 TIGR03547 muta_rot_YjhT mutatr 80.8 58 0.0013 31.8 14.6 179 2-238 86-332 (346)
498 COG4590 ABC-type uncharacteriz 80.7 8.6 0.00019 37.9 8.0 173 10-207 209-390 (733)
499 PLN00033 photosystem II stabil 80.5 66 0.0014 32.2 32.1 150 176-363 241-396 (398)
500 PF03088 Str_synth: Strictosid 80.5 19 0.0004 27.1 8.2 40 44-86 36-75 (89)
No 1
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-59 Score=408.61 Aligned_cols=401 Identities=40% Similarity=0.723 Sum_probs=348.6
Q ss_pred CCccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 1 MNAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 1 mnl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
||+.|.||+..++|+.+..........|+.||+.|.+||+|+.||.|.|||+.|....+.+.+| ..+|++++||++|+
T Consensus 1 Mnl~L~d~f~~~~PEel~~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH--~~pi~sl~WS~dgr 78 (405)
T KOG1273|consen 1 MNLELLDPFGVEYPEELTHTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH--VRPITSLCWSRDGR 78 (405)
T ss_pred CcccccccccccChHhhceeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc--ccceeEEEecCCCC
Confidence 9999999999999999988776666899999999999999999999999999999998889876 99999999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
+|+|++.|..|.+||+..|.+++.+++..++..+.|+|... +.++++-.+....+.++..+....++.......+.
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~--n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~-- 154 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR--NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNS-- 154 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccC--CeEEEEEecCCcEEEEecCCceeeccCCCcccccc--
Confidence 99999999999999999999999999999999999999754 47888888888999999887777666544332221
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
...+..|.+.|++|++|+..|.+.+||..+.+++..+.......|.+|.|+..|++|++.+.|+.|
T Consensus 155 --------------sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 155 --------------SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred --------------ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceE
Confidence 344457999999999999999999999999999888875556889999999999999999999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
|.|++..- ........+.....+++.|++.+|++++||.+|.|+++|+.. .+.+|
T Consensus 221 R~ye~~di-----------------------~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~--aHaLY 275 (405)
T KOG1273|consen 221 RTYEISDI-----------------------DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR--AHALY 275 (405)
T ss_pred EEEehhhh-----------------------cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecccc--ceeEE
Confidence 99992210 000012234455678899999999999999999999999864 68999
Q ss_pred EEecC-CceeEEEecCC-CceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceeecCCcceeceeceeeecccccCCcc
Q 008844 321 IWDRA-GYLVKILEGPK-EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLNT 398 (551)
Q Consensus 321 iwd~~-~~~~~~l~~h~-~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~spd~~~l~~~~~~~e~e~e~~~~~ 398 (551)
||... |.+++.|.|.. ....++.|+|-.+.|++. ..|.|+||.....++|++|+|||+++++|++|.|+|+|||+++
T Consensus 276 IWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enwsafAPdFqeleeNieY~EkEdeFDi~D 354 (405)
T KOG1273|consen 276 IWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENWSAFAPDFQELEENIEYEEKEDEFDIED 354 (405)
T ss_pred EEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccchhhcCchHHHHHhhhhhccccccCCccc
Confidence 99999 99999999988 678999999999999998 5899999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCccceeeeccCCC-CCCCCcCccceeeecCCCCCCCCCcc
Q 008844 399 ETEKVKESNVNEDEEVDIVAVDKDA-FSDSDMSQEELCFLPAIPCPDVPERQ 449 (551)
Q Consensus 399 ~~~~~~~~~~~ed~~~d~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~ 449 (551)
++++....+.+|+..+|++++++.. +.++++ ++.+++|+.+..+.+++.
T Consensus 355 E~~~e~~~~~aEe~~idv~~v~p~d~~~ss~~--e~~~~iP~~~~~~~~~~~ 404 (405)
T KOG1273|consen 355 EDEQEQELEQAEEIAIDVVTVEPYDVRGSSDE--EERFYIPTDLTREIKMQS 404 (405)
T ss_pred ccccchhhhhhhhhheeeEeecchhcccCcch--hcceecCCCccccccccC
Confidence 8887777677799999999999987 544433 345999999988877653
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-46 Score=335.77 Aligned_cols=302 Identities=19% Similarity=0.314 Sum_probs=262.8
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
|.++|.|++|+|+|..||+|+.|.++|+||+.+.....+..+| ...|.|++|+|||+.|++|+.||+|++||..+|++
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH--~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH--KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC--ccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 7899999999999999999999999999999999999888776 99999999999999999999999999999999877
Q ss_pred EE-EEEcCC-CeeEEEEecCCC--CCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 102 IT-RIVLQQ-TPLQARLHPGSS--TPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 102 ~~-~~~~~~-~~~~~~~~p~~~--~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
+. .+.+|. .+.+++|.|... ...++++++.||.++|||+..+...... .+|...|+
T Consensus 192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l--------------------sgHT~~VT 251 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL--------------------SGHTASVT 251 (480)
T ss_pred ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------ccCccceE
Confidence 64 455554 588999998643 2347899999999999999998876543 34555999
Q ss_pred EEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEe-----------eCCC-----------------
Q 008844 178 AACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFS-----------RNGQ----------------- 229 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s-----------~~g~----------------- 229 (551)
|+.|-.+| +|++|+.|++|++|+...|.+...+. +|...|+.|+++ |.++
T Consensus 252 CvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 252 CVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred EEEEcCCc-eEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 99997655 89999999999999999999988887 899999999877 2233
Q ss_pred --------EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 230 --------YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 230 --------~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
.|++|+.|.++.+|+... ..+++....+|+..|+ .+.||
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~----------------------------~kkpi~rmtgHq~lVn-----~V~fS 376 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFK----------------------------SKKPITRMTGHQALVN-----HVSFS 376 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccc----------------------------cccchhhhhchhhhee-----eEEEC
Confidence 499999999999998221 2456778889999998 89999
Q ss_pred CCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce--------
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS-------- 372 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~-------- 372 (551)
||++|||+++. |..|++|+-. |+.+..|.||-++|..++|+.|.++|++|+.|.++++|++.+.+...
T Consensus 377 Pd~r~IASaSF---DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 377 PDGRYIASASF---DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred CCccEEEEeec---ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce
Confidence 99999999999 9999999999 99999999999999999999999999999999999999999865332
Q ss_pred ----eecCCcceece
Q 008844 373 ----AFAPDFKELEE 383 (551)
Q Consensus 373 ----~~spd~~~l~~ 383 (551)
.++|||+.++.
T Consensus 454 Vf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVAS 468 (480)
T ss_pred EEEEEecCCCceeec
Confidence 57777776653
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=327.85 Aligned_cols=281 Identities=19% Similarity=0.291 Sum_probs=259.0
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC--CCEEEEEeCCCCEEEEEcCC
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY--GHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~--g~~l~s~s~dg~i~vwd~~~ 98 (551)
....+|..+.||+++..||||+.+|.++||...+...+.+|.+| ...|.++.|+|. +..|+||+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH--~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH--TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc--ccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 35689999999999999999999999999999999999999877 999999999996 66899999999999999998
Q ss_pred CeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 99 GEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 99 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
..++..+.+|. .+..++|+|.|. ++.+++.|.+-++||+.++..... ..+|...|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL~--------------------QEGHs~~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGK---FLGTASFDSTWRLWDLETKSELLL--------------------QEGHSKGVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCc---eeeecccccchhhcccccchhhHh--------------------hcccccccc
Confidence 89999998876 478899999976 899999999999999999876543 234555999
Q ss_pred EEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhh
Q 008844 178 AACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
+++|.++|.++++|+.|..-+|||++++.++..+. +|..+|.++.|+|+|..||||+.|++++|||+.+
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~---------- 376 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM---------- 376 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecc----------
Confidence 99999999999999999999999999999999987 7999999999999999999999999999999332
Q ss_pred hhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-CceeEEEecC
Q 008844 258 DIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGP 335 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h 335 (551)
..++.++..|.+.|+ .++|+| .|.+|+++++ |++++||... +.+++.|.||
T Consensus 377 -------------------r~~ly~ipAH~nlVS-----~Vk~~p~~g~fL~Tasy---D~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 377 -------------------RSELYTIPAHSNLVS-----QVKYSPQEGYFLVTASY---DNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred -------------------cccceecccccchhh-----heEecccCCeEEEEccc---CcceeeecCCCcccchhhcCC
Confidence 455888999999998 889998 8999999999 9999999999 9999999999
Q ss_pred CCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 336 KEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 336 ~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.+.|.++..+|++.+|+|++.|.++++|.
T Consensus 430 e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-43 Score=315.95 Aligned_cols=308 Identities=19% Similarity=0.317 Sum_probs=254.1
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee-eEeecccccccEEEEEecC---
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIA-KELRDKECVAAITSVCWSK--- 77 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~-~~~~~~~h~~~V~~l~~s~--- 77 (551)
.+++||+.+.....+... |..-|.|++|+|||+.||+|+.||+|++||..+|+.+ ..|.+| ...|++|+|.|
T Consensus 138 TvR~WD~~TeTp~~t~Kg--H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH--~K~It~Lawep~hl 213 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKG--HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGH--KKWITALAWEPLHL 213 (480)
T ss_pred eEEeeccCCCCcceeecC--CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCc--ccceeEEeeccccc
Confidence 478999998877666666 8899999999999999999999999999999988754 566655 99999999976
Q ss_pred --CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCC
Q 008844 78 --YGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 78 --~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
..++|++++.||.|+|||+..+.++..+.+|. ++.+++|--.+ ++.+++.|++|++|+...|...........
T Consensus 214 ~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g----liySgS~DrtIkvw~a~dG~~~r~lkGHah 289 (480)
T KOG0271|consen 214 VPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG----LIYSGSQDRTIKVWRALDGKLCRELKGHAH 289 (480)
T ss_pred CCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc----eEEecCCCceEEEEEccchhHHHhhcccch
Confidence 56899999999999999999999999999886 47788887544 899999999999999988764332221111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeC-------------------------CCEEEEEecCceEEEEECCCCc-EE
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKY-------------------------GDLVYVGNSKGEILVIDHKSNQ-IR 208 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-------------------------g~~l~~g~~dg~i~i~d~~~~~-~~ 208 (551)
-.+.++.. ..+....-+|.|. +..+++|+.|+++.+|+....+ ++
T Consensus 290 wvN~lals---------Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi 360 (480)
T KOG0271|consen 290 WVNHLALS---------TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI 360 (480)
T ss_pred heeeeecc---------chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch
Confidence 11111000 0001111122222 3459999999999999976544 55
Q ss_pred EeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc
Q 008844 209 ALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD 288 (551)
Q Consensus 209 ~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (551)
..+. +|...|+.+.|+||++++|+++.|..|++|+ ..+++.+..|++|-.
T Consensus 361 ~rmt-gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~-----------------------------g~tGk~lasfRGHv~ 410 (480)
T KOG0271|consen 361 TRMT-GHQALVNHVSFSPDGRYIASASFDKSVKLWD-----------------------------GRTGKFLASFRGHVA 410 (480)
T ss_pred hhhh-chhhheeeEEECCCccEEEEeecccceeeee-----------------------------CCCcchhhhhhhccc
Confidence 5554 8999999999999999999999999999999 445778999999999
Q ss_pred ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 289 SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 289 ~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.|. .++||.|.++|++|+. |.+|+||++. .++..-|.||...|.++.|+|||..+++++.|..+++|.
T Consensus 411 ~VY-----qvawsaDsRLlVS~Sk---DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 411 AVY-----QVAWSADSRLLVSGSK---DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeE-----EEEeccCccEEEEcCC---CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999 8899999999999999 9999999999 889999999999999999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-39 Score=280.88 Aligned_cols=281 Identities=17% Similarity=0.223 Sum_probs=244.6
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC--
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG-- 99 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~-- 99 (551)
|.+.|.++.|++|.++|++++.||.+.|||.-|...++.+... ...|..++|+|.|++++.|+.|+...||++.+.
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC--ceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 8899999999999999999999999999999998888888877 899999999999999999999999999999754
Q ss_pred ----eEEEEEEcCCCe-eEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 100 ----EKITRIVLQQTP-LQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 100 ----~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
...+.+.+|..- .++.|.+++ .+++++.|.+..+||+.+++..... .+|..
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~----~ilT~SGD~TCalWDie~g~~~~~f--------------------~GH~g 187 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDN----HILTGSGDMTCALWDIETGQQTQVF--------------------HGHTG 187 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCC----ceEecCCCceEEEEEcccceEEEEe--------------------cCCcc
Confidence 344556666664 455566643 6999999999999999999987553 34555
Q ss_pred CceEEEEee-CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccc
Q 008844 175 TPTAACFNK-YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 175 ~i~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
.|.++.++| +++.+++|+.|+..++||++.+.+++.+. +|...|+++.|.|+|.-+++|+.|++.|+||++.
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa------ 260 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRA------ 260 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecC------
Confidence 899999999 89999999999999999999999999998 9999999999999999999999999999999332
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
...+..+. +. .....+++++||..|++|++|.. |..+.+||.- ++.+..|
T Consensus 261 -----------------------D~~~a~ys-~~--~~~~gitSv~FS~SGRlLfagy~---d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 261 -----------------------DQELAVYS-HD--SIICGITSVAFSKSGRLLFAGYD---DFTCNVWDTLKGERVGVL 311 (343)
T ss_pred -----------------------CcEEeeec-cC--cccCCceeEEEcccccEEEeeec---CCceeEeeccccceEEEe
Confidence 22233333 11 12233459999999999999988 9999999999 9999999
Q ss_pred ecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.||...|.+|..+|||..|+|+|.|..++||.
T Consensus 312 ~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999994
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=284.02 Aligned_cols=291 Identities=24% Similarity=0.379 Sum_probs=250.7
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEecc-CCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFE-TRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~-~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 98 (551)
..|.+.|..+.|+|+|.+||+|+.|..|.+|++. ..+....+.+ |.+.|..+.|.++++.|++++.|.+|+.||+++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg--HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG--HSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc--ccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 3477999999999999999999999999999964 3444556655 499999999999999999999999999999999
Q ss_pred CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 99 GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
|++++.++.|.......- |...++.++.+++.|+++++||++........ ..++.+++
T Consensus 122 G~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~---------------------~~kyqltA 179 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF---------------------ENKYQLTA 179 (338)
T ss_pred ceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhcc---------------------ccceeEEE
Confidence 999999999988776555 77777889999999999999999977654332 12348999
Q ss_pred EEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 179 ACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
++|...+..+++|+-|+.|++||++......++. +|...|+.|..+++|.++++.+.|.++++|| ..|.
T Consensus 180 v~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd-~rp~--------- 248 (338)
T KOG0265|consen 180 VGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWD-VRPF--------- 248 (338)
T ss_pred EEecccccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEE-eccc---------
Confidence 9999999999999999999999999999988887 9999999999999999999999999999999 3332
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKE 337 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~ 337 (551)
....+|+..+.++......... .++|||+++++.+|+. |..+++||.. ...+..+.||.+
T Consensus 249 ---------------~p~~R~v~if~g~~hnfeknlL-~cswsp~~~~i~ags~---dr~vyvwd~~~r~~lyklpGh~g 309 (338)
T KOG0265|consen 249 ---------------APSQRCVKIFQGHIHNFEKNLL-KCSWSPNGTKITAGSA---DRFVYVWDTTSRRILYKLPGHYG 309 (338)
T ss_pred ---------------CCCCceEEEeecchhhhhhhcc-eeeccCCCCccccccc---cceEEEeecccccEEEEcCCcce
Confidence 2235567777665543322111 7899999999999999 9999999999 789999999999
Q ss_pred ceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 338 ALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.|+.++|+|..++|.+++.|.+|++=.
T Consensus 310 svn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999999999999998743
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=263.94 Aligned_cols=279 Identities=14% Similarity=0.194 Sum_probs=235.8
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce--eeEeecccccccEEEEEecCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI--AKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~--~~~~~~~~h~~~V~~l~~s~~g 79 (551)
.+++|...+|....++.. ..+.|+.+.+.|++++||+|+. ..||+||+.++.. +.++.+| ...|+++.|..+|
T Consensus 21 TIRfWqa~tG~C~rTiqh--~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h--~kNVtaVgF~~dg 95 (311)
T KOG0315|consen 21 TIRFWQALTGICSRTIQH--PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGH--TKNVTAVGFQCDG 95 (311)
T ss_pred eeeeeehhcCeEEEEEec--CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEecc--CCceEEEEEeecC
Confidence 478999999988777764 4588999999999999999875 6899999998764 5666655 9999999999999
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 80 HRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
+.+++|+.||+++|||++...+.+.+....
T Consensus 96 rWMyTgseDgt~kIWdlR~~~~qR~~~~~s-------------------------------------------------- 125 (311)
T KOG0315|consen 96 RWMYTGSEDGTVKIWDLRSLSCQRNYQHNS-------------------------------------------------- 125 (311)
T ss_pred eEEEecCCCceEEEEeccCcccchhccCCC--------------------------------------------------
Confidence 999999999999999998855544444332
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCe
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRT 239 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~ 239 (551)
+|+++..+|+...|++|..+|.|++||+....+...+.......|.++...|+|.+|+.+..-|.
T Consensus 126 ---------------pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 126 ---------------PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ---------------CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 78888888888899999999999999999987766654466789999999999999999999999
Q ss_pred EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceE
Q 008844 240 IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKI 319 (551)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I 319 (551)
.++|++.... ......++..++.|+..+. .+.+|||++|||+++. |.++
T Consensus 191 cyvW~l~~~~-----------------------~~s~l~P~~k~~ah~~~il-----~C~lSPd~k~lat~ss---dktv 239 (311)
T KOG0315|consen 191 CYVWRLLNHQ-----------------------TASELEPVHKFQAHNGHIL-----RCLLSPDVKYLATCSS---DKTV 239 (311)
T ss_pred EEEEEccCCC-----------------------ccccceEhhheecccceEE-----EEEECCCCcEEEeecC---CceE
Confidence 9999943311 0111344566778888887 8899999999999999 9999
Q ss_pred EEEecC-C-ceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceeecCCccee
Q 008844 320 YIWDRA-G-YLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFAPDFKEL 381 (551)
Q Consensus 320 ~iwd~~-~-~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~spd~~~l 381 (551)
+||+++ . ++-..+.+|...+.+.+||.++.||++++.|+.+++|++..++....+.+..+..
T Consensus 240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 999999 3 6777889999999999999999999999999999999999998877777766543
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=289.92 Aligned_cols=256 Identities=18% Similarity=0.270 Sum_probs=232.6
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCC--CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRR--GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~d--g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
+.||+..+.....++.. |...|.++.|+|. +..||||+.||+|++|++++...+..+.+| ...|..++|+|+|+
T Consensus 199 ~kvW~~~~~~~~~~l~g--H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH--~~RVs~VafHPsG~ 274 (459)
T KOG0272|consen 199 VKVWSVPQCNLLQTLRG--HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGH--LARVSRVAFHPSGK 274 (459)
T ss_pred eeEeecCCcceeEEEec--cccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcc--hhhheeeeecCCCc
Confidence 57899888866666655 9999999999997 679999999999999999998999999877 89999999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
+|+|+|.|.+-++||+.++..+....+|. .+++++|+|+|+ ++++++.|..-+|||++++....+...
T Consensus 275 ~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS---L~~tGGlD~~~RvWDlRtgr~im~L~g-------- 343 (459)
T KOG0272|consen 275 FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS---LAATGGLDSLGRVWDLRTGRCIMFLAG-------- 343 (459)
T ss_pred eeeecccccchhhcccccchhhHhhcccccccceeEecCCCc---eeeccCccchhheeecccCcEEEEecc--------
Confidence 99999999999999999999888888876 588999999976 899999999999999999998765432
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee-CCCEEEEeeCCC
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR-NGQYLLTNSNDR 238 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg 238 (551)
|...|.+++|+|+|..|++|+.|++++|||++....+.+++ .|...|+.+.|+| .|.+|+|++.|+
T Consensus 344 ------------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 344 ------------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred ------------cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCc
Confidence 44499999999999999999999999999999999988887 9999999999998 788999999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
+++||. ..+..++..+.+|.+.|. ++.+++++.+|++++. |.+
T Consensus 411 t~kiWs-----------------------------~~~~~~~ksLaGHe~kV~-----s~Dis~d~~~i~t~s~---DRT 453 (459)
T KOG0272|consen 411 TVKIWS-----------------------------TRTWSPLKSLAGHEGKVI-----SLDISPDSQAIATSSF---DRT 453 (459)
T ss_pred ceeeec-----------------------------CCCcccchhhcCCccceE-----EEEeccCCceEEEecc---Cce
Confidence 999998 334678899999999998 8999999999999999 999
Q ss_pred EEEEe
Q 008844 319 IYIWD 323 (551)
Q Consensus 319 I~iwd 323 (551)
+++|.
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99995
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-36 Score=279.41 Aligned_cols=277 Identities=21% Similarity=0.334 Sum_probs=247.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
..|++|+|+.+|++||+|+.||.++||+.. |.++.++..| .++|.+|.|+..|+||++++.|+++.+||..+|....
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~H--kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQH--KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhcc--CCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 579999999999999999999999999976 7777788655 9999999999999999999999999999999999999
Q ss_pred EEEcCCCe-eEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q 008844 104 RIVLQQTP-LQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN 182 (551)
Q Consensus 104 ~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 182 (551)
.+.++..+ ..+.|..+. -+++++.++.++++-+....+.... .+|...|.++.|+
T Consensus 313 ~f~~~s~~~lDVdW~~~~----~F~ts~td~~i~V~kv~~~~P~~t~--------------------~GH~g~V~alk~n 368 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND----EFATSSTDGCIHVCKVGEDRPVKTF--------------------IGHHGEVNALKWN 368 (524)
T ss_pred eeeeccCCccceEEecCc----eEeecCCCceEEEEEecCCCcceee--------------------ecccCceEEEEEC
Confidence 99999877 678887654 6999999999999988776654332 2255599999999
Q ss_pred eCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC---------CEEEEeeCCCeEEEEeCcCCccccc
Q 008844 183 KYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG---------QYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 183 ~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g---------~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
|.|.+|++++.|++++||..........+. .|...|..+.|+|.| ..|++++.|++|++||+
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv-------- 439 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV-------- 439 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc--------
Confidence 999999999999999999998888877776 899999999999864 47999999999999993
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
..+.++..+..|+.+|. +++|||+|+|+|+|+. ||.|.||++. +++++.+
T Consensus 440 ---------------------~~gv~i~~f~kH~~pVy-----svafS~~g~ylAsGs~---dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 440 ---------------------ESGVPIHTLMKHQEPVY-----SVAFSPNGRYLASGSL---DGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred ---------------------cCCceeEeeccCCCceE-----EEEecCCCcEEEecCC---CCeeEeccccchheeEee
Confidence 33678899999999999 9999999999999999 9999999999 9999998
Q ss_pred ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
.+ .+.|..|+|+.+|..|..+-.||.+++-|+.
T Consensus 491 ~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 QG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 86 5669999999999999999999999998864
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1e-37 Score=288.42 Aligned_cols=288 Identities=19% Similarity=0.333 Sum_probs=251.8
Q ss_pred cccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccC-CceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC
Q 008844 21 LEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFET-RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 21 ~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~-~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 98 (551)
.|...|+++.|.| .+.+|++|+.|+.|+||++-. +++++++.+| ..+|..++|+++|..++|++.|+.|++||+++
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH--~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH--RKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc--hhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 3778999999999 899999999999999999876 8899999876 99999999999999999999999999999999
Q ss_pred CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 99 GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
|+++..+.....+.++.|+|++ ++.++++..++.|+.||+++++.....-. |-..|..
T Consensus 290 G~~~~~f~~~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~--------------------hLg~i~~ 347 (503)
T KOG0282|consen 290 GQVLSRFHLDKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDR--------------------HLGAILD 347 (503)
T ss_pred ceEEEEEecCCCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHh--------------------hhhheee
Confidence 9999999999999999999987 67999999999999999999985433221 2228899
Q ss_pred EEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 179 ACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
+.|-++|+.+++++.+++++||+.+..-.+......+.....++..+|++.+++.-+.|+.|.+|.+..+..
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-------- 419 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-------- 419 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc--------
Confidence 999999999999999999999999998877666545566778899999999999999999999998332210
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKE 337 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~ 337 (551)
......+.+|...-..+ .|.|||||++|++|+. +|.+++||.. .+++..+++|..
T Consensus 420 ------------------~nkkK~feGh~vaGys~---~v~fSpDG~~l~SGds---dG~v~~wdwkt~kl~~~lkah~~ 475 (503)
T KOG0282|consen 420 ------------------LNKKKRFEGHSVAGYSC---QVDFSPDGRTLCSGDS---DGKVNFWDWKTTKLVSKLKAHDQ 475 (503)
T ss_pred ------------------cCHhhhhcceeccCcee---eEEEcCCCCeEEeecC---CccEEEeechhhhhhhccccCCc
Confidence 12234556665544443 7899999999999999 9999999999 999999999999
Q ss_pred ceEEEEEecCCC-eEEEEcCCCcEEEEe
Q 008844 338 ALIDLAWHPVHP-IIVSVSLTGWVYIWA 364 (551)
Q Consensus 338 ~v~~l~~sp~~~-~l~s~s~dg~i~iW~ 364 (551)
++..+.|||..+ .+|+|+.||.|++|+
T Consensus 476 ~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999876 899999999999996
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=286.20 Aligned_cols=382 Identities=20% Similarity=0.280 Sum_probs=285.2
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK- 98 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~- 98 (551)
..|...|++|.|+.|.++|++|+.|-+++||.+...+-.......+|...|.++-|..+...|++.+.||.+.+|....
T Consensus 142 ~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~ 221 (893)
T KOG0291|consen 142 LGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLR 221 (893)
T ss_pred cCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCC
Confidence 3466889999999999999999999999999998776655555556699999999999999999999999999997650
Q ss_pred ----------------------CeE---------EEEEEcC---CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 99 ----------------------GEK---------ITRIVLQ---QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 99 ----------------------~~~---------~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
++. ....-+. ..+.++.||+.. .+++++-.+|...+|.+..-.
T Consensus 222 P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t---~~lvvgFssG~f~LyelP~f~ 298 (893)
T KOG0291|consen 222 PPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT---NLLVVGFSSGEFGLYELPDFN 298 (893)
T ss_pred CcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc---eEEEEEecCCeeEEEecCCce
Confidence 111 1111112 446777888763 367777777777788776544
Q ss_pred eee---------eccccCCCCCCCCCC--------------CCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEE
Q 008844 145 TSI---------LPIAVPDVANGIAPS--------------SRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVID 201 (551)
Q Consensus 145 ~~~---------~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d 201 (551)
... ..+.....+.-++.. .......++|-..+++++++|||.+|++|+.||.|+|||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 221 111111111111111 112334566777999999999999999999999999999
Q ss_pred CCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee
Q 008844 202 HKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA 281 (551)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (551)
..++-+..++. .|...|+.+.|+..|+.|++.+.||+||.||+ +..+
T Consensus 379 ~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAwDl--------------------------------kRYr 425 (893)
T KOG0291|consen 379 TQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL--------------------------------KRYR 425 (893)
T ss_pred ccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEeeee--------------------------------cccc
Confidence 99999999997 89999999999999999999999999999992 2233
Q ss_pred eecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcE
Q 008844 282 LFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWV 360 (551)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i 360 (551)
.++.+..+ ...++.+++..|.|..+++|+.+ .-.|+||+++ |+++..|.||.++|.+++|+|.+..||++|+|.+|
T Consensus 426 NfRTft~P-~p~QfscvavD~sGelV~AG~~d--~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 426 NFRTFTSP-EPIQFSCVAVDPSGELVCAGAQD--SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred eeeeecCC-CceeeeEEEEcCCCCEEEeeccc--eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence 34444333 34567799999999999999984 3569999999 99999999999999999999999999999999999
Q ss_pred EEEecCCCC------------cceeecCCcceeceeceeeecccc-cCCcchhhh---hhccccC-CCccceeeeccCCC
Q 008844 361 YIWAKDYTE------------NWSAFAPDFKELEENEEYVEREDE-FDLNTETEK---VKESNVN-EDEEVDIVAVDKDA 423 (551)
Q Consensus 361 ~iW~~~~~~------------~~~~~spd~~~l~~~~~~~e~e~e-~~~~~~~~~---~~~~~~~-ed~~~d~~~~~~~~ 423 (551)
++|++-... .-.+|.|||++|+-.. ++.+-. |+.....+. .-..++. .....|..|.+..+
T Consensus 503 RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT--ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT--LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE--ecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 999986541 1128999999987432 222211 222211111 0112222 56677888887665
Q ss_pred ----CCCCCcCccceeeecCCCC
Q 008844 424 ----FSDSDMSQEELCFLPAIPC 442 (551)
Q Consensus 424 ----~~~~~~~~~~~~~~p~~~~ 442 (551)
|.+.+++.|+.++|.+..+
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~s 603 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGES 603 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCc
Confidence 8899999999999887654
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-37 Score=300.94 Aligned_cols=242 Identities=21% Similarity=0.336 Sum_probs=219.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-------------------------------eeeEeecccccccEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG-------------------------------IAKELRDKECVAAITS 72 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~-------------------------------~~~~~~~~~h~~~V~~ 72 (551)
..++|+.|++|+.+||.|..|..|++|.+...+ ..+++. +|.++|..
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~--GH~GPVyg 456 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY--GHSGPVYG 456 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee--cCCCceee
Confidence 679999999999999999999999999987311 122343 45999999
Q ss_pred EEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeecccc
Q 008844 73 VCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAV 152 (551)
Q Consensus 73 l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 152 (551)
+.|+|+.++|++++.|++|++|.+.+..++-.+++|..
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~------------------------------------------ 494 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA------------------------------------------ 494 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCc------------------------------------------
Confidence 99999999999999999999999999888877776543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEE
Q 008844 153 PDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLL 232 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 232 (551)
+|..+.|+|.|.+||+++.|++.++|......+.+.+. +|.+.|.|+.|+|+..|++
T Consensus 495 ----------------------PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~cv~FHPNs~Y~a 551 (707)
T KOG0263|consen 495 ----------------------PVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVDCVSFHPNSNYVA 551 (707)
T ss_pred ----------------------ceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-ccccccceEEECCcccccc
Confidence 78889999999999999999999999999988888886 8999999999999999999
Q ss_pred EeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeec
Q 008844 233 TNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSA 312 (551)
Q Consensus 233 t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~ 312 (551)
+||.|.+||+||+ ..+..++.|.+|.++|. +++|||+|+||++|+.
T Consensus 552 TGSsD~tVRlWDv-----------------------------~~G~~VRiF~GH~~~V~-----al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 552 TGSSDRTVRLWDV-----------------------------STGNSVRIFTGHKGPVT-----ALAFSPCGRYLASGDE 597 (707)
T ss_pred cCCCCceEEEEEc-----------------------------CCCcEEEEecCCCCceE-----EEEEcCCCceEeeccc
Confidence 9999999999993 33677999999999998 9999999999999999
Q ss_pred cCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 313 SKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 313 ~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+|.|.|||+. |.++..+.+|++.|.+|.|+.+|..||++|.|++|++||+....
T Consensus 598 ---d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 598 ---DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ---CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999 99999999999999999999999999999999999999987643
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-35 Score=253.26 Aligned_cols=281 Identities=17% Similarity=0.264 Sum_probs=238.2
Q ss_pred ccceEEEEEEcCC-CCEEEEEeCCCeEEEEecc-----CCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 22 EHGVMKCIAFNRR-GTLLAAGCSDGSCVIWDFE-----TRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 22 h~~~V~~l~fs~d-g~~latg~~dg~I~iwd~~-----~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
|.+.|+.++..+. ...|++++.|.+|.+|++. .|..++.+.+| ...|..+..+++|++.++++.|+++++||
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH--sH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH--SHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeecc--ceEecceEEccCCceEEeccccceEEEEE
Confidence 8899999999887 5689999999999999875 46678888876 88999999999999999999999999999
Q ss_pred cCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
+.+|+..+.|.+|. .+.+++|+|+.. .+++++.|.+|.+|++.......+.-.. +..
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~dn~---qivSGSrDkTiklwnt~g~ck~t~~~~~-------------------~~~ 149 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTDNR---QIVSGSRDKTIKLWNTLGVCKYTIHEDS-------------------HRE 149 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCCCc---eeecCCCcceeeeeeecccEEEEEecCC-------------------CcC
Confidence 99999999999886 588999999865 7999999999999999877654432111 022
Q ss_pred CceEEEEeeC--CCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcccc
Q 008844 175 TPTAACFNKY--GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 175 ~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
-|+|++|+|+ ..+|++++.|++|++||+++.+....+. +|.+.++.+++||||.++++|+.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL------- 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDL------- 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEc-------
Confidence 7999999999 6899999999999999999999988876 89999999999999999999999999999992
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEE
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKI 331 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~ 331 (551)
..++++..+. +...|. +++|+|+.-+|+.+.. ..|+|||+. +.++..
T Consensus 222 ----------------------~~~k~lysl~-a~~~v~-----sl~fspnrywL~~at~----~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 222 ----------------------NEGKNLYSLE-AFDIVN-----SLCFSPNRYWLCAATA----TSIKIWDLESKAVVEE 269 (315)
T ss_pred ----------------------cCCceeEecc-CCCeEe-----eEEecCCceeEeeccC----CceEEEeccchhhhhh
Confidence 2245555443 445565 9999999888888875 569999999 776665
Q ss_pred Eec----C-----CCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 332 LEG----P-----KEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 332 l~~----h-----~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
|.. . .....+++|+++|..|+++-.|+.|++|.+.
T Consensus 270 l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 LKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 542 2 2236789999999999999999999999875
No 14
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-36 Score=272.95 Aligned_cols=284 Identities=21% Similarity=0.363 Sum_probs=240.1
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG---IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~---~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 98 (551)
|...|.-+.||++|+|||+++.|.+..||.+.... +.+++.+| ..+|..+.||||.++|++|+.+..+++||+.+
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh--~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH--SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc--cCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 78999999999999999999999999999886543 46667665 99999999999999999999999999999999
Q ss_pred CeEEEEEEcC--CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 99 GEKITRIVLQ--QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 99 ~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
|.+...+... ..+.+++|.|++. .+++++.++++..||+.......+.-. ....|
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~~~~W~gv--------------------r~~~v 357 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNILGNWEGV--------------------RDPKV 357 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcchhhccccc--------------------cccee
Confidence 9988887665 5688999999976 599999999999999987663322110 01178
Q ss_pred eEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhh
Q 008844 177 TAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEAL 256 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (551)
.++++++||+++++.+.|..|.+|+..+...+..+ ....+|+++++|.+++++++.-.+..|++||+.
T Consensus 358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LWDl~---------- 425 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLWDLE---------- 425 (519)
T ss_pred EEEEEcCCCcEEEEEecccceeeechhhhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEeecc----------
Confidence 99999999999999999999999999887776555 567889999999999999999999999999922
Q ss_pred hhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-CceeEEEec
Q 008844 257 VDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG 334 (551)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~ 334 (551)
....+..+.+|...-.-+ .-||.. +..+|++|+. |+.||||+.. |+++..|.|
T Consensus 426 -------------------e~~lv~kY~Ghkq~~fiI---rSCFgg~~~~fiaSGSE---D~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 426 -------------------ENKLVRKYFGHKQGHFII---RSCFGGGNDKFIASGSE---DSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred -------------------hhhHHHHhhcccccceEE---EeccCCCCcceEEecCC---CceEEEEEccCCceeEeecC
Confidence 133445555655443222 557765 5589999999 9999999999 999999999
Q ss_pred CCCceEEEEEecCCC-eEEEEcCCCcEEEEecCC
Q 008844 335 PKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 335 h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~ 367 (551)
|...|++++|+|..+ ++|++|.||+|+||.+..
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999887 899999999999999864
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-34 Score=268.57 Aligned_cols=316 Identities=23% Similarity=0.288 Sum_probs=240.2
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEee-cccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELR-DKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~-~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
|+.-|.|+.|+|||.++|+++.||.|.|||-.+++.+..+. ...|.+.|.+|+|+||+..|+|++.|.+++|||+.+++
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 77889999999999999999999999999999999999998 34579999999999999999999999999999999999
Q ss_pred EEEEEEcCCC----eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 101 KITRIVLQQT----PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 101 ~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
++.++..... ...+.|..+ .+++.+.+|.+.+++........ ...+|...|
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd-----~lItVSl~G~in~ln~~d~~~~~--------------------~i~GHnK~I 323 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKD-----HLITVSLSGTINYLNPSDPSVLK--------------------VISGHNKSI 323 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCC-----eEEEEEcCcEEEEecccCCChhh--------------------eecccccce
Confidence 9999987654 345555533 69999999999999988877332 223455599
Q ss_pred eEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcccc----
Q 008844 177 TAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNG---- 252 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~---- 252 (551)
+++..++++++|++|+.||.|.-|+..++..-......|...|.+++-+..+ .|++++.|.++++.++....-..
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~ 402 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVV 402 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCccccccee
Confidence 9999999999999999999999999998877655544677788887776544 46667777788777521100000
Q ss_pred -------------------------chhhhhhhcc----C--------CCCC-----------cceeeeeccc--eeeee
Q 008844 253 -------------------------LEALVDIEKG----I--------AEPN-----------GIEKMKMVGS--KCLAL 282 (551)
Q Consensus 253 -------------------------~~~~~~~~~~----~--------~~~~-----------~~~~~~~~~~--~~~~~ 282 (551)
...++..... . ..+. .+..+...+. .....
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~ 482 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK 482 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee
Confidence 0000000000 0 0000 0011111111 11223
Q ss_pred ecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce-eEEEecCCCceEEEEEecCCCeEEEEcCCCcE
Q 008844 283 FREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL-VKILEGPKEALIDLAWHPVHPIIVSVSLTGWV 360 (551)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~-~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i 360 (551)
...|...++ .++||||+.|||++.. .+.+.+||+. .+. ...+.-|+..|.+|+|+|+..+||||+.|..|
T Consensus 483 ~~~h~a~iT-----~vaySpd~~yla~~Da---~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 483 LLEHRAAIT-----DVAYSPDGAYLAAGDA---SRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred eecccCCce-----EEEECCCCcEEEEecc---CCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 445666666 9999999999999999 8999999999 443 33445599999999999999999999999999
Q ss_pred EEEecCCCCcc
Q 008844 361 YIWAKDYTENW 371 (551)
Q Consensus 361 ~iW~~~~~~~~ 371 (551)
.||++..+...
T Consensus 555 iiysv~kP~~~ 565 (603)
T KOG0318|consen 555 IIYSVKKPAKH 565 (603)
T ss_pred EEEEccChhhh
Confidence 99999987643
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-35 Score=262.43 Aligned_cols=282 Identities=18% Similarity=0.286 Sum_probs=253.1
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-C
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK-G 99 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~-~ 99 (551)
.|..+|+.+-|+|+-.++|+++.|++|++||+.++++...+++| ...|..|+|+..|++|++++.|-.+++||+.+ .
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH--t~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH--TDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc--ccceeEEEEecCccEEEecCCccchhheeHHHHH
Confidence 37789999999999999999999999999999999999999877 88899999999999999999999999999976 4
Q ss_pred eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 100 EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 100 ~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
++++....|. .+.++.|.|.+ ..+++++.|.+|+.|++.++.+....... ..-+..
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h--------------------~ewvr~ 240 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGH--------------------SEWVRM 240 (406)
T ss_pred HHHHHhcCcccceeeEEEEecC---CeeeecccccceeEEecccceeEEeccCc--------------------hHhEEE
Confidence 5666666654 56788888986 48999999999999999999887654332 227889
Q ss_pred EEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeC---------------CCEEEEeeCCCeEEEE
Q 008844 179 ACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN---------------GQYLLTNSNDRTIRIY 243 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~---------------g~~l~t~s~Dg~i~iw 243 (551)
+..+.||.++++++.|.+|++|-+.++++...+. .|..+|.+++|.|. ++++.+++.|++|++|
T Consensus 241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred EEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 9999999999999999999999999998877776 89999999999762 3589999999999999
Q ss_pred eCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEe
Q 008844 244 DNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD 323 (551)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd 323 (551)
| ...+.|+.++.+|...|. .++|+|.|+||+++.. |++|++||
T Consensus 320 d-----------------------------v~tg~cL~tL~ghdnwVr-----~~af~p~Gkyi~ScaD---Dktlrvwd 362 (406)
T KOG0295|consen 320 D-----------------------------VSTGMCLFTLVGHDNWVR-----GVAFSPGGKYILSCAD---DKTLRVWD 362 (406)
T ss_pred e-----------------------------ccCCeEEEEEecccceee-----eeEEcCCCeEEEEEec---CCcEEEEE
Confidence 9 344789999999999998 8899999999999999 99999999
Q ss_pred cC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 324 RA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 324 ~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
++ ++++..+..|..-|+++.|+.+.++++||+.|.++++|..
T Consensus 363 l~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99 9999999999999999999999999999999999999964
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.9e-36 Score=272.07 Aligned_cols=281 Identities=16% Similarity=0.288 Sum_probs=238.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
.+|..+.|.|+|+.|++|+..|.+.+|+..+-.....+.. |..+|+++.|+++|.+++||+.+|.|++|+..-.. +.
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQa--HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk 173 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQA--HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VK 173 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhh--hcccceeEEEccCCCEEEEcCCCceEEecccchhh-hH
Confidence 4689999999999999999999999999855444444444 59999999999999999999999999999975443 33
Q ss_pred EEEc-C-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 104 RIVL-Q-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 104 ~~~~-~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
.+.. + ..+..++|+|.. ..+++|+.|+.|+|||....+.... ..+|...|.++.|
T Consensus 174 ~~~ahh~eaIRdlafSpnD---skF~t~SdDg~ikiWdf~~~kee~v--------------------L~GHgwdVksvdW 230 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPND---SKFLTCSDDGTIKIWDFRMPKEERV--------------------LRGHGWDVKSVDW 230 (464)
T ss_pred HhhHhhhhhhheeccCCCC---ceeEEecCCCeEEEEeccCCchhhe--------------------eccCCCCcceecc
Confidence 3433 3 468899999964 4899999999999999987765322 2456679999999
Q ss_pred eeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhc
Q 008844 182 NKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEK 261 (551)
Q Consensus 182 s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (551)
+|...+|++|+.|..|++||.+++.++.++. .|...|..+.|++++++|+++|.|..+++||+.
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR--------------- 294 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR--------------- 294 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehh---------------
Confidence 9999999999999999999999999999986 899999999999999999999999999999932
Q ss_pred cCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-CceeEEE-ecCCCc
Q 008844 262 GIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-GYLVKIL-EGPKEA 338 (551)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l-~~h~~~ 338 (551)
..+.+..+++|...+. ++.|+| ...+|++|+. ||.|..|.+. .+++..+ .+|...
T Consensus 295 --------------~mkEl~~~r~Hkkdv~-----~~~WhP~~~~lftsgg~---Dgsvvh~~v~~~~p~~~i~~AHd~~ 352 (464)
T KOG0284|consen 295 --------------TMKELFTYRGHKKDVT-----SLTWHPLNESLFTSGGS---DGSVVHWVVGLEEPLGEIPPAHDGE 352 (464)
T ss_pred --------------HhHHHHHhhcchhhhe-----eeccccccccceeeccC---CCceEEEeccccccccCCCcccccc
Confidence 2344778889999998 888898 4567778888 9999999998 5555444 569999
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
|.+++|||-|.+|++|+.|.++++|.-..+
T Consensus 353 iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 353 IWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred eeeeeccccceeEeecCCCcceeeeccCCC
Confidence 999999999999999999999999987653
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=272.69 Aligned_cols=287 Identities=18% Similarity=0.312 Sum_probs=239.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCC-CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSD-GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~d-g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
.+|..++|+..|.+||.||.. |.+-||++.+...+....+ |...+++++++|||.++++|+.||.|+|||...|-|+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg--H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG--HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccc--cccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 678999999999999999875 8999999998777666655 5999999999999999999999999999999999999
Q ss_pred EEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 103 TRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 103 ~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
.++..|. .+..+.|+..+. .+++.+.||+++.||+............. +....|++.
T Consensus 386 vTFteHts~Vt~v~f~~~g~---~llssSLDGtVRAwDlkRYrNfRTft~P~-------------------p~Qfscvav 443 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGN---VLLSSSLDGTVRAWDLKRYRNFRTFTSPE-------------------PIQFSCVAV 443 (893)
T ss_pred EEeccCCCceEEEEEEecCC---EEEEeecCCeEEeeeecccceeeeecCCC-------------------ceeeeEEEE
Confidence 9998876 477888988754 89999999999999998877554332211 126789999
Q ss_pred eeCCCEEEEEecCc-eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhh
Q 008844 182 NKYGDLVYVGNSKG-EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIE 260 (551)
Q Consensus 182 s~~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (551)
.|.|.++++|+.|. .|++|++++|+.+..+. +|.++|.+++|+|.+..|+++|.|.+||+|++...
T Consensus 444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s------------ 510 (893)
T KOG0291|consen 444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS------------ 510 (893)
T ss_pred cCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccCeEEeccccceEEEEEeecc------------
Confidence 99999999998875 69999999999999997 99999999999999999999999999999994322
Q ss_pred ccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec-----
Q 008844 261 KGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG----- 334 (551)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~----- 334 (551)
...+.++. +...+. .++|+|+|+-||+++. ||.|.+||.. +..+..+.|
T Consensus 511 ----------------~~~vEtl~-i~sdvl-----~vsfrPdG~elaVaTl---dgqItf~d~~~~~q~~~IdgrkD~~ 565 (893)
T KOG0291|consen 511 ----------------SGTVETLE-IRSDVL-----AVSFRPDGKELAVATL---DGQITFFDIKEAVQVGSIDGRKDLS 565 (893)
T ss_pred ----------------CceeeeEe-ecccee-----EEEEcCCCCeEEEEEe---cceEEEEEhhhceeeccccchhhcc
Confidence 11222232 233344 8899999999999999 9999999998 666644433
Q ss_pred ---------------CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 335 ---------------PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 335 ---------------h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
....++.+++++||.+|++||....|+||++..+-...
T Consensus 566 ~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 566 GGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred ccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 12468999999999999999999999999998865433
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-32 Score=263.37 Aligned_cols=281 Identities=26% Similarity=0.458 Sum_probs=240.5
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
.|.++|++++|+|++++|++++.+|.|++|++.++.....+..| ...+..+.|+|++++|++++.++.|.+|++.+++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH--TGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC--CcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 37899999999999999999999999999999988877777665 8889999999999999999999999999999888
Q ss_pred EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 101 KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.+..+..+. .+..+.|++.+ .+++++..++.+.+|++.++....... .+...+.++
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~i~~~ 141 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDG---RILSSSSRDKTIKVWDVETGKCLTTLR--------------------GHTDWVNSV 141 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCC---CEEEEecCCCeEEEEECCCcEEEEEec--------------------cCCCcEEEE
Confidence 888887665 68889999873 366666679999999998665433211 122379999
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
+|+|++.++++++.+|.|.+||+++++.+..+. .|...|.++.|+|+++.|++++.++.|++||+..
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~------------ 208 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST------------ 208 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCC------------
Confidence 999999999988889999999999888877776 7778999999999999999999999999999221
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCc
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEA 338 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~ 338 (551)
...+..+..+...+. +++|+|++.++++++. ++.|++|++. +..+..+.+|...
T Consensus 209 -----------------~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~ 263 (289)
T cd00200 209 -----------------GKCLGTLRGHENGVN-----SVAFSPDGYLLASGSE---DGTIRVWDLRTGECVQTLSGHTNS 263 (289)
T ss_pred -----------------CceecchhhcCCceE-----EEEEcCCCcEEEEEcC---CCcEEEEEcCCceeEEEccccCCc
Confidence 233444545665665 8899999999999997 8999999999 8889999999999
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
|.+++|+|++++|++++.||.|++|+
T Consensus 264 i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 264 VTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999996
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-33 Score=259.81 Aligned_cols=294 Identities=18% Similarity=0.273 Sum_probs=241.8
Q ss_pred cccceEEEEEEcCCCC-EEEEEeCCCeEEEEeccC--Cceee--Eee------cc--cccccEEEEEecCCCCEEEEEeC
Q 008844 21 LEHGVMKCIAFNRRGT-LLAAGCSDGSCVIWDFET--RGIAK--ELR------DK--ECVAAITSVCWSKYGHRILVSAA 87 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~--~~~~~--~~~------~~--~h~~~V~~l~~s~~g~~l~s~s~ 87 (551)
.|..+|.+++|+|-.. +|++|+.+-+.++|++.. ..... .|+ ++ .....|++|+|+.+|.+|++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3788999999999766 999999999999999874 11111 111 11 12468999999999999999999
Q ss_pred CCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 88 DKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 88 dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
||.+++|+. +|.++.++..|. ++..+.|+..+. ++++++.|+++.+||..++...+.......
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~---yilS~~vD~ttilwd~~~g~~~q~f~~~s~------------ 319 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGT---YILSGGVDGTTILWDAHTGTVKQQFEFHSA------------ 319 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCC---EEEeccCCccEEEEeccCceEEEeeeeccC------------
Confidence 999999995 677777776665 688999998754 899999999999999999887654322211
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCc
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNL 246 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~ 246 (551)
+...+.|-.+ ..|++.+.||.|+++.+....++.++. +|.+.|.+|.|+|.|.+|++++.|++++||.
T Consensus 320 --------~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs-- 387 (524)
T KOG0273|consen 320 --------PALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWS-- 387 (524)
T ss_pred --------CccceEEecC-ceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeee--
Confidence 2244566544 468999999999999999999988887 6999999999999999999999999999998
Q ss_pred CCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC---------CEEEEeeccCCcc
Q 008844 247 LPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG---------EWVIAGSASKGEH 317 (551)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg---------~~l~~gs~~~~dg 317 (551)
.....+...+..|...|. .+.|||.| ..|++++. |+
T Consensus 388 ---------------------------~~~~~~~~~l~~Hskei~-----t~~wsp~g~v~~n~~~~~~l~sas~---ds 432 (524)
T KOG0273|consen 388 ---------------------------MGQSNSVHDLQAHSKEIY-----TIKWSPTGPVTSNPNMNLMLASASF---DS 432 (524)
T ss_pred ---------------------------cCCCcchhhhhhhcccee-----eEeecCCCCccCCCcCCceEEEeec---CC
Confidence 223566777888988888 66677644 57888888 99
Q ss_pred eEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceeecCC
Q 008844 318 KIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFAPD 377 (551)
Q Consensus 318 ~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~spd 377 (551)
+|++||+. |.++..|..|+.+|.+|+|+|++++||+|+.||.|.||++.+++....+..+
T Consensus 433 tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 433 TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred eEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 99999999 9999999999999999999999999999999999999999998766544433
No 21
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.6e-33 Score=238.85 Aligned_cols=282 Identities=21% Similarity=0.337 Sum_probs=248.7
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC-CCCEEEEEeCCCCEEEEEcCCCe
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK-YGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
|...|.+++|+.+|..||+|+.|+++.+|+++..+....+...+|...|-.++|+| ...+|++++.|.+|++||++.++
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 67899999999999999999999999999999888888877778899999999988 46789999999999999999999
Q ss_pred EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 101 KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
++..+.....-..+.|+|++. +++++..+..|.++|.++.+..... ...+.+.-++
T Consensus 99 ~~~~i~~~~eni~i~wsp~g~---~~~~~~kdD~it~id~r~~~~~~~~---------------------~~~~e~ne~~ 154 (313)
T KOG1407|consen 99 CTARIETKGENINITWSPDGE---YIAVGNKDDRITFIDARTYKIVNEE---------------------QFKFEVNEIS 154 (313)
T ss_pred EEEEeeccCcceEEEEcCCCC---EEEEecCcccEEEEEecccceeehh---------------------cccceeeeee
Confidence 999999888889999999875 7999999999999999887754321 1122678899
Q ss_pred EeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhh
Q 008844 181 FNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIE 260 (551)
Q Consensus 181 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (551)
|+.++++++..+..|.|.|.....-+++..+. .|.....||.|+|+|++||+|+.|..+.+||
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD---------------- 217 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWD---------------- 217 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccC----------------
Confidence 99888999988889999999999999999887 8999999999999999999999999999999
Q ss_pred ccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCce
Q 008844 261 KGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEAL 339 (551)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v 339 (551)
.....|++.+..+.-+|. .+.||.||++||+|+. |..|-|=++. |..+..++ +.++.
T Consensus 218 -------------~~ELiC~R~isRldwpVR-----TlSFS~dg~~lASaSE---Dh~IDIA~vetGd~~~eI~-~~~~t 275 (313)
T KOG1407|consen 218 -------------VDELICERCISRLDWPVR-----TLSFSHDGRMLASASE---DHFIDIAEVETGDRVWEIP-CEGPT 275 (313)
T ss_pred -------------hhHhhhheeeccccCceE-----EEEeccCcceeeccCc---cceEEeEecccCCeEEEee-ccCCc
Confidence 223567888888888887 8999999999999999 9999999999 99998887 68899
Q ss_pred EEEEEecCCCeEEEEcCC---------CcEEEEecC
Q 008844 340 IDLAWHPVHPIIVSVSLT---------GWVYIWAKD 366 (551)
Q Consensus 340 ~~l~~sp~~~~l~s~s~d---------g~i~iW~~~ 366 (551)
..++|||..++||-++.| |.|+|+-+.
T Consensus 276 ~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 276 FTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999999999999988763 456666553
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=235.95 Aligned_cols=279 Identities=19% Similarity=0.284 Sum_probs=238.4
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
++++|.++.|+-+|+|.++++.|.+|++|+...+.+++++.+| ...|..++.+.|+..|++|+.|..|.+||+.+|+.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh--G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv 93 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH--GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV 93 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC--CceeeeccccccccccccCCCCceEEEEEcccCee
Confidence 7799999999999999999999999999999999999999887 77899999999999999999999999999999999
Q ss_pred EEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 102 ITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 102 ~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
++.+++|.. +..+.|+..+ .++++++.|..+++||.+......+.+.. .....|.++.
T Consensus 94 ~Rr~rgH~aqVNtV~fNees---SVv~SgsfD~s~r~wDCRS~s~ePiQild------------------ea~D~V~Si~ 152 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEES---SVVASGSFDSSVRLWDCRSRSFEPIQILD------------------EAKDGVSSID 152 (307)
T ss_pred eeecccccceeeEEEecCcc---eEEEeccccceeEEEEcccCCCCccchhh------------------hhcCceeEEE
Confidence 999999875 6677787654 48999999999999999987654322111 1111566666
Q ss_pred EeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhh
Q 008844 181 FNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIE 260 (551)
Q Consensus 181 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (551)
.+ +..|++|+.||+++.||++.|+....+ ...+|+++.|+++++.+++++.|++||+.|
T Consensus 153 v~--~heIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlD---------------- 211 (307)
T KOG0316|consen 153 VA--EHEIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLD---------------- 211 (307)
T ss_pred ec--ccEEEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecc----------------
Confidence 64 568999999999999999999876654 367899999999999999999999999999
Q ss_pred ccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCc-
Q 008844 261 KGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEA- 338 (551)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~- 338 (551)
..+++.+..+.+|...-.++ .++++.....+++|+. ||.|++||+. ..++..+..|...
T Consensus 212 -------------k~tGklL~sYkGhkn~eykl---dc~l~qsdthV~sgSE---DG~Vy~wdLvd~~~~sk~~~~~~v~ 272 (307)
T KOG0316|consen 212 -------------KETGKLLKSYKGHKNMEYKL---DCCLNQSDTHVFSGSE---DGKVYFWDLVDETQISKLSVVSTVI 272 (307)
T ss_pred -------------cchhHHHHHhcccccceeee---eeeecccceeEEeccC---CceEEEEEeccceeeeeeccCCcee
Confidence 23366677788888776666 7899999999999999 9999999999 8899999988877
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
|.+++++|.-..|+++. ++.+.+|-
T Consensus 273 v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 273 VTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EEeeecccCccceeEec-CCceecee
Confidence 89999999998888777 45666665
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=280.83 Aligned_cols=286 Identities=27% Similarity=0.458 Sum_probs=245.0
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEc-CC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG--IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDV-LK 98 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~-~~ 98 (551)
+...|.|+.|+++|++|++++.++.|++|++.+.. ..+.+.+ |...|.+++|+|++++|++++.|++|+|||+ ..
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~--h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG--HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccc--cccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 35789999999999999999999999999998777 6666654 5999999999999999999999999999999 55
Q ss_pred CeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 99 GEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 99 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
+..++.+.+|.. ++++.|+|.+ .++++++.|+++++||++++...... ..|...|+
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~~~~~~~~l--------------------~~hs~~is 292 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRIWDVRTGECVRKL--------------------KGHSDGIS 292 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEEEeccCCeEEEee--------------------eccCCceE
Confidence 688899988764 7899999986 38999999999999999997765443 23444899
Q ss_pred EEEEeeCCCEEEEEecCceEEEEECCCCc--EEEeeeccCcc-ceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 178 AACFNKYGDLVYVGNSKGEILVIDHKSNQ--IRALVPVSGAA-VIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~~-~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
+++|++++++|++++.||.|+|||+.++. ++..+...... +++++.|+|++.+|++++.|+.+++|++
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l--------- 363 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDL--------- 363 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEc---------
Confidence 99999999999999999999999999999 44555422223 6999999999999999999999999992
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEe
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
....++..+.+|...+ ..+.+..+++.|.++++|+. |+.|++|++. +..+..+.
T Consensus 364 --------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~sg~~---d~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 364 --------------------RSGKSVGTYTGHSNLV--RCIFSPTLSTGGKLIYSGSE---DGSVYVWDSSSGGILQRLE 418 (456)
T ss_pred --------------------cCCcceeeecccCCcc--eeEecccccCCCCeEEEEeC---CceEEEEeCCccchhhhhc
Confidence 2245566677766653 22335566889999999999 9999999999 99999999
Q ss_pred cC-CCceEEEEEecCCCeEEEEc--CCCcEEEEecC
Q 008844 334 GP-KEALIDLAWHPVHPIIVSVS--LTGWVYIWAKD 366 (551)
Q Consensus 334 ~h-~~~v~~l~~sp~~~~l~s~s--~dg~i~iW~~~ 366 (551)
+| ...+..+.|+|..+++++++ .|+.|++|...
T Consensus 419 ~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 419 GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99 89999999999999999998 69999999864
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.2e-32 Score=242.86 Aligned_cols=314 Identities=17% Similarity=0.213 Sum_probs=245.4
Q ss_pred cccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC
Q 008844 19 EYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 19 ~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 98 (551)
...|...|.+++.+|+.+++|||+.|..-.||++.++..+..+.+| +..|+++.|+.+|.+|+||+.+|.|+||.+.+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgH--KDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGH--KDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCC--CCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 3448899999999999999999999999999999999988888876 99999999999999999999999999999999
Q ss_pred CeEEEEEE-cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 99 GEKITRIV-LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
+.....+. .-..+.-+.|||.. .++++++.||.+..|.+..+....+. .+|..+++
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a---~illAG~~DGsvWmw~ip~~~~~kv~--------------------~Gh~~~ct 194 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRA---HILLAGSTDGSVWMWQIPSQALCKVM--------------------SGHNSPCT 194 (399)
T ss_pred CceEEEeecccCceEEEEecccc---cEEEeecCCCcEEEEECCCcceeeEe--------------------cCCCCCcc
Confidence 98888876 34567788999964 48999999999999999985433221 23444889
Q ss_pred EEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcc-------
Q 008844 178 AACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLK------- 250 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~------- 250 (551)
+-.|.|+|+.+++|..||+|++|++.+++++..+.........++.++..+..++.|+.++.+++-......-
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence 9999999999999999999999999999998887544455666777777777777777776666555111000
Q ss_pred ---------ccchhhhhhhcc-------CCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC
Q 008844 251 ---------NGLEALVDIEKG-------IAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK 314 (551)
Q Consensus 251 ---------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~ 314 (551)
.....+..+... ....++...+.-.....++....|+..|. .+.|-+ ..||++++.
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~-----~l~w~~-t~~l~t~c~-- 346 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVT-----KLKWLN-TDYLLTACA-- 346 (399)
T ss_pred CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceE-----EEEEcC-cchheeecc--
Confidence 000000000000 00111111111122334556667778877 778888 789999999
Q ss_pred CcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 315 GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 315 ~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+|.|++||.+ |+++..+.||...|.+++++|+.++++|+|.|++.+||++.
T Consensus 347 -~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 347 -NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999 99999999999999999999999999999999999999874
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-33 Score=271.12 Aligned_cols=332 Identities=15% Similarity=0.198 Sum_probs=241.9
Q ss_pred CCccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 1 MNAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 1 mnl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
|-+++|+..++++.+.... .|.+||.-++|+|.|.+|++|+.||.|+|||+..+.+...|++| .+.|.++.|+|+-+
T Consensus 84 ~llrv~~L~tgk~irswKa-~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~--gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKA-IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH--GGVVSSLLFHPHWN 160 (775)
T ss_pred ceEEEEEcccchHhHhHhh-ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCC--CceEEEEEeCCccc
Confidence 4578999999987776654 48899999999999999999999999999999999999999876 67777777766533
Q ss_pred --EEEEEeCCCCEEEEEcCCC-------------------------------------------eEEEEEEcCCCeeEEE
Q 008844 81 --RILVSAADKSLTLWDVLKG-------------------------------------------EKITRIVLQQTPLQAR 115 (551)
Q Consensus 81 --~l~s~s~dg~i~vwd~~~~-------------------------------------------~~~~~~~~~~~~~~~~ 115 (551)
.|++|..|+++++||+++. +....+......-++.
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv 240 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV 240 (775)
T ss_pred hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence 3566666677777766533 2222222333333444
Q ss_pred EecCCCC--CcEEEEeeCCCCcEEEEcCCCceeeecccc-----------------------------------------
Q 008844 116 LHPGSST--PSLCLACPLSSAPMIVDLSTGSTSILPIAV----------------------------------------- 152 (551)
Q Consensus 116 ~~p~~~~--~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----------------------------------------- 152 (551)
+.+.+.+ ..++++.+.+|.+++||..++.........
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv 320 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV 320 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence 4444222 347888888899998887665421100000
Q ss_pred --CC----------CCCCCCC-----------------------------------------CC----------------
Q 008844 153 --PD----------VANGIAP-----------------------------------------SS---------------- 163 (551)
Q Consensus 153 --~~----------~~~~~~~-----------------------------------------~~---------------- 163 (551)
.+ ....++. ..
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 00 0000000 00
Q ss_pred -CCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcE----EE----eeeccCccceEEEEEeeCCCEEEE
Q 008844 164 -RNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQI----RA----LVPVSGAAVIKNIVFSRNGQYLLT 233 (551)
Q Consensus 164 -~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~----~~----~~~~~~~~~i~~l~~s~~g~~l~t 233 (551)
........|...|.+++++..+ .+|++++.|++|++|++...+. +. .....|...|++++++|+.++|+|
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 0000112344566677776555 5677777788888887765211 11 112368899999999999999999
Q ss_pred eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeecc
Q 008844 234 NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS 313 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~ 313 (551)
||.|.+.+||++ .....+.++.+|...+. ++.|+|..+.||+++.
T Consensus 481 ~SqDktaKiW~l-----------------------------e~~~l~~vLsGH~RGvw-----~V~Fs~~dq~laT~Sg- 525 (775)
T KOG0319|consen 481 GSQDKTAKIWDL-----------------------------EQLRLLGVLSGHTRGVW-----CVSFSKNDQLLATCSG- 525 (775)
T ss_pred cccccceeeecc-----------------------------cCceEEEEeeCCccceE-----EEEeccccceeEeccC-
Confidence 999999999992 12566788999999998 9999999999999999
Q ss_pred CCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 314 KGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 314 ~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
|.+|+||.+. +.++++|.||...|..+.|-.++..|+||+.||.|+||++.+.++..
T Consensus 526 --D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 526 --DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred --CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 9999999999 99999999999999999999999999999999999999999977543
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=256.27 Aligned_cols=272 Identities=17% Similarity=0.324 Sum_probs=231.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
..|.|+.+ |...+++|..|.+|+|||..+..+++.+.+| ++.|.|+.|. .+.|++|+.|.+|+|||+++|+++.
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GH--tGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGH--TGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcC--CCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 57899888 4568999999999999999999999999876 9999999995 5799999999999999999999999
Q ss_pred EEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q 008844 104 RIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN 182 (551)
Q Consensus 104 ~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 182 (551)
++..|. .+..+.|+.+ ++++++.|.++.+||+.......+.. ...+|...|+.+.|+
T Consensus 272 tlihHceaVLhlrf~ng-----~mvtcSkDrsiaVWdm~sps~it~rr-----------------VLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-----YMVTCSKDRSIAVWDMASPTDITLRR-----------------VLVGHRAAVNVVDFD 329 (499)
T ss_pred HHhhhcceeEEEEEeCC-----EEEEecCCceeEEEeccCchHHHHHH-----------------HHhhhhhheeeeccc
Confidence 987775 5778888765 89999999999999998766332211 112233378888885
Q ss_pred eCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhcc
Q 008844 183 KYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKG 262 (551)
Q Consensus 183 ~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (551)
.++|++++.|.+|++|++.+++.+.++. +|...|-|+.+ .|+++++|+.|.+||+||
T Consensus 330 --~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwd------------------ 386 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWD------------------ 386 (499)
T ss_pred --cceEEEecCCceEEEEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEe------------------
Confidence 4599999999999999999999999987 89999988887 689999999999999999
Q ss_pred CCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc---------eeEEE
Q 008844 263 IAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY---------LVKIL 332 (551)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~---------~~~~l 332 (551)
...+.|++.+.+|+..|. ++.| |.+.|++|.+ ||.|+|||+. +. ++..+
T Consensus 387 -----------i~~G~cLRvLeGHEeLvR-----ciRF--d~krIVSGaY---DGkikvWdl~aaldpra~~~~~Cl~~l 445 (499)
T KOG0281|consen 387 -----------IECGACLRVLEGHEELVR-----CIRF--DNKRIVSGAY---DGKIKVWDLQAALDPRAPASTLCLRTL 445 (499)
T ss_pred -----------ccccHHHHHHhchHHhhh-----heee--cCceeeeccc---cceEEEEecccccCCcccccchHHHhh
Confidence 445889999999999998 6677 5688999999 9999999998 32 44556
Q ss_pred ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
.-|++.|..+.| |...|++++.|.+|.|||+..+.
T Consensus 446 v~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 446 VEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred hhccceeEEEee--cceEEEeccCCCeEEEEEcCCCC
Confidence 678999999999 77899999999999999987653
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-33 Score=275.44 Aligned_cols=231 Identities=17% Similarity=0.323 Sum_probs=202.3
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
+.|.++|..+.|+|+.++|++++.|++||+|.+.+..++-.+++| ..||..+.|+|.|-|++|++.|++.++|.....
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH--~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH--LAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCC--CcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 449999999999999999999999999999999999999999866 999999999999999999999999999998887
Q ss_pred eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 100 EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.+++.+.+|.. .+.|+
T Consensus 526 ~PlRifaghls----------------------------------------------------------------DV~cv 541 (707)
T KOG0263|consen 526 KPLRIFAGHLS----------------------------------------------------------------DVDCV 541 (707)
T ss_pred Cchhhhccccc----------------------------------------------------------------ccceE
Confidence 77666665543 78899
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
.|+|+..|+++|+.|.+|++||+.+|..++.+. +|.++|.+++|+|+|++|++|+.||.|.|||
T Consensus 542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD--------------- 605 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLIKIWD--------------- 605 (707)
T ss_pred EECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcEEEEE---------------
Confidence 999999999999999999999999999999997 8999999999999999999999999999999
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---Cc---------
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GY--------- 327 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~--------- 327 (551)
..++..+..+.+|.+.|. ++.||.+|..||+|+. |+.|++||+. +.
T Consensus 606 --------------l~~~~~v~~l~~Ht~ti~-----SlsFS~dg~vLasgg~---DnsV~lWD~~~~~~~~~~~~~~~~ 663 (707)
T KOG0263|consen 606 --------------LANGSLVKQLKGHTGTIY-----SLSFSRDGNVLASGGA---DNSVRLWDLTKVIELLNLGHISTS 663 (707)
T ss_pred --------------cCCCcchhhhhcccCcee-----EEEEecCCCEEEecCC---CCeEEEEEchhhcccccccccccc
Confidence 333667888899988888 8999999999999999 9999999987 22
Q ss_pred -------------eeEEEecCCCceEEEEEecCCCeEEEE
Q 008844 328 -------------LVKILEGPKEALIDLAWHPVHPIIVSV 354 (551)
Q Consensus 328 -------------~~~~l~~h~~~v~~l~~sp~~~~l~s~ 354 (551)
++..+.....+|..|.|...+-.|+.|
T Consensus 664 ~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 664 NSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 344444455677777776655444443
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=237.02 Aligned_cols=257 Identities=19% Similarity=0.299 Sum_probs=222.9
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC------ceeeEeecccccccEEEEEec
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR------GIAKELRDKECVAAITSVCWS 76 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~------~~~~~~~~~~h~~~V~~l~~s 76 (551)
|.|||.++......+.. ...-|..++|+|.|+++|+|+.|....||++.+. ...+.+.+| .+-+.|+.|.
T Consensus 79 lIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH--tgylScC~f~ 154 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH--TGYLSCCRFL 154 (343)
T ss_pred EEEEEcccccceeEEec--CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCc--cceeEEEEEc
Confidence 67999998876666654 5677999999999999999999999999999865 345556555 9999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCC
Q 008844 77 KYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDV 155 (551)
Q Consensus 77 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 155 (551)
+|+ .|+|++.|.++.+||+++|+.+..|.+|. .+.++.+.|. +.+.+++++.|...++||++.+...+..
T Consensus 155 dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~--~~ntFvSg~cD~~aklWD~R~~~c~qtF------ 225 (343)
T KOG0286|consen 155 DDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS--DGNTFVSGGCDKSAKLWDVRSGQCVQTF------ 225 (343)
T ss_pred CCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC--CCCeEEecccccceeeeeccCcceeEee------
Confidence 855 69999999999999999999999999886 5889999995 4669999999999999999999876543
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEeeCCCEEEEe
Q 008844 156 ANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~t~ 234 (551)
.+|...|++++|.|+|.-|++|+.|+++++||++..+.+..+.. .-..+|++++|+..|++|++|
T Consensus 226 --------------~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 226 --------------EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred --------------cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee
Confidence 34455899999999999999999999999999999998888842 224789999999999999999
Q ss_pred eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC
Q 008844 235 SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK 314 (551)
Q Consensus 235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~ 314 (551)
..|.++.+||.+. .+.+-.+.+|...|. ++..+|||.-|++|+.
T Consensus 292 y~d~~c~vWDtlk-----------------------------~e~vg~L~GHeNRvS-----cl~~s~DG~av~TgSW-- 335 (343)
T KOG0286|consen 292 YDDFTCNVWDTLK-----------------------------GERVGVLAGHENRVS-----CLGVSPDGMAVATGSW-- 335 (343)
T ss_pred ecCCceeEeeccc-----------------------------cceEEEeeccCCeeE-----EEEECCCCcEEEecch--
Confidence 9999999999432 455777889999998 8999999999999999
Q ss_pred CcceEEEEe
Q 008844 315 GEHKIYIWD 323 (551)
Q Consensus 315 ~dg~I~iwd 323 (551)
|..|+||.
T Consensus 336 -Ds~lriW~ 343 (343)
T KOG0286|consen 336 -DSTLRIWA 343 (343)
T ss_pred -hHheeecC
Confidence 99999994
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-32 Score=251.31 Aligned_cols=323 Identities=16% Similarity=0.215 Sum_probs=245.8
Q ss_pred ccccccCCCCccceee-cccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeec------------------
Q 008844 3 APIIDPLQGDFPEVIE-EYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRD------------------ 63 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~-~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~------------------ 63 (551)
+.|||-.+|+..-.|. .-.|.+.|.+|+|+||++.|+|++.|.+++|||+.+..+++++..
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 5688989998887777 455889999999999999999999999999999988665554321
Q ss_pred -----------------------ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE-EcCC-CeeEEEEec
Q 008844 64 -----------------------KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI-VLQQ-TPLQARLHP 118 (551)
Q Consensus 64 -----------------------~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~-~~~~~~~~p 118 (551)
.+|...|++|+.++++++|++|+.||.|.-|+..+|..-+.. ..|. .+.++..+.
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 167999999999999999999999999999999888655443 2232 344554444
Q ss_pred CCCCCcEEEEeeCCCCcEEEEcCCCceeee---cccc-------CCCC-CC--------CCCCCCCCCCCCCCCCCceEE
Q 008844 119 GSSTPSLCLACPLSSAPMIVDLSTGSTSIL---PIAV-------PDVA-NG--------IAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~---~~~~-------~~~~-~~--------~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.+ .+++++.|.++++.++..+..... .+.. .... .. ...............+...++
T Consensus 374 ~~----~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v 449 (603)
T KOG0318|consen 374 SG----ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV 449 (603)
T ss_pred CC----cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence 22 588999999999998754432211 1110 0000 00 000012222333456688999
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEe-eeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRAL-VPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
+++|++..+++|+.||.|+||.+........ ....|.++|++++|+|++.+||++...+.+.+||+...
T Consensus 450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~---------- 519 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR---------- 519 (603)
T ss_pred EEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC----------
Confidence 9999999999999999999999988664222 23389999999999999999999999999999993221
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEEEecCC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPK 336 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~ 336 (551)
......+.-|...|+ +++|+|+..+||+|+. |-+|.||++. .+.+....+|.
T Consensus 520 ------------------~~~~~~w~FHtakI~-----~~aWsP~n~~vATGSl---Dt~Viiysv~kP~~~i~iknAH~ 573 (603)
T KOG0318|consen 520 ------------------EVKTNRWAFHTAKIN-----CVAWSPNNKLVATGSL---DTNVIIYSVKKPAKHIIIKNAHL 573 (603)
T ss_pred ------------------ceecceeeeeeeeEE-----EEEeCCCceEEEeccc---cceEEEEEccChhhheEeccccc
Confidence 111223334666776 9999999999999999 9999999999 66677788899
Q ss_pred CceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 337 EALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 337 ~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
..|+.+.|-. ...|++.+.|..|++|++.
T Consensus 574 ~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 574 GGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cCceeEEEec-CceEEeccCcceeEEeccc
Confidence 9999999964 4578899999999999974
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=233.57 Aligned_cols=244 Identities=17% Similarity=0.264 Sum_probs=204.7
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE--EEEEEcCCCeeE
Q 008844 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK--ITRIVLQQTPLQ 113 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~ 113 (551)
-+||+++.|.+||+|...+|.+.+++.-. .+.|+.|...|+++.|++++ ...|++||++++.. +.++.++..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~--dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~k--- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHP--DSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTK--- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecC--ccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCC---
Confidence 48999999999999999999999999865 78999999999999999988 46799999988753 444444322
Q ss_pred EEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec
Q 008844 114 ARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS 193 (551)
Q Consensus 114 ~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~ 193 (551)
.|+++.|..+|+++++|+.
T Consensus 85 -------------------------------------------------------------NVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 85 -------------------------------------------------------------NVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred -------------------------------------------------------------ceEEEEEeecCeEEEecCC
Confidence 7899999999999999999
Q ss_pred CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeee
Q 008844 194 KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273 (551)
Q Consensus 194 dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (551)
||+++|||++...+.+.+ .+..+|+++..+|+...|++|..+|.|++||+..
T Consensus 104 Dgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~-------------------------- 155 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE-------------------------- 155 (311)
T ss_pred CceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccC--------------------------
Confidence 999999999997777777 7889999999999999999999999999999321
Q ss_pred eccceeeeeec-ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-------CceeEEEecCCCceEEEEEe
Q 008844 274 MVGSKCLALFR-EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-------GYLVKILEGPKEALIDLAWH 345 (551)
Q Consensus 274 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-------~~~~~~l~~h~~~v~~l~~s 345 (551)
..|...+. .-...+ .++...|||.+|+++.. .|..++|++- -.++..++.|.+.+..+.+|
T Consensus 156 ---~~c~~~liPe~~~~i-----~sl~v~~dgsml~a~nn---kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 156 ---NSCTHELIPEDDTSI-----QSLTVMPDGSMLAAANN---KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred ---CccccccCCCCCcce-----eeEEEcCCCcEEEEecC---CccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 11222221 122233 38899999999999998 8999999986 24667788999999999999
Q ss_pred cCCCeEEEEcCCCcEEEEecCCC----------Ccce---eecCCcceeceec
Q 008844 346 PVHPIIVSVSLTGWVYIWAKDYT----------ENWS---AFAPDFKELEENE 385 (551)
Q Consensus 346 p~~~~l~s~s~dg~i~iW~~~~~----------~~~~---~~spd~~~l~~~~ 385 (551)
|++++||++|.|.+++||+.++. +.|. +|+.|+++|....
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecC
Confidence 99999999999999999999875 3454 8999999887653
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-32 Score=235.19 Aligned_cols=265 Identities=16% Similarity=0.213 Sum_probs=206.5
Q ss_pred cccccC-----CCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 4 PIIDPL-----QGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 4 ~lwd~~-----~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
.+|+.. .|...+.+.. |...|..++.++||++.++++.|+++++||+.+++..+.|.+| ...|.+++|++|
T Consensus 41 i~W~L~~dd~~~G~~~r~~~G--HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH--~~dVlsva~s~d 116 (315)
T KOG0279|consen 41 IVWKLTSDDIKYGVPVRRLTG--HSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH--TKDVLSVAFSTD 116 (315)
T ss_pred EEEEeccCccccCceeeeeec--cceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEec--CCceEEEEecCC
Confidence 456544 3333444444 7788999999999999999999999999999999999999877 999999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeEEEEEEcC---CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCC
Q 008844 79 GHRILVSAADKSLTLWDVLKGEKITRIVLQ---QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDV 155 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 155 (551)
.+.|++|+.|.+|++|++.. .+..++... .-+.+++|+|... ..+++.++.|+++++||+++-+.....
T Consensus 117 n~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~-~p~Ivs~s~DktvKvWnl~~~~l~~~~------ 188 (315)
T KOG0279|consen 117 NRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNES-NPIIVSASWDKTVKVWNLRNCQLRTTF------ 188 (315)
T ss_pred CceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCC-CcEEEEccCCceEEEEccCCcchhhcc------
Confidence 99999999999999999864 455555433 3488999999853 568999999999999999998765433
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee
Q 008844 156 ANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
.+|...++.++++|||.++++|+.+|.+.+||++.++.+..+ .|...|.+++|+|+...|+.+
T Consensus 189 --------------~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~a- 251 (315)
T KOG0279|consen 189 --------------IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAA- 251 (315)
T ss_pred --------------ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeec-
Confidence 234448999999999999999999999999999999998888 899999999999987666655
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKG 315 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~ 315 (551)
.+..|+|||+... ..+..+.. . +.+...........+++||+||..|++|..
T Consensus 252 t~~sIkIwdl~~~-----~~v~~l~~-------------d-------~~g~s~~~~~~~clslaws~dG~tLf~g~t--- 303 (315)
T KOG0279|consen 252 TATSIKIWDLESK-----AVVEELKL-------------D-------GIGPSSKAGDPICLSLAWSADGQTLFAGYT--- 303 (315)
T ss_pred cCCceEEEeccch-----hhhhhccc-------------c-------ccccccccCCcEEEEEEEcCCCcEEEeeec---
Confidence 5566999993211 11111100 0 000011111112238899999999999999
Q ss_pred cceEEEEecC
Q 008844 316 EHKIYIWDRA 325 (551)
Q Consensus 316 dg~I~iwd~~ 325 (551)
++.|++|.+.
T Consensus 304 d~~irv~qv~ 313 (315)
T KOG0279|consen 304 DNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEee
Confidence 9999999863
No 32
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1e-32 Score=236.82 Aligned_cols=293 Identities=19% Similarity=0.274 Sum_probs=232.1
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
.|..+++-|.|+.+|.+|++++.|.++.||-..+|+.+.++.+| .+.|+|+....+.++|++|+.|.++++||+.+|+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GH--tGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH--TGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCC--CceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 38899999999999999999999999999999899999999877 9999999999999999999999999999999999
Q ss_pred EEEEEEcCCCeeEEEEecCCCCCcEEEEee-----CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 101 KITRIVLQQTPLQARLHPGSSTPSLCLACP-----LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
++..+....++..+.|++++. +++++. ..+.|.+++++........- ........+...
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn---~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~-------------ep~~kI~t~~sk 149 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGN---LILASTDKQMGYTCFVSVFDIRDDSSDIDSE-------------EPYLKIPTPDSK 149 (327)
T ss_pred EEEEeecCCeeEEEeeccCCc---EEEEEehhhcCcceEEEEEEccCChhhhccc-------------CceEEecCCccc
Confidence 999999999999999999864 555554 34568889887543211000 000001112238
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
++.+.|.|.+.+|++|..+|.|.+||++++..+......|...|+.|+++++..+++|++.|.+-++||+
T Consensus 150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~---------- 219 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV---------- 219 (327)
T ss_pred eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec----------
Confidence 8999999999999999999999999999997766555588999999999999999999999999999992
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC-----------CcceEEEEec
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK-----------GEHKIYIWDR 324 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~-----------~dg~I~iwd~ 324 (551)
..+..++.+ .+..++++.+++|-..+++.|+.-. |.-.-++|++
T Consensus 220 ----------------------~tl~v~Kty---~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~ 274 (327)
T KOG0643|consen 220 ----------------------RTLEVLKTY---TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL 274 (327)
T ss_pred ----------------------cceeeEEEe---eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH
Confidence 112222222 2333444899999877777765411 0011223333
Q ss_pred C-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 325 A-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 325 ~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
- .+.+..+++|-++|++|+|||+|+..+||+.||.|+|.-.+
T Consensus 275 i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 275 IFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 3 34667789999999999999999999999999999997654
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=244.19 Aligned_cols=280 Identities=14% Similarity=0.227 Sum_probs=239.7
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
|.+-|.|+++.|...+|++|+.|++|+|||+.+|++..++.+| ...|..+++|+-..||++++.|+.|+.||+...+.
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh--i~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH--IETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch--hheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 8899999999999999999999999999999999999999876 99999999999999999999999999999999999
Q ss_pred EEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 102 ITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 102 ~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
++.+.+|- .++++.++|.-. ++++++.|..+++||+++....... .+|...|..+.
T Consensus 228 IR~YhGHlS~V~~L~lhPTld---vl~t~grDst~RvWDiRtr~~V~~l--------------------~GH~~~V~~V~ 284 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLD---VLVTGGRDSTIRVWDIRTRASVHVL--------------------SGHTNPVASVM 284 (460)
T ss_pred HHHhccccceeEEEeccccce---eEEecCCcceEEEeeecccceEEEe--------------------cCCCCcceeEE
Confidence 99998885 588999998643 8999999999999999998765442 33445899999
Q ss_pred EeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhh
Q 008844 181 FNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIE 260 (551)
Q Consensus 181 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (551)
+.|-...+++|+.|++|++||++.++...++. .|...|.+++.+|....+|+++.| .|+-|++
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~d-nik~w~~--------------- 347 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPD-NIKQWKL--------------- 347 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCc-cceeccC---------------
Confidence 99988899999999999999999999987776 889999999999999888888776 5888981
Q ss_pred ccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEe---c--
Q 008844 261 KGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE---G-- 334 (551)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~---~-- 334 (551)
..+..+..+.+|...++ +++...|| ++++|+. +|.|.+||.. |...+.++ .
T Consensus 348 --------------p~g~f~~nlsgh~~iin-----tl~~nsD~-v~~~G~d---ng~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 348 --------------PEGEFLQNLSGHNAIIN-----TLSVNSDG-VLVSGGD---NGSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred --------------Cccchhhccccccceee-----eeeeccCc-eEEEcCC---ceEEEEEecCcCcccccccccccCC
Confidence 12445666788888887 67776665 5667777 7999999998 54433331 1
Q ss_pred ---CCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 335 ---PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 335 ---h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
....|.+.+|...+..|++|..|.+|++|.-+
T Consensus 405 Sl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 405 SLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 23568999999999999999999999999854
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4e-31 Score=286.48 Aligned_cols=285 Identities=14% Similarity=0.283 Sum_probs=226.8
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC----c----eeeEeecccccccEEEEEecC-CCCEEEEEeCCCCEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR----G----IAKELRDKECVAAITSVCWSK-YGHRILVSAADKSLT 92 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~----~----~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~ 92 (551)
|.+.|.+++|+|+|++||+|+.|+.|+||++.+. . ....+. +...|.+++|++ .+.+|++++.|++|+
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA---SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec---ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 7789999999999999999999999999997532 1 112222 246899999987 478999999999999
Q ss_pred EEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 93 LWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
|||+.+++.+..+..|. .+.++.|+|.. ..++++++.|+.+++||+.++........
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~--~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-------------------- 616 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSAD--PTLLASGSDDGSVKLWSINQGVSIGTIKT-------------------- 616 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCC--CCEEEEEcCCCEEEEEECCCCcEEEEEec--------------------
Confidence 99999999988887775 47899999742 34899999999999999988765432110
Q ss_pred CCCCceEEEEe-eCCCEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCc
Q 008844 172 PPFTPTAACFN-KYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPL 249 (551)
Q Consensus 172 ~~~~i~~~~~s-~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~ 249 (551)
...+.++.|+ ++|.+|++|+.||.|++||+++... +..+. .|...|.++.|. ++.+|++++.|++|+|||+..+.
T Consensus 617 -~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 617 -KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred -CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence 1168889995 5689999999999999999988763 44443 788999999997 78899999999999999943210
Q ss_pred cccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce
Q 008844 250 KNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL 328 (551)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~ 328 (551)
. .....++..+.+|...+. .++|+|++.+|++|+. |+.|+||+.. ..+
T Consensus 694 ~-----------------------~~~~~~l~~~~gh~~~i~-----~v~~s~~~~~lasgs~---D~~v~iw~~~~~~~ 742 (793)
T PLN00181 694 S-----------------------GINETPLHSFMGHTNVKN-----FVGLSVSDGYIATGSE---TNEVFVYHKAFPMP 742 (793)
T ss_pred c-----------------------ccCCcceEEEcCCCCCee-----EEEEcCCCCEEEEEeC---CCEEEEEECCCCCc
Confidence 0 001234566777877776 7899999999999999 9999999986 433
Q ss_pred eEEE-------------ecCCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 329 VKIL-------------EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 329 ~~~l-------------~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
+..+ ..|...|.+++|+|++.+|++++.||.|+||++
T Consensus 743 ~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 743 VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 3221 234567999999999999999999999999986
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-32 Score=263.30 Aligned_cols=310 Identities=16% Similarity=0.223 Sum_probs=256.5
Q ss_pred CccccccCCCCccceeecccccceEEEEEE-cCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAF-NRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~f-s~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
|+.++|..+......+.. .++.|..++| .|..++||+++..+.+++|++.+..+. .+.+ |...|.++....+|-
T Consensus 304 nl~l~d~~~l~i~k~ivG--~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~G--H~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQIVG--YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPG--HTEAVLSLDVWSSGD 378 (775)
T ss_pred eEEEEEccccEEehhhcC--CchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeC--chhheeeeeecccCc
Confidence 566777766666665555 4577888887 567799999999999999998877665 5554 599999999666788
Q ss_pred EEEEEeCCCCEEEEEcCCCe----EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCC
Q 008844 81 RILVSAADKSLTLWDVLKGE----KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDV 155 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 155 (551)
+|+||+.|+++++|.++++. ++....+|. .+..++++..+ ..++++++.|.++++|++...+....+...
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~--- 453 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVL--- 453 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC--ccEEEEecCCceEEEecCCCccccccccee---
Confidence 99999999999999885443 333444554 45666665443 568999999999999999884332221111
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee
Q 008844 156 ANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
........|...|+|++++|+.++|++|+.|.+.+||++.......++. +|...|.++.|+|..+.|+|+|
T Consensus 454 --------~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 454 --------TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred --------hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEecc
Confidence 1112233456699999999999999999999999999999888888887 9999999999999999999999
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKG 315 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~ 315 (551)
.|.+|+||. .....|+.++.+|...|. .+.|-.+|+.|++++.
T Consensus 525 gD~TvKIW~-----------------------------is~fSClkT~eGH~~aVl-----ra~F~~~~~qliS~~a--- 567 (775)
T KOG0319|consen 525 GDKTVKIWS-----------------------------ISTFSCLKTFEGHTSAVL-----RASFIRNGKQLISAGA--- 567 (775)
T ss_pred CCceEEEEE-----------------------------eccceeeeeecCccceeE-----eeeeeeCCcEEEeccC---
Confidence 999999999 444789999999999998 7899999999999999
Q ss_pred cceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 316 EHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 316 dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
||.|+||++. +.++..+..|...|.+++-+|...+++||+.||.|.+|.=.+
T Consensus 568 dGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999 999999999999999999999999999999999999998543
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.7e-31 Score=225.20 Aligned_cols=280 Identities=15% Similarity=0.230 Sum_probs=224.6
Q ss_pred ccceEEEEEEcCC-CCEEEEEeCCCeEEEEeccC---CceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC
Q 008844 22 EHGVMKCIAFNRR-GTLLAAGCSDGSCVIWDFET---RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 22 h~~~V~~l~fs~d-g~~latg~~dg~I~iwd~~~---~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~ 97 (551)
|.+.|..++|+|- |.+||+++.|..|+||+... -.+...+.. +|+..|.+++|+|.|++|++++.|.++.||.-.
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-cchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 7789999999998 99999999999999999884 334444544 689999999999999999999999999999765
Q ss_pred CC--eEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 98 KG--EKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 98 ~~--~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
.+ +++..+.+|.. +.+++|++++. ++++|+.+..+-||.+..+...-... ....|..
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~---~LATCSRDKSVWiWe~deddEfec~a-----------------VL~~Htq 151 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGN---YLATCSRDKSVWIWEIDEDDEFECIA-----------------VLQEHTQ 151 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCC---EEEEeeCCCeEEEEEecCCCcEEEEe-----------------eeccccc
Confidence 43 67888888875 78999999865 89999999999999988654332211 1234555
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCC---CcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccc
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKS---NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~ 251 (551)
.|..+.|+|...+|++++.|.+|++|.-.. -.+..++. .|...|.+++|++.|..|++++.|++++||...
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----- 225 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----- 225 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeec-----
Confidence 899999999999999999999999998762 34566775 788899999999999999999999999999721
Q ss_pred cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-C---c
Q 008844 252 GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-G---Y 327 (551)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~---~ 327 (551)
......|...+. .+.|. ...|++++. |+.|++|... + .
T Consensus 226 ----------------------------~~~~~~~sr~~Y-----~v~W~--~~~IaS~gg---D~~i~lf~~s~~~d~p 267 (312)
T KOG0645|consen 226 ----------------------------TDLSGMHSRALY-----DVPWD--NGVIASGGG---DDAIRLFKESDSPDEP 267 (312)
T ss_pred ----------------------------cCcchhcccceE-----eeeec--ccceEeccC---CCEEEEEEecCCCCCc
Confidence 111223445565 45555 457889888 9999999765 2 1
Q ss_pred ----eeEEEecCCCceEEEEEecC-CCeEEEEcCCCcEEEEecC
Q 008844 328 ----LVKILEGPKEALIDLAWHPV-HPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 328 ----~~~~l~~h~~~v~~l~~sp~-~~~l~s~s~dg~i~iW~~~ 366 (551)
+...-..|...|++++|.|. ..+|++++.||.|++|.+.
T Consensus 268 ~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 268 SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 12233468889999999995 6799999999999999874
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=258.59 Aligned_cols=367 Identities=19% Similarity=0.277 Sum_probs=258.7
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
+|.+||..+|+....+........|+|++-+++.-+||+|..||.|+||+..++...-++.+| ...|+++.|...|..
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngH--K~AVt~l~fd~~G~r 121 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGH--KAAVTTLKFDKIGTR 121 (888)
T ss_pred cEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeeccc--ccceEEEEEcccCce
Confidence 578999999987777766545568999999999999999999999999999988877777765 999999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeec-----------
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILP----------- 149 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~----------- 149 (551)
|++||.|+.|.+||+-...-...+.+|.. ++.+.|..+ ..++++++.|+.+++||+.+..+....
T Consensus 122 laSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~---~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 122 LASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNG---DSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred EeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCC---CeEEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999999987777788888764 334444332 236777777777777777654321100
Q ss_pred -------------------cccCCCC------------------------------------------------------
Q 008844 150 -------------------IAVPDVA------------------------------------------------------ 156 (551)
Q Consensus 150 -------------------~~~~~~~------------------------------------------------------ 156 (551)
+......
T Consensus 199 ~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E 278 (888)
T KOG0306|consen 199 LDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEE 278 (888)
T ss_pred EecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHH
Confidence 0000000
Q ss_pred -------------------------------------------------------CC-----------------------
Q 008844 157 -------------------------------------------------------NG----------------------- 158 (551)
Q Consensus 157 -------------------------------------------------------~~----------------------- 158 (551)
..
T Consensus 279 ~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 279 IAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS 358 (888)
T ss_pred HHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC
Confidence 00
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEee---------------------------
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALV--------------------------- 211 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~--------------------------- 211 (551)
..+........++|...|.+++++.+...+++|+ .+.|.||+..+.+++.++
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQ 437 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceE
Confidence 0000000011233444566677766655444443 456777776665544433
Q ss_pred -------------eccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcc--ccchh-hh-------hhhcc----CC
Q 008844 212 -------------PVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLK--NGLEA-LV-------DIEKG----IA 264 (551)
Q Consensus 212 -------------~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~--~~~~~-~~-------~~~~~----~~ 264 (551)
+ .|.+.|..++.+|+++.++|++.|.+|++||...-.. +..+. +. .+... ..
T Consensus 438 vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~ 516 (888)
T KOG0306|consen 438 VFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV 516 (888)
T ss_pred EEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence 3 6889999999999999999999999999999322111 11100 00 00000 00
Q ss_pred CC-----------CcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 265 EP-----------NGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 265 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
.+ +-+..+...+.+....+.+|.-+|. ++.+|||++.+++|+. |..|+||-++ |.+.+.+
T Consensus 517 Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~-----smDIS~DSklivTgSA---DKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 517 SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL-----SMDISPDSKLIVTGSA---DKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred cCCCcEEEEEeccCeEEEEEecceeeeeeeccccccee-----EEeccCCcCeEEeccC---CCceEEeccccchhhhhh
Confidence 11 1112233333444556677877777 8999999999999999 9999999999 9999999
Q ss_pred ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC-----------cce-eecCCcceece
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE-----------NWS-AFAPDFKELEE 383 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~-----------~~~-~~spd~~~l~~ 383 (551)
.+|...|.++.|.|...++.+||.|+.|+-||-...+ .|. +.+|+|..+..
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs 651 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVS 651 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEe
Confidence 9999999999999999999999999999999877654 333 78888876653
No 38
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=240.66 Aligned_cols=285 Identities=17% Similarity=0.295 Sum_probs=239.1
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc------cccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK------ECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~------~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
....+.|..|||||+||++|+.||.|.+|++.+|++.+.+... -+..+|.|++|+.|...|++|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 3467889999999999999999999999999999877665432 2478999999999999999999999999999
Q ss_pred cCCCeEEEEEE-cC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIV-LQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 96 ~~~~~~~~~~~-~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
+.+|.+++.+. .| ..+.++.|+.+++ .+++++.|.++++.-+..|+.... ..+|.
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~sfD~tvRiHGlKSGK~LKE--------------------frGHs 348 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSASFDQTVRIHGLKSGKCLKE--------------------FRGHS 348 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcc---hhhcccccceEEEeccccchhHHH--------------------hcCcc
Confidence 99999999986 33 4688999998765 699999999999999999886432 33455
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc-CccceEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCccc
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS-GAAVIKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~ 251 (551)
..|+.+.|+++|++++++++||+|++|+..+.+++.++... ...+|.++-.-|. ...+++|...++|.|.++.
T Consensus 349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q----- 423 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ----- 423 (508)
T ss_pred ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-----
Confidence 58999999999999999999999999999999998888643 3567888877774 5678889899999999821
Q ss_pred cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeE
Q 008844 252 GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVK 330 (551)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~ 330 (551)
+..++.+..-. -..-.+-++++||.|.|+.+.+. |+.+|.|.+. |.+-+
T Consensus 424 -------------------------GQvVrsfsSGk--REgGdFi~~~lSpkGewiYcigE---D~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 424 -------------------------GQVVRSFSSGK--REGGDFINAILSPKGEWIYCIGE---DGVLYCFSVLSGKLER 473 (508)
T ss_pred -------------------------ceEEeeeccCC--ccCCceEEEEecCCCcEEEEEcc---CcEEEEEEeecCceee
Confidence 22233332111 11122337899999999999999 9999999999 99999
Q ss_pred EEecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 331 ILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 331 ~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.+..|...|..++-||..+.||+-+.||.+++|.
T Consensus 474 tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999996
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=9.4e-32 Score=228.57 Aligned_cols=282 Identities=15% Similarity=0.227 Sum_probs=244.3
Q ss_pred cccceEEEEEEcC---CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC
Q 008844 21 LEHGVMKCIAFNR---RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 21 ~h~~~V~~l~fs~---dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~ 97 (551)
.|..+|..++||| +|-+|++++.||.-.+-+-+||..+.+|.+| .+.|.+.++..+....++++.|=+.+|||.-
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfegh--kgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH--KGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeecc--CcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 4889999999986 8999999999999999999999999999877 9999999999988889999999999999999
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
+|..+..+...+-+..++|+.+.. .+++++.+.-+++||++....... ....|+..|.
T Consensus 90 tgdelhsf~hkhivk~~af~~ds~---~lltgg~ekllrvfdln~p~App~-------------------E~~ghtg~Ir 147 (334)
T KOG0278|consen 90 TGDELHSFEHKHIVKAVAFSQDSN---YLLTGGQEKLLRVFDLNRPKAPPK-------------------EISGHTGGIR 147 (334)
T ss_pred hhhhhhhhhhhheeeeEEecccch---hhhccchHHHhhhhhccCCCCCch-------------------hhcCCCCcce
Confidence 999999999888888999988754 799999999999999988764322 2344566899
Q ss_pred EEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhh
Q 008844 178 AACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
.+.|....+.|++.+.+++|++||.+++..+..+ ....+|+++.++++|++|.++ ..+.|.+||
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL--~~~s~VtSlEvs~dG~ilTia-~gssV~Fwd------------- 211 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL--EFNSPVTSLEVSQDGRILTIA-YGSSVKFWD------------- 211 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEeccCcEEEEE--ecCCCCcceeeccCCCEEEEe-cCceeEEec-------------
Confidence 9999999999999999999999999999999998 567889999999999866554 778999999
Q ss_pred hhhccCCCCCcceeeeeccceeeeeeccc--ccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE-e
Q 008844 258 DIEKGIAEPNGIEKMKMVGSKCLALFREF--QDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL-E 333 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l-~ 333 (551)
...+..++.. ...|. +..++|+..++++|+. |..++.||.. |+.+..+ +
T Consensus 212 -------------------aksf~~lKs~k~P~nV~-----SASL~P~k~~fVaGge---d~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 212 -------------------AKSFGLLKSYKMPCNVE-----SASLHPKKEFFVAGGE---DFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred -------------------cccccceeeccCccccc-----cccccCCCceEEecCc---ceEEEEEeccCCceeeeccc
Confidence 2223333322 23333 7889999999999999 9999999999 8888875 8
Q ss_pred cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 334 GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 334 ~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+|.++|.++.|+|+|...++||.||+|+||.+..++
T Consensus 265 gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999999999999999999999999998665
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-31 Score=255.40 Aligned_cols=292 Identities=15% Similarity=0.179 Sum_probs=251.7
Q ss_pred eeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 16 ~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
.+....|...|.+++||.+...+++|+ .+.|+||+..+.++++++.. .-+.+..|.|.++++++|...|.+.+||
T Consensus 366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEecCCCceEEEeccCCceEEEE
Confidence 355566889999999999988888875 57899999999999999964 4789999999999999999999999999
Q ss_pred cCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce------eeeccccCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST------SILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
+.....+.++..|. .+..++..|++. .+++++.|.++++||+.--.. ..+.+. ...
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~---g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~--------------~~r 503 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNK---GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK--------------HTR 503 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCC---ceEEecCCcEEEEEeEEEEeccCcccceeeeec--------------cce
Confidence 99999888888776 477899999866 699999999999999742211 111110 001
Q ss_pred CCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCC
Q 008844 169 DGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~ 248 (551)
....+..|.|+.+||+|++|+++--|.+|+||-+.+.+....+. +|.-+|.|+.++||++.++|||.|.+|+||-+
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGL--- 579 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGL--- 579 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEecc---
Confidence 11222389999999999999999999999999999998866664 99999999999999999999999999999972
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY 327 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~ 327 (551)
.=+.|-+.+..|++.|. ++.|-|...++++++. |+.|+-||-. .+
T Consensus 580 --------------------------dFGDCHKS~fAHdDSvm-----~V~F~P~~~~FFt~gK---D~kvKqWDg~kFe 625 (888)
T KOG0306|consen 580 --------------------------DFGDCHKSFFAHDDSVM-----SVQFLPKTHLFFTCGK---DGKVKQWDGEKFE 625 (888)
T ss_pred --------------------------ccchhhhhhhcccCcee-----EEEEcccceeEEEecC---cceEEeechhhhh
Confidence 22778899999999998 8899999999999999 9999999999 99
Q ss_pred eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 328 LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 328 ~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.++.+.+|...|.+++.+|+|.+++|+|.|.+|++|....
T Consensus 626 ~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 626 EIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999999999999999764
No 41
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=7e-31 Score=229.94 Aligned_cols=295 Identities=18% Similarity=0.277 Sum_probs=235.5
Q ss_pred cccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC------------C------ceeeEeecccccccEEEEEecCCCC
Q 008844 19 EYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET------------R------GIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 19 ~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~------------~------~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
...|.+++.+.+||+||.++|+|+.|..|+|.|++. + -+++++-. |...|+++.|+|...
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--H~devn~l~FHPre~ 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--HVDEVNDLDFHPRET 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--ccCcccceeecchhh
Confidence 344889999999999999999999999999999862 1 23455544 599999999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCe---EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGE---KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVAN 157 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (551)
.|++++.|++|+++|+.... ..+.+....++.++.|+|.+. +++++.....+++||+.+-++.....
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe---fllvgTdHp~~rlYdv~T~Qcfvsan------- 255 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE---FLLVGTDHPTLRLYDVNTYQCFVSAN------- 255 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc---eEEEecCCCceeEEeccceeEeeecC-------
Confidence 99999999999999987543 233455567788999999876 78899999999999999987754321
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccC-ccceEEEEEeeCCCEEEEeeC
Q 008844 158 GIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG-AAVIKNIVFSRNGQYLLTNSN 236 (551)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~t~s~ 236 (551)
....|...|+++.+++.|++.++|+.||.|+|||--+++++.++...| ...|.+..|..+|+||++.+.
T Consensus 256 ----------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 256 ----------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred ----------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 223455589999999999999999999999999999999998887666 568999999999999999999
Q ss_pred CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCc
Q 008844 237 DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGE 316 (551)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~d 316 (551)
|.++++|.+ .+++++..+.+-...-....-+...|.....|++.-... .
T Consensus 326 DS~vkLWEi-----------------------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa--s 374 (430)
T KOG0640|consen 326 DSTVKLWEI-----------------------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA--S 374 (430)
T ss_pred cceeeeeee-----------------------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc--c
Confidence 999999992 224555554433111111111245678888888877653 5
Q ss_pred ceEEEEecC-CceeEE-EecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 317 HKIYIWDRA-GYLVKI-LEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 317 g~I~iwd~~-~~~~~~-l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+.+.-||.+ +..+.. --+|.+.+..+.-+|.++-+++|+.|-.+++|--.
T Consensus 375 ~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 375 NSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 779999998 443333 34799999999999999999999999999999744
No 42
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=2.4e-30 Score=241.12 Aligned_cols=295 Identities=22% Similarity=0.322 Sum_probs=224.5
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC----ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR----GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~----~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
..|...|+++++.|.|..|++|+.|.+|++||+... +..+.+... ....|.++.|++.|..|++.+.....+|+|
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~-E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC-ETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcc-cccccceeeecCCCCeEEEEecCcceeEEc
Confidence 336688999999999999999999999999999743 223333322 267899999999999999988889999999
Q ss_pred cCCCeEEEEE-E------------cCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC
Q 008844 96 VLKGEKITRI-V------------LQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 96 ~~~~~~~~~~-~------------~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 161 (551)
- .|..+..+ + +|. .+.+.+|+|... ..+++++.|+++++|++...+.....+...
T Consensus 243 R-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-------- 311 (641)
T KOG0772|consen 243 R-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--EEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-------- 311 (641)
T ss_pred c-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcc--cceEEecCCCcEEEEecCCchhheeEEeec--------
Confidence 4 45443332 2 222 366788999764 489999999999999998765332211111
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE--EEeeeccCcc--ceEEEEEeeCCCEEEEeeCC
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI--RALVPVSGAA--VIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~~~--~i~~l~~s~~g~~l~t~s~D 237 (551)
..+.....++.++|+++|++||+|+.||.|.+|+..+... ...+...|.. .|+||+||++|++|++-+.|
T Consensus 312 ------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 312 ------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred ------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 0112222789999999999999999999999999865543 3344446765 99999999999999999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC---
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK--- 314 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~--- 314 (551)
+++++||+... .+++....+.... ..-+.|+|||+.++|++|+...
T Consensus 386 ~tLKvWDLrq~----------------------------kkpL~~~tgL~t~---~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 386 DTLKVWDLRQF----------------------------KKPLNVRTGLPTP---FPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred Cceeeeecccc----------------------------ccchhhhcCCCcc---CCCCccccCCCceEEEecccccCCC
Confidence 99999994322 2333333333222 2223889999999999997632
Q ss_pred CcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEE
Q 008844 315 GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIW 363 (551)
Q Consensus 315 ~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW 363 (551)
..|.+++||.. ...+..+.-....|..+.|||.-+.|+.++.||+++|+
T Consensus 435 ~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 35789999998 88888888788899999999999999999999999985
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=1.5e-31 Score=242.88 Aligned_cols=280 Identities=22% Similarity=0.312 Sum_probs=231.7
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG--IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+. .++|+++.|.++++++++++.|+.+++|++...
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs--~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGS--LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhcc--CCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 77999999999998999999999999999998766 66777766 789999999999999999999999999999999
Q ss_pred eEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 100 EKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
+...++.+|.. +..+.|.-... .+++++.|.++++||+....+...++... .+..
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl~k~~C~kt~l~~S---------------------~cnD 307 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDLQKAYCSKTVLPGS---------------------QCND 307 (459)
T ss_pred hhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhhhhhheeccccccc---------------------cccc
Confidence 99999999875 55666665432 38999999999999999977654433322 3344
Q ss_pred EEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 179 ACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
++.+ ...+++|..|+.|++||+++..+.... +..+.|+++..+++|..|++++.|.++.++|+..
T Consensus 308 I~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt----------- 372 (459)
T KOG0288|consen 308 IVCS--ISDVISGHFDKKVRFWDIRSADKTRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT----------- 372 (459)
T ss_pred eEec--ceeeeecccccceEEEeccCCceeeEe--ecCcceeeEeeccCCeEEeeecCCCceeeeeccc-----------
Confidence 4444 557889999999999999999998888 4556999999999999999999999999999322
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKE 337 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~ 337 (551)
......+. -.+.-....|+.++|||++.|+++|+. ||.|+||++. |++...+.....
T Consensus 373 ------------------~eI~~~~s-A~g~k~asDwtrvvfSpd~~YvaAGS~---dgsv~iW~v~tgKlE~~l~~s~s 430 (459)
T KOG0288|consen 373 ------------------KEIRQTFS-AEGFKCASDWTRVVFSPDGSYVAAGSA---DGSVYIWSVFTGKLEKVLSLSTS 430 (459)
T ss_pred ------------------ccEEEEee-ccccccccccceeEECCCCceeeeccC---CCcEEEEEccCceEEEEeccCCC
Confidence 11111121 112223345789999999999999999 9999999999 999988887655
Q ss_pred c--eEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 338 A--LIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 338 ~--v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
. |++++|+|.|..|++++.++.+.+|.
T Consensus 431 ~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 431 NAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CcceEEEEEcCCCchhhcccCCcceEecC
Confidence 5 99999999999999999999999994
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=7.1e-31 Score=234.88 Aligned_cols=284 Identities=17% Similarity=0.245 Sum_probs=232.3
Q ss_pred CEEEEEeCCCeEEEEeccC--CceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-ee
Q 008844 36 TLLAAGCSDGSCVIWDFET--RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT-PL 112 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~ 112 (551)
.-|+.|.-.+..+..+.-- ..+.+.+.+ |..+|+.+-|+|+-..+++++.|++|++||..+|++...+++|.. +.
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g--~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~ 154 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQKLAG--HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVF 154 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhhhhc--cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccccee
Confidence 3444444444444332211 123344444 589999999999999999999999999999999999999988865 66
Q ss_pred EEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe
Q 008844 113 QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN 192 (551)
Q Consensus 113 ~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~ 192 (551)
.+.|+..+ .++++++.|-.+.+||..+..... ....+|...|.+++|-|.|.+|++++
T Consensus 155 di~~~a~G---k~l~tcSsDl~~~LWd~~~~~~c~-------------------ks~~gh~h~vS~V~f~P~gd~ilS~s 212 (406)
T KOG0295|consen 155 DISFDASG---KYLATCSSDLSAKLWDFDTFFRCI-------------------KSLIGHEHGVSSVFFLPLGDHILSCS 212 (406)
T ss_pred EEEEecCc---cEEEecCCccchhheeHHHHHHHH-------------------HHhcCcccceeeEEEEecCCeeeecc
Confidence 78888766 488999999999999988742211 11233445899999999999999999
Q ss_pred cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceee
Q 008844 193 SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKM 272 (551)
Q Consensus 193 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (551)
.|.+|++|++.++.++.+++ +|...|..++.+.||.++++++.|.+|++|-
T Consensus 213 rD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As~s~dqtl~vW~---------------------------- 263 (406)
T KOG0295|consen 213 RDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIASCSNDQTLRVWV---------------------------- 263 (406)
T ss_pred cccceeEEecccceeEEecc-CchHhEEEEEecCCeeEEEecCCCceEEEEE----------------------------
Confidence 99999999999999999998 8899999999999999999999999999997
Q ss_pred eeccceeeeeecccccccceeeeeeeEEcC----------CCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEE
Q 008844 273 KMVGSKCLALFREFQDSITKMHWKAPCFSG----------DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALID 341 (551)
Q Consensus 273 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~----------dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~ 341 (551)
..+..|...++.|+.++..+.|....+.| .+.++++++. |++|++||+. |.++.+|.+|...|..
T Consensus 264 -~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr---DktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 264 -VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR---DKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred -eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc---cceEEEEeccCCeEEEEEecccceeee
Confidence 23366778899999999866665444443 2359999999 9999999999 9999999999999999
Q ss_pred EEEecCCCeEEEEcCCCcEEEEecCCCCcceeecC
Q 008844 342 LAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFAP 376 (551)
Q Consensus 342 l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~sp 376 (551)
++|+|.|+||+|+..|+++++||+.+.++...+.+
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 99999999999999999999999999887655443
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=247.53 Aligned_cols=243 Identities=18% Similarity=0.291 Sum_probs=220.2
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
++..|.|+.|+|...+++++-.+|.|.||+.++...++.+... .-||.+..|-..-+++++|+.|..|+||+..+++.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~--~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS--EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec--ccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence 7789999999999999999999999999999999999999876 88999999999999999999999999999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
+..+..|.. -|.+++.
T Consensus 90 V~~FeAH~D----------------------------------------------------------------yIR~iav 105 (794)
T KOG0276|consen 90 VKTFEAHSD----------------------------------------------------------------YIRSIAV 105 (794)
T ss_pred eEEeecccc----------------------------------------------------------------ceeeeee
Confidence 999987764 7888889
Q ss_pred eeCCCEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 182 NKYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 182 s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
+|...++++++.|-.|++||....=. .+++. +|...|.+++|+|. .+.+++++-|++|+||.+-
T Consensus 106 HPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg------------- 171 (794)
T KOG0276|consen 106 HPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG------------- 171 (794)
T ss_pred cCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEEEEcC-------------
Confidence 99999999999999999999987644 55555 99999999999994 5789999999999999922
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC--CCCEEEEeeccCCcceEEEEecC-CceeEEEecCC
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG--DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK 336 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~--dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~ 336 (551)
...+..++.+|...|+ ++.|-+ |..||++|+. |..|+|||.+ ..++++|.||.
T Consensus 172 ----------------s~~~nfTl~gHekGVN-----~Vdyy~~gdkpylIsgaD---D~tiKvWDyQtk~CV~TLeGHt 227 (794)
T KOG0276|consen 172 ----------------SPHPNFTLEGHEKGVN-----CVDYYTGGDKPYLISGAD---DLTIKVWDYQTKSCVQTLEGHT 227 (794)
T ss_pred ----------------CCCCceeeeccccCcc-----eEEeccCCCcceEEecCC---CceEEEeecchHHHHHHhhccc
Confidence 2455778889999998 888876 4469999999 9999999999 99999999999
Q ss_pred CceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 337 EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 337 ~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
..|..+.|||.-++|+|||.||+|+||.-.+-
T Consensus 228 ~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred ccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 99999999999999999999999999998764
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.3e-29 Score=219.32 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=232.7
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC--CCCEEEEEcCCCe
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA--DKSLTLWDVLKGE 100 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~ 100 (551)
.+.|+++.|+++|.+|++++.|.+|+|||..++..++++..+ ...|..++|....+.++.++. |.+|+..++.+.+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk--kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK--KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc--cccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 578999999999999999999999999999999999999776 788999999887777777776 8999999999999
Q ss_pred EEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 101 KITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.++.+.+|.. +..+..+|.+. .+++++.|.++++||++..+++.+.... ....+
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d---~FlS~S~D~tvrLWDlR~~~cqg~l~~~----------------------~~pi~ 146 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDD---TFLSSSLDKTVRLWDLRVKKCQGLLNLS----------------------GRPIA 146 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCC---eEEecccCCeEEeeEecCCCCceEEecC----------------------CCcce
Confidence 9999999975 77899999864 7999999999999999977655432221 44578
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCc--EEEeeec--cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQ--IRALVPV--SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~--~~~~~~~--~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
+|.|.|-++|++.....|++||++.-. +..++.. ......+.|.|+|+|++|+.++..+.+++.|..
T Consensus 147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf--------- 217 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF--------- 217 (311)
T ss_pred eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc---------
Confidence 999999999999988899999999752 3333332 346788999999999999999999999999922
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG 334 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~ 334 (551)
.+..+..+..+...-. .+. ..+|+||+++|++|+. ||+|++|++. |..+..+.+
T Consensus 218 --------------------~G~~~~tfs~~~~~~~-~~~-~a~ftPds~Fvl~gs~---dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 218 --------------------DGTVKSTFSGYPNAGN-LPL-SATFTPDSKFVLSGSD---DGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred --------------------CCcEeeeEeeccCCCC-cce-eEEECCCCcEEEEecC---CCcEEEEEcCCCcEeeEecC
Confidence 2333444444433221 111 7799999999999999 9999999999 999999999
Q ss_pred -CCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 335 -PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 335 -h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+..++.++.|+|...+++|++ ..+.+|-...
T Consensus 273 ~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 273 PNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred CCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 688999999999988888775 5788887653
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-30 Score=254.58 Aligned_cols=275 Identities=12% Similarity=0.234 Sum_probs=225.4
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
.+..|..++|+|...+++++-..|.|.+||..-+.++..|..| .++|..++|+|.+.+++||+.|..|+||+..+.++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeH--dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEH--DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhcc--CCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 3477999999999999999999999999999999999999766 99999999999999999999999999999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
+.++.+|-. .|..+.|
T Consensus 86 lftL~GHlD----------------------------------------------------------------YVRt~~F 101 (1202)
T KOG0292|consen 86 LFTLLGHLD----------------------------------------------------------------YVRTVFF 101 (1202)
T ss_pred hhhhccccc----------------------------------------------------------------eeEEeec
Confidence 888887764 6777788
Q ss_pred eeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhc
Q 008844 182 NKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEK 261 (551)
Q Consensus 182 s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (551)
++.-.+|++++.|.+|+||+..+++++..+. +|...|.|.+|+|....++++|-|.+|||||+..-........ .+..
T Consensus 102 HheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~ 179 (1202)
T KOG0292|consen 102 HHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG-SLED 179 (1202)
T ss_pred cCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC-Cchh
Confidence 8888899999999999999999999999997 9999999999999999999999999999999422111111000 0000
Q ss_pred cCCCCCc-ceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---CceeEEEecCCC
Q 008844 262 GIAEPNG-IEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GYLVKILEGPKE 337 (551)
Q Consensus 262 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~~~~~l~~h~~ 337 (551)
....... ...+-.........+.+|...|+ -++|.|.-..|++|+. |..|++|... .-.+.+..||..
T Consensus 180 ~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN-----waAfhpTlpliVSG~D---DRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 180 QMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN-----WAAFHPTLPLIVSGAD---DRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred hhhccccchhhcCCcCeeeeeeecccccccc-----eEEecCCcceEEecCC---cceeeEEEeccccceeehhhhcccC
Confidence 0000000 00000111223456788988888 8899999999999999 9999999998 345677899999
Q ss_pred ceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 338 ALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
.|.++-|||...+|+|.|.|++|+|||+.......
T Consensus 252 nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 252 NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred CcceEEecCccceeEecCCCccEEEEeccccccee
Confidence 99999999999999999999999999998765443
No 48
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-29 Score=251.48 Aligned_cols=244 Identities=21% Similarity=0.347 Sum_probs=198.9
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC--------------------------------C-------------
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET--------------------------------R------------- 55 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~--------------------------------~------------- 55 (551)
.|.+.|.|+.||+||+|||+|+.||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4889999999999999999999999999998754 0
Q ss_pred ---------------ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCC
Q 008844 56 ---------------GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGS 120 (551)
Q Consensus 56 ---------------~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~ 120 (551)
++++.+. +|.+.|..|+||.+ .+|++++.|++|+||++....++..|....-+++++|+|..
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~--GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFK--GHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhh--ccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccC
Confidence 0011122 57999999999975 58999999999999999999999999999999999999965
Q ss_pred CCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEE
Q 008844 121 STPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVI 200 (551)
Q Consensus 121 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~ 200 (551)
..++++|+.|+.++||++...+...+.-.. ..|+++||.|+|++.++|+.+|.+++|
T Consensus 422 --DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---------------------~lITAvcy~PdGk~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 422 --DRYFISGSLDGKVRLWSISDKKVVDWNDLR---------------------DLITAVCYSPDGKGAVIGTFNGYCRFY 478 (712)
T ss_pred --CCcEeecccccceEEeecCcCeeEeehhhh---------------------hhheeEEeccCCceEEEEEeccEEEEE
Confidence 459999999999999999988765442111 279999999999999999999999999
Q ss_pred ECCCCcEEEeeeccC-------ccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceee
Q 008844 201 DHKSNQIRALVPVSG-------AAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKM 272 (551)
Q Consensus 201 d~~~~~~~~~~~~~~-------~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (551)
+....+......... ...|+++.|.|.. ..|++.+.|..|||||..
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~-------------------------- 532 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR-------------------------- 532 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEecc--------------------------
Confidence 999887765543211 2379999999754 357888899999999921
Q ss_pred eeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 273 KMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 273 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
....+..++++...-..+ ...|+.||++|++++. |..||||+..
T Consensus 533 ---~~~lv~KfKG~~n~~SQ~---~Asfs~Dgk~IVs~se---Ds~VYiW~~~ 576 (712)
T KOG0283|consen 533 ---DKDLVHKFKGFRNTSSQI---SASFSSDGKHIVSASE---DSWVYIWKND 576 (712)
T ss_pred ---chhhhhhhcccccCCcce---eeeEccCCCEEEEeec---CceEEEEeCC
Confidence 123345556555444333 6789999999999998 9999999986
No 49
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=6.9e-29 Score=222.33 Aligned_cols=274 Identities=16% Similarity=0.217 Sum_probs=222.5
Q ss_pred cccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEE
Q 008844 4 PIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRIL 83 (551)
Q Consensus 4 ~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~ 83 (551)
.||+..+|+++-.+.. |...|+|+.||.+|.|||||..+|.|+||...++.....+... ...|.-|.|+|.+..|+
T Consensus 89 flW~~~~ge~~~eltg--HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e--~~dieWl~WHp~a~ill 164 (399)
T KOG0296|consen 89 FLWDISTGEFAGELTG--HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE--VEDIEWLKWHPRAHILL 164 (399)
T ss_pred EEEEccCCcceeEecC--CCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc--cCceEEEEecccccEEE
Confidence 5899999998777766 9999999999999999999999999999999999988888644 68899999999999999
Q ss_pred EEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccC---------
Q 008844 84 VSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVP--------- 153 (551)
Q Consensus 84 s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--------- 153 (551)
.|+.||.|.+|.+.++...+.+.+|. +..+-.|.|+++ .++++..+++|++|++.+++.........
T Consensus 165 AG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK---r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~ 241 (399)
T KOG0296|consen 165 AGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK---RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL 241 (399)
T ss_pred eecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc---eEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence 99999999999999988888888876 467888999976 68999999999999999997654322100
Q ss_pred -CCCCCCCCCC-------------------C--CCCCCCCCCCC---ceEEEEeeCCCEEEEEecCceEEEEECCCCcEE
Q 008844 154 -DVANGIAPSS-------------------R--NKYSDGTPPFT---PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIR 208 (551)
Q Consensus 154 -~~~~~~~~~~-------------------~--~~~~~~~~~~~---i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~ 208 (551)
.......... . .......+... |-++.++..-.+.|+|+.||+|.|||+...+++
T Consensus 242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence 0000000000 0 00001111222 334444445578899999999999999999988
Q ss_pred EeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc
Q 008844 209 ALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD 288 (551)
Q Consensus 209 ~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (551)
..+ .|...|+.+.|.+ ..+|++++.+|.|++|| .+.+.++..+.+|+.
T Consensus 322 ~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD-----------------------------aRtG~l~~~y~GH~~ 369 (399)
T KOG0296|consen 322 HIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWD-----------------------------ARTGQLKFTYTGHQM 369 (399)
T ss_pred eec--cCCCceEEEEEcC-cchheeeccCceEEeee-----------------------------ccccceEEEEecCch
Confidence 888 7899999999998 78999999999999999 455888999999999
Q ss_pred ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEec
Q 008844 289 SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDR 324 (551)
Q Consensus 289 ~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~ 324 (551)
.|. .++++|++++|++++. |+..+||+.
T Consensus 370 ~Il-----~f~ls~~~~~vvT~s~---D~~a~VF~v 397 (399)
T KOG0296|consen 370 GIL-----DFALSPQKRLVVTVSD---DNTALVFEV 397 (399)
T ss_pred hee-----EEEEcCCCcEEEEecC---CCeEEEEec
Confidence 998 8899999999999999 999999976
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.1e-29 Score=223.67 Aligned_cols=308 Identities=16% Similarity=0.245 Sum_probs=237.2
Q ss_pred ccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCC---CEEEEEeCCC
Q 008844 13 FPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG---HRILVSAADK 89 (551)
Q Consensus 13 ~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g---~~l~s~s~dg 89 (551)
.|+.+..+.|..-|.++... +.+|++|++||.++|||.. |+...++.+| .++|.+++|.-.. ..|++++.|.
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Gh--t~~ik~v~~v~~n~~~~~fvsas~Dq 169 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGH--TGPIKSVAWVIKNSSSCLFVSASMDQ 169 (423)
T ss_pred CCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecC--CcceeeeEEEecCCccceEEEecCCc
Confidence 34556666777778887776 7899999999999999986 8888888876 9999999885433 3599999999
Q ss_pred CEEEEEcCCCeEE----EEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccC-----CCCCCC
Q 008844 90 SLTLWDVLKGEKI----TRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVP-----DVANGI 159 (551)
Q Consensus 90 ~i~vwd~~~~~~~----~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~~~~~ 159 (551)
++++|-++.+... ....+|.. +.++...+++. .+++++.|..+.+|+........+..... ......
T Consensus 170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt---r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT---RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC---eEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 9999998877543 22335554 56777777654 89999999999999943322111100000 000111
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCe
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRT 239 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~ 239 (551)
...........+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+ .....++++..+|..++|++|+.|..
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL--TTNKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred ccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee--ecCcceeEeecccccceeeecCCCCc
Confidence 111222334567888999999998 667999999999999999999998888 67889999999999999999999999
Q ss_pred EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCE-EEEeeccCCcce
Q 008844 240 IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEW-VIAGSASKGEHK 318 (551)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~-l~~gs~~~~dg~ 318 (551)
||+||.+.+. +......+.+|...|. ++.|+|...| |++|+. |++
T Consensus 324 irl~DPR~~~--------------------------gs~v~~s~~gH~nwVs-----svkwsp~~~~~~~S~S~---D~t 369 (423)
T KOG0313|consen 324 IRLWDPRTGD--------------------------GSVVSQSLIGHKNWVS-----SVKWSPTNEFQLVSGSY---DNT 369 (423)
T ss_pred eeecCCCCCC--------------------------CceeEEeeecchhhhh-----heecCCCCceEEEEEec---CCe
Confidence 9999943321 2334567889999998 8899996654 677888 999
Q ss_pred EEEEecC--CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 319 IYIWDRA--GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 319 I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+++||++ ..++..+.+|...|.++.|. .+.+|++||.|.+|+|+.-.
T Consensus 370 ~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 370 VKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999 44999999999999999995 45599999999999998754
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=236.32 Aligned_cols=259 Identities=14% Similarity=0.196 Sum_probs=217.1
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
+.||+..+-.+.-++.. |..+|+++.|+++|.++++|..+|.|++|+.. ...++.+..| |...|++++|+|+...+
T Consensus 120 FtLWNg~~fnFEtilQa--HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ah-h~eaIRdlafSpnDskF 195 (464)
T KOG0284|consen 120 FTLWNGTSFNFETILQA--HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAH-HAEAIRDLAFSPNDSKF 195 (464)
T ss_pred EEEecCceeeHHHHhhh--hcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHh-hhhhhheeccCCCCcee
Confidence 35677655555444433 89999999999999999999999999999986 4445566655 57999999999999999
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 161 (551)
++++.||+|+|||....+....+.+|. .+.++.|+|.- .++++++.|..|.+||.+++.+...
T Consensus 196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k---gLiasgskDnlVKlWDprSg~cl~t------------- 259 (464)
T KOG0284|consen 196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK---GLIASGSKDNLVKLWDPRSGSCLAT------------- 259 (464)
T ss_pred EEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc---ceeEEccCCceeEeecCCCcchhhh-------------
Confidence 999999999999999988888888876 58899999973 3899999999999999999987643
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeC-CCEEEEeeCCCeE
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN-GQYLLTNSNDRTI 240 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~t~s~Dg~i 240 (551)
...|+..|..+.|++++++|++++.|..+++||+++.+.+..+. +|...|+++.|+|- ..+|.+|+.||.|
T Consensus 260 -------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 260 -------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred -------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCce
Confidence 23455589999999999999999999999999999888888776 89999999999995 4578889999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
..|.+... ......-..|...|. +++|.|-|..|++|+. |.+++
T Consensus 332 vh~~v~~~----------------------------~p~~~i~~AHd~~iw-----sl~~hPlGhil~tgsn---d~t~r 375 (464)
T KOG0284|consen 332 VHWVVGLE----------------------------EPLGEIPPAHDGEIW-----SLAYHPLGHILATGSN---DRTVR 375 (464)
T ss_pred EEEecccc----------------------------ccccCCCccccccee-----eeeccccceeEeecCC---Cccee
Confidence 99983211 122334456777787 8999999999999999 99999
Q ss_pred EEecC
Q 008844 321 IWDRA 325 (551)
Q Consensus 321 iwd~~ 325 (551)
+|...
T Consensus 376 fw~r~ 380 (464)
T KOG0284|consen 376 FWTRN 380 (464)
T ss_pred eeccC
Confidence 99876
No 52
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.9e-29 Score=241.33 Aligned_cols=260 Identities=17% Similarity=0.247 Sum_probs=215.2
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
+|.+|+..++........ +...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.++ |...|-+++|. +..
T Consensus 198 ~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-h~~rvg~laW~--~~~ 272 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-HASRVGSLAWN--SSV 272 (484)
T ss_pred eEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-cCceeEEEecc--Cce
Confidence 478999999985554443 3788999999999999999999999999999999999999873 59999999998 678
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEE-EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITR-IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
+.+|+.++.|..+|++..+.... +.
T Consensus 273 lssGsr~~~I~~~dvR~~~~~~~~~~------------------------------------------------------ 298 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQHVVSTLQ------------------------------------------------------ 298 (484)
T ss_pred EEEecCCCcEEEEEEecchhhhhhhh------------------------------------------------------
Confidence 99999999999999987654333 22
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeC-CCEEEEee--CC
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN-GQYLLTNS--ND 237 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~t~s--~D 237 (551)
.|...|+.+.|++++.++|+|+.|+.+.|||.....+...+. .|...|..++|+|- ..+||+|+ .|
T Consensus 299 ----------~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 299 ----------GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred ----------cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcc
Confidence 233389999999999999999999999999997777766665 89999999999995 55788875 59
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
++|++||+. ++..+... -+..+++.+.|++..+-|+++.... ++
T Consensus 368 ~~i~fwn~~-----------------------------~g~~i~~v------dtgsQVcsL~Wsk~~kEi~sthG~s-~n 411 (484)
T KOG0305|consen 368 RCIKFWNTN-----------------------------TGARIDSV------DTGSQVCSLIWSKKYKELLSTHGYS-EN 411 (484)
T ss_pred cEEEEEEcC-----------------------------CCcEeccc------ccCCceeeEEEcCCCCEEEEecCCC-CC
Confidence 999999932 12222222 2334455899999887666654433 67
Q ss_pred eEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 318 KIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 318 ~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.|.||+.. .+++..+.+|...|..++++|++..|++++.|.++++|++-.
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 99999999 899999999999999999999999999999999999999865
No 53
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=7.2e-29 Score=221.36 Aligned_cols=249 Identities=15% Similarity=0.203 Sum_probs=217.4
Q ss_pred eeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcE
Q 008844 58 AKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPM 136 (551)
Q Consensus 58 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~ 136 (551)
.+.+.+ |.+.|.|+++-|.+.+|++|+.|++|+|||+.+|++..++.++- .+..+++++.. .++++++.++.+.
T Consensus 144 ~rVi~g--HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH---pYlFs~gedk~VK 218 (460)
T KOG0285|consen 144 YRVISG--HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH---PYLFSAGEDKQVK 218 (460)
T ss_pred hhhhhh--ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC---ceEEEecCCCeeE
Confidence 344444 59999999999999999999999999999999999999998775 46678888764 4899999999999
Q ss_pred EEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCc
Q 008844 137 IVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGA 216 (551)
Q Consensus 137 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 216 (551)
.||+...+.+.... +|-..|.|++.+|.-..|++|+.|.+++|||+++...+..+. +|.
T Consensus 219 CwDLe~nkvIR~Yh--------------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~ 277 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYH--------------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHT 277 (460)
T ss_pred EEechhhhhHHHhc--------------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCC
Confidence 99999887654322 233389999999999999999999999999999999999887 899
Q ss_pred cceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 217 AVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 217 ~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
.+|..+.+.|-...+++|+.|++|++||+ ..++.+..+..|...+.
T Consensus 278 ~~V~~V~~~~~dpqvit~S~D~tvrlWDl-----------------------------~agkt~~tlt~hkksvr----- 323 (460)
T KOG0285|consen 278 NPVASVMCQPTDPQVITGSHDSTVRLWDL-----------------------------RAGKTMITLTHHKKSVR----- 323 (460)
T ss_pred CcceeEEeecCCCceEEecCCceEEEeee-----------------------------ccCceeEeeecccceee-----
Confidence 99999999998888999999999999992 33666778888888887
Q ss_pred eeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 297 APCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
+++..|....+|+++. ..|+-|++. |..+..+.+|..-|++++...|+ ++++|+..|.+.+||..++-+.
T Consensus 324 al~lhP~e~~fASas~----dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~ny 394 (460)
T KOG0285|consen 324 ALCLHPKENLFASASP----DNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNY 394 (460)
T ss_pred EEecCCchhhhhccCC----ccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccc
Confidence 8999999999999987 469999999 99999999999999999998776 7889999999999999887544
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.1e-28 Score=245.50 Aligned_cols=262 Identities=18% Similarity=0.263 Sum_probs=214.2
Q ss_pred ccccccCCCC--ccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEec-cCCceeeEeecccccccEEEEEecCCC
Q 008844 3 APIIDPLQGD--FPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDF-ETRGIAKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 3 l~lwd~~~~~--~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~-~~~~~~~~~~~~~h~~~V~~l~~s~~g 79 (551)
+.+|+..... ....+ ..|...|++++|+|+|++|++|+.|++|+|||+ ..+..++++.+| ...|++++|+|+|
T Consensus 183 i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH--~~~v~~~~f~p~g 258 (456)
T KOG0266|consen 183 IRIWKLEGIKSNLLREL--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH--STYVTSVAFSPDG 258 (456)
T ss_pred EEEeecccccchhhccc--cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC--CCceEEEEecCCC
Confidence 5678876555 33343 348899999999999999999999999999999 556888999866 9999999999999
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee--eeccccCCCC
Q 008844 80 HRILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS--ILPIAVPDVA 156 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~~ 156 (551)
+++++|+.|++|+|||+++++++..+..|.. +..+.|.+++. ++++++.|+.+++||+.++... .....
T Consensus 259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~---~l~s~s~d~~i~vwd~~~~~~~~~~~~~~----- 330 (456)
T KOG0266|consen 259 NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN---LLVSASYDGTIRVWDLETGSKLCLKLLSG----- 330 (456)
T ss_pred CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC---EEEEcCCCccEEEEECCCCceeeeecccC-----
Confidence 9999999999999999999999999999874 67788888754 7888899999999999999854 11100
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCcc---ceEEEEEeeCCCEEEE
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAA---VIKNIVFSRNGQYLLT 233 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---~i~~l~~s~~g~~l~t 233 (551)
..... .+++++|+|++.+|++++.|+.+++||+..+.....+. .|.. .+.+..+++.+.++++
T Consensus 331 ------------~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 331 ------------AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred ------------CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEE
Confidence 11111 58999999999999999999999999999999988876 4443 4555566789999999
Q ss_pred eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc-ccccceeeeeeeEEcCCCCEEEEeec
Q 008844 234 NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF-QDSITKMHWKAPCFSGDGEWVIAGSA 312 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~s~dg~~l~~gs~ 312 (551)
|+.|+.|.+|++. ....+..+.+| ...+. .+.++|...++++++.
T Consensus 397 g~~d~~v~~~~~~-----------------------------s~~~~~~l~~h~~~~~~-----~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 397 GSEDGSVYVWDSS-----------------------------SGGILQRLEGHSKAAVS-----DLSSHPTENLIASSSF 442 (456)
T ss_pred EeCCceEEEEeCC-----------------------------ccchhhhhcCCCCCcee-----ccccCCCcCeeeecCc
Confidence 9999999999921 23345566667 55555 7899999999999985
Q ss_pred cCCcceEEEEecC
Q 008844 313 SKGEHKIYIWDRA 325 (551)
Q Consensus 313 ~~~dg~I~iwd~~ 325 (551)
.. |+.|++|...
T Consensus 443 ~~-d~~~~~w~~~ 454 (456)
T KOG0266|consen 443 EG-DGLIRLWKYD 454 (456)
T ss_pred CC-CceEEEecCC
Confidence 43 8999999764
No 55
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9.8e-28 Score=235.93 Aligned_cols=339 Identities=16% Similarity=0.254 Sum_probs=257.2
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
++.||+..+++...++.. +...|+++.=+|--..+|.|..+|+|.|+++..++.+.+|+.. .+.|++++|..||+.
T Consensus 183 ~lql~Nvrt~K~v~~f~~--~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d--~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 183 RLQLWNVRTGKVVYTFQE--FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD--WGRVTSLSFRTDGNP 258 (910)
T ss_pred cEEEEEeccCcEEEEecc--cccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc--ccceeEEEeccCCCe
Confidence 478999999988877776 4488999999999999999999999999999999999999754 599999999999875
Q ss_pred E-EEEeCCCCEEEEEcCCCeEEEEEE-cC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce--eeecc------
Q 008844 82 I-LVSAADKSLTLWDVLKGEKITRIV-LQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST--SILPI------ 150 (551)
Q Consensus 82 l-~s~s~dg~i~vwd~~~~~~~~~~~-~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~------ 150 (551)
+ ++|+..|.+.+||++..+.+..+. .| ..+..+.|.|.. .++++.+.|+.+++|-..++.. ..+..
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e---pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE---PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC---ceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 5 555667999999999888777766 34 456677777763 3778888888877764442211 00000
Q ss_pred ----------------cc-CC----------------CCC----------CCC------CCC------------------
Q 008844 151 ----------------AV-PD----------------VAN----------GIA------PSS------------------ 163 (551)
Q Consensus 151 ----------------~~-~~----------------~~~----------~~~------~~~------------------ 163 (551)
.. .+ ... ... .++
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 00 00 000 000 000
Q ss_pred --------------CCC---------CCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEee--eccCccc
Q 008844 164 --------------RNK---------YSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALV--PVSGAAV 218 (551)
Q Consensus 164 --------------~~~---------~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~~~~~ 218 (551)
+.. .........+++++.+++|++.+.|++.|.|-+|++++|-....+ ...|..+
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence 000 000001236889999999999999999999999999999888777 2478999
Q ss_pred eEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 219 IKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 219 i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
|++++...-++.+++++.+|.+.+|+.- . ...+..+ .....++ .+
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~-~----------------------------k~l~~~l-~l~~~~~-----~i 540 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFK-K----------------------------KVLKKSL-RLGSSIT-----GI 540 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecC-C----------------------------cceeeee-ccCCCcc-----ee
Confidence 9999999989999999999999999921 1 1111111 1222233 66
Q ss_pred EEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc------
Q 008844 299 CFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW------ 371 (551)
Q Consensus 299 ~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~------ 371 (551)
.++.....++.+.. +-.|+++|.. .+.++.+.||.+.|++++|||||++|++++.|++|++||+.++...
T Consensus 541 v~hr~s~l~a~~~d---df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 541 VYHRVSDLLAIALD---DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred eeeehhhhhhhhcC---ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 67777788888888 8999999999 8899999999999999999999999999999999999999987643
Q ss_pred -----eeecCCcceeceec
Q 008844 372 -----SAFAPDFKELEENE 385 (551)
Q Consensus 372 -----~~~spd~~~l~~~~ 385 (551)
..|+|.|+.|+...
T Consensus 618 ~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred CcceeeEECCCCCEEEEEE
Confidence 27999999998654
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-28 Score=242.12 Aligned_cols=291 Identities=15% Similarity=0.249 Sum_probs=233.5
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
+.+||-.-+.+...+.. |.|+|..++|+|.+.++++|+.|..|+||++.+.+++.++.+| -.-|..+.|++.-.+|
T Consensus 33 IQlWDYRM~tli~rFde--HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH--lDYVRt~~FHheyPWI 108 (1202)
T KOG0292|consen 33 IQLWDYRMGTLIDRFDE--HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH--LDYVRTVFFHHEYPWI 108 (1202)
T ss_pred eeeehhhhhhHHhhhhc--cCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc--cceeEEeeccCCCceE
Confidence 67899888877777766 8999999999999999999999999999999999999999876 9999999999999999
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 161 (551)
+|+|.|.+|+||++++++++..+.+|.. +.++.|+|... ++++++.|.+|++||+..-.....
T Consensus 109 lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---lIVSaSLDQTVRVWDisGLRkk~~------------- 172 (1202)
T KOG0292|consen 109 LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---LIVSASLDQTVRVWDISGLRKKNK------------- 172 (1202)
T ss_pred EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---eEEEecccceEEEEeecchhccCC-------------
Confidence 9999999999999999999999999875 77888999644 789999999999999876543211
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEE---EEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLV---YVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR 238 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l---~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg 238 (551)
...++.=...+..+ +.|..|- .+..+-.+|...|+-++|+|.-.+|++|+.|+
T Consensus 173 -------------~pg~~e~~~~~~~~~~dLfg~~Da-----------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 173 -------------APGSLEDQMRGQQGNSDLFGQTDA-----------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred -------------CCCCchhhhhccccchhhcCCcCe-----------eeeeeecccccccceEEecCCcceEEecCCcc
Confidence 00011000111111 1122121 22233338999999999999999999999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
.|++|.. .....-.+.+.++|...|. ++-|.|...+|++.+. |+.
T Consensus 229 qVKlWrm---------------------------netKaWEvDtcrgH~nnVs-----svlfhp~q~lIlSnsE---Dks 273 (1202)
T KOG0292|consen 229 QVKLWRM---------------------------NETKAWEVDTCRGHYNNVS-----SVLFHPHQDLILSNSE---DKS 273 (1202)
T ss_pred eeeEEEe---------------------------ccccceeehhhhcccCCcc-----eEEecCccceeEecCC---Ccc
Confidence 9999981 1122334667889999998 8999999999999999 999
Q ss_pred EEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCccee
Q 008844 319 IYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSA 373 (551)
Q Consensus 319 I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~ 373 (551)
|+|||+. ...+..++...+....++-||..+++|+|- |+-+.||.++......+
T Consensus 274 irVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~ 328 (1202)
T KOG0292|consen 274 IRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYA 328 (1202)
T ss_pred EEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEE
Confidence 9999999 888999987788999999999999887665 77788888876544333
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.7e-28 Score=221.44 Aligned_cols=282 Identities=20% Similarity=0.274 Sum_probs=236.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
..|+++...|....+++|+.|..+.++|...++.+.++.|| ...|+.+.|+|+...+++++.|..|+||.+.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh--~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~ 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGH--TKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCc--ceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence 56888888888789999999999999999999999999877 9999999999999999999999999999987766655
Q ss_pred EEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q 008844 104 RIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN 182 (551)
Q Consensus 104 ~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 182 (551)
....|. ++..+..+|.+. ++++++.++...+.|++++........-. ....+++++|+
T Consensus 298 ~~~~h~~~V~~ls~h~tge---YllsAs~d~~w~Fsd~~~g~~lt~vs~~~------------------s~v~~ts~~fH 356 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGE---YLLSASNDGTWAFSDISSGSQLTVVSDET------------------SDVEYTSAAFH 356 (506)
T ss_pred ccccccccceeeeeccCCc---EEEEecCCceEEEEEccCCcEEEEEeecc------------------ccceeEEeeEc
Confidence 555554 578899999866 89999999999999999998765433211 11178999999
Q ss_pred eCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhcc
Q 008844 183 KYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKG 262 (551)
Q Consensus 183 ~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (551)
|||.+|.+|+.||.|+|||+.++..+..++ +|.++|..|+|+.+|.+|++++.|+.|++||++.
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRK--------------- 420 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRK--------------- 420 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehh---------------
Confidence 999999999999999999999999999998 7999999999999999999999999999999321
Q ss_pred CCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---CceeEEEecCCCce
Q 008844 263 IAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GYLVKILEGPKEAL 339 (551)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~~~~~l~~h~~~v 339 (551)
+..++.+...-. ...++++|.+.|.||+.++. +-.||+++-. ...+..+..|.+..
T Consensus 421 -----------------l~n~kt~~l~~~-~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~~k~W~~~~~~~~~sg~s 479 (506)
T KOG0289|consen 421 -----------------LKNFKTIQLDEK-KEVNSLSFDQSGTYLGIAGS---DLQVYICKKKTKSWTEIKELADHSGLS 479 (506)
T ss_pred -----------------hcccceeecccc-ccceeEEEcCCCCeEEeecc---eeEEEEEecccccceeeehhhhccccc
Confidence 112222111110 02238999999999999987 7777777754 66777888888899
Q ss_pred EEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 340 IDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 340 ~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
+.+.|....++|+++|.|..++++.+
T Consensus 480 t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 480 TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeecccceEEeeccchhheEEeec
Confidence 99999999999999999999988764
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=239.15 Aligned_cols=277 Identities=18% Similarity=0.324 Sum_probs=236.5
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeE-eecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKE-LRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
+...+.|..|. +.++++++.+++|++|+..++..+.. +.+| .+.|.++++..-+.+|++|+.|.+++|||..+|.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH--~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGH--FGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCC--CCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 34678888887 56899999999999999999998887 8766 9999999998878899999999999999999999
Q ss_pred EEEEEEcCCCee-EEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 101 KITRIVLQQTPL-QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 101 ~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
+...+.+|.... .+...+ .++++++.|.++++|++.++....+... |...|.++
T Consensus 283 C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~~~--------------------h~~~V~~v 337 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLLRG--------------------HTGPVNCV 337 (537)
T ss_pred EEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEecc--------------------ccccEEEE
Confidence 999999887644 444333 3677789999999999998887654322 44489999
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
.++ +.++++|+.||+|.+||+.+++++..+. +|...|+++.+... .++++|+.|++|++||+.
T Consensus 338 ~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~------------- 400 (537)
T KOG0274|consen 338 QLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR------------- 400 (537)
T ss_pred Eec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecCc-ceEEeeeeccceEeecCC-------------
Confidence 997 7899999999999999999999999998 79999999988765 799999999999999932
Q ss_pred hccCCCCCcceeeeeccc-eeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec-CC
Q 008844 260 EKGIAEPNGIEKMKMVGS-KCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG-PK 336 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~-h~ 336 (551)
+. +|+..+.+|...+. .+...+++|++++. |+.|++||.. +++++.+.+ |.
T Consensus 401 ----------------~~~~c~~tl~~h~~~v~-------~l~~~~~~Lvs~~a---D~~Ik~WD~~~~~~~~~~~~~~~ 454 (537)
T KOG0274|consen 401 ----------------TKRKCIHTLQGHTSLVS-------SLLLRDNFLVSSSA---DGTIKLWDAEEGECLRTLEGRHV 454 (537)
T ss_pred ----------------chhhhhhhhcCCccccc-------ccccccceeEeccc---cccEEEeecccCceeeeeccCCc
Confidence 23 67888888888775 34456889999999 9999999999 999999999 67
Q ss_pred CceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 337 EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 337 ~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
..|..+++. ...+++++.||++++||+.+++...
T Consensus 455 ~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 455 GGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred ccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 889998886 5688888999999999999876543
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-28 Score=208.57 Aligned_cols=259 Identities=17% Similarity=0.243 Sum_probs=201.7
Q ss_pred cccccCCCCccceeecccccceEEEEEEcCC-CCEEEEEeCCCeEEEEeccC-CceeeEeecccccccEEEEEecC-CCC
Q 008844 4 PIIDPLQGDFPEVIEEYLEHGVMKCIAFNRR-GTLLAAGCSDGSCVIWDFET-RGIAKELRDKECVAAITSVCWSK-YGH 80 (551)
Q Consensus 4 ~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~d-g~~latg~~dg~I~iwd~~~-~~~~~~~~~~~h~~~V~~l~~s~-~g~ 80 (551)
.|.++....-...+..+.-...+..++|+++ .+.+++++.||+++|||+.. ..+++.++. |...|.++.|++ ++.
T Consensus 41 ~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--H~~EV~Svdwn~~~r~ 118 (311)
T KOG0277|consen 41 FILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE--HKREVYSVDWNTVRRR 118 (311)
T ss_pred EEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh--hhhheEEeccccccce
Confidence 3444443333444555555678999999986 46788899999999999643 345666655 499999999998 456
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
.+++++.|++|++|+...+..+.++.++..
T Consensus 119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~-------------------------------------------------- 148 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNRPNSVQTFNGHNS-------------------------------------------------- 148 (311)
T ss_pred eEEeeccCCceEeecCCCCcceEeecCCcc--------------------------------------------------
Confidence 778889999999999998888888887654
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeC-CCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee-CCCEEEEeeCCC
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKY-GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR-NGQYLLTNSNDR 238 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg 238 (551)
.|..++|+|. .+++++++.||++++||++.......++ .|...|.++.|+. +...|+||+.|+
T Consensus 149 --------------~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~ 213 (311)
T KOG0277|consen 149 --------------CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDN 213 (311)
T ss_pred --------------EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCc
Confidence 3344444443 4689999999999999998754433454 7889999999997 556889999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC-CCEEEEeeccCCcc
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD-GEWVIAGSASKGEH 317 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d-g~~l~~gs~~~~dg 317 (551)
.||+||+..- ...+..+.+|.-.|. .+.|||. ...||+++. |-
T Consensus 214 ~vr~wDir~~----------------------------r~pl~eL~gh~~AVR-----kvk~Sph~~~lLaSasY---Dm 257 (311)
T KOG0277|consen 214 LVRGWDIRNL----------------------------RTPLFELNGHGLAVR-----KVKFSPHHASLLASASY---DM 257 (311)
T ss_pred eEEEEehhhc----------------------------cccceeecCCceEEE-----EEecCcchhhHhhhccc---cc
Confidence 9999993321 223556677777777 8899995 567889999 99
Q ss_pred eEEEEecC--CceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEec
Q 008844 318 KIYIWDRA--GYLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAK 365 (551)
Q Consensus 318 ~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~ 365 (551)
+++|||.. ..++.....|++-+..+.|++-.+ ++|+++.|+.++||+.
T Consensus 258 T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999998 556777888999999999998654 9999999999999985
No 60
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.4e-28 Score=229.42 Aligned_cols=273 Identities=16% Similarity=0.184 Sum_probs=233.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
+|.|||..++.....+.. ..-+|.+..|-+.-+++++|+.|..|+||+..|++.++.|..| ..-|.+|+.+|.-.+
T Consensus 36 ~V~IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH--~DyIR~iavHPt~P~ 111 (794)
T KOG0276|consen 36 DVQIWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH--SDYIRSIAVHPTLPY 111 (794)
T ss_pred eeEEEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc--ccceeeeeecCCCCe
Confidence 578999999987777665 4578999999999999999999999999999999999999876 999999999999999
Q ss_pred EEEEeCCCCEEEEEcCCC-eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKG-EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
++|+|.|-+|++||.+.+ .+.+++.+|..
T Consensus 112 vLtsSDDm~iKlW~we~~wa~~qtfeGH~H-------------------------------------------------- 141 (794)
T KOG0276|consen 112 VLTSSDDMTIKLWDWENEWACEQTFEGHEH-------------------------------------------------- 141 (794)
T ss_pred EEecCCccEEEEeeccCceeeeeEEcCcce--------------------------------------------------
Confidence 999999999999999765 45556665542
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC--CEEEEeeCC
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG--QYLLTNSND 237 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~t~s~D 237 (551)
-|.+++|+|.. +.+++++-|++|+||.+.+..+..++. +|...|+|+.|-+.| .+|++|+.|
T Consensus 142 --------------yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 142 --------------YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred --------------EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCC
Confidence 56677777755 789999999999999999999988888 999999999998855 599999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
.+|+||| ..+..|++++.+|...|. .++|.|.-.+|++|+. ||
T Consensus 207 ~tiKvWD-----------------------------yQtk~CV~TLeGHt~Nvs-----~v~fhp~lpiiisgsE---DG 249 (794)
T KOG0276|consen 207 LTIKVWD-----------------------------YQTKSCVQTLEGHTNNVS-----FVFFHPELPIIISGSE---DG 249 (794)
T ss_pred ceEEEee-----------------------------cchHHHHHHhhcccccce-----EEEecCCCcEEEEecC---Cc
Confidence 9999999 344789999999999998 8899999999999999 99
Q ss_pred eEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceeecCCccee
Q 008844 318 KIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFAPDFKEL 381 (551)
Q Consensus 318 ~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~spd~~~l 381 (551)
+++||+.. -++...|.-.-+.|.+++-.+.+..++.|...|.|. ..+...+......+.|+.+
T Consensus 250 TvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd~~gKIi 313 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMDSNGKII 313 (794)
T ss_pred cEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeecCCccEE
Confidence 99999998 777777776778999999999999988888666654 4666555555555555443
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3e-29 Score=232.49 Aligned_cols=254 Identities=19% Similarity=0.272 Sum_probs=209.5
Q ss_pred ceeeEeecccccccEEEEEecC-CCCEEEEEeCCCCEEEEEcCC-CeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCC
Q 008844 56 GIAKELRDKECVAAITSVCWSK-YGHRILVSAADKSLTLWDVLK-GEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLS 132 (551)
Q Consensus 56 ~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~ 132 (551)
+.+.++. +|+..|+++.|.| .+.+|++++.|+.|+||++.. +.+++++.+|.. +..++|+..+. .+++++.|
T Consensus 205 k~~~~~~--gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD 279 (503)
T KOG0282|consen 205 KLSHNLS--GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFD 279 (503)
T ss_pred hheeecc--CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeecc
Confidence 3445554 4599999999999 899999999999999999977 889999998874 67889998865 79999999
Q ss_pred CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEee
Q 008844 133 SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALV 211 (551)
Q Consensus 133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~ 211 (551)
..+++||+.+|+........ ..++|+.|+|++ +.+++|+.|+.|+.||+++++.+..+
T Consensus 280 ~~lKlwDtETG~~~~~f~~~---------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLD---------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred eeeeeeccccceEEEEEecC---------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 99999999999987543222 178999999999 89999999999999999999988887
Q ss_pred eccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccc
Q 008844 212 PVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSIT 291 (551)
Q Consensus 212 ~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 291 (551)
. .|-+.|..+.|-++|+++++.+.|++++||+...+. .+. ....+.
T Consensus 339 d-~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-----------------------------~ik----~i~~~~ 384 (503)
T KOG0282|consen 339 D-RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-----------------------------PIK----NIADPE 384 (503)
T ss_pred H-hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-----------------------------cch----hhcchh
Confidence 5 788999999999999999999999999999943331 000 011111
Q ss_pred eeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC----CceeEEEecCC--CceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 292 KMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA----GYLVKILEGPK--EALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 292 ~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~----~~~~~~l~~h~--~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
.....+|..+|++.++++-+. ++.|.||.+. ...-+.++||. +.-..+.|||||.+|++|+.||.+.+||.
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~---dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSM---DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDW 461 (503)
T ss_pred hccCcceecCCCCCeehhhcc---CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeec
Confidence 111227899999999999999 9999999987 33456678886 45678999999999999999999999999
Q ss_pred CCCCcce
Q 008844 366 DYTENWS 372 (551)
Q Consensus 366 ~~~~~~~ 372 (551)
.+.....
T Consensus 462 kt~kl~~ 468 (503)
T KOG0282|consen 462 KTTKLVS 468 (503)
T ss_pred hhhhhhh
Confidence 8876444
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=201.80 Aligned_cols=264 Identities=21% Similarity=0.248 Sum_probs=213.8
Q ss_pred eeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcE
Q 008844 58 AKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPM 136 (551)
Q Consensus 58 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~ 136 (551)
++.+..+ .++|.++.|+-+|+|.++++.|.+|++|+...|.+++++.+|.. +..+..+.+. ..+.+|+.|..+.
T Consensus 10 ~~~l~~~--qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn---skf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCA--QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN---SKFASCGGDKAVQ 84 (307)
T ss_pred ceeeccc--ccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc---cccccCCCCceEE
Confidence 3455555 89999999999999999999999999999999999999998864 6666666553 3689999999999
Q ss_pred EEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCc--EEEeeecc
Q 008844 137 IVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQ--IRALVPVS 214 (551)
Q Consensus 137 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~ 214 (551)
+||+.+|+.... ..+|...|+.+.|+.....+++|+.|..+++||.++.. +++.+. .
T Consensus 85 vwDV~TGkv~Rr--------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-e 143 (307)
T KOG0316|consen 85 VWDVNTGKVDRR--------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-E 143 (307)
T ss_pred EEEcccCeeeee--------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-h
Confidence 999999987532 34455589999999999999999999999999998764 466664 5
Q ss_pred CccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceee
Q 008844 215 GAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMH 294 (551)
Q Consensus 215 ~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 294 (551)
....|.++..+ +..|++|+.||++|.||++.. . ....-+..+|+
T Consensus 144 a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G-----------------------------~--l~sDy~g~pit--- 187 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG-----------------------------T--LSSDYFGHPIT--- 187 (307)
T ss_pred hcCceeEEEec--ccEEEeeccCCcEEEEEeecc-----------------------------e--eehhhcCCcce---
Confidence 56778888875 567999999999999993322 1 11222445566
Q ss_pred eeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCce--EEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 295 WKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEAL--IDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 295 ~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v--~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
+++||++|+.+++++. +++|++.|.. |+++..++||...- ...+++.....+++|+.||.|++||+......
T Consensus 188 --~vs~s~d~nc~La~~l---~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 188 --SVSFSKDGNCSLASSL---DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred --eEEecCCCCEEEEeec---cceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence 9999999999999999 9999999999 99999999998653 45566777779999999999999999988777
Q ss_pred eeecCCcceeceeceee
Q 008844 372 SAFAPDFKELEENEEYV 388 (551)
Q Consensus 372 ~~~spd~~~l~~~~~~~ 388 (551)
+.++..+..+.....+-
T Consensus 263 sk~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 263 SKLSVVSTVIVTDLSCH 279 (307)
T ss_pred eeeccCCceeEEeeecc
Confidence 77766665544444333
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.1e-26 Score=221.85 Aligned_cols=250 Identities=20% Similarity=0.344 Sum_probs=208.3
Q ss_pred eEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCe-eEEEEecCCCCCcEEEEeeCCCCcEE
Q 008844 59 KELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTP-LQARLHPGSSTPSLCLACPLSSAPMI 137 (551)
Q Consensus 59 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~i 137 (551)
.++.+ |..+|++++|+|++++|++++.++.|.+|++.++.....+..+... ..+.|.|++ ..+++++.++.+.+
T Consensus 3 ~~~~~--h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLKG--HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG---TYLASGSSDKTIRL 77 (289)
T ss_pred hHhcc--cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC---CEEEEEcCCCeEEE
Confidence 34544 5899999999999999999999999999999988877777776654 488999875 47888889999999
Q ss_pred EEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCcc
Q 008844 138 VDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAA 217 (551)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 217 (551)
|++..+....... .+...+.++.|++++.++++++.+|.|.+||+.+++....+. .|..
T Consensus 78 ~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~ 136 (289)
T cd00200 78 WDLETGECVRTLT--------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTD 136 (289)
T ss_pred EEcCcccceEEEe--------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCC
Confidence 9998864322211 122378999999999888888889999999999888877775 6888
Q ss_pred ceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeee
Q 008844 218 VIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKA 297 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 297 (551)
.|.+++|+|++.+|++++.++.|++||+. ....+..+..+...+. +
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-----------------------------~~~~~~~~~~~~~~i~-----~ 182 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLR-----------------------------TGKCVATLTGHTGEVN-----S 182 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEcc-----------------------------ccccceeEecCccccc-----e
Confidence 99999999999999988889999999932 1333445556666666 8
Q ss_pred eEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 298 PCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 298 ~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
++|+|++++|++++. ++.|++||+. +..+..+..|...+.+++|+|++.++++++.+|.|++|++...+..
T Consensus 183 ~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 183 VAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred EEECCCcCEEEEecC---CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 899999999999998 8999999999 8888888889999999999999889999888999999999875543
No 64
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7e-27 Score=201.51 Aligned_cols=261 Identities=15% Similarity=0.254 Sum_probs=197.5
Q ss_pred ccccccCCCC---ccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC--ceeeEeecccccccEEEEEecC
Q 008844 3 APIIDPLQGD---FPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR--GIAKELRDKECVAAITSVCWSK 77 (551)
Q Consensus 3 l~lwd~~~~~---~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~--~~~~~~~~~~h~~~V~~l~~s~ 77 (551)
|+||+...++ ...++.. .|...|.+++|+|.|++||+|+.|.++.||.-..+ +++.++.+| ...|.|++|++
T Consensus 39 vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGH--EnEVK~Vaws~ 115 (312)
T KOG0645|consen 39 VRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGH--ENEVKCVAWSA 115 (312)
T ss_pred EEEEecCCCCcEEEEEeccc-cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecc--ccceeEEEEcC
Confidence 6788776422 2223333 48899999999999999999999999999987644 567777766 99999999999
Q ss_pred CCCEEEEEeCCCCEEEEEcCCC---eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccC
Q 008844 78 YGHRILVSAADKSLTLWDVLKG---EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVP 153 (551)
Q Consensus 78 ~g~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 153 (551)
+|+||++++.|+.|.||.+..+ .++..+..|. .+..+.|||... ++++++.|++|++|.-..+.-.....
T Consensus 116 sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d---lL~S~SYDnTIk~~~~~~dddW~c~~--- 189 (312)
T KOG0645|consen 116 SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED---LLFSCSYDNTIKVYRDEDDDDWECVQ--- 189 (312)
T ss_pred CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc---eeEEeccCCeEEEEeecCCCCeeEEE---
Confidence 9999999999999999998754 4556666664 578899999643 89999999999999877332111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEE
Q 008844 154 DVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLT 233 (551)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t 233 (551)
...+|...+.+++|++.|..|++++.|++|+||-.. ..++..|...++.+.|. ...|++
T Consensus 190 --------------tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS 248 (312)
T KOG0645|consen 190 --------------TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIAS 248 (312)
T ss_pred --------------EecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccceEeeeec--ccceEe
Confidence 112333489999999999999999999999999866 34444678999999998 447999
Q ss_pred eeCCCeEEEEeCcC-CccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC-CCEEEEee
Q 008844 234 NSNDRTIRIYDNLL-PLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD-GEWVIAGS 311 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d-g~~l~~gs 311 (551)
++.|+.|++|.... |.......+ ......|...|+ ++.|.|. ...|++|+
T Consensus 249 ~ggD~~i~lf~~s~~~d~p~~~l~-----------------------~~~~~aHe~dVN-----sV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 249 GGGDDAIRLFKESDSPDEPSWNLL-----------------------AKKEGAHEVDVN-----SVQWNPKVSNRLASGG 300 (312)
T ss_pred ccCCCEEEEEEecCCCCCchHHHH-----------------------Hhhhcccccccc-----eEEEcCCCCCceeecC
Confidence 99999999997211 000000000 112334655666 8899994 67888998
Q ss_pred ccCCcceEEEEec
Q 008844 312 ASKGEHKIYIWDR 324 (551)
Q Consensus 312 ~~~~dg~I~iwd~ 324 (551)
. ||.|++|.+
T Consensus 301 D---DG~v~~W~l 310 (312)
T KOG0645|consen 301 D---DGIVNFWEL 310 (312)
T ss_pred C---CceEEEEEe
Confidence 8 999999986
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=220.50 Aligned_cols=286 Identities=17% Similarity=0.240 Sum_probs=222.7
Q ss_pred cccceEEEEEEcCCC-CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 21 LEHGVMKCIAFNRRG-TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg-~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
.|...|.|++=+|.. ..+|+|+.||.|+|||+.+..+..++..| .+.|..|++.. ..+++++.|++|+.|-+..
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH--~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~- 138 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH--EGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG- 138 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc--cCceeeEEecc--cceEEecCCcceeeeeccC-
Confidence 488999999999987 78999999999999999999999999877 89999999986 6789999999999999754
Q ss_pred eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 100 EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
..+.++.+......+.-+... ..+++| ...|.|||.....+........ ..|.++
T Consensus 139 ~p~~tilg~s~~~gIdh~~~~---~~FaTc--Ge~i~IWD~~R~~Pv~smswG~--------------------Dti~sv 193 (433)
T KOG0268|consen 139 PPLHTILGKSVYLGIDHHRKN---SVFATC--GEQIDIWDEQRDNPVSSMSWGA--------------------DSISSV 193 (433)
T ss_pred Ccceeeecccccccccccccc---cccccc--CceeeecccccCCccceeecCC--------------------CceeEE
Confidence 567777666555555444322 233333 3468899987665443221111 178999
Q ss_pred EEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 180 CFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 180 ~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
.|+|.. ..|+++.+|+.|.+||+++..++..+ .-.-.-+.|+|+|.+-.+++++.|-.++.||+..-
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV--i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l---------- 261 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKV--ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL---------- 261 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCcccee--eeeccccceecCccccceeeccccccceehhhhhh----------
Confidence 999987 56777779999999999999987776 33455677999998878899999999999993211
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec-CC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG-PK 336 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~-h~ 336 (551)
...+....+|...|. .+.|||.|+-+++|+. |.+|+||... +..-.++.. --
T Consensus 262 ------------------~~p~~v~~dhvsAV~-----dVdfsptG~Efvsgsy---DksIRIf~~~~~~SRdiYhtkRM 315 (433)
T KOG0268|consen 262 ------------------SRPLNVHKDHVSAVM-----DVDFSPTGQEFVSGSY---DKSIRIFPVNHGHSRDIYHTKRM 315 (433)
T ss_pred ------------------cccchhhcccceeEE-----EeccCCCcchhccccc---cceEEEeecCCCcchhhhhHhhh
Confidence 234666778888887 8999999999999999 9999999998 543332211 12
Q ss_pred CceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceee
Q 008844 337 EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAF 374 (551)
Q Consensus 337 ~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~ 374 (551)
..|.++.|+.|.+++++||.|+.|++|.-...+.....
T Consensus 316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred heeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 46999999999999999999999999997765544333
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.4e-26 Score=251.14 Aligned_cols=264 Identities=13% Similarity=0.174 Sum_probs=211.2
Q ss_pred CCeEEEEeccCCceeeEeec---ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC----e----EEEEEEcCCCee
Q 008844 44 DGSCVIWDFETRGIAKELRD---KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG----E----KITRIVLQQTPL 112 (551)
Q Consensus 44 dg~I~iwd~~~~~~~~~~~~---~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~----~----~~~~~~~~~~~~ 112 (551)
+|.+++|+..+......+.. ..|...|++++|+|+|++|++|+.|+.|+||++... . ....+..+..+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 67788998887665444432 236899999999999999999999999999997531 1 233344456677
Q ss_pred EEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee-CCCEEEEE
Q 008844 113 QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK-YGDLVYVG 191 (551)
Q Consensus 113 ~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g 191 (551)
.+.|+|.. ..++++++.++.+++||+.++...... ..|...|++++|+| ++.+|++|
T Consensus 537 ~l~~~~~~--~~~las~~~Dg~v~lWd~~~~~~~~~~--------------------~~H~~~V~~l~~~p~~~~~L~Sg 594 (793)
T PLN00181 537 GICWNSYI--KSQVASSNFEGVVQVWDVARSQLVTEM--------------------KEHEKRVWSIDYSSADPTLLASG 594 (793)
T ss_pred eEEeccCC--CCEEEEEeCCCeEEEEECCCCeEEEEe--------------------cCCCCCEEEEEEcCCCCCEEEEE
Confidence 88888753 347999999999999999887654321 12344899999996 78999999
Q ss_pred ecCceEEEEECCCCcEEEeeeccCccceEEEEEe-eCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcce
Q 008844 192 NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFS-RNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIE 270 (551)
Q Consensus 192 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (551)
+.||.|++||++++..+..+. +...|.++.|+ ++|.+|++|+.||.|++||+...
T Consensus 595 s~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~---------------------- 650 (793)
T PLN00181 595 SDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP---------------------- 650 (793)
T ss_pred cCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----------------------
Confidence 999999999999998887774 45679999995 57899999999999999993211
Q ss_pred eeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-C------ceeEEEecCCCceEEEE
Q 008844 271 KMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-G------YLVKILEGPKEALIDLA 343 (551)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~------~~~~~l~~h~~~v~~l~ 343 (551)
...+..+.+|...|. .+.|. ++.+|++++. |+.|+|||+. + .++..+.+|...+..++
T Consensus 651 ------~~~~~~~~~h~~~V~-----~v~f~-~~~~lvs~s~---D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 651 ------KLPLCTMIGHSKTVS-----YVRFV-DSSTLVSSST---DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred ------CccceEecCCCCCEE-----EEEEe-CCCEEEEEEC---CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 112445567877777 77886 7889999999 9999999986 2 57888999999999999
Q ss_pred EecCCCeEEEEcCCCcEEEEecCCC
Q 008844 344 WHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 344 ~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
|+|++.+|++|+.|+.|+||+....
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999999999997654
No 67
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=4.4e-27 Score=205.64 Aligned_cols=244 Identities=18% Similarity=0.286 Sum_probs=205.3
Q ss_pred ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-CeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC
Q 008844 64 KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK-GEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLS 141 (551)
Q Consensus 64 ~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~ 141 (551)
.+|.+.|+.+.|+|+|.+|+||+.|..|.+|++.. -+-...+.+|. .+..+.|.+++. .+++++.|.+++.||+.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s---~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS---HILSCGTDKTVRGWDAE 120 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC---EEEEecCCceEEEEecc
Confidence 35699999999999999999999999999999643 34445566665 478889998865 89999999999999999
Q ss_pred CCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceE
Q 008844 142 TGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIK 220 (551)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~ 220 (551)
+++...-. ..|..-++++.-+.-| .++.+|+.||++++||+++...+.++ .....++
T Consensus 121 tG~~~rk~--------------------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~--~~kyqlt 178 (338)
T KOG0265|consen 121 TGKRIRKH--------------------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF--ENKYQLT 178 (338)
T ss_pred cceeeehh--------------------ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc--ccceeEE
Confidence 99875432 2333366667655556 45677889999999999999998888 6778899
Q ss_pred EEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEE
Q 008844 221 NIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCF 300 (551)
Q Consensus 221 ~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 300 (551)
++.|...+..+.+|+-|+.|++||++ ....+.++.+|.+.|+ .+..
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r-----------------------------~~d~~~~lsGh~DtIt-----~lsl 224 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLR-----------------------------KNDGLYTLSGHADTIT-----GLSL 224 (338)
T ss_pred EEEecccccceeeccccCceeeeccc-----------------------------cCcceEEeecccCcee-----eEEe
Confidence 99999999999999999999999932 2567889999999999 8899
Q ss_pred cCCCCEEEEeeccCCcceEEEEecC-----CceeEEEecCCC----ceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 301 SGDGEWVIAGSASKGEHKIYIWDRA-----GYLVKILEGPKE----ALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 301 s~dg~~l~~gs~~~~dg~I~iwd~~-----~~~~~~l~~h~~----~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+++|.++.+-+. |.+|++||+. ..++..+.+|.. ....++|+|++..+.+++.|..+++||..+..
T Consensus 225 s~~gs~llsnsM---d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 225 SRYGSFLLSNSM---DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred ccCCCccccccc---cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc
Confidence 999999999999 9999999998 345888888753 46788999999999999999999999987744
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.5e-25 Score=184.75 Aligned_cols=293 Identities=18% Similarity=0.252 Sum_probs=224.3
Q ss_pred eeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC------C-----c--eeeEeecccccccEEEEEecCCCCEE
Q 008844 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET------R-----G--IAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 16 ~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~------~-----~--~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
.+..+.....|.+++|+|.|.+.|+|+...+++|.-... + + .+..-+...|.+.|.|.+|+|+|.+|
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli 104 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI 104 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE
Confidence 344444567899999999999999999999999875421 1 0 12222334579999999999999999
Q ss_pred EEEeCCCCEEEEEcCCCeEE-----EEEEcC-CCeeEEEEecCCCCCcEEEEeeCC--CCcEEEEcCCCceeeeccccCC
Q 008844 83 LVSAADKSLTLWDVLKGEKI-----TRIVLQ-QTPLQARLHPGSSTPSLCLACPLS--SAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~-----~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
++|+.|++|++..++...+. ..+..| ..+..++|..+......+++.... ..|++-|..+++....
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a------ 178 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA------ 178 (350)
T ss_pred EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee------
Confidence 99999999999877543321 233333 346778887665555555555444 4555666666654321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc-C-----ccceEEEEEeeCC
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS-G-----AAVIKNIVFSRNG 228 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-~-----~~~i~~l~~s~~g 228 (551)
..+|...|.++ ++-+|-+|++|+.|.+|++||++-..++.++... | ...|.+++..|.|
T Consensus 179 --------------~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 179 --------------LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred --------------ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 12233344443 4556889999999999999999988887776321 1 3679999999999
Q ss_pred CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEE
Q 008844 229 QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVI 308 (551)
Q Consensus 229 ~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~ 308 (551)
++|++|-.|....+|| +.+++.+..+..|...|. ++.|||...||+
T Consensus 244 rll~sg~~dssc~lyd-----------------------------irg~r~iq~f~phsadir-----~vrfsp~a~yll 289 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYD-----------------------------IRGGRMIQRFHPHSADIR-----CVRFSPGAHYLL 289 (350)
T ss_pred ceeeeccCCCceEEEE-----------------------------eeCCceeeeeCCCcccee-----EEEeCCCceEEE
Confidence 9999999999999999 556788999999999988 999999999999
Q ss_pred EeeccCCcceEEEEecCCce-----eEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 309 AGSASKGEHKIYIWDRAGYL-----VKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 309 ~gs~~~~dg~I~iwd~~~~~-----~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+++. |..|++-|++|.+ +..+..|+..+..+.|+|..-.+++.+.|.++.+|.+.
T Consensus 290 t~sy---d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 290 TCSY---DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred Eecc---cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999 9999999999543 33445699999999999999999999999999999864
No 69
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.8e-26 Score=229.33 Aligned_cols=238 Identities=10% Similarity=0.120 Sum_probs=177.2
Q ss_pred EeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC-CCEEEEEeCCCCEEEEEcCCCeE-EEEEEcCCCeeEEEEec
Q 008844 41 GCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY-GHRILVSAADKSLTLWDVLKGEK-ITRIVLQQTPLQARLHP 118 (551)
Q Consensus 41 g~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~p 118 (551)
|+.++.|++|+......+..+.+| ...|.+++|+|+ +.+|++|+.|++|+|||+.++.. ...+. .....
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH--~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~--~p~~~----- 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGH--TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK--DPQCI----- 120 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCC--CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc--cceEE-----
Confidence 556788999998877777777655 899999999996 78999999999999999976432 11000 00000
Q ss_pred CCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCE-EEEEecCceE
Q 008844 119 GSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDL-VYVGNSKGEI 197 (551)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~g~~dg~i 197 (551)
...|...|.+++|+|++.. |++|+.||+|
T Consensus 121 --------------------------------------------------L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 121 --------------------------------------------------LKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred --------------------------------------------------eecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 0112237999999999875 5688999999
Q ss_pred EEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccc
Q 008844 198 LVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGS 277 (551)
Q Consensus 198 ~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (551)
+|||+++++.+..+ .+...|.+++|+|+|.+|++++.|+.|+|||+. ..
T Consensus 151 rIWDl~tg~~~~~i--~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R-----------------------------sg 199 (568)
T PTZ00420 151 NIWDIENEKRAFQI--NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR-----------------------------KQ 199 (568)
T ss_pred EEEECCCCcEEEEE--ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC-----------------------------CC
Confidence 99999999877666 466789999999999999999999999999932 24
Q ss_pred eeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC-CcceEEEEecC--CceeEEEecC--CCceEEEEEecCCCeEE
Q 008844 278 KCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK-GEHKIYIWDRA--GYLVKILEGP--KEALIDLAWHPVHPIIV 352 (551)
Q Consensus 278 ~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~-~dg~I~iwd~~--~~~~~~l~~h--~~~v~~l~~sp~~~~l~ 352 (551)
..+..+.+|.+.+....+....|++++.+|++++.++ .++.|+|||+. +.++..+..+ .+.+......+++.+++
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence 4566677787766543333456789999999887621 12479999998 6666655433 23334444455688899
Q ss_pred EEcCCCcEEEEecCCC
Q 008844 353 SVSLTGWVYIWAKDYT 368 (551)
Q Consensus 353 s~s~dg~i~iW~~~~~ 368 (551)
+|+.|+.|++|++..+
T Consensus 280 sGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEECCCeEEEEEccCC
Confidence 9999999999999764
No 70
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.8e-26 Score=228.54 Aligned_cols=254 Identities=11% Similarity=0.099 Sum_probs=186.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee-------------eEeecccccccEEEEEecC-CCCEEEEEeCCC
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIA-------------KELRDKECVAAITSVCWSK-YGHRILVSAADK 89 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~-------------~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg 89 (551)
..|....+++++..+++++.+.....|+...+..+ ..+. +|.+.|++++|+| ++++|++|+.|+
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~--GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL--GQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe--CCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 45666677778777777777777777876543322 1233 4599999999999 889999999999
Q ss_pred CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 90 SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
+|++||+.++...... .... ...
T Consensus 99 tIkIWdi~~~~~~~~~--~~~l-------------------------------------------------------~~L 121 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNI--SDPI-------------------------------------------------------VHL 121 (493)
T ss_pred EEEEEecCCCcccccc--Ccce-------------------------------------------------------EEe
Confidence 9999999765321100 0000 000
Q ss_pred CCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCC
Q 008844 170 GTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~ 248 (551)
..|...|.+++|+|++ ++|++|+.|+.|+|||+.+++.+..+. .|...|.+++|+|+|.+|++++.|++|+|||+.
T Consensus 122 ~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r-- 198 (493)
T PTZ00421 122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR-- 198 (493)
T ss_pred cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECC--
Confidence 1233388999999986 799999999999999999998877775 788999999999999999999999999999932
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeecc-CCcceEEEEecC--
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS-KGEHKIYIWDRA-- 325 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~-~~dg~I~iwd~~-- 325 (551)
....+..+..|..... ..+.|.+++.+|++++.+ ..++.|+|||+.
T Consensus 199 ---------------------------sg~~v~tl~~H~~~~~----~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 199 ---------------------------DGTIVSSVEAHASAKS----QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred ---------------------------CCcEEEEEecCCCCcc----eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 2334555666655432 156788888777765431 127899999998
Q ss_pred CceeEEEecCC-CceEEEEEecCCCeEEEEcC-CCcEEEEecCCCCc
Q 008844 326 GYLVKILEGPK-EALIDLAWHPVHPIIVSVSL-TGWVYIWAKDYTEN 370 (551)
Q Consensus 326 ~~~~~~l~~h~-~~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~~~~~ 370 (551)
..++.....+. ..+....|++++.+|++++. |+.|++|++..++.
T Consensus 248 ~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 248 ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 44555554343 45666789999999998885 99999999987653
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1e-26 Score=236.10 Aligned_cols=282 Identities=16% Similarity=0.205 Sum_probs=209.9
Q ss_pred cceEEEEEEcCCCCEEEEEe--CCCeEEEEeccC------------CceeeEeecccccccEEEEEecCCCCEEEEEeCC
Q 008844 23 HGVMKCIAFNRRGTLLAAGC--SDGSCVIWDFET------------RGIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~--~dg~I~iwd~~~------------~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d 88 (551)
...|.+|..+|+|..+|||+ .||.++||+.+. .+.+.++. .|.+.|+|+.|+|||.+||+|+.|
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~--~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD--DHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec--cccCceeEEEECCCCCeEeeccCc
Confidence 36799999999999999999 899999998753 12233343 359999999999999999999999
Q ss_pred CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCC
Q 008844 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 89 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
+.|.||..... ........ .+ ....+--| +. ...
T Consensus 91 ~~v~iW~~~~~-~~~~~fgs---------~g-----------~~~~vE~w-----k~--------------------~~~ 124 (942)
T KOG0973|consen 91 RLVMIWERAEI-GSGTVFGS---------TG-----------GAKNVESW-----KV--------------------VSI 124 (942)
T ss_pred ceEEEeeeccc-CCcccccc---------cc-----------ccccccee-----eE--------------------EEE
Confidence 99999986531 00000000 00 00000000 00 001
Q ss_pred CCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCC
Q 008844 169 DGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~ 248 (551)
...|...|..++|+|++.++++++.|++|.||+.++.+.+..+. .|.+.|..+.|.|-|+|||+-+.|++|+||++..
T Consensus 125 l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d- 202 (942)
T KOG0973|consen 125 LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD- 202 (942)
T ss_pred EecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-cccccccceEECCccCeeeeecCCceEEEEEccc-
Confidence 12244589999999999999999999999999999998888887 9999999999999999999999999999998221
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeec-ccccccceeeeeeeEEcCCCCEEEEeeccC-CcceEEEEecC-
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR-EFQDSITKMHWKAPCFSGDGEWVIAGSASK-GEHKIYIWDRA- 325 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~-~dg~I~iwd~~- 325 (551)
..+...+. .++.......+..+.|||||+||++....+ +-.++.|.+..
T Consensus 203 ----------------------------w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 203 ----------------------------WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred ----------------------------ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 11222222 233334444556899999999999986643 45679999998
Q ss_pred CceeEEEecCCCceEEEEEecC------C-----------CeEEEEcCCCcEEEEecCCCCcce-------------eec
Q 008844 326 GYLVKILEGPKEALIDLAWHPV------H-----------PIIVSVSLTGWVYIWAKDYTENWS-------------AFA 375 (551)
Q Consensus 326 ~~~~~~l~~h~~~v~~l~~sp~------~-----------~~l~s~s~dg~i~iW~~~~~~~~~-------------~~s 375 (551)
.+.-..|-||..++.+++|+|. . ..+|+||.|++|.||......... .|+
T Consensus 255 Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 255 WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS 334 (942)
T ss_pred ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc
Confidence 7778889999999999999973 1 167888999999999987655321 788
Q ss_pred CCcceec
Q 008844 376 PDFKELE 382 (551)
Q Consensus 376 pd~~~l~ 382 (551)
|||-.|-
T Consensus 335 pdG~~Lf 341 (942)
T KOG0973|consen 335 PDGFSLF 341 (942)
T ss_pred CCCCeEE
Confidence 9887653
No 72
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=5.1e-26 Score=228.34 Aligned_cols=243 Identities=19% Similarity=0.243 Sum_probs=181.2
Q ss_pred cccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCc-------eeeEeecccccccEEEEEecCCC-CEEEEEeCCCCE
Q 008844 21 LEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRG-------IAKELRDKECVAAITSVCWSKYG-HRILVSAADKSL 91 (551)
Q Consensus 21 ~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~-------~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i 91 (551)
.|.+.|++++|+| ++++||+|+.|++|+|||+.++. .+..+.+ |...|.+|+|+|++ ++|++++.|++|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g--H~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG--HTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC--CCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 3889999999999 88999999999999999997653 3455655 48999999999975 699999999999
Q ss_pred EEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 92 TLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
+|||+.++..+..+..+..
T Consensus 151 rIWDl~tg~~~~~l~~h~~------------------------------------------------------------- 169 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSD------------------------------------------------------------- 169 (493)
T ss_pred EEEECCCCeEEEEEcCCCC-------------------------------------------------------------
Confidence 9999998877665543321
Q ss_pred CCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCcc-ceEEEEEeeCCCEEEEee----CCCeEEEEeCc
Q 008844 172 PPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAA-VIKNIVFSRNGQYLLTNS----NDRTIRIYDNL 246 (551)
Q Consensus 172 ~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~t~s----~Dg~i~iwd~~ 246 (551)
.|.+++|+|+|.+|++|+.||.|+|||+++++.+..+. .|.+ .+..+.|.+++..|++++ .|+.|++||+.
T Consensus 170 ---~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 170 ---QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred ---ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 78899999999999999999999999999999887775 5554 345678998887777654 47999999932
Q ss_pred CCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-
Q 008844 247 LPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA- 325 (551)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~- 325 (551)
.. ...+.....+.... ...+.|++++++|++++. +|+.|++|++.
T Consensus 246 ~~----------------------------~~p~~~~~~d~~~~----~~~~~~d~d~~~L~lggk--gDg~Iriwdl~~ 291 (493)
T PTZ00421 246 KM----------------------------ASPYSTVDLDQSSA----LFIPFFDEDTNLLYIGSK--GEGNIRCFELMN 291 (493)
T ss_pred CC----------------------------CCceeEeccCCCCc----eEEEEEcCCCCEEEEEEe--CCCeEEEEEeeC
Confidence 21 11111111111111 115678999999988763 18999999999
Q ss_pred CceeEEEec-CCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 326 GYLVKILEG-PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 326 ~~~~~~l~~-h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+.++..+.. +..++..++|.|....=+ ..--..+++.+.
T Consensus 292 ~~~~~~~~~~s~~~~~g~~~~pk~~~dv--~~~Ei~r~~~l~ 331 (493)
T PTZ00421 292 ERLTFCSSYSSVEPHKGLCMMPKWSLDT--RKCEIARFYALT 331 (493)
T ss_pred CceEEEeeccCCCCCcceEecccccccc--cceeeeEEEEec
Confidence 877766654 456788999998643211 112234666664
No 73
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=202.74 Aligned_cols=292 Identities=14% Similarity=0.144 Sum_probs=198.6
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--eeeEeecccccccEEEEEecCCCCEEEEE-eCCCCEEEEEcCC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG--IAKELRDKECVAAITSVCWSKYGHRILVS-AADKSLTLWDVLK 98 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~vwd~~~ 98 (551)
|.+.|+|++|+.||++|||++.|++|+||++.... ..+.++..-.-...+.+.|+||.+-++.. -...++++|.+..
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 78999999999999999999999999999987522 11222211112356889999997765554 4466899997642
Q ss_pred ---CeEEEEE------EcC--C--CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCC
Q 008844 99 ---GEKITRI------VLQ--Q--TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRN 165 (551)
Q Consensus 99 ---~~~~~~~------~~~--~--~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (551)
|.....+ .++ . .+..+-.. .+..++.+++.+..|.+|++.......+.....
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA---~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~------------ 229 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIA---GNAKYIMSASLDTKICLWDLKGQLLQSIDTNQS------------ 229 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeec---CCceEEEEecCCCcEEEEecCCceeeeeccccc------------
Confidence 2211110 111 1 12222222 234588999999999999999443332221111
Q ss_pred CCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCC---Cc-----EEEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 166 KYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKS---NQ-----IRALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 166 ~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~---~~-----~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
.-+..+.+|+|++|++++..-.|++|.+-- |. .+..+. +|...|..++|+++.+.+++.+.|
T Consensus 230 ---------~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 230 ---------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred ---------cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecC
Confidence 456788999999999999999999998642 22 123333 899999999999999999999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
|++||||+...... -.....++........-...+. .+.+||.|+.||.+.. .
T Consensus 300 G~wriwdtdVrY~~----------------------~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g----s 352 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEA----------------------GQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG----S 352 (420)
T ss_pred CcEEEeeccceEec----------------------CCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC----C
Confidence 99999993211100 0001111111111111111111 7899999999998875 6
Q ss_pred eEEEEecC-CceeEEEe-cCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 318 KIYIWDRA-GYLVKILE-GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 318 ~I~iwd~~-~~~~~~l~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
.|++|..+ |+....++ .|...|.+|+|+++|+++++|| |..+++..-.
T Consensus 353 ~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 353 DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence 79999998 77666554 5889999999999999999999 7888887643
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=201.98 Aligned_cols=243 Identities=19% Similarity=0.287 Sum_probs=195.9
Q ss_pred eeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC--EEEEEeCCCCEEE
Q 008844 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH--RILVSAADKSLTL 93 (551)
Q Consensus 16 ~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~--~l~s~s~dg~i~v 93 (551)
.+....|.+.|+|++. +|.|+|+|+.|-+|+|||+.+...+..+..| .+.|+++.|.++-. .|++|+.||.|.+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~H--agsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSH--AGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceecc--ccceEEEEecCCcchhheeeecCCCcEEE
Confidence 3344447899999998 5889999999999999999998888888765 99999999998764 8999999999999
Q ss_pred EEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 94 WDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
|++..-.++..++.|..
T Consensus 112 w~~~~W~~~~slK~H~~--------------------------------------------------------------- 128 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKG--------------------------------------------------------------- 128 (362)
T ss_pred EEcCCeEEeeeeccccc---------------------------------------------------------------
Confidence 99988888888876653
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccc
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
.|+.++++|.|++.++.+.|+.+++||+-+|+.-..+.+.+.. +.+.|+|.|.+++.+..+ .|-||.+-
T Consensus 129 -~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~~-~i~i~q~d------- 197 (362)
T KOG0294|consen 129 -QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVVSGRN-KIDIYQLD------- 197 (362)
T ss_pred -ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEEEecc-EEEEEecc-------
Confidence 7889999999999999999999999999999887766545544 349999999988888665 57788711
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
....+.....+.. +.++.| -++.+|++|.. ++.|.+||.. ..+...+
T Consensus 198 -------------------------~A~v~~~i~~~~r---~l~~~~-l~~~~L~vG~d---~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 198 -------------------------NASVFREIENPKR---ILCATF-LDGSELLVGGD---NEWISLKDTDSDTPLTEF 245 (362)
T ss_pred -------------------------cHhHhhhhhcccc---ceeeee-cCCceEEEecC---CceEEEeccCCCccceee
Confidence 1111222222211 103333 36778888888 8999999999 9999999
Q ss_pred ecCCCceEEEEE--ecCCCeEEEEcCCCcEEEEecCCC
Q 008844 333 EGPKEALIDLAW--HPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 333 ~~h~~~v~~l~~--sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
.+|...|.++.+ .|.+.+|+|+|.||.|+|||++..
T Consensus 246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999999985 567889999999999999999754
No 75
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=2.8e-28 Score=216.76 Aligned_cols=234 Identities=19% Similarity=0.293 Sum_probs=196.9
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
...|.|+.+. ...+++|..|++|+|||..+-.++..+.+|.. +.++.+... ++++++.|.++++||+.++..
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-----viisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-----VIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-----EEEecCCCceEEEEeccCCch
Confidence 5689999984 56799999999999999999888888888865 566666543 899999999999999999987
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEE--eeeccCccceEEEE
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRA--LVPVSGAAVIKNIV 223 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~~~~~i~~l~ 223 (551)
....+...+ .|..+.|+. .++++++.|.+|.+||+.+..-+. ....+|...|+.+.
T Consensus 270 l~tlihHce--------------------aVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVd 327 (499)
T KOG0281|consen 270 LNTLIHHCE--------------------AVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 327 (499)
T ss_pred hhHHhhhcc--------------------eeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeec
Confidence 655444332 677788864 589999999999999998765422 22238999999999
Q ss_pred EeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC
Q 008844 224 FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD 303 (551)
Q Consensus 224 ~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d 303 (551)
|+ .+++++++.|++|++|+ ..+..+++++.+|+..|. |.-..
T Consensus 328 fd--~kyIVsASgDRTikvW~-----------------------------~st~efvRtl~gHkRGIA-------ClQYr 369 (499)
T KOG0281|consen 328 FD--DKYIVSASGDRTIKVWS-----------------------------TSTCEFVRTLNGHKRGIA-------CLQYR 369 (499)
T ss_pred cc--cceEEEecCCceEEEEe-----------------------------ccceeeehhhhcccccce-------ehhcc
Confidence 95 56999999999999999 344788999999999886 34457
Q ss_pred CCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 304 GEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 304 g~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
|+++++|+. |.+|++||+. |.+++.|+||.+-|.++.| +.+.|++|+.||+|+|||+.......
T Consensus 370 ~rlvVSGSS---DntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 370 DRLVVSGSS---DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred CeEEEecCC---CceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCc
Confidence 899999999 9999999999 9999999999999999999 77899999999999999998865443
No 76
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=211.61 Aligned_cols=290 Identities=16% Similarity=0.154 Sum_probs=225.5
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccC--CceeeEeecccccccEEEEEecCCCC-EEEEEeCCCCEEEEEcCCC
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET--RGIAKELRDKECVAAITSVCWSKYGH-RILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~ 99 (551)
++.|+|+.|+|.-.+|++|+.||+++||.++. ...++.+... ..+|.+.+|.|+|. .+++++....+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 47899999999999999999999999998873 3455666554 78999999999999 8999999999999999887
Q ss_pred eEEEEEE--cCC--CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 100 EKITRIV--LQQ--TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 100 ~~~~~~~--~~~--~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
+....-. +.. .......+|++. +++..+..|.|.+....++........ ...
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~Ki---------------------eG~ 346 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKI---------------------EGV 346 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeee---------------------ccE
Confidence 6543322 222 234555667654 888999999999999888775432111 117
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
+..++|+.+++.|++.+.+|.|++||++...++..+...+.-.-++++.+++|.+||+|+..|.|.|||...-
T Consensus 347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~------- 419 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC------- 419 (514)
T ss_pred EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh-------
Confidence 8999999999999999999999999999999988886555555567888899999999999999999991110
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG 334 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~ 334 (551)
+.....+++..+......|+ .+.|++|++.||.++... ...+++..+. ......+..
T Consensus 420 ----------------~~s~~PkPik~~dNLtt~It-----sl~Fn~d~qiLAiaS~~~-knalrLVHvPS~TVFsNfP~ 477 (514)
T KOG2055|consen 420 ----------------FASTNPKPIKTVDNLTTAIT-----SLQFNHDAQILAIASRVK-KNALRLVHVPSCTVFSNFPT 477 (514)
T ss_pred ----------------hccCCCCchhhhhhhheeee-----eeeeCcchhhhhhhhhcc-ccceEEEeccceeeeccCCC
Confidence 00111333444555555555 899999999999998866 6789988887 444444433
Q ss_pred ---CCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 335 ---PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 335 ---h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.-+.|++|+|+|.+.+||.|...|.|.+|.+..
T Consensus 478 ~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 478 SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred CCCcccceEEEEecCCCceEEeecCCCceeeEeecc
Confidence 235689999999999999999999999999853
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=197.15 Aligned_cols=278 Identities=15% Similarity=0.211 Sum_probs=210.3
Q ss_pred cceEEEEEEcC-CCCEEEEEeCCCeEEEEeccC-CceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 23 HGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFET-RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 23 ~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~-~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
...|.+|+||| ...+|++|+.||+||+|+++. |..+. -..+.|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 46799999999 566777999999999999986 34333 2234579999999999999999999999999999999996
Q ss_pred EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 101 KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
....-....++..+.|.+... ...+++++.|.++++||++....... +.+++ .+.++.
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t-~~LPe--------------------RvYa~D 163 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVAT-LQLPE--------------------RVYAAD 163 (347)
T ss_pred eeeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeee-eeccc--------------------eeeehh
Confidence 655555556677888887643 55789999999999999997664322 11111 333333
Q ss_pred EeeCCCEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 181 FNKYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 181 ~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
. -..+++++..+..|.+|+++++.. ......+-.-.+++|+..++....+.|+-.|.+.|..+..+.
T Consensus 164 v--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~---------- 231 (347)
T KOG0647|consen 164 V--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN---------- 231 (347)
T ss_pred c--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC----------
Confidence 2 345789999999999999987654 233322446678999999998888999999999998732211
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccc--cc--eeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDS--IT--KMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG 334 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~--~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~ 334 (551)
...-..++.|... +. -..+++++|.|.-..|++++. ||++.+||-+ ...++..+.
T Consensus 232 -----------------~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs---DGtf~FWDkdar~kLk~s~~ 291 (347)
T KOG0647|consen 232 -----------------PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS---DGTFSFWDKDARTKLKTSET 291 (347)
T ss_pred -----------------ccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC---CceEEEecchhhhhhhccCc
Confidence 1122344444431 11 134569999998888999988 9999999999 777888888
Q ss_pred CCCceEEEEEecCCCeEEEEc
Q 008844 335 PKEALIDLAWHPVHPIIVSVS 355 (551)
Q Consensus 335 h~~~v~~l~~sp~~~~l~s~s 355 (551)
|..+|++.+|+.+|.++|-+.
T Consensus 292 ~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 292 HPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCCccceeEecCCCCEEEEEe
Confidence 999999999999999877654
No 78
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.2e-25 Score=195.24 Aligned_cols=260 Identities=18% Similarity=0.223 Sum_probs=203.5
Q ss_pred eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeC--CC
Q 008844 57 IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPL--SS 133 (551)
Q Consensus 57 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~--~~ 133 (551)
..+.+... ...|++|.|+++|.+|++++.|.+|+|||..+|+.+.++.... .+..++|.... ..++.++. |.
T Consensus 6 ~ak~f~~~--~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~---~~~i~sStk~d~ 80 (311)
T KOG1446|consen 6 PAKVFRET--NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS---NTVIHSSTKEDD 80 (311)
T ss_pred cccccccC--CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC---ceEEEccCCCCC
Confidence 34445443 6889999999999999999999999999999999999987664 44555555432 24555554 78
Q ss_pred CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec
Q 008844 134 APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV 213 (551)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 213 (551)
+|+..++.+.+..... .+|...|++++.+|-+..+++++.|++|++||++..++...+..
T Consensus 81 tIryLsl~dNkylRYF--------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYF--------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred ceEEEEeecCceEEEc--------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 9999999998876653 34555999999999999999999999999999998888777643
Q ss_pred cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee
Q 008844 214 SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293 (551)
Q Consensus 214 ~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 293 (551)
.+. ..++|+|.|-++|++.....|+|||++.- +..+...+.-.. -...
T Consensus 141 ~~~---pi~AfDp~GLifA~~~~~~~IkLyD~Rs~---------------------------dkgPF~tf~i~~--~~~~ 188 (311)
T KOG1446|consen 141 SGR---PIAAFDPEGLIFALANGSELIKLYDLRSF---------------------------DKGPFTTFSITD--NDEA 188 (311)
T ss_pred CCC---cceeECCCCcEEEEecCCCeEEEEEeccc---------------------------CCCCceeEccCC--CCcc
Confidence 322 34789999999999988889999993321 112222222111 2245
Q ss_pred eeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCce---EEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 294 HWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEAL---IDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 294 ~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v---~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
.|+.+.|||||++|+.++. .+.+++.|.- |..+..+.++...- ...+|.|+++++++++.||+|.+|++.++.
T Consensus 189 ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred ceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 6889999999999999998 8999999998 99999998876543 678899999999999999999999999887
Q ss_pred cceeecC
Q 008844 370 NWSAFAP 376 (551)
Q Consensus 370 ~~~~~sp 376 (551)
....+.+
T Consensus 266 ~v~~~~~ 272 (311)
T KOG1446|consen 266 KVAVLRG 272 (311)
T ss_pred EeeEecC
Confidence 6554443
No 79
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=225.47 Aligned_cols=242 Identities=12% Similarity=0.213 Sum_probs=172.7
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCC-CCEEEEEeCCCeEEEEeccCCc--------eeeEeecccccccEEEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRR-GTLLAAGCSDGSCVIWDFETRG--------IAKELRDKECVAAITSV 73 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~d-g~~latg~~dg~I~iwd~~~~~--------~~~~~~~~~h~~~V~~l 73 (551)
++||+.........+ ..|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. .+..+.+ |...|.++
T Consensus 56 I~L~~~~r~~~v~~L--~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g--H~~~V~sV 131 (568)
T PTZ00420 56 IRLENQMRKPPVIKL--KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG--HKKKISII 131 (568)
T ss_pred EEeeecCCCceEEEE--cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec--CCCcEEEE
Confidence 456665443322223 348899999999997 7899999999999999997643 2234444 58999999
Q ss_pred EecCCCCE-EEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeecccc
Q 008844 74 CWSKYGHR-ILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAV 152 (551)
Q Consensus 74 ~~s~~g~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 152 (551)
+|+|++.. |++++.|++|+|||+.++..+..+..+.
T Consensus 132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~------------------------------------------- 168 (568)
T PTZ00420 132 DWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPK------------------------------------------- 168 (568)
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCC-------------------------------------------
Confidence 99998875 4688999999999999887654443111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEE-----EEeeC
Q 008844 153 PDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNI-----VFSRN 227 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l-----~~s~~ 227 (551)
.|.+++|+++|.+|++++.|+.|+|||+++++.+..+. .|.+.+... .|+++
T Consensus 169 ----------------------~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 169 ----------------------KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred ----------------------cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEeeeEcCC
Confidence 67899999999999999999999999999999888776 676654332 34578
Q ss_pred CCEEEEeeCCC----eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC
Q 008844 228 GQYLLTNSNDR----TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD 303 (551)
Q Consensus 228 g~~l~t~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d 303 (551)
+.+|++++.|+ +|+|||+... ..++..+. +......+ ......++
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~----------------------------~~pl~~~~-ld~~~~~L--~p~~D~~t 274 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNT----------------------------TSALVTMS-IDNASAPL--IPHYDEST 274 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCC----------------------------CCceEEEE-ecCCccce--EEeeeCCC
Confidence 88999988764 7999993211 11222221 11111100 02223556
Q ss_pred CCEEEEeeccCCcceEEEEecC-CceeEEEec--CCCceEEEEEecCCC
Q 008844 304 GEWVIAGSASKGEHKIYIWDRA-GYLVKILEG--PKEALIDLAWHPVHP 349 (551)
Q Consensus 304 g~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~--h~~~v~~l~~sp~~~ 349 (551)
|.++++|+. |+.|++|++. +. +..+.. +..++..++|.|...
T Consensus 275 g~l~lsGkG---D~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 275 GLIYLIGKG---DGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CCEEEEEEC---CCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 899999988 9999999998 53 232322 557889999999754
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=213.17 Aligned_cols=258 Identities=16% Similarity=0.274 Sum_probs=209.5
Q ss_pred cccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC-CCEE
Q 008844 4 PIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY-GHRI 82 (551)
Q Consensus 4 ~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~-g~~l 82 (551)
.|++..+......+.. ....|.++.|-.||++||+|...|.|+|||+.+...++.+..| ..+|..+.|+|. +..|
T Consensus 51 qly~~~~~~~~k~~sr--Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah--~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 51 QLYSSVTRSVRKTFSR--FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH--QAPVHVTKFSPQDNTML 126 (487)
T ss_pred EEEecchhhhhhhHHh--hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc--cCceeEEEecccCCeEE
Confidence 3444444433333333 3467899999999999999999999999998887788888776 999999999995 5677
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
++|+.|+.+++||+.+......+..|.+
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~~htD---------------------------------------------------- 154 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELSGHTD---------------------------------------------------- 154 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEecCCcc----------------------------------------------------
Confidence 8888899999999988875445554443
Q ss_pred CCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCC-cEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSN-QIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
.|.|.+|+|.. .++++|+.||.|++||+++. ..+..+ .|..+|..+.+-|.|..|++++ ...|
T Consensus 155 ------------YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAg-Gn~v 219 (487)
T KOG0310|consen 155 ------------YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAG-GNSV 219 (487)
T ss_pred ------------eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcC-CCeE
Confidence 67788888765 58899999999999999988 445555 8999999999999999998885 4689
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
++||+.. +++.+.....|...|+ |+++..++..|++|+- |+.|+
T Consensus 220 kVWDl~~----------------------------G~qll~~~~~H~KtVT-----cL~l~s~~~rLlS~sL---D~~VK 263 (487)
T KOG0310|consen 220 KVWDLTT----------------------------GGQLLTSMFNHNKTVT-----CLRLASDSTRLLSGSL---DRHVK 263 (487)
T ss_pred EEEEecC----------------------------CceehhhhhcccceEE-----EEEeecCCceEeeccc---ccceE
Confidence 9999322 2445555556888898 8999999999999999 99999
Q ss_pred EEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 321 IWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 321 iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+|++. .+.+..+. -.++|.+++.+|++..++.|..+|.+.+=+....+
T Consensus 264 Vfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 264 VFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred EEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 99988 77888776 46899999999999999999999998887555443
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=9.9e-26 Score=193.37 Aligned_cols=259 Identities=16% Similarity=0.233 Sum_probs=212.7
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE--EcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI--VLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLS 141 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~ 141 (551)
+|.+.|.+++|+.+|..|++|+.|+++.+|++...+..... .+|. .+..++|+|.. +.++++++.+..+++||++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~--~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH--PDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC--CcceEEecCCceEEEEEec
Confidence 45899999999999999999999999999999877554433 3333 57788888854 5689999999999999999
Q ss_pred CCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEE
Q 008844 142 TGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKN 221 (551)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 221 (551)
.+++........ .-.-++|+|+|.++++++.|..|.++|.++.+.+... .....+..
T Consensus 96 ~~k~~~~i~~~~---------------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne 152 (313)
T KOG1407|consen 96 SGKCTARIETKG---------------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNE 152 (313)
T ss_pred cCcEEEEeeccC---------------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeee
Confidence 998765432221 3456889999999999999999999999999887776 45677888
Q ss_pred EEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 222 IVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 222 l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
++|+.++.+++.....|+|.|.. ....+.+..+..|..... ++.|+
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILs-----------------------------ypsLkpv~si~AH~snCi-----cI~f~ 198 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILS-----------------------------YPSLKPVQSIKAHPSNCI-----CIEFD 198 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEe-----------------------------ccccccccccccCCcceE-----EEEEC
Confidence 99997777777777789999987 122455677777775544 88999
Q ss_pred CCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc-c--------
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN-W-------- 371 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~-~-------- 371 (551)
|+|+|+|+|+. |..+.+||++ --+++.+.-+.-+|..|.|+.+|++||++|.|..|-|=.++++.. |
T Consensus 199 p~GryfA~GsA---DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t 275 (313)
T KOG1407|consen 199 PDGRYFATGSA---DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPT 275 (313)
T ss_pred CCCceEeeccc---cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCc
Confidence 99999999999 9999999999 888999999999999999999999999999999998888877653 2
Q ss_pred --eeecCCcceeceec
Q 008844 372 --SAFAPDFKELEENE 385 (551)
Q Consensus 372 --~~~spd~~~l~~~~ 385 (551)
.+|.|.--.|+...
T Consensus 276 ~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 276 FTVAWHPKRPLLAYAC 291 (313)
T ss_pred eeEEecCCCceeeEEe
Confidence 26777766666443
No 82
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=216.62 Aligned_cols=193 Identities=19% Similarity=0.225 Sum_probs=145.4
Q ss_pred CCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee---CCCEEEEeeCCCeEEEEeCcCC
Q 008844 172 PPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR---NGQYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 172 ~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~---~g~~l~t~s~Dg~i~iwd~~~~ 248 (551)
....+.+++.+|+|++|++|..-|+|+||++...+....+. .|...|.|+.|+. ..++||+++.|+.|+|||+-..
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 34589999999999999999999999999999988877776 8999999999985 2468999999999999994322
Q ss_pred ccccchhhhhhhccCCCC-------Cc-ceeeeeccce------------eeeeecccccccceeeeeeeEEcCCCCEEE
Q 008844 249 LKNGLEALVDIEKGIAEP-------NG-IEKMKMVGSK------------CLALFREFQDSITKMHWKAPCFSGDGEWVI 308 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~ 308 (551)
...+..+.+..... ++ ..++...+.. ....+..|...+....+..+...|..++++
T Consensus 537 ----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 537 ----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred ----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 12222222211111 11 0111111111 122333344444444555899999999999
Q ss_pred EeeccCCcceEEEEecC-CceeEEEec---CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 309 AGSASKGEHKIYIWDRA-GYLVKILEG---PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 309 ~gs~~~~dg~I~iwd~~-~~~~~~l~~---h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
+++. |..|+||++. |++++.|++ |.+....+...|.|.|||+...|.++.++|..++++..
T Consensus 613 t~cQ---Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 613 TVCQ---DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred EEec---ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 9999 9999999999 999999986 56778899999999999999999999999999988654
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=211.10 Aligned_cols=256 Identities=14% Similarity=0.225 Sum_probs=209.0
Q ss_pred CccccccCCCC--ccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCC
Q 008844 2 NAPIIDPLQGD--FPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 2 nl~lwd~~~~~--~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g 79 (551)
+|.+|+..... +..+|.. ..+.|+++.|.+++.++++++.|+.+++|++...+...+|.+| ...|+++.|....
T Consensus 198 ~Ik~W~v~~~k~~~~~tLaG--s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH--tdkVt~ak~~~~~ 273 (459)
T KOG0288|consen 198 IIKLWNVLGEKSELISTLAG--SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH--TDKVTAAKFKLSH 273 (459)
T ss_pred hhhhhhcccchhhhhhhhhc--cCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccc--ccceeeehhhccc
Confidence 46789887665 3333333 4478999999999999999999999999999999999999986 9999999999877
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 80 HRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
..+++|+.|.+|++||+..+.+..++........+...+ ..++++..|..|++||++...........
T Consensus 274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g------- 341 (459)
T KOG0288|consen 274 SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPLG------- 341 (459)
T ss_pred cceeeccccchhhhhhhhhhheeccccccccccceEecc-----eeeeecccccceEEEeccCCceeeEeecC-------
Confidence 679999999999999999999988887777666665553 36888999999999999988765432111
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc---CccceEEEEEeeCCCEEEEeeC
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS---GAAVIKNIVFSRNGQYLLTNSN 236 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~l~~s~~g~~l~t~s~ 236 (551)
..|+++..+++|..|++.+.|.++.++|+++......+... .....+.+.|||++.|+++|+.
T Consensus 342 --------------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 342 --------------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred --------------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 18999999999999999999999999999999987777432 2345889999999999999999
Q ss_pred CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCc
Q 008844 237 DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGE 316 (551)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~d 316 (551)
||.|+||++. ++++...+...... ..+++++|+|.|.+|++++. +
T Consensus 408 dgsv~iW~v~-----------------------------tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk---~ 452 (459)
T KOG0288|consen 408 DGSVYIWSVF-----------------------------TGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADK---Q 452 (459)
T ss_pred CCcEEEEEcc-----------------------------CceEEEEeccCCCC---cceEEEEEcCCCchhhcccC---C
Confidence 9999999933 24555444443333 02339999999999999999 8
Q ss_pred ceEEEE
Q 008844 317 HKIYIW 322 (551)
Q Consensus 317 g~I~iw 322 (551)
+.+.+|
T Consensus 453 ~~v~lW 458 (459)
T KOG0288|consen 453 KAVTLW 458 (459)
T ss_pred cceEec
Confidence 999998
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=8.3e-27 Score=198.58 Aligned_cols=212 Identities=19% Similarity=0.300 Sum_probs=187.6
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeEeecccccccEEEEEecCCCCE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG-IAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
..|||..+|. .|..+.|.--|.+++|+.|.++|++|+.+..+||||++... ....+.+| .+.|..+-|....+.
T Consensus 83 akvw~a~tgd---elhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh--tg~Ir~v~wc~eD~~ 157 (334)
T KOG0278|consen 83 AKVWDAVTGD---ELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH--TGGIRTVLWCHEDKC 157 (334)
T ss_pred hhhhhhhhhh---hhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC--CCcceeEEEeccCce
Confidence 4689999995 55666788899999999999999999999999999998644 45566655 999999999998899
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 161 (551)
|++++.|++|++||.++|..++++.+..++.++.+++++ .+++....+.|.+||..+-.....
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG----~ilTia~gssV~Fwdaksf~~lKs------------- 220 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG----RILTIAYGSSVKFWDAKSFGLLKS------------- 220 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC----CEEEEecCceeEEeccccccceee-------------
Confidence 999999999999999999999999999999999999987 488888999999999887654322
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEE
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIR 241 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~ 241 (551)
...+..|.+..++|+...+++|+.|+.++.||..++..+..+..+|.++|.|+.|+|+|...++|+.||+||
T Consensus 221 --------~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 221 --------YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred --------ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEE
Confidence 112337889999999999999999999999999999998887558999999999999999999999999999
Q ss_pred EEe
Q 008844 242 IYD 244 (551)
Q Consensus 242 iwd 244 (551)
||.
T Consensus 293 lWQ 295 (334)
T KOG0278|consen 293 LWQ 295 (334)
T ss_pred EEE
Confidence 998
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=7.4e-26 Score=229.88 Aligned_cols=246 Identities=17% Similarity=0.290 Sum_probs=198.9
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC------------------CceeeEeecccccccEEEEEecCCCCEE
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET------------------RGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~------------------~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
.|.+.|+|+.|+|||.+||+|+.|+.|.||.... .+.+..+.+| ...|..++|+|++.+|
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H--~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH--DSDVLDVNWSPDDSLL 144 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC--CCccceeccCCCccEE
Confidence 3779999999999999999999999999999872 1245666665 9999999999999999
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
++++.|++|.|||..+...+..+..|..
T Consensus 145 vS~s~DnsViiwn~~tF~~~~vl~~H~s---------------------------------------------------- 172 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTFELLKVLRGHQS---------------------------------------------------- 172 (942)
T ss_pred EEecccceEEEEccccceeeeeeecccc----------------------------------------------------
Confidence 9999999999999999998888887764
Q ss_pred CCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-----cCccceEEEEEeeCCCEEEEeeC-
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-----SGAAVIKNIVFSRNGQYLLTNSN- 236 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~~l~~s~~g~~l~t~s~- 236 (551)
.|-.+.|.|-|+||++-+.|++|+||.+....+...+.. .....+..+.|+|||++|++...
T Consensus 173 ------------~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 173 ------------LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred ------------cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 677889999999999999999999999877656554432 23466889999999999998643
Q ss_pred ---CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-----CCC---
Q 008844 237 ---DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-----DGE--- 305 (551)
Q Consensus 237 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-----dg~--- 305 (551)
-.++.|.+ -.+.++-..+-+|..++. .+.|+| ..+
T Consensus 241 n~~~~~~~Iie-----------------------------R~tWk~~~~LvGH~~p~e-----vvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 241 NGGKSTIAIIE-----------------------------RGTWKVDKDLVGHSAPVE-----VVRFNPKLFERNNKNGT 286 (942)
T ss_pred cCCcceeEEEe-----------------------------cCCceeeeeeecCCCceE-----EEEeChHHhccccccCC
Confidence 33566666 122444566778888887 677776 111
Q ss_pred ---------EEEEeeccCCcceEEEEecC-CceeEEE-ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 306 ---------WVIAGSASKGEHKIYIWDRA-GYLVKIL-EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 306 ---------~l~~gs~~~~dg~I~iwd~~-~~~~~~l-~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
.+|+|+. |++|-||... -+++... .-....|.+|+|+|||-.|+.||.||+|.+..++..+
T Consensus 287 ~~~~~~~y~i~AvgSq---DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQ---DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ccCCCcceEEEEEecC---CccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 5778888 9999999998 5544433 3345789999999999999999999999999987644
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4e-25 Score=204.05 Aligned_cols=285 Identities=14% Similarity=0.142 Sum_probs=216.5
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeE-e-------------ecc--cccccEEEEEecCCCCEEEE
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKE-L-------------RDK--ECVAAITSVCWSKYGHRILV 84 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~-~-------------~~~--~h~~~V~~l~~s~~g~~l~s 84 (551)
.|+-+|.|++++|++.++++++.+|+|.-|++.++..... + ..+ .|...|.+++.++||+||++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 4888999999999999999999999999999988764311 1 111 56889999999999999999
Q ss_pred EeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCC
Q 008844 85 SAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSS 163 (551)
Q Consensus 85 ~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 163 (551)
|+.|..|.||+.++.+.++.+..|.. +.+++|.-. ...+++++.|..+.+|++.........
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---t~~lys~s~Drsvkvw~~~~~s~vetl-------------- 282 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---TSELYSASADRSVKVWSIDQLSYVETL-------------- 282 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecC---ccceeeeecCCceEEEehhHhHHHHHH--------------
Confidence 99999999999999999999888865 667777755 346999999999999999876643322
Q ss_pred CCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 164 RNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
.+|...|..+.....++.+-+|+.|.++++|++.....+... ++.+.+.|++|-. ..++++|+.+|.|.+|
T Consensus 283 ------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifr--g~~~sidcv~~In-~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 283 ------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFR--GGEGSIDCVAFIN-DEHFVSGSDNGSIALW 353 (479)
T ss_pred ------hCCccceeeechhcccceEEeccccceeEEEeccccceeeee--CCCCCeeeEEEec-ccceeeccCCceEEEe
Confidence 234447888888888888889999999999999544433333 7888999999984 4579999999999999
Q ss_pred eCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc------cccce-eeeeeeEEcCCCCEEEEeeccCCc
Q 008844 244 DNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ------DSITK-MHWKAPCFSGDGEWVIAGSASKGE 316 (551)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~-~~~~~~~~s~dg~~l~~gs~~~~d 316 (551)
++.... ++.+...-. .+++. .-+++++..|...++|+|+. +
T Consensus 354 s~~KKk-----------------------------plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~---~ 401 (479)
T KOG0299|consen 354 SLLKKK-----------------------------PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW---S 401 (479)
T ss_pred eecccC-----------------------------ceeEeeccccccCCccccccccceeeeEecccCceEEecCC---C
Confidence 943221 111111000 11111 12248999999999999999 9
Q ss_pred ceEEEEecC-C----ceeEEEecCCCceEEEEEecCCCeEE-EEcCCCcEEEEe
Q 008844 317 HKIYIWDRA-G----YLVKILEGPKEALIDLAWHPVHPIIV-SVSLTGWVYIWA 364 (551)
Q Consensus 317 g~I~iwd~~-~----~~~~~l~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iW~ 364 (551)
|+|++|-+. | .++..+. -.+.|++|+|+++|..|+ .++....+-=|-
T Consensus 402 G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 402 GCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceee
Confidence 999999998 5 3444444 467899999999999554 445544443343
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4e-26 Score=212.21 Aligned_cols=241 Identities=13% Similarity=0.178 Sum_probs=192.4
Q ss_pred cceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 23 HGVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 23 ~~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
+..|++|+|||... -+|+.+ .-.+.||+..+....+++.-. ...|.+++|-.||++|+.|...|.|+|+|+.+...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srF--k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRF--KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhh--ccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 57899999999654 244433 357999999988888877665 78999999999999999999999999999665444
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
++.+..|.. ++..+.|
T Consensus 103 LR~~~ah~a----------------------------------------------------------------pv~~~~f 118 (487)
T KOG0310|consen 103 LRQLYAHQA----------------------------------------------------------------PVHVTKF 118 (487)
T ss_pred HHHHhhccC----------------------------------------------------------------ceeEEEe
Confidence 444444432 6667777
Q ss_pred eeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 182 NKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 182 s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
+|.+ ..+++|+.|+.+++||+.+......+. +|...|.+.+|+|. +.+++||+.||.||+||+...
T Consensus 119 ~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~----------- 186 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL----------- 186 (487)
T ss_pred cccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-----------
Confidence 7766 566778888999999999988744454 99999999999996 457899999999999993221
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEEEecCCC
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPKE 337 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~ 337 (551)
+ .....-.|..+|. .+.|-|.|..||+++. ..|+|||+. ++++..+..|..
T Consensus 187 ----------------~--~~v~elnhg~pVe-----~vl~lpsgs~iasAgG----n~vkVWDl~~G~qll~~~~~H~K 239 (487)
T KOG0310|consen 187 ----------------T--SRVVELNHGCPVE-----SVLALPSGSLIASAGG----NSVKVWDLTTGGQLLTSMFNHNK 239 (487)
T ss_pred ----------------C--ceeEEecCCCcee-----eEEEcCCCCEEEEcCC----CeEEEEEecCCceehhhhhcccc
Confidence 1 1222234666776 8899999999999986 789999999 566666666999
Q ss_pred ceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 338 ALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
.|+|+++..++..|+|+|.|+.|++|++.+.+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceE
Confidence 99999999999999999999999999977655
No 88
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=4.7e-26 Score=211.80 Aligned_cols=286 Identities=12% Similarity=0.185 Sum_probs=234.2
Q ss_pred ceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC---ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCE
Q 008844 15 EVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR---GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSL 91 (551)
Q Consensus 15 ~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~---~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i 91 (551)
+.+..+.|...|.++.+|...++++||+. |.|+|||+... ..+..+....-..-|.++.++|||+.|++|+.-.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 34555667788888999999999999975 78999999743 234444433335779999999999999999999999
Q ss_pred EEEEcCCCeEEEEEEcCC---CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCC
Q 008844 92 TLWDVLKGEKITRIVLQQ---TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
.|||+............. ..+.++.+|+.. ++++|+.+|.|.|||+.+......
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDak---vcFsccsdGnI~vwDLhnq~~Vrq-------------------- 546 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAK---VCFSCCSDGNIAVWDLHNQTLVRQ-------------------- 546 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccc---eeeeeccCCcEEEEEcccceeeec--------------------
Confidence 999998765444333332 356778888854 899999999999999998776533
Q ss_pred CCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCC
Q 008844 169 DGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~ 248 (551)
..+|...+.|+.++++|..|.+|+-|.+|+.||+++++.+... .....|.++.++|++.+|++|-.++.+.|..+.
T Consensus 547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~s-- 622 (705)
T KOG0639|consen 547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-- 622 (705)
T ss_pred ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecC--
Confidence 3445558999999999999999999999999999999877665 557889999999999999999999999888732
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY 327 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~ 327 (551)
......+..|..-|. ++.|++.|+|+++.+. |+.+..|.+. |.
T Consensus 623 ----------------------------kp~kyqlhlheScVL-----SlKFa~cGkwfvStGk---DnlLnawrtPyGa 666 (705)
T KOG0639|consen 623 ----------------------------KPEKYQLHLHESCVL-----SLKFAYCGKWFVSTGK---DNLLNAWRTPYGA 666 (705)
T ss_pred ----------------------------CccceeecccccEEE-----EEEecccCceeeecCc---hhhhhhccCcccc
Confidence 222455667777777 8899999999999999 9999999999 88
Q ss_pred eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 328 LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 328 ~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
.+...+ -..+|+++..+.+.++|+||+.|....||.+
T Consensus 667 siFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 SIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 777665 3578999999999999999999988888875
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-25 Score=192.17 Aligned_cols=241 Identities=18% Similarity=0.271 Sum_probs=187.2
Q ss_pred EEEEEcCC-CCEEEEEe-------CCCeEEEEeccCCceeeEeecccccccEEEEEecCC-CCEEEEEeCCCCEEEEEcC
Q 008844 27 KCIAFNRR-GTLLAAGC-------SDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY-GHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 27 ~~l~fs~d-g~~latg~-------~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~vwd~~ 97 (551)
.++.|||- .++||++. ..|++.|.++...+-+..+....-...+..++|+++ .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 67889983 23444332 268999999975444444443334688999999986 5678889999999999953
Q ss_pred CC-eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 98 KG-EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 98 ~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
.. .++..++ +|...|
T Consensus 92 ~~s~Pi~~~k----------------------------------------------------------------EH~~EV 107 (311)
T KOG0277|consen 92 MPSKPIHKFK----------------------------------------------------------------EHKREV 107 (311)
T ss_pred CCCcchhHHH----------------------------------------------------------------hhhhhe
Confidence 22 2233332 233377
Q ss_pred eEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 177 TAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 177 ~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.++.|++-. ..+++++.||+|++|+....+.+.++. +|...|...+|+|. +..+++++.|+++++||+..+
T Consensus 108 ~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~------ 180 (311)
T KOG0277|consen 108 YSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP------ 180 (311)
T ss_pred EEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC------
Confidence 788887654 567888999999999999999999987 89999999999995 678999999999999994433
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC--CceeEE
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA--GYLVKI 331 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~ 331 (551)
++.+. +..|...+. ++.|+. +.+.|++|+. |+.|++||++ ..++..
T Consensus 181 ----------------------gk~~~-i~ah~~Eil-----~cdw~ky~~~vl~Tg~v---d~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 181 ----------------------GKFMS-IEAHNSEIL-----CCDWSKYNHNVLATGGV---DNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred ----------------------CceeE-EEeccceeE-----eecccccCCcEEEecCC---CceEEEEehhhcccccee
Confidence 23233 666777777 777776 5677888888 9999999999 888999
Q ss_pred EecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCCC
Q 008844 332 LEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 332 l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~~ 369 (551)
|.+|.-.|..+.|||... +||+++.|-+++||+...+.
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 999999999999999875 89999999999999987543
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.9e-25 Score=206.33 Aligned_cols=257 Identities=20% Similarity=0.353 Sum_probs=193.0
Q ss_pred ceeecccccceEEEEEEcCCC-CEEEEEeCCCeEEEEeccCCce--------ee--EeecccccccEEEEEecCC-CCEE
Q 008844 15 EVIEEYLEHGVMKCIAFNRRG-TLLAAGCSDGSCVIWDFETRGI--------AK--ELRDKECVAAITSVCWSKY-GHRI 82 (551)
Q Consensus 15 ~~l~~~~h~~~V~~l~fs~dg-~~latg~~dg~I~iwd~~~~~~--------~~--~~~~~~h~~~V~~l~~s~~-g~~l 82 (551)
++...+.|.+.|+.+.+-|.. .++|+++..+.|.|||.....- .. .+.+| ...-++|+|++. .-+|
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH--~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGH--EKEGYGLSWNRQQEGTL 193 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEee--cccccccccccccceeE
Confidence 444556788999999999965 5777788899999999864321 11 45444 777888999985 3478
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
++++.|++|++||+......... .. |
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~------~~----p-------------------------------------------- 219 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKV------VD----P-------------------------------------------- 219 (422)
T ss_pred eeccCCCcEEEEeccccccCCcc------cc----c--------------------------------------------
Confidence 99999999999999754321000 00 0
Q ss_pred CCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCC--CcEEEeeeccCccceEEEEEeeC-CCEEEEeeCCC
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKS--NQIRALVPVSGAAVIKNIVFSRN-GQYLLTNSNDR 238 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~l~~s~~-g~~l~t~s~Dg 238 (551)
+.....|...|..++|++-. .+|++.+.|+.+.|||+++ .++..... .|.+.|.|++|+|- +..||||+.|+
T Consensus 220 ---~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 220 ---KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAFNPFNEFILATGSADK 295 (422)
T ss_pred ---eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEeCCCCCceEEeccCCC
Confidence 00011223367778888765 6788889999999999995 33344443 89999999999995 56789999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCC-EEEEeeccCCcc
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGE-WVIAGSASKGEH 317 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~-~l~~gs~~~~dg 317 (551)
+|++||++.- ..++..+.+|.+.|. .+.|||... .||+++. |+
T Consensus 296 tV~LwDlRnL----------------------------~~~lh~~e~H~dev~-----~V~WSPh~etvLASSg~---D~ 339 (422)
T KOG0264|consen 296 TVALWDLRNL----------------------------NKPLHTFEGHEDEVF-----QVEWSPHNETVLASSGT---DR 339 (422)
T ss_pred cEEEeechhc----------------------------ccCceeccCCCcceE-----EEEeCCCCCceeEeccc---CC
Confidence 9999993321 346888999999998 889999655 5666666 99
Q ss_pred eEEEEecC--Cc-------------eeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCC
Q 008844 318 KIYIWDRA--GY-------------LVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 318 ~I~iwd~~--~~-------------~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~ 367 (551)
.+.|||+. |+ ++.+-.||...|..+.|+|..+ .|+|++.|+.+.||.+..
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99999997 43 3466778999999999999998 567788899999999863
No 91
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1e-23 Score=203.69 Aligned_cols=279 Identities=14% Similarity=0.138 Sum_probs=202.4
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE-EEEeCCCCEEEEEcCCCeEEEEEEcCCCeeE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI-LVSAADKSLTLWDVLKGEKITRIVLQQTPLQ 113 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 113 (551)
++++++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~---~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG---QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC---CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccE
Confidence 457889999999999999999988888654 346789999999877 5566789999999999988877766666777
Q ss_pred EEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec
Q 008844 114 ARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS 193 (551)
Q Consensus 114 ~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~ 193 (551)
+.++|++. .+++++..++.+.+||+.+........ ....+.+++|+|+|.+++++..
T Consensus 78 ~~~~~~g~--~l~~~~~~~~~l~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 78 FALHPNGK--ILYIANEDDNLVTVIDIETRKVLAEIP---------------------VGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EEECCCCC--EEEEEcCCCCeEEEEECCCCeEEeEee---------------------CCCCcceEEECCCCCEEEEEec
Confidence 88888764 345566678999999998865432110 0014678999999999999887
Q ss_pred Cc-eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEeCcCCccccchhhhhhhccCCCCCccee
Q 008844 194 KG-EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEK 271 (551)
Q Consensus 194 dg-~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (551)
++ .+.+||..+++....+. ....+.+++|+|++++|+++ ..++.|++||+..
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~------------------------ 188 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT------------------------ 188 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc------------------------
Confidence 65 56788999887766553 23445789999999988655 4699999999321
Q ss_pred eeeccceeeeeeccccccc--ceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCC
Q 008844 272 MKMVGSKCLALFREFQDSI--TKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVH 348 (551)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~ 348 (551)
...+..+..+...+ .......++|+|+|++++++... ++.|.+||+. ++.+..+. +...+.+++|+|++
T Consensus 189 -----~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g 260 (300)
T TIGR03866 189 -----RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--ANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDE 260 (300)
T ss_pred -----ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC--CCeEEEEECCCCcEEEEEE-eCCCcceEEECCCC
Confidence 11122111110000 01111267899999987655432 5679999999 77776654 34579999999999
Q ss_pred CeEEEE-cCCCcEEEEecCCCCccee
Q 008844 349 PIIVSV-SLTGWVYIWAKDYTENWSA 373 (551)
Q Consensus 349 ~~l~s~-s~dg~i~iW~~~~~~~~~~ 373 (551)
.+|+++ +.+|.|+|||+.+++....
T Consensus 261 ~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 261 KYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 999886 4599999999998765433
No 92
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=9.2e-25 Score=190.47 Aligned_cols=291 Identities=16% Similarity=0.245 Sum_probs=223.2
Q ss_pred ccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCc-------ee------eEeecccccccEEEEEecC-CCCEEEEEe
Q 008844 22 EHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRG-------IA------KELRDKECVAAITSVCWSK-YGHRILVSA 86 (551)
Q Consensus 22 h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~-------~~------~~~~~~~h~~~V~~l~~s~-~g~~l~s~s 86 (551)
|.+.|+++.+.+ .|+|+++|+.||.|.+||++... .. ..-...+|...|.++.|-| |.-.+.+++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 789999999987 58999999999999999997532 11 1111235788999999999 555777888
Q ss_pred CCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 87 ADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 87 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
.|.+++|||..+-+....|.....++.-+++|-...+.+++++..+.++++.|+..|...-.
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~------------------ 183 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT------------------ 183 (397)
T ss_pred ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee------------------
Confidence 89999999999999999999999999999999877778888999999999999999876432
Q ss_pred CCCCCCCCCceEEEEeeCCCE-EEEEecCceEEEEECCCC-cEEEee-------------eccCccceEEEEEeeCCCEE
Q 008844 167 YSDGTPPFTPTAACFNKYGDL-VYVGNSKGEILVIDHKSN-QIRALV-------------PVSGAAVIKNIVFSRNGQYL 231 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~-l~~g~~dg~i~i~d~~~~-~~~~~~-------------~~~~~~~i~~l~~s~~g~~l 231 (551)
..+|...|.++.|+|...+ |++|+.||.|++||++.. .+...+ ...|.+.|..++|+.++.+|
T Consensus 184 --LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 184 --LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred --eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 3445569999999999865 578899999999999854 222222 22577889999999999999
Q ss_pred EEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec--ccccccceeeeeeeEEcCCCCEEEE
Q 008844 232 LTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR--EFQDSITKMHWKAPCFSGDGEWVIA 309 (551)
Q Consensus 232 ~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~s~dg~~l~~ 309 (551)
++++.|..+++|+..... + .+..+- .++..+ ...+ .+. +.+...++.
T Consensus 262 ~~~gtd~r~r~wn~~~G~-n---------------------------tl~~~g~~~~n~~~-~~~~-~~~-~~~s~vfv~ 310 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGR-N---------------------------TLREFGPIIHNQTT-SFAV-HIQ-SMDSDVFVL 310 (397)
T ss_pred hhccCccceEEeecccCc-c---------------------------cccccccccccccc-cceE-EEe-ecccceEEE
Confidence 999999999999932211 0 011100 011000 0000 112 233333444
Q ss_pred eeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 310 GSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 310 gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
--. ++.+.++++- |..++.+.+|-..|.+.++-|+-+.+.++..|+.|+.|.+.
T Consensus 311 ~p~---~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 311 FPN---DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred Eec---CCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 444 6889999999 99999999998899999999999999999999999999873
No 93
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.6e-24 Score=201.87 Aligned_cols=315 Identities=16% Similarity=0.226 Sum_probs=243.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC-----------ceeeE----------
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-----------GIAKE---------- 60 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~-----------~~~~~---------- 60 (551)
|+.||++.+.++.+... .|.+.|.+++.-.+|.+|- |+.|..|..||-.-. ..+++
T Consensus 268 ~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~v 344 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILV 344 (626)
T ss_pred eEEEEeCCCceEEeEee--ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEE
Confidence 67899998877766665 5999999999999998766 999999999983210 00110
Q ss_pred -----------------eecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCC
Q 008844 61 -----------------LRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTP 123 (551)
Q Consensus 61 -----------------~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 123 (551)
+...+|......++.+|+...|++++.|+.+++|+ ..+++.......+..++.|+|.+
T Consensus 345 GTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--- 419 (626)
T KOG2106|consen 345 GTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--- 419 (626)
T ss_pred eeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc---
Confidence 11124677889999999999999999999999999 77888888889999999999976
Q ss_pred cEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECC
Q 008844 124 SLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK 203 (551)
Q Consensus 124 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~ 203 (551)
.++++...|...+.|..+.....+... . .+++++.|+|+|.+||+|+.|+.|+||-+.
T Consensus 420 -~va~Gt~~G~w~V~d~e~~~lv~~~~d-~--------------------~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 420 -VVAVGTATGRWFVLDTETQDLVTIHTD-N--------------------EQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred -eEEEeeccceEEEEecccceeEEEEec-C--------------------CceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 789999999999999999666554433 1 189999999999999999999999999886
Q ss_pred CC-cEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee
Q 008844 204 SN-QIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL 282 (551)
Q Consensus 204 ~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (551)
.. .........+..+|+.+.|++|+++|.+.+.|-.|..|.. .. .......+.+...+..|..-
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~-~~--------------~~~~ts~kDvkW~t~~c~lG 542 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP-SE--------------CKQITSVKDVKWATYTCTLG 542 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc-cc--------------CcccceecceeeeeeEEEEE
Confidence 54 3444444355699999999999999999999999999961 00 01111122233333444333
Q ss_pred ecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC----CceeEEEecCCCceEEEEEecCCCeEEEEcCCC
Q 008844 283 FREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA----GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358 (551)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~----~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg 358 (551)
|..+. .-....++.++-+.+.+++|+|.. .|.|++|... ......+.+|..-|++++|.-....|++.+.|.
T Consensus 543 F~v~g-~s~~t~i~a~~rs~~~~~lA~gdd---~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~ 618 (626)
T KOG2106|consen 543 FEVFG-GSDGTDINAVARSHCEKLLASGDD---FGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDT 618 (626)
T ss_pred EEEec-ccCCchHHHhhhhhhhhhhhcccc---CceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCc
Confidence 33222 111223337788889999999999 8999999987 445677889999999999999989898888999
Q ss_pred cEEEEec
Q 008844 359 WVYIWAK 365 (551)
Q Consensus 359 ~i~iW~~ 365 (551)
.|..|++
T Consensus 619 Si~qW~l 625 (626)
T KOG2106|consen 619 SIMQWRL 625 (626)
T ss_pred eEEEEEe
Confidence 9999986
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.3e-24 Score=189.59 Aligned_cols=260 Identities=16% Similarity=0.174 Sum_probs=201.1
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
...|+++.|+|.+..|++++.||++++|++........+. |..++.+++|.+ ...+++|+.||.|+++|+.++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 4679999999999999999999999999999886665553 489999999997 457999999999999999887643
Q ss_pred EEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q 008844 103 TRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN 182 (551)
Q Consensus 103 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 182 (551)
..-. |...+.|+.++
T Consensus 89 ~igt-----------------------------------------------------------------h~~~i~ci~~~ 103 (323)
T KOG1036|consen 89 QIGT-----------------------------------------------------------------HDEGIRCIEYS 103 (323)
T ss_pred eecc-----------------------------------------------------------------CCCceEEEEee
Confidence 2222 22278888888
Q ss_pred eCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhcc
Q 008844 183 KYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKG 262 (551)
Q Consensus 183 ~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (551)
+-...+++|+.|++|++||.+.......+ .....|.++.. .|..|++|+.+..|.+||+..
T Consensus 104 ~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn--------------- 164 (323)
T KOG1036|consen 104 YEVGCVISGSWDKTIKFWDPRNKVVVGTF--DQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN--------------- 164 (323)
T ss_pred ccCCeEEEcccCccEEEEecccccccccc--ccCceEEEEec--cCCEEEEeecCceEEEEEccc---------------
Confidence 88889999999999999999986665555 34457877766 477899999999999999321
Q ss_pred CCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-C----ceeEEEecCC-
Q 008844 263 IAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-G----YLVKILEGPK- 336 (551)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~----~~~~~l~~h~- 336 (551)
+.........-.+.+..++++-|++.-.++++- +|.|.+=.++ . ..-..++.|.
T Consensus 165 -----------------~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi---eGRVavE~~d~s~~~~skkyaFkCHr~ 224 (323)
T KOG1036|consen 165 -----------------LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI---EGRVAVEYFDDSEEAQSKKYAFKCHRL 224 (323)
T ss_pred -----------------ccchhhhccccceeEEEEEEEecCCCceEEEee---cceEEEEccCCchHHhhhceeEEeeec
Confidence 111111112223445568999998888888888 8999886655 3 4445666665
Q ss_pred --------CceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce------------eecCCcceeceeceeeec
Q 008844 337 --------EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS------------AFAPDFKELEENEEYVER 390 (551)
Q Consensus 337 --------~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~------------~~spd~~~l~~~~~~~e~ 390 (551)
-+|++|+|||-...|||||.||.|.+||+.+.++.. +|+.||..|+-...|...
T Consensus 225 ~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye 298 (323)
T KOG1036|consen 225 SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYE 298 (323)
T ss_pred ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhh
Confidence 279999999999999999999999999998876443 677788888876666553
No 95
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.9e-25 Score=201.12 Aligned_cols=253 Identities=19% Similarity=0.250 Sum_probs=200.8
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe---EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEc
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE---KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDL 140 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~ 140 (551)
.|...|..+.||++|+|||+++.|.+..+|.+.... ...++.+|. ++..+.|+|+.. ++++|+.+..+.+||+
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr---yLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR---YLLACGFDEVLSLWDV 298 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC---eEEecCchHheeeccC
Confidence 459999999999999999999999999999876543 355555554 678899999965 8999999999999999
Q ss_pred CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceE
Q 008844 141 STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIK 220 (551)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~ 220 (551)
.+|......... +...+.+++|.|||..+++|+.|++|..||+.... ...........|.
T Consensus 299 ~tgd~~~~y~~~-------------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 299 DTGDLRHLYPSG-------------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVH 358 (519)
T ss_pred CcchhhhhcccC-------------------cCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeE
Confidence 999865432211 34489999999999999999999999999997654 3333333456799
Q ss_pred EEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEE
Q 008844 221 NIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCF 300 (551)
Q Consensus 221 ~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 300 (551)
+++.++||+++++.+.|..|++|+... ..+.. +-....+++ +.++
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~-----------------------------~~dr~-lise~~~it-----s~~i 403 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREA-----------------------------RVDRG-LISEEQPIT-----SFSI 403 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhh-----------------------------hhhhc-cccccCcee-----EEEE
Confidence 999999999999999999999998211 11111 222334455 8899
Q ss_pred cCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCc--eEEEEEecC-CCeEEEEcCCCcEEEEecCCCCcceeecC
Q 008844 301 SGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEA--LIDLAWHPV-HPIIVSVSLTGWVYIWAKDYTENWSAFAP 376 (551)
Q Consensus 301 s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~--v~~l~~sp~-~~~l~s~s~dg~i~iW~~~~~~~~~~~sp 376 (551)
|.+|+++++.-. +..|++||+. ..+++.+.||+.. |..-+|.-. ..++++||.|+.|+||+..++.....++.
T Consensus 404 S~d~k~~LvnL~---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 404 SKDGKLALVNLQ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred cCCCcEEEEEcc---cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 999999999998 8999999999 8899999999854 455556443 47999999999999999999887665555
Q ss_pred Cc
Q 008844 377 DF 378 (551)
Q Consensus 377 d~ 378 (551)
+.
T Consensus 481 Hs 482 (519)
T KOG0293|consen 481 HS 482 (519)
T ss_pred Cc
Confidence 44
No 96
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.7e-24 Score=212.57 Aligned_cols=250 Identities=15% Similarity=0.285 Sum_probs=195.8
Q ss_pred cccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC-ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC
Q 008844 19 EYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 19 ~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~ 97 (551)
.+.|...-+.|+|.|+|.+|++++.||.|++|+.... ....++..+ ...|.+++.. +.+|++|+.+++|.+|.+.
T Consensus 9 Ryaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~--g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS--GELVSSIACY--SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc--CceeEEEeec--ccceEEeeccceEEEeeCC
Confidence 3568888999999999999999999999999998765 444455433 7788888775 5589999999999999987
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
.+..-..+. +| ..++.
T Consensus 85 s~~~~~iL~--------Rf--------------------------------------------------------tlp~r 100 (933)
T KOG1274|consen 85 SGEEDTILA--------RF--------------------------------------------------------TLPIR 100 (933)
T ss_pred CCCccceee--------ee--------------------------------------------------------eccce
Confidence 765321111 00 01788
Q ss_pred EEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhh
Q 008844 178 AACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
+++|+.+|++++.|+.|-.|++.++........+. +|.++|.+|.|+|++.+||+.+.||.|++|++..
T Consensus 101 ~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~---------- 169 (933)
T KOG1274|consen 101 DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD---------- 169 (933)
T ss_pred EEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEEEEccc----------
Confidence 99999999999999999999999999888877776 9999999999999999999999999999999321
Q ss_pred hhhccCCCCCcceeeeeccceeeeeec---ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEe
Q 008844 258 DIEKGIAEPNGIEKMKMVGSKCLALFR---EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
..+...+. .-...+....++.++|+|+|..+++... ++.|.+|+.. +.....|.
T Consensus 170 -------------------~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 170 -------------------GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred -------------------chhhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCCceeheeec
Confidence 11111111 1111121223347899999777777777 8999999999 77777665
Q ss_pred c--CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 334 G--PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 334 ~--h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
. +...+..++|+|.|.|||+++.+|.|.|||+++.+
T Consensus 228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 4 44459999999999999999999999999999543
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=219.81 Aligned_cols=245 Identities=18% Similarity=0.239 Sum_probs=183.9
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe--------------------------------------------
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-------------------------------------------- 100 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-------------------------------------------- 100 (551)
.|.+.|.++.||+||+|||+||.|+.|+||.+....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 469999999999999999999999999999876500
Q ss_pred ----------------EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCC
Q 008844 101 ----------------KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSS 163 (551)
Q Consensus 101 ----------------~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 163 (551)
+++.+.+|. .+..+.|+-+ .++|+++.|.+++||++....+.....
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn----~fLLSSSMDKTVRLWh~~~~~CL~~F~------------- 407 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN----NFLLSSSMDKTVRLWHPGRKECLKVFS------------- 407 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC----CeeEeccccccEEeecCCCcceeeEEe-------------
Confidence 011111221 3455666654 489999999999999999888766543
Q ss_pred CCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 164 RNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
|..-|+|++|+|-. +||++|+-||.|+||++...+.+.-. .....|++++|.|+|++.++|+.+|.+++
T Consensus 408 --------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~--Dl~~lITAvcy~PdGk~avIGt~~G~C~f 477 (712)
T KOG0283|consen 408 --------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN--DLRDLITAVCYSPDGKGAVIGTFNGYCRF 477 (712)
T ss_pred --------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh--hhhhhheeEEeccCCceEEEEEeccEEEE
Confidence 33389999999965 99999999999999999998887666 44588999999999999999999999999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee--ccc-ccccceeeeeeeEEcCC-CCEEEEeeccCCcce
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF--REF-QDSITKMHWKAPCFSGD-GEWVIAGSASKGEHK 318 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~s~d-g~~l~~gs~~~~dg~ 318 (551)
|++..-. ......+..- +.- ...|+ .+.|.|. -..|++.+. |..
T Consensus 478 Y~t~~lk------------------------~~~~~~I~~~~~Kk~~~~rIT-----G~Q~~p~~~~~vLVTSn---DSr 525 (712)
T KOG0283|consen 478 YDTEGLK------------------------LVSDFHIRLHNKKKKQGKRIT-----GLQFFPGDPDEVLVTSN---DSR 525 (712)
T ss_pred EEccCCe------------------------EEEeeeEeeccCccccCceee-----eeEecCCCCCeEEEecC---CCc
Confidence 9932110 0000001000 000 11344 6777653 334556666 899
Q ss_pred EEEEecC-CceeEEEecCCC--ceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 319 IYIWDRA-GYLVKILEGPKE--ALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 319 I~iwd~~-~~~~~~l~~h~~--~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
|+|||.. ..++..|+|+.. .-....|+.||++|++++.|..|+||++...
T Consensus 526 IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 526 IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 9999998 888888988653 3466789999999999999999999998653
No 98
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=9.1e-25 Score=201.49 Aligned_cols=295 Identities=17% Similarity=0.216 Sum_probs=208.9
Q ss_pred ccceEEEEEEcCCC--CEEEEEeCCCeEEEEeccCCc--eeeEeecccccccEEEEEecCC-CCEEEEEeCCCCEEEEEc
Q 008844 22 EHGVMKCIAFNRRG--TLLAAGCSDGSCVIWDFETRG--IAKELRDKECVAAITSVCWSKY-GHRILVSAADKSLTLWDV 96 (551)
Q Consensus 22 h~~~V~~l~fs~dg--~~latg~~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~vwd~ 96 (551)
+.++|+|++|+|.. +++|+|..-|+|-+||+.+.+ .-..+.++.|..+|.+|.|+|. -..+++.+.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 67899999999965 588999999999999996322 2334445667999999999995 467899999999999999
Q ss_pred CCCeEEEEEEcCCC---eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQQT---PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 97 ~~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
+.+..-..+..... ...+.|+.. ...++++..-|.+.+||++++......+... .
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e---~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh-------------------~ 322 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAE---SRSVLFGDNVGNFNVIDLRTDGSEYENLRLH-------------------K 322 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCC---CccEEEeecccceEEEEeecCCccchhhhhh-------------------h
Confidence 87643333332111 223333333 2256666666699999999988755544433 2
Q ss_pred CCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEE---eeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCc
Q 008844 174 FTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRA---LVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPL 249 (551)
Q Consensus 174 ~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~---~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~ 249 (551)
..|++++++|.. .+|++++.|++++|||++.-.... .....|...|.+..|||.+-.|+|.+.|..|||||... .
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~-~ 401 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC-I 401 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc-c
Confidence 389999999988 678899999999999998643322 22238999999999999988899999999999999200 0
Q ss_pred cccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce
Q 008844 250 KNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL 328 (551)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~ 328 (551)
..... ....+..-..+...++.. ...|.|+..+|++|.. -..|-|+|-. ++.
T Consensus 402 sa~~~---------------------p~~~I~Hn~~t~RwlT~f---KA~W~P~~~li~vg~~---~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 402 SAKDE---------------------PLGTIPHNNRTGRWLTPF---KAAWDPDYNLIVVGRY---PRPIDVFDGNGGQM 454 (498)
T ss_pred cccCC---------------------ccceeeccCcccccccch---hheeCCCccEEEEecc---CcceeEEcCCCCEE
Confidence 00000 000011111111122211 5689999999999999 7789999999 777
Q ss_pred eEEEecCCC-ceEE-EEEecCCCeEEEEcC-CCcEEEEecC
Q 008844 329 VKILEGPKE-ALID-LAWHPVHPIIVSVSL-TGWVYIWAKD 366 (551)
Q Consensus 329 ~~~l~~h~~-~v~~-l~~sp~~~~l~s~s~-dg~i~iW~~~ 366 (551)
+..+..+.. .|.+ ..|||-+..+++|+. .|.|+||.-.
T Consensus 455 v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 455 VCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 888776654 4554 579999986666654 8899998754
No 99
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=7.6e-25 Score=211.80 Aligned_cols=309 Identities=14% Similarity=0.164 Sum_probs=234.7
Q ss_pred ccccccCCCCcc-ceeecccccceEEEEEEcCC-----------CCEEEEEeCCCeEEEEeccCCceeeEeec-------
Q 008844 3 APIIDPLQGDFP-EVIEEYLEHGVMKCIAFNRR-----------GTLLAAGCSDGSCVIWDFETRGIAKELRD------- 63 (551)
Q Consensus 3 l~lwd~~~~~~~-~~l~~~~h~~~V~~l~fs~d-----------g~~latg~~dg~I~iwd~~~~~~~~~~~~------- 63 (551)
|.|||...-..+ +.-..+.|...|+.+.--|. ...++|++.|++|++|++..+..-..++.
T Consensus 348 lYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l 427 (1080)
T KOG1408|consen 348 LYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL 427 (1080)
T ss_pred EEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhh
Confidence 678998744333 33344457777877765441 12588999999999999975221111100
Q ss_pred ----------------------------ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEE
Q 008844 64 ----------------------------KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQA 114 (551)
Q Consensus 64 ----------------------------~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~ 114 (551)
.+....|.+|+.+|+|++|++|..-|+|+||++..-+....+..|. .+.++
T Consensus 428 ~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcL 507 (1080)
T KOG1408|consen 428 SKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCL 507 (1080)
T ss_pred hcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEE
Confidence 0123579999999999999999999999999999988888888776 47788
Q ss_pred EEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC--CEEEEEe
Q 008844 115 RLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG--DLVYVGN 192 (551)
Q Consensus 115 ~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~g~ 192 (551)
.++.-.-...++++++.+.-|.+||+...-..... ...|...|+++.|-..| ..+++++
T Consensus 508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qt-------------------ld~HSssITsvKFa~~gln~~MiscG 568 (1080)
T KOG1408|consen 508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQT-------------------LDGHSSSITSVKFACNGLNRKMISCG 568 (1080)
T ss_pred eecCchhhhHhhhhccCCceEEEEecccccchhhh-------------------hcccccceeEEEEeecCCceEEEecc
Confidence 88755444568889999999999999876543222 23345589999998888 6788888
Q ss_pred cCceEEEEECCCCcEEEeee----ccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCc
Q 008844 193 SKGEILVIDHKSNQIRALVP----VSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNG 268 (551)
Q Consensus 193 ~dg~i~i~d~~~~~~~~~~~----~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (551)
.|..|++--.+...-...+. ......++.++..|..+++++++.|+.|+||+
T Consensus 569 ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~------------------------ 624 (1080)
T KOG1408|consen 569 ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD------------------------ 624 (1080)
T ss_pred CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe------------------------
Confidence 88877654443211112221 12356789999999999999999999999999
Q ss_pred ceeeeeccceeeeeecccc---cccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEE
Q 008844 269 IEKMKMVGSKCLALFREFQ---DSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAW 344 (551)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~ 344 (551)
+..++..+.|++.. +... .+...|.|.|||+... |.+|.|+|.. |+++..+.||.+.|+.+.|
T Consensus 625 -----i~sgKq~k~FKgs~~~eG~lI-----Kv~lDPSgiY~atScs---dktl~~~Df~sgEcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 625 -----IESGKQVKSFKGSRDHEGDLI-----KVILDPSGIYLATSCS---DKTLCFVDFVSGECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred -----ccccceeeeecccccCCCceE-----EEEECCCccEEEEeec---CCceEEEEeccchhhhhhcCcchheeeeee
Confidence 22355566666533 3332 6789999999999999 9999999999 9999999999999999999
Q ss_pred ecCCCeEEEEcCCCcEEEEecCC
Q 008844 345 HPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 345 sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.+|-+.|++++.||.|.||.+..
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccchhheeecCCceEEEEECch
Confidence 99999999999999999999975
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=214.48 Aligned_cols=287 Identities=16% Similarity=0.265 Sum_probs=225.2
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEeccCCc------eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC-
Q 008844 28 CIAFN-RRGTLLAAGCSDGSCVIWDFETRG------IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG- 99 (551)
Q Consensus 28 ~l~fs-~dg~~latg~~dg~I~iwd~~~~~------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~- 99 (551)
++..+ |.++||+||+.||.|++|++.... .+..+.. |...|+.+....+++.|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh--hHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 33343 467899999999999999986432 2444543 5999999999999999999999999999999877
Q ss_pred -eEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCC-CCCCCc
Q 008844 100 -EKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDG-TPPFTP 176 (551)
Q Consensus 100 -~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 176 (551)
-++.++..|.. +.++++. ..+..++++++.|+.|++||+.++......... ........ ++...|
T Consensus 107 ~~c~stir~H~DYVkcla~~--ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n----------~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI--AKNNELVASGGLDRKIFLWDINTGTATLVASFN----------NVTVNSLGSGPKDSI 174 (735)
T ss_pred chhHhhhhcccchheeeeec--ccCceeEEecCCCccEEEEEccCcchhhhhhcc----------ccccccCCCCCccce
Confidence 46666776665 4455542 244568999999999999999988541111000 00011111 455589
Q ss_pred eEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhh
Q 008844 177 TAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEAL 256 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (551)
.+++.++.|..|++|+..+.|++||.++++.+..+. +|...|..+..+++|+.+++++.||+|++||
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd------------ 241 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWD------------ 241 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeee------------
Confidence 999999999999999999999999999999988887 9999999999999999999999999999999
Q ss_pred hhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEEEec
Q 008844 257 VDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKILEG 334 (551)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~ 334 (551)
....+|+.++..|...+. ++..+|+-.++++|+. +|.|+.=|+. .+....++
T Consensus 242 -----------------LgqQrCl~T~~vH~e~VW-----aL~~~~sf~~vYsG~r---d~~i~~Tdl~n~~~~tlick- 295 (735)
T KOG0308|consen 242 -----------------LGQQRCLATYIVHKEGVW-----ALQSSPSFTHVYSGGR---DGNIYRTDLRNPAKSTLICK- 295 (735)
T ss_pred -----------------ccccceeeeEEeccCceE-----EEeeCCCcceEEecCC---CCcEEecccCCchhheEeec-
Confidence 233788999999998887 7788899999999999 9999999998 34444443
Q ss_pred CCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 335 PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 335 h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
...+|..+..+...+-+-+++.|+.|+-|....
T Consensus 296 ~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 296 EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred CCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 566788888876555556677789999997754
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=2e-24 Score=217.06 Aligned_cols=259 Identities=17% Similarity=0.282 Sum_probs=212.3
Q ss_pred ccccccCCCCccce-eecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 3 APIIDPLQGDFPEV-IEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 3 l~lwd~~~~~~~~~-l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
|.+|+..++..... +.. |.+.|.+++|...+.+|++|+.|.+++|||+.+|.+...+.+| ...|.++... ..+
T Consensus 230 l~~~~~~~~~~i~~~l~G--H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh--~stv~~~~~~--~~~ 303 (537)
T KOG0274|consen 230 LHLWDLNNGYLILTRLVG--HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH--TSSVRCLTID--PFL 303 (537)
T ss_pred eEEeecccceEEEeeccC--CCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC--CceEEEEEcc--Cce
Confidence 56899998877665 555 9999999999887899999999999999999999999999876 8999999885 457
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
+++|+.|.+|++|++.++.++..+.+|. ++.++.+. ..++++++.++.|.+|++.+++....
T Consensus 304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~s------------ 366 (537)
T KOG0274|consen 304 LVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKS------------ 366 (537)
T ss_pred EeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeee------------
Confidence 8888999999999999999999999554 56666666 23899999999999999998776533
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC-cEEEeeeccCccceEEEEEeeCCCEEEEeeCCCe
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN-QIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRT 239 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~ 239 (551)
..+|...|.++.+.+. .++++|+.|++|++||+.+. +++.++. .|...+..+.+ .+++|++++.|++
T Consensus 367 --------l~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 367 --------LSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred --------ecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEecccccc
Confidence 2335558999988765 79999999999999999999 8888886 77777766555 5779999999999
Q ss_pred EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 240 IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
|++|| .....++..+.+ +...+. .+++. ...+++++. ++.
T Consensus 435 Ik~WD-----------------------------~~~~~~~~~~~~~~~~~v~-----~l~~~--~~~il~s~~---~~~ 475 (537)
T KOG0274|consen 435 IKLWD-----------------------------AEEGECLRTLEGRHVGGVS-----ALALG--KEEILCSSD---DGS 475 (537)
T ss_pred EEEee-----------------------------cccCceeeeeccCCcccEE-----EeecC--cceEEEEec---CCe
Confidence 99999 333667777777 445555 44443 467777777 899
Q ss_pred EEEEecC-CceeEEEecC
Q 008844 319 IYIWDRA-GYLVKILEGP 335 (551)
Q Consensus 319 I~iwd~~-~~~~~~l~~h 335 (551)
+++||+. +.+.+.+-.+
T Consensus 476 ~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 476 VKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eEEEecccCchhhhhhhc
Confidence 9999999 8888776433
No 102
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=2.7e-24 Score=193.85 Aligned_cols=246 Identities=18% Similarity=0.265 Sum_probs=194.6
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCee-EEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPL-QARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
.|...|.++... +++|++|++||.+++||. .|+.+..+.+|..+. .+.+.........+++++.|.++++|.+..+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 457788888777 689999999999999995 688899998887644 4666654444558999999999999999887
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCC-------------------
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKS------------------- 204 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~------------------- 204 (551)
........ ...+|...|-++...++|..+++|+.|..|.||+..+
T Consensus 180 ~~~~~~~~----------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 180 ENKVKALK----------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred hhhhhHHh----------------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 65432211 1126777999999999999999999999999999321
Q ss_pred ------CcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccce
Q 008844 205 ------NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSK 278 (551)
Q Consensus 205 ------~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (551)
+.++.++. +|..+|.++.|++ ...+++++.|-+|+.||+.. +.
T Consensus 244 ~~~~~~r~P~vtl~-GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-----------------------------g~ 292 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLE-GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET-----------------------------GG 292 (423)
T ss_pred hhcccccCceEEec-ccccceeeEEEcC-CCceEeecccceEEEEEeec-----------------------------cc
Confidence 12344444 8999999999998 66899999999999999322 22
Q ss_pred eeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---Cc-eeEEEecCCCceEEEEEecCCC-eEEE
Q 008844 279 CLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GY-LVKILEGPKEALIDLAWHPVHP-IIVS 353 (551)
Q Consensus 279 ~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~-~~~~l~~h~~~v~~l~~sp~~~-~l~s 353 (551)
+...+. ....++++.++|..++|++|+. |..|++||.+ +. ....|.+|+..|.++.|+|... +|++
T Consensus 293 ~~~~~~------~~ksl~~i~~~~~~~Ll~~gss---dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 293 LKSTLT------TNKSLNCISYSPLSKLLASGSS---DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ceeeee------cCcceeEeecccccceeeecCC---CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 222222 2233448999999999999999 9999999998 33 4567889999999999999887 7889
Q ss_pred EcCCCcEEEEecCCCC
Q 008844 354 VSLTGWVYIWAKDYTE 369 (551)
Q Consensus 354 ~s~dg~i~iW~~~~~~ 369 (551)
++.|+++++||+.+..
T Consensus 364 ~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTK 379 (423)
T ss_pred EecCCeEEEEEeccCC
Confidence 9999999999998754
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.2e-24 Score=195.73 Aligned_cols=261 Identities=13% Similarity=0.189 Sum_probs=217.9
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
++.++|...++...++.. |...|+.+.|+|+...+++++.|-.|+||.............| ..+|+.+..+|.|.|
T Consensus 242 ~av~~d~~s~q~l~~~~G--h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h--~~~V~~ls~h~tgeY 317 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLKG--HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPH--EEPVTGLSLHPTGEY 317 (506)
T ss_pred ceEEEecchhhhhhhccC--cceEEEEEEeccchhheeecCCcceEEeeccccccCccccccc--cccceeeeeccCCcE
Confidence 345666666666666665 8899999999999999999999999999999887777777665 999999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcCC---CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQQ---TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
|++++.|++..+.|+++|..+....... ...++.|||++- ++.++..++.+.+||+..+....
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL---ifgtgt~d~~vkiwdlks~~~~a----------- 383 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL---IFGTGTPDGVVKIWDLKSQTNVA----------- 383 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce---EEeccCCCceEEEEEcCCccccc-----------
Confidence 9999999999999999999988877642 377899999964 78899999999999999876321
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR 238 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg 238 (551)
....|..+|..++|+.+|.++++++.|+.|++||++..+...++.......+.++.|.+.|.+|+.++.|=
T Consensus 384 ---------~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 384 ---------KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred ---------cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeeccee
Confidence 22346669999999999999999999999999999999988888767777899999999999999998887
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
.|++++- ......++..+..|.+..+ .+.|....+++++++. +..
T Consensus 455 ~Vy~~~k---------------------------~~k~W~~~~~~~~~sg~st-----~v~Fg~~aq~l~s~sm---d~~ 499 (506)
T KOG0289|consen 455 QVYICKK---------------------------KTKSWTEIKELADHSGLST-----GVRFGEHAQYLASTSM---DAI 499 (506)
T ss_pred EEEEEec---------------------------ccccceeeehhhhcccccc-----eeeecccceEEeeccc---hhh
Confidence 7777761 1122455666667776666 7889999999999999 788
Q ss_pred EEEEec
Q 008844 319 IYIWDR 324 (551)
Q Consensus 319 I~iwd~ 324 (551)
++++.+
T Consensus 500 l~~~a~ 505 (506)
T KOG0289|consen 500 LRLYAL 505 (506)
T ss_pred eEEeec
Confidence 887754
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.9e-25 Score=187.33 Aligned_cols=253 Identities=15% Similarity=0.274 Sum_probs=195.2
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---eeeEeecccccccEEEEEecC--CCCEEEEEeCCCCEEEEE
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG---IAKELRDKECVAAITSVCWSK--YGHRILVSAADKSLTLWD 95 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~---~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~vwd 95 (551)
.|...|..+...-.|+.|||++.|++|+|+.+.... ++.+|.+| .+||..++|.. -|.+|++++.||.|.||.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh--~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGH--SGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCC--CCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 377888888888899999999999999999998644 56667665 99999999976 699999999999999999
Q ss_pred cCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
-.+|+-.+... ...|...
T Consensus 87 e~~g~w~k~~e--------------------------------------------------------------~~~h~~S 104 (299)
T KOG1332|consen 87 EENGRWTKAYE--------------------------------------------------------------HAAHSAS 104 (299)
T ss_pred cCCCchhhhhh--------------------------------------------------------------hhhhccc
Confidence 77764222111 1122337
Q ss_pred ceEEEEeeCC--CEEEEEecCceEEEEECCCC--cEEEeeeccCccceEEEEEeeC---C-----------CEEEEeeCC
Q 008844 176 PTAACFNKYG--DLVYVGNSKGEILVIDHKSN--QIRALVPVSGAAVIKNIVFSRN---G-----------QYLLTNSND 237 (551)
Q Consensus 176 i~~~~~s~~g--~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~l~~s~~---g-----------~~l~t~s~D 237 (551)
+++++|.|.+ -.|+++++||.|.|.+.++. -....+...|.-.|++++|.|. | +.|++|+.|
T Consensus 105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD 184 (299)
T KOG1332|consen 105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD 184 (299)
T ss_pred ceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc
Confidence 7888887764 67899999999999988765 2233444488999999999986 4 569999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC----CCEEEEeecc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD----GEWVIAGSAS 313 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d----g~~l~~gs~~ 313 (551)
..|+||+... ..-..-..+.+|.+.|. .++|.|. -.+||+++.
T Consensus 185 n~VkiW~~~~---------------------------~~w~~e~~l~~H~dwVR-----DVAwaP~~gl~~s~iAS~Sq- 231 (299)
T KOG1332|consen 185 NLVKIWKFDS---------------------------DSWKLERTLEGHKDWVR-----DVAWAPSVGLPKSTIASCSQ- 231 (299)
T ss_pred cceeeeecCC---------------------------cchhhhhhhhhcchhhh-----hhhhccccCCCceeeEEecC-
Confidence 9999998211 01122344889999998 6677774 368999999
Q ss_pred CCcceEEEEecC--Cc--eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 314 KGEHKIYIWDRA--GY--LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 314 ~~dg~I~iwd~~--~~--~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
||.|.||... ++ ....|+.....+..+.|++.|++|+.++.|+.|.+|.-+....|.
T Consensus 232 --Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 232 --DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWE 292 (299)
T ss_pred --CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEE
Confidence 9999999887 22 223344456789999999999999999999999999976554443
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.3e-24 Score=188.77 Aligned_cols=284 Identities=15% Similarity=0.251 Sum_probs=223.3
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEc-----
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDV----- 96 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~----- 96 (551)
|...|..++......++.+++.|.+.+||.++++.++.++.+| .+.|++|.|++.+.++++++.|++..||..
T Consensus 147 HkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH--~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 147 HKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH--TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred cccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc--ccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 7788999988777789999999999999999999999999877 999999999999999999999999999961
Q ss_pred -CC------------------------------C----eEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEc
Q 008844 97 -LK------------------------------G----EKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDL 140 (551)
Q Consensus 97 -~~------------------------------~----~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~ 140 (551)
.. | .++..+.+|.. +.++.|...+. .+++++.|.+..+||+
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~---Q~vTaSWDRTAnlwDV 301 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ---QMVTASWDRTANLWDV 301 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc---eeeeeeccccceeeee
Confidence 11 0 12334445544 33445665544 6899999999999999
Q ss_pred CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE-EEeeeccCccce
Q 008844 141 STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVI 219 (551)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i 219 (551)
.++..... ..+|....+.++-+|..+++++.+.|-+.++||++..-. +..++ +|...|
T Consensus 302 Etge~v~~--------------------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtV 360 (481)
T KOG0300|consen 302 ETGEVVNI--------------------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTV 360 (481)
T ss_pred ccCceecc--------------------ccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccce
Confidence 99987543 234455788888999999999999999999999985433 55555 899999
Q ss_pred EEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeE
Q 008844 220 KNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 299 (551)
+++.|..+. .+++|+.|.+|+|||+.. . ...+.+++ ...+++ .++
T Consensus 361 TS~vF~~dd-~vVSgSDDrTvKvWdLrN-M---------------------------RsplATIR-tdS~~N-----Rva 405 (481)
T KOG0300|consen 361 TSVVFNTDD-RVVSGSDDRTVKVWDLRN-M---------------------------RSPLATIR-TDSPAN-----RVA 405 (481)
T ss_pred eEEEEecCC-ceeecCCCceEEEeeecc-c---------------------------cCcceeee-cCCccc-----eeE
Confidence 999998765 589999999999999221 0 11223332 223344 778
Q ss_pred EcCCCCEEEEeeccCCcceEEEEecCCceeEEE-----ecCCCceEEEEEecCCC--eEEEEcCCCcEEEEecCCCC
Q 008844 300 FSGDGEWVIAGSASKGEHKIYIWDRAGYLVKIL-----EGPKEALIDLAWHPVHP--IIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 300 ~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l-----~~h~~~v~~l~~sp~~~--~l~s~s~dg~i~iW~~~~~~ 369 (551)
.+..+..|+.--. +..|++||++|..+..+ ++|..-|++++|..+.+ -|++||.|..+.=|++..+.
T Consensus 406 vs~g~~iIAiPhD---NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 406 VSKGHPIIAIPHD---NRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eecCCceEEeccC---CceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 8888888888777 78999999996655544 47888999999987665 68999999999999998653
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.6e-24 Score=187.55 Aligned_cols=297 Identities=15% Similarity=0.221 Sum_probs=211.2
Q ss_pred EEEEeccCCceeeEee---cccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe-----EEEEEEcCCCeeEEEEec
Q 008844 47 CVIWDFETRGIAKELR---DKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-----KITRIVLQQTPLQARLHP 118 (551)
Q Consensus 47 I~iwd~~~~~~~~~~~---~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~p 118 (551)
+.-|+.......+.+. ..+|...|++++|+.||++|++++.|++|+||++++.. +++.-.....++.+.|.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap 142 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP 142 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence 4556655444333221 12459999999999999999999999999999997643 222222223578889999
Q ss_pred CCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEE
Q 008844 119 GSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEIL 198 (551)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~ 198 (551)
+-. .+++++.....+++|-+....--..+...... ........|...+..+-....+.+|++++.|..|.
T Consensus 143 Dc~--s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~--------D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 143 DCK--SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHI--------DNLEFERKHQVDIINIGIAGNAKYIMSASLDTKIC 212 (420)
T ss_pred Ccc--eEEEEEccCCEEEEEEeeecccCCCCcccccc--------cccccchhcccceEEEeecCCceEEEEecCCCcEE
Confidence 754 47777788888999987654332111111100 11111222333566666777789999999999999
Q ss_pred EEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccce
Q 008844 199 VIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSK 278 (551)
Q Consensus 199 i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (551)
+|+++ |+.+..+. .....-+..+.+|+|++|++++.---|++|.+.....+..+. ..
T Consensus 213 lw~lk-Gq~L~~id-tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqe---------------------v~ 269 (420)
T KOG2096|consen 213 LWDLK-GQLLQSID-TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQE---------------------VK 269 (420)
T ss_pred EEecC-Cceeeeec-cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhh---------------------hh
Confidence 99999 88877774 444556778999999999999999999999965554444333 22
Q ss_pred eeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-----CceeEEEe-------cCCCceEEEEEec
Q 008844 279 CLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-----GYLVKILE-------GPKEALIDLAWHP 346 (551)
Q Consensus 279 ~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-----~~~~~~l~-------~h~~~v~~l~~sp 346 (551)
.+..+.+|+..|. .++||++.+.+++.+. ||.++|||++ ++-...|+ ...+....|+++|
T Consensus 270 rvf~LkGH~saV~-----~~aFsn~S~r~vtvSk---DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP 341 (420)
T KOG2096|consen 270 RVFSLKGHQSAVL-----AAAFSNSSTRAVTVSK---DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP 341 (420)
T ss_pred hhheeccchhhee-----eeeeCCCcceeEEEec---CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence 3556889999998 8999999999999999 9999999987 22222221 1223455899999
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcc-------------eeecCCcceeceec
Q 008844 347 VHPIIVSVSLTGWVYIWAKDYTENW-------------SAFAPDFKELEENE 385 (551)
Q Consensus 347 ~~~~l~s~s~dg~i~iW~~~~~~~~-------------~~~spd~~~l~~~~ 385 (551)
.+..||.+. ...|.++..+.++.. .+|+++|+.++...
T Consensus 342 ~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 342 SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 999888765 457999998887633 27999999988765
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.1e-24 Score=186.67 Aligned_cols=249 Identities=14% Similarity=0.216 Sum_probs=195.1
Q ss_pred CccccccCC-CCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 2 NAPIIDPLQ-GDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~-~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
.|++|+... |.+.. -....|.++|.+++|+.+|..+++|+.|+.+++||+.+++. ..+.. |..+|.++.|-+...
T Consensus 51 tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~--Hd~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 51 TVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAA--HDAPVKTCHWVPGMN 126 (347)
T ss_pred ceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeee--cccceeEEEEecCCC
Confidence 378898875 33322 22334889999999999999999999999999999999965 44444 499999999988665
Q ss_pred --EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCC
Q 008844 81 --RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 81 --~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
.|+|||.|++|+.||++...++.++.++..++.+..-. .+++++..+..|.+|+++.+....-.
T Consensus 127 ~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~-----pm~vVata~r~i~vynL~n~~te~k~--------- 192 (347)
T KOG0647|consen 127 YQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY-----PMAVVATAERHIAVYNLENPPTEFKR--------- 192 (347)
T ss_pred cceeEecccccceeecccCCCCeeeeeeccceeeehhccC-----ceeEEEecCCcEEEEEcCCCcchhhh---------
Confidence 89999999999999999999999999999888776543 27888899999999999877543221
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE--EEeeeccC---------ccceEEEEEeeC
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI--RALVPVSG---------AAVIKNIVFSRN 227 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~---------~~~i~~l~~s~~ 227 (551)
......+.+.|++..++....+.|+-.|.+.|..+..+.. -..++ .| -..|++|+|+|.
T Consensus 193 ---------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk-CHR~~~~~~~~VYaVNsi~FhP~ 262 (347)
T KOG0647|consen 193 ---------IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK-CHRSTNSVNDDVYAVNSIAFHPV 262 (347)
T ss_pred ---------hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE-EeccCCCCCCceEEecceEeecc
Confidence 1122334889999999998889999999999998887522 22222 22 135788999999
Q ss_pred CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEE
Q 008844 228 GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWV 307 (551)
Q Consensus 228 g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l 307 (551)
-..|+|.+.||+..+||- .....+.....|..+|+ +++|+.+|.++
T Consensus 263 hgtlvTaGsDGtf~FWDk-----------------------------dar~kLk~s~~~~qpIt-----cc~fn~~G~if 308 (347)
T KOG0647|consen 263 HGTLVTAGSDGTFSFWDK-----------------------------DARTKLKTSETHPQPIT-----CCSFNRNGSIF 308 (347)
T ss_pred cceEEEecCCceEEEecc-----------------------------hhhhhhhccCcCCCccc-----eeEecCCCCEE
Confidence 889999999999999991 11223455566777777 99999999999
Q ss_pred EEeec
Q 008844 308 IAGSA 312 (551)
Q Consensus 308 ~~gs~ 312 (551)
|.+..
T Consensus 309 aYA~g 313 (347)
T KOG0647|consen 309 AYALG 313 (347)
T ss_pred EEEee
Confidence 87765
No 108
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=5e-25 Score=194.39 Aligned_cols=246 Identities=14% Similarity=0.223 Sum_probs=203.2
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEE---------cCCCeeEEEEecCCCCCcEEEEeeCCCCcEE
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIV---------LQQTPLQARLHPGSSTPSLCLACPLSSAPMI 137 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~---------~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i 137 (551)
..-+-|..|+|||+||++|+.||.|-|||..+|+....+. ...++.++.|+.++. .+++++.||.|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE---MlAsGsqDGkIKv 289 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE---MLASGSQDGKIKV 289 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH---HhhccCcCCcEEE
Confidence 5678899999999999999999999999999997655443 234577888887754 7899999999999
Q ss_pred EEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCcc
Q 008844 138 VDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAA 217 (551)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 217 (551)
|.+.+|.+.... ...|...|+|+.|+.++..+++++.|.+++|.-+.+|+++..+. +|..
T Consensus 290 Wri~tG~ClRrF-------------------drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsS 349 (508)
T KOG0275|consen 290 WRIETGQCLRRF-------------------DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSS 349 (508)
T ss_pred EEEecchHHHHh-------------------hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-Cccc
Confidence 999999875322 23344589999999999999999999999999999999999987 9999
Q ss_pred ceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeee
Q 008844 218 VIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKA 297 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 297 (551)
.|+...|.++|.++++++.||+|++|+ ..+..|+.+++... +..++++
T Consensus 350 yvn~a~ft~dG~~iisaSsDgtvkvW~-----------------------------~KtteC~~Tfk~~~---~d~~vns 397 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSDGTVKVWH-----------------------------GKTTECLSTFKPLG---TDYPVNS 397 (508)
T ss_pred cccceEEcCCCCeEEEecCCccEEEec-----------------------------CcchhhhhhccCCC---Cccccee
Confidence 999999999999999999999999999 23356666666543 2333346
Q ss_pred eEEcC-CCCEEEEeeccCCcceEEEEecCCceeEEEecC---CCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 298 PCFSG-DGEWVIAGSASKGEHKIYIWDRAGYLVKILEGP---KEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 298 ~~~s~-dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h---~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
+..-| +-..++++.. .++|+|.++.|+.++.+... .+...+.+.+|.|.++++.+.|+.++.|.+.++..
T Consensus 398 v~~~PKnpeh~iVCNr---sntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 398 VILLPKNPEHFIVCNR---SNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred EEEcCCCCceEEEEcC---CCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 66655 4456666666 68999999999999998653 35677888999999999999999999999988753
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4e-23 Score=173.57 Aligned_cols=255 Identities=18% Similarity=0.202 Sum_probs=195.7
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC--cee-eEeecccccccEEEEEecCC----CCEEEEEeC-CCCEE
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR--GIA-KELRDKECVAAITSVCWSKY----GHRILVSAA-DKSLT 92 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~--~~~-~~~~~~~h~~~V~~l~~s~~----g~~l~s~s~-dg~i~ 92 (551)
.|.+.|.|.+|||+|.+||+|+.|.+|++.-+... +.. ..+....|.+.|..++|..+ +.+|++++. |..|.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 36699999999999999999999999999766432 211 22333346899999999653 567777765 77888
Q ss_pred EEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 93 LWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
+-|...|+....+.+|..-.-..++.+ ..++++++.+.+|++||++-.......-... ...+-.
T Consensus 167 ~tdc~~g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~-------------~~~gle 230 (350)
T KOG0641|consen 167 ITDCGRGQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDF-------------HDGGLE 230 (350)
T ss_pred EeecCCCCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcc-------------cCCCcc
Confidence 889999999999988877555444443 3489999999999999999877654321110 111112
Q ss_pred CCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcccc
Q 008844 173 PFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
...|.+++..|.|++|++|..|....+||++.++.++.+. +|...|.++.|+|...||++++.|..|++-|+....
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl--- 306 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL--- 306 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccch---
Confidence 2378999999999999999999999999999999999887 899999999999999999999999999999932110
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
...-.+.....|.+.+. .+.|.|..--+++.+. |.++.+|-+.
T Consensus 307 ----------------------a~el~~~vv~ehkdk~i-----~~rwh~~d~sfisssa---dkt~tlwa~~ 349 (350)
T KOG0641|consen 307 ----------------------AHELPIMVVAEHKDKAI-----QCRWHPQDFSFISSSA---DKTATLWALN 349 (350)
T ss_pred ----------------------hhcCceEEEEeccCceE-----EEEecCccceeeeccC---cceEEEeccC
Confidence 00112334556666665 7788998888888888 8999999764
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=206.10 Aligned_cols=314 Identities=20% Similarity=0.333 Sum_probs=228.9
Q ss_pred ccceeeccccc-ceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCC
Q 008844 13 FPEVIEEYLEH-GVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKS 90 (551)
Q Consensus 13 ~~~~l~~~~h~-~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~ 90 (551)
+-++|..+.|. +.|++++|..||+ +||+|+..|.+.+||++..+.+..+.. .|.+.|..+.|.|....|++++.|+.
T Consensus 233 ~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 233 FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCc
Confidence 34577777786 9999999999997 667788889999999998887777763 46899999999999999999999999
Q ss_pred EEEEEcCCCe----EEEEEEcCC-CeeEEEEecC----------------------------------------------
Q 008844 91 LTLWDVLKGE----KITRIVLQQ-TPLQARLHPG---------------------------------------------- 119 (551)
Q Consensus 91 i~vwd~~~~~----~~~~~~~~~-~~~~~~~~p~---------------------------------------------- 119 (551)
+++|=..++. .++...+|. ++.++.|.-.
T Consensus 312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE 391 (910)
T ss_pred eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence 9998554332 222222222 2333333210
Q ss_pred -----------------CCCCcEEEEeeCCCCcEEEEcCCCceeeeccccC--------------CCC------------
Q 008844 120 -----------------SSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVP--------------DVA------------ 156 (551)
Q Consensus 120 -----------------~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--------------~~~------------ 156 (551)
....+.+.+.-.+...+.|+++....-...+... ...
T Consensus 392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 0011223333334445555554433211000000 000
Q ss_pred ----CCCCCCCCCCC-CCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEE
Q 008844 157 ----NGIAPSSRNKY-SDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYL 231 (551)
Q Consensus 157 ----~~~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 231 (551)
+.-....+..+ ....|..+|+.++...-++.+++++.+|.+.+||......+..+ .-...+.++..+.....+
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l--~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL--RLGSSITGIVYHRVSDLL 549 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee--ccCCCcceeeeeehhhhh
Confidence 00000011111 23467779999999999999999999999999999999888887 445678889999888899
Q ss_pred EEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEee
Q 008844 232 LTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGS 311 (551)
Q Consensus 232 ~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs 311 (551)
+++..|-.|+++|+ .+.+.++.+.+|.+.++ .++|||||+||++++
T Consensus 550 a~~~ddf~I~vvD~-----------------------------~t~kvvR~f~gh~nrit-----d~~FS~DgrWlisas 595 (910)
T KOG1539|consen 550 AIALDDFSIRVVDV-----------------------------VTRKVVREFWGHGNRIT-----DMTFSPDGRWLISAS 595 (910)
T ss_pred hhhcCceeEEEEEc-----------------------------hhhhhhHHhhcccccee-----eeEeCCCCcEEEEee
Confidence 99999999999992 23455778899999998 999999999999999
Q ss_pred ccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCC-CcEEEEecCC
Q 008844 312 ASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLT-GWVYIWAKDY 367 (551)
Q Consensus 312 ~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~d-g~i~iW~~~~ 367 (551)
. |++|++||+. +.++-.+. -..+++++.|+|+|.+|||+..| .-|++|.-..
T Consensus 596 m---D~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 596 M---DSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred c---CCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 9 9999999999 98888876 46789999999999999999998 5699998654
No 111
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=2.2e-23 Score=179.62 Aligned_cols=269 Identities=14% Similarity=0.154 Sum_probs=208.7
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
..||-...|+..-+... |.+.|.|+..+.+.++|++|+.|.++++||+.+|+.+..+.. ..+|..+.|+++|+++
T Consensus 34 ~~vw~s~nGerlGty~G--HtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~---~~~Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 34 PTVWYSLNGERLGTYDG--HTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT---NSPVKRVDFSFGGNLI 108 (327)
T ss_pred ceEEEecCCceeeeecC--CCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec---CCeeEEEeeccCCcEE
Confidence 35777778876666655 889999999999999999999999999999999999999976 5899999999999988
Q ss_pred EEEeC-----CCCEEEEEcC-------CCeEEEEEEcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeec
Q 008844 83 LVSAA-----DKSLTLWDVL-------KGEKITRIVLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILP 149 (551)
Q Consensus 83 ~s~s~-----dg~i~vwd~~-------~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 149 (551)
+.+.. .+.|.++|++ ...++..+..+ ..+..+.|.|.+. .++++..+|.|.+||++++....-.
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~---~ii~Ghe~G~is~~da~~g~~~v~s 185 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE---TIIAGHEDGSISIYDARTGKELVDS 185 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC---EEEEecCCCcEEEEEcccCceeeec
Confidence 87654 5679999997 33445555444 4578888999865 7999999999999999998765432
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCC
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQ 229 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 229 (551)
...|...|+.++++++..++++|+.|.+-++||..+-+++.++ ....+|++.+++|...
T Consensus 186 -------------------~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty--~te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 186 -------------------DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY--TTERPVNTAAISPLLD 244 (327)
T ss_pred -------------------hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe--eecccccceecccccc
Confidence 2334448999999999999999999999999999999999998 6788999999999877
Q ss_pred EEEEeeCCCeEEEEeCcCCccc--cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEE
Q 008844 230 YLLTNSNDRTIRIYDNLLPLKN--GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWV 307 (551)
Q Consensus 230 ~l~t~s~Dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l 307 (551)
+++.|+...-.-|=- .....+ ..+.+..+ -.+.+..+++|-++|+ +++|+|+|+..
T Consensus 245 ~VilgGGqeA~dVTT-T~~r~GKFEArFyh~i----------------~eEEigrvkGHFGPIN-----svAfhPdGksY 302 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTT-TSTRAGKFEARFYHLI----------------FEEEIGRVKGHFGPIN-----SVAFHPDGKSY 302 (327)
T ss_pred eEEecCCceeeeeee-ecccccchhhhHHHHH----------------HHHHhccccccccCcc-----eeEECCCCccc
Confidence 776664322221111 000000 00111000 0223456778888888 99999999999
Q ss_pred EEeeccCCcceEEEEecC
Q 008844 308 IAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 308 ~~gs~~~~dg~I~iwd~~ 325 (551)
++|+. ||.|+|....
T Consensus 303 sSGGE---DG~VR~h~Fd 317 (327)
T KOG0643|consen 303 SSGGE---DGYVRLHHFD 317 (327)
T ss_pred ccCCC---CceEEEEEec
Confidence 99999 9999987654
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=9.2e-23 Score=190.30 Aligned_cols=292 Identities=16% Similarity=0.222 Sum_probs=217.3
Q ss_pred CccccccCCCCccceeeccccc--ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEH--GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~--~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g 79 (551)
++.+|++..+.+.+....+... ..|.|++|.++|. ++||..+|.|.||+..+.+..+... .|.+.|.+|+...+|
T Consensus 223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~G 299 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCMLRDG 299 (626)
T ss_pred eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEecCc
Confidence 3678988888777665554432 6799999999997 6689999999999998888777776 459999999999999
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEE-EecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCC
Q 008844 80 HRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQAR-LHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
. |++|+.|..|..|| ..-+.++.+..+...-.++ ..+... . ++.+...+.|..=.+.++.....
T Consensus 300 t-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~-d--i~vGTtrN~iL~Gt~~~~f~~~v---------- 364 (626)
T KOG2106|consen 300 T-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKG-D--ILVGTTRNFILQGTLENGFTLTV---------- 364 (626)
T ss_pred c-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCC-c--EEEeeccceEEEeeecCCceEEE----------
Confidence 7 55699999999999 4445555555544322122 122211 1 66666666666656655544332
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR 238 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg 238 (551)
..|......++.+|+...+++++.|+.+.+|+ ..++.... .-..++.++.|+|.| .||.|+..|
T Consensus 365 -----------~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--~~~d~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 365 -----------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--IIEDPAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred -----------EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE--EecCceeEeeccCcc-eEEEeeccc
Confidence 22333778899999999999999999999999 45554444 456788999999999 999999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
...+.|... ..+..++.-..++ +.+.|+|+|.+||.|+. |+.
T Consensus 429 ~w~V~d~e~------------------------------~~lv~~~~d~~~l-----s~v~ysp~G~~lAvgs~---d~~ 470 (626)
T KOG2106|consen 429 RWFVLDTET------------------------------QDLVTIHTDNEQL-----SVVRYSPDGAFLAVGSH---DNH 470 (626)
T ss_pred eEEEEeccc------------------------------ceeEEEEecCCce-----EEEEEcCCCCEEEEecC---CCe
Confidence 999998211 1122222223334 48999999999999999 999
Q ss_pred EEEEecC--CceeEEEe-cCCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 319 IYIWDRA--GYLVKILE-GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 319 I~iwd~~--~~~~~~l~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
|+||.+. |.....+. .|..+|+.+.|++|+++|.+-+.|-.|..|..
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 9999998 55444433 34489999999999999999999999999943
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.3e-24 Score=204.62 Aligned_cols=250 Identities=18% Similarity=0.317 Sum_probs=203.5
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC
Q 008844 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 29 l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 108 (551)
+.|+ ..+.||+|. ...|++|+..++........+ ...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+..+
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 5566 456788775 457999999999877666654 789999999999999999999999999999888777766652
Q ss_pred CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEE
Q 008844 109 QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLV 188 (551)
Q Consensus 109 ~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 188 (551)
+ ...|.+++|+ +..+
T Consensus 259 h---------------------------------------------------------------~~rvg~laW~--~~~l 273 (484)
T KOG0305|consen 259 H---------------------------------------------------------------ASRVGSLAWN--SSVL 273 (484)
T ss_pred c---------------------------------------------------------------CceeEEEecc--CceE
Confidence 1 1178888997 6689
Q ss_pred EEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCc
Q 008844 189 YVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNG 268 (551)
Q Consensus 189 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (551)
.+|+.+|.|.++|++..+........|...|..+.|++++++||+|+.|+.+.|||.
T Consensus 274 ssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~----------------------- 330 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG----------------------- 330 (484)
T ss_pred EEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC-----------------------
Confidence 999999999999999887755533389999999999999999999999999999992
Q ss_pred ceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEec
Q 008844 269 IEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHP 346 (551)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp 346 (551)
.....+..+..|...|. +++|+| ....||+|+... |++|++||.. |..+..+. ....|..|.|++
T Consensus 331 ------~~~~p~~~~~~H~aAVK-----A~awcP~q~~lLAsGGGs~-D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk 397 (484)
T KOG0305|consen 331 ------LSPEPKFTFTEHTAAVK-----ALAWCPWQSGLLATGGGSA-DRCIKFWNTNTGARIDSVD-TGSQVCSLIWSK 397 (484)
T ss_pred ------CCccccEEEeccceeee-----EeeeCCCccCceEEcCCCc-ccEEEEEEcCCCcEecccc-cCCceeeEEEcC
Confidence 12455777888999988 899999 567888887666 9999999999 88888776 357899999999
Q ss_pred CCCeEEEE-cC-CCcEEEEecCCCCcce------------eecCCcceece
Q 008844 347 VHPIIVSV-SL-TGWVYIWAKDYTENWS------------AFAPDFKELEE 383 (551)
Q Consensus 347 ~~~~l~s~-s~-dg~i~iW~~~~~~~~~------------~~spd~~~l~~ 383 (551)
..+-|+++ |. ++.|.||+..+..... +++|||..+..
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 98755554 33 7789999997754322 78888777654
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=9.5e-24 Score=202.24 Aligned_cols=305 Identities=16% Similarity=0.198 Sum_probs=215.3
Q ss_pred EEEEEcCC---CCEEEEEeCCCeEEEEeccCCcee------eEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC
Q 008844 27 KCIAFNRR---GTLLAAGCSDGSCVIWDFETRGIA------KELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 27 ~~l~fs~d---g~~latg~~dg~I~iwd~~~~~~~------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~ 97 (551)
.+..|++. ..+||.+..+|.|.++|....... .... .|...|..+.|.|....|++++.|.++++||+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~--aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPL--AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccc--cccceeEeeccCCCceeEEEccCCceeeeeeec
Confidence 44667653 458999999999999998754322 2233 459999999999977789999999999999999
Q ss_pred CCeEEEE--EEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeec-------cccCCCCCCCCCCCCCCC
Q 008844 98 KGEKITR--IVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILP-------IAVPDVANGIAPSSRNKY 167 (551)
Q Consensus 98 ~~~~~~~--~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 167 (551)
+++++.. +.+|. .+.+++|+|.. +.++++++.|+.+.|||++......+. ...........+......
T Consensus 131 ~s~l~G~~~~~GH~~SvkS~cf~~~n--~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 131 TSRLVGGRLNLGHTGSVKSECFMPTN--PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred cceeecceeecccccccchhhhccCC--CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 9888776 55554 46788999965 569999999999999999876521111 011110011111111122
Q ss_pred CCCCCCCCceE---EEEeeCCCEEEEEec-CceEEEEECCCCcEEEeeec-------cC---ccceEEEEEeeCCCEEEE
Q 008844 168 SDGTPPFTPTA---ACFNKYGDLVYVGNS-KGEILVIDHKSNQIRALVPV-------SG---AAVIKNIVFSRNGQYLLT 233 (551)
Q Consensus 168 ~~~~~~~~i~~---~~~s~~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~-------~~---~~~i~~l~~s~~g~~l~t 233 (551)
....+...|.+ +.+..|...||+++. |+.|+|||++.......... .| ...+.++.....|.+|++
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 22223334444 556677888888877 99999999997654222110 12 345777888888899999
Q ss_pred eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeecc
Q 008844 234 NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS 313 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~ 313 (551)
.+.|+.|++|++..- +...+..+.++ .....+..-+.+|++.+|++|+.
T Consensus 289 sCtD~sIy~ynm~s~---------------------------s~sP~~~~sg~---~~~sf~vks~lSpd~~~l~SgSs- 337 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSL---------------------------SISPVAEFSGK---LNSSFYVKSELSPDDCSLLSGSS- 337 (720)
T ss_pred EecCCcEEEEecccc---------------------------CcCchhhccCc---ccceeeeeeecCCCCceEeccCC-
Confidence 999999999993221 12222233322 22222335678999999999999
Q ss_pred CCcceEEEEecC--CceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCC
Q 008844 314 KGEHKIYIWDRA--GYLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 314 ~~dg~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~ 368 (551)
+...++|.+. ......+.||.-.|++++|.|..- -+++|+.|.+++||++..+
T Consensus 338 --d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 338 --DEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred --CcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999999 677888899999999999988643 5777799999999999654
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=2.6e-24 Score=201.05 Aligned_cols=231 Identities=16% Similarity=0.262 Sum_probs=172.9
Q ss_pred ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE-EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 64 KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK-ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 64 ~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
.+|+..|.++++.|.|..|++|+.|.+|++||+..-.. ...++. +.|..
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~--------l~P~E---------------------- 213 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ--------LQPCE---------------------- 213 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc--------cCccc----------------------
Confidence 34689999999999999999999999999999864321 111111 11111
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee----------
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP---------- 212 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~---------- 212 (551)
...|.++.|++.|..|++.+....++|+|....+......
T Consensus 214 ------------------------------~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n 263 (641)
T KOG0772|consen 214 ------------------------------THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN 263 (641)
T ss_pred ------------------------------ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc
Confidence 1178899999999999988888899999977655444332
Q ss_pred -ccCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccc
Q 008844 213 -VSGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSI 290 (551)
Q Consensus 213 -~~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 290 (551)
.+|...+++.+|+|.. ..++|++.||++|||++..+. ..+..+..-...-
T Consensus 264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k----------------------------~q~qVik~k~~~g 315 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK----------------------------SQLQVIKTKPAGG 315 (641)
T ss_pred cCCceeeeeccccccCcccceEEecCCCcEEEEecCCch----------------------------hheeEEeeccCCC
Confidence 2688899999999975 468999999999999944331 1223333222223
Q ss_pred ceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC----CceeEEEecCCC--ceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 291 TKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA----GYLVKILEGPKE--ALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 291 ~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~----~~~~~~l~~h~~--~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.++..+.|+|++||++||+|+. ||.|.+|+.. ......-.+|.. .|++|.||++|++|++-|.|+++++||
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~---DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCL---DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred cccCceeeecCCCcchhhhccc---CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 3445559999999999999999 9999999976 223334456776 899999999999999999999999999
Q ss_pred cCCCCcc---------------eeecCCcceeceec
Q 008844 365 KDYTENW---------------SAFAPDFKELEENE 385 (551)
Q Consensus 365 ~~~~~~~---------------~~~spd~~~l~~~~ 385 (551)
+...+.. .+|+|+-+.+....
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecc
Confidence 9876522 28999988776543
No 116
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.6e-23 Score=199.25 Aligned_cols=279 Identities=19% Similarity=0.320 Sum_probs=212.7
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE-EEEEeCCCCEEEEEcCCC
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR-ILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~-l~s~s~dg~i~vwd~~~~ 99 (551)
.|.+.|.||...|.|.+||+|+.||+|+||.+.||.+++++.. .+.|.||+|+|.+.. ++.++...++.|-+..-|
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 4889999999999999999999999999999999999999976 478999999997542 222233333444332211
Q ss_pred e--------------------------------------EEEEEEcCCCeeEEEEecCCCCCcEEEEee---CCCCcEEE
Q 008844 100 E--------------------------------------KITRIVLQQTPLQARLHPGSSTPSLCLACP---LSSAPMIV 138 (551)
Q Consensus 100 ~--------------------------------------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~~~i~i~ 138 (551)
. ....+.....+..+.||-.|. ++++.. ....+.|+
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD---YlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD---YLATVMPDSGNKSVLIH 551 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc---eEEEeccCCCcceEEEE
Confidence 0 112334445566677777665 333333 33457777
Q ss_pred EcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccc
Q 008844 139 DLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAV 218 (551)
Q Consensus 139 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 218 (551)
++...... .++. .....+.++.|+|...+|++++.. .|+|||+....++..+. .....
T Consensus 552 QLSK~~sQ-~PF~-------------------kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~-tg~kw 609 (733)
T KOG0650|consen 552 QLSKRKSQ-SPFR-------------------KSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL-TGSKW 609 (733)
T ss_pred eccccccc-Cchh-------------------hcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh-cCCee
Confidence 77766543 1111 122278999999999999998854 79999999877766654 66778
Q ss_pred eEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 219 IKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 219 i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
|..++++|.|..|+.++.|+.+..||+... .+..+.++.|...++ .+
T Consensus 610 iS~msihp~GDnli~gs~d~k~~WfDldls----------------------------skPyk~lr~H~~avr-----~V 656 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLS----------------------------SKPYKTLRLHEKAVR-----SV 656 (733)
T ss_pred eeeeeecCCCCeEEEecCCCeeEEEEcccC----------------------------cchhHHhhhhhhhhh-----hh
Confidence 999999999999999999999999993322 455777888988888 88
Q ss_pred EEcCCCCEEEEeeccCCcceEEEEecC----------CceeEEEecCCCc----eEEEEEecCCCeEEEEcCCCcEEEE
Q 008844 299 CFSGDGEWVIAGSASKGEHKIYIWDRA----------GYLVKILEGPKEA----LIDLAWHPVHPIIVSVSLTGWVYIW 363 (551)
Q Consensus 299 ~~s~dg~~l~~gs~~~~dg~I~iwd~~----------~~~~~~l~~h~~~----v~~l~~sp~~~~l~s~s~dg~i~iW 363 (551)
+|++.-.++++|+. ||.+.||.-. --+++.|.+|... |.++.|||..++|++++.||+|++|
T Consensus 657 a~H~ryPLfas~sd---Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 657 AFHKRYPLFASGSD---DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhccccceeeeecC---CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999999999998 8999998643 1256778898765 9999999999999999999999998
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=3.6e-22 Score=192.97 Aligned_cols=277 Identities=14% Similarity=0.200 Sum_probs=198.7
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLL-AAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~l-atg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
.|.+||+.+++....+. +...+.+++|+|+|++| ++++.++.|++||+.+++.+..+..+ ..+..++|+|+++
T Consensus 12 ~v~~~d~~t~~~~~~~~---~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~ 85 (300)
T TIGR03866 12 TISVIDTATLEVTRTFP---VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG---PDPELFALHPNGK 85 (300)
T ss_pred EEEEEECCCCceEEEEE---CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC---CCccEEEECCCCC
Confidence 47899998887655554 33447789999999976 56678899999999998887776543 3356789999999
Q ss_pred EEEEE-eCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC-CcEEEEcCCCceeeeccccCCCCCC
Q 008844 81 RILVS-AADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS-APMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 81 ~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
.|+++ +.++.|.+||+.+++.+..+.....+..+.++|++. +++++..++ .+.+||..++........
T Consensus 86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~---~l~~~~~~~~~~~~~d~~~~~~~~~~~~------- 155 (300)
T TIGR03866 86 ILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGK---IVVNTSETTNMAHFIDTKTYEIVDNVLV------- 155 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCC---EEEEEecCCCeEEEEeCCCCeEEEEEEc-------
Confidence 77655 458999999999988888887666678899999864 555555554 466778877654321110
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCCCcEEEeeecc----C--ccceEEEEEeeCCCEE
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQIRALVPVS----G--AAVIKNIVFSRNGQYL 231 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~----~--~~~i~~l~~s~~g~~l 231 (551)
...+.+++|+++|++|++++ .+|.|.+||+.+++.+..+... + ......++|+|+++++
T Consensus 156 --------------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 156 --------------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred --------------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 01456789999999886554 5899999999999876655311 1 1123568899999986
Q ss_pred EEe-eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEe
Q 008844 232 LTN-SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAG 310 (551)
Q Consensus 232 ~t~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~g 310 (551)
+++ +.++.|.+||+.. .+....+. +...+. +++|+|+|++|+++
T Consensus 222 ~~~~~~~~~i~v~d~~~-----------------------------~~~~~~~~-~~~~~~-----~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 222 FVALGPANRVAVVDAKT-----------------------------YEVLDYLL-VGQRVW-----QLAFTPDEKYLLTT 266 (300)
T ss_pred EEEcCCCCeEEEEECCC-----------------------------CcEEEEEE-eCCCcc-----eEEECCCCCEEEEE
Confidence 554 4567899999211 12122211 222343 78999999999887
Q ss_pred eccCCcceEEEEecC-CceeEEEecCCCceEEEEEec
Q 008844 311 SASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHP 346 (551)
Q Consensus 311 s~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp 346 (551)
... ++.|.|||+. ++++..+... ...+.++++|
T Consensus 267 ~~~--~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 267 NGV--SNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred cCC--CCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 432 7899999999 9988888865 5558888875
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.4e-25 Score=214.64 Aligned_cols=253 Identities=11% Similarity=0.163 Sum_probs=192.0
Q ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEeccC---CceeeEeecccccccEEEEEecCC-CCEEEEEeCCCCEEEEEcCCCe
Q 008844 26 MKCIAFNR-RGTLLAAGCSDGSCVIWDFET---RGIAKELRDKECVAAITSVCWSKY-GHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 26 V~~l~fs~-dg~~latg~~dg~I~iwd~~~---~~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
+..+.|+. +.++|||++..|.|.+||+.. .+.+..|.. |...|+++.|++. ..+|++|++||+|++||++..+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E--H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE--HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhh--hccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 34466653 467999999999999999986 445556654 5999999999984 5789999999999999999877
Q ss_pred EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 101 KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
...++..... .|..+.
T Consensus 168 S~~t~~~nSE----------------------------------------------------------------SiRDV~ 183 (839)
T KOG0269|consen 168 SKSTFRSNSE----------------------------------------------------------------SIRDVK 183 (839)
T ss_pred ccccccccch----------------------------------------------------------------hhhcee
Confidence 6666654322 566666
Q ss_pred EeeC-CCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 181 FNKY-GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 181 ~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
|+|. +.+|+++...|.+.+||++...........|.++|.++.|+|++.+||||+.|+.|+||+...+.
T Consensus 184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~---------- 253 (839)
T KOG0269|consen 184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR---------- 253 (839)
T ss_pred eccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC----------
Confidence 6664 47899999999999999997665333233899999999999999999999999999999932221
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEEEecCCC
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPKE 337 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~ 337 (551)
...+.++. ...++. .+.|-|...+.++.+...+|..|+|||+. .-+...+..|..
T Consensus 254 -----------------~~~~~tIn-Tiapv~-----rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 254 -----------------AKPKHTIN-TIAPVG-----RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred -----------------ccceeEEe-ecceee-----eeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 11111111 112333 78888977765555444448999999999 667788889999
Q ss_pred ceEEEEEec-CCCeEEEEcCCCcEEEEecCCCCcceeecCC
Q 008844 338 ALIDLAWHP-VHPIIVSVSLTGWVYIWAKDYTENWSAFAPD 377 (551)
Q Consensus 338 ~v~~l~~sp-~~~~l~s~s~dg~i~iW~~~~~~~~~~~spd 377 (551)
.++.++|-. +...|.+++.||+|..-.+.....|..++++
T Consensus 311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pid~a~~ 351 (839)
T KOG0269|consen 311 SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPIDLANN 351 (839)
T ss_pred cccceeccCCCceeeEeecCccHHHHhhhhcccChhhhcCc
Confidence 999999955 4458999999999998888887777655443
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.8e-23 Score=193.19 Aligned_cols=243 Identities=16% Similarity=0.198 Sum_probs=186.8
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
.|...|.|++.|+||+|||+|+.|..|.||+..+.+.++.+.+| .+.|.+++|-.....|++++.|++|++|++....
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~gh--r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGH--RGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccc--ccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 47788999999999999999999999999999999999998876 9999999999888889999999999999999888
Q ss_pred EEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 101 KITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.+.++.+|+. +..+...... ..+.+++.|.++++|.+.......+. .+...+-|+
T Consensus 278 ~vetlyGHqd~v~~IdaL~re---R~vtVGgrDrT~rlwKi~eesqlifr---------------------g~~~sidcv 333 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRE---RCVTVGGRDRTVRLWKIPEESQLIFR---------------------GGEGSIDCV 333 (479)
T ss_pred HHHHHhCCccceeeechhccc---ceEEeccccceeEEEeccccceeeee---------------------CCCCCeeeE
Confidence 8888877765 4455444432 24555669999999999554433321 122378899
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCc-----------cceEEEEEeeCCCEEEEeeCCCeEEEEeCcCC
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGA-----------AVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~ 248 (551)
+|-.+. ++++|+.+|.|.+|++...+++.+...+|. ..|++++..|...++++|+.+|.||+|-+-..
T Consensus 334 ~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 334 AFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEeccc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 987654 699999999999999999999888766653 27899999999999999999999999982211
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEe
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD 323 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd 323 (551)
.+ ....+..+. ..+.|+ +++|+++|++|++|... +..+--|-
T Consensus 413 ----~r---------------------~i~~l~~ls-~~GfVN-----sl~f~~sgk~ivagiGk--EhRlGRW~ 454 (479)
T KOG0299|consen 413 ----LR---------------------AINLLYSLS-LVGFVN-----SLAFSNSGKRIVAGIGK--EHRLGRWW 454 (479)
T ss_pred ----cc---------------------ccceeeecc-cccEEE-----EEEEccCCCEEEEeccc--ccccceee
Confidence 00 011111221 334454 89999999988777542 44444443
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-23 Score=192.93 Aligned_cols=264 Identities=19% Similarity=0.221 Sum_probs=197.7
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC-CCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS-DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
|+.+||+.+|.-.-.+..-.....-.+-+. .+.|++++.. -..|.+|.+..........- ..++|.+|+-+|+|.
T Consensus 19 ~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v--~Pg~v~al~s~n~G~ 94 (476)
T KOG0646|consen 19 NCIVWDLRTGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV--LPGPVHALASSNLGY 94 (476)
T ss_pred ceeEEecCCCceeEEecCcccccchhhhhh--chhheeeecccCccccccccCchhhhhhhcc--cccceeeeecCCCce
Confidence 678888888854333332100011111122 2356666644 35789999875544432211 268899999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
+|+.|+..+.|.+|.+.+|..+..+..|-.
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-------------------------------------------------- 124 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHYQ-------------------------------------------------- 124 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhcc--------------------------------------------------
Confidence 999998999999999999998877755432
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECC---------CCcEEEeeeccCccceEEEEEeeCC--C
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK---------SNQIRALVPVSGAAVIKNIVFSRNG--Q 229 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~---------~~~~~~~~~~~~~~~i~~l~~s~~g--~ 229 (551)
.|+|+.|+.||.+|++|+.||.|.+|.+. +-+++..+. .|.-+|+.+...+.| .
T Consensus 125 --------------~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~ 189 (476)
T KOG0646|consen 125 --------------SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNA 189 (476)
T ss_pred --------------ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccc
Confidence 89999999999999999999999999864 233455554 789999999988753 5
Q ss_pred EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEE
Q 008844 230 YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIA 309 (551)
Q Consensus 230 ~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~ 309 (551)
+|+|++.|.++++||+.+ +..+..+ .+...+. +++++|-++.+++
T Consensus 190 rl~TaS~D~t~k~wdlS~-----------------------------g~LLlti-~fp~si~-----av~lDpae~~~yi 234 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSL-----------------------------GVLLLTI-TFPSSIK-----AVALDPAERVVYI 234 (476)
T ss_pred eEEEecCCceEEEEEecc-----------------------------ceeeEEE-ecCCcce-----eEEEcccccEEEe
Confidence 799999999999999322 2222222 2333444 9999999999999
Q ss_pred eeccCCcceEEEEecC-----------------CceeEEEecCCC--ceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 310 GSASKGEHKIYIWDRA-----------------GYLVKILEGPKE--ALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 310 gs~~~~dg~I~iwd~~-----------------~~~~~~l~~h~~--~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
|+. +|.|++.++. +..+..+.||.+ +|++++.+-||.+|++|+.||.|+|||+.+.+.
T Consensus 235 Gt~---~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 235 GTE---EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cCC---cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 999 9999998765 234566788988 999999999999999999999999999998775
Q ss_pred ce
Q 008844 371 WS 372 (551)
Q Consensus 371 ~~ 372 (551)
.+
T Consensus 312 iR 313 (476)
T KOG0646|consen 312 IR 313 (476)
T ss_pred HH
Confidence 54
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-23 Score=192.04 Aligned_cols=248 Identities=15% Similarity=0.233 Sum_probs=190.9
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+..| -..|+||.|+-||.+|+|||.||.|.+|.+.+-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-- 155 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL-- 155 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCccEEEEEEEee--
Confidence 4688999999999999999989999999999999999999655 999999999999999999999999999986321
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
+.....+.. ........|..+|+.+..
T Consensus 156 v~a~~~~~~-----------------------------------------------------~p~~~f~~HtlsITDl~i 182 (476)
T KOG0646|consen 156 VSADNDHSV-----------------------------------------------------KPLHIFSDHTLSITDLQI 182 (476)
T ss_pred cccccCCCc-----------------------------------------------------cceeeeccCcceeEEEEe
Confidence 111100000 001112233447777776
Q ss_pred eeCC--CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 182 NKYG--DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 182 s~~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
.+.| .++++++.|.++++||+..+.++..+ .....|.+++.+|-++.+++|+.+|.|.+.++........ .+.
T Consensus 183 g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti--~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~-~v~-- 257 (476)
T KOG0646|consen 183 GSGGTNARLYTASEDRTIKLWDLSLGVLLLTI--TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA-GVN-- 257 (476)
T ss_pred cCCCccceEEEecCCceEEEEEeccceeeEEE--ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc-ccc--
Confidence 6554 68999999999999999999998887 6778999999999999999999999999988332211000 000
Q ss_pred hccCCCCCcceeeeeccceeeeeeccccc--ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQD--SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK 336 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~ 336 (551)
.+........+..+.+|.+ .|+ +++++-||..|++|+. ||.|.|||+. .++++.+..-.
T Consensus 258 ----------~k~~~~~~t~~~~~~Gh~~~~~IT-----cLais~DgtlLlSGd~---dg~VcvWdi~S~Q~iRtl~~~k 319 (476)
T KOG0646|consen 258 ----------QKGRHEENTQINVLVGHENESAIT-----CLAISTDGTLLLSGDE---DGKVCVWDIYSKQCIRTLQTSK 319 (476)
T ss_pred ----------ccccccccceeeeeccccCCccee-----EEEEecCccEEEeeCC---CCCEEEEecchHHHHHHHhhhc
Confidence 0001111334566777777 666 9999999999999999 9999999999 88888888678
Q ss_pred CceEEEEEecCCC
Q 008844 337 EALIDLAWHPVHP 349 (551)
Q Consensus 337 ~~v~~l~~sp~~~ 349 (551)
++|+.+.+.|-.+
T Consensus 320 gpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 320 GPVTNLQINPLER 332 (476)
T ss_pred cccceeEeecccc
Confidence 8999999977644
No 122
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=2.7e-23 Score=182.61 Aligned_cols=249 Identities=15% Similarity=0.291 Sum_probs=191.9
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC------------C------eEEEEEEcC-CCeeEEEEecCCCCCcE
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK------------G------EKITRIVLQ-QTPLQARLHPGSSTPSL 125 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~------------~------~~~~~~~~~-~~~~~~~~~p~~~~~~~ 125 (551)
.|.+++.+.+|++||.++++|+.|..|+|.|++. | -.++++-.| ..+..+.|+|... +
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~---I 186 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET---I 186 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh---e
Confidence 4599999999999999999999999999999861 1 123444333 4577899999754 8
Q ss_pred EEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC
Q 008844 126 CLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN 205 (551)
Q Consensus 126 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~ 205 (551)
+++++.|++++++|+...........+.+ ..++.++.|+|.|.+|++|+....+++||+.+-
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd------------------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQD------------------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhc------------------cceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence 99999999999999987654332222221 128999999999999999999999999999998
Q ss_pred cEEEee--eccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee
Q 008844 206 QIRALV--PVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF 283 (551)
Q Consensus 206 ~~~~~~--~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (551)
++...- ...|.+.|+++.+++.|++.++++.||.|+||| ....+|+..+
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD-----------------------------GVS~rCv~t~ 299 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD-----------------------------GVSNRCVRTI 299 (430)
T ss_pred eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec-----------------------------cccHHHHHHH
Confidence 884433 236889999999999999999999999999999 2235666665
Q ss_pred cccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC-----CceEEEEEecCCCeEEEEcC-
Q 008844 284 REFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK-----EALIDLAWHPVHPIIVSVSL- 356 (551)
Q Consensus 284 ~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~-----~~v~~l~~sp~~~~l~s~s~- 356 (551)
..-.+ ...+.+..|..+|+||++.+. |..+++|.+. |.++..+.|-. .--+...|+....|++.-..
T Consensus 300 ~~AH~---gsevcSa~Ftkn~kyiLsSG~---DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa 373 (430)
T KOG0640|consen 300 GNAHG---GSEVCSAVFTKNGKYILSSGK---DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA 373 (430)
T ss_pred HhhcC---CceeeeEEEccCCeEEeecCC---cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc
Confidence 54222 122337889999999999999 9999999999 99998887642 11244556666667666654
Q ss_pred CCcEEEEecCCCC
Q 008844 357 TGWVYIWAKDYTE 369 (551)
Q Consensus 357 dg~i~iW~~~~~~ 369 (551)
.+.+.-||-.+..
T Consensus 374 s~slcsWdaRtad 386 (430)
T KOG0640|consen 374 SNSLCSWDARTAD 386 (430)
T ss_pred cCceeeccccchh
Confidence 6678888877654
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=5.5e-23 Score=198.89 Aligned_cols=251 Identities=13% Similarity=0.201 Sum_probs=209.5
Q ss_pred ccccccCCCCccceeecccccceEEE-EEEcC-CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKC-IAFNR-RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~-l~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
++||+....++.+......|.+-|.+ ++|-+ ++-.|++|+.|++|.+|...+...+.++.+| ...|.|++...++.
T Consensus 37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH--~snVC~ls~~~~~~ 114 (745)
T KOG0301|consen 37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH--KSNVCSLSIGEDGT 114 (745)
T ss_pred eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcc--ccceeeeecCCcCc
Confidence 57898888877776666667777777 88875 4446999999999999999999999999876 99999999887777
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
|+|||.|.++++|.. +++...+.+|.
T Consensus 115 -~iSgSWD~TakvW~~--~~l~~~l~gH~--------------------------------------------------- 140 (745)
T KOG0301|consen 115 -LISGSWDSTAKVWRI--GELVYSLQGHT--------------------------------------------------- 140 (745)
T ss_pred -eEecccccceEEecc--hhhhcccCCcc---------------------------------------------------
Confidence 999999999999965 45544444443
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
..|.+++.-|.+ .+++|+.|.+|++|.- ++.+.++. +|...|+++++-+++ .+++++.||.|
T Consensus 141 -------------asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~I 202 (745)
T KOG0301|consen 141 -------------ASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSI 202 (745)
T ss_pred -------------hheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceE
Confidence 267777777777 7999999999999986 66777777 799999999999775 58899999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
++|++ .+.++....+|+..+. ++...+++..|++++. |++++
T Consensus 203 r~w~~------------------------------~ge~l~~~~ghtn~vY-----sis~~~~~~~Ivs~gE---Drtlr 244 (745)
T KOG0301|consen 203 RLWDL------------------------------DGEVLLEMHGHTNFVY-----SISMALSDGLIVSTGE---DRTLR 244 (745)
T ss_pred EEEec------------------------------cCceeeeeeccceEEE-----EEEecCCCCeEEEecC---CceEE
Confidence 99992 2678889999999998 7777888899999999 99999
Q ss_pred EEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 321 IWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 321 iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
||+.. .+++.+..+...|.++.+-++|. |++|+.||.||||....
T Consensus 245 iW~~~-e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 245 IWKKD-ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EeecC-ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 99985 77788887777999999988886 55666699999999874
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=6.5e-24 Score=190.27 Aligned_cols=259 Identities=15% Similarity=0.243 Sum_probs=203.7
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
|.|||..+......+.. |.|.|..|++.. ..+++++.|.+|+.|.++. ..++++.+ ...+..|.-+..+..+
T Consensus 91 VkiWnlsqR~~~~~f~A--H~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg---~s~~~gIdh~~~~~~F 162 (433)
T KOG0268|consen 91 VKIWNLSQRECIRTFKA--HEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG---KSVYLGIDHHRKNSVF 162 (433)
T ss_pred EEEEehhhhhhhheeec--ccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec---cccccccccccccccc
Confidence 78999998887777776 889999999987 6777888999999999874 57777765 4677888877778888
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 161 (551)
+|||. .|.|||.+...++..+....+ +.++.|+|.. ..++.+|..|+.|.+||++++.+..-.+..
T Consensus 163 aTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE--TsILas~~sDrsIvLyD~R~~~Pl~KVi~~--------- 229 (433)
T KOG0268|consen 163 ATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVE--TSILASCASDRSIVLYDLRQASPLKKVILT--------- 229 (433)
T ss_pred cccCc--eeeecccccCCccceeecCCCceeEEecCCCc--chheeeeccCCceEEEecccCCccceeeee---------
Confidence 99875 599999998899998887654 7889999975 347778889999999999998765332211
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEE
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIR 241 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~ 241 (551)
...+.++|+|.+-.|++|+.|..++.||++....-......|.+.|.++.|+|.|+-+++||.|.+||
T Consensus 230 ------------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 230 ------------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred ------------ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEE
Confidence 16678999998888999999999999999986653333348999999999999999999999999999
Q ss_pred EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEE
Q 008844 242 IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYI 321 (551)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~i 321 (551)
||.+.... .+.+...+..+ .|. ++.||.|.+||++|+. |+.|++
T Consensus 298 If~~~~~~---------------------------SRdiYhtkRMq-~V~-----~Vk~S~Dskyi~SGSd---d~nvRl 341 (433)
T KOG0268|consen 298 IFPVNHGH---------------------------SRDIYHTKRMQ-HVF-----CVKYSMDSKYIISGSD---DGNVRL 341 (433)
T ss_pred EeecCCCc---------------------------chhhhhHhhhh-eee-----EEEEeccccEEEecCC---Ccceee
Confidence 99822111 11111111111 222 8999999999999999 999999
Q ss_pred EecC-CceeE
Q 008844 322 WDRA-GYLVK 330 (551)
Q Consensus 322 wd~~-~~~~~ 330 (551)
|... .+.+.
T Consensus 342 Wka~Aseklg 351 (433)
T KOG0268|consen 342 WKAKASEKLG 351 (433)
T ss_pred eecchhhhcC
Confidence 9877 44333
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.9e-22 Score=190.60 Aligned_cols=255 Identities=16% Similarity=0.271 Sum_probs=199.5
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce-eeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI-AKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
...|.|+||+.+.+.||.+-.+|.|.||++..+=. ...+.++ ....|-+|+|++ +..|++.+.+|.|.-||+.++++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~-~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP-EDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC-CCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 36799999999999999999999999999986543 3344443 467899999995 55689999999999999999988
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
...+..... .|.+++.
T Consensus 103 ~~~~d~~gg----------------------------------------------------------------~IWsiai 118 (691)
T KOG2048|consen 103 KYNIDSNGG----------------------------------------------------------------AIWSIAI 118 (691)
T ss_pred eEEecCCCc----------------------------------------------------------------ceeEEEe
Confidence 777654332 7889999
Q ss_pred eeCCCEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhh
Q 008844 182 NKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIE 260 (551)
Q Consensus 182 s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (551)
+|.+..+++|+.||.++.++...++....... ...+.|.++.|+|++..|++|+.||.|++||...+...-
T Consensus 119 ~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-------- 190 (691)
T KOG2048|consen 119 NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-------- 190 (691)
T ss_pred CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE--------
Confidence 99999999999999889999888877444332 335899999999999999999999999999943221000
Q ss_pred ccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCce
Q 008844 261 KGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEAL 339 (551)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v 339 (551)
.....+.+....-..+-| ++.|-.+ ..|++|.. .|.|.+||.. |.++..+..|.+.|
T Consensus 191 -----------------~~~~~~d~l~k~~~~iVW-Sv~~Lrd-~tI~sgDS---~G~V~FWd~~~gTLiqS~~~h~adV 248 (691)
T KOG2048|consen 191 -----------------IITMQLDRLSKREPTIVW-SVLFLRD-STIASGDS---AGTVTFWDSIFGTLIQSHSCHDADV 248 (691)
T ss_pred -----------------EeeecccccccCCceEEE-EEEEeec-CcEEEecC---CceEEEEcccCcchhhhhhhhhcce
Confidence 000011112221223345 5555544 46778887 8999999999 99999999999999
Q ss_pred EEEEEecCCCeEEEEcCCCcEEEEecCCCCc-cee
Q 008844 340 IDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN-WSA 373 (551)
Q Consensus 340 ~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~-~~~ 373 (551)
.+|+..+++.+++++|.|+.|.-+...+... |..
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence 9999999999999999999999998887654 763
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=7.9e-23 Score=197.85 Aligned_cols=235 Identities=16% Similarity=0.296 Sum_probs=197.7
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEE-EEecC-CCCEEEEEeCCCCEEEEEcCCC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITS-VCWSK-YGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~-l~~s~-~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
|...|..+++.+. ..+++++.||++++|+-..++.+.+....+|.+-|.. +++.+ ++-.|++|+.|.+|.+|.+...
T Consensus 13 H~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 13 HKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred CccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence 7778888887654 4889999999999999887776664444445777776 88875 4456999999999999999998
Q ss_pred eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 100 EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.++..+.+|.. .|+|+
T Consensus 92 ~P~~~LkgH~s----------------------------------------------------------------nVC~l 107 (745)
T KOG0301|consen 92 EPLYTLKGHKS----------------------------------------------------------------NVCSL 107 (745)
T ss_pred Cchhhhhcccc----------------------------------------------------------------ceeee
Confidence 88888877764 67777
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
....++. +++|+.|.++++|-... +...+. +|...|.++++-|.+ .++|||.|.+|++|.
T Consensus 108 s~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~-gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--------------- 167 (745)
T KOG0301|consen 108 SIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQ-GHTASVWAVASLPEN-TYVTGSADKTIKLWK--------------- 167 (745)
T ss_pred ecCCcCc-eEecccccceEEecchh--hhcccC-CcchheeeeeecCCC-cEEeccCcceeeecc---------------
Confidence 7766676 99999999999997643 333454 999999999999988 899999999999998
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCce
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEAL 339 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v 339 (551)
++.+++++.+|.+.|. .+++-+++.+| +++. ||.|++|++.|+++..+.||+.-|
T Consensus 168 ----------------~~~~l~tf~gHtD~VR-----gL~vl~~~~fl-ScsN---Dg~Ir~w~~~ge~l~~~~ghtn~v 222 (745)
T KOG0301|consen 168 ----------------GGTLLKTFSGHTDCVR-----GLAVLDDSHFL-SCSN---DGSIRLWDLDGEVLLEMHGHTNFV 222 (745)
T ss_pred ----------------CCchhhhhccchhhee-----eeEEecCCCeE-eecC---CceEEEEeccCceeeeeeccceEE
Confidence 3677899999999998 88888887665 5555 899999999999999999999999
Q ss_pred EEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 340 IDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 340 ~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
.++...+++..++++|.|++++||+..
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC
Confidence 999988888999999999999999976
No 127
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.6e-21 Score=185.38 Aligned_cols=334 Identities=16% Similarity=0.170 Sum_probs=224.7
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
|.-||+.+++....+.. ..+.|.+++.+|.++.++.||.||.+..++...+.+.........++.|.+|+|+|++..|
T Consensus 92 i~EwDl~~lk~~~~~d~--~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDS--NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred EEEEecccCceeEEecC--CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 45689988876655554 5689999999999999999999998888888877765544333336899999999999999
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEE-----cCCC----eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIV-----LQQT----PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVP 153 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~----~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 153 (551)
++|+.||.|++||+..+..+.... .... +.++.+..+ ..++++...|++.+||...+......
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd----~tI~sgDS~G~V~FWd~~~gTLiqS~---- 241 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD----STIASGDSAGTVTFWDSIFGTLIQSH---- 241 (691)
T ss_pred EecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec----CcEEEecCCceEEEEcccCcchhhhh----
Confidence 999999999999999998777322 2221 344555443 37999999999999999988765332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE---EEeeeccCccceEEEEEeeCCCE
Q 008844 154 DVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI---RALVPVSGAAVIKNIVFSRNGQY 230 (551)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~l~~s~~g~~ 230 (551)
..|...|.|++.+++++++++++.|+.|..|...+... .......|...|.+++..++ .
T Consensus 242 ----------------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~ 303 (691)
T KOG2048|consen 242 ----------------SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--A 303 (691)
T ss_pred ----------------hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--e
Confidence 22334899999999999999999999999998887754 22233478889999999877 8
Q ss_pred EEEeeCCCeEEEEeCcCCccccchhhhh--hhccCCCCCcceeee-ec---cceeeee----eccccccc--------ce
Q 008844 231 LLTNSNDRTIRIYDNLLPLKNGLEALVD--IEKGIAEPNGIEKMK-MV---GSKCLAL----FREFQDSI--------TK 292 (551)
Q Consensus 231 l~t~s~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~---~~~~~~~----~~~~~~~v--------~~ 292 (551)
|++|+.|.++.+--... .......... .............+. .. +...... ..++.... ..
T Consensus 304 l~sgG~d~~l~i~~s~~-~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~ 382 (691)
T KOG2048|consen 304 LISGGRDFTLAICSSRE-FKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK 382 (691)
T ss_pred EEecceeeEEEEccccc-cCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc
Confidence 99999999988765221 1110000000 000000011110000 00 0000000 00000000 01
Q ss_pred eeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--Cc-------------------------------------------
Q 008844 293 MHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GY------------------------------------------- 327 (551)
Q Consensus 293 ~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~------------------------------------------- 327 (551)
..+.+.++||+|++|+.++- ..++||.++ +.
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~----~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el 458 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTV----SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFEL 458 (691)
T ss_pred cceeeeccCCCCCEEEEeec----cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEe
Confidence 12348899999999999884 344555443 10
Q ss_pred ------eeEEE--ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 328 ------LVKIL--EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 328 ------~~~~l--~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
.+..+ ++-...|..|..+|+|+|||+.+..|.|.+|++.+.+
T Consensus 459 ~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 459 ETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE 508 (691)
T ss_pred cCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce
Confidence 00000 0122468899999999999999999999999999876
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.8e-21 Score=171.24 Aligned_cols=259 Identities=14% Similarity=0.249 Sum_probs=186.7
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC--C--ceeeEeecccccccEEEEEecC--CCCEEEEEeCCCCEEEEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET--R--GIAKELRDKECVAAITSVCWSK--YGHRILVSAADKSLTLWD 95 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~--~--~~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~vwd 95 (551)
|..-|+|+.|.+.|+.+|+|+.|++|+|||... + .+....+.| .+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah--~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAH--DGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEec--CCcEEEEEecCccccceEEEEecCCceeeee
Confidence 678899999999999999999999999999643 2 344455554 99999999976 389999999999999997
Q ss_pred cCCCeEEEEEEcCCC--eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQT--PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 96 ~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
=.. ..+..+.. +....+. + ..
T Consensus 90 E~~----~~~~~~~~~Wv~~ttl~-D----------------------------------------------------sr 112 (361)
T KOG2445|consen 90 EQE----KSEEAHGRRWVRRTTLV-D----------------------------------------------------SR 112 (361)
T ss_pred ecc----cccccccceeEEEEEee-c----------------------------------------------------CC
Confidence 421 11111110 0000000 0 01
Q ss_pred CCceEEEEeeC--CCEEEEEecCceEEEEECCCCcEEEeee------------ccCccceEEEEEeeC---CCEEEEeeC
Q 008844 174 FTPTAACFNKY--GDLVYVGNSKGEILVIDHKSNQIRALVP------------VSGAAVIKNIVFSRN---GQYLLTNSN 236 (551)
Q Consensus 174 ~~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~------------~~~~~~i~~l~~s~~---g~~l~t~s~ 236 (551)
..|+.++|.|. |-.+++++.||.|+||+....-.+.... ..+..+..|+.|+|. ..+|++|+.
T Consensus 113 ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~ 192 (361)
T KOG2445|consen 113 SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSD 192 (361)
T ss_pred cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcc
Confidence 16777888775 5678999999999999876543322221 134567889999974 457888876
Q ss_pred C-----CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC----CCEE
Q 008844 237 D-----RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD----GEWV 307 (551)
Q Consensus 237 D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d----g~~l 307 (551)
+ +.+.||..... .+....+..+.+|.++|+ .++|.|+ -..|
T Consensus 193 e~a~~~~~~~Iye~~e~-------------------------~rKw~kva~L~d~~dpI~-----di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 193 EDAPHLNKVKIYEYNEN-------------------------GRKWLKVAELPDHTDPIR-----DISWAPNIGRSYHLL 242 (361)
T ss_pred cCCccccceEEEEecCC-------------------------cceeeeehhcCCCCCcce-----eeeeccccCCceeeE
Confidence 5 47888871110 000122455668889998 8888884 3578
Q ss_pred EEeeccCCcceEEEEecCC---------------------ceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 308 IAGSASKGEHKIYIWDRAG---------------------YLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 308 ~~gs~~~~dg~I~iwd~~~---------------------~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
|+++. || |+||.+.. +.+..+.+|.+.|..+.|+-.|.+|++.|.||.|++|...
T Consensus 243 AvA~k---Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 243 AVATK---DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeec---Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99998 88 99999761 2345577899999999999999999999999999999988
Q ss_pred CCCccee
Q 008844 367 YTENWSA 373 (551)
Q Consensus 367 ~~~~~~~ 373 (551)
....|.+
T Consensus 319 y~n~~kC 325 (361)
T KOG2445|consen 319 YNNLWKC 325 (361)
T ss_pred hhhhhee
Confidence 7766653
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=5.3e-24 Score=206.70 Aligned_cols=233 Identities=16% Similarity=0.326 Sum_probs=203.9
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
.|...|.|+..-..++.+++|+.|..+-+|.+.....+..|.+| ..+|.+|.|++...+|++|+.+|+|++||+..++
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~h--espIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGH--ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeecc--CCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 37788889888777899999999999999998776666667665 9999999999999999999999999999999888
Q ss_pred EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 101 KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
.++++.++.. .+..+.
T Consensus 104 ~vrtLtgh~~----------------------------------------------------------------~~~sv~ 119 (825)
T KOG0267|consen 104 IVRTLTGHLL----------------------------------------------------------------NITSVD 119 (825)
T ss_pred hhhhhhcccc----------------------------------------------------------------Ccceee
Confidence 8777665542 677888
Q ss_pred EeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhh
Q 008844 181 FNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIE 260 (551)
Q Consensus 181 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (551)
|+|.+.+++.|+.|+.+.+||++...+...+. .|...+..+.|+|+|++++.++.|.+++|||
T Consensus 120 f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d---------------- 182 (825)
T KOG0267|consen 120 FHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDGRWVASGGEDNTVKIWD---------------- 182 (825)
T ss_pred eccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCCceeeccCCcceeeeec----------------
Confidence 99999999999999999999999888888887 5999999999999999999999999999999
Q ss_pred ccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCce
Q 008844 261 KGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEAL 339 (551)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v 339 (551)
...++.+..|..|...+. .+-|.|..-+++.|+. |++|++||++ .+.+.........|
T Consensus 183 -------------~~agk~~~ef~~~e~~v~-----sle~hp~e~Lla~Gs~---d~tv~f~dletfe~I~s~~~~~~~v 241 (825)
T KOG0267|consen 183 -------------LTAGKLSKEFKSHEGKVQ-----SLEFHPLEVLLAPGSS---DRTVRFWDLETFEVISSGKPETDGV 241 (825)
T ss_pred -------------cccccccccccccccccc-----ccccCchhhhhccCCC---CceeeeeccceeEEeeccCCccCCc
Confidence 222556677888888888 7789999999999999 9999999999 88888888778899
Q ss_pred EEEEEecCCCeEEEEcCC
Q 008844 340 IDLAWHPVHPIIVSVSLT 357 (551)
Q Consensus 340 ~~l~~sp~~~~l~s~s~d 357 (551)
.+++|+|++..+++|...
T Consensus 242 ~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeeeecCCceeeecCchh
Confidence 999999999988887654
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.8e-22 Score=173.44 Aligned_cols=245 Identities=15% Similarity=0.165 Sum_probs=187.8
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
|++||.... +....+.|..++.+++|.+ ...+++|+.||.|+.+|+.++.....- .|..+|.||.+++-...+
T Consensus 37 lrlYdv~~~---~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ig---th~~~i~ci~~~~~~~~v 109 (323)
T KOG1036|consen 37 LRLYDVPAN---SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIG---THDEGIRCIEYSYEVGCV 109 (323)
T ss_pred EEEEeccch---hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeec---cCCCceEEEEeeccCCeE
Confidence 344444444 3444566889999999987 567889999999999999988754433 358999999999988899
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
++|+.|++|++||.+.......+.....++++...-+ .+++++.+..+.+||+++......
T Consensus 110 IsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~-----~LvVg~~~r~v~iyDLRn~~~~~q-------------- 170 (323)
T KOG1036|consen 110 ISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGN-----RLVVGTSDRKVLIYDLRNLDEPFQ-------------- 170 (323)
T ss_pred EEcccCccEEEEeccccccccccccCceEEEEeccCC-----EEEEeecCceEEEEEcccccchhh--------------
Confidence 9999999999999987666666666666666655533 789999999999999998765321
Q ss_pred CCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC----cEEEeeeccC---------ccceEEEEEeeCCC
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN----QIRALVPVSG---------AAVIKNIVFSRNGQ 229 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~----~~~~~~~~~~---------~~~i~~l~~s~~g~ 229 (551)
......++.+.|+++-|++.-+++++-+|.|.+=.+... .....+. .| --+|++|+|+|-..
T Consensus 171 ----~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk-CHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 171 ----RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK-CHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred ----hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE-eeecccCCceEEEEeceeEeccccc
Confidence 112233458999999999888999999999987666544 2222222 22 25799999999988
Q ss_pred EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEE
Q 008844 230 YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIA 309 (551)
Q Consensus 230 ~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~ 309 (551)
.|+||+.||.|.+||. ...+.+..+..+...|. .++|+.+|..||+
T Consensus 246 tfaTgGsDG~V~~Wd~-----------------------------~~rKrl~q~~~~~~SI~-----slsfs~dG~~LAi 291 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDL-----------------------------FNRKRLKQLAKYETSIS-----SLSFSMDGSLLAI 291 (323)
T ss_pred eEEecCCCceEEEccC-----------------------------cchhhhhhccCCCCceE-----EEEeccCCCeEEE
Confidence 9999999999999992 22455666777766676 8899999999999
Q ss_pred eec
Q 008844 310 GSA 312 (551)
Q Consensus 310 gs~ 312 (551)
++.
T Consensus 292 a~s 294 (323)
T KOG1036|consen 292 ASS 294 (323)
T ss_pred Eec
Confidence 986
No 131
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=9e-22 Score=173.65 Aligned_cols=215 Identities=19% Similarity=0.321 Sum_probs=173.3
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCC--EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGT--LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~--~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
+.|||.........+.. |.+.|+|+.|.+.-. .|++|+.||.|.||+.....++..+++| .+.|+.|+.+|.|+
T Consensus 65 I~IYDm~k~~qlg~ll~--HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H--~~~Vt~lsiHPS~K 140 (362)
T KOG0294|consen 65 IHIYDMRKRKQLGILLS--HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAH--KGQVTDLSIHPSGK 140 (362)
T ss_pred EEEEeccchhhhcceec--cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccc--ccccceeEecCCCc
Confidence 56777765554444443 889999999999765 8999999999999999999999999877 77799999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
+.++.+.|+.+++||+-.|+.-.......
T Consensus 141 LALsVg~D~~lr~WNLV~Gr~a~v~~L~~--------------------------------------------------- 169 (362)
T KOG0294|consen 141 LALSVGGDQVLRTWNLVRGRVAFVLNLKN--------------------------------------------------- 169 (362)
T ss_pred eEEEEcCCceeeeehhhcCccceeeccCC---------------------------------------------------
Confidence 99999999999999999887655444332
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
..+.+.|+|.|.+++++..+ .|-||.+.+..+...+ .....+.++.|. ++..|++|..|+.|
T Consensus 170 --------------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i--~~~~r~l~~~~l-~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 170 --------------KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI--ENPKRILCATFL-DGSELLVGGDNEWI 231 (362)
T ss_pred --------------cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh--hccccceeeeec-CCceEEEecCCceE
Confidence 34457888889988888766 5899999887776665 334567777776 56789999999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
++|| .....++..+..|...|..+ ..--.|++.||++++. ||.|+
T Consensus 232 ~~~D-----------------------------~ds~~~~~~~~AH~~RVK~i---~~~~~~~~~~lvTaSS---DG~I~ 276 (362)
T KOG0294|consen 232 SLKD-----------------------------TDSDTPLTEFLAHENRVKDI---ASYTNPEHEYLVTASS---DGFIK 276 (362)
T ss_pred EEec-----------------------------cCCCccceeeecchhheeee---EEEecCCceEEEEecc---CceEE
Confidence 9999 22355677888999988843 2223678899999999 99999
Q ss_pred EEecC
Q 008844 321 IWDRA 325 (551)
Q Consensus 321 iwd~~ 325 (551)
|||+.
T Consensus 277 vWd~~ 281 (362)
T KOG0294|consen 277 VWDID 281 (362)
T ss_pred EEEcc
Confidence 99998
No 132
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=177.07 Aligned_cols=293 Identities=14% Similarity=0.195 Sum_probs=219.7
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC------ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEE
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR------GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLW 94 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~------~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vw 94 (551)
.|.+.|.+|.||.++++||+|+.|..+++|.++.. +.+ .+.+|.|...|.||+|...+++|++|+.+++|.+.
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 37899999999999999999999999999998642 333 34466788999999999999999999999999999
Q ss_pred EcCCCeEEEEEEcCC---CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 95 DVLKGEKITRIVLQQ---TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 95 d~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
|+++.+.+..+.... .++.+..+|. ...+++.+.++.+.+||.+.......++....
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~---DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN----------------- 192 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPT---DNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN----------------- 192 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCC---CceEEEEecCceEEEEeccCCCCCCceeeecC-----------------
Confidence 999999888887655 6888888987 34889999999999999988763322221111
Q ss_pred CCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcE-EEeee----c-cCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 172 PPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQI-RALVP----V-SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 172 ~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~-~~~~~----~-~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.+.....+-|+|-. .+|++.+..|.+.+||++.... +.... + .....-.++.|+|+|..|++--.-..-.+||
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 11156778888877 6788899999999999986543 11110 0 1122346788999999988876655566777
Q ss_pred CcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc--ccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEE
Q 008844 245 NLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF--QDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
+.. .+|...-..| .+..+...+.+++|..|-. |++|+. +-.|+||
T Consensus 273 ~~S-----------------------------~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD---~~~i~~W 319 (609)
T KOG4227|consen 273 FIS-----------------------------QRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD---HWGIHIW 319 (609)
T ss_pred eec-----------------------------ccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCc---ccceEEE
Confidence 322 1222221221 2334444556889987654 889998 8889999
Q ss_pred ecC------C------------------ceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 323 DRA------G------------------YLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 323 d~~------~------------------~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.+. | ..+..|+||..-++.+.|+|...+|++.+....++||..-.
T Consensus 320 klP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 320 KLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 875 2 13456889999999999999999999999999999998654
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.9e-22 Score=187.98 Aligned_cols=243 Identities=15% Similarity=0.202 Sum_probs=197.2
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC---eEEEEEEc---CCCeeEEEEecCCCCCcEEEEeeCCCCcEEE
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG---EKITRIVL---QQTPLQARLHPGSSTPSLCLACPLSSAPMIV 138 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~---~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~ 138 (551)
.|..-|.++.+|...++++||+ .|.|+|||+... ..+..+.. ..-+..+.+.|++. .+++++.-.++.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr---tLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR---TLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc---eEEeccccceeeee
Confidence 5688899999999999999998 578999998543 23333322 23366788888865 68889999999999
Q ss_pred EcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccc
Q 008844 139 DLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAV 218 (551)
Q Consensus 139 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 218 (551)
|+......+-..... ..-...+++.+||.+..+++..||.|.|||+.+...+..++ +|...
T Consensus 493 DLAapTprikaelts------------------sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDG 553 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTS------------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDG 553 (705)
T ss_pred eccCCCcchhhhcCC------------------cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCC
Confidence 998876543211111 11156788999999999999999999999999999999998 89999
Q ss_pred eEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec--ccccccceeeee
Q 008844 219 IKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR--EFQDSITKMHWK 296 (551)
Q Consensus 219 i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~ 296 (551)
+.||.++++|..|.||+-|++||.||++. .+.+. .|...|.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlre--------------------------------grqlqqhdF~SQIf----- 596 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLRE--------------------------------GRQLQQHDFSSQIF----- 596 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhh--------------------------------hhhhhhhhhhhhhe-----
Confidence 99999999999999999999999999221 11222 3444455
Q ss_pred eeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 297 APCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
++.++|.+.||+.|.. ++.+.|....+.....+.-|...|.++.|.+.|+++++.+.|+.+..|....+..
T Consensus 597 SLg~cP~~dWlavGMe---ns~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGME---NSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred ecccCCCccceeeecc---cCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc
Confidence 8899999999999999 8889998888777778888999999999999999999999999999999887653
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=3.7e-21 Score=186.25 Aligned_cols=347 Identities=18% Similarity=0.213 Sum_probs=238.3
Q ss_pred CCCccceeecccccceEEEEEEcCCCC---EEEEEeCCCeEEEEeccCCc---------------------eeeEee---
Q 008844 10 QGDFPEVIEEYLEHGVMKCIAFNRRGT---LLAAGCSDGSCVIWDFETRG---------------------IAKELR--- 62 (551)
Q Consensus 10 ~~~~~~~l~~~~h~~~V~~l~fs~dg~---~latg~~dg~I~iwd~~~~~---------------------~~~~~~--- 62 (551)
+.++......-.|..-|.+|+|...+. +||+++.|..||||.+.-+. ....+.
T Consensus 178 ~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 178 ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence 455666666666889999999987554 89999999999999875322 111111
Q ss_pred -----cccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC--eEEEEEEcC------CCeeEEEEecCCCCCcEEEEe
Q 008844 63 -----DKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG--EKITRIVLQ------QTPLQARLHPGSSTPSLCLAC 129 (551)
Q Consensus 63 -----~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~------~~~~~~~~~p~~~~~~~~~~~ 129 (551)
..+|...|+++.|+|.+..|++++.|.++.+|...+. --+...+.. ..-+...|+|++ ..+++-
T Consensus 258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~---~~ii~~ 334 (764)
T KOG1063|consen 258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS---NVIIAH 334 (764)
T ss_pred ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC---CEEEEe
Confidence 1257999999999999999999999999999976544 333333322 135678889886 489999
Q ss_pred eCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE-E
Q 008844 130 PLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI-R 208 (551)
Q Consensus 130 ~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~ 208 (551)
+..|..++|-......... .....+|...|..++|+|.|.+|++.+.|.+-++|-.-..+. .
T Consensus 335 g~~Gg~hlWkt~d~~~w~~-----------------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w 397 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQ-----------------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW 397 (764)
T ss_pred cccCcEEEEeccCccceee-----------------ccccccccccceeeeecCCCCEEEEeccccceeeecccccccce
Confidence 9999999998333221111 112234555899999999999999999999999987652222 1
Q ss_pred Eee--eccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhcc-----------------------C
Q 008844 209 ALV--PVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKG-----------------------I 263 (551)
Q Consensus 209 ~~~--~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------------~ 263 (551)
..+ +..|...++|++|-+....+++|.....+|+|+. | ..-...+..+.+. .
T Consensus 398 HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a--P-k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 398 HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA--P-KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred eeecccccccccceeeehccCCceeeecccceeeeeecC--c-HHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 111 2368889999999986667888888899999982 1 1111111111110 0
Q ss_pred C--CCC-cce---eeeec---------------------cceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC--
Q 008844 264 A--EPN-GIE---KMKMV---------------------GSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK-- 314 (551)
Q Consensus 264 ~--~~~-~~~---~~~~~---------------------~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~-- 314 (551)
. ..+ +.. ..... --..+..+.+|...|. +++.+|+|++||+++...
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~-----~l~~s~~gnliASaCKS~~~ 549 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVY-----ALAISPTGNLIASACKSSLK 549 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEE-----EEEecCCCCEEeehhhhCCc
Confidence 0 000 000 00000 0011222334444554 999999999999987632
Q ss_pred CcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC---------------cce-eecCC
Q 008844 315 GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE---------------NWS-AFAPD 377 (551)
Q Consensus 315 ~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~---------------~~~-~~spd 377 (551)
....|++|++. ...+..|.+|.-.|+.|+||||+++|+++|.|.++.+|...... .|. .|+|+
T Consensus 550 ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 550 EHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred cceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 23579999999 77778899999999999999999999999999999999986542 122 58888
Q ss_pred cceecee
Q 008844 378 FKELEEN 384 (551)
Q Consensus 378 ~~~l~~~ 384 (551)
...++..
T Consensus 630 e~~FaTa 636 (764)
T KOG1063|consen 630 EKYFATA 636 (764)
T ss_pred cceeEEe
Confidence 7766543
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5.7e-24 Score=206.48 Aligned_cols=242 Identities=22% Similarity=0.368 Sum_probs=202.2
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQA 114 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 114 (551)
+.+++.+...-.+++|+... +.. |...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~--hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he----- 70 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVA--HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE----- 70 (825)
T ss_pred ccccceeeeeeccccccchh------hhh--hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC-----
Confidence 34455555566778888653 222 37778888876678899999999999999886655544444333
Q ss_pred EEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC
Q 008844 115 RLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK 194 (551)
Q Consensus 115 ~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d 194 (551)
..|.++.|++...+|++|+.+
T Consensus 71 -----------------------------------------------------------spIeSl~f~~~E~Llaagsas 91 (825)
T KOG0267|consen 71 -----------------------------------------------------------SPIESLTFDTSERLLAAGSAS 91 (825)
T ss_pred -----------------------------------------------------------CcceeeecCcchhhhcccccC
Confidence 288899999999999999999
Q ss_pred ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeee
Q 008844 195 GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKM 274 (551)
Q Consensus 195 g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (551)
|+|++||+...+.+.++. +|...+.++.|+|-+.|.+.++.|+.+.+||+
T Consensus 92 gtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~----------------------------- 141 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGEFFASGSTDTDLKIWDI----------------------------- 141 (825)
T ss_pred Cceeeeehhhhhhhhhhh-ccccCcceeeeccceEEeccccccccceehhh-----------------------------
Confidence 999999999999888876 89999999999999999999999999999992
Q ss_pred ccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEE
Q 008844 275 VGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVS 353 (551)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s 353 (551)
....|...+.+|...+. .+.|+|+|+|++.|+. |..++|||.. |+++..|.+|.+.+.++.|||..-++++
T Consensus 142 Rk~Gc~~~~~s~~~vv~-----~l~lsP~Gr~v~~g~e---d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 142 RKKGCSHTYKSHTRVVD-----VLRLSPDGRWVASGGE---DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred hccCceeeecCCcceeE-----EEeecCCCceeeccCC---cceeeeecccccccccccccccccccccccCchhhhhcc
Confidence 22457778888877777 8899999999999999 8999999999 9999999999999999999999999999
Q ss_pred EcCCCcEEEEecCCCCcc------------eeecCCcceeceece
Q 008844 354 VSLTGWVYIWAKDYTENW------------SAFAPDFKELEENEE 386 (551)
Q Consensus 354 ~s~dg~i~iW~~~~~~~~------------~~~spd~~~l~~~~~ 386 (551)
||.|++|++||+++.+.. .+|.|++..++.+.+
T Consensus 214 Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 999999999999975532 379999988876553
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6e-21 Score=190.62 Aligned_cols=254 Identities=15% Similarity=0.234 Sum_probs=194.8
Q ss_pred CccccccCCC-CccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 2 NAPIIDPLQG-DFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~~-~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
++++|+...- +.|+.+.. +...|.+++. ++.+|++|+.+++|.+|.+..+..-..+... +-++++++|+.+|+
T Consensus 36 ~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf--tlp~r~~~v~g~g~ 109 (933)
T KOG1274|consen 36 DIRKWKTNSDEEEPETIDI--SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARF--TLPIRDLAVSGSGK 109 (933)
T ss_pred ceEEeecCCcccCCchhhc--cCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeee--eccceEEEEecCCc
Confidence 4677876655 77777765 6677888776 4559999999999999999887765455444 78899999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
+++.||.|-.|++-++.+......++.+..
T Consensus 110 ~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-------------------------------------------------- 139 (933)
T KOG1274|consen 110 MIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-------------------------------------------------- 139 (933)
T ss_pred EEEeecCceeEEEEeccccchheeecccCC--------------------------------------------------
Confidence 999999999999999998888777776653
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-------cCccceEEEEEeeCCCEEEE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-------SGAAVIKNIVFSRNGQYLLT 233 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~l~~s~~g~~l~t 233 (551)
+|.++.|+|.+++||+.+.||.|+|||+.++.+..++.. .....+..++|+|+|..|++
T Consensus 140 --------------pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 140 --------------PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred --------------ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 889999999999999999999999999999887665532 11355778999999888998
Q ss_pred eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeecc
Q 008844 234 NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS 313 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~ 313 (551)
.+.|+.|.+|+. . +......+.. .-....++.+.|||+|+|||+++.
T Consensus 206 ~~~d~~Vkvy~r-~----------------------------~we~~f~Lr~---~~~ss~~~~~~wsPnG~YiAAs~~- 252 (933)
T KOG1274|consen 206 PPVDNTVKVYSR-K----------------------------GWELQFKLRD---KLSSSKFSDLQWSPNGKYIAASTL- 252 (933)
T ss_pred eccCCeEEEEcc-C----------------------------Cceeheeecc---cccccceEEEEEcCCCcEEeeecc-
Confidence 999999999981 1 1222222221 111111448999999999999999
Q ss_pred CCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEE
Q 008844 314 KGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIW 363 (551)
Q Consensus 314 ~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW 363 (551)
+|.|.|||.+.... .-....|++++|.|+.+-|-....-|...+|
T Consensus 253 --~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 253 --DGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred --CCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999983111 2234679999999999866555555554444
No 137
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=188.62 Aligned_cols=275 Identities=16% Similarity=0.221 Sum_probs=210.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 104 (551)
.|..++|-|||..|+.+. +..+.|||...|..+.++.+| ...|++++|+.+|+.+++|+.|+.|.+|+-. -+-+..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgH--KDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGH--KDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccc--cceEEEEEEccCCceeccCCCceeEEEeccc-ccceee
Confidence 789999999999888775 457999999999999999877 9999999999999999999999999999853 333455
Q ss_pred EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC
Q 008844 105 IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184 (551)
Q Consensus 105 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 184 (551)
+.....+.++.|+|... .++.+.-+..-+|.......... .....+.+++|+.|
T Consensus 90 YSH~D~IQCMsFNP~~h----~LasCsLsdFglWS~~qK~V~K~----------------------kss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH----QLASCSLSDFGLWSPEQKSVSKH----------------------KSSSRIICCSWTND 143 (1081)
T ss_pred eccCCeeeEeecCchHH----HhhhcchhhccccChhhhhHHhh----------------------hhheeEEEeeecCC
Confidence 66667788999999753 33333344455666554432211 11227899999999
Q ss_pred CCEEEEEecCceEEEEECCCCcEEEe-eeccCccceEEEEEeeCC-----CEEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 185 GDLVYVGNSKGEILVIDHKSNQIRAL-VPVSGAAVIKNIVFSRNG-----QYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 185 g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~l~~s~~g-----~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
|.+++.|..+|+|.|-+-........ -+.+.+.+|.+++|+|+. ..+++.....++.+|.+.
T Consensus 144 GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls------------ 211 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS------------ 211 (1081)
T ss_pred CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec------------
Confidence 99999999999999986543333222 233457899999999964 357777777777777621
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCc
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEA 338 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~ 338 (551)
+..+..-+...-.. .++.+-++|.|++.|+. ++.+.+|-..|-.+.++.....+
T Consensus 212 ------------------G~~Igk~r~L~FdP-----~CisYf~NGEy~LiGGs---dk~L~~fTR~GvrLGTvg~~D~W 265 (1081)
T KOG1538|consen 212 ------------------GKQIGKDRALNFDP-----CCISYFTNGEYILLGGS---DKQLSLFTRDGVRLGTVGEQDSW 265 (1081)
T ss_pred ------------------ceeecccccCCCCc-----hhheeccCCcEEEEccC---CCceEEEeecCeEEeecccccee
Confidence 11111111111111 17788899999999999 99999999889889888888889
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
|..++.+|++++++.|+.||+|-.|++-.
T Consensus 266 IWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 266 IWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 99999999999999999999999999864
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.1e-22 Score=181.95 Aligned_cols=260 Identities=18% Similarity=0.254 Sum_probs=205.7
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCC--CeEEEEEEcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLK--GEKITRIVLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
.++|++|.|+|...+|++|+.|++++||.+.. ...++.+.+. .++..+.|+|++. ..+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~--~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH--SVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc--eEEEecccceEEEEeecccc
Confidence 57899999999999999999999999998743 3455555554 4678899999764 37888999999999999888
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIV 223 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 223 (551)
+...+....... ...+..+..++++++|+..+..|.|++....+++.+..+ .-.+.|..++
T Consensus 291 k~~k~~~~~g~e-----------------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--KieG~v~~~~ 351 (514)
T KOG2055|consen 291 KVTKLKPPYGVE-----------------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--KIEGVVSDFT 351 (514)
T ss_pred ccccccCCCCcc-----------------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee--eeccEEeeEE
Confidence 765543222111 126778889999999999999999999999999998888 5678899999
Q ss_pred EeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC
Q 008844 224 FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD 303 (551)
Q Consensus 224 ~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d 303 (551)
|+.+++.|++++.+|.|.+||+.. ..|+..+.. ++.+... ++|.|++
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~-----------------------------~~~~~rf~D-~G~v~gt---s~~~S~n 398 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQ-----------------------------NSCLHRFVD-DGSVHGT---SLCISLN 398 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCC-----------------------------cceEEEEee-cCcccee---eeeecCC
Confidence 999999999999999999999322 344555443 2333333 7899999
Q ss_pred CCEEEEeeccCCcceEEEEecC-------CceeEEEecCCCceEEEEEecCCCeEEEEcC--CCcEEEEecCCCC---cc
Q 008844 304 GEWVIAGSASKGEHKIYIWDRA-------GYLVKILEGPKEALIDLAWHPVHPIIVSVSL--TGWVYIWAKDYTE---NW 371 (551)
Q Consensus 304 g~~l~~gs~~~~dg~I~iwd~~-------~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~--dg~i~iW~~~~~~---~~ 371 (551)
|.|||+|+. .|.|.|||.+ -+++..+..-...|++|+|+|+.++||.||. ...+++--+.+.. +|
T Consensus 399 g~ylA~GS~---~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf 475 (514)
T KOG2055|consen 399 GSYLATGSD---SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF 475 (514)
T ss_pred CceEEeccC---cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccC
Confidence 999999999 8999999965 3466666666788999999999999999886 6778887776533 23
Q ss_pred ------------eeecCCcceece
Q 008844 372 ------------SAFAPDFKELEE 383 (551)
Q Consensus 372 ------------~~~spd~~~l~~ 383 (551)
.+|+|.+-+++-
T Consensus 476 P~~n~~vg~vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 476 PTSNTKVGHVTCMAFSPNSGYLAV 499 (514)
T ss_pred CCCCCcccceEEEEecCCCceEEe
Confidence 278888877763
No 139
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.7e-21 Score=171.74 Aligned_cols=270 Identities=15% Similarity=0.156 Sum_probs=212.5
Q ss_pred ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCC
Q 008844 56 GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSA 134 (551)
Q Consensus 56 ~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~ 134 (551)
++++.+.+| ...|..++.......+.+++.|.+.+||.+++|.++..+.+|.. +.++.|++.+ .++++++.|++
T Consensus 139 ~lvre~~GH--kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~---~L~lTaSGD~t 213 (481)
T KOG0300|consen 139 RLVRELEGH--KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG---LLLLTASGDET 213 (481)
T ss_pred eehhhhccc--ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc---ceEEEccCCcc
Confidence 345556555 99999999887777899999999999999999999999999865 7789999864 48999999999
Q ss_pred cEEEEcCCCceeeeccc-----------cCCCCCC---------CCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC
Q 008844 135 PMIVDLSTGSTSILPIA-----------VPDVANG---------IAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK 194 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~-----------~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d 194 (551)
..||...-.-....+.. ..+..+. ............+|...|.+..|-..|+.+++++.|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 99997332211111000 0000000 001111222334566678888899999999999999
Q ss_pred ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeee
Q 008844 195 GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKM 274 (551)
Q Consensus 195 g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (551)
.+..+||+.++.++..+. +|....+.++-+|..+++++.+.|.+.|+||+. +.
T Consensus 294 RTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-ea------------------------- 346 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-EA------------------------- 346 (481)
T ss_pred ccceeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccch-hh-------------------------
Confidence 999999999999999887 899999999999999999999999999999932 21
Q ss_pred ccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEEEecCCCceEEEEEecCCCeEE
Q 008844 275 VGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPKEALIDLAWHPVHPIIV 352 (551)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~~l~ 352 (551)
...+..|.+|.+.|+ ++.|.-+. .+++|+. |.+|+|||+. ..++..+. ...+++.++.+..+++|+
T Consensus 347 --I~sV~VFQGHtdtVT-----S~vF~~dd-~vVSgSD---DrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 347 --IQSVAVFQGHTDTVT-----SVVFNTDD-RVVSGSD---DRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA 414 (481)
T ss_pred --cceeeeeccccccee-----EEEEecCC-ceeecCC---CceEEEeeeccccCcceeee-cCCccceeEeecCCceEE
Confidence 445788999999998 77887764 5678888 9999999999 67777777 467899999999999999
Q ss_pred EEcCCCcEEEEecCCCC
Q 008844 353 SVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 353 s~s~dg~i~iW~~~~~~ 369 (551)
.--.+..|++||++...
T Consensus 415 iPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eccCCceEEEEecCCCc
Confidence 98888999999998643
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=9e-21 Score=167.83 Aligned_cols=278 Identities=15% Similarity=0.248 Sum_probs=210.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCC-------c-----eeeEeecccccccEEEEEec-------CCCCEEEEEe
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETR-------G-----IAKELRDKECVAAITSVCWS-------KYGHRILVSA 86 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~-------~-----~~~~~~~~~h~~~V~~l~~s-------~~g~~l~s~s 86 (551)
...+.|||||..|++-+.|..+.+|++... . ....++.. ....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeecc
Confidence 456789999999999999999999987421 0 11122211 14567888885 5678899999
Q ss_pred CCCCEEEEEcCCCeEEEEEEcCC------CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC-CCceeeeccccCCCCCCC
Q 008844 87 ADKSLTLWDVLKGEKITRIVLQQ------TPLQARLHPGSSTPSLCLACPLSSAPMIVDLS-TGSTSILPIAVPDVANGI 159 (551)
Q Consensus 87 ~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~~ 159 (551)
.+.-|++||.-+|+....++.-. ...++.|+|++. -+.++....|+++|+. .|.--.......
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe----qlfaGykrcirvFdt~RpGr~c~vy~t~~------ 200 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE----QLFAGYKRCIRVFDTSRPGRDCPVYTTVT------ 200 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC----eEeecccceEEEeeccCCCCCCcchhhhh------
Confidence 99999999999999887776532 467899999985 5777888999999994 443211110000
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-C
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-D 237 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-D 237 (551)
........-+.|++|+|.. ..+++|+...++-||.-..+.++..+- +|.+.|+.++|.++|+.|++|+. |
T Consensus 201 -------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 201 -------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred -------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCC
Confidence 0011223378999999987 589999999999999998888888876 89999999999999999999987 7
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc-ccceeeeeeeEEcCCCCEEEEeeccCCc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD-SITKMHWKAPCFSGDGEWVIAGSASKGE 316 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~s~dg~~l~~gs~~~~d 316 (551)
-.|..||++.. ...+..+..|.. .-.++ -....|+|++|++|+. +
T Consensus 273 dkIl~WDiR~~----------------------------~~pv~~L~rhv~~TNQRI---~FDld~~~~~LasG~t---d 318 (406)
T KOG2919|consen 273 DKILCWDIRYS----------------------------RDPVYALERHVGDTNQRI---LFDLDPKGEILASGDT---D 318 (406)
T ss_pred CeEEEEeehhc----------------------------cchhhhhhhhccCccceE---EEecCCCCceeeccCC---C
Confidence 88999993321 222344444544 23322 2345789999999999 9
Q ss_pred ceEEEEecC--CceeEEEecCCCceEEEEEecCCCeEEEEcC
Q 008844 317 HKIYIWDRA--GYLVKILEGPKEALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 317 g~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~ 356 (551)
|.|++||+. |..+..+..|...++.++++|--+++|+++.
T Consensus 319 G~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 999999999 8888889999999999999999999999874
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.9e-22 Score=195.30 Aligned_cols=242 Identities=15% Similarity=0.342 Sum_probs=185.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce----eeEeecc-cccccEEEEEecC-CCCEEEEEeCCCCEEEEEcC
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI----AKELRDK-ECVAAITSVCWSK-YGHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~----~~~~~~~-~h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~ 97 (551)
..+.+|..+++-..|+.++. ..+.||.+..... ...+... .....+..+.|.. +.++|+|++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 56778888898888887764 4788887764321 1111111 0123455677864 46789999999999999986
Q ss_pred CC---eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 98 KG---EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 98 ~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
.. +.+..+. .|..
T Consensus 119 k~~rnk~l~~f~----------------------------------------------------------------EH~R 134 (839)
T KOG0269|consen 119 KSIRNKLLTVFN----------------------------------------------------------------EHER 134 (839)
T ss_pred ccccchhhhHhh----------------------------------------------------------------hhcc
Confidence 52 2222222 2333
Q ss_pred CceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCcccc
Q 008844 175 TPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 175 ~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
.++++.|++.. ++|++|+.||.|++||++..+...++. .....|+.+.|+|. +.+++++...|.+++||++.|
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp---- 209 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP---- 209 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCc----
Confidence 78888888776 789999999999999999998888776 67789999999995 678999999999999996655
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce--e
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL--V 329 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~--~ 329 (551)
.++...+..|.++|. ++.|+|++.|||+|+. |+.|+||+.. ++. +
T Consensus 210 ------------------------~r~~~k~~AH~GpV~-----c~nwhPnr~~lATGGR---DK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 210 ------------------------DRCEKKLTAHNGPVL-----CLNWHPNREWLATGGR---DKMVKIWDMTDSRAKPK 257 (839)
T ss_pred ------------------------hhHHHHhhcccCceE-----EEeecCCCceeeecCC---CccEEEEeccCCCccce
Confidence 567788899999998 8999999999999998 9999999998 333 3
Q ss_pred EEEecCCCceEEEEEecCCC-eEEEEcC--CCcEEEEecCCC
Q 008844 330 KILEGPKEALIDLAWHPVHP-IIVSVSL--TGWVYIWAKDYT 368 (551)
Q Consensus 330 ~~l~~h~~~v~~l~~sp~~~-~l~s~s~--dg~i~iW~~~~~ 368 (551)
..+. ...+|..|.|-|..+ .||+++. |-.|+|||+..+
T Consensus 258 ~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 258 HTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred eEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 3333 347899999999987 5777765 889999999864
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.8e-21 Score=181.35 Aligned_cols=281 Identities=12% Similarity=0.115 Sum_probs=199.5
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEE--eCCCeEEEEeccCC--ce--eeEeecccccccEEEEEec
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAG--CSDGSCVIWDFETR--GI--AKELRDKECVAAITSVCWS 76 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg--~~dg~I~iwd~~~~--~~--~~~~~~~~h~~~V~~l~~s 76 (551)
+.|||...-.....+..+.....+.++.|+.... |+++ +.|..|++|.-... .+ +..+.+. ....|.++.+
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd-~~~Cv~~~s~- 90 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD-NAFCVACASQ- 90 (673)
T ss_pred eEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc-hHHHHhhhhc-
Confidence 4677766433222222211223489999988764 4444 45778999965422 22 2222222 1233444444
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCC
Q 008844 77 KYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDV 155 (551)
Q Consensus 77 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 155 (551)
..|+++|+..++|+|||++...+.+.+..|.. +.++.++.. ..++++++..|.|.|..+.++........
T Consensus 91 --S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~---DeyiAsvs~gGdiiih~~~t~~~tt~f~~---- 161 (673)
T KOG4378|consen 91 --SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT---DEYIASVSDGGDIIIHGTKTKQKTTTFTI---- 161 (673)
T ss_pred --ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC---cceeEEeccCCcEEEEecccCccccceec----
Confidence 48999999999999999997666777776654 566666654 34889999999999999988765322111
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeeCCC-EEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC-CEEEE
Q 008844 156 ANGIAPSSRNKYSDGTPPFTPTAACFNKYGD-LVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG-QYLLT 233 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~t 233 (551)
.....+.-+.|++..+ +|.+++.+|.|.+||+....++..+...|..+...|+|+|.. .+|++
T Consensus 162 ---------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 162 ---------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred ---------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence 1112567889999885 456788999999999999988877777899999999999965 56788
Q ss_pred eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeecc
Q 008844 234 NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS 313 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~ 313 (551)
.+.|..|.+||+... +.. ...+...+++.++|+++|.+|++|+.
T Consensus 227 VG~Dkki~~yD~~s~-----------------------------~s~------~~l~y~~Plstvaf~~~G~~L~aG~s- 270 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQ-----------------------------AST------DRLTYSHPLSTVAFSECGTYLCAGNS- 270 (673)
T ss_pred ecccceEEEeecccc-----------------------------ccc------ceeeecCCcceeeecCCceEEEeecC-
Confidence 899999999993211 101 11112233448999999999999999
Q ss_pred CCcceEEEEecC--CceeEEEecCCCceEEEEEecCC
Q 008844 314 KGEHKIYIWDRA--GYLVKILEGPKEALIDLAWHPVH 348 (551)
Q Consensus 314 ~~dg~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~ 348 (551)
.|.|+.||++ ..++..+..|...|++|+|-|..
T Consensus 271 --~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 --KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 8999999999 77899999999999999997764
No 143
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-21 Score=188.63 Aligned_cols=239 Identities=15% Similarity=0.211 Sum_probs=190.0
Q ss_pred EEEec-CCCCEEEEEeCCCCEEEEEcCCCe------EEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 72 SVCWS-KYGHRILVSAADKSLTLWDVLKGE------KITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 72 ~l~~s-~~g~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
.+..+ |.++||+|||.||.|++|++.... .+..+..|.. +..+.+.-.+ ..+++++.|.++.+|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~---~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG---KTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC---CceEEecCCceEEEeecccC
Confidence 34443 467889999999999999985432 2444444443 2233333333 26999999999999998877
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE-eeCCCEEEEEecCceEEEEECCCCcE--EEe--------ee
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF-NKYGDLVYVGNSKGEILVIDHKSNQI--RAL--------VP 212 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~~g~~dg~i~i~d~~~~~~--~~~--------~~ 212 (551)
....+ .....|...|.|+++ -++..++|+|+-|+.|.+||+.++.. +.. +.
T Consensus 106 ~~~c~------------------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 106 NTFCM------------------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred cchhH------------------hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence 52111 112345558999999 88889999999999999999998722 221 22
Q ss_pred ccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccce
Q 008844 213 VSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITK 292 (551)
Q Consensus 213 ~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 292 (551)
.++...|++++.++.|..|++|+..+.|++|| ......+..+++|.+.|.
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD-----------------------------prt~~kimkLrGHTdNVr- 217 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD-----------------------------PRTCKKIMKLRGHTDNVR- 217 (735)
T ss_pred CCCccceeeeecCCcceEEEecCcccceEEec-----------------------------cccccceeeeeccccceE-
Confidence 25678899999999999999999999999999 223455667789999998
Q ss_pred eeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 293 MHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 293 ~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
.+..+.||+.+++++. ||+|++||+. ..++.++..|...|.++..+|+-..+++|+.||.|+.=++.+.
T Consensus 218 ----~ll~~dDGt~~ls~sS---DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 218 ----VLLVNDDGTRLLSASS---DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ----EEEEcCCCCeEeecCC---CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 8899999999999999 9999999999 8999999999999999999999999999999999999988873
No 144
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=1.2e-20 Score=182.88 Aligned_cols=318 Identities=14% Similarity=0.180 Sum_probs=211.2
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCC---EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGT---LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~---~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
+|.+|||........+.. |.++|+|+.|-|... ++++|+.|++|++|.+............+|...+.| ++..
T Consensus 35 ~Iav~dp~k~~i~t~l~G--H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c--v~a~ 110 (764)
T KOG1063|consen 35 AIAVADPEKILIVTTLDG--HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC--VVAR 110 (764)
T ss_pred eEEEeCcccceeEEeccC--CccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE--EEee
Confidence 467889887644444444 889999999999877 899999999999999986555555444434555544 4432
Q ss_pred CCEEEEEeCCCCEEEEEcCCCe--EEEEEEcCCC---eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccC
Q 008844 79 GHRILVSAADKSLTLWDVLKGE--KITRIVLQQT---PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVP 153 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 153 (551)
.....+.+.|+++.+||.+..+ +...+++... +.++.+.|+ ....+++.++.+..+.++.-...+...
T Consensus 111 ~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~-~~~~lla~Ggs~~~v~~~s~~~d~f~~------ 183 (764)
T KOG1063|consen 111 SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKN-NKTFLLACGGSKFVVDLYSSSADSFAR------ 183 (764)
T ss_pred eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhcc-CCcEEEEecCcceEEEEeccCCcceeE------
Confidence 2223333679999999985555 3333333322 345555552 222333334444455565544332211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC---EEEEEecCceEEEEECCCCc---------------------EE-
Q 008844 154 DVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD---LVYVGNSKGEILVIDHKSNQ---------------------IR- 208 (551)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l~~g~~dg~i~i~d~~~~~---------------------~~- 208 (551)
.....+|..-|.+++|...+. +|++++.|..|+||.+.-+. ..
T Consensus 184 ------------v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 184 ------------VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred ------------EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 122334555788888877654 78889999999999874322 11
Q ss_pred --E------eeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceee
Q 008844 209 --A------LVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCL 280 (551)
Q Consensus 209 --~------~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (551)
. .+..+|...|+++.|+|.+..|++++.|.++.+|..... ++..+
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~---------------------------tGiWv 304 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDEN---------------------------TGIWV 304 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCc---------------------------cceEE
Confidence 1 112378999999999999999999999999999981110 01111
Q ss_pred eeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC----CceeEEEecCCCceEEEEEecCCCeEEEEcC
Q 008844 281 ALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA----GYLVKILEGPKEALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 281 ~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~----~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~ 356 (551)
...+--.-.-....+-.+.|+|++..|++-+. .|..++|... ..+...+.||...|.+++|+|.|.+|+++|.
T Consensus 305 ~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~---~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~ 381 (764)
T KOG1063|consen 305 DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR---TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL 381 (764)
T ss_pred EEEEeecccccccceeeEEEcCCCCEEEEecc---cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc
Confidence 11111000011122337899999999999888 8999999844 3455667899999999999999999999999
Q ss_pred CCcEEEEecC-CCCcce
Q 008844 357 TGWVYIWAKD-YTENWS 372 (551)
Q Consensus 357 dg~i~iW~~~-~~~~~~ 372 (551)
|.+-||+..- ..+.|.
T Consensus 382 DQTTRlFa~wg~q~~wH 398 (764)
T KOG1063|consen 382 DQTTRLFARWGRQQEWH 398 (764)
T ss_pred ccceeeeccccccccee
Confidence 9999998766 334465
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.5e-20 Score=166.49 Aligned_cols=250 Identities=20% Similarity=0.229 Sum_probs=189.8
Q ss_pred EEEEEecCCCCEEEEEeCCCCEEEEEcCCC--------------eEEEEEEcCCCeeEEEEecC----CCCCcEEEEeeC
Q 008844 70 ITSVCWSKYGHRILVSAADKSLTLWDVLKG--------------EKITRIVLQQTPLQARLHPG----SSTPSLCLACPL 131 (551)
Q Consensus 70 V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~--------------~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~ 131 (551)
...+.|+|||..|++-+.|..+.+|++... .....+.....++..+|.+. .....++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456789999999999999999999987421 12233344455677777642 233568889999
Q ss_pred CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEEC-CCCcEE--
Q 008844 132 SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDH-KSNQIR-- 208 (551)
Q Consensus 132 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~-~~~~~~-- 208 (551)
+.-|.+||.-+|+............. -....+++|+|||.+|++|. +..|++||+ +.|...
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de---------------~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDE---------------YTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHh---------------hhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc
Confidence 99999999999987654333221110 01567999999999999876 568999999 555432
Q ss_pred -Eeee---ccCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee
Q 008844 209 -ALVP---VSGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF 283 (551)
Q Consensus 209 -~~~~---~~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (551)
.++. .+..+.|.+++|+|.. ..+++++....+-||. ..+...+..+
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~-----------------------------~~~~~pl~ll 246 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN-----------------------------DDGRRPLQLL 246 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEe-----------------------------cCCCCceeee
Confidence 2221 1236789999999965 5899999999888886 2346678888
Q ss_pred cccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEEEecCCC-ceEEEE--EecCCCeEEEEcCCC
Q 008844 284 REFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPKE-ALIDLA--WHPVHPIIVSVSLTG 358 (551)
Q Consensus 284 ~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~-~v~~l~--~sp~~~~l~s~s~dg 358 (551)
.+|.+.|+ .++|.++|+.|++|+.. +-.|..||++ +.++..|..|.+ .-..|. ..|++++|++|+.||
T Consensus 247 ggh~gGvT-----hL~~~edGn~lfsGaRk--~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 247 GGHGGGVT-----HLQWCEDGNKLFSGARK--DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred cccCCCee-----eEEeccCcCeecccccC--CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence 89999999 89999999999999874 6789999999 888989988876 333444 478899999999999
Q ss_pred cEEEEecCCCCcc
Q 008844 359 WVYIWAKDYTENW 371 (551)
Q Consensus 359 ~i~iW~~~~~~~~ 371 (551)
.|++||+....+|
T Consensus 320 ~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 320 SVRVWDLKDLGNE 332 (406)
T ss_pred cEEEEecCCCCCc
Confidence 9999999985554
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=6.5e-21 Score=181.58 Aligned_cols=259 Identities=17% Similarity=0.254 Sum_probs=194.2
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
+|++.|.+|+..|.|.+|++|+.||+|+||.+.+|.+++++.+...+.+++|+|.+... ++++.....+.|.+..-|.
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~--vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLC--VLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCce--eEEEEecCceEEeCccccc
Confidence 45999999999999999999999999999999999999999999999999999987653 4444444446666654442
Q ss_pred eee------eccccCCCCC---CCCC--------CCCCCCCCCCCCCCceEEEEeeCCCEEEEEec---CceEEEEECCC
Q 008844 145 TSI------LPIAVPDVAN---GIAP--------SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS---KGEILVIDHKS 204 (551)
Q Consensus 145 ~~~------~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~---dg~i~i~d~~~ 204 (551)
... .......... .... .....+....+...|..+.|+..|.||++... ...|.|+++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 111 0001100000 0000 01112233446668999999999999998765 35799999987
Q ss_pred CcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec
Q 008844 205 NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR 284 (551)
Q Consensus 205 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (551)
.....-+. ...+.|.++.|+|...+|++++ ...|||||+.. ...+..+.
T Consensus 556 ~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k-----------------------------qelvKkL~ 604 (733)
T KOG0650|consen 556 RKSQSPFR-KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK-----------------------------QELVKKLL 604 (733)
T ss_pred ccccCchh-hcCCceeEEEecCCCceEEEEe-ccceEEEehhH-----------------------------HHHHHHHh
Confidence 76655443 4567899999999999888885 47899999322 12222333
Q ss_pred ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEE
Q 008844 285 EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYI 362 (551)
Q Consensus 285 ~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~i 362 (551)
.....+. .++++|.|..|++|+. ++.+..||+. .++.+.+..|...+++|+||+.-+++++|+.||++.|
T Consensus 605 tg~kwiS-----~msihp~GDnli~gs~---d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 605 TGSKWIS-----SMSIHPNGDNLILGSY---DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred cCCeeee-----eeeecCCCCeEEEecC---CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 3333344 7899999999999999 9999999999 6789999999999999999999999999999999998
Q ss_pred Ee
Q 008844 363 WA 364 (551)
Q Consensus 363 W~ 364 (551)
+-
T Consensus 677 fh 678 (733)
T KOG0650|consen 677 FH 678 (733)
T ss_pred Ee
Confidence 75
No 147
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=1.2e-20 Score=174.65 Aligned_cols=237 Identities=14% Similarity=0.217 Sum_probs=167.5
Q ss_pred CccccccC--------CCCccceeecccccceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCce-----eeEeeccccc
Q 008844 2 NAPIIDPL--------QGDFPEVIEEYLEHGVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGI-----AKELRDKECV 67 (551)
Q Consensus 2 nl~lwd~~--------~~~~~~~l~~~~h~~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~-----~~~~~~~~h~ 67 (551)
++.|||.. .+++...+....|+..-+.|+|++... +|++|+.|++|++||+..... ......++|.
T Consensus 148 dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~ 227 (422)
T KOG0264|consen 148 DVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE 227 (422)
T ss_pred CEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC
Confidence 46677744 223334445555877678899998643 788999999999999974332 2222234569
Q ss_pred ccEEEEEecC-CCCEEEEEeCCCCEEEEEcCCC--eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 68 AAITSVCWSK-YGHRILVSAADKSLTLWDVLKG--EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 68 ~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
..|..++|++ ...++++++.|+.+.|||++++ ++....
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~--------------------------------------- 268 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV--------------------------------------- 268 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc---------------------------------------
Confidence 9999999999 4567889999999999999863 221111
Q ss_pred eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEE
Q 008844 145 TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNI 222 (551)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l 222 (551)
..|...+.|++|+|-+ .+||+|+.|++|.+||+++... +..+. .|...|.+|
T Consensus 269 -------------------------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V 322 (422)
T KOG0264|consen 269 -------------------------KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQV 322 (422)
T ss_pred -------------------------cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEE
Confidence 2233388999999876 6788899999999999998665 55554 899999999
Q ss_pred EEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 223 VFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 223 ~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
.|+|+. ..|++++.|+.+.|||+..-....... .........+..-.+|...|. .+.|+
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e---------------da~dgppEllF~HgGH~~kV~-----DfsWn 382 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE---------------DAEDGPPELLFIHGGHTAKVS-----DFSWN 382 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChh---------------hhccCCcceeEEecCcccccc-----cccCC
Confidence 999975 578899999999999932211110000 000111333556667888887 77889
Q ss_pred CCCCEEEEeeccCCcceEEEEecC
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
|+..++++...+ |+.+.||...
T Consensus 383 p~ePW~I~Svae--DN~LqIW~~s 404 (422)
T KOG0264|consen 383 PNEPWTIASVAE--DNILQIWQMA 404 (422)
T ss_pred CCCCeEEEEecC--CceEEEeecc
Confidence 988776555443 8999999876
No 148
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.5e-21 Score=163.37 Aligned_cols=220 Identities=18% Similarity=0.346 Sum_probs=167.5
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe---EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE---KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLS 141 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~ 141 (551)
.|...|..+...--|+.|+||+.|++|+|+.++.+. ++.++.+|..
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G------------------------------- 57 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG------------------------------- 57 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC-------------------------------
Confidence 357888887777779999999999999999997654 3445555443
Q ss_pred CCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee--CCCEEEEEecCceEEEEECCCCcEEEee-eccCccc
Q 008844 142 TGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK--YGDLVYVGNSKGEILVIDHKSNQIRALV-PVSGAAV 218 (551)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~~~~~ 218 (551)
++.-++|.. .|.+|++++.||.|.||.-.+++-.... ...|...
T Consensus 58 ---------------------------------PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~S 104 (299)
T KOG1332|consen 58 ---------------------------------PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSAS 104 (299)
T ss_pred ---------------------------------CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccc
Confidence 666677755 6899999999999999999888542221 1268899
Q ss_pred eEEEEEeeC--CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 219 IKNIVFSRN--GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 219 i~~l~~s~~--g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
|++++|.|. |-.|++++.||.|.|++.... .+.........|.-.++
T Consensus 105 VNsV~wapheygl~LacasSDG~vsvl~~~~~--------------------------g~w~t~ki~~aH~~Gvn----- 153 (299)
T KOG1332|consen 105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSS--------------------------GGWTTSKIVFAHEIGVN----- 153 (299)
T ss_pred ceeecccccccceEEEEeeCCCcEEEEEEcCC--------------------------CCccchhhhhccccccc-----
Confidence 999999997 567999999999999982111 01222344566777777
Q ss_pred eeEEcCC---C-----------CEEEEeeccCCcceEEEEecC-C--ceeEEEecCCCceEEEEEecCC----CeEEEEc
Q 008844 297 APCFSGD---G-----------EWVIAGSASKGEHKIYIWDRA-G--YLVKILEGPKEALIDLAWHPVH----PIIVSVS 355 (551)
Q Consensus 297 ~~~~s~d---g-----------~~l~~gs~~~~dg~I~iwd~~-~--~~~~~l~~h~~~v~~l~~sp~~----~~l~s~s 355 (551)
+++|.|. | +.|++|+. |..|+||... + .+-+.|.+|.+.|..++|.|.- .+||+|+
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGc---Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGC---DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCC---ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 7777774 4 56899998 9999999998 3 4556699999999999999975 3899999
Q ss_pred CCCcEEEEecCCC-Ccce--------------eecCCcceec
Q 008844 356 LTGWVYIWAKDYT-ENWS--------------AFAPDFKELE 382 (551)
Q Consensus 356 ~dg~i~iW~~~~~-~~~~--------------~~spd~~~l~ 382 (551)
.||+|.||..... +.|. .|++.|..|+
T Consensus 231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~La 272 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILA 272 (299)
T ss_pred CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEE
Confidence 9999999998743 3343 5666666665
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=1.6e-20 Score=164.15 Aligned_cols=215 Identities=17% Similarity=0.281 Sum_probs=168.6
Q ss_pred ccccEEEEEecC-CCCEEEEEeCCCCEEEEEcCCCeEEEE--EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 66 CVAAITSVCWSK-YGHRILVSAADKSLTLWDVLKGEKITR--IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 66 h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
|.+.|++|...+ .|+|+++|+.||.|.|||++....... +..... ++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~---------------c~--------------- 91 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK---------------CI--------------- 91 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehee---------------ee---------------
Confidence 478899999877 589999999999999999976431110 000000 00
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEE
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKN 221 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 221 (551)
..+.....|.+.|..+.|-|-. .++.+++.|.++++||..+.+....+ ...+.|++
T Consensus 92 ---------------------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYs 148 (397)
T KOG4283|consen 92 ---------------------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYS 148 (397)
T ss_pred ---------------------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeeh
Confidence 0122334577799999998865 67788899999999999999988887 56788899
Q ss_pred EEEeeCC---CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 222 IVFSRNG---QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 222 l~~s~~g---~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
-+++|-. -++|+|..+-.|++.| +..+.+-..+.+|.+.|. ++
T Consensus 149 hamSp~a~sHcLiA~gtr~~~VrLCD-----------------------------i~SGs~sH~LsGHr~~vl-----aV 194 (397)
T KOG4283|consen 149 HAMSPMAMSHCLIAAGTRDVQVRLCD-----------------------------IASGSFSHTLSGHRDGVL-----AV 194 (397)
T ss_pred hhcChhhhcceEEEEecCCCcEEEEe-----------------------------ccCCcceeeeccccCceE-----EE
Confidence 9998843 3678888899999999 334778889999999998 88
Q ss_pred EEcCCCCEE-EEeeccCCcceEEEEecC--CceeEEEe--------------cCCCceEEEEEecCCCeEEEEcCCCcEE
Q 008844 299 CFSGDGEWV-IAGSASKGEHKIYIWDRA--GYLVKILE--------------GPKEALIDLAWHPVHPIIVSVSLTGWVY 361 (551)
Q Consensus 299 ~~s~dg~~l-~~gs~~~~dg~I~iwd~~--~~~~~~l~--------------~h~~~v~~l~~sp~~~~l~s~s~dg~i~ 361 (551)
.|||...|+ ++|+. ||.|++||++ ..+...+. .|.+.|..++|..++.++++++.|..++
T Consensus 195 ~Wsp~~e~vLatgsa---Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSA---DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EeccCceeEEEecCC---CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 999988875 67777 9999999998 34444443 3557799999999999999999999999
Q ss_pred EEecCCCCc
Q 008844 362 IWAKDYTEN 370 (551)
Q Consensus 362 iW~~~~~~~ 370 (551)
+|+...+++
T Consensus 272 ~wn~~~G~n 280 (397)
T KOG4283|consen 272 VWNMESGRN 280 (397)
T ss_pred EeecccCcc
Confidence 999998764
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=172.86 Aligned_cols=242 Identities=16% Similarity=0.264 Sum_probs=179.4
Q ss_pred EEEEEEcC-------CCCEEEEEeCCCeEEEEeccCCce-------------------eeEeecccccccEEEEEecCC-
Q 008844 26 MKCIAFNR-------RGTLLAAGCSDGSCVIWDFETRGI-------------------AKELRDKECVAAITSVCWSKY- 78 (551)
Q Consensus 26 V~~l~fs~-------dg~~latg~~dg~I~iwd~~~~~~-------------------~~~~~~~~h~~~V~~l~~s~~- 78 (551)
..|++|.. -|+|+|.|+.|..|.|||+.-... .+.....+|+..|.+|+|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35777743 368999999999999999852110 011223357899999999875
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCC
Q 008844 79 GHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
.+.|++||.|.+|++||+.+|++...+..+..
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k------------------------------------------------ 287 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGK------------------------------------------------ 287 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCC------------------------------------------------
Confidence 46789999999999999999999888875443
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEEEEeeCCC-EEEEee
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRNGQ-YLLTNS 235 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~g~-~l~t~s 235 (551)
.|.++.|+|.. .+|++|+.|++|.+.|.+.... -..+ ...+.|-.++|.|... .+++++
T Consensus 288 ----------------~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 288 ----------------KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred ----------------ceeEEEecCCCceEEEeccccceEEeeeccCccccCceE--EeccceEEEEecCCCceeEEEec
Confidence 56666666654 6889999999999999985322 2222 3467899999999764 567778
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC-CCEEEEeeccC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD-GEWVIAGSASK 314 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d-g~~l~~gs~~~ 314 (551)
.||+|+-+|++.+ ++++..+..|.+.|. ++++++. -.+|++++.
T Consensus 350 ddG~v~~~D~R~~----------------------------~~~vwt~~AHd~~IS-----gl~~n~~~p~~l~t~s~-- 394 (463)
T KOG0270|consen 350 DDGTVYYFDIRNP----------------------------GKPVWTLKAHDDEIS-----GLSVNIQTPGLLSTAST-- 394 (463)
T ss_pred CCceEEeeecCCC----------------------------CCceeEEEeccCCcc-----eEEecCCCCcceeeccc--
Confidence 8999999994443 477889999999998 7787764 456778887
Q ss_pred CcceEEEEecCCceeEEEecCC---CceEEEEEecCCC-eEEEEcCCCcEEEEecCCCC
Q 008844 315 GEHKIYIWDRAGYLVKILEGPK---EALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 315 ~dg~I~iwd~~~~~~~~l~~h~---~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~~ 369 (551)
++.|.+|++.+..-+....|. +...|+++.|+-. +||.||..+.++|||+.+..
T Consensus 395 -d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 395 -DKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred -cceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 999999999832222233333 3466778888876 56777778889999997653
No 151
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=161.93 Aligned_cols=292 Identities=13% Similarity=0.142 Sum_probs=195.7
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
.|++.|+|+.|-.+++ |.+|..-|.|.+|++.+.+.+..++++ |...|+.+.-.|+ ..|.+-+.|..+.+|++.-+.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~-g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLF-GRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhh-ccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence 5889999999988776 888999999999999999988888865 4889999999987 568899999999999997655
Q ss_pred EEEEEE--cCCC-eeEEEEecCCCCCcEEEEeeCCCC--cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 101 KITRIV--LQQT-PLQARLHPGSSTPSLCLACPLSSA--PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 101 ~~~~~~--~~~~-~~~~~~~p~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.+..-. ...- .....+++.++....++.....+. +.+-|........+.-. .. ......
T Consensus 89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd----------~~------~~Klgs 152 (323)
T KOG0322|consen 89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD----------SE------RSKLGS 152 (323)
T ss_pred eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc----------hh------ccccCc
Confidence 433222 1110 111122233222211111111111 11122211111111100 00 011114
Q ss_pred ceEEEEee-CC--CEEEEEecCceEEEEECCCCcEEEeee---------ccCccceEEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 176 PTAACFNK-YG--DLVYVGNSKGEILVIDHKSNQIRALVP---------VSGAAVIKNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 176 i~~~~~s~-~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~---------~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
+.|..+.. ++ -++++|..+|.+.+||+.++..+..++ ..|..+|.++.|.+.-..=++|+.+..+..|
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence 55555432 23 356788899999999999984433332 1578899999998766566778888888888
Q ss_pred eCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEE
Q 008844 244 DNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
.+... .. .-.+..... ....+. .+.+-||++.+|+++. ||.|+||
T Consensus 233 Sl~~s-~g-------------------------slq~~~e~~lknpGv~-----gvrIRpD~KIlATAGW---D~RiRVy 278 (323)
T KOG0322|consen 233 SLNHS-TG-------------------------SLQIRKEITLKNPGVS-----GVRIRPDGKILATAGW---DHRIRVY 278 (323)
T ss_pred eeccc-cC-------------------------cccccceEEecCCCcc-----ceEEccCCcEEeeccc---CCcEEEE
Confidence 82211 00 000111111 112233 6788899999999999 9999999
Q ss_pred ecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 323 DRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 323 d~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
+.+ ..++..|+-|.+.|++++|+|+.+++|++|.|++|.+|++
T Consensus 279 swrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 279 SWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999 9999999999999999999999999999999999999986
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.2e-19 Score=165.48 Aligned_cols=293 Identities=15% Similarity=0.205 Sum_probs=183.4
Q ss_pred ccceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCc---------eeeEeecccccccEEEEEecCCCCEEEEEeCCCCE
Q 008844 22 EHGVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRG---------IAKELRDKECVAAITSVCWSKYGHRILVSAADKSL 91 (551)
Q Consensus 22 h~~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~---------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i 91 (551)
.+.+|..+.|.++.. .||||+.|..|+||-+..+. .+..+. .|...|+++.|+|+|.+|++|+.+|.|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls--~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS--RHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc--CCcceeEEEEEcCCcCeeeecCCCceE
Confidence 347899999999876 99999999999999886432 122343 358999999999999999999999999
Q ss_pred EEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 92 TLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
.+|-... ..+. .... .....+. ..+ + +.....
T Consensus 90 ~lWk~~~-~~~~----~~d~-e~~~~ke----~w~----------v----------------------------~k~lr~ 121 (434)
T KOG1009|consen 90 FLWKQGD-VRIF----DADT-EADLNKE----KWV----------V----------------------------KKVLRG 121 (434)
T ss_pred EEEEecC-cCCc----cccc-hhhhCcc----ceE----------E----------------------------EEEecc
Confidence 9997643 1000 0000 0000000 000 0 001112
Q ss_pred CCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccc
Q 008844 172 PPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 172 ~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~ 251 (551)
|...|..++|+|++.++++|+.|..+++||+..|.....+. .|...+..++|.|-++++++-+.|+..+++........
T Consensus 122 h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 122 HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-ccccccceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence 33388999999999999999999999999999999988886 89999999999999999999999986666652111000
Q ss_pred cchh------------------------hhhh-hccCCCCCcceeeeecc------ce---eeeeeccc--ccccceee-
Q 008844 252 GLEA------------------------LVDI-EKGIAEPNGIEKMKMVG------SK---CLALFREF--QDSITKMH- 294 (551)
Q Consensus 252 ~~~~------------------------~~~~-~~~~~~~~~~~~~~~~~------~~---~~~~~~~~--~~~v~~~~- 294 (551)
.... +..+ .....++++...+...+ .. +...+... ..++..++
T Consensus 201 ~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~ 280 (434)
T KOG1009|consen 201 KRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS 280 (434)
T ss_pred eeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC
Confidence 0000 0000 00011111111111110 00 00011100 00000000
Q ss_pred ----eeeeEEc------------------CCCCEEEEeeccCCcceEEEEecC-CceeEEEe-cCCCceEEEEEecCCCe
Q 008844 295 ----WKAPCFS------------------GDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE-GPKEALIDLAWHPVHPI 350 (551)
Q Consensus 295 ----~~~~~~s------------------~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~-~h~~~v~~l~~sp~~~~ 350 (551)
.-.+.|+ |-+-.+|.++. ..|+|||.+ -.++..+. -|-..|++++|+++|.+
T Consensus 281 ~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~----~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~ 356 (434)
T KOG1009|consen 281 PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK----NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSV 356 (434)
T ss_pred CCcceEEEEeeeeEEEeccccccccccccccceEEEEeec----ceEEEeccccccceEEEeeeeeeeecceeecCCCcE
Confidence 0012222 22334555554 679999988 55555443 47889999999999999
Q ss_pred EEEEcCCCcEEEEecCCCC
Q 008844 351 IVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 351 l~s~s~dg~i~iW~~~~~~ 369 (551)
|+..|.||.+.+-.++..+
T Consensus 357 l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 357 LLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEeccCCceEEEEEcchh
Confidence 9999999998887776543
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=3.2e-19 Score=161.20 Aligned_cols=245 Identities=18% Similarity=0.271 Sum_probs=176.9
Q ss_pred cccccceEEEEEEcCCCC--EEEEEeCCCeEEEEeccC----------------CceeeEeecccccccEEEEEecCCC-
Q 008844 19 EYLEHGVMKCIAFNRRGT--LLAAGCSDGSCVIWDFET----------------RGIAKELRDKECVAAITSVCWSKYG- 79 (551)
Q Consensus 19 ~~~h~~~V~~l~fs~dg~--~latg~~dg~I~iwd~~~----------------~~~~~~~~~~~h~~~V~~l~~s~~g- 79 (551)
...|.+.|+.+.-++-|+ +.|+=+..|.|.||++.. .+.+.++.+| ...=++|+|||-.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~gh--k~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGH--KGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEeccc--Cccceeeecccccc
Confidence 345778888888887654 555556789999999853 2344455544 7888899999832
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 80 HRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
..|++|..-+.|++|...+|.....-
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~------------------------------------------------------ 250 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQ------------------------------------------------------ 250 (440)
T ss_pred cccccCccccceEeeeeccCceeecC------------------------------------------------------
Confidence 24778877788999987776432110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
.....|...|-.++|+|.. ..|++|+.||+|+|||++++.. -..+...|.+.|+.|.|+..-.+||+|+.|
T Consensus 251 -------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 251 -------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred -------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 0111244478889999976 6889999999999999999833 222223899999999999988899999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC-CCEEEEeeccCCc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD-GEWVIAGSASKGE 316 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d-g~~l~~gs~~~~d 316 (551)
|+++|||++. ...+..+..++-|..+|+ ++.|+|. ...|++++. |
T Consensus 324 Gt~~iwDLR~--------------------------~~~~~pVA~fk~Hk~pIt-----sieW~p~e~s~iaasg~---D 369 (440)
T KOG0302|consen 324 GTLSIWDLRQ--------------------------FKSGQPVATFKYHKAPIT-----SIEWHPHEDSVIAASGE---D 369 (440)
T ss_pred ceEEEEEhhh--------------------------ccCCCcceeEEeccCCee-----EEEeccccCceEEeccC---C
Confidence 9999999332 112466888999999999 8899984 456666666 8
Q ss_pred ceEEEEecC--Cc---------------eeEEEecCC--CceEEEEEecCCC-eEEEEcCCCcE
Q 008844 317 HKIYIWDRA--GY---------------LVKILEGPK--EALIDLAWHPVHP-IIVSVSLTGWV 360 (551)
Q Consensus 317 g~I~iwd~~--~~---------------~~~~l~~h~--~~v~~l~~sp~~~-~l~s~s~dg~i 360 (551)
..|.|||+. .. +.+.|-.|. ..|..|.||+.-+ +|++.+.||.-
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 999999986 11 111233343 4688999999877 88888888853
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.5e-20 Score=192.39 Aligned_cols=247 Identities=17% Similarity=0.326 Sum_probs=191.5
Q ss_pred cceEEEEEEcCCCCE----EEEEeCCCeEEEEeccC---C---ceeeEeecccccccEEEEEecCCC-CEEEEEeCCCCE
Q 008844 23 HGVMKCIAFNRRGTL----LAAGCSDGSCVIWDFET---R---GIAKELRDKECVAAITSVCWSKYG-HRILVSAADKSL 91 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~----latg~~dg~I~iwd~~~---~---~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i 91 (551)
...-+.|+|.+.|.. ||.|..||.|.+||... + ..+.++. .|.+.|..|.|++.. ++|++|+.||.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~--~h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS--KHTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc--ccCCceeeeeccccCCceeeccCCCCcE
Confidence 356789999998775 89999999999999865 2 2333443 469999999999964 599999999999
Q ss_pred EEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 92 TLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
.|||+.+-+.-.... ...
T Consensus 142 ~iWDlnn~~tP~~~~--------------------------------------------------------------~~~ 159 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPG--------------------------------------------------------------SQA 159 (1049)
T ss_pred EEeccCCcCCCCCCC--------------------------------------------------------------CCC
Confidence 999997633111000 001
Q ss_pred CCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccC-ccceEEEEEeeCCC-EEEEeeCC---CeEEEEeC
Q 008844 172 PPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSG-AAVIKNIVFSRNGQ-YLLTNSND---RTIRIYDN 245 (551)
Q Consensus 172 ~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~s~~g~-~l~t~s~D---g~i~iwd~ 245 (551)
....|.+++|+..- +.|++++.+|.+.|||++..+.+..+.... ...+..++|+|+.. .|++++.| -.|.+||+
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence 12278999998765 677888999999999999987766654222 24578999999864 56666654 35999994
Q ss_pred cCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC-CEEEEeeccCCcceEEEEec
Q 008844 246 LLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG-EWVIAGSASKGEHKIYIWDR 324 (551)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg-~~l~~gs~~~~dg~I~iwd~ 324 (551)
+.. ...++.+.+|+..|. ++.|++.+ ++|++++. |+.|.+|+.
T Consensus 240 R~a----------------------------ssP~k~~~~H~~Gil-----slsWc~~D~~lllSsgk---D~~ii~wN~ 283 (1049)
T KOG0307|consen 240 RFA----------------------------SSPLKILEGHQRGIL-----SLSWCPQDPRLLLSSGK---DNRIICWNP 283 (1049)
T ss_pred ccc----------------------------CCchhhhccccccee-----eeccCCCCchhhhcccC---CCCeeEecC
Confidence 432 344677889999998 77888855 88888888 999999999
Q ss_pred C-CceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCCC
Q 008844 325 A-GYLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 325 ~-~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~~ 369 (551)
+ |+.+..+.....++..+.|+|..+ .+++++.||.|.|+.+.+..
T Consensus 284 ~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9 999999998889999999999998 77777889999999997654
No 155
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1e-17 Score=163.74 Aligned_cols=278 Identities=11% Similarity=0.162 Sum_probs=176.9
Q ss_pred EEeCCCeEEEEeccCC-c--eeeEeecccccccEEEEEecCCCCEEEEEeC-CCCEEEEEcC-CCeE--EEEEEcCCCee
Q 008844 40 AGCSDGSCVIWDFETR-G--IAKELRDKECVAAITSVCWSKYGHRILVSAA-DKSLTLWDVL-KGEK--ITRIVLQQTPL 112 (551)
Q Consensus 40 tg~~dg~I~iwd~~~~-~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~vwd~~-~~~~--~~~~~~~~~~~ 112 (551)
+...++.|.+|++.+. . .+..+. +......++++|++++|++++. ++.|.+|++. ++.. +........+.
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 3466899999999743 3 334443 2456778999999999877654 8899999996 3432 23333444567
Q ss_pred EEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe
Q 008844 113 QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN 192 (551)
Q Consensus 113 ~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~ 192 (551)
.+.++|+++ .++++...++.+.+|++............. .....+.+++++|+|+++++++
T Consensus 84 ~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-----------------~~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 84 HISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQII-----------------EGLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred EEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeec-----------------cCCCcccEeEeCCCCCEEEEee
Confidence 888998764 355555568899999996432111000000 0011466788999999887655
Q ss_pred -cCceEEEEECCCCcEEE-----eeeccCccceEEEEEeeCCCEEEEeeC-CCeEEEEeCcCCccccchhhhhhhccCCC
Q 008844 193 -SKGEILVIDHKSNQIRA-----LVPVSGAAVIKNIVFSRNGQYLLTNSN-DRTIRIYDNLLPLKNGLEALVDIEKGIAE 265 (551)
Q Consensus 193 -~dg~i~i~d~~~~~~~~-----~~~~~~~~~i~~l~~s~~g~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (551)
.++.|.+||+.+...+. ............++|+|+|++|+++.. ++.|.+|++. +..+..
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~-~~~~~~------------ 211 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK-DPHGEI------------ 211 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe-CCCCCE------------
Confidence 56999999998743221 111122345678999999999988776 8999999932 110000
Q ss_pred CCcceeeeeccceeeeeecccccccceeee-eeeEEcCCCCEEEEeeccCCcceEEEEecC--Cce---eEEEecCCCce
Q 008844 266 PNGIEKMKMVGSKCLALFREFQDSITKMHW-KAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYL---VKILEGPKEAL 339 (551)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~---~~~l~~h~~~v 339 (551)
..+..+..+........| ..+.|+|+|++|+++... ++.|.+|++. +.. +..+.. ....
T Consensus 212 ------------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~-~~~p 276 (330)
T PRK11028 212 ------------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPT-ETQP 276 (330)
T ss_pred ------------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEec-cccC
Confidence 011111111100000001 157899999999998542 6899999996 322 222222 1245
Q ss_pred EEEEEecCCCeEEEEcC-CCcEEEEecCC
Q 008844 340 IDLAWHPVHPIIVSVSL-TGWVYIWAKDY 367 (551)
Q Consensus 340 ~~l~~sp~~~~l~s~s~-dg~i~iW~~~~ 367 (551)
..++|+|++++|++++. +++|.+|+++.
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 68999999999998776 89999998863
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=5.5e-19 Score=169.46 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=114.1
Q ss_pred ecCceEEEEECCCCcE-----EEeeeccCccceEEEEEee-CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCC
Q 008844 192 NSKGEILVIDHKSNQI-----RALVPVSGAAVIKNIVFSR-NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAE 265 (551)
Q Consensus 192 ~~dg~i~i~d~~~~~~-----~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (551)
+..|.|-||+++..-. +..+ .....|+.+.|.| |...|++++.||.|+||.+.... ..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g--l~------------ 663 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG--LP------------ 663 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccccc--ccCceeeecccCCCChHHeeecccCceEEEEEeccCC--CC------------
Confidence 4567888888875322 2222 4567899999999 66789999999999999832111 00
Q ss_pred CCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEE
Q 008844 266 PNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLA 343 (551)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~ 343 (551)
......-..+..|...|+ .+.|+| -...|+++++ |-+|++||+. ++....|.+|++.|..++
T Consensus 664 --------e~~~tPe~~lt~h~eKI~-----slRfHPLAadvLa~asy---d~Ti~lWDl~~~~~~~~l~gHtdqIf~~A 727 (1012)
T KOG1445|consen 664 --------ENEMTPEKILTIHGEKIT-----SLRFHPLAADVLAVASY---DSTIELWDLANAKLYSRLVGHTDQIFGIA 727 (1012)
T ss_pred --------cccCCcceeeecccceEE-----EEEecchhhhHhhhhhc---cceeeeeehhhhhhhheeccCcCceeEEE
Confidence 001222345667777777 778888 4578899999 9999999999 888999999999999999
Q ss_pred EecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 344 WHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 344 ~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
|+|+|+.+|+.+.||+|+||+....+
T Consensus 728 WSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 728 WSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ECCCCcceeeeecCceEEEeCCCCCC
Confidence 99999999999999999999998765
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=5.2e-19 Score=165.08 Aligned_cols=264 Identities=14% Similarity=0.188 Sum_probs=191.5
Q ss_pred CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe--CCCCEEEEEcCCCe--EEEEE--EcCCCeeEEEEe
Q 008844 44 DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA--ADKSLTLWDVLKGE--KITRI--VLQQTPLQARLH 117 (551)
Q Consensus 44 dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~--~~~~~--~~~~~~~~~~~~ 117 (551)
...++|||+........+..+.....+.+++|+.... |++++ .|..|++|.- .|+ .+..+ .......++...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecc-cCCCCccceeeccccchHHHHhhh
Confidence 3479999998766555554443345699999997654 55544 4888999963 333 01111 111122222222
Q ss_pred cCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceE
Q 008844 118 PGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEI 197 (551)
Q Consensus 118 p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i 197 (551)
. ...++++++..+.+.|||++...+... ...|...|+++.|+....|||+++..|.|
T Consensus 89 s---~S~y~~sgG~~~~Vkiwdl~~kl~hr~--------------------lkdh~stvt~v~YN~~DeyiAsvs~gGdi 145 (673)
T KOG4378|consen 89 S---QSLYEISGGQSGCVKIWDLRAKLIHRF--------------------LKDHQSTVTYVDYNNTDEYIASVSDGGDI 145 (673)
T ss_pred h---cceeeeccCcCceeeehhhHHHHHhhh--------------------ccCCcceeEEEEecCCcceeEEeccCCcE
Confidence 2 235889999999999999995544322 23344589999999999999999999999
Q ss_pred EEEECCCCcEEEeeeccCccceEEEEEeeCCCE-EEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeecc
Q 008844 198 LVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQY-LLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVG 276 (551)
Q Consensus 198 ~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~-l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (551)
.|..+.++.....+.......|+-+.|+|..++ |.+++.+|.|.+||+...
T Consensus 146 iih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~---------------------------- 197 (673)
T KOG4378|consen 146 IIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM---------------------------- 197 (673)
T ss_pred EEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC----------------------------
Confidence 999999998888886555677889999998775 557788999999993211
Q ss_pred ceeeeeecccccccceeeeeeeEEcCCC-CEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEE
Q 008844 277 SKCLALFREFQDSITKMHWKAPCFSGDG-EWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSV 354 (551)
Q Consensus 277 ~~~~~~~~~~~~~v~~~~~~~~~~s~dg-~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~ 354 (551)
.........|..+.. .+||+|.. .+|++.+. |..|++||+. ......|. ...+...++|.++|.+|+.|
T Consensus 198 sp~~~~~~~HsAP~~-----gicfspsne~l~vsVG~---Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 198 SPIFHASEAHSAPCR-----GICFSPSNEALLVSVGY---DKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred CcccchhhhccCCcC-----cceecCCccceEEEecc---cceEEEeecccccccceee-ecCCcceeeecCCceEEEee
Confidence 122333445666655 88999955 56677777 9999999999 55555554 35789999999999999999
Q ss_pred cCCCcEEEEecCCCC
Q 008844 355 SLTGWVYIWAKDYTE 369 (551)
Q Consensus 355 s~dg~i~iW~~~~~~ 369 (551)
...|.|+.||+...+
T Consensus 269 ~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTK 283 (673)
T ss_pred cCCceEEEEecccCC
Confidence 999999999998765
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=7.7e-19 Score=156.07 Aligned_cols=302 Identities=15% Similarity=0.195 Sum_probs=215.1
Q ss_pred ccceEEEEEEcC-----CCCEEEEEeCCCeEEEEeccCC---ceeeEeecccccccEEEEEecCC----CCEEEEEeCCC
Q 008844 22 EHGVMKCIAFNR-----RGTLLAAGCSDGSCVIWDFETR---GIAKELRDKECVAAITSVCWSKY----GHRILVSAADK 89 (551)
Q Consensus 22 h~~~V~~l~fs~-----dg~~latg~~dg~I~iwd~~~~---~~~~~~~~~~h~~~V~~l~~s~~----g~~l~s~s~dg 89 (551)
|..+|..++|++ .-..+|+++. ..+.||..... ..++.+....|......++|+-+ ..+|+.++.-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG 115 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence 557899999985 2346777664 57889987643 34455544456788888999754 45889999999
Q ss_pred CEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCC
Q 008844 90 SLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
.|+|.|+.++++...+.+|.. +..+.++|.. +.++++++.|..+++|++++..+..+.-..
T Consensus 116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~--~qlvls~SkD~svRlwnI~~~~Cv~VfGG~---------------- 177 (385)
T KOG1034|consen 116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR--PQLVLSASKDHSVRLWNIQTDVCVAVFGGV---------------- 177 (385)
T ss_pred EEEEEecchhhhccceeccCccchhhhcCCCC--CcEEEEecCCceEEEEeccCCeEEEEeccc----------------
Confidence 999999999999999988864 7789999964 669999999999999999999988764333
Q ss_pred CCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEe----------------------e-----eccCccceEE
Q 008844 169 DGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRAL----------------------V-----PVSGAAVIKN 221 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~----------------------~-----~~~~~~~i~~ 221 (551)
..|...|.++.|+.+|.+|++++.|.+|++|++...+.... + ..-|...|.|
T Consensus 178 -egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 178 -EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred -ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 34555999999999999999999999999999984321110 0 1135556666
Q ss_pred EEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 222 IVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 222 l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
+.|- |.++++-+-++.|..|..- ... +.+..... +.. ....+..+.-....+. +-..+|.
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pg-kl~---e~~~~vkp----~es-------~~Ti~~~~~~~~c~iW---firf~~d 316 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPG-KLE---ESIHNVKP----PES-------ATTILGEFDYPMCDIW---FIRFAFD 316 (385)
T ss_pred HHHH--hhheeecccCceEEEEecc-hhh---hhhhccCC----Ccc-------ceeeeeEeccCccceE---EEEEeec
Confidence 6664 5789999999999999810 000 00000000 000 0011112222222222 2256788
Q ss_pred CCCCEEEEeeccCCcceEEEEecC-Cce--eEEEecC--CCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA-GYL--VKILEGP--KEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~-~~~--~~~l~~h--~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
|-+++||.|.+ .|.|++||+. ..+ ..++..+ ...|...+|+.++.+|+....|++|.-||.-
T Consensus 317 ~~~~~la~gnq---~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 317 PWQKMLALGNQ---SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHHHhhccC---CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 89999999999 8999999999 333 2233322 3569999999999999999999999999853
No 159
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=1.6e-18 Score=173.06 Aligned_cols=276 Identities=18% Similarity=0.214 Sum_probs=191.4
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCce--ee--EeecccccccEEEEEec
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRGI--AK--ELRDKECVAAITSVCWS 76 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~~--~~--~~~~~~h~~~V~~l~~s 76 (551)
.+.||+......|+.... -...|+|++|+| +..+||.|+.+|.|.+||+..+.. .. .+..+.|..+|+.+.|.
T Consensus 223 ~~~vW~~~~p~~Pe~~~~--~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLE--SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred eEEEEecCCCCCceEEEe--cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 467898887766665543 457899999999 567889999999999999987654 22 23345689999999997
Q ss_pred CCCC--EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCC
Q 008844 77 KYGH--RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 77 ~~g~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
.+.. -+++++.||.|..|+++.-..-......... .+
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~----~~------------------------------------- 339 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK----KH------------------------------------- 339 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccc----cc-------------------------------------
Confidence 7544 4999999999999976543211100000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEE-------EeeeccCccceEEEEEee
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIR-------ALVPVSGAAVIKNIVFSR 226 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~-------~~~~~~~~~~i~~l~~s~ 226 (551)
+.........++++.|.+.. ..+++|+..|.|.--.....+.- ......|.++|+++.++|
T Consensus 340 -----------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 340 -----------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNP 408 (555)
T ss_pred -----------cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCC
Confidence 00000111167888887766 67999999999987444332221 111226889999999999
Q ss_pred CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCC-
Q 008844 227 NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGE- 305 (551)
Q Consensus 227 ~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~- 305 (551)
=+..++..+.|-+++||.-. . ....+..+..+.+.++ +++|||..-
T Consensus 409 F~~k~fls~gDW~vriWs~~-~---------------------------~~~Pl~~~~~~~~~v~-----~vaWSptrpa 455 (555)
T KOG1587|consen 409 FYPKNFLSVGDWTVRIWSED-V---------------------------IASPLLSLDSSPDYVT-----DVAWSPTRPA 455 (555)
T ss_pred CccceeeeeccceeEecccc-C---------------------------CCCcchhhhhccceee-----eeEEcCcCce
Confidence 87766555569999999811 0 1223444444555565 889999664
Q ss_pred EEEEeeccCCcceEEEEecC---CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 306 WVIAGSASKGEHKIYIWDRA---GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 306 ~l~~gs~~~~dg~I~iwd~~---~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.++++.. +|.|.|||+. ..++.....+....+.+.|++.++.|++|...|++++|++..
T Consensus 456 vF~~~d~---~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 456 VFATVDG---DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEEcC---CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 5556665 8999999998 456666665667778899999999999999999999999964
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=9.1e-19 Score=168.38 Aligned_cols=294 Identities=15% Similarity=0.153 Sum_probs=191.4
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC-CCEEEEEeCCCCEEEEEcCC
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY-GHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~vwd~~~ 98 (551)
..|.+.|..+.|-|....|++++.|.+|++||+.+.++...-...+|...|.+++|.|. ...|++|+.||.|.|||++-
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 34889999999999777899999999999999999988877333355999999999995 46788999999999999863
Q ss_pred CeE---------------------------EEEEEcC-CCeeE---EEEecCCCCCcEEEEeeC-CCCcEEEEcCCCcee
Q 008844 99 GEK---------------------------ITRIVLQ-QTPLQ---ARLHPGSSTPSLCLACPL-SSAPMIVDLSTGSTS 146 (551)
Q Consensus 99 ~~~---------------------------~~~~~~~-~~~~~---~~~~p~~~~~~~~~~~~~-~~~i~i~d~~~~~~~ 146 (551)
... +.....+ ..+.+ +.+..+. ..+++++. |+.|++||++.....
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe---~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE---STLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc---ceeeeccCCCcceEEEeecccccc
Confidence 320 0000011 11222 3333332 24555554 999999999987654
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE--EEeeeccC--ccceEEE
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI--RALVPVSG--AAVIKNI 222 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~--~~~i~~l 222 (551)
.......... ..........+++++....|.+|++.+.|+.|++|++.+... +..+. ++ ......-
T Consensus 254 ~r~ep~~~~~---------~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks 323 (720)
T KOG0321|consen 254 YRQEPRGSDK---------YPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKS 323 (720)
T ss_pred cccCCCcccC---------ccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-Ccccceeeeee
Confidence 3211111000 000112234788999999999999999999999999987654 22221 11 1111223
Q ss_pred EEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC
Q 008844 223 VFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG 302 (551)
Q Consensus 223 ~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~ 302 (551)
..+|++.+|++|+.|....+|.+..+ ......+.+|...|+ +++|.|
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~----------------------------e~~~~~l~Ght~eVt-----~V~w~p 370 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSP----------------------------EAPPALLLGHTREVT-----TVRWLP 370 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCc----------------------------cCChhhhhCcceEEE-----EEeecc
Confidence 46799999999999999999984333 233556777888887 556655
Q ss_pred --CCCEEEEeeccCCcceEEEEecC-C-c-------------eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 303 --DGEWVIAGSASKGEHKIYIWDRA-G-Y-------------LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 303 --dg~~l~~gs~~~~dg~I~iwd~~-~-~-------------~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
.+. +++++. |..++||++. + + ....+.+|.-.+..+.|+-.+.+.... -+.+++|..
T Consensus 371 S~~t~-v~TcSd---D~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ss 444 (720)
T KOG0321|consen 371 SATTP-VATCSD---DFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSS 444 (720)
T ss_pred ccCCC-ceeecc---CcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccC
Confidence 444 445577 8999999987 2 1 222345555555555554444333322 334555543
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.6e-19 Score=156.67 Aligned_cols=284 Identities=16% Similarity=0.182 Sum_probs=186.2
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC--CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCe--
Q 008844 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK--YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTP-- 111 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-- 111 (551)
+.+|++...|.|++||..+++.+..+.++ ...++.+.|.. ..+.+++|+.||+|++||++.......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~--~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP--PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC--CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 57999999999999999999999999877 88888999976 4678999999999999999987766655443322
Q ss_pred eEEEEecCCCCCcEEEEee----CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-C
Q 008844 112 LQARLHPGSSTPSLCLACP----LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-D 186 (551)
Q Consensus 112 ~~~~~~p~~~~~~~~~~~~----~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~ 186 (551)
...+|.-+- +..++.++. .+-.+.+||++..+...-. ....|...|++++|+|.. +
T Consensus 119 ~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------------------~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 119 PFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------------------LNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred cceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhh------------------hhhhccCcceeEEecCCCCC
Confidence 222332211 122333332 3456889999987763211 122344589999999987 8
Q ss_pred EEEEEecCceEEEEECCCCcE----EEeeeccCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhc
Q 008844 187 LVYVGNSKGEILVIDHKSNQI----RALVPVSGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEK 261 (551)
Q Consensus 187 ~l~~g~~dg~i~i~d~~~~~~----~~~~~~~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (551)
+|++|+.||-|.|||+..... +..+ .+...|..+.|..++ +.|.+-+...+..+|++...... ..+..
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~-----~~~~~ 252 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE-----TWLEN 252 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh-----hcccC
Confidence 999999999999999986532 3344 567889999999877 35888888999999993221100 00000
Q ss_pred cCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEec-C----CceeEEEec-
Q 008844 262 GIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDR-A----GYLVKILEG- 334 (551)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~-~----~~~~~~l~~- 334 (551)
+. +... ..+........|. +.+| ++...+.+..+.+.+.+....- . ...+..+.+
T Consensus 253 ~~--------~~~~---d~r~~~~~dY~I~-------~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~ 314 (376)
T KOG1188|consen 253 PD--------VSAD---DLRKEDNCDYVIN-------EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG 314 (376)
T ss_pred cc--------chhh---hHHhhhhhhheee-------cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC
Confidence 00 0000 0000000000111 2233 3334433333211444544442 2 455667776
Q ss_pred CCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 335 PKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 335 h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
|..-|.++.|...+.++.|||.||.+.+|..
T Consensus 315 ~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 315 HEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 6677899999988999999999999999996
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.3e-18 Score=151.88 Aligned_cols=248 Identities=18% Similarity=0.296 Sum_probs=182.6
Q ss_pred ccceEEEEEEcCC-CCEEEEEeCC-------CeEEEEeccCC---------ceeeEeecccccccEEEEEecCCCCEEEE
Q 008844 22 EHGVMKCIAFNRR-GTLLAAGCSD-------GSCVIWDFETR---------GIAKELRDKECVAAITSVCWSKYGHRILV 84 (551)
Q Consensus 22 h~~~V~~l~fs~d-g~~latg~~d-------g~I~iwd~~~~---------~~~~~~~~~~h~~~V~~l~~s~~g~~l~s 84 (551)
|.+.|..|+-+|- .++|+|+..+ ..+.||.+... +++..+.. .+-+.|.|+.|.|++..|++
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcCCCCeeEE
Confidence 4489999999995 4566665442 24789987532 23334432 23468999999999999988
Q ss_pred EeCCCCEEEEEcCCCeEE-EEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCC
Q 008844 85 SAADKSLTLWDVLKGEKI-TRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSS 163 (551)
Q Consensus 85 ~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 163 (551)
-. |..|.+|++..+..+ ..+.....
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s----------------------------------------------------- 166 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSES----------------------------------------------------- 166 (370)
T ss_pred ec-cCceEEEEcccCcchheeeccccc-----------------------------------------------------
Confidence 76 889999999877652 22221110
Q ss_pred CCCCCCCCCCCCceEEEEee--CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCC-EEEEeeCCCeE
Q 008844 164 RNKYSDGTPPFTPTAACFNK--YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQ-YLLTNSNDRTI 240 (551)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~s~--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~t~s~Dg~i 240 (551)
..+....++-+|+| +|+.+++. .++++..||+++......+...|...|..+.|+|+-+ +|++|+.||.|
T Consensus 167 ------~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyv 239 (370)
T KOG1007|consen 167 ------AEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYV 239 (370)
T ss_pred ------ccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccE
Confidence 00111556667877 56666654 5889999999999988888889999999999999876 57889999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC-CCEEEEeeccCCcceE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD-GEWVIAGSASKGEHKI 319 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d-g~~l~~gs~~~~dg~I 319 (551)
+|||.+.+ ...+..+.+|...+. ++.|.|. .++|++|+. |..|
T Consensus 240 riWD~R~t----------------------------k~pv~el~~HsHWvW-----~VRfn~~hdqLiLs~~S---Ds~V 283 (370)
T KOG1007|consen 240 RIWDTRKT----------------------------KFPVQELPGHSHWVW-----AVRFNPEHDQLILSGGS---DSAV 283 (370)
T ss_pred EEEeccCC----------------------------CccccccCCCceEEE-----EEEecCccceEEEecCC---Ccee
Confidence 99995544 345777888988887 8889884 567788888 8899
Q ss_pred EEEecC--C----------------------------ceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCC
Q 008844 320 YIWDRA--G----------------------------YLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 320 ~iwd~~--~----------------------------~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~ 367 (551)
.+|... . ..+..+..|...|.+++|+.-.+ ++|+-+.||++.|=.+..
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 998643 1 12335566889999999998887 567788899999877654
No 163
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=1.2e-16 Score=144.72 Aligned_cols=238 Identities=19% Similarity=0.250 Sum_probs=179.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC--CCEEEEEcCCCeE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD--KSLTLWDVLKGEK 101 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d--g~i~vwd~~~~~~ 101 (551)
..+..+.|+.+...|..|+.|| .++|..+........... ...|.-+-|+. .+++..+.+ +.++++++..+..
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~--~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTE--GVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCC--CeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 3567778999999999999998 678887654432222211 45566677764 466666554 4599999999999
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
++.+.++..+..+.++.. .++++-.+. |+|||+++.+..-...... .++..+.++.+
T Consensus 81 ICe~~fpt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t~~-----------------~n~~gl~AlS~ 137 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRK-----RLVVCLEES-IYIYDIKDMKLLHTIETTP-----------------PNPKGLCALSP 137 (391)
T ss_pred EEEEecCCceEEEEEccc-----eEEEEEccc-EEEEecccceeehhhhccC-----------------CCccceEeecc
Confidence 999999999999999864 355554444 9999999987653322221 12225677777
Q ss_pred eeCCCEEEEEe--cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCe-EEEEeCcCCccccchhhhh
Q 008844 182 NKYGDLVYVGN--SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRT-IRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 182 s~~g~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~-i~iwd~~~~~~~~~~~~~~ 258 (551)
++.+.+++.-+ ..|.|.|||+.+-+.+..+. .|.+.+-+++|+++|.+|||++..|+ ||||.+
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v------------- 203 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSV------------- 203 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEc-------------
Confidence 77777888643 47999999999999999998 99999999999999999999999887 799982
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
..+. .+..+...+....+.+++|+|++.+|++.+. .++|+||.+.
T Consensus 204 ----------------~~G~---kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~---TeTVHiFKL~ 248 (391)
T KOG2110|consen 204 ----------------PEGQ---KLYEFRRGTYPVSIYSLSFSPDSQFLAASSN---TETVHIFKLE 248 (391)
T ss_pred ----------------CCcc---EeeeeeCCceeeEEEEEEECCCCCeEEEecC---CCeEEEEEec
Confidence 1122 3334444555666779999999999999998 8999999875
No 164
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.4e-19 Score=167.16 Aligned_cols=309 Identities=20% Similarity=0.314 Sum_probs=226.1
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC--CCEEEEEeCCCCEEEEEcCC-
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY--GHRILVSAADKSLTLWDVLK- 98 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~--g~~l~s~s~dg~i~vwd~~~- 98 (551)
|.|.|..|.|+..|..|++|+.|..|.+||+..+.....+.. +|...|....|-|. .+.|++++.||.|++=.+..
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCccccccc-ccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 889999999999999999999999999999999888777764 57889998889884 46799999999999887643
Q ss_pred CeEE---EEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 99 GEKI---TRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 99 ~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
+.+. .....+.++..++.-|+. +..+++++.++.+.-+|++.+............. .....
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~s--p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~--------------~~~v~ 283 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDS--PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE--------------KERVG 283 (559)
T ss_pred cceecceecccccCccceeeecCCC--CCcccccccccceeeeeeccCCccceeeeeccCC--------------cccee
Confidence 3332 222344567788888865 5689999999999999998877544333111100 00115
Q ss_pred ceEEEEeeCC-CEEEEEecCceEEEEECCCCcE------EEeeec-----cCccceEEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 176 PTAACFNKYG-DLVYVGNSKGEILVIDHKSNQI------RALVPV-----SGAAVIKNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 176 i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~------~~~~~~-----~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
...++.+|.. ..+++|+.+-.+++||.+.-.. +..+.. .....|++++|+.++.-|+++-.|-.|++|
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 6788888887 4899999999999999875322 122211 224679999999888778888889999999
Q ss_pred eCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeE-EcCCCCEEEEeeccCCcceEEEE
Q 008844 244 DNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPC-FSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
.-.+........+ . ....-....+++|...-+ +..+- |-|..+|+++|+. .|.|+||
T Consensus 364 ~~~~~~G~~p~~~----------s------~~~~~~k~vYKGHrN~~T---VKgVNFfGPrsEyVvSGSD---CGhIFiW 421 (559)
T KOG1334|consen 364 NKSMGDGSEPDPS----------S------PREQYVKRVYKGHRNSRT---VKGVNFFGPRSEYVVSGSD---CGHIFIW 421 (559)
T ss_pred ccccccCCCCCCC----------c------chhhccchhhcccccccc---cceeeeccCccceEEecCc---cceEEEE
Confidence 6221110000000 0 000011122556654432 22333 5789999999999 8999999
Q ss_pred ecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 323 DRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 323 d~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+.. ++++..+.+-..-|+||.=||.-++||++|.|..|+||...+.+
T Consensus 422 ~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 422 DKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 999 99999999877799999999999999999999999999986544
No 165
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=7.1e-19 Score=159.00 Aligned_cols=217 Identities=13% Similarity=0.183 Sum_probs=159.2
Q ss_pred eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEE
Q 008844 111 PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVY 189 (551)
Q Consensus 111 ~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~ 189 (551)
+..++..+.+ +..++++-+..|.+.||++............. ......+..+....|...-..++|||-. ..++
T Consensus 154 ~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~----~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 154 INRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLE----VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred cceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCcccc----ccccccCceEEecccCccceeeecccccccccc
Confidence 3344444443 45678888999999999987543221111000 0112223344456666678899999954 3488
Q ss_pred EEecCceEEEEECCCCcEEEe--eeccCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCC
Q 008844 190 VGNSKGEILVIDHKSNQIRAL--VPVSGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEP 266 (551)
Q Consensus 190 ~g~~dg~i~i~d~~~~~~~~~--~~~~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (551)
+|..-+.|++|...++.-..- -...|...|-.|+|||.. ..|++|+.||+|+|||++...
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~----------------- 291 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP----------------- 291 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC-----------------
Confidence 888889999999988764221 112689999999999964 578999999999999944321
Q ss_pred CcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC----CceeEEEecCCCceEEE
Q 008844 267 NGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA----GYLVKILEGPKEALIDL 342 (551)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~----~~~~~~l~~h~~~v~~l 342 (551)
...|+. .+.|...|+ .+.|+..-.+||+|+. +|+++|||++ ++++..++-|..+|++|
T Consensus 292 ---------~~~~~~-~kAh~sDVN-----VISWnr~~~lLasG~D---dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi 353 (440)
T KOG0302|consen 292 ---------KKAAVS-TKAHNSDVN-----VISWNRREPLLASGGD---DGTLSIWDLRQFKSGQPVATFKYHKAPITSI 353 (440)
T ss_pred ---------ccceeE-eeccCCcee-----eEEccCCcceeeecCC---CceEEEEEhhhccCCCcceeEEeccCCeeEE
Confidence 023333 377888887 7888888889999999 9999999998 78999999999999999
Q ss_pred EEecCCC-eEEEEcCCCcEEEEecCC
Q 008844 343 AWHPVHP-IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 343 ~~sp~~~-~l~s~s~dg~i~iW~~~~ 367 (551)
.|+|... .|+++|.|.+|.|||+.-
T Consensus 354 eW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 354 EWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EeccccCceEEeccCCCcEEEEEeec
Confidence 9999764 778888899999999963
No 166
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=5e-18 Score=156.82 Aligned_cols=261 Identities=14% Similarity=0.156 Sum_probs=180.8
Q ss_pred EEEecCCCCEEEEEeCC---CCEEEEEcCCCe----EEEEEEcCCCeeEEEEec----CCCCCcEEEEeeCCCCcEEEEc
Q 008844 72 SVCWSKYGHRILVSAAD---KSLTLWDVLKGE----KITRIVLQQTPLQARLHP----GSSTPSLCLACPLSSAPMIVDL 140 (551)
Q Consensus 72 ~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~----~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~i~i~d~ 140 (551)
.+..-|..++|+++-.+ ..+-+|=.+... +.+.+..+..+.++.|.- .+...++++.+..+..|.|||+
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDL 209 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDL 209 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecc
Confidence 44556656666666442 233344322222 122333444556666643 3456779999999999999998
Q ss_pred CCCceeeeccccCCCCCC-CCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccc
Q 008844 141 STGSTSILPIAVPDVANG-IAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAV 218 (551)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 218 (551)
.-.....-.+.+...... .............|...+.+++|+..- +.||+|+.|.+|.+||+.++++..++. .|...
T Consensus 210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~ 288 (463)
T KOG0270|consen 210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKK 288 (463)
T ss_pred ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcCCc
Confidence 765433222222111110 000111223344566678888888776 678999999999999999999999886 78999
Q ss_pred eEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeee
Q 008844 219 IKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKA 297 (551)
Q Consensus 219 i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 297 (551)
|.++.|+|. ..+|++|+.|++|.++|.+.+. +....-.+.+.|. .
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-----------------------------~s~~~wk~~g~VE-----k 334 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-----------------------------NSGKEWKFDGEVE-----K 334 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCcc-----------------------------ccCceEEeccceE-----E
Confidence 999999985 6789999999999999933221 1122223445555 6
Q ss_pred eEEcCCCC-EEEEeeccCCcceEEEEecC--CceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCCCc
Q 008844 298 PCFSGDGE-WVIAGSASKGEHKIYIWDRA--GYLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 298 ~~~s~dg~-~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~~~ 370 (551)
++|.|... .+++++. ||.||-+|++ ++++..++.|.++|.+|++++.-+ +|++++.|+.|++|++.....
T Consensus 335 v~w~~~se~~f~~~td---dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTD---DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EEecCCCceeEEEecC---CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 67777544 4556666 8999999999 899999999999999999988776 788899999999999986553
No 167
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.4e-17 Score=162.36 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=207.5
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC--CceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET--RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
|.-.++|.++||+++++|+|..||.|.+|.-.. +.....-..|-|...|++++|+++|.+|++|+..+.+.+|.+.++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 556699999999999999999999999996432 222222223567899999999999999999999999999999999
Q ss_pred eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 100 EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
+....-+...++..+.++|++. ++..+..|++|.+....+................. ......-.+.+
T Consensus 284 ~kqfLPRLgs~I~~i~vS~ds~---~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~---------k~~~~~l~t~~ 351 (792)
T KOG1963|consen 284 KKQFLPRLGSPILHIVVSPDSD---LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST---------KTRPQSLTTGV 351 (792)
T ss_pred CcccccccCCeeEEEEEcCCCC---eEEEEecCceEEEEeccchhhhhhccCccCCCccc---------cccccccceeE
Confidence 9666667888999999999865 67777779999998876655432221111110000 01111256788
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeec----------cCccceEEEEEeeCCCEEEEee--------CCC--e
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV----------SGAAVIKNIVFSRNGQYLLTNS--------NDR--T 239 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------~~~~~i~~l~~s~~g~~l~t~s--------~Dg--~ 239 (551)
+++|.-+.++..+..|.|.+||+.+...+..+.. .+.-.++.++.+..|.+++|.- .|| .
T Consensus 352 ~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 352 SIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred EEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 8999777788888899999999998877655432 1223577788888899999863 233 3
Q ss_pred EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCC-EEEEeeccCCcc
Q 008844 240 IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGE-WVIAGSASKGEH 317 (551)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~-~l~~gs~~~~dg 317 (551)
+++|- ..+...... -.......|...+. ..+|.+ ... ..++++. +|
T Consensus 432 LKFW~-~n~~~kt~~-----------------------L~T~I~~PH~~~~v-----at~~~~~~rs~~~vta~~---dg 479 (792)
T KOG1963|consen 432 LKFWQ-YNPNSKTFI-----------------------LNTKINNPHGNAFV-----ATIFLNPTRSVRCVTASV---DG 479 (792)
T ss_pred EEEEE-EcCCcceeE-----------------------EEEEEecCCCceeE-----EEEEecCcccceeEEecc---CC
Confidence 67786 222111000 00112233444433 344433 222 6777877 89
Q ss_pred eEEEEecC-----------CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 318 KIYIWDRA-----------GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 318 ~I~iwd~~-----------~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
.++||-+. ..+...-.-|..++++++|+.||..| +++.+++|.|||..+.
T Consensus 480 ~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTK 540 (792)
T ss_pred eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCCh
Confidence 99999883 12222222478899999999999655 5566999999999873
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.7e-16 Score=155.16 Aligned_cols=273 Identities=12% Similarity=0.154 Sum_probs=173.2
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEe-CCCeEEEEeccC-CceeeEeecccccccEEEEEecCCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGC-SDGSCVIWDFET-RGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~-~dg~I~iwd~~~-~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
|.+|+..+......+..+.+.+....++|+|++++|++++ .++.|.+|++.. +.+ ..............++|+|+++
T Consensus 14 I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~~~~~p~~i~~~~~g~ 92 (330)
T PRK11028 14 IHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESPLPGSPTHISTDHQGR 92 (330)
T ss_pred EEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeecCCCCceEEEECCCCC
Confidence 6788875432333444444456678899999999987765 478899999973 332 2221111234567899999999
Q ss_pred EEEEEeC-CCCEEEEEcCC-C---eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCC
Q 008844 81 RILVSAA-DKSLTLWDVLK-G---EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDV 155 (551)
Q Consensus 81 ~l~s~s~-dg~i~vwd~~~-~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 155 (551)
+|++++. ++.|.+|++.+ + ..+..+.....+..+.++|++. .++++...++.|.+||+.+...........
T Consensus 93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~--~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~-- 168 (330)
T PRK11028 93 FLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNR--TLWVPCLKEDRIRLFTLSDDGHLVAQEPAE-- 168 (330)
T ss_pred EEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCC--EEEEeeCCCCEEEEEEECCCCcccccCCCc--
Confidence 9998875 88999999964 3 2233333344567788998763 355677778999999997633211000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-CceEEEEECCC--CcE--EEeeec-c----CccceEEEEEe
Q 008844 156 ANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-KGEILVIDHKS--NQI--RALVPV-S----GAAVIKNIVFS 225 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-dg~i~i~d~~~--~~~--~~~~~~-~----~~~~i~~l~~s 225 (551)
........+..++|+|+|+++++++. ++.|.+|++.. ++. +..+.. + +......+.|+
T Consensus 169 ------------~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 169 ------------VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred ------------eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 00000114668999999999988876 89999999973 332 222211 1 11223468899
Q ss_pred eCCCEEEEeeC-CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC
Q 008844 226 RNGQYLLTNSN-DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG 304 (551)
Q Consensus 226 ~~g~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg 304 (551)
|++++|+++.. ++.|.+|++... ...+. +..+.... .....++|+|+|
T Consensus 237 pdg~~lyv~~~~~~~I~v~~i~~~----------------------------~~~~~-~~~~~~~~--~~p~~~~~~~dg 285 (330)
T PRK11028 237 PDGRHLYACDRTASLISVFSVSED----------------------------GSVLS-FEGHQPTE--TQPRGFNIDHSG 285 (330)
T ss_pred CCCCEEEEecCCCCeEEEEEEeCC----------------------------CCeEE-EeEEEecc--ccCCceEECCCC
Confidence 99999988854 789999982110 00011 11110000 011278999999
Q ss_pred CEEEEeeccCCcceEEEEecC
Q 008844 305 EWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 305 ~~l~~gs~~~~dg~I~iwd~~ 325 (551)
++|+++... ++.|.+|++.
T Consensus 286 ~~l~va~~~--~~~v~v~~~~ 304 (330)
T PRK11028 286 KYLIAAGQK--SHHISVYEID 304 (330)
T ss_pred CEEEEEEcc--CCcEEEEEEc
Confidence 999988753 6899999885
No 169
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=7.6e-18 Score=156.09 Aligned_cols=247 Identities=15% Similarity=0.172 Sum_probs=183.5
Q ss_pred cccEEEEEecCCC--CEEEEEeCCCCEEEEEcCCC----eEEEEEEcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEE
Q 008844 67 VAAITSVCWSKYG--HRILVSAADKSLTLWDVLKG----EKITRIVLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVD 139 (551)
Q Consensus 67 ~~~V~~l~~s~~g--~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d 139 (551)
..+|++++|+|.. +++++|..-|.|-+||+.+. ..+..+..| .++.++.|+|.. ...+++.+.||++++-|
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n--~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN--TSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC--hhheeeeccCceeeeee
Confidence 7899999999964 57888888999999999532 233444444 457899999965 55899999999999999
Q ss_pred cCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE-EEeeeccCccc
Q 008844 140 LSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAV 218 (551)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~ 218 (551)
+.......+...-. ....+..+.|+.....++.|..=|...+||+++... ...+. -|...
T Consensus 264 ~~~~i~e~v~s~~~------------------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kK 324 (498)
T KOG4328|consen 264 FEGNISEEVLSLDT------------------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKK 324 (498)
T ss_pred ecchhhHHHhhcCc------------------cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcc
Confidence 98876433221110 011567788888888888888888999999998776 33333 67779
Q ss_pred eEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccce-eeeeecccccccceeeee
Q 008844 219 IKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSK-CLALFREFQDSITKMHWK 296 (551)
Q Consensus 219 i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~ 296 (551)
|++|+++|-. .+|||++.|++++|||++.-. +.. .+.....|...|.
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~--------------------------~K~sp~lst~~HrrsV~----- 373 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLR--------------------------GKASPFLSTLPHRRSVN----- 373 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhc--------------------------CCCCcceecccccceee-----
Confidence 9999999965 578999999999999932210 011 1233345666676
Q ss_pred eeEEcCCCCEEEEeeccCCcceEEEEecC-----CceeEEEecCCC------ceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 297 APCFSGDGEWVIAGSASKGEHKIYIWDRA-----GYLVKILEGPKE------ALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-----~~~~~~l~~h~~------~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
++.|||.|-.|++.+. |..|+|||.. -.+...+. |.. .....+|.|+..+|+++-.-..|-|++-
T Consensus 374 sAyFSPs~gtl~TT~~---D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 374 SAYFSPSGGTLLTTCQ---DNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred eeEEcCCCCceEeecc---CCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 8999998888999999 9999999984 33444444 321 2455789999999999999888999998
Q ss_pred CCCC
Q 008844 366 DYTE 369 (551)
Q Consensus 366 ~~~~ 369 (551)
..++
T Consensus 450 ~~~q 453 (498)
T KOG4328|consen 450 NGGQ 453 (498)
T ss_pred CCCE
Confidence 7765
No 170
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=3.7e-19 Score=164.94 Aligned_cols=316 Identities=18% Similarity=0.234 Sum_probs=232.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 104 (551)
....+.|+.+|++|+.|+.-|.|-.+|+.++.+...+.. ...|..+.|..+..+++++ +...+.||| ..|..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC 205 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence 346789999999999999999999999999999988865 4789999999988877766 577899999 67889999
Q ss_pred EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC
Q 008844 105 IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184 (551)
Q Consensus 105 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 184 (551)
+..+..+..+.|.|. ..++++++..|.+...|+.+|+........ ...+..++-+|-
T Consensus 206 lk~~~~v~rLeFLPy---HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~--------------------~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPY---HFLLVAASEAGFLKYQDVSTGKLVASIRTG--------------------AGRTDVMKQNPY 262 (545)
T ss_pred hhhcCchhhhcccch---hheeeecccCCceEEEeechhhhhHHHHcc--------------------CCccchhhcCCc
Confidence 999999999999996 447788888899999999999865332111 116778888999
Q ss_pred CCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCC
Q 008844 185 GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIA 264 (551)
Q Consensus 185 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (551)
+..+-+|..+|+|.+|...+.+++..+. .|.++|.+|++.++|+|++|++.|+.++|||++.-
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---------------- 325 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---------------- 325 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccc----------------
Confidence 9999999999999999999998866654 89999999999999999999999999999993221
Q ss_pred CCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--Cc--eeEEEecC--CCc
Q 008844 265 EPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GY--LVKILEGP--KEA 338 (551)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~--~~~~l~~h--~~~ 338 (551)
..+..+.. ..+.+.++||..| +||++. ...|.||.=. +. .-..+..| .++
T Consensus 326 -------------~ql~t~~t------p~~a~~ls~Sqkg-lLA~~~----G~~v~iw~d~~~~s~~~~~pYm~H~~~~~ 381 (545)
T KOG1272|consen 326 -------------YQLHTYRT------PHPASNLSLSQKG-LLALSY----GDHVQIWKDALKGSGHGETPYMNHRCGGP 381 (545)
T ss_pred -------------cccceeec------CCCcccccccccc-ceeeec----CCeeeeehhhhcCCCCCCcchhhhccCcc
Confidence 11111111 1112266777655 344443 3579999644 22 11111122 358
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceeecCCcceeceeceeeecccccCCcchhhhhhccccCCCccceeee
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLNTETEKVKESNVNEDEEVDIVA 418 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~spd~~~l~~~~~~~e~e~e~~~~~~~~~~~~~~~~ed~~~d~~~ 418 (551)
|..+.|+|-...|..|..-|.-.|.=...++ |.+..++.|. |....+..+.+...+-|....+.++
T Consensus 382 V~~l~FcP~EDvLGIGH~~G~tsilVPGsGe------PN~Ds~e~nP--------fetrKQRqE~EVr~LLeKippElIs 447 (545)
T KOG1272|consen 382 VEDLRFCPYEDVLGIGHAGGITSILVPGSGE------PNYDSLEDNP--------FETRKQRQEKEVRSLLEKIPPELIS 447 (545)
T ss_pred cccceeccHHHeeeccccCCceeEeccCCCC------CCcchhccCc--------chhhhHHhHHHHHHHHhhCChHhEE
Confidence 9999999998888888777765554444443 4444444333 5544444444555555777777777
Q ss_pred ccCCC
Q 008844 419 VDKDA 423 (551)
Q Consensus 419 ~~~~~ 423 (551)
.++..
T Consensus 448 Ldp~~ 452 (545)
T KOG1272|consen 448 LDPRV 452 (545)
T ss_pred echhh
Confidence 77664
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.4e-18 Score=165.02 Aligned_cols=270 Identities=13% Similarity=0.130 Sum_probs=182.4
Q ss_pred ecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC--------CceeeEeecccccccEEEEEecCCCCEEEEEeCCC
Q 008844 18 EEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET--------RGIAKELRDKECVAAITSVCWSKYGHRILVSAADK 89 (551)
Q Consensus 18 ~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~--------~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg 89 (551)
....|...|.+++|.|-...|++++.||+|.+|+++. -+.+.+|++| .++|.|+++.+++..+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH--~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH--EGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc--cCceEEEEecCCceEEEeeccCc
Confidence 3444778899999999999999999999999999932 1345566655 99999999999999999999999
Q ss_pred CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 90 SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
+|+.|++....- ....+.+ ..+. ...
T Consensus 367 ~I~~w~~p~n~d--p~ds~dp--------------~vl~--------------------------------------~~l 392 (577)
T KOG0642|consen 367 TIRCWNLPPNQD--PDDSYDP--------------SVLS--------------------------------------GTL 392 (577)
T ss_pred eeeeeccCCCCC--cccccCc--------------chhc--------------------------------------cce
Confidence 999998752110 0000000 0000 011
Q ss_pred CCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcC
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLL 247 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~ 247 (551)
.+|...+..+++++....|++++.||++++|+...... .++.. ...+.-.++.+-... .++++...-+.--+++...
T Consensus 393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred eccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh
Confidence 22333788899999998999999999999999887766 22221 112333444443322 1222222222222222000
Q ss_pred CccccchhhhhhhccCCCCCcceeeeeccceeeeeecc--cccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 248 PLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE--FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
...+..+.. .........++.+...|.+.+.+++-. ++.|+++|..
T Consensus 472 -----------------------------~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he---d~~Ir~~dn~ 519 (577)
T KOG0642|consen 472 -----------------------------VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE---DRSIRFFDNK 519 (577)
T ss_pred -----------------------------hhheeeccccCCCcccccCccceEEecCCCCeeEeccc---CCceeccccc
Confidence 000111111 111111112336778899999999998 9999999999
Q ss_pred -CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceeecC
Q 008844 326 -GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFAP 376 (551)
Q Consensus 326 -~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~sp 376 (551)
+.++.....|...++++++.|+|.+|++++.||.|++|.+....+...+.+
T Consensus 520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred ccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 999999999999999999999999999999999999999987665444433
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=8.5e-16 Score=155.58 Aligned_cols=301 Identities=22% Similarity=0.393 Sum_probs=222.6
Q ss_pred CccccccCC-CCccceeecccccceEEEEEEcCCCCEEEEEeC-CCeEEEEeccCCceeeEeecccccccEEEEEecCCC
Q 008844 2 NAPIIDPLQ-GDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS-DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 2 nl~lwd~~~-~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g 79 (551)
.+.+|+... ......+.. |...|.+++|+|++.++++++. ++.+++|++.++..+..+.+| ...|.+++|+|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~ 210 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEG--HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH--TDPVSSLAFSPDG 210 (466)
T ss_pred cEEEEEecCCCeEEEEEec--CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC--CCceEEEEEcCCc
Confidence 467788776 443344433 7889999999999999998885 999999999988888888764 8999999999999
Q ss_pred C-EEEEEeCCCCEEEEEcCCCeEEE-EEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCC
Q 008844 80 H-RILVSAADKSLTLWDVLKGEKIT-RIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVAN 157 (551)
Q Consensus 80 ~-~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (551)
. ++++++.|+.|.+||...+..+. .+..+.......|+|.+ .++++++.++.+++|++..........
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~------- 280 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSSSLLRTL------- 280 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCCcEEEEE-------
Confidence 8 55555889999999998888777 56666554322688876 467799999999999998776511111
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee-ccCccceEEEEEeeCCCEEEEe-e
Q 008844 158 GIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP-VSGAAVIKNIVFSRNGQYLLTN-S 235 (551)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~t~-s 235 (551)
..|...+.++.|+|++..+++++.++.+.+|+..+........ ..|...+..+.|.+++..++.+ .
T Consensus 281 ------------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (466)
T COG2319 281 ------------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348 (466)
T ss_pred ------------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec
Confidence 0112388999999988888889889999999998887655553 3566679999994332556655 6
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEE-eeccC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIA-GSASK 314 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~-gs~~~ 314 (551)
.|+.+.+|+.... ........... +. .+.+++ ...++. +..
T Consensus 349 ~d~~~~~~~~~~~-----------------------------~~~~~~~~~~~-~~-----~~~~~~-~~~~~~~~~~-- 390 (466)
T COG2319 349 DDGTIRLWDLRTG-----------------------------KPLKTLEGHSN-VL-----SVSFSP-DGRVVSSGST-- 390 (466)
T ss_pred CCCcEEeeecCCC-----------------------------ceeEEecCCce-EE-----EEEECC-CCCEEEEecC--
Confidence 7899999982211 11111111111 22 677877 533443 455
Q ss_pred CcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 315 GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 315 ~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
++.+.+|+.. .........+...+....+.+++..+++++.++.+++|++..
T Consensus 391 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 391 -DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred -CCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 7999999999 666665554437899999999999999999999999999987
No 173
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=3.5e-17 Score=145.59 Aligned_cols=320 Identities=18% Similarity=0.212 Sum_probs=199.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE-eCCCCEEEEEcCCCeEEEEEEc
Q 008844 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS-AADKSLTLWDVLKGEKITRIVL 107 (551)
Q Consensus 29 l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~~ 107 (551)
++|||+|++||+.+.- .+.|-|.++-++.+.+.. -..|.-|.|..+.-+++.+ ..++.|.+|++...+....+..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 4799999999998754 899999999888777754 4778899999888776665 4588999999998888888765
Q ss_pred C-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCC--------CCCCCCCCCCCC-----------
Q 008844 108 Q-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDV--------ANGIAPSSRNKY----------- 167 (551)
Q Consensus 108 ~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~----------- 167 (551)
. .+...++|+|++. .++.+...+-.|.+|.+.+.....++..-... ....+...+..+
T Consensus 90 g~agls~~~WSPdgr--hiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGR--HILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcc--eEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 5 4577899999884 48899999999999999998876554322210 000000000000
Q ss_pred -----CCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 168 -----SDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 168 -----~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
.........+.+.|+|+|+.|+ +||.--.-.+..+ ...-.+..++|+|.+++|++|+.|+.+||
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhh
Confidence 0001111334455555555443 4443322222222 33466888999999999999999999998
Q ss_pred EeCcCCccccchhhh--hhhcc--------------------CCCCCcce---------eeee-ccceeeeeeccccc-c
Q 008844 243 YDNLLPLKNGLEALV--DIEKG--------------------IAEPNGIE---------KMKM-VGSKCLALFREFQD-S 289 (551)
Q Consensus 243 wd~~~~~~~~~~~~~--~~~~~--------------------~~~~~~~~---------~~~~-~~~~~~~~~~~~~~-~ 289 (551)
.+-+. .+.-.+.+. .+..+ ...+.... .+.. .....+..++...+ +
T Consensus 237 lnh~t-Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p 315 (447)
T KOG4497|consen 237 LNHFT-WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP 315 (447)
T ss_pred hceee-eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCC
Confidence 76111 110000000 00000 00000000 0000 00011111111111 1
Q ss_pred cceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 290 ITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 290 v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
-.......++||+|..|+++-...- -+.+.+||++ -++...+. ...+|....|+|..+.|+.+....++++|.....
T Consensus 316 nPk~g~g~lafs~Ds~y~aTrnd~~-PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDSTYAATRNDKY-PNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CcccccceeeecCCceEEeeecCCC-CceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 1122334789999999999887533 5789999999 54444443 5678999999999999999888888999998763
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=2e-17 Score=150.56 Aligned_cols=214 Identities=11% Similarity=0.211 Sum_probs=162.2
Q ss_pred cccccEEEEEecC-CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 65 ECVAAITSVCWSK-YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 65 ~h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
+|+++|..++|+| +...|++||.|.+|.||.+-.+.....+. .++..+..
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--epvv~L~g--------------------------- 129 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--EPVVELYG--------------------------- 129 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--cceEEEee---------------------------
Confidence 5699999999999 56789999999999999987665433322 22222111
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNI 222 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l 222 (551)
|...|..++|+|.- +.|++++.|.+|.||++.+++.+..+ .|...|+++
T Consensus 130 ----------------------------H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l--~hpd~i~S~ 179 (472)
T KOG0303|consen 130 ----------------------------HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL--DHPDMVYSM 179 (472)
T ss_pred ----------------------------cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec--CCCCeEEEE
Confidence 22267778888876 78899999999999999999998887 699999999
Q ss_pred EEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC
Q 008844 223 VFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG 302 (551)
Q Consensus 223 ~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~ 302 (551)
.|+.+|.+|+|++.|..|||||.. .+..+..-..|.+.-.. .+.|-.
T Consensus 180 sfn~dGs~l~TtckDKkvRv~dpr-----------------------------~~~~v~e~~~heG~k~~----Raifl~ 226 (472)
T KOG0303|consen 180 SFNRDGSLLCTTCKDKKVRVIDPR-----------------------------RGTVVSEGVAHEGAKPA----RAIFLA 226 (472)
T ss_pred EeccCCceeeeecccceeEEEcCC-----------------------------CCcEeeecccccCCCcc----eeEEec
Confidence 999999999999999999999932 23334444455554331 567888
Q ss_pred CCCEEEEeeccCCcceEEEEecC--CceeE--EEecCCCceEEEEEecCCCeEEEEcC-CCcEEEEecCCCCcc
Q 008844 303 DGEWVIAGSASKGEHKIYIWDRA--GYLVK--ILEGPKEALIDLAWHPVHPIIVSVSL-TGWVYIWAKDYTENW 371 (551)
Q Consensus 303 dg~~l~~gs~~~~dg~I~iwd~~--~~~~~--~l~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~~~~~~ 371 (551)
+|.++.+|.....+..+-+||.. .+++. .+. ....|.---|.|+..+|+.+|. |+.||.|.+......
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~ 299 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPF 299 (472)
T ss_pred cCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCce
Confidence 99977777655558899999987 44332 332 3456777778999999988887 999999999876533
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=1.9e-19 Score=177.66 Aligned_cols=248 Identities=22% Similarity=0.344 Sum_probs=193.8
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
.|...|.|+.|...|.++++|+.|..|+||.++++.++..+++| .+.|+.++.+.+..++++++.|..|++|.+.++.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh--s~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH--SGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC--ccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 47789999999999999999999999999999999999999877 9999999999999999999999999999999999
Q ss_pred EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 101 KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
++..+.+|.. .|++++
T Consensus 266 pvsvLrghtg----------------------------------------------------------------avtaia 281 (1113)
T KOG0644|consen 266 PVSVLRGHTG----------------------------------------------------------------AVTAIA 281 (1113)
T ss_pred hHHHHhcccc----------------------------------------------------------------ceeeec
Confidence 8887776653 778888
Q ss_pred EeeCCCEEEEEecCceEEEEECCCCcEEEee----eccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhh
Q 008844 181 FNKYGDLVYVGNSKGEILVIDHKSNQIRALV----PVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEAL 256 (551)
Q Consensus 181 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~----~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (551)
|+|.. +.+.||++++||.+- ..+... .......+.++.|..++..++|++.|+.-+.|...
T Consensus 282 fsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~---------- 346 (1113)
T KOG0644|consen 282 FSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFE---------- 346 (1113)
T ss_pred cCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhh----------
Confidence 88754 667799999999881 111111 11234667788888889999999999999999711
Q ss_pred hhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC-CEEEEeeccCCcceEEEEecC-CceeEEEec
Q 008844 257 VDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG-EWVIAGSASKGEHKIYIWDRA-GYLVKILEG 334 (551)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg-~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~ 334 (551)
.+..+...+. -+.++.+- .+.+++-. +..+.+|++. |.++..+.+
T Consensus 347 -------------------------~l~~~~~~li-----f~t~ssd~~~~~~~ar~---~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 347 -------------------------QLAWRSNLLI-----FVTRSSDLSSIVVTARN---DHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred -------------------------HhhhhccceE-----EEeccccccccceeeee---eeEeeeeecccchhhhhhcc
Confidence 1111111111 11222222 45555655 7899999999 999999999
Q ss_pred CCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCCCcc------------eeecCCcceec
Q 008844 335 PKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYTENW------------SAFAPDFKELE 382 (551)
Q Consensus 335 h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~~~~------------~~~spd~~~l~ 382 (551)
|...+..|.+||-++ +..+++.||...|||+-.+-.. .+|++||..++
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEe
Confidence 999999999999887 4568889999999999765422 27888877654
No 176
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.4e-17 Score=144.49 Aligned_cols=262 Identities=16% Similarity=0.271 Sum_probs=174.7
Q ss_pred CCccccccC--CCCccceeecccccceEEEEEEcC--CCCEEEEEeCCCeEEEEeccC-------Cc--eeeEeeccccc
Q 008844 1 MNAPIIDPL--QGDFPEVIEEYLEHGVMKCIAFNR--RGTLLAAGCSDGSCVIWDFET-------RG--IAKELRDKECV 67 (551)
Q Consensus 1 mnl~lwd~~--~~~~~~~l~~~~h~~~V~~l~fs~--dg~~latg~~dg~I~iwd~~~-------~~--~~~~~~~~~h~ 67 (551)
|.+.|||.. ++.+..+-.-..|.+.|..+.|.+ -|+.+|+++.|+++.||.-.. .+ ...++... .
T Consensus 35 q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds--r 112 (361)
T KOG2445|consen 35 QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS--R 112 (361)
T ss_pred CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC--C
Confidence 568899853 555544444445889999999965 489999999999999997521 12 23344433 7
Q ss_pred ccEEEEEecCC--CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 68 AAITSVCWSKY--GHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 68 ~~V~~l~~s~~--g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
..|+.++|.|. |-.|++++.||+|+||+...---+......+.+..+...|
T Consensus 113 ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp--------------------------- 165 (361)
T KOG2445|consen 113 SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP--------------------------- 165 (361)
T ss_pred cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc---------------------------
Confidence 89999999995 7789999999999999976654444444333221111111
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC---CEEEEEecC-----ceEEEEECCCCc----EEEeeec
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG---DLVYVGNSK-----GEILVIDHKSNQ----IRALVPV 213 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~~g~~d-----g~i~i~d~~~~~----~~~~~~~ 213 (551)
+.+.....|+.|+|.. .+|++|+.+ +.++||...... .+..+.
T Consensus 166 ------------------------~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~- 220 (361)
T KOG2445|consen 166 ------------------------GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP- 220 (361)
T ss_pred ------------------------ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-
Confidence 1112266788888654 578888765 578888765443 244454
Q ss_pred cCccceEEEEEeeC-C---CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccc
Q 008844 214 SGAAVIKNIVFSRN-G---QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDS 289 (551)
Q Consensus 214 ~~~~~i~~l~~s~~-g---~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (551)
.|..+|+.|+|.|+ | ..||+++.|| |+||.+. ........ .....+..... .....+..+..|++.
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~-~~~s~i~~-----ee~~~~~~~~~---l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK-VARSAIEE-----EEVLAPDLMTD---LPVEKVSELDDHNGE 290 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe-eccchhhh-----hcccCCCCccc---cceEEeeeccCCCCc
Confidence 78999999999997 3 4699999999 9999932 11111000 00011111111 123446678889988
Q ss_pred cceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC----CceeEEEec
Q 008844 290 ITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA----GYLVKILEG 334 (551)
Q Consensus 290 v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~----~~~~~~l~~ 334 (551)
|. .+.|.-.|..|++.+. ||+|++|... .++...+..
T Consensus 291 VW-----rv~wNmtGtiLsStGd---DG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 291 VW-----RVRWNMTGTILSSTGD---DGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred eE-----EEEEeeeeeEEeecCC---CceeeehhhhhhhhheeeeEEec
Confidence 88 7788888999999998 9999999876 445555543
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.8e-18 Score=157.96 Aligned_cols=199 Identities=23% Similarity=0.303 Sum_probs=156.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEE
Q 008844 27 KCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIV 106 (551)
Q Consensus 27 ~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 106 (551)
.+++|+.+|..|++|+.||++|||++.....+.....| ...|.+|.|+|||++|++.+.| ..+||++++|..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~--~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH--HAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh--cCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 78999999999999999999999998777766666544 8999999999999999999999 89999999997766655
Q ss_pred cCC---CeeEEEEecCCCCCcEEEEeeC--CCCcEEEEcCCCcee-eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 107 LQQ---TPLQARLHPGSSTPSLCLACPL--SSAPMIVDLSTGSTS-ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 107 ~~~---~~~~~~~~p~~~~~~~~~~~~~--~~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
... ....++|..++....+.++... .+.+..|++.....- .+.... .......|++++
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~----------------~~~~~~siSsl~ 288 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK----------------KIKRFKSISSLA 288 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh----------------hhhccCcceeEE
Confidence 322 2445677766544445544433 345666665443221 000000 000011799999
Q ss_pred EeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 181 FNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 181 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.+.+|++++.|+.+|.|.|++..+.+.+...+..|...|+.+.|+|+.+++++.+.+..++|..
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 9999999999999999999999999999999889999999999999999999999999999887
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.9e-19 Score=181.48 Aligned_cols=250 Identities=21% Similarity=0.340 Sum_probs=178.8
Q ss_pred EEEEEcCCCC-EEEEEe----------CCCeEEEEecc--CCc----eeeEeecccccccEEEEEecCCCCE----EEEE
Q 008844 27 KCIAFNRRGT-LLAAGC----------SDGSCVIWDFE--TRG----IAKELRDKECVAAITSVCWSKYGHR----ILVS 85 (551)
Q Consensus 27 ~~l~fs~dg~-~latg~----------~dg~I~iwd~~--~~~----~~~~~~~~~h~~~V~~l~~s~~g~~----l~s~ 85 (551)
..++|+|.+. +||+|. .+.++-||.+. +.. .+..+. .....+.|+|.+.|.. |+.|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~---s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ---SSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc---ccccceeeeecccCCCccceeecc
Confidence 3568999886 666553 24456666543 222 222232 2567889999987765 7778
Q ss_pred eCCCCEEEEEcCCC---eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 86 AADKSLTLWDVLKG---EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 86 s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
..||.|.+||...- .....+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~l--------------------------------------------------------- 109 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVL--------------------------------------------------------- 109 (1049)
T ss_pred ccCCceEEecchhhccCcchHHH---------------------------------------------------------
Confidence 88999999997541 100000
Q ss_pred CCCCCCCCCCCCCceEEEEeeCCC-EEEEEecCceEEEEECCCCcEEEee-eccCccceEEEEEeeC-CCEEEEeeCCCe
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYGD-LVYVGNSKGEILVIDHKSNQIRALV-PVSGAAVIKNIVFSRN-GQYLLTNSNDRT 239 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~l~~s~~-g~~l~t~s~Dg~ 239 (551)
.....|...|..+.|++... +|++|+.+|.|.|||+...+.-... .......|.+++|+.. ...|++++.+|.
T Consensus 110 ----a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 110 ----ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred ----hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence 01122344888899999874 9999999999999999885543333 1134678999999875 456888888999
Q ss_pred EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC-CEEEEeeccCCcce
Q 008844 240 IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG-EWVIAGSASKGEHK 318 (551)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg-~~l~~gs~~~~dg~ 318 (551)
+.|||+.. .+.+..+. ....+..|+.++|+|++ ..|++++.+++.-.
T Consensus 186 ~~iWDlr~-----------------------------~~pii~ls---~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 186 AVIWDLRK-----------------------------KKPIIKLS---DTPGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred ceeccccC-----------------------------CCcccccc---cCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 99999332 12222222 22333667799999976 45667776655788
Q ss_pred EEEEecC--CceeEEEecCCCceEEEEEecCC-CeEEEEcCCCcEEEEecCCCCcce
Q 008844 319 IYIWDRA--GYLVKILEGPKEALIDLAWHPVH-PIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 319 I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
|.+||++ ..+++++++|...|.+|.|++.+ .+|+|++.|++|.+|+.++++...
T Consensus 234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 9999999 88999999999999999999988 799999999999999999977443
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=157.11 Aligned_cols=212 Identities=17% Similarity=0.215 Sum_probs=149.6
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC--CCCEEEEEeCCCCEEEEEcCC
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK--YGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~vwd~~~ 98 (551)
.|+|.|+|+.|+.+|.+|++|+.|-.|.|||....+++..+.. +|...|.++.|-| +.+.+++|+.|..|+++|+..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 3899999999999999999999999999999998888888875 5799999999998 467889999999999999974
Q ss_pred Ce----------EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCC
Q 008844 99 GE----------KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKY 167 (551)
Q Consensus 99 ~~----------~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (551)
.+ ....+..|. .+..++..|++ ++.+.+++.||+++-+|++....-.............
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~--PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny-------- 196 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG--PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY-------- 196 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCC--CceEEEecCCcceeeecccCCccCCccccccHHHHHh--------
Confidence 21 122222222 23445555544 6799999999999999998744211000000000000
Q ss_pred CCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCC--------Cc----------EEEeeeccCc-----------c
Q 008844 168 SDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKS--------NQ----------IRALVPVSGA-----------A 217 (551)
Q Consensus 168 ~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~--------~~----------~~~~~~~~~~-----------~ 217 (551)
...-....|+.++|.. .+|++|+++-..++||.+. +. ++..+...|. .
T Consensus 197 --~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 197 --NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred --chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 0000156789999987 7899999999999999432 11 1222221221 1
Q ss_pred ceEEEEEeeCCCEEEEeeCCCeEEEEeC
Q 008844 218 VIKNIVFSRNGQYLLTNSNDRTIRIYDN 245 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~Dg~i~iwd~ 245 (551)
.++-++|+|+|.-|++.-..-.|++||+
T Consensus 275 ~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 2567889999998888777778999983
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.1e-17 Score=164.68 Aligned_cols=290 Identities=17% Similarity=0.198 Sum_probs=200.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc-cccccEEEEEecC--CCCEEEEEeCCCCEEEEEcC-C--
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK-ECVAAITSVCWSK--YGHRILVSAADKSLTLWDVL-K-- 98 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~-~h~~~V~~l~~s~--~g~~l~s~s~dg~i~vwd~~-~-- 98 (551)
+-..+.|+|-...++++...-.|+|||.+.++.+..|..+ .....|+.|.+-. |..+|++|+.||.|+||+-. +
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4567788888889999887788999999999887777533 1245788998865 45689999999999999632 2
Q ss_pred --CeEEEEEEcC------CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeee-ccccCCCCCCCCCCCCCCCCC
Q 008844 99 --GEKITRIVLQ------QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL-PIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 99 --~~~~~~~~~~------~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 169 (551)
.+.+..+..- .....+.+.-... .-.+++++.-..|+|||........- +..
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~------------------ 1206 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SGHLLVTGDVRSIRIWDAHKEQVVADIPYG------------------ 1206 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhh-CCeEEecCCeeEEEEEecccceeEeecccC------------------
Confidence 2333332211 1111222222211 22456666688899999987665432 111
Q ss_pred CCCCCCceEEEEee-CCCEEEEEecCceEEEEECCCCcE---EEeeeccCccc--eEEEEEeeCCCE-EEEeeCCCeEEE
Q 008844 170 GTPPFTPTAACFNK-YGDLVYVGNSKGEILVIDHKSNQI---RALVPVSGAAV--IKNIVFSRNGQY-LLTNSNDRTIRI 242 (551)
Q Consensus 170 ~~~~~~i~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~~~~--i~~l~~s~~g~~-l~t~s~Dg~i~i 242 (551)
....++++.-+. .|+.|++|..||.|++||.+.... +.... .|... |..+.+.+.|-- |++|+.+|.|++
T Consensus 1207 --s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1207 --SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred --CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 111455555433 369999999999999999986543 34443 67766 999999997754 999999999999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
||++++.....- .+..........+ ++..++....||+|+. +.|.||
T Consensus 1284 ~DlR~~~~e~~~------------------------~iv~~~~yGs~lT-----al~VH~hapiiAsGs~----q~ikIy 1330 (1387)
T KOG1517|consen 1284 LDLRMSSKETFL------------------------TIVAHWEYGSALT-----ALTVHEHAPIIASGSA----QLIKIY 1330 (1387)
T ss_pred EecccCcccccc------------------------eeeeccccCccce-----eeeeccCCCeeeecCc----ceEEEE
Confidence 996553111000 0000011111233 7888999999999996 789999
Q ss_pred ecCCceeEEEecC-------CCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 323 DRAGYLVKILEGP-------KEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 323 d~~~~~~~~l~~h-------~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
++.|+.+..++.+ .+.+.+++|||...+||+|+.|.+|.||.....+
T Consensus 1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9998777766543 2568999999999999999999999999987643
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.4e-17 Score=137.07 Aligned_cols=253 Identities=12% Similarity=0.190 Sum_probs=175.6
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC--------ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR--------GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~--------~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
..|.+-+++|.+++|++|..+|.|.+..+.+. .....+....|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 45677789999999999999999999987531 122223334569999999998 45778777 69999998
Q ss_pred cCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.+........ -.+|.+......- ...--.
T Consensus 88 W~E~~es~~~-----------------------------K~lwe~~~P~~~~----------------------~~evPe 116 (325)
T KOG0649|consen 88 WNEEEESLAT-----------------------------KRLWEVKIPMQVD----------------------AVEVPE 116 (325)
T ss_pred ehhhhhhccc-----------------------------hhhhhhcCccccC----------------------cccCCc
Confidence 7543221000 0111111110000 000017
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
|+++...|..+-++.++.|+.++-||+++|+....+. +|...|.+++--.....+++|+.||++||||..
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k--------- 186 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK--------- 186 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcceeecCCCccEEEEecc---------
Confidence 8999999888778877899999999999999999987 999999999985555579999999999999922
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeeccccccc-ceeeee--eeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEE
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSI-TKMHWK--APCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKI 331 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~ 331 (551)
+.+++..+..+...- .+-.|. -.++.-+..+|++|.. ..+.+|++. .++..+
T Consensus 187 --------------------t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----p~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 187 --------------------TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----PKLSLWHLRSSESTCV 242 (325)
T ss_pred --------------------ccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC----CceeEEeccCCCceEE
Confidence 234444433322211 111111 2466677889999986 679999999 777777
Q ss_pred EecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 332 LEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 332 l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+.- ..++..+.|- ...+++++....|.-|.+..
T Consensus 243 fpi-pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 243 FPI-PARVHLVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred Eec-ccceeEeeee--cceEEEeccccceeeeeecc
Confidence 663 4668888884 44788888777888888764
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=4e-17 Score=142.87 Aligned_cols=264 Identities=14% Similarity=0.164 Sum_probs=178.3
Q ss_pred ceeecccccceEEEEEEcC---CCCEEEEEeC----CCeEEEEec--cCCceeeEeecccccccEEEEEecCCC-----C
Q 008844 15 EVIEEYLEHGVMKCIAFNR---RGTLLAAGCS----DGSCVIWDF--ETRGIAKELRDKECVAAITSVCWSKYG-----H 80 (551)
Q Consensus 15 ~~l~~~~h~~~V~~l~fs~---dg~~latg~~----dg~I~iwd~--~~~~~~~~~~~~~h~~~V~~l~~s~~g-----~ 80 (551)
+.+..+.-.-.+.++.|+. ...+||.|+. ...|.|-.+ ++++.+..-. ..|..+++.+.|.|+. .
T Consensus 36 ~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcc
Confidence 3344455556788999984 2458888874 355666544 4455544433 4579999999999975 3
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
+|+|++ ..+++|.+.......... . .++.
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~--~-----~L~~------------------------------------------ 143 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQ--S-----VLNN------------------------------------------ 143 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehh--h-----hhcc------------------------------------------
Confidence 566554 579999886321100000 0 0000
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcE--EEeeeccCccceEEEEEeeCC-CEEEEeeC
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQI--RALVPVSGAAVIKNIVFSRNG-QYLLTNSN 236 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~s~~g-~~l~t~s~ 236 (551)
........+++++.|+.-. ++|.+.+-|-+..|||+.++.. +.+-...|...|..|+|...+ +.+|+.+.
T Consensus 144 ------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 144 ------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred ------CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecC
Confidence 0001112278888887655 7888999999999999999743 333333899999999999865 47889999
Q ss_pred CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCC
Q 008844 237 DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKG 315 (551)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~ 315 (551)
||.+|+||++.-.. ...+..-.....+.. .++|++ |-+|+|+-..+
T Consensus 218 DGSvRmFDLR~leH--------------------------STIIYE~p~~~~pLl-----RLswnkqDpnymATf~~d-- 264 (364)
T KOG0290|consen 218 DGSVRMFDLRSLEH--------------------------STIIYEDPSPSTPLL-----RLSWNKQDPNYMATFAMD-- 264 (364)
T ss_pred CCcEEEEEeccccc--------------------------ceEEecCCCCCCcce-----eeccCcCCchHHhhhhcC--
Confidence 99999999322110 000111011122222 667776 55777776653
Q ss_pred cceEEEEecC--CceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCCC
Q 008844 316 EHKIYIWDRA--GYLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 316 dg~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~~ 369 (551)
...|.|.|++ +.++..|++|.+.|+.++|.|... .|+|||.|..+.|||+...-
T Consensus 265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 4679999999 899999999999999999999875 89999999999999998643
No 183
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.3e-17 Score=144.93 Aligned_cols=198 Identities=11% Similarity=0.118 Sum_probs=149.4
Q ss_pred EEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeec
Q 008844 70 ITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILP 149 (551)
Q Consensus 70 V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 149 (551)
-.|+.|++.|.+|++|+.||.|.|||+.+...-+.+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH----------------------------------------- 64 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH----------------------------------------- 64 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-----------------------------------------
Confidence 789999999999999999999999999886643333322
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCC
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQ 229 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 229 (551)
..+|+++||+++|+.|++++.|..|.+||+..|.++..+ ....+|..+.|+|..+
T Consensus 65 -----------------------~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 65 -----------------------VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRKR 119 (405)
T ss_pred -----------------------ccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--EccCccceeeeccccC
Confidence 238999999999999999999999999999999998888 5788999999999654
Q ss_pred EEEEee-CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEE
Q 008844 230 YLLTNS-NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVI 308 (551)
Q Consensus 230 ~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~ 308 (551)
..++++ .+..-.+.++..+. -..+..-...-.+..-.+..|.+.|+||+
T Consensus 120 n~~va~~~~~sp~vi~~s~~~------------------------------h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 120 NKCVATIMEESPVVIDFSDPK------------------------------HSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred CeEEEEEecCCcEEEEecCCc------------------------------eeeccCCCccccccccccccccCCCCEEE
Confidence 333332 22222333311010 00111111110111111346889999999
Q ss_pred EeeccCCcceEEEEecC-CceeEEEecCC-CceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 309 AGSASKGEHKIYIWDRA-GYLVKILEGPK-EALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 309 ~gs~~~~dg~I~iwd~~-~~~~~~l~~h~-~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+|.. .|.+.|++.. .+++..++-.. ..|..+.++..|.+|+.-+.|..||.|++.
T Consensus 170 tGts---KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 170 TGTS---KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EecC---cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9999 8999999999 88888887666 789999999999999999999999999987
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=5.8e-15 Score=149.47 Aligned_cols=287 Identities=24% Similarity=0.393 Sum_probs=214.1
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeEeecccccccEEEEEe-cCCCC-EEEEEeC-CCCEEEEEc
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG-IAKELRDKECVAAITSVCW-SKYGH-RILVSAA-DKSLTLWDV 96 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~-~~~~~~~~~h~~~V~~l~~-s~~g~-~l~s~s~-dg~i~vwd~ 96 (551)
.|...|.++.|.+.+..++.++.|+.+.+|+...+. ....+... +...+..+.+ ++++. +++..+. |+.+.+|++
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL-HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc-CCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 477899999999999999999999999999999876 66666653 1246777777 78777 5555455 999999999
Q ss_pred CC-CeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeC-CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LK-GEKITRIVLQQT-PLQARLHPGSSTPSLCLACPL-SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 97 ~~-~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
.. ......+..+.. +..+.++|.+. .++++.. ++.+.+|++..+........ |.
T Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 198 (466)
T COG2319 142 STPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTLAG--------------------HT 198 (466)
T ss_pred cCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEeecc--------------------CC
Confidence 87 677777777654 56799999875 5666664 99999999998443322111 34
Q ss_pred CCceEEEEeeCCC-EEEEEecCceEEEEECCCCcEEE-eeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccc
Q 008844 174 FTPTAACFNKYGD-LVYVGNSKGEILVIDHKSNQIRA-LVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 174 ~~i~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~ 251 (551)
..+.+++|+|++. ++++++.++.|.+||...+.... .+. .|.... ...|++++.++++++.|+.+++|++....
T Consensus 199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-- 274 (466)
T COG2319 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS-- 274 (466)
T ss_pred CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC--
Confidence 4899999999998 55555899999999999777776 343 565554 33899999889999999999999932211
Q ss_pred cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeE
Q 008844 252 GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVK 330 (551)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~ 330 (551)
. .+..+..|...+. .+.|+|++..+++++. ++.+.+|+.. .....
T Consensus 275 -------------------------~-~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 275 -------------------------S-LLRTLSGHSSSVL-----SVAFSPDGKLLASGSS---DGTVRLWDLETGKLLS 320 (466)
T ss_pred -------------------------c-EEEEEecCCccEE-----EEEECCCCCEEEEeeC---CCcEEEEEcCCCceEE
Confidence 1 1222244555555 7799999999998887 7779999888 65555
Q ss_pred EEe--cCCCceEEEEEecCCCeEEEE-cCCCcEEEEecCCCC
Q 008844 331 ILE--GPKEALIDLAWHPVHPIIVSV-SLTGWVYIWAKDYTE 369 (551)
Q Consensus 331 ~l~--~h~~~v~~l~~sp~~~~l~s~-s~dg~i~iW~~~~~~ 369 (551)
... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 554 788889999994332455555 578999999998765
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=7.1e-17 Score=147.00 Aligned_cols=227 Identities=19% Similarity=0.324 Sum_probs=164.3
Q ss_pred cccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCce-------eeEeecccccccEEEEEecCC-CCEEEEEeCCCCE
Q 008844 21 LEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRGI-------AKELRDKECVAAITSVCWSKY-GHRILVSAADKSL 91 (551)
Q Consensus 21 ~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~~-------~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i 91 (551)
.|.++|..++|+| +...||+|+.|.+|.||.+-.+.+ +..|.+| ...|-.+.|+|. .+.|++++.|.+|
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH--~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGH--QRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeec--ceeEEEEeecccchhhHhhccCCceE
Confidence 3889999999999 567899999999999999876543 4455555 999999999995 5789999999999
Q ss_pred EEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 92 TLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
.+||+.+|+.+.++. | |+
T Consensus 157 ~iWnv~tgeali~l~-h---------pd---------------------------------------------------- 174 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-H---------PD---------------------------------------------------- 174 (472)
T ss_pred EEEeccCCceeeecC-C---------CC----------------------------------------------------
Confidence 999999998776654 1 21
Q ss_pred CCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCc-cceEEEEEeeCCCEEEEee---CCCeEEEEeCcC
Q 008844 172 PPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGA-AVIKNIVFSRNGQYLLTNS---NDRTIRIYDNLL 247 (551)
Q Consensus 172 ~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~t~s---~Dg~i~iwd~~~ 247 (551)
.|.+++|+.+|.+|++++.|..|+|||.++++.+..-. .|. ..-..+.|-.+|.++-||- .++.+-+||...
T Consensus 175 ---~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 175 ---MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred ---eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence 78899999999999999999999999999999987764 453 4455667888888555543 478899999110
Q ss_pred CccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCc
Q 008844 248 PLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGY 327 (551)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~ 327 (551)
- .. ...+..+....+ |. -.-|.+|...|+.++. ||+.|+.|.+...
T Consensus 251 l---------------~e-----------P~~~~elDtSnG-vl-----~PFyD~dt~ivYl~GK--GD~~IRYyEit~d 296 (472)
T KOG0303|consen 251 L---------------EE-----------PIALQELDTSNG-VL-----LPFYDPDTSIVYLCGK--GDSSIRYFEITNE 296 (472)
T ss_pred c---------------cC-----------cceeEEeccCCc-eE-----EeeecCCCCEEEEEec--CCcceEEEEecCC
Confidence 0 00 011122222111 21 3356788888776665 4999999999822
Q ss_pred --eeEEEec--CCCceEEEEEecCCC
Q 008844 328 --LVKILEG--PKEALIDLAWHPVHP 349 (551)
Q Consensus 328 --~~~~l~~--h~~~v~~l~~sp~~~ 349 (551)
.+..|.. ...+-..+.|-|..-
T Consensus 297 ~P~~hyln~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 297 PPFVHYLNTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred CceeEEecccccCCcccccccccccc
Confidence 2444432 245667778877653
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=4.6e-16 Score=160.32 Aligned_cols=207 Identities=12% Similarity=0.134 Sum_probs=146.7
Q ss_pred ccceEEEEEEcCCC-CEEEEEeCCCeEEEEeccCC-----ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 22 EHGVMKCIAFNRRG-TLLAAGCSDGSCVIWDFETR-----GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 22 h~~~V~~l~fs~dg-~~latg~~dg~I~iwd~~~~-----~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
|...|..++.++.. .++++|+.||+|++|+...- .....+..+.....+.++...+.+..++.++.||.|++.+
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 77778888887754 99999999999999998531 1112222222368899999999999999999999999999
Q ss_pred cCCC--e-----EEEEEEcCCC--eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 96 VLKG--E-----KITRIVLQQT--PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 96 ~~~~--~-----~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
+... . +......... +..+.-.........++.+...+.+..||++..........
T Consensus 1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~--------------- 1191 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN--------------- 1191 (1431)
T ss_pred ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc---------------
Confidence 8652 1 1111112222 22222111222224788888999999999987653322111
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC---CEEEEe-e-CCCeEE
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG---QYLLTN-S-NDRTIR 241 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g---~~l~t~-s-~Dg~i~ 241 (551)
......|++++.+|.+.++++|+..|.+.+||++-+..+..+..++..+|+.+..+|-. ...+++ + ..+.|.
T Consensus 1192 ---~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 ---QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred ---CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 11112799999999999999999999999999999999888877778899999888743 344444 3 478899
Q ss_pred EEeCc
Q 008844 242 IYDNL 246 (551)
Q Consensus 242 iwd~~ 246 (551)
+|++.
T Consensus 1269 ~wn~~ 1273 (1431)
T KOG1240|consen 1269 TWNME 1273 (1431)
T ss_pred eeecc
Confidence 99943
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.6e-16 Score=142.17 Aligned_cols=292 Identities=14% Similarity=0.149 Sum_probs=204.3
Q ss_pred CCccccccCC---CCc--cceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEe
Q 008844 1 MNAPIIDPLQ---GDF--PEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCW 75 (551)
Q Consensus 1 mnl~lwd~~~---~~~--~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~ 75 (551)
|.++||+... .+. |-.+....|...|.|++|+...++|++|..+++|.+.|+++.+.+..+......+.|+.+..
T Consensus 78 ~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~ 157 (609)
T KOG4227|consen 78 MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQ 157 (609)
T ss_pred ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeeccc
Confidence 6788998652 233 33344444558899999999999999999999999999999998888765444569999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCe----EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccc
Q 008844 76 SKYGHRILVSAADKSLTLWDVLKGE----KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIA 151 (551)
Q Consensus 76 s~~g~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 151 (551)
+|..+.|++.+.++.|.+||.+... ++.....+...+.+.|+|.. +.++++.+..+.+.+||.+......+...
T Consensus 158 ~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~--P~Li~~~~~~~G~~~~D~R~~~~~~~~~~ 235 (609)
T KOG4227|consen 158 HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET--PALILVNSETGGPNVFDRRMQARPVYQRS 235 (609)
T ss_pred CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC--ceeEEeccccCCCCceeeccccchHHhhh
Confidence 9999999999999999999987643 34444445567788999964 67899999999999999988765443322
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE-EEeeeccCc-------cceEEEE
Q 008844 152 VPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGA-------AVIKNIV 223 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~-------~~i~~l~ 223 (551)
...... .....-..+.|+|+|+.|++--....-.+||+.+.++ +..+ .|. ..|.+++
T Consensus 236 ~~~~L~-------------~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~--D~N~~GY~N~~T~KS~~ 300 (609)
T KOG4227|consen 236 MFKGLP-------------QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS--DHNPNGYCNIKTIKSMT 300 (609)
T ss_pred ccccCc-------------ccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec--cCCCCcceeeeeeeeee
Confidence 111000 0001335788999999888776666677888887555 3333 332 3466777
Q ss_pred EeeCCCEEEEeeCCCeEEEEeCcC-CccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC
Q 008844 224 FSRNGQYLLTNSNDRTIRIYDNLL-PLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG 302 (551)
Q Consensus 224 ~s~~g~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~ 302 (551)
|..+ ..+++|+.+=.|++|.+-. +...+...+..-..... ..+.-...+..+++|...++ .+.|+|
T Consensus 301 F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~-------~~~~i~~~~~VLrGHRSv~N-----QVRF~~ 367 (609)
T KOG4227|consen 301 FIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP-------SEIFIEKELTVLRGHRSVPN-----QVRFSQ 367 (609)
T ss_pred eecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCc-------hhheecceeEEEeccccccc-----ceeecC
Confidence 7654 4499999999999998321 11112111111000000 00011345778899998888 889999
Q ss_pred CCCEEEEeeccCCcceEEEEecC
Q 008844 303 DGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 303 dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
...+|++.+- +..++||.-.
T Consensus 368 H~~~l~SSGV---E~~~KlWS~~ 387 (609)
T KOG4227|consen 368 HNNLLVSSGV---ENSFKLWSDH 387 (609)
T ss_pred CcceEeccch---hhheeccccc
Confidence 9888888887 8899999754
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.4e-15 Score=152.41 Aligned_cols=294 Identities=16% Similarity=0.201 Sum_probs=203.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCC---CEEEEEeCCCCEEEEEcCCCeEEEE
Q 008844 28 CIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG---HRILVSAADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 28 ~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g---~~l~s~s~dg~i~vwd~~~~~~~~~ 104 (551)
.-.||+|+++|+..+ +..|.||...|+.++..+..| ..+++.+.+.|.. .++++++.+|+|++||...+..+.+
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~--~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDH--TAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccc--cCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 346899999888765 568999999999999988655 9999999998854 4788999999999999999999999
Q ss_pred EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEE--EcCCCcee-eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 105 IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIV--DLSTGSTS-ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 105 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~--d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
+..+.++..+.+.|.--.....+..+.+..-.+. ........ ...+..... .... ....+. ...++.+
T Consensus 98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~-------~~~d-~~~~~~-~~~~I~~ 168 (792)
T KOG1963|consen 98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS-------AKGD-FLKEHQ-EPKSIVD 168 (792)
T ss_pred EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc-------cchh-hhhhhc-CCccEEE
Confidence 9988887777765432111112212211111111 11111100 000000000 0000 000010 2567888
Q ss_pred eeCCCEEEEEecCceEEEEECCCCcE---EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 182 NKYGDLVYVGNSKGEILVIDHKSNQI---RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 182 s~~g~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
++.|.+.+... +..+.+|...++.. .......|.-.+++.+++|++++++++..||.|.+|.-...
T Consensus 169 ~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---------- 237 (792)
T KOG1963|consen 169 NNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS---------- 237 (792)
T ss_pred cCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc----------
Confidence 88887666655 45688888887542 11222356677999999999999999999999999982210
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKE 337 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~ 337 (551)
.........++=|.+.|+ +++||++|.||++|+. ++.+.+|.+. ++ .+.|.--.+
T Consensus 238 ---------------~~~~~t~t~lHWH~~~V~-----~L~fS~~G~~LlSGG~---E~VLv~Wq~~T~~-kqfLPRLgs 293 (792)
T KOG1963|consen 238 ---------------SDDSETCTLLHWHHDEVN-----SLSFSSDGAYLLSGGR---EGVLVLWQLETGK-KQFLPRLGS 293 (792)
T ss_pred ---------------ccccccceEEEecccccc-----eeEEecCCceEeeccc---ceEEEEEeecCCC-cccccccCC
Confidence 001223455666777887 8999999999999999 9999999999 55 555665678
Q ss_pred ceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 338 ALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
+|..+.++||+.+.+.+..|+.|.+-...+.
T Consensus 294 ~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 294 PILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred eeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 9999999999999999999999999887543
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=1e-16 Score=154.90 Aligned_cols=254 Identities=15% Similarity=0.242 Sum_probs=191.8
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
|.|+|+..|...+.+.. |...|.|++|+.||+.+|+|+.|..|.||...-.. .++. .|...|.|+.|+|-...|
T Consensus 35 lliyD~ndG~llqtLKg--HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~LkY-SH~D~IQCMsFNP~~h~L 108 (1081)
T KOG1538|consen 35 LLVYDTSDGTLLQPLKG--HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILKY-SHNDAIQCMSFNPITHQL 108 (1081)
T ss_pred EEEEeCCCccccccccc--ccceEEEEEEccCCceeccCCCceeEEEecccccc---eeee-ccCCeeeEeecCchHHHh
Confidence 67899999998888887 99999999999999999999999999999765333 3332 469999999999999999
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
++++.. ..-+|.... +.+...+....+.+++|..++. +++.+..+|+|.+-+-.......+.
T Consensus 109 asCsLs-dFglWS~~q-K~V~K~kss~R~~~CsWtnDGq---ylalG~~nGTIsiRNk~gEek~~I~------------- 170 (1081)
T KOG1538|consen 109 ASCSLS-DFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQ---YLALGMFNGTISIRNKNGEEKVKIE------------- 170 (1081)
T ss_pred hhcchh-hccccChhh-hhHHhhhhheeEEEeeecCCCc---EEEEeccCceEEeecCCCCcceEEe-------------
Confidence 999863 467887643 3344445556677888888865 7889999999988754443332221
Q ss_pred CCCCCCCCCCCCCceEEEEeeCC-----CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYG-----DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g-----~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
..++...+|.+++|+|.. ..+++.....++.+|.+..... ..-. .-.-...|+.+.++|.+++.|+.|
T Consensus 171 -----Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I-gk~r-~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 171 -----RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI-GKDR-ALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred -----CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee-cccc-cCCCCchhheeccCCcEEEEccCC
Confidence 122333489999999864 5678888888888888754332 2111 223345688999999999999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
+.+++|. +.+..+-++..+..+|. .++..|++++++.|+. ||
T Consensus 244 k~L~~fT------------------------------R~GvrLGTvg~~D~WIW-----tV~~~PNsQ~v~~GCq---DG 285 (1081)
T KOG1538|consen 244 KQLSLFT------------------------------RDGVRLGTVGEQDSWIW-----TVQAKPNSQYVVVGCQ---DG 285 (1081)
T ss_pred CceEEEe------------------------------ecCeEEeeccccceeEE-----EEEEccCCceEEEEEc---cC
Confidence 9999996 11333445555666676 8899999999999999 99
Q ss_pred eEEEEecC
Q 008844 318 KIYIWDRA 325 (551)
Q Consensus 318 ~I~iwd~~ 325 (551)
+|-.|++-
T Consensus 286 TiACyNl~ 293 (1081)
T KOG1538|consen 286 TIACYNLI 293 (1081)
T ss_pred eeehhhhH
Confidence 99998864
No 190
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=3.4e-15 Score=145.50 Aligned_cols=316 Identities=15% Similarity=0.157 Sum_probs=187.0
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
|.|.|..+.+....+.. ....-..+.|+|||+++++++.||.|.++|+.+++.+.++... ....++++|+||+++
T Consensus 18 v~viD~~t~~~~~~i~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 18 VAVIDGATNKVVARIPT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---GNPRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S---SEEEEEEE--TTTEE
T ss_pred EEEEECCCCeEEEEEcC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC---CCcceEEEcCCCCEE
Confidence 56777777766666654 2223344779999999999999999999999999999999763 557889999999999
Q ss_pred EEEeC-CCCEEEEEcCCCeEEEEEEcCC--------CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccC
Q 008844 83 LVSAA-DKSLTLWDVLKGEKITRIVLQQ--------TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVP 153 (551)
Q Consensus 83 ~s~s~-dg~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 153 (551)
++++. .+.+.++|.++.+.+..+.... .+..+..+|.. +.++++.-..+.+.+.|..............
T Consensus 93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~--~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR--PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS--SEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC--CEEEEEEccCCeEEEEEeccccccceeeecc
Confidence 98865 8999999999999998876542 23344445543 3345555556788888877654322111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE-ecCceEEEEECCCCcEEEeeec---cCccceEEEEEeeCC-
Q 008844 154 DVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG-NSKGEILVIDHKSNQIRALVPV---SGAAVIKNIVFSRNG- 228 (551)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~l~~s~~g- 228 (551)
........|+|++++++++ .....|.++|..+++.+..+.. .|..++..+- +|..
T Consensus 171 -------------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g 230 (369)
T PF02239_consen 171 -------------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFG 230 (369)
T ss_dssp --------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTE
T ss_pred -------------------cccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccccc-CCCcc
Confidence 0156678999999988775 4567999999999988776643 2344444331 2221
Q ss_pred CEEEEeeC-CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEE
Q 008844 229 QYLLTNSN-DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWV 307 (551)
Q Consensus 229 ~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l 307 (551)
...++... ...+-+.. ..+. ........+.++.+......+ -+..+|++++|
T Consensus 231 ~vw~~~~~~~~~~~~ig-~~~v--------------------~v~d~~~wkvv~~I~~~G~gl------Fi~thP~s~~v 283 (369)
T PF02239_consen 231 PVWATSGLGYFAIPLIG-TDPV--------------------SVHDDYAWKVVKTIPTQGGGL------FIKTHPDSRYV 283 (369)
T ss_dssp EEEEEEBSSSSEEEEEE---TT--------------------T-STTTBTSEEEEEE-SSSS--------EE--TT-SEE
T ss_pred eEEeeccccceeccccc-CCcc--------------------ccchhhcCeEEEEEECCCCcc------eeecCCCCccE
Confidence 11222211 11122222 0000 000012234445554443332 56789999999
Q ss_pred EEee-ccCCcceEEEEecC-CceeEEEec-CCCceEEEEEecCCCeEEEEcC--CCcEEEEecCCCCcce
Q 008844 308 IAGS-ASKGEHKIYIWDRA-GYLVKILEG-PKEALIDLAWHPVHPIIVSVSL--TGWVYIWAKDYTENWS 372 (551)
Q Consensus 308 ~~gs-~~~~dg~I~iwd~~-~~~~~~l~~-h~~~v~~l~~sp~~~~l~s~s~--dg~i~iW~~~~~~~~~ 372 (551)
.+.. .+.....|.|+|.. .+.+..+.. ....+..+.|+++|+.+..+.. ++.|.|||..+.+...
T Consensus 284 wvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 284 WVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 9981 11126899999999 776666642 2235999999999996655554 4479999999877544
No 191
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.1e-14 Score=129.55 Aligned_cols=239 Identities=15% Similarity=0.249 Sum_probs=164.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEE-EeC------CCCEEEEEcC
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILV-SAA------DKSLTLWDVL 97 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~s~------dg~i~vwd~~ 97 (551)
...+++|+.|...+++|..+| .+||+.+.-+.......+...-.+.-+-| ..++|+. |+. -..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999998776 89999876433222221211122222223 2345443 333 2479999987
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
...++.++.+..++..+.+.++ -++.-..+.|++|...+.-........... +....
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~------riVvvl~~~I~VytF~~n~k~l~~~et~~N-----------------PkGlC 140 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD------RIVVVLENKIYVYTFPDNPKLLHVIETRSN-----------------PKGLC 140 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC------eEEEEecCeEEEEEcCCChhheeeeecccC-----------------CCceE
Confidence 8899999999999999999986 455667888999998855433332222111 11344
Q ss_pred EEEEeeCCCEEEE-EecCceEEEEECCCCcE--EEeeeccCccceEEEEEeeCCCEEEEeeCCCe-EEEEeCcCCccccc
Q 008844 178 AACFNKYGDLVYV-GNSKGEILVIDHKSNQI--RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRT-IRIYDNLLPLKNGL 253 (551)
Q Consensus 178 ~~~~s~~g~~l~~-g~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~-i~iwd~~~~~~~~~ 253 (551)
+++-+....+||. |..-|.|.|-|+...+. ...+. .|...|.|++++.+|..|||+|..|+ |||||..
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~------- 212 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGTLVATASTKGTLIRIFDTE------- 212 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCccEEEEeccCcEEEEEEEcC-------
Confidence 4444444445554 44579999999987766 23333 89999999999999999999999998 7999922
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
.+..+.. +...+....+.+++|||++.+||+++. .|+|+||.+.
T Consensus 213 ----------------------~g~~l~E---~RRG~d~A~iy~iaFSp~~s~LavsSd---KgTlHiF~l~ 256 (346)
T KOG2111|consen 213 ----------------------DGTLLQE---LRRGVDRADIYCIAFSPNSSWLAVSSD---KGTLHIFSLR 256 (346)
T ss_pred ----------------------CCcEeee---eecCCchheEEEEEeCCCccEEEEEcC---CCeEEEEEee
Confidence 2333333 334444455559999999999999998 8999999887
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=3.8e-16 Score=136.82 Aligned_cols=239 Identities=17% Similarity=0.272 Sum_probs=171.4
Q ss_pred ccccceEEEEEEcCCC-----CEEEEEeCCCeEEEEeccC--Ccee--eEe---ecccccccEEEEEecC-CCCEEEEEe
Q 008844 20 YLEHGVMKCIAFNRRG-----TLLAAGCSDGSCVIWDFET--RGIA--KEL---RDKECVAAITSVCWSK-YGHRILVSA 86 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg-----~~latg~~dg~I~iwd~~~--~~~~--~~~---~~~~h~~~V~~l~~s~-~g~~l~s~s 86 (551)
|.|.-+++.+.|.|+. .+|||.+ ..+|+|.+.. .+.. ..+ ....+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 6688899999999975 4677654 4799999873 2211 111 1223578999999987 668899999
Q ss_pred CCCCEEEEEcCCCeE---EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCC
Q 008844 87 ADKSLTLWDVLKGEK---ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSS 163 (551)
Q Consensus 87 ~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 163 (551)
-|-+..|||+++|.. ...+..
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIA-------------------------------------------------------- 194 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIA-------------------------------------------------------- 194 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEe--------------------------------------------------------
Confidence 999999999998722 111211
Q ss_pred CCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeee-ccC-ccceEEEEEeeC-CCEEEEeeCC-C
Q 008844 164 RNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVP-VSG-AAVIKNIVFSRN-GQYLLTNSND-R 238 (551)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~-~~~i~~l~~s~~-g~~l~t~s~D-g 238 (551)
|...|..++|...+ ..|++.+.||.|++||++..+.-..+. .+. ..+...++|++. -++|||-..| .
T Consensus 195 --------HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 195 --------HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred --------cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 12267777887755 678899999999999999876633332 122 567888999875 4678876665 5
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcc
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEH 317 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg 317 (551)
.|.|.|++.| ...+..+++|+..|+ .++|.| ....|++++. |.
T Consensus 267 ~V~iLDiR~P----------------------------~tpva~L~~H~a~VN-----gIaWaPhS~~hictaGD---D~ 310 (364)
T KOG0290|consen 267 KVVILDIRVP----------------------------CTPVARLRNHQASVN-----GIAWAPHSSSHICTAGD---DC 310 (364)
T ss_pred eEEEEEecCC----------------------------CcceehhhcCccccc-----ceEecCCCCceeeecCC---cc
Confidence 6899997666 455788999999999 889998 4567888888 99
Q ss_pred eEEEEecC--Cc-----eeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEE
Q 008844 318 KIYIWDRA--GY-----LVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYI 362 (551)
Q Consensus 318 ~I~iwd~~--~~-----~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~i 362 (551)
.+.|||+. .. ++..+. ..+.|+.+.|++..+ +|+.+. +..+.|
T Consensus 311 qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 311 QALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred eEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 99999998 22 222222 456899999997655 777665 444444
No 193
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.73 E-value=2.3e-16 Score=140.48 Aligned_cols=262 Identities=14% Similarity=0.174 Sum_probs=180.7
Q ss_pred ccceEEEEEEcCC----CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC-CCEEEEEeCCCCEEEEEc
Q 008844 22 EHGVMKCIAFNRR----GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY-GHRILVSAADKSLTLWDV 96 (551)
Q Consensus 22 h~~~V~~l~fs~d----g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~vwd~ 96 (551)
|......++|+-+ ..+||+|+.-|.|+|.|+.++++...+.+| ...|+.|.|.|+ .++|+++|.|.+|++|++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh--G~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH--GGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc--CccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 3445566677654 348999999999999999999999999887 899999999996 478999999999999999
Q ss_pred CCCeEEEEEEcC----CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceee---eccccCCCCCC-CCCCCCCCC-
Q 008844 97 LKGEKITRIVLQ----QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSI---LPIAVPDVANG-IAPSSRNKY- 167 (551)
Q Consensus 97 ~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~- 167 (551)
++..++..+.+- ..+.++.|++++. .+++++.|.++++|++...+... ......+..+. ..+.....+
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 999999988643 3488999999876 89999999999999998543211 11111111111 111111111
Q ss_pred ---CCCCCCCCceEEEEeeCCCEEEEEecCceEEEEEC-CCCcE-------------EEeeeccCccceEEEEE--eeCC
Q 008844 168 ---SDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDH-KSNQI-------------RALVPVSGAAVIKNIVF--SRNG 228 (551)
Q Consensus 168 ---~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~-~~~~~-------------~~~~~~~~~~~i~~l~~--s~~g 228 (551)
....|...|.|+.|- |+++++=+-++.|..|.. +-.+. +..+. .....|.-|.| .|-+
T Consensus 243 ~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred cccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHH
Confidence 223455566677664 568888888999999987 21111 11221 12344555544 5668
Q ss_pred CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEE
Q 008844 229 QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVI 308 (551)
Q Consensus 229 ~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~ 308 (551)
++||.|...|.|.+||+.... .. ....+...+....+...+||.||.+|+
T Consensus 320 ~~la~gnq~g~v~vwdL~~~e---------------------------p~---~~ttl~~s~~~~tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNE---------------------------PP---KCTTLTHSKSGSTVRQTSFSRDGSILV 369 (385)
T ss_pred HHHhhccCCCcEEEEECCCCC---------------------------Cc---cCceEEeccccceeeeeeecccCcEEE
Confidence 899999999999999932111 10 111122222233344789999999999
Q ss_pred EeeccCCcceEEEEec
Q 008844 309 AGSASKGEHKIYIWDR 324 (551)
Q Consensus 309 ~gs~~~~dg~I~iwd~ 324 (551)
..+. +++|.-||.
T Consensus 370 ~vcd---d~~Vwrwdr 382 (385)
T KOG1034|consen 370 LVCD---DGTVWRWDR 382 (385)
T ss_pred EEeC---CCcEEEEEe
Confidence 9999 999999985
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=6.9e-16 Score=141.28 Aligned_cols=260 Identities=19% Similarity=0.207 Sum_probs=167.0
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEecc--------C--------CceeeEeecccccccEEEEEecCCCCEEEEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFE--------T--------RGIAKELRDKECVAAITSVCWSKYGHRILVS 85 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~--------~--------~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~ 85 (551)
|+..|+++.|+|+|.+||+|+.+|.|.+|-.. + ....+.+.+ |...|..++|+|++.+++++
T Consensus 64 H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~--h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 64 HTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG--HRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred CcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc--cccchhhhhccCCCceeeee
Confidence 77999999999999999999999999999765 2 123344444 58999999999999999999
Q ss_pred eCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeecc---ccCCCCCCCCC
Q 008844 86 AADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPI---AVPDVANGIAP 161 (551)
Q Consensus 86 s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~ 161 (551)
+.|.++++||+..|..+..+..|.. +..++|.|.+. ++++-+.+...+.+.+.......... ...........
T Consensus 142 s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q---yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~ 218 (434)
T KOG1009|consen 142 SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ---YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREG 218 (434)
T ss_pred eccceEEEEEeccceeEeeccccccccceeecchhhh---hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCc
Confidence 9999999999999999988877754 77888988754 56666777767776665543221111 00000111111
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEEEEEec----Cc-----eEEEEECCCC-cEEEeeeccCccceEEEEEee-----
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS----KG-----EILVIDHKSN-QIRALVPVSGAAVIKNIVFSR----- 226 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~----dg-----~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~s~----- 226 (551)
.....+.....+.-...++|+|+|.++++... .| ..++|+-..- ++...++ ....++..+.|+|
T Consensus 219 ~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 219 KSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYYEL 297 (434)
T ss_pred ceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC-CCCcceEEEEeeeeEEEe
Confidence 11112222333335667899999999887542 22 2345543321 2233332 2234444555543
Q ss_pred -------------CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee-eecccccccce
Q 008844 227 -------------NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA-LFREFQDSITK 292 (551)
Q Consensus 227 -------------~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 292 (551)
-+-.+|++ ....|.|||... ...+. .-.-|-..++
T Consensus 298 rp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~-----------------------------~~P~~~v~nihy~~iT- 346 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQT-----------------------------LEPLAVVDNIHYSAIT- 346 (434)
T ss_pred ccccccccccccccceEEEEe-ecceEEEecccc-----------------------------ccceEEEeeeeeeeec-
Confidence 11223444 456789998211 11111 1122334444
Q ss_pred eeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 293 MHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 293 ~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
.++|++||.+|+..+. ||...+..+.
T Consensus 347 ----Diaws~dg~~l~vSS~---DGyCS~vtfe 372 (434)
T KOG1009|consen 347 ----DIAWSDDGSVLLVSST---DGFCSLVTFE 372 (434)
T ss_pred ----ceeecCCCcEEEEecc---CCceEEEEEc
Confidence 8999999999999999 8888877777
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=4.2e-16 Score=157.06 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=155.0
Q ss_pred CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC---CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCC
Q 008844 44 DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD---KSLTLWDVLKGEKITRIVLQQTPLQARLHPGS 120 (551)
Q Consensus 44 dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~ 120 (551)
+..|.|||..... .+.+..+ ...+.+++|+|+|+.|+.++.+ ..|.+||+.++................|+|++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~--~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRS--SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC-ceEeccC--CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC
Confidence 4689999987554 4555544 6789999999999999988753 36999999888654333333334568999987
Q ss_pred CCCcEEEEeeCCCCcEEE--EcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceE
Q 008844 121 STPSLCLACPLSSAPMIV--DLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEI 197 (551)
Q Consensus 121 ~~~~~~~~~~~~~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i 197 (551)
. .++++...++.+.|| |+.++....+.. +...+...+|+|+|+.|+.++ .+|..
T Consensus 260 ~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~---------------------~~~~~~~~~wSpDG~~i~f~s~~~g~~ 316 (429)
T PRK01742 260 S--RLAFASSKDGVLNIYVMGANGGTPSQLTS---------------------GAGNNTEPSWSPDGQSILFTSDRSGSP 316 (429)
T ss_pred C--EEEEEEecCCcEEEEEEECCCCCeEeecc---------------------CCCCcCCEEECCCCCEEEEEECCCCCc
Confidence 5 234444567765555 665555432211 111567889999999777655 56777
Q ss_pred EEEECCC--CcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeec
Q 008844 198 LVIDHKS--NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMV 275 (551)
Q Consensus 198 ~i~d~~~--~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (551)
.||++.. +.. ..+ .+.. .++.|+|+|++|++.+.++ +.+||+..
T Consensus 317 ~I~~~~~~~~~~-~~l--~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~---------------------------- 362 (429)
T PRK01742 317 QVYRMSASGGGA-SLV--GGRG--YSAQISADGKTLVMINGDN-VVKQDLTS---------------------------- 362 (429)
T ss_pred eEEEEECCCCCe-EEe--cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC----------------------------
Confidence 7776643 322 222 2333 4578999999998887765 44588211
Q ss_pred cceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEec---CCceeEEEecCCCceEEEEEecC
Q 008844 276 GSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDR---AGYLVKILEGPKEALIDLAWHPV 347 (551)
Q Consensus 276 ~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~---~~~~~~~l~~h~~~v~~l~~sp~ 347 (551)
+........+ ... .+.|+|+|++|++++. ++.+.+|.+ .|..+..+.+|.+.+..++|+|-
T Consensus 363 -g~~~~lt~~~--~~~-----~~~~sPdG~~i~~~s~---~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 363 -GSTEVLSSTF--LDE-----SPSISPNGIMIIYSST---QGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -CCeEEecCCC--CCC-----CceECCCCCEEEEEEc---CCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 1111111111 112 6789999999999998 565665554 48888999888888999999985
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=4.9e-16 Score=138.04 Aligned_cols=252 Identities=17% Similarity=0.219 Sum_probs=178.5
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC-C
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG---IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVL-K 98 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~---~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~-~ 98 (551)
-.+|+|.+|++|++.+|++.....|.||...... ..+++..| ...|++|+|+|..+.|++|+.|..-.||... .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H--d~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH--DKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh--CcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3789999999999999999999999999987655 55666554 9999999999999999999999999999884 3
Q ss_pred CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 99 GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
++-..++.. ++ +....++
T Consensus 88 ~~WkptlvL------lR--------------------------------------------------------iNrAAt~ 105 (361)
T KOG1523|consen 88 GTWKPTLVL------LR--------------------------------------------------------INRAATC 105 (361)
T ss_pred CeeccceeE------EE--------------------------------------------------------eccceee
Confidence 332222110 00 0117889
Q ss_pred EEEeeCCCEEEEEecCceEEEEECCCCcEE---EeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 179 ACFNKYGDLVYVGNSKGEILVIDHKSNQIR---ALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
+.|+|.++.|++|+.-..|.||-++...-- ..+..++...|+++.|+|++-+|++|+.|+..|||......
T Consensus 106 V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~------ 179 (361)
T KOG1523|consen 106 VKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG------ 179 (361)
T ss_pred EeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeec------
Confidence 999999999999999999999988765542 22233667889999999999999999999999999833211
Q ss_pred hhhhhcc-CCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-C-ceeEEE
Q 008844 256 LVDIEKG-IAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-G-YLVKIL 332 (551)
Q Consensus 256 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~-~~~~~l 332 (551)
+... ...+.+ ..+.. +..+..+....+.+. .+.|+|+|..|+-.+. |..+.+-|.. . +.+..+
T Consensus 180 ---Vdekpap~pWg-sk~PF--G~lm~E~~~~ggwvh-----~v~fs~sG~~lawv~H---ds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 180 ---VDEKPAPTPWG-SKMPF--GQLMSEASSSGGWVH-----GVLFSPSGNRLAWVGH---DSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred ---cccCCCCCCCc-cCCcH--HHHHHhhccCCCcee-----eeEeCCCCCEeeEecC---CCceEEeecCCCchhccch
Confidence 1000 000000 00000 111222222334444 8899999999999999 9999999988 2 245555
Q ss_pred ecCCCceEEEEEecCCCeEEEEcCCCc
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSLTGW 359 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~dg~ 359 (551)
....-+..++.|-.+. .++.++.|..
T Consensus 246 ~~~~lP~ls~~~ise~-~vv~ag~~c~ 271 (361)
T KOG1523|consen 246 ATAQLPLLSVSWISEN-SVVAAGYDCG 271 (361)
T ss_pred hhccCCceeeEeecCC-ceeecCCCCC
Confidence 5445788888886554 4555555543
No 197
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=4.3e-15 Score=149.38 Aligned_cols=239 Identities=13% Similarity=0.169 Sum_probs=162.1
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC---CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCC
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA---DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSS 121 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~ 121 (551)
..|.+||...... +.+..+ ...+.+.+|+|||+.|+..+. +..|.+|++.+|+...............|+|++.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~--~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRS--PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecC--CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence 3699999875543 334333 678999999999999887643 4579999998886554444444455689999875
Q ss_pred CCcEEEEeeCCC--CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-c--e
Q 008844 122 TPSLCLACPLSS--APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-G--E 196 (551)
Q Consensus 122 ~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-g--~ 196 (551)
. ++++...++ .|++||+.++....+... ...+....|+|+|+.|+..+.+ | .
T Consensus 256 ~--La~~~~~~g~~~I~~~d~~tg~~~~lt~~---------------------~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 256 K--LAFALSKTGSLNLYVMDLASGQIRQVTDG---------------------RSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred E--EEEEEcCCCCcEEEEEECCCCCEEEccCC---------------------CCCcCceEECCCCCEEEEEeCCCCCce
Confidence 2 444444444 488889988765443211 1145678999999988777654 3 5
Q ss_pred EEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC---CeEEEEeCcCCccccchhhhhhhccCCCCCcceeee
Q 008844 197 ILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND---RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273 (551)
Q Consensus 197 i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (551)
|+++|+.++...... ..........|+|+|++|+..+.+ ..|.+||+..
T Consensus 313 Iy~~d~~~g~~~~lt--~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-------------------------- 364 (429)
T PRK03629 313 VYKVNINGGAPQRIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-------------------------- 364 (429)
T ss_pred EEEEECCCCCeEEee--cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC--------------------------
Confidence 666688777654433 333445678999999998876543 3477777211
Q ss_pred eccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecC
Q 008844 274 MVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPV 347 (551)
Q Consensus 274 ~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~ 347 (551)
+. ...+... .... .+.|+|||++|+.++.+++...++++++.|.....+.+|.+.+...+|+|-
T Consensus 365 ---g~-~~~Lt~~-~~~~-----~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 365 ---GG-VQVLTDT-FLDE-----TPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ---CC-eEEeCCC-CCCC-----CceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 11 1112111 1111 578999999999999855445688999988778888888889999999883
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.8e-16 Score=138.75 Aligned_cols=271 Identities=11% Similarity=0.130 Sum_probs=185.4
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcC--CCCEEEEEeCCCeEEEEeccCCceeeEeeccccc-ccEEEEEecCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNR--RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECV-AAITSVCWSKYG 79 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~--dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~-~~V~~l~~s~~g 79 (551)
++|||+.++++.+.+.. +...++.++|.. .+..+.+|+.||+|++||+.+......+....|. .+..+++....+
T Consensus 52 v~lyd~~tg~~l~~fk~--~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 52 VRLYDKGTGQLLEEFKG--PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK 129 (376)
T ss_pred EEEEeccchhhhheecC--CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence 68999999988888877 667777888876 4678999999999999999987665555444334 566777777677
Q ss_pred CEEEEEeC----CCCEEEEEcCCCeE-EEEEE--cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeecccc
Q 008844 80 HRILVSAA----DKSLTLWDVLKGEK-ITRIV--LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAV 152 (551)
Q Consensus 80 ~~l~s~s~----dg~i~vwd~~~~~~-~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 152 (551)
+.+++|.. +-.|.+||++..+. +..+. .+..++.++|+|. ++.++++++.||-+.+||+......-..+..
T Consensus 130 ~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~--~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v 207 (376)
T KOG1188|consen 130 NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS--DPNLLLSGSVDGLVNLFDTKKDNEEDALLHV 207 (376)
T ss_pred CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC--CCCeEEeecccceEEeeecCCCcchhhHHHh
Confidence 77777754 67899999998766 55442 3456999999995 4779999999999999999876422111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccC-----------ccceE
Q 008844 153 PDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSG-----------AAVIK 220 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~i~ 220 (551)
-.+...|.++.|...+ +.|.+-+..++..+|+++.+.....+..+. ...+-
T Consensus 208 -----------------iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 208 -----------------INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred -----------------hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 1122378999999888 568888999999999999887654443211 11121
Q ss_pred EEEEeeCCCEEEEeeC-CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceeeeeee
Q 008844 221 NIVFSRNGQYLLTNSN-DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMHWKAP 298 (551)
Q Consensus 221 ~l~~s~~g~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 298 (551)
......+...+++++. -+...++-+..... ......+..+.+ |...|. ++
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s-----------------------~~~~~~~a~l~g~~~eiVR-----~i 322 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSS-----------------------GSLLTEPAILQGGHEEIVR-----DI 322 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEeeeccc-----------------------ccccCccccccCCcHHHHH-----HH
Confidence 2211223444444444 56666664211000 111223444555 555555 67
Q ss_pred EEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 299 CFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 299 ~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
.|...+.++.+|+. ||.|.+|...
T Consensus 323 ~~~~~~~~l~TGGE---DG~l~~Wk~~ 346 (376)
T KOG1188|consen 323 LFDVKNDVLYTGGE---DGLLQAWKVE 346 (376)
T ss_pred hhhcccceeeccCC---CceEEEEecC
Confidence 78888999999999 9999999854
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.6e-15 Score=152.91 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=140.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD---GSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
.|.|||..... +..+.. |...+.+.+|||||+.||.++.+ ..|++||+.++........ .+...+++|+||
T Consensus 185 ~i~i~d~dg~~-~~~lt~--~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~---~g~~~~~~wSPD 258 (429)
T PRK01742 185 EVRVADYDGFN-QFIVNR--SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF---RGHNGAPAFSPD 258 (429)
T ss_pred EEEEECCCCCC-ceEecc--CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC---CCccCceeECCC
Confidence 35677775443 444443 66789999999999999987653 4699999988764332222 223446899999
Q ss_pred CCEEEEEe-CCCCEEEE--EcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCC
Q 008844 79 GHRILVSA-ADKSLTLW--DVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDV 155 (551)
Q Consensus 79 g~~l~s~s-~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 155 (551)
|+.|+.++ .+|.+.|| |+.++................|+|++.. ++++...++.+.+|++.........+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~--i~f~s~~~g~~~I~~~~~~~~~~~~l~---- 332 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQS--ILFTSDRSGSPQVYRMSASGGGASLVG---- 332 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCeEEec----
Confidence 99888765 57776655 6666654433333334667899998752 445555678888887654321111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee
Q 008844 156 ANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
+. . .+..|+|+|++|++++.++ +.+||+.++....... . .....+.|+|+|++|+.++
T Consensus 333 ----------------~~-~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~--~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 333 ----------------GR-G-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-T--FLDESPSISPNGIMIIYSS 390 (429)
T ss_pred ----------------CC-C-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-C--CCCCCceECCCCCEEEEEE
Confidence 00 1 3467999999998887754 6669999887654332 2 1235678999999999999
Q ss_pred CCCeEEEEe
Q 008844 236 NDRTIRIYD 244 (551)
Q Consensus 236 ~Dg~i~iwd 244 (551)
.++.+.+|.
T Consensus 391 ~~g~~~~l~ 399 (429)
T PRK01742 391 TQGLGKVLQ 399 (429)
T ss_pred cCCCceEEE
Confidence 999988887
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=1.3e-15 Score=144.11 Aligned_cols=244 Identities=20% Similarity=0.275 Sum_probs=158.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCce----eeEeecccccccEEEEEe-----cCCCCEEEEEeCCCCEEEEEc
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI----AKELRDKECVAAITSVCW-----SKYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~----~~~~~~~~h~~~V~~l~~-----s~~g~~l~s~s~dg~i~vwd~ 96 (551)
+....++-.|++|+..- ...+.+|+...+.. +...... ....+|-.| .+.+--|+.+-.-|.|.+.|.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~--gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYK--GTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhccc--CCCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 44445555677777653 34688998874321 1111111 223334444 345667888888889998887
Q ss_pred CCCeEEEEE-----EcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRI-----VLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 97 ~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
......+.+ .....+.++.|.|.+. ..+++...+|.+++||.......
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~--~~Fl~a~~sGnlyly~~~~~~~~------------------------- 255 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSD--SLFLVAHASGNLYLYDKEIVCGA------------------------- 255 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCC--ceEEEEEecCceEEeeccccccC-------------------------
Confidence 653222211 1225688999999764 48899999999999987221100
Q ss_pred CCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccc
Q 008844 172 PPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 172 ~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~ 251 (551)
...+....+++..+.+....+. .+..++..+. ...+.|..++|+|||++||+.+.||.+||||...
T Consensus 256 ---t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~-~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt---- 321 (636)
T KOG2394|consen 256 ---TAPSYQALKDGDQFAILTSKSK------KTRNPVARWH-IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT---- 321 (636)
T ss_pred ---CCCcccccCCCCeeEEeeeecc------ccCCccceeE-eccccccceeEcCCCceEEEEecCceEEEeeccH----
Confidence 1111222344555544332211 1223444443 3456899999999999999999999999999211
Q ss_pred cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeE
Q 008844 252 GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVK 330 (551)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~ 330 (551)
...+..++.+-+... +++|||||+||++|+. |-.|.||.+. ++.+.
T Consensus 322 -------------------------~eLlg~mkSYFGGLL-----CvcWSPDGKyIvtGGE---DDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 322 -------------------------QELLGVMKSYFGGLL-----CVCWSPDGKYIVTGGE---DDLVTVWSFEERRVVA 368 (636)
T ss_pred -------------------------HHHHHHHHhhccceE-----EEEEcCCccEEEecCC---cceEEEEEeccceEEE
Confidence 222333333334444 9999999999999999 8999999999 99999
Q ss_pred EEecCCCceEEEEEec
Q 008844 331 ILEGPKEALIDLAWHP 346 (551)
Q Consensus 331 ~l~~h~~~v~~l~~sp 346 (551)
.-+||+.+|..|+|.|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 9999999999999973
No 201
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.6e-16 Score=151.28 Aligned_cols=223 Identities=17% Similarity=0.251 Sum_probs=160.2
Q ss_pred ccccccC------CCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC----------ceeeEeecccc
Q 008844 3 APIIDPL------QGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR----------GIAKELRDKEC 66 (551)
Q Consensus 3 l~lwd~~------~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~----------~~~~~~~~~~h 66 (551)
|.+|+.. ...+..++....|.++|.|+++.+++..+++|+.||+|+.|++... ....++.| |
T Consensus 318 lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G--h 395 (577)
T KOG0642|consen 318 LKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG--H 395 (577)
T ss_pred hhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec--c
Confidence 4678772 3344556666679999999999999999999999999999965421 23345555 4
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC---CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ---QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
...|+.+++|+....|++++.||++++|+...... .++... .-+..+.+-. ..+...++...-+.-.++++...
T Consensus 396 tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~s--s~~a~~~~s~~~~~~~~~~~ev~ 472 (577)
T KOG0642|consen 396 TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTS--SRPAHSLASFRFGYTSIDDMEVV 472 (577)
T ss_pred ccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeecc--chhHhhhhhcccccccchhhhhh
Confidence 99999999999988999999999999999866655 333222 2223333222 22233444444444445555544
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIV 223 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 223 (551)
....+.-...... ......+.-+.++|.+.+.+++..++.|+++|..++.++.... .|...+++++
T Consensus 473 s~~~~~~s~~~~~-------------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~~~svtsla 538 (577)
T KOG0642|consen 473 SDLLIFESSASPG-------------PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-AHKDSVTSLA 538 (577)
T ss_pred hheeeccccCCCc-------------ccccCccceEEecCCCCeeEecccCCceecccccccccchhee-eccceeccee
Confidence 4333221111100 0011167788899999999999999999999999999977765 8999999999
Q ss_pred EeeCCCEEEEeeCCCeEEEEe
Q 008844 224 FSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 224 ~s~~g~~l~t~s~Dg~i~iwd 244 (551)
+.|+|-+|++++.|+.+++|.
T Consensus 539 i~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ecCCCceEEeecCCceeehhh
Confidence 999999999999999999998
No 202
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=8.6e-16 Score=134.48 Aligned_cols=230 Identities=18% Similarity=0.292 Sum_probs=160.5
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce-eeEeec---ccccccEEEEEecC--CCCEEEEEeCCCCEEEEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI-AKELRD---KECVAAITSVCWSK--YGHRILVSAADKSLTLWD 95 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~-~~~~~~---~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~vwd 95 (551)
+.+.|.|+.|.|++..||+-. |..|.+|++..+.. +..+.. .+|....++-+|+| +|+.+++.+ |++++.||
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D 199 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWD 199 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEE
Confidence 447899999999999998765 78999999987654 333322 12466788889998 788887775 89999999
Q ss_pred cCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
+++..+...+.-. |...
T Consensus 200 ~RT~~~~~sI~dA---------------------------------------------------------------Hgq~ 216 (370)
T KOG1007|consen 200 LRTMKKNNSIEDA---------------------------------------------------------------HGQR 216 (370)
T ss_pred ccchhhhcchhhh---------------------------------------------------------------hcce
Confidence 9987665554322 2226
Q ss_pred ceEEEEeeCC-CEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCcccc
Q 008844 176 PTAACFNKYG-DLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 176 i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
+..+.|+|+. .+|++++.||.|+|||.+..+. +..+. +|...|.++.|+|. .++|++++.|..|.+|-...-....
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 7778888877 5678889999999999987655 66665 89999999999995 5688999999999999722211111
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEE-EEeeccCCcceEEEEecC
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWV-IAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l-~~gs~~~~dg~I~iwd~~ 325 (551)
......-..........++.+......+..+..|.+.|. +++||.-.-++ |+-++ ||.+.|=.+.
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY-----~~aWSsadPWiFASLSY---DGRviIs~V~ 361 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY-----ALAWSSADPWIFASLSY---DGRVIISSVP 361 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceE-----EEeeccCCCeeEEEecc---CceEEeecCC
Confidence 111111111111111222333333455778899999999 88888766665 55566 8888876665
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.6e-14 Score=131.06 Aligned_cols=236 Identities=13% Similarity=0.144 Sum_probs=166.7
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE-EEEcCCCeeEEEEecCCCCCcEEEEeeCC--CCcEEEEcCCC
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT-RIVLQQTPLQARLHPGSSTPSLCLACPLS--SAPMIVDLSTG 143 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~i~i~d~~~~ 143 (551)
...+..+.|..+...|..|+.|| .++|......... .......+....|+.. +++..+.+ ..++++++..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-----LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-----LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-----eeEEEecCCCceEEEEEcccC
Confidence 45677788999888888888887 5777765433211 1111122333344432 33333333 34778888776
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc--CccceEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS--GAAVIKN 221 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~ 221 (551)
....-.... ..|.++.++.+ .|++.-.+ .|+|||+++.+++.++... +...+.+
T Consensus 79 ~~ICe~~fp---------------------t~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~A 134 (391)
T KOG2110|consen 79 TTICEIFFP---------------------TSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCA 134 (391)
T ss_pred ceEEEEecC---------------------CceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEe
Confidence 654332111 16777777654 56555544 4999999999998887543 4555666
Q ss_pred EEEeeCCCEEEEee--CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeE
Q 008844 222 IVFSRNGQYLLTNS--NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 222 l~~s~~g~~l~t~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 299 (551)
+++++.+.+|+.-+ ..|.|.|||+ ...+.+..+..|.+.+. +++
T Consensus 135 lS~n~~n~ylAyp~s~t~GdV~l~d~-----------------------------~nl~~v~~I~aH~~~lA-----ala 180 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGSTTSGDVVLFDT-----------------------------INLQPVNTINAHKGPLA-----ALA 180 (391)
T ss_pred eccCCCCceEEecCCCCCceEEEEEc-----------------------------ccceeeeEEEecCCcee-----EEE
Confidence 77776777888643 3689999992 22455777889999998 999
Q ss_pred EcCCCCEEEEeeccCCcc-eEEEEecC-CceeEEEecCC--CceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 300 FSGDGEWVIAGSASKGEH-KIYIWDRA-GYLVKILEGPK--EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 300 ~s~dg~~l~~gs~~~~dg-~I~iwd~~-~~~~~~l~~h~--~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
|+++|.+||+++. .| .||||.+. |+.+..++-.. ..|.+++|+|++++|++.|..++|+||.++...
T Consensus 181 fs~~G~llATASe---KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 181 FSPDGTLLATASE---KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ECCCCCEEEEecc---CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9999999999998 44 58999999 99999887533 458999999999999999999999999998643
No 204
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.4e-14 Score=146.46 Aligned_cols=238 Identities=14% Similarity=0.182 Sum_probs=160.8
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC---CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCC
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA---DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSS 121 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~ 121 (551)
..|.+||.... ..+.+..+ ...+.+..|+|+|+.|+.++. ...|.+||+.++................|+|++.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~--~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRS--AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecC--CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC
Confidence 46999998644 34455444 678999999999999998874 3469999998887654433333445678999875
Q ss_pred CCcEEEEeeCCC--CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-Cc--e
Q 008844 122 TPSLCLACPLSS--APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-KG--E 196 (551)
Q Consensus 122 ~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-dg--~ 196 (551)
. ++++.+.++ .|++|++.++....+... .......+|+|+|+.|+.++. .| .
T Consensus 261 ~--l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~---------------------~~~~~~~~~spDG~~l~f~sd~~g~~~ 317 (433)
T PRK04922 261 R--LALTLSRDGNPEIYVMDLGSRQLTRLTNH---------------------FGIDTEPTWAPDGKSIYFTSDRGGRPQ 317 (433)
T ss_pred E--EEEEEeCCCCceEEEEECCCCCeEECccC---------------------CCCccceEECCCCCEEEEEECCCCCce
Confidence 3 444555554 588899988765432110 013456799999998887764 34 4
Q ss_pred EEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC---eEEEEeCcCCccccchhhhhhhccCCCCCcceeee
Q 008844 197 ILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR---TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273 (551)
Q Consensus 197 i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (551)
|+++++.+++..... .+......++|+|+|++|+..+.++ .|.+|++..
T Consensus 318 iy~~dl~~g~~~~lt--~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-------------------------- 369 (433)
T PRK04922 318 IYRVAASGGSAERLT--FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-------------------------- 369 (433)
T ss_pred EEEEECCCCCeEEee--cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC--------------------------
Confidence 777888777654433 2334455789999999988765433 588888211
Q ss_pred eccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEec
Q 008844 274 MVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHP 346 (551)
Q Consensus 274 ~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp 346 (551)
+. ...+... .... .+.|+|||++|+..+...+.+.|+++++.|.....+..+.+.+...+|+|
T Consensus 370 ---g~-~~~Lt~~-~~~~-----~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 370 ---GS-VRTLTPG-SLDE-----SPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---CC-eEECCCC-CCCC-----CceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 11 1122211 1122 56899999999888775545679999998766777776677788889987
No 205
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=7.2e-16 Score=148.34 Aligned_cols=169 Identities=18% Similarity=0.309 Sum_probs=131.2
Q ss_pred CCCccc-eeecccccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCc-------eeeEeecccccccEEEEEecC-CC
Q 008844 10 QGDFPE-VIEEYLEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRG-------IAKELRDKECVAAITSVCWSK-YG 79 (551)
Q Consensus 10 ~~~~~~-~l~~~~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~-------~~~~~~~~~h~~~V~~l~~s~-~g 79 (551)
-|++|. .+..+.....|+.+.|.| |...||+++.||.|+||.+..+. ....+..| ...|++|.|+| -.
T Consensus 613 PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h--~eKI~slRfHPLAa 690 (1012)
T KOG1445|consen 613 PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH--GEKITSLRFHPLAA 690 (1012)
T ss_pred CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc--cceEEEEEecchhh
Confidence 344554 233344557799999999 67899999999999999997654 33455555 89999999999 46
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 80 HRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
..|+++++|.+|++||+.++.....+.+|..
T Consensus 691 dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd------------------------------------------------- 721 (1012)
T KOG1445|consen 691 DVLAVASYDSTIELWDLANAKLYSRLVGHTD------------------------------------------------- 721 (1012)
T ss_pred hHhhhhhccceeeeeehhhhhhhheeccCcC-------------------------------------------------
Confidence 7899999999999999999887777766553
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEEEEeeCCCEEEEeeCC-
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRNGQYLLTNSND- 237 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D- 237 (551)
.|..++|+|+|+.+++.+.||+|++|..+++.. +..-...-...--.|.|.-+|+++++.+.|
T Consensus 722 ---------------qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 722 ---------------QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ---------------ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 888999999999999999999999999998765 332221222334568898999998888765
Q ss_pred ---CeEEEEe
Q 008844 238 ---RTIRIYD 244 (551)
Q Consensus 238 ---g~i~iwd 244 (551)
+.|.+||
T Consensus 787 ~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 787 SSERQVQMYD 796 (1012)
T ss_pred cchhhhhhhh
Confidence 4577887
No 206
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.7e-14 Score=142.81 Aligned_cols=239 Identities=14% Similarity=0.184 Sum_probs=155.3
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC---CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCC
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD---KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSS 121 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~ 121 (551)
..|.+||.. +...+.+..+ ...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~--~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSS--PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccC--CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 467777774 4444445444 6789999999999999887653 359999999887655443444556789999875
Q ss_pred CCcEEEEeeCCCCcEEEEc--CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-CceEE
Q 008844 122 TPSLCLACPLSSAPMIVDL--STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-KGEIL 198 (551)
Q Consensus 122 ~~~~~~~~~~~~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-dg~i~ 198 (551)
. ++++.+.++...+|.+ ..+....+.. +........|+|+|+.|+..+. .|...
T Consensus 253 ~--la~~~~~~g~~~Iy~~d~~~~~~~~lt~---------------------~~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 253 T--LAVALSRDGNSQIYTVNADGSGLRRLTQ---------------------SSGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred E--EEEEEccCCCceEEEEECCCCCcEECCC---------------------CCCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 2 4556677777666654 4443222110 0113456789999998876654 35545
Q ss_pred EE--ECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC---eEEEEeCcCCccccchhhhhhhccCCCCCcceeee
Q 008844 199 VI--DHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR---TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273 (551)
Q Consensus 199 i~--d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (551)
|| ++.++...... .........+|+|+|++|+..+.++ .|.+||+..
T Consensus 310 Iy~~~~~~g~~~~lt--~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-------------------------- 361 (427)
T PRK02889 310 IYRMPASGGAAQRVT--FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-------------------------- 361 (427)
T ss_pred EEEEECCCCceEEEe--cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--------------------------
Confidence 55 55555543332 2233345688999999998776654 588898211
Q ss_pred eccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecC
Q 008844 274 MVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPV 347 (551)
Q Consensus 274 ~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~ 347 (551)
+. ...+... .... .+.|+|||++|+.++..++...+++.+..|.....+..+.+.+...+|+|-
T Consensus 362 ---g~-~~~lt~~-~~~~-----~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 362 ---GQ-VTALTDT-TRDE-----SPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ---CC-eEEccCC-CCcc-----CceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 11 1111111 1112 679999999999988765455677777777777777777788888999874
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=2.1e-13 Score=132.95 Aligned_cols=297 Identities=18% Similarity=0.171 Sum_probs=182.5
Q ss_pred CEE-EEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEE
Q 008844 36 TLL-AAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQA 114 (551)
Q Consensus 36 ~~l-atg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 114 (551)
+++ ++-..++.|.|.|..+.+.+..+... ...-..+.|+|||+++++++.|+.|.++|+.+++.+.++.....+.++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~--~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTG--GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-S--TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCC--CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 444 45566899999999999999999764 333455789999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-
Q 008844 115 RLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS- 193 (551)
Q Consensus 115 ~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~- 193 (551)
.+++++. .+++++...+.+.++|..+.+............ ......+.++..++....+++.-.
T Consensus 84 ~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-------------~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 84 AVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-------------DGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-T-------------TTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEcCCCC--EEEEEecCCCceeEeccccccceeecccccccc-------------cccCCCceeEEecCCCCEEEEEEcc
Confidence 9999875 356667789999999999987654321111000 001126677888888886665544
Q ss_pred CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceee
Q 008844 194 KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKM 272 (551)
Q Consensus 194 dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (551)
.+.|.+.|....+.+...............|+|++++++++ ...+.|-++|...
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~------------------------- 203 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT------------------------- 203 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-------------------------
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc-------------------------
Confidence 58999999887654433222455667789999999987665 4577899999221
Q ss_pred eeccceeeeee----cccccccceeee--eeeEE--cCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEE
Q 008844 273 KMVGSKCLALF----REFQDSITKMHW--KAPCF--SGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLA 343 (551)
Q Consensus 273 ~~~~~~~~~~~----~~~~~~v~~~~~--~~~~~--s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~ 343 (551)
...+..+ ..|.....+..- ....| +..+.+.++.-. ...+.+|+.. .+.++.+.....+ ..+.
T Consensus 204 ----~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig---~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 204 ----GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG---TDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp ----TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE-----TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred ----ceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc---CCccccchhhcCeEEEEEECCCCc-ceee
Confidence 1111111 011111110000 01122 333444433333 4567789988 9999999987666 8888
Q ss_pred EecCCCeEEEE----cCCCcEEEEecCCCCcce-------------eecCCcceec
Q 008844 344 WHPVHPIIVSV----SLTGWVYIWAKDYTENWS-------------AFAPDFKELE 382 (551)
Q Consensus 344 ~sp~~~~l~s~----s~dg~i~iW~~~~~~~~~-------------~~spd~~~l~ 382 (551)
.||++++|.+. ...++|.|+|..+.+... .|++||+++-
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEE
Confidence 99999999988 335889999999875322 5777776553
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.7e-14 Score=128.20 Aligned_cols=282 Identities=17% Similarity=0.272 Sum_probs=167.8
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCC-CCEEEEEeCCCeEEEEeccCC----c--------eeeEeeccccccc
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRR-GTLLAAGCSDGSCVIWDFETR----G--------IAKELRDKECVAA 69 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~d-g~~latg~~dg~I~iwd~~~~----~--------~~~~~~~~~h~~~ 69 (551)
|++|+... ..|..+... .+..|+|++|-|. ++-|++|+..| |.||..... . ..+.++..+| .+
T Consensus 122 Vriy~kss-t~pt~Lks~-sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~p 197 (445)
T KOG2139|consen 122 VRIYDKSS-TCPTKLKSV-SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NP 197 (445)
T ss_pred EEEeccCC-CCCceecch-hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ce
Confidence 45665554 445455432 3467999999996 46888888755 899986521 1 2233444444 79
Q ss_pred EEEEEecCCCCEEEEEeC-CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeee
Q 008844 70 ITSVCWSKYGHRILVSAA-DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL 148 (551)
Q Consensus 70 V~~l~~s~~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 148 (551)
|++|.|.+||..|++++. |..|.|||+.++..+.......+
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-------------------------------------- 239 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-------------------------------------- 239 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC--------------------------------------
Confidence 999999999999999987 77899999998876544321111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC-cEEEeeeccCccceEEEEEeeC
Q 008844 149 PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN-QIRALVPVSGAAVIKNIVFSRN 227 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~s~~ 227 (551)
.++-+.|+|+|.+|++++-|+..++|..... ....-. ...+.|...+|+|.
T Consensus 240 --------------------------g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~--lgsgrvqtacWspc 291 (445)
T KOG2139|consen 240 --------------------------GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI--LGSGRVQTACWSPC 291 (445)
T ss_pred --------------------------ceeeEEEcCCCCEEEEecccceeeeehhcccceeccee--ccCCceeeeeecCC
Confidence 6778899999999999999999999955433 332222 34559999999999
Q ss_pred CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcc-eeeeeccceeeeeecccccccceeeeeeeEEcCCCCE
Q 008844 228 GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGI-EKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEW 306 (551)
Q Consensus 228 g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~ 306 (551)
|++|+..+. |.-++|.+..+..... ... +.+. ..+.......+....+ .....-...+++|.|.|.|
T Consensus 292 GsfLLf~~s-gsp~lysl~f~~~~~~-~~~--------~~~~k~~lliaDL~e~ti~ag--~~l~cgeaq~lawDpsGey 359 (445)
T KOG2139|consen 292 GSFLLFACS-GSPRLYSLTFDGEDSV-FLR--------PQSIKRVLLIADLQEVTICAG--QRLCCGEAQCLAWDPSGEY 359 (445)
T ss_pred CCEEEEEEc-CCceEEEEeecCCCcc-ccC--------cccceeeeeeccchhhhhhcC--cccccCccceeeECCCCCE
Confidence 998766543 3344555221110000 000 0000 0000000000111111 0001112238999999999
Q ss_pred EEEeeccC-----CcceEEEEecCCceeEEEe--c--CCCceEEEEEecC---CCeEEEEcCCCcEEEEecC
Q 008844 307 VIAGSASK-----GEHKIYIWDRAGYLVKILE--G--PKEALIDLAWHPV---HPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 307 l~~gs~~~-----~dg~I~iwd~~~~~~~~l~--~--h~~~v~~l~~sp~---~~~l~s~s~dg~i~iW~~~ 366 (551)
||+....+ +-..|.+||....++..+. + .......+.|+|. +++|..+=..|.+.-|.+.
T Consensus 360 Lav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 360 LAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 99887632 1245677887733332222 1 1123556677663 4455555557777777654
No 209
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.3e-13 Score=130.07 Aligned_cols=282 Identities=11% Similarity=0.187 Sum_probs=188.3
Q ss_pred eEEEEEEcCCCCEEEEE-----eC-----CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEE
Q 008844 25 VMKCIAFNRRGTLLAAG-----CS-----DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLW 94 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg-----~~-----dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vw 94 (551)
.+.++.|||.|++|.+= .. .-.+.+|+++++.....+... ...-+++.|+.|..+.+-- ..+.+.+|
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k--~Q~~W~~qfs~dEsl~arl-v~nev~f~ 151 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK--MQNGWVPQFSIDESLAARL-VSNEVQFY 151 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehh--hhcCcccccccchhhhhhh-hcceEEEE
Confidence 78999999999999862 11 234779999996665555544 2222689999887643322 25679999
Q ss_pred EcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEee----CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCC
Q 008844 95 DVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACP----LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDG 170 (551)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (551)
++...+.+..-.....+..+.++|....+.+++... .-..++||.+......... ....+..
T Consensus 152 ~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-------------a~ksFFk- 217 (566)
T KOG2315|consen 152 DLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-------------ANKSFFK- 217 (566)
T ss_pred ecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-------------hhccccc-
Confidence 987755544444456678888888865544444332 2345777776532211100 0000000
Q ss_pred CCCCCceEEEEeeCCCE-EEEEec-----------CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe--eC
Q 008844 171 TPPFTPTAACFNKYGDL-VYVGNS-----------KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN--SN 236 (551)
Q Consensus 171 ~~~~~i~~~~~s~~g~~-l~~g~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~--s~ 236 (551)
..-..+.|++-|.- |+.++. ..+++++++....+...+ ...++|.++.|+|+|+-++++ -+
T Consensus 218 ---adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfM 292 (566)
T KOG2315|consen 218 ---ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFM 292 (566)
T ss_pred ---cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecc
Confidence 02345778877743 333322 246888888854544444 678999999999999876654 45
Q ss_pred CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCc
Q 008844 237 DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGE 316 (551)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~d 316 (551)
-..+.||| .+|.-.+.-.+++-+ ++-|+|.|++|+.++..+--
T Consensus 293 PAkvtifn--------------------------------lr~~~v~df~egpRN-----~~~fnp~g~ii~lAGFGNL~ 335 (566)
T KOG2315|consen 293 PAKVTIFN--------------------------------LRGKPVFDFPEGPRN-----TAFFNPHGNIILLAGFGNLP 335 (566)
T ss_pred cceEEEEc--------------------------------CCCCEeEeCCCCCcc-----ceEECCCCCEEEEeecCCCC
Confidence 67888998 333333443444444 78999999999998887667
Q ss_pred ceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcC------CCcEEEEecCC
Q 008844 317 HKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSL------TGWVYIWAKDY 367 (551)
Q Consensus 317 g~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~------dg~i~iW~~~~ 367 (551)
|.|-|||+. .+++..+... .-+-+.|+|+|.+|+|+.. |+.++||+...
T Consensus 336 G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 336 GDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 899999999 7888777643 4567899999999998875 78899999875
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.2e-14 Score=138.77 Aligned_cols=299 Identities=13% Similarity=0.161 Sum_probs=209.0
Q ss_pred cceeecccccceEEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEE
Q 008844 14 PEVIEEYLEHGVMKCIAFNRRGTLL-AAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLT 92 (551)
Q Consensus 14 ~~~l~~~~h~~~V~~l~fs~dg~~l-atg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~ 92 (551)
.+.+..+.+....+.|..+|||+|| |+|..--.|++||+....+. |.-|-....|...-++.|-..++.-..|.+|-
T Consensus 42 ieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 42 IELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred HHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceee
Confidence 3455666778888999999999975 56777889999999865443 33232255666666676666666666788887
Q ss_pred EEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 93 LWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
+.. .+.....++.+.....++++.-.. -++.++....++-+++..|.-..-... .
T Consensus 120 fHa--k~G~hy~~RIP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~--------------------~ 174 (703)
T KOG2321|consen 120 FHA--KYGRHYRTRIPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFET--------------------D 174 (703)
T ss_pred ehh--hcCeeeeeecCcCCccccccCCCc---cEEEeecCcceEEEEcccccccccccc--------------------c
Confidence 764 233455555555555555554322 356666777788888888864321111 1
Q ss_pred CCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc-----Cc-----cceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 173 PFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS-----GA-----AVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-----~~-----~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
...++++..++...+|++|+.+|.|..||.+....+..+... |. ..|+++.|+.+|-.+++|+.+|.|.|
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i 254 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI 254 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE
Confidence 127899999999999999999999999999998776665432 22 34999999999999999999999999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC--CCEEEEeeccCCcceEE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD--GEWVIAGSASKGEHKIY 320 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d--g~~l~~gs~~~~dg~I~ 320 (551)
||+... ...+..-+...-+|. .+.|.+. +..|++.. ...++
T Consensus 255 yDLRa~----------------------------~pl~~kdh~~e~pi~-----~l~~~~~~~q~~v~S~D----k~~~k 297 (703)
T KOG2321|consen 255 YDLRAS----------------------------KPLLVKDHGYELPIK-----KLDWQDTDQQNKVVSMD----KRILK 297 (703)
T ss_pred EEcccC----------------------------CceeecccCCcccee-----eecccccCCCceEEecc----hHHhh
Confidence 993321 111222222333344 5566553 55666665 48899
Q ss_pred EEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEe---cCCCCcceeecCC
Q 008844 321 IWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA---KDYTENWSAFAPD 377 (551)
Q Consensus 321 iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~---~~~~~~~~~~spd 377 (551)
|||-. |+....+.. ...++.+++-|++.+++++-.++.+..|= +.....|..|-.+
T Consensus 298 iWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWCSfLdn 357 (703)
T KOG2321|consen 298 IWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWCSFLDN 357 (703)
T ss_pred hcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCCCchhhhHHHh
Confidence 99999 999888874 55699999999999999998877665554 4445578765544
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.1e-15 Score=141.44 Aligned_cols=253 Identities=15% Similarity=0.210 Sum_probs=174.1
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEec------CCCCCcEEEEeeCCCCcEEEE
Q 008844 66 CVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHP------GSSTPSLCLACPLSSAPMIVD 139 (551)
Q Consensus 66 h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~~~~i~i~d 139 (551)
|...|.|+.|+.+...+++++ |..+.+|.-.+......+..+........++ .+.....++.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 467788999998776666555 5555555433333333333322211111112 233455788889999888876
Q ss_pred cCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccce
Q 008844 140 LSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVI 219 (551)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i 219 (551)
-...-.. ....|...+.+-.|+|+|.-|++++.||.|+||.- +|.+..++. ....+|
T Consensus 92 k~~rVE~---------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~~v 148 (737)
T KOG1524|consen 92 KSARVER---------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEESI 148 (737)
T ss_pred ccchhhh---------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh-hcCcee
Confidence 5443221 12334447889999999999999999999999984 454444443 567889
Q ss_pred EEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeE
Q 008844 220 KNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 299 (551)
+|++|.|+...++.+ ..+.+.|=. +.+ ...+..++.|.+.|. ++.
T Consensus 149 ~c~~W~p~S~~vl~c-~g~h~~IKp-L~~----------------------------n~k~i~WkAHDGiiL-----~~~ 193 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFC-QGGHISIKP-LAA----------------------------NSKIIRWRAHDGLVL-----SLS 193 (737)
T ss_pred EEEEECCCCCceEEe-cCCeEEEee-ccc----------------------------ccceeEEeccCcEEE-----Eee
Confidence 999999998776665 334554443 111 233556788999998 889
Q ss_pred EcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc-eeecCCc
Q 008844 300 FSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW-SAFAPDF 378 (551)
Q Consensus 300 ~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~-~~~spd~ 378 (551)
|++....|++|+. |-..+|||-.|..+..-..|..+|++++|.|+ ..++.+|. +++++=.+..+... .+|+|||
T Consensus 194 W~~~s~lI~sgGE---D~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 194 WSTQSNIIASGGE---DFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRVGSIFNLSWSADG 268 (737)
T ss_pred cCccccceeecCC---ceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-eeeeecCCCccceEEEEEcCCC
Confidence 9999999999999 99999999999999888899999999999999 66666664 46664444444322 2788888
Q ss_pred ceec
Q 008844 379 KELE 382 (551)
Q Consensus 379 ~~l~ 382 (551)
..++
T Consensus 269 TQ~a 272 (737)
T KOG1524|consen 269 TQAT 272 (737)
T ss_pred ceee
Confidence 7765
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.8e-15 Score=139.52 Aligned_cols=160 Identities=15% Similarity=0.116 Sum_probs=114.8
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee-ccCccceEEEEEeeCC---CE-E-EEeeCCCeEEEEeCcCC
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP-VSGAAVIKNIVFSRNG---QY-L-LTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~s~~g---~~-l-~t~s~Dg~i~iwd~~~~ 248 (551)
.|.++.|+|||++|++-+.+ ...||+.+++..+.... ......+..+.|+.++ .+ | +....-+.|+.|++...
T Consensus 188 eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w 266 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW 266 (398)
T ss_pred ccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeee
Confidence 88999999999999999999 99999999997766553 2344566778888776 22 2 23333566777772111
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY 327 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~ 327 (551)
... .. .+....... ... +++++.|.+|+++|.|+. +|.|-|++.. -+
T Consensus 267 ~~~--~~---------------------l~~~~~~~~-~~s-----iSsl~VS~dGkf~AlGT~---dGsVai~~~~~lq 314 (398)
T KOG0771|consen 267 SGS--NF---------------------LRLRKKIKR-FKS-----ISSLAVSDDGKFLALGTM---DGSVAIYDAKSLQ 314 (398)
T ss_pred ccc--cc---------------------cchhhhhhc-cCc-----ceeEEEcCCCcEEEEecc---CCcEEEEEeceee
Confidence 000 00 000001111 112 338999999999999999 9999999998 55
Q ss_pred eeEEE-ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 328 LVKIL-EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 328 ~~~~l-~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
++..+ +.|...|+.+.|+|+.+++++.+.+..+.|..+.-
T Consensus 315 ~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 315 RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 55444 56889999999999999999999999999888764
No 213
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=3.5e-15 Score=141.05 Aligned_cols=207 Identities=16% Similarity=0.219 Sum_probs=155.4
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEE
Q 008844 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQAR 115 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 115 (551)
..|+.++.||.+.|.+-. +++-+.+..| .+.|.+-.|+|+|.-|++++.||.|++|. ++|-.-.++....
T Consensus 76 d~~~i~s~DGkf~il~k~-~rVE~sv~AH--~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~------ 145 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARVERSISAH--AAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNE------ 145 (737)
T ss_pred ceEEEEcCCceEEEeccc-chhhhhhhhh--hhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcC------
Confidence 467778899999988743 6666667655 99999999999999999999999999998 4453222211111
Q ss_pred EecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc
Q 008844 116 LHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG 195 (551)
Q Consensus 116 ~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg 195 (551)
..|.|++|.|+.+-++.+. .+
T Consensus 146 ----------------------------------------------------------~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 146 ----------------------------------------------------------ESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred ----------------------------------------------------------ceeEEEEECCCCCceEEec-CC
Confidence 0677888888775554433 45
Q ss_pred eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeec
Q 008844 196 EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMV 275 (551)
Q Consensus 196 ~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (551)
.+.|=.+.....+.... .|.+-|.++.|++...++++|+.|-..+|||..
T Consensus 167 h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----------------------------- 216 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----------------------------- 216 (737)
T ss_pred eEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeeccc-----------------------------
Confidence 67777776655555555 899999999999999999999999999999921
Q ss_pred cceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEc
Q 008844 276 GSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVS 355 (551)
Q Consensus 276 ~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s 355 (551)
+..+..-..|..+|+ +++|.|+ +.++.++. +++++ -....+.|..++||+||..++.|.
T Consensus 217 -G~~Lf~S~~~ey~IT-----Sva~npd-~~~~v~S~----nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 217 -GANLFTSAAEEYAIT-----SVAFNPE-KDYLLWSY----NTARF----------SSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred -CcccccCChhcccee-----eeeeccc-cceeeeee----eeeee----------cCCCccceEEEEEcCCCceeeccc
Confidence 334555566777777 9999999 77777776 44441 122357899999999999999999
Q ss_pred CCCcEEE
Q 008844 356 LTGWVYI 362 (551)
Q Consensus 356 ~dg~i~i 362 (551)
..|.+.+
T Consensus 276 ~~G~v~~ 282 (737)
T KOG1524|consen 276 STGQLIV 282 (737)
T ss_pred cCceEEE
Confidence 8888665
No 214
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.7e-14 Score=145.35 Aligned_cols=256 Identities=16% Similarity=0.197 Sum_probs=181.5
Q ss_pred cEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC----CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ----TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 69 ~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
+...+.|+|-...++++...-.|+|||.+.++.+..|..+. .+..+.+... ....++++++.||.|+||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE-QDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc-cchhheeeeccCceEEEecccccc
Confidence 45677888888889999878899999999999988886554 3455555543 446689999999999999643321
Q ss_pred -eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEE
Q 008844 145 -TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIV 223 (551)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 223 (551)
.....+..+..-....+..+ . .-.-+.|.....+|++++.-..|+|||......+..++......|+++.
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r--------~-~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGAR--------G-TGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred cCCceeEEeeccccccCccCC--------C-CCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 11111111111111111111 1 1245678777777777777889999999999999888877778888887
Q ss_pred Eee-CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccc--cceeeeeeeEE
Q 008844 224 FSR-NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDS--ITKMHWKAPCF 300 (551)
Q Consensus 224 ~s~-~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~ 300 (551)
-+. .|..|++|..||.||+||.+++.. ...+...+.|++. |. .+.+
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~--------------------------ds~v~~~R~h~~~~~Iv-----~~sl 1264 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPP--------------------------DSLVCVYREHNDVEPIV-----HLSL 1264 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCc--------------------------cccceeecccCCcccce-----eEEe
Confidence 654 478999999999999999555431 1235566777776 65 6677
Q ss_pred cCCCC-EEEEeeccCCcceEEEEecCC-cee--EEEecCC--C-ceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 301 SGDGE-WVIAGSASKGEHKIYIWDRAG-YLV--KILEGPK--E-ALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 301 s~dg~-~l~~gs~~~~dg~I~iwd~~~-~~~--~~l~~h~--~-~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
-+.|- .|++|+. +|.|++||++. ... ..+..|- + .++++..|++.+++|+|+. +.|.||++...+
T Consensus 1265 q~~G~~elvSgs~---~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQ---DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred ecCCCcceeeecc---CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 77554 4899999 99999999993 222 2222333 3 4999999999999999998 999999998643
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.3e-13 Score=139.55 Aligned_cols=238 Identities=16% Similarity=0.222 Sum_probs=157.0
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC---CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCC
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA---DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSS 121 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~ 121 (551)
..|.+||... ...+.+..+ ...+.+.+|+|||+.|+..+. +..|.+||+.++................|+|++.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~--~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDG--SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecC--CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC
Confidence 3788999864 444555544 778999999999999888764 4689999998887654444444566788999875
Q ss_pred CCcEEEEeeCCCC--cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-C--ce
Q 008844 122 TPSLCLACPLSSA--PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-K--GE 196 (551)
Q Consensus 122 ~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-d--g~ 196 (551)
. ++++...++. |++||+.++....+.. +.......+|+|+|+.|+..+. + ..
T Consensus 259 ~--la~~~~~~g~~~Iy~~d~~~~~~~~Lt~---------------------~~~~~~~~~~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 259 K--VVMSLSQGGNTDIYTMDLRSGTTTRLTD---------------------SPAIDTSPSYSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred E--EEEEEecCCCceEEEEECCCCceEEccC---------------------CCCccCceeEcCCCCEEEEEECCCCCCe
Confidence 3 4455555554 6677887776543311 1113456899999998887764 3 36
Q ss_pred EEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC---CeEEEEeCcCCccccchhhhhhhccCCCCCcceeee
Q 008844 197 ILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND---RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273 (551)
Q Consensus 197 i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (551)
|++||+.++...... .+...+....|+|+|++|+..+.+ ..|.+|++..
T Consensus 316 Iy~~d~~g~~~~~lt--~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-------------------------- 367 (435)
T PRK05137 316 LYVMNADGSNPRRIS--FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-------------------------- 367 (435)
T ss_pred EEEEECCCCCeEEee--cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--------------------------
Confidence 889998877665444 334556778999999999877653 2567777110
Q ss_pred eccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCc---ceEEEEecCCceeEEEecCCCceEEEEEecC
Q 008844 274 MVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGE---HKIYIWDRAGYLVKILEGPKEALIDLAWHPV 347 (551)
Q Consensus 274 ~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~d---g~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~ 347 (551)
. ....+.. ...+. .+.|+|||++|+..+...+. ..|+++++.+.....+.. ...+...+|+|-
T Consensus 368 ---~-~~~~lt~-~~~~~-----~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 368 ---S-GERILTS-GFLVE-----GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT-PGDASDPAWSPL 433 (435)
T ss_pred ---C-ceEeccC-CCCCC-----CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC-CCCccCcccCCC
Confidence 1 1111111 11122 67999999999887653222 368888888444455553 445777888773
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.1e-13 Score=123.53 Aligned_cols=291 Identities=15% Similarity=0.190 Sum_probs=188.2
Q ss_pred ceEEEEEEcCCCCEEEEE-eCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEE-EEeCCCCEEEEEcCCCeE
Q 008844 24 GVMKCIAFNRRGTLLAAG-CSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRIL-VSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg-~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~s~dg~i~vwd~~~~~~ 101 (551)
..|..|.|..+.-+++++ ..++.|.+|++...+....+... ..++.+++|||+|+.|+ +...+-.|.||.+.+.+.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 567888999888766654 66889999999988888888765 78999999999996555 555699999999988776
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEE--------------EcCCCceeeeccccCCCCCCCCCC---CC
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIV--------------DLSTGSTSILPIAVPDVANGIAPS---SR 164 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~--------------d~~~~~~~~~~~~~~~~~~~~~~~---~~ 164 (551)
...-........+.|+|++. +++.++.-.....+ ++.+-...-+ ......+-++.- ..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgi--eWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQ---FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGI--EWSPDGNWLAVWDNVLE 201 (447)
T ss_pred EEecccccCceeEEECCCCc---eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCc--eECCCCcEEEEecchhh
Confidence 55544455667888999875 34444332211111 1111111100 000111000000 00
Q ss_pred CCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEE-----------------------------------
Q 008844 165 NKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRA----------------------------------- 209 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~----------------------------------- 209 (551)
.+.........+..+.|+|.+++|++|+.|+.++|.+--+-+...
T Consensus 202 ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p 281 (447)
T KOG4497|consen 202 YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP 281 (447)
T ss_pred heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence 000111222378889999999999999999998886643211100
Q ss_pred -------------------------eeec-----cCccceEEEEEeeCCCEEEEeeC--CCeEEEEeCcCCccccchhhh
Q 008844 210 -------------------------LVPV-----SGAAVIKNIVFSRNGQYLLTNSN--DRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 210 -------------------------~~~~-----~~~~~i~~l~~s~~g~~l~t~s~--Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
.++. .....+.-++|++|..+++|-.. -+.+.+||
T Consensus 282 ~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wd------------- 348 (447)
T KOG4497|consen 282 TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWD------------- 348 (447)
T ss_pred CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEe-------------
Confidence 0000 01234567899999999888643 46789999
Q ss_pred hhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCC
Q 008844 258 DIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKE 337 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~ 337 (551)
++.++-|.-.+...++....|.|....|+.... ...+|+|...|..+....+..-
T Consensus 349 ----------------------lq~l~l~avLiQk~piraf~WdP~~prL~vctg---~srLY~W~psg~~~V~vP~~GF 403 (447)
T KOG4497|consen 349 ----------------------LQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTG---KSRLYFWAPSGPRVVGVPKKGF 403 (447)
T ss_pred ----------------------chhhhhhhhhhhccceeEEEeCCCCceEEEEcC---CceEEEEcCCCceEEecCCCCc
Confidence 333333333344444558889998877777766 6789999998655555555557
Q ss_pred ceEEEEEecCCCeEEEEcCCCc
Q 008844 338 ALIDLAWHPVHPIIVSVSLTGW 359 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s~dg~ 359 (551)
.|..+.|+-.|..++.++.|..
T Consensus 404 ~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecCCCcEEEEEcCCce
Confidence 8999999999999999998854
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=3.5e-14 Score=129.72 Aligned_cols=244 Identities=17% Similarity=0.264 Sum_probs=173.2
Q ss_pred cceEEEEEEcCCCC--EEEEEeCCCeEEEEeccCCceeeEe----ecccccccEEEEEecCCCCEEEEEeCCCCEEEEEc
Q 008844 23 HGVMKCIAFNRRGT--LLAAGCSDGSCVIWDFETRGIAKEL----RDKECVAAITSVCWSKYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 23 ~~~V~~l~fs~dg~--~latg~~dg~I~iwd~~~~~~~~~~----~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~ 96 (551)
...|+.++|.-+++ .|...+.+..+..+.+....+...+ ..+....+|..++.. +| .|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 35688888877654 4444446777888888776665554 222336778888776 33 6888888999999998
Q ss_pred CCCeE----EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEK----ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 97 ~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
..+.. +..+..+.....+.-+
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~------------------------------------------------------- 157 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQT------------------------------------------------------- 157 (412)
T ss_pred cCCccccccceeeecCCceeeeccC-------------------------------------------------------
Confidence 75542 2222222222222222
Q ss_pred CCCceEEEEeeCC-CEEEEEecC--ceEEEEECCCCcEEEeeecc--------CccceEEEEEeeC--CCEEEEeeCCCe
Q 008844 173 PFTPTAACFNKYG-DLVYVGNSK--GEILVIDHKSNQIRALVPVS--------GAAVIKNIVFSRN--GQYLLTNSNDRT 239 (551)
Q Consensus 173 ~~~i~~~~~s~~g-~~l~~g~~d--g~i~i~d~~~~~~~~~~~~~--------~~~~i~~l~~s~~--g~~l~t~s~Dg~ 239 (551)
+.. .++++|+.. ..+.|||+.+.+.+..-... -.-.++.+.|-+. ...|++++.-+.
T Consensus 158 ----------~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 158 ----------DTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred ----------CCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEeccee
Confidence 222 245557666 67778887776444332111 1234677888887 788999999999
Q ss_pred EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceE
Q 008844 240 IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKI 319 (551)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I 319 (551)
+|+||+.. +.+++..+.-.+..+. ++...|+|++|++|.. -+.+
T Consensus 228 vR~YDt~~----------------------------qRRPV~~fd~~E~~is-----~~~l~p~gn~Iy~gn~---~g~l 271 (412)
T KOG3881|consen 228 VRLYDTRH----------------------------QRRPVAQFDFLENPIS-----STGLTPSGNFIYTGNT---KGQL 271 (412)
T ss_pred EEEecCcc----------------------------cCcceeEeccccCcce-----eeeecCCCcEEEEecc---cchh
Confidence 99999331 2445666665666666 8899999999999999 8999
Q ss_pred EEEecC-CceeEE-EecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 320 YIWDRA-GYLVKI-LEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 320 ~iwd~~-~~~~~~-l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
..||++ +.++.. +.+-.+.|.+|..||.+++||+||.|..|||+|+.+.+
T Consensus 272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred heecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 999999 777766 88899999999999999999999999999999999854
No 218
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=3.3e-14 Score=127.61 Aligned_cols=294 Identities=17% Similarity=0.249 Sum_probs=180.4
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-----eeeEeeccc----------ccccEEEEEecCCC--CEEEEE
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG-----IAKELRDKE----------CVAAITSVCWSKYG--HRILVS 85 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~-----~~~~~~~~~----------h~~~V~~l~~s~~g--~~l~s~ 85 (551)
..-|.++.|...|.+||||..+|.|.++.-.... ....+..|. -...|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999654322 223333331 13578999999865 356666
Q ss_pred eCCCCEEEEEcCCCeEEE-EEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCC
Q 008844 86 AADKSLTLWDVLKGEKIT-RIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSR 164 (551)
Q Consensus 86 s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (551)
..|.+|++|.+....... .+...... .|. +-....+++.. ..........
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~-----~~~----------------------~~~~lr~p~~~--~~~~~vea~p 155 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEG-----PPG----------------------TITSLRLPVEG--RHDLEVEASP 155 (433)
T ss_pred cCCcceeeeeeeccccccccccccccC-----CCC----------------------ccceeeceeec--cccceeeeee
Confidence 779999999986432211 00000000 000 00000000000 0000001111
Q ss_pred CCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCc-E--EEeeeccC-----ccceEEEEEeeC-CCEEEEee
Q 008844 165 NKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQ-I--RALVPVSG-----AAVIKNIVFSRN-GQYLLTNS 235 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~-~--~~~~~~~~-----~~~i~~l~~s~~-g~~l~t~s 235 (551)
.......|++.|.++.++.|+..++++. |=.|.+|++.-.. . +..+. ++ ...|++..|+|. ...++-.+
T Consensus 156 rRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 156 RRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 1233466888999999999999888765 7789999986432 2 22222 22 356889999996 45777788
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKG 315 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~ 315 (551)
..|+|++.|++....-. ....+-. ..........+.+.-..| +.+.||++|+||++-..
T Consensus 234 SKGtIrLcDmR~~aLCd--~hsKlfE-----------epedp~~rsffseiIsSI-----SDvKFs~sGryilsRDy--- 292 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCD--AHSKLFE-----------EPEDPSSRSFFSEIISSI-----SDVKFSHSGRYILSRDY--- 292 (433)
T ss_pred CCCcEEEeechhhhhhc--chhhhhc-----------cccCCcchhhHHHHhhhh-----hceEEccCCcEEEEecc---
Confidence 89999999943210000 0000000 000000011122222223 38899999999999886
Q ss_pred cceEEEEecC--CceeEEEecCCC------------ce---EEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 316 EHKIYIWDRA--GYLVKILEGPKE------------AL---IDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 316 dg~I~iwd~~--~~~~~~l~~h~~------------~v---~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
-+|.|||+. .+++..++.|.. .| ..++|+.++.+++||+....++++++..+.
T Consensus 293 -ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 293 -LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 789999997 788888877652 23 458899999999999999999999976553
No 219
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=8.8e-12 Score=121.94 Aligned_cols=292 Identities=17% Similarity=0.239 Sum_probs=180.0
Q ss_pred EEEEeCC----CeEEEEec--cCCceeeEeecccccccEEEEEecCCCCEEEEEeC----CCCEEEEEcCCC--e--EEE
Q 008844 38 LAAGCSD----GSCVIWDF--ETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA----DKSLTLWDVLKG--E--KIT 103 (551)
Q Consensus 38 latg~~d----g~I~iwd~--~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~----dg~i~vwd~~~~--~--~~~ 103 (551)
+++|+.. +.|.+|.+ .++.+...-. .........|+++|++++|+++.. .+.|..|.+... . .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556665 68999988 3444322211 112456778999999999999876 568999988764 3 333
Q ss_pred EEE-cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC-ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 104 RIV-LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG-STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 104 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
... ....+..+.+.|++. .++++...++.+.++++... .................+ .......+.++.|
T Consensus 81 ~~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~-------~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP-------DRQEGPHPHQVVF 151 (345)
T ss_dssp EEEESSSCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST-------TTTSSTCEEEEEE
T ss_pred eeccCCCCcEEEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc-------cccccccceeEEE
Confidence 343 455677888888764 46666667999999999874 332221111000000000 0011126788999
Q ss_pred eeCCCEEEEEec-CceEEEEECCCCc--E--EEeeeccCccceEEEEEeeCCCEEEEee-CCCeEEEEeCcCCccccchh
Q 008844 182 NKYGDLVYVGNS-KGEILVIDHKSNQ--I--RALVPVSGAAVIKNIVFSRNGQYLLTNS-NDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 182 s~~g~~l~~g~~-dg~i~i~d~~~~~--~--~~~~~~~~~~~i~~l~~s~~g~~l~t~s-~Dg~i~iwd~~~~~~~~~~~ 255 (551)
+|+|+++++... ...|.+|++.... + ...+.......-+.++|+|+++++++.. .++.|.+|++. +.....+.
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~-~~~g~~~~ 230 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD-PSDGSLTE 230 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE-TTTTEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec-ccCCceeE
Confidence 999998888653 4579999987655 3 2333445667789999999999876654 48889999822 11111111
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeec-ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---Cce--e
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFR-EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GYL--V 329 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~~--~ 329 (551)
+. .+..+. ...... .-..++++|||++|+++... .+.|.+|++. |.+ +
T Consensus 231 ~~---------------------~~~~~~~~~~~~~---~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 231 IQ---------------------TISTLPEGFTGEN---APAEIAISPDGRFLYVSNRG--SNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp EE---------------------EEESCETTSCSSS---SEEEEEE-TTSSEEEEEECT--TTEEEEEEECTTTTTEEEE
T ss_pred EE---------------------EeeeccccccccC---CceeEEEecCCCEEEEEecc--CCEEEEEEEecCCCceEEE
Confidence 00 011110 111110 12278999999999998763 6899999994 433 3
Q ss_pred EEEecCCCceEEEEEecCCCeEEEEcC-CCcEEEEecC
Q 008844 330 KILEGPKEALIDLAWHPVHPIIVSVSL-TGWVYIWAKD 366 (551)
Q Consensus 330 ~~l~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~ 366 (551)
..+.........++++|++++|+++.. ++.|.+|+++
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 333333445899999999999988875 7889999885
No 220
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=1.9e-13 Score=136.92 Aligned_cols=236 Identities=16% Similarity=0.144 Sum_probs=169.7
Q ss_pred CCCEEEEEcCCC-eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 88 DKSLTLWDVLKG-EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 88 dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
++.+.||++... .+...+.....+.++.|+|.. +.+++.|+.+|+|.+||++.+..... ....
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~--p~ll~gG~y~GqV~lWD~~~~~~~~~--------------s~ls 284 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFD--PNLLAGGCYNGQVVLWDLRKGSDTPP--------------SGLS 284 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCC--cceEEeeccCceEEEEEccCCCCCCC--------------cccc
Confidence 347999999876 667778888899999999965 66999999999999999998876420 0111
Q ss_pred CCCCCCCCCceEEEEeeCCCE--EEEEecCceEEEEECCCCcE-EEee----e------ccCccceEEEEEeeC-CCEEE
Q 008844 167 YSDGTPPFTPTAACFNKYGDL--VYVGNSKGEILVIDHKSNQI-RALV----P------VSGAAVIKNIVFSRN-GQYLL 232 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~--l~~g~~dg~i~i~d~~~~~~-~~~~----~------~~~~~~i~~l~~s~~-g~~l~ 232 (551)
.....|..+++.+.|..+-.- |++++.||.|..|+++.-.. .... . ......++++.|.+. -..++
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 223445558899999776544 99999999999998875433 1111 0 022356889999874 45789
Q ss_pred EeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeec
Q 008844 233 TNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSA 312 (551)
Q Consensus 233 t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~ 312 (551)
+|+..|.|.--. +........ .-.+....+..|.+.|. ++.++|-+..++..+.
T Consensus 365 VGTe~G~v~~~~-r~g~~~~~~--------------------~~~~~~~~~~~h~g~v~-----~v~~nPF~~k~fls~g 418 (555)
T KOG1587|consen 365 VGTEEGKVYKGC-RKGYTPAPE--------------------VSYKGHSTFITHIGPVY-----AVSRNPFYPKNFLSVG 418 (555)
T ss_pred EEcCCcEEEEEe-ccCCccccc--------------------ccccccccccccCcceE-----eeecCCCccceeeeec
Confidence 999999987743 111000000 00112334555666776 8899998877777776
Q ss_pred cCCcceEEEEecC--CceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCC
Q 008844 313 SKGEHKIYIWDRA--GYLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 313 ~~~dg~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~ 368 (551)
|-+|+||... ..++..+..+...|++++|||..+ .++++..||.|.|||+...
T Consensus 419 ---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 419 ---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 8999999987 677777887888899999999998 5666667999999999753
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1.7e-15 Score=140.87 Aligned_cols=232 Identities=13% Similarity=0.175 Sum_probs=190.0
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 146 (551)
......+.++.+|++|+.|+.-|.|..+|+.++.+...+.....+..+.|..+. .+++......+++||-..-...
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne----q~~AVAQK~y~yvYD~~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE----QFFAVAQKKYVYVYDNNGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch----HHHHhhhhceEEEecCCCcEEe
Confidence 345678899999999999999999999999999999999998888888887654 4778888889999997766655
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR 226 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~ 226 (551)
++.... .+..+.|-|..-+|++++..|.+..-|+.+|+++..+. ...+.+..++-+|
T Consensus 205 Clk~~~----------------------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 205 CLKRHI----------------------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNP 261 (545)
T ss_pred ehhhcC----------------------chhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCC
Confidence 442221 67888999998899999999999999999999988886 6678888899999
Q ss_pred CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCE
Q 008844 227 NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEW 306 (551)
Q Consensus 227 ~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~ 306 (551)
-+..+-+|...|+|.+|.. .....+..+..|.++|. ++++.++|+|
T Consensus 262 ~NaVih~GhsnGtVSlWSP-----------------------------~skePLvKiLcH~g~V~-----siAv~~~G~Y 307 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSP-----------------------------NSKEPLVKILCHRGPVS-----SIAVDRGGRY 307 (545)
T ss_pred ccceEEEcCCCceEEecCC-----------------------------CCcchHHHHHhcCCCcc-----eEEECCCCcE
Confidence 9989999999999999982 22445666778999998 8999999999
Q ss_pred EEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 307 VIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 307 l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
+|+++. |..|+|||++ ...+..+.. ..+...+++|..| ++++|....|.||.=
T Consensus 308 MaTtG~---Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 308 MATTGL---DRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred Eeeccc---ccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 999999 9999999999 555555543 3567788887665 444455568999963
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.2e-14 Score=125.97 Aligned_cols=238 Identities=17% Similarity=0.276 Sum_probs=160.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC-CCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY-GHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
-.+..++|++.-..+|++..|-.|+||+-.. .+...++.. -...|+||+|-|. +..|+.|+. +-|.+|....-...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~-sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSV-SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecch-hhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 3567889998777788999999999999876 555555432 3678999999996 456777775 45999976421111
Q ss_pred -EEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 103 -TRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 103 -~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
+.++.... ...+.-.|+ ...|+++.
T Consensus 176 ~r~~~~~s~~~~qvl~~pg-----------------------------------------------------h~pVtsmq 202 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPG-----------------------------------------------------HNPVTSMQ 202 (445)
T ss_pred ccccccccccchhheeCCC-----------------------------------------------------CceeeEEE
Confidence 11110000 000000111 12899999
Q ss_pred EeeCCCEEEEEec-CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 181 FNKYGDLVYVGNS-KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 181 ~s~~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
|+++|..+++++. +..|.|||..++..+.... ...+.++-+.|||+|.+|+.++-|+..++|.....
T Consensus 203 wn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~----------- 270 (445)
T KOG2139|consen 203 WNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS----------- 270 (445)
T ss_pred EcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCCEEEEecccceeeeehhccc-----------
Confidence 9999999988875 6789999999998877664 55678899999999999999999999999961110
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEE------
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKI------ 331 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~------ 331 (551)
..+.+ .....+.|. ..+|+|+|++|+.... +.-.+|.+. ++....
T Consensus 271 -----------------wt~er-w~lgsgrvq-----tacWspcGsfLLf~~s----gsp~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 271 -----------------WTKER-WILGSGRVQ-----TACWSPCGSFLLFACS----GSPRLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred -----------------ceecc-eeccCCcee-----eeeecCCCCEEEEEEc----CCceEEEEeecCCCccccCcccc
Confidence 11111 111223444 7899999999988875 455566554 221110
Q ss_pred --------E------ec---CCCceEEEEEecCCCeEEEEcC
Q 008844 332 --------L------EG---PKEALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 332 --------l------~~---h~~~v~~l~~sp~~~~l~s~s~ 356 (551)
| .+ -.+++.+|+|.|.|.+||+.-.
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 1 11 1357889999999999998755
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.5e-13 Score=136.65 Aligned_cols=210 Identities=13% Similarity=0.129 Sum_probs=137.6
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC---CCeEEEEeccCCceeeEeecccccccEEEEEecCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS---DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~---dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g 79 (551)
|.+||..... ++.+.. +...+.+.+|||||+.||..+. +..|.+|++.+++....... ...+..+.|+|||
T Consensus 181 l~~~d~dg~~-~~~lt~--~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~~~~~~~~~SPDG 254 (429)
T PRK03629 181 LRVSDYDGYN-QFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---PRHNGAPAFSPDG 254 (429)
T ss_pred EEEEcCCCCC-CEEeec--CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---CCCcCCeEECCCC
Confidence 5566655433 334433 4567899999999999987542 35799999988764333222 2335578999999
Q ss_pred CEEEEE-eCCC--CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEE--EcCCCceeeeccccCC
Q 008844 80 HRILVS-AADK--SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIV--DLSTGSTSILPIAVPD 154 (551)
Q Consensus 80 ~~l~s~-s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~--d~~~~~~~~~~~~~~~ 154 (551)
+.|+.. +.++ .|.+||+.++................|+|++.. ++++....+...+| ++.++....+...
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~--- 329 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAPQRITWE--- 329 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCeEEeecC---
Confidence 988765 3344 588999988876555544455678899998742 33344344444444 6666554333111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC---ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEE
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK---GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYL 231 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 231 (551)
.......+|+|+|++|+..+.+ ..|.+||+.++....... ........|+|||++|
T Consensus 330 ------------------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i 388 (429)
T PRK03629 330 ------------------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMV 388 (429)
T ss_pred ------------------CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEE
Confidence 0134568899999998876543 368899999887644331 1223467899999999
Q ss_pred EEeeCCCe---EEEEe
Q 008844 232 LTNSNDRT---IRIYD 244 (551)
Q Consensus 232 ~t~s~Dg~---i~iwd 244 (551)
+.++.++. +.+++
T Consensus 389 ~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 389 IYSSSQGMGSVLNLVS 404 (429)
T ss_pred EEEEcCCCceEEEEEE
Confidence 99888765 45555
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=1.1e-13 Score=122.51 Aligned_cols=153 Identities=16% Similarity=0.264 Sum_probs=108.6
Q ss_pred ceEEEEeeCCCEEEEEec----------CceEEEEECCCC-cEEEeeeccCccceEEEEEeeCCCEEEEe--eCCCeEEE
Q 008844 176 PTAACFNKYGDLVYVGNS----------KGEILVIDHKSN-QIRALVPVSGAAVIKNIVFSRNGQYLLTN--SNDRTIRI 242 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~----------dg~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~t~--s~Dg~i~i 242 (551)
-..+.|++.|.+|++-.. -|...+|.++.. .....+.....++|.+++|+|+|..|++. ..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 346889999988776443 234555555332 23444443556679999999999987654 45789999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
||+. ...+..+. ...++ .+.|||+|++|++++..+..|.|.+|
T Consensus 88 yd~~------------------------------~~~i~~~~--~~~~n-----~i~wsP~G~~l~~~g~~n~~G~l~~w 130 (194)
T PF08662_consen 88 YDVK------------------------------GKKIFSFG--TQPRN-----TISWSPDGRFLVLAGFGNLNGDLEFW 130 (194)
T ss_pred EcCc------------------------------ccEeEeec--CCCce-----EEEECCCCCEEEEEEccCCCcEEEEE
Confidence 9921 12222222 23333 78999999999999864435789999
Q ss_pred ecC-CceeEEEecCCCceEEEEEecCCCeEEEEcC------CCcEEEEecCC
Q 008844 323 DRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSL------TGWVYIWAKDY 367 (551)
Q Consensus 323 d~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~------dg~i~iW~~~~ 367 (551)
|.. .+.+.... ...++.++|+|+|++|+++.. |+.++||+...
T Consensus 131 d~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 131 DVRKKKKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ECCCCEEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 999 77777665 335789999999999999874 78899999864
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.59 E-value=9.3e-13 Score=133.40 Aligned_cols=236 Identities=14% Similarity=0.223 Sum_probs=156.6
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC---CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCC
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD---KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSS 121 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~ 121 (551)
..|.++|..... .+.+..+ ...+.+..|+|+|++|+.++.. ..|.+||+.++................|+|++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~--~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRS--REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecC--CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 358888886443 4445443 5678999999999999887653 479999999887655444445566788999864
Q ss_pred CCcEEEEeeCCC--CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-c--e
Q 008844 122 TPSLCLACPLSS--APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-G--E 196 (551)
Q Consensus 122 ~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-g--~ 196 (551)
. ++++...++ .+++|++.++....+... ........|+|+|+.|+..+.. | .
T Consensus 247 ~--l~~~~~~~~~~~i~~~d~~~~~~~~l~~~---------------------~~~~~~~~~s~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 247 K--LAVSLSKDGNPDIYVMDLDGKQLTRLTNG---------------------PGIDTEPSWSPDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred E--EEEEECCCCCccEEEEECCCCCEEECCCC---------------------CCCCCCEEECCCCCEEEEEECCCCCce
Confidence 2 444444444 588888887765433111 0123456899999988776543 2 6
Q ss_pred EEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC---eEEEEeCcCCccccchhhhhhhccCCCCCcceeee
Q 008844 197 ILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR---TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273 (551)
Q Consensus 197 i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (551)
|+++|+.+++..... .+...+..+.|+|+|++|+.++.++ .|.+|++..
T Consensus 304 iy~~d~~~~~~~~l~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-------------------------- 355 (417)
T TIGR02800 304 IYMMDADGGEVRRLT--FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-------------------------- 355 (417)
T ss_pred EEEEECCCCCEEEee--cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--------------------------
Confidence 888899887764443 3455677889999999999888765 677777211
Q ss_pred eccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEE
Q 008844 274 MVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAW 344 (551)
Q Consensus 274 ~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~ 344 (551)
.. ...+.... ... .++|+|+|++|+..+..++...+++.+..|.....+..+.+.+..++|
T Consensus 356 ---~~-~~~l~~~~-~~~-----~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 356 ---GG-ERVLTDTG-LDE-----SPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred ---CC-eEEccCCC-CCC-----CceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCCCcCCCCC
Confidence 11 11111111 112 568999999999988755455678877777666666655556666655
No 226
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.58 E-value=2.9e-12 Score=121.20 Aligned_cols=313 Identities=12% Similarity=0.140 Sum_probs=190.4
Q ss_pred ccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEE
Q 008844 5 IIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILV 84 (551)
Q Consensus 5 lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s 84 (551)
+|+..+...+..+.. ..-++..++|||.|++|++.... .|.+|....+..+..+. ...|..+.|+|.++||.+
T Consensus 16 f~~~~s~~~~~~~~~--~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~----~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 16 FWNSQSEVIHTRFES--ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR----HPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred eecCccccccccccc--cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee----cCCceecccCcccceeee
Confidence 344444433333332 34678899999999999987654 49999988776555553 367999999999999998
Q ss_pred EeCC---------------CCEEEEEcCCCeEEEEEEcCCCe---e-EEEEecCCCCCcEEEEeeCCCCcEEEEcCCC--
Q 008844 85 SAAD---------------KSLTLWDVLKGEKITRIVLQQTP---L-QARLHPGSSTPSLCLACPLSSAPMIVDLSTG-- 143 (551)
Q Consensus 85 ~s~d---------------g~i~vwd~~~~~~~~~~~~~~~~---~-~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~-- 143 (551)
=+.. ..+.+||..+|..+..+...... . .+.|+-+.. +++--....+.++++...
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~----y~ARvv~~sl~i~e~t~n~~ 164 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK----YVARVVGSSLYIHEITDNIE 164 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch----hhhhhccCeEEEEecCCccc
Confidence 6543 34999999999888877654432 1 344444332 111113334445543110
Q ss_pred -------c-eeeeccccCCCCC--C---------CCCCCCCCCCCC---------CCCCCceEEEEeeCCCEEEEEe---
Q 008844 144 -------S-TSILPIAVPDVAN--G---------IAPSSRNKYSDG---------TPPFTPTAACFNKYGDLVYVGN--- 192 (551)
Q Consensus 144 -------~-~~~~~~~~~~~~~--~---------~~~~~~~~~~~~---------~~~~~i~~~~~s~~g~~l~~g~--- 192 (551)
+ ............+ . -.++........ --...-..+.|++.|++|++-.
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 0 0000000000000 0 000000000000 0000224577888888776531
Q ss_pred --------cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee--CCCeEEEEeCcCCccccchhhhhhhcc
Q 008844 193 --------SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS--NDRTIRIYDNLLPLKNGLEALVDIEKG 262 (551)
Q Consensus 193 --------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (551)
....++|++++...+.... ...++|...+|.|.++.+++.+ .+..+.++|+..
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--------------- 307 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--------------- 307 (561)
T ss_pred eecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeeccccc---------------
Confidence 1246888888855443333 4578999999999988776654 678888998211
Q ss_pred CCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCc--eeEEEecCCCceE
Q 008844 263 IAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGY--LVKILEGPKEALI 340 (551)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~--~~~~l~~h~~~v~ 340 (551)
. ..+...+..-+ .+.|||.++|++.++.++-.|.|-||+..++ ++..+.+. ...
T Consensus 308 ---------------N--l~~~~Pe~~rN-----T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s 363 (561)
T COG5354 308 ---------------N--LRFYFPEQKRN-----TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTS 363 (561)
T ss_pred ---------------c--eEEecCCcccc-----cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--Cce
Confidence 1 12222333333 6789999999999888666789999999944 33345543 456
Q ss_pred EEEEecCCCeEEEEcC------CCcEEEEecCCCC
Q 008844 341 DLAWHPVHPIIVSVSL------TGWVYIWAKDYTE 369 (551)
Q Consensus 341 ~l~~sp~~~~l~s~s~------dg~i~iW~~~~~~ 369 (551)
.+.|+|++.++.+... |..|.||++....
T Consensus 364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 6789999998877643 7889999998754
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4.5e-13 Score=135.42 Aligned_cols=211 Identities=16% Similarity=0.157 Sum_probs=138.1
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD---GSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
+|.+||.. +..+..+.. +...+.+.+|+|||+.|+..+.. ..|++|++.++.... +... .+...++.|+|+
T Consensus 185 ~l~i~D~~-g~~~~~lt~--~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~--~g~~~~~~~SpD 258 (433)
T PRK04922 185 ALQVADSD-GYNPQTILR--SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASF--RGINGAPSFSPD 258 (433)
T ss_pred EEEEECCC-CCCceEeec--CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC--CCCccCceECCC
Confidence 36677764 334444443 56678999999999999987643 469999998776533 3222 344568899999
Q ss_pred CCEEE-EEeCCC--CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCC--cEEEEcCCCceeeeccccC
Q 008844 79 GHRIL-VSAADK--SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSA--PMIVDLSTGSTSILPIAVP 153 (551)
Q Consensus 79 g~~l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~ 153 (551)
|+.|+ +.+.++ .|.+||+.++................|+|++. .++++....+. ++++++.++....+...
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-- 334 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAERLTFQ-- 334 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEeecC--
Confidence 98775 445555 59999998887544333223345678999864 23334434444 55666666654433211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc---eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCE
Q 008844 154 DVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG---EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQY 230 (551)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 230 (551)
. ......+|+|+|++|+..+.++ .|.+||+.+++..... +........|+|+|++
T Consensus 335 g-------------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt---~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 335 G-------------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT---PGSLDESPSFAPNGSM 392 (433)
T ss_pred C-------------------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC---CCCCCCCceECCCCCE
Confidence 0 0334689999999998765443 6999999888765332 3334456799999998
Q ss_pred EEEeeCC---CeEEEEe
Q 008844 231 LLTNSND---RTIRIYD 244 (551)
Q Consensus 231 l~t~s~D---g~i~iwd 244 (551)
|+..+.+ +.|.+++
T Consensus 393 i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 393 VLYATREGGRGVLAAVS 409 (433)
T ss_pred EEEEEecCCceEEEEEE
Confidence 8776653 3466666
No 228
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.8e-12 Score=130.97 Aligned_cols=240 Identities=13% Similarity=0.196 Sum_probs=153.6
Q ss_pred eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC-CC--CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCC
Q 008844 46 SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA-DK--SLTLWDVLKGEKITRIVLQQTPLQARLHPGSST 122 (551)
Q Consensus 46 ~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~ 122 (551)
.|.++|...... +.+... ...+.+..|+|||+.|+..+. ++ .|.+||+.+++...............|+|++..
T Consensus 199 ~l~i~d~dG~~~-~~l~~~--~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRS--PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecC--CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCE
Confidence 677778765443 344433 678999999999998887654 22 588889988875443333333456789998753
Q ss_pred CcEEEEeeCCCC--cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-C--ceE
Q 008844 123 PSLCLACPLSSA--PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-K--GEI 197 (551)
Q Consensus 123 ~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-d--g~i 197 (551)
++++...++. |+++|+.++....+... .......+|+|+|+.|+..+. + ..|
T Consensus 276 --La~~~~~~g~~~Iy~~dl~tg~~~~lt~~---------------------~~~~~~p~wSpDG~~I~f~s~~~g~~~I 332 (448)
T PRK04792 276 --LALVLSKDGQPEIYVVDIATKALTRITRH---------------------RAIDTEPSWHPDGKSLIFTSERGGKPQI 332 (448)
T ss_pred --EEEEEeCCCCeEEEEEECCCCCeEECccC---------------------CCCccceEECCCCCEEEEEECCCCCceE
Confidence 4455555664 77778877765433211 113456789999998876654 3 357
Q ss_pred EEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeecc
Q 008844 198 LVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVG 276 (551)
Q Consensus 198 ~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (551)
+++|+.+++..... .........+|+|+|++|+..+. ++..+||-+. ..+
T Consensus 333 y~~dl~~g~~~~Lt--~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d---------------------------l~~ 383 (448)
T PRK04792 333 YRVNLASGKVSRLT--FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQD---------------------------LET 383 (448)
T ss_pred EEEECCCCCEEEEe--cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEE---------------------------CCC
Confidence 78888888764433 12223345789999999877655 4444554310 111
Q ss_pred ceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecC
Q 008844 277 SKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPV 347 (551)
Q Consensus 277 ~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~ 347 (551)
+. ...+.... ... ...|+|+|++|+..+...+...|++++..|.....+..+.+.+...+|+|-
T Consensus 384 g~-~~~lt~~~-~d~-----~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 384 GA-MQVLTSTR-LDE-----SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CC-eEEccCCC-CCC-----CceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 11 11111111 111 458999999998887754455688888887777778777777888899873
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=8.3e-12 Score=111.45 Aligned_cols=179 Identities=21% Similarity=0.240 Sum_probs=134.5
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC-CCeEEEEEEcCCCee-EEEEecCCCC
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVL-KGEKITRIVLQQTPL-QARLHPGSST 122 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~p~~~~ 122 (551)
..|.|||=....++.++.. ..+|.++.+.++ .|++.- .+.|.||.+. +-+.++.+.....+. -+++.|....
T Consensus 75 NkviIWDD~k~~~i~el~f---~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF---NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccCcEEEEEEe---ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 4699999777778888865 589999999864 555554 6789999997 456666665554333 3445555443
Q ss_pred CcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCce-EEEEE
Q 008844 123 PSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGE-ILVID 201 (551)
Q Consensus 123 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~-i~i~d 201 (551)
..++.-+-.-|+++|.|+...... .......|...|.|++++.+|.++|+++..|+ |+|||
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPN------------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD 210 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcC------------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence 333333455688999998776542 01112345559999999999999999999998 79999
Q ss_pred CCCCcEEEeeeccC-ccceEEEEEeeCCCEEEEeeCCCeEEEEeCcC
Q 008844 202 HKSNQIRALVPVSG-AAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLL 247 (551)
Q Consensus 202 ~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~ 247 (551)
..++..+..+..+. ...|.+|+|||+..+|+++|.-|+|+||.+..
T Consensus 211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99999988886433 57899999999999999999999999998443
No 230
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.5e-12 Score=111.72 Aligned_cols=239 Identities=15% Similarity=0.218 Sum_probs=160.3
Q ss_pred eeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce------eeEeecccc-----cccEEEEEecCCCCEEEE
Q 008844 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI------AKELRDKEC-----VAAITSVCWSKYGHRILV 84 (551)
Q Consensus 16 ~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~------~~~~~~~~h-----~~~V~~l~~s~~g~~l~s 84 (551)
.+....|.++|+.++|. ..+|++|+ ||.|+-|....... +..+....| --.|++|...|..+.|++
T Consensus 55 iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~ 131 (325)
T KOG0649|consen 55 IVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF 131 (325)
T ss_pred eeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE
Confidence 33445688999999998 34677765 69999998754221 111111111 246899999998888888
Q ss_pred EeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCC
Q 008844 85 SAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSR 164 (551)
Q Consensus 85 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (551)
++.|+.+.-||+++|+....+++|.+
T Consensus 132 AgGD~~~y~~dlE~G~i~r~~rGHtD------------------------------------------------------ 157 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRIQREYRGHTD------------------------------------------------------ 157 (325)
T ss_pred ecCCeEEEEEEecCCEEEEEEcCCcc------------------------------------------------------
Confidence 88999999999999999999998875
Q ss_pred CCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc--------C-ccceEEEEEeeCCCEEEEee
Q 008844 165 NKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS--------G-AAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--------~-~~~i~~l~~s~~g~~l~t~s 235 (551)
.+.+++--.....|++|+.||+++|||.++++.+.++... | ...|.+++. +..+|++|
T Consensus 158 ----------YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCG- 224 (325)
T KOG0649|consen 158 ----------YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCG- 224 (325)
T ss_pred ----------eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEec-
Confidence 3444444333446999999999999999999998877431 1 234555555 44577766
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKG 315 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~ 315 (551)
....+.+|.+.. ....++..+..+ +. .+.|- ...+++++.
T Consensus 225 gGp~lslwhLrs---------------------------se~t~vfpipa~---v~-----~v~F~--~d~vl~~G~--- 264 (325)
T KOG0649|consen 225 GGPKLSLWHLRS---------------------------SESTCVFPIPAR---VH-----LVDFV--DDCVLIGGE--- 264 (325)
T ss_pred CCCceeEEeccC---------------------------CCceEEEecccc---ee-----Eeeee--cceEEEecc---
Confidence 556789999221 112333333333 32 44553 356677776
Q ss_pred cceEEEEecCCceeEEEecCCCceEEEEEecCC-CeEEEEcCCCcEEEEe
Q 008844 316 EHKIYIWDRAGYLVKILEGPKEALIDLAWHPVH-PIIVSVSLTGWVYIWA 364 (551)
Q Consensus 316 dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iW~ 364 (551)
.+.|.-|.+.|.+-..+.+.....++..|+-.- ++|-.++..+.+.|+.
T Consensus 265 g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 265 GNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 578999999888777777666667777775433 3566667777777764
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=6.2e-13 Score=117.84 Aligned_cols=147 Identities=18% Similarity=0.313 Sum_probs=107.5
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeccC-CceeeEeecccccccEEEEEecCCCCEEEEE--eCCCCEEE
Q 008844 27 KCIAFNRRGTLLAAGCS----------DGSCVIWDFET-RGIAKELRDKECVAAITSVCWSKYGHRILVS--AADKSLTL 93 (551)
Q Consensus 27 ~~l~fs~dg~~latg~~----------dg~I~iwd~~~-~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~--s~dg~i~v 93 (551)
..+.|+++|++|++-.. -|...||.+.. +.....+... ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 35789999998775433 23466666632 3344444432 24579999999999987654 35779999
Q ss_pred EEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 94 WDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
||++ ++.+..+.. .
T Consensus 88 yd~~-~~~i~~~~~--~--------------------------------------------------------------- 101 (194)
T PF08662_consen 88 YDVK-GKKIFSFGT--Q--------------------------------------------------------------- 101 (194)
T ss_pred EcCc-ccEeEeecC--C---------------------------------------------------------------
Confidence 9985 444443321 0
Q ss_pred CCceEEEEeeCCCEEEEEec---CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC------CCeEEEEe
Q 008844 174 FTPTAACFNKYGDLVYVGNS---KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN------DRTIRIYD 244 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~------Dg~i~iwd 244 (551)
.+..+.|+|+|++|++|+. .|.|.+||+++.+.+... .|. .++.++|+|+|++|++++. |+.++||+
T Consensus 102 -~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 102 -PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred -CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 5678999999999999864 478999999988888776 343 4789999999999998864 78899998
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=3.8e-12 Score=129.10 Aligned_cols=238 Identities=14% Similarity=0.191 Sum_probs=154.8
Q ss_pred eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC---CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCC
Q 008844 46 SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD---KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSST 122 (551)
Q Consensus 46 ~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~ 122 (551)
.|.++|...+.. +.+..+ ...+.+..|+|+|+.|+..+.+ ..|.+|++.++................|+|++..
T Consensus 180 ~l~~~d~~g~~~-~~l~~~--~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQS--REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecC--CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCE
Confidence 488888875543 444433 6789999999999999877643 3689999988876544333334456889998752
Q ss_pred CcEEEEeeCCC--CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-C--ceE
Q 008844 123 PSLCLACPLSS--APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-K--GEI 197 (551)
Q Consensus 123 ~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-d--g~i 197 (551)
++++...++ .++++|+.++....+.. +........|+|+|+.|+..+. + ..|
T Consensus 257 --la~~~~~~g~~~Iy~~d~~~~~~~~lt~---------------------~~~~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 257 --LAFVLSKDGNPEIYVMDLASRQLSRVTN---------------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred --EEEEEccCCCceEEEEECCCCCeEEccc---------------------CCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 444454444 57778888876543311 0013455789999988776654 3 368
Q ss_pred EEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC-C--eEEEEeCcCCccccchhhhhhhccCCCCCcceeeee
Q 008844 198 LVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND-R--TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKM 274 (551)
Q Consensus 198 ~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (551)
+++++.+++...... .........|+|+|++|+..+.. + .|.+||+..
T Consensus 314 y~~d~~~g~~~~lt~--~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--------------------------- 364 (430)
T PRK00178 314 YKVNVNGGRAERVTF--VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--------------------------- 364 (430)
T ss_pred EEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEEccCCceEEEEEECCC---------------------------
Confidence 888988887644331 22334457899999998877653 3 466777211
Q ss_pred ccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecC
Q 008844 275 VGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPV 347 (551)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~ 347 (551)
+. ...+.. ..... ...|+|+|++|+..+...+...|+++++.|.....+..+.+.+...+|+|-
T Consensus 365 --g~-~~~lt~-~~~~~-----~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 365 --GS-VRILTD-TSLDE-----SPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred --CC-EEEccC-CCCCC-----CceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 11 111211 11111 458999999999888754456788888886666666666677888888874
No 233
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=2.2e-13 Score=118.12 Aligned_cols=265 Identities=15% Similarity=0.171 Sum_probs=171.5
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC----
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY---- 78 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~---- 78 (551)
|.+|+..+..-.-.+ ...|...|+.+..-|+ ..|.+-+.|+.+.+|++.-+..+.. | .-.++++.|.+-
T Consensus 37 V~~w~lqt~r~~~~~-r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~--Si~~nslgFCrfSl~~ 109 (323)
T KOG0322|consen 37 VKMWVLQTERDLPLI-RLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---H--SIVVNSLGFCRFSLVK 109 (323)
T ss_pred EEEEEeecCccchhh-hhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---e--eeeccccccccceecc
Confidence 456766655433333 3336678888888887 4577778999999999986554322 2 445556666542
Q ss_pred -C----CEEEEEeCCCC-EEEEEcCCCeEEEEEEcC-------CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 79 -G----HRILVSAADKS-LTLWDVLKGEKITRIVLQ-------QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 79 -g----~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~-------~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
+ ..++.-+.... +.+-|. +......... ..+.+..+........+++++..+|.+.+||+.++..
T Consensus 110 ~~k~~eqll~yp~rgsde~h~~D~--g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~ 187 (323)
T KOG0322|consen 110 KPKNSEQLLEYPSRGSDETHKQDG--GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK 187 (323)
T ss_pred CCCcchhheecCCcccchhhhhcc--CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence 1 11221111000 111121 2222111111 1233334333334456788899999999999999854
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC--cE--EEeeeccCccceEE
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN--QI--RALVPVSGAAVIKN 221 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~--~~--~~~~~~~~~~~i~~ 221 (551)
+......+.. ......|..++.++.|.+.-..=++|+.+-.+..|.+... .+ ..... .....|..
T Consensus 188 ~~~~~~~~kv----------~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~-lknpGv~g 256 (323)
T KOG0322|consen 188 IIQLPQSSKV----------ESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT-LKNPGVSG 256 (323)
T ss_pred eecccccccc----------ccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE-ecCCCccc
Confidence 4332222211 1223345558999999877666778888888888887643 22 11222 23456888
Q ss_pred EEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 222 IVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 222 l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
+.+-||++.|||++.|+.||||. ......+..++-|.+.++ +++|+
T Consensus 257 vrIRpD~KIlATAGWD~RiRVys-----------------------------wrtl~pLAVLkyHsagvn-----~vAfs 302 (323)
T KOG0322|consen 257 VRIRPDGKILATAGWDHRIRVYS-----------------------------WRTLNPLAVLKYHSAGVN-----AVAFS 302 (323)
T ss_pred eEEccCCcEEeecccCCcEEEEE-----------------------------eccCCchhhhhhhhccee-----EEEeC
Confidence 99999999999999999999998 334667888999999998 99999
Q ss_pred CCCCEEEEeeccCCcceEEEEec
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDR 324 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~ 324 (551)
|+...+|+++. |+.|.+|++
T Consensus 303 pd~~lmAaask---D~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASK---DARISLWKL 322 (323)
T ss_pred CCCchhhhccC---CceEEeeec
Confidence 99999999999 999999986
No 234
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=1.3e-14 Score=144.08 Aligned_cols=252 Identities=12% Similarity=0.096 Sum_probs=173.6
Q ss_pred CCccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 1 MNAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 1 mnl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
|-+.||...++.....+.. |.+.|+.++.+.+..++|+++.|..|++|.+.++..+..+.+| ++.|++|+|+|-.
T Consensus 212 ~lvKiwS~et~~~lAs~rG--hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh--tgavtaiafsP~~- 286 (1113)
T KOG0644|consen 212 RLVKIWSMETARCLASCRG--HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH--TGAVTAIAFSPRA- 286 (1113)
T ss_pred ceeeeeeccchhhhccCCC--CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcc--ccceeeeccCccc-
Confidence 4578999888887777766 8999999999999999999999999999999999999999877 9999999999943
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEE-----EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITR-----IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDV 155 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 155 (551)
+.+.||++++||.+-.-.+.. +....-...+.|... ...+++++.++.-..|.+..-.....
T Consensus 287 ---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~---~~~f~Tgs~d~ea~n~e~~~l~~~~~------- 353 (1113)
T KOG0644|consen 287 ---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN---GDRFLTGSRDGEARNHEFEQLAWRSN------- 353 (1113)
T ss_pred ---cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc---ccccccccCCcccccchhhHhhhhcc-------
Confidence 777899999999871111111 000111222222222 22456666666555554432221110
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC-CEEEE
Q 008844 156 ANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG-QYLLT 233 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~t 233 (551)
.+..+.++.+- .+.+++-.+-.+++|++.++.....+. .|...+..+.++|-. +...+
T Consensus 354 -------------------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 354 -------------------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred -------------------ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhhh
Confidence 11111111111 455666677889999999998877765 889999999999954 55678
Q ss_pred eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEcCCCCEEEEeec
Q 008844 234 NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFSGDGEWVIAGSA 312 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s~dg~~l~~gs~ 312 (551)
++.||.+.|||+-. +..++.. .+|...+ ..+||++|..++....
T Consensus 414 ag~dgst~iwdi~e-----------------------------g~pik~y~~gh~kl~------d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWE-----------------------------GIPIKHYFIGHGKLV------DGKFSQDGTSIALSDD 458 (1113)
T ss_pred ccCCCceEeeeccc-----------------------------CCcceeeecccceee------ccccCCCCceEecCCC
Confidence 89999999999221 2222222 2333333 6799999999999887
Q ss_pred cCCcceEEEEecC-Cce
Q 008844 313 SKGEHKIYIWDRA-GYL 328 (551)
Q Consensus 313 ~~~dg~I~iwd~~-~~~ 328 (551)
-|.++|.... ++.
T Consensus 459 ---hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 459 ---HGQLYILGTGQSKS 472 (1113)
T ss_pred ---CCceEEeccCCCcc
Confidence 7899999876 443
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=8.1e-11 Score=115.15 Aligned_cols=270 Identities=14% Similarity=0.196 Sum_probs=168.5
Q ss_pred ccceEEEEEEcCCCCEEEEEeC----CCeEEEEeccCC--ce--eeEeecccccccEEEEEecCCCCEEEEEeC-CCCEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCS----DGSCVIWDFETR--GI--AKELRDKECVAAITSVCWSKYGHRILVSAA-DKSLT 92 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~----dg~I~iwd~~~~--~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~ 92 (551)
.......|+++|++++|++... .|.|..|.+... .+ +...... ......++++|++++|+++.. +|+|.
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~--g~~p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG--GSSPCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES--SSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC--CCCcEEEEEecCCCEEEEEEccCCeEE
Confidence 3455678999999999999876 578999998764 32 2222222 456678999999999999986 89999
Q ss_pred EEEcCC-CeEEEE---EE-----------cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc--eeeeccccCCC
Q 008844 93 LWDVLK-GEKITR---IV-----------LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS--TSILPIAVPDV 155 (551)
Q Consensus 93 vwd~~~-~~~~~~---~~-----------~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~ 155 (551)
++++.. |..... +. ....+..+.++|++. .++++......|.+|++.... ..........
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~--~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~- 189 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR--FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP- 189 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS--EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS-
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC--EEEEEecCCCEEEEEEEeCCCceEEEeeccccc-
Confidence 999987 443332 21 123367889999864 355666667789999998766 2221110001
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECC--CCcE--EEeeec---c--CccceEEEEEe
Q 008844 156 ANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHK--SNQI--RALVPV---S--GAAVIKNIVFS 225 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~--~~~~--~~~~~~---~--~~~~i~~l~~s 225 (551)
....+..++|+|+++++++.. .++.|.+|++. ++.. +..+.. . .......|+++
T Consensus 190 ----------------~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 190 ----------------PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp ----------------TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred ----------------cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 112678999999999887765 47889999988 4433 222221 1 12257889999
Q ss_pred eCCCEEEEee-CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC
Q 008844 226 RNGQYLLTNS-NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG 304 (551)
Q Consensus 226 ~~g~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg 304 (551)
|+|++|+++. ..+.|.+|++ .+..+. ...+..+....... ..++++|+|
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~-d~~~g~------------------------l~~~~~~~~~G~~P-----r~~~~s~~g 303 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDL-DPATGT------------------------LTLVQTVPTGGKFP-----RHFAFSPDG 303 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEE-CTTTTT------------------------EEEEEEEEESSSSE-----EEEEE-TTS
T ss_pred cCCCEEEEEeccCCEEEEEEE-ecCCCc------------------------eEEEEEEeCCCCCc-----cEEEEeCCC
Confidence 9999987765 4788999992 111000 01111111111111 278999999
Q ss_pred CEEEEeeccCCcceEEEEecC---CceeEEEe-cCCCceEEEEE
Q 008844 305 EWVIAGSASKGEHKIYIWDRA---GYLVKILE-GPKEALIDLAW 344 (551)
Q Consensus 305 ~~l~~gs~~~~dg~I~iwd~~---~~~~~~l~-~h~~~v~~l~~ 344 (551)
++|+++... ++.|.+|++. |.+...-. ..-....||.|
T Consensus 304 ~~l~Va~~~--s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 304 RYLYVANQD--SNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp SEEEEEETT--TTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CEEEEEecC--CCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 999999874 6789999875 55444332 12344566655
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.7e-12 Score=130.71 Aligned_cols=204 Identities=18% Similarity=0.236 Sum_probs=131.6
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD---GSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
+|.++|. .+..++.+.. +...+.+.+|+|||+.|+..+.. ..|.+||+.+++... +... ...+.+..|+||
T Consensus 177 ~L~~~D~-dG~~~~~l~~--~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~--~g~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDA-DGQNAQSALS--SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF--KGSNSAPAWSPD 250 (427)
T ss_pred EEEEECC-CCCCceEecc--CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC--CCCccceEECCC
Confidence 3455565 3433444433 56788999999999999887643 459999999887543 3222 345678999999
Q ss_pred CCEEE-EEeCCCCEEEEEc--CCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEc--CCCceeeecccc
Q 008844 79 GHRIL-VSAADKSLTLWDV--LKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDL--STGSTSILPIAV 152 (551)
Q Consensus 79 g~~l~-s~s~dg~i~vwd~--~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~--~~~~~~~~~~~~ 152 (551)
|+.|+ +.+.++...||.+ ..+. ...+..+. ......|+|++.. +++++...+...+|.+ .++....+...
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~- 326 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQIYRMPASGGAAQRVTFT- 326 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcEEEEEECCCCceEEEecC-
Confidence 98886 4567887666654 4444 33333322 3456789998752 3444444566666655 44433322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc---eEEEEECCCCcEEEeeeccCccceEEEEEeeCCC
Q 008844 153 PDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG---EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQ 229 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 229 (551)
. ......+|+|+|++|+..+.++ .|.+||+.+++..... .........|+|+|+
T Consensus 327 -g-------------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt---~~~~~~~p~~spdg~ 383 (427)
T PRK02889 327 -G-------------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT---DTTRDESPSFAPNGR 383 (427)
T ss_pred -C-------------------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc---CCCCccCceECCCCC
Confidence 0 0233568999999998776554 6999999988765443 223346789999999
Q ss_pred EEEEeeCCC
Q 008844 230 YLLTNSNDR 238 (551)
Q Consensus 230 ~l~t~s~Dg 238 (551)
+|+.++.++
T Consensus 384 ~l~~~~~~~ 392 (427)
T PRK02889 384 YILYATQQG 392 (427)
T ss_pred EEEEEEecC
Confidence 988877644
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.5e-12 Score=127.71 Aligned_cols=219 Identities=18% Similarity=0.186 Sum_probs=139.9
Q ss_pred CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEee--CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACP--LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 89 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
..|.+||...............+....|+|++.. ++++.. .+..+++|++.++....+..
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~--lay~s~~~g~~~i~~~dl~~g~~~~l~~---------------- 243 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQE--ITYMSYANGRPRVYLLDLETGQRELVGN---------------- 243 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCE--EEEEEecCCCCEEEEEECCCCcEEEeec----------------
Confidence 3788889755444333344457889999998752 223222 34679999998887644311
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEE-EecCc--eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-CC--eE
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYV-GNSKG--EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-DR--TI 240 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~-g~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-Dg--~i 240 (551)
....+.+.+|+|+|+.|+. .+.+| .|++||+.++...... .+........|+|+|+.|+..+. +| .|
T Consensus 244 -----~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt--~~~~~~~~~~~spDG~~i~f~s~~~g~~~I 316 (435)
T PRK05137 244 -----FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLT--DSPAIDTSPSYSPDGSQIVFESDRSGSPQL 316 (435)
T ss_pred -----CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEcc--CCCCccCceeEcCCCCEEEEEECCCCCCeE
Confidence 0114567899999987764 44444 4888899988765543 45556677999999998887764 34 46
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
++|++. +.. ...+......+. .+.|||+|++|+......+...|+
T Consensus 317 y~~d~~-----------------------------g~~-~~~lt~~~~~~~-----~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 317 YVMNAD-----------------------------GSN-PRRISFGGGRYS-----TPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred EEEECC-----------------------------CCC-eEEeecCCCccc-----CeEECCCCCEEEEEEcCCCceEEE
Confidence 666611 111 122222222232 678999999999887643346799
Q ss_pred EEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCC------CcEEEEecCCC
Q 008844 321 IWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLT------GWVYIWAKDYT 368 (551)
Q Consensus 321 iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~d------g~i~iW~~~~~ 368 (551)
+|++.+.....+.. ...+..+.|+|++++|+..+.+ ..|+++++...
T Consensus 362 ~~d~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 362 VMKPDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EEECCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 99987433444432 3357789999999988766542 24667776543
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.52 E-value=3.2e-12 Score=132.58 Aligned_cols=271 Identities=10% Similarity=0.084 Sum_probs=171.8
Q ss_pred EeccCCceeeEeecccccccEEEEEecCCC-CEEEEEeCCCCEEEEEcCCC-------eEEEEEE-cCCCeeEEEEecCC
Q 008844 50 WDFETRGIAKELRDKECVAAITSVCWSKYG-HRILVSAADKSLTLWDVLKG-------EKITRIV-LQQTPLQARLHPGS 120 (551)
Q Consensus 50 wd~~~~~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~-------~~~~~~~-~~~~~~~~~~~p~~ 120 (551)
|... |..+..+ |.|...|..++.++.. .+++|||.||+|++|+++.- +...++. ....+..+...+.+
T Consensus 1034 W~p~-G~lVAhL--~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPR-GILVAHL--HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCcc-ceEeehh--hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 5443 5666666 4558888899888765 89999999999999998531 1222333 33455666666654
Q ss_pred CCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC-C-CEEEEEecCceEE
Q 008844 121 STPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY-G-DLVYVGNSKGEIL 198 (551)
Q Consensus 121 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g-~~l~~g~~dg~i~ 198 (551)
. .++.++.||.|.+..+............. .+......+..+..-+|... + ..++.++..+.|.
T Consensus 1111 ~---~~Av~t~DG~v~~~~id~~~~~~~~~~~~-----------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1111 D---QFAVSTKDGSVRVLRIDHYNVSKRVATQV-----------RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred C---eEEEEcCCCeEEEEEccccccccceeeee-----------ecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 3 67777999999999887732111110000 00000111113333444332 2 3788889999999
Q ss_pred EEECCCCcEEEeeec-cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccc
Q 008844 199 VIDHKSNQIRALVPV-SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGS 277 (551)
Q Consensus 199 i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (551)
.||+++......++. ...+.|++++.+|.+.++++|+..|.+-+||++-. .
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~----------------------------~ 1228 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR----------------------------V 1228 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC----------------------------c
Confidence 999998877555532 33588999999999999999999999999993321 0
Q ss_pred eeeeeecccccccceeeeeeeEEcC---CCCEEEEeeccCCcceEEEEecC-CceeEEEecC------------------
Q 008844 278 KCLALFREFQDSITKMHWKAPCFSG---DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGP------------------ 335 (551)
Q Consensus 278 ~~~~~~~~~~~~v~~~~~~~~~~s~---dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h------------------ 335 (551)
........+..++. .++..| ...++++++... .+.|.+|++. |.+...+...
T Consensus 1229 ~i~sw~~P~~~~i~-----~v~~~~~~~~~S~~vs~~~~~-~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp 1302 (1431)
T KOG1240|consen 1229 PILSWEHPARAPIR-----HVWLCPTYPQESVSVSAGSSS-NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKP 1302 (1431)
T ss_pred eeecccCcccCCcc-----eEEeeccCCCCceEEEecccC-CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCC
Confidence 11111223334444 333333 345555555422 6889999999 6555554332
Q ss_pred -CCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 336 -KEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 336 -~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
.-......+...+.++.+++.|..|+.||...++.-
T Consensus 1303 ~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1303 DSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 111223344445668999999999999999987754
No 239
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.5e-13 Score=128.15 Aligned_cols=220 Identities=19% Similarity=0.307 Sum_probs=145.7
Q ss_pred eEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC--CeeEEEEecCCCCCcEEEEeeCCCCcE
Q 008844 59 KELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ--TPLQARLHPGSSTPSLCLACPLSSAPM 136 (551)
Q Consensus 59 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~i~ 136 (551)
+.+.+| .+.|+||.|+.+|.+|++|+.|-.+.|||.-.-+++..+...+ .++++.|.|..
T Consensus 44 ~eL~GH--~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t---------------- 105 (758)
T KOG1310|consen 44 AELTGH--TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT---------------- 105 (758)
T ss_pred hhhccc--cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC----------------
Confidence 445554 9999999999999999999999999999998777777665433 34455555432
Q ss_pred EEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCc----------
Q 008844 137 IVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQ---------- 206 (551)
Q Consensus 137 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~---------- 206 (551)
+.+++++|..|..|+++|+...+
T Consensus 106 -----------------------------------------------nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~ 138 (758)
T KOG1310|consen 106 -----------------------------------------------NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE 138 (758)
T ss_pred -----------------------------------------------CCeEEEeccCcceEEEEecccccccccccCccc
Confidence 23577888888888888887421
Q ss_pred EEEeeeccCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc
Q 008844 207 IRALVPVSGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE 285 (551)
Q Consensus 207 ~~~~~~~~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (551)
....+. .|...|..|+..|++ ..+.+++.||+|+-+|++-|..-... ..+...+..
T Consensus 139 ~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~----------------------~~~~~~l~n 195 (758)
T KOG1310|consen 139 TTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD----------------------EDCPSILVN 195 (758)
T ss_pred hhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc----------------------ccccHHHHH
Confidence 122222 678889999999998 67899999999999995544211100 001111111
Q ss_pred cccccceeeeeeeEEcCC-CCEEEEeeccCCcceEEEEecC---------Cc----------eeEEE-ecCC--------
Q 008844 286 FQDSITKMHWKAPCFSGD-GEWVIAGSASKGEHKIYIWDRA---------GY----------LVKIL-EGPK-------- 336 (551)
Q Consensus 286 ~~~~v~~~~~~~~~~s~d-g~~l~~gs~~~~dg~I~iwd~~---------~~----------~~~~l-~~h~-------- 336 (551)
.... .+...++.++|. ..|||+|+. +-..++||++ +. ++..+ .+|.
T Consensus 196 y~~~--lielk~ltisp~rp~~laVGgs---dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 196 YNPQ--LIELKCLTISPSRPYYLAVGGS---DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred hchh--hheeeeeeecCCCCceEEecCC---CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 1110 022348889994 567888888 8899999943 11 12222 1222
Q ss_pred ---CceEEEEEecCCCe-EEEEcCCCcEEEEecCCCCcce
Q 008844 337 ---EALIDLAWHPVHPI-IVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 337 ---~~v~~l~~sp~~~~-l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
..++.+.|+|+|.- |++-+ .-.|+++++...+...
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~-gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWG-GEHVYLFDVNEDKSPT 309 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeC-CeEEEEEeecCCCCce
Confidence 12677899999984 44444 5589999998876443
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.6e-12 Score=119.04 Aligned_cols=196 Identities=15% Similarity=0.180 Sum_probs=150.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc----eeeEeecccccccEEEEEecCCCCE-EEEEeCC--CCEEEEEc
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG----IAKELRDKECVAAITSVCWSKYGHR-ILVSAAD--KSLTLWDV 96 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~----~~~~~~~~~h~~~V~~l~~s~~g~~-l~s~s~d--g~i~vwd~ 96 (551)
++|..++.. +| .|++|-.+|.+.+|....+- .+..+.. ..++..|.-++...+ +++|+.. ..+.|||+
T Consensus 106 ~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~---g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 106 KSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT---GPGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeec---CCceeeeccCCCCCceEecCchhcccceeeeec
Confidence 444444432 33 56777889999999987432 2233332 256777777775554 4558887 88999999
Q ss_pred CCCeEEEEEEc----------CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVL----------QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 97 ~~~~~~~~~~~----------~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
+..+.+..-.. +--+..+.|.+... +..++++..-+++++||.+.+......+.+...
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~----------- 248 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN----------- 248 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEeccccC-----------
Confidence 98866655432 22245677777633 668999999999999999988776665554432
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.++++...|.|++|++|...|.+..||+++++.......+..+.|++|..+|.+++|++++-|+.|||+|
T Consensus 249 --------~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 249 --------PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred --------cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 8999999999999999999999999999999997774447789999999999999999999999999999
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.7e-11 Score=116.19 Aligned_cols=294 Identities=14% Similarity=0.123 Sum_probs=192.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE-----eC-----CCCEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS-----AA-----DKSLTL 93 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-----s~-----dg~i~v 93 (551)
.+++..++|++|+++|.+. +..++|++..++..+.+.. ...+++|.|+|-|++|.+= .. .-.+.+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec----cceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 3467788999999999875 6789999998886444443 2378999999999998762 11 235779
Q ss_pred EEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 94 WDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
|++.++.....+.... ......|+++. .+++--..+.+++|++.........+...
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dE----sl~arlv~nev~f~~~~~f~~~~~kl~~~------------------- 166 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSIDE----SLAARLVSNEVQFYDLGSFKTIQHKLSVS------------------- 166 (566)
T ss_pred eeeccceehhheehhhhcCcccccccch----hhhhhhhcceEEEEecCCccceeeeeecc-------------------
Confidence 9999966555554432 23567777765 35555667789999988855444333322
Q ss_pred CCCceEEEEeeCC--CEEEE-----EecCceEEEEECCCCcEEEeeec--cCccceEEEEEeeCCCEEE-Eee--CCC--
Q 008844 173 PFTPTAACFNKYG--DLVYV-----GNSKGEILVIDHKSNQIRALVPV--SGAAVIKNIVFSRNGQYLL-TNS--NDR-- 238 (551)
Q Consensus 173 ~~~i~~~~~s~~g--~~l~~-----g~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~-t~s--~Dg-- 238 (551)
.++.+.++|.+ ..+++ ++.-+.|+||...-......+.. -....-..+.|++-|.-|+ ..+ -|.
T Consensus 167 --~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 167 --GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred --ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 78888888874 33443 34456799998763322111100 1122223477887766332 222 132
Q ss_pred -------eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEee
Q 008844 239 -------TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGS 311 (551)
Q Consensus 239 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs 311 (551)
++++++ ..+..+...+ .-.++|. +++|+|+|+-+++.-
T Consensus 245 ~SYYGEq~Lyll~-----------------------------t~g~s~~V~L-~k~GPVh-----dv~W~~s~~EF~Vvy 289 (566)
T KOG2315|consen 245 ASYYGEQTLYLLA-----------------------------TQGESVSVPL-LKEGPVH-----DVTWSPSGREFAVVY 289 (566)
T ss_pred ccccccceEEEEE-----------------------------ecCceEEEec-CCCCCce-----EEEECCCCCEEEEEE
Confidence 344444 1112222222 2245665 899999997655432
Q ss_pred ccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcC---CCcEEEEecCCCCcc----------eeecCCc
Q 008844 312 ASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSL---TGWVYIWAKDYTENW----------SAFAPDF 378 (551)
Q Consensus 312 ~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~---dg~i~iW~~~~~~~~----------~~~spd~ 378 (551)
.-. -..+.|||+++.++..+. .++=+++-|+|.|++|+.+|. -|.|-|||+.+.+.. ..|+|||
T Consensus 290 GfM-PAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdG 366 (566)
T KOG2315|consen 290 GFM-PAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDG 366 (566)
T ss_pred ecc-cceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCC
Confidence 211 578999999998888774 678899999999999999887 578999999986533 3799999
Q ss_pred ceeceec
Q 008844 379 KELEENE 385 (551)
Q Consensus 379 ~~l~~~~ 385 (551)
+.+....
T Consensus 367 e~flTAT 373 (566)
T KOG2315|consen 367 EYFLTAT 373 (566)
T ss_pred cEEEEEe
Confidence 9886554
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.4e-13 Score=127.59 Aligned_cols=264 Identities=15% Similarity=0.191 Sum_probs=183.5
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC--CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ--TPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
.|.+.|..|.|...|..|++++.|..|.+||+..+.....+...+ .+....|.|... ...+++++.++++++-.+..
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~-d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSG-DRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCC-CcCceeccccCceeeeeecc
Confidence 459999999999999999999999999999999998887776544 466777888743 45688889999998876544
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEee--eccCcc--
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALV--PVSGAA-- 217 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~~~~-- 217 (551)
.....- ......|...|.-++.-|+. .-|++++.|+.+.-+|++.......+ ...+..
T Consensus 219 t~~~e~-----------------t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 219 TGYVEN-----------------TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred ccceec-----------------ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 332211 11123344477888888877 56889999999999999987653222 213333
Q ss_pred -ceEEEEEeeCCC-EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceee
Q 008844 218 -VIKNIVFSRNGQ-YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMH 294 (551)
Q Consensus 218 -~i~~l~~s~~g~-~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 294 (551)
....++..|... .+++++.|..+++||...-..... ...+..+.. |...-..+.
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~-----------------------n~~~~~f~p~hl~~d~~v~ 338 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN-----------------------NGVLDKFCPHHLVEDDPVN 338 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccc-----------------------cchhhhcCCccccccCccc
Confidence 577888888655 799999999999999322111000 001111111 111122334
Q ss_pred eeeeEEcCCCCEEEEeeccCCcceEEEEecC---C----------ceeEE-EecCCC--ceEEEEE-ecCCCeEEEEcCC
Q 008844 295 WKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---G----------YLVKI-LEGPKE--ALIDLAW-HPVHPIIVSVSLT 357 (551)
Q Consensus 295 ~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~----------~~~~~-l~~h~~--~v~~l~~-sp~~~~l~s~s~d 357 (551)
+++++|+.++.-|+++-. |-.||+|... | ..+.. ++||.. .|..+-| -|...|+++|+.-
T Consensus 339 ITgl~Ysh~~sElLaSYn---De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 339 ITGLVYSHDGSELLASYN---DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred ceeEEecCCccceeeeec---ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence 559999977766666666 7789999665 4 33343 788864 4666654 6788899999999
Q ss_pred CcEEEEecCCCCcce
Q 008844 358 GWVYIWAKDYTENWS 372 (551)
Q Consensus 358 g~i~iW~~~~~~~~~ 372 (551)
|.|.||+-.+++...
T Consensus 416 GhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 416 GHIFIWDKKTGEIIR 430 (559)
T ss_pred ceEEEEecchhHHHH
Confidence 999999999876443
No 243
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=1.6e-12 Score=115.93 Aligned_cols=204 Identities=12% Similarity=0.114 Sum_probs=154.8
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE---EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK---ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
..+|+|.+|++|...++++.....|.||....... ..++..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~------------------------------------ 53 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE------------------------------------ 53 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh------------------------------------
Confidence 68999999999999999999999999998765542 222222
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE-EEee-eccCccceEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI-RALV-PVSGAAVIKN 221 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~-~~~~~~~i~~ 221 (551)
|...+++++|+|..+.|++++.|..-++|....+.. ..++ .+.++...++
T Consensus 54 ----------------------------Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~ 105 (361)
T KOG1523|consen 54 ----------------------------HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATC 105 (361)
T ss_pred ----------------------------hCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceee
Confidence 223789999999999999999999999999954332 2211 1267899999
Q ss_pred EEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccce--eeeeecccccccceeeeeeeE
Q 008844 222 IVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSK--CLALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 222 l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 299 (551)
+.|+|.++.+++|+.-+.|.||-.. . ...- ....-+.+...|+ ++.
T Consensus 106 V~WsP~enkFAVgSgar~isVcy~E-~--------------------------ENdWWVsKhikkPirStv~-----sld 153 (361)
T KOG1523|consen 106 VKWSPKENKFAVGSGARLISVCYYE-Q--------------------------ENDWWVSKHIKKPIRSTVT-----SLD 153 (361)
T ss_pred EeecCcCceEEeccCccEEEEEEEe-c--------------------------ccceehhhhhCCcccccee-----eee
Confidence 9999999999999999999998611 0 0000 0111223344455 899
Q ss_pred EcCCCCEEEEeeccCCcceEEEEecC-------------------CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcE
Q 008844 300 FSGDGEWVIAGSASKGEHKIYIWDRA-------------------GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWV 360 (551)
Q Consensus 300 ~s~dg~~l~~gs~~~~dg~I~iwd~~-------------------~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i 360 (551)
|.|++-+|++|+. |+..+||... |.++..+....+.|..+.|+|.|..|+-.+.|..|
T Consensus 154 WhpnnVLlaaGs~---D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 154 WHPNNVLLAAGST---DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred ccCCcceeccccc---CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 9999999999999 9999998642 33444454456789999999999999999999999
Q ss_pred EEEecCCCC
Q 008844 361 YIWAKDYTE 369 (551)
Q Consensus 361 ~iW~~~~~~ 369 (551)
.+=|...+.
T Consensus 231 ~~~da~~p~ 239 (361)
T KOG1523|consen 231 SFVDAAGPS 239 (361)
T ss_pred EEeecCCCc
Confidence 998877653
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.6e-10 Score=105.75 Aligned_cols=289 Identities=16% Similarity=0.217 Sum_probs=180.9
Q ss_pred CCeEEEEeccCCc-eeeEeecccccccEEEEEecCCCCEEEEEeC---CCCEEEEEcCC--CeEEE--EEEc-CCCeeEE
Q 008844 44 DGSCVIWDFETRG-IAKELRDKECVAAITSVCWSKYGHRILVSAA---DKSLTLWDVLK--GEKIT--RIVL-QQTPLQA 114 (551)
Q Consensus 44 dg~I~iwd~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~vwd~~~--~~~~~--~~~~-~~~~~~~ 114 (551)
+.-|.+|++.+.. .+..+..-.+...++-|+|+|++++|+++.. +|.|..|.+.. |.... .... ..++..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999988322 2222222233688999999999999998865 47788887764 54332 2222 2334677
Q ss_pred EEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccC-CCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec
Q 008844 115 RLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVP-DVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS 193 (551)
Q Consensus 115 ~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~ 193 (551)
++.+++ ..++.+.-..+.+.++-++............ ....+.. .+. ....+.+..++|++++|++.+-
T Consensus 95 svd~~g--~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~--~rQ------~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 95 SVDEDG--RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH--ERQ------ESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred EECCCC--CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC--ccc------cCCccceeeeCCCCCEEEEeec
Confidence 777765 3466666777889999886643222221111 1111000 000 0114778899999999888763
Q ss_pred -CceEEEEECCCCcEEEee--eccCccceEEEEEeeCCCEEEEeeC-CCeEEEEeCcCCccccchhhhhhhccCCCCCcc
Q 008844 194 -KGEILVIDHKSNQIRALV--PVSGAAVIKNIVFSRNGQYLLTNSN-DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGI 269 (551)
Q Consensus 194 -dg~i~i~d~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (551)
--.|.+|++..+.+.... .......-+.|.|+|++++..+.++ +++|-+|. ..+..+..+.++.+..
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~-y~~~~g~~~~lQ~i~t-------- 235 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLE-YNPAVGKFEELQTIDT-------- 235 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEE-EcCCCceEEEeeeecc--------
Confidence 347999999987763222 2244566789999999998776665 99999998 3322222222211110
Q ss_pred eeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEEEe---cCCCceEEEEE
Q 008844 270 EKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKILE---GPKEALIDLAW 344 (551)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~---~h~~~v~~l~~ 344 (551)
....+.+.... ..+.+++||++|.++.. +...|.+|.+. +..+..+. .+......+.|
T Consensus 236 ------------lP~dF~g~~~~---aaIhis~dGrFLYasNR--g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i 298 (346)
T COG2706 236 ------------LPEDFTGTNWA---AAIHISPDGRFLYASNR--GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI 298 (346)
T ss_pred ------------CccccCCCCce---eEEEECCCCCEEEEecC--CCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee
Confidence 01112222221 27889999999998876 35689999888 44343332 23345789999
Q ss_pred ecCCCeEEEEcC-CCcEEEEecCCC
Q 008844 345 HPVHPIIVSVSL-TGWVYIWAKDYT 368 (551)
Q Consensus 345 sp~~~~l~s~s~-dg~i~iW~~~~~ 368 (551)
+|.+++|++++. +..|.+|.++..
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcCC
Confidence 999999999987 556999988753
No 245
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2e-11 Score=116.66 Aligned_cols=299 Identities=14% Similarity=0.166 Sum_probs=178.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC-----------CCCEEEE
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA-----------DKSLTLW 94 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-----------dg~i~vw 94 (551)
=+-+.|||-|+||+|-..-| |.+|--.+-..++.+. | ..|.-+.|||+.+||+|-+. ...++||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H---p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H---PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C---CCceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 46789999999999987665 8899765555555552 2 46899999999999999764 2579999
Q ss_pred EcCCCeEEEEEEcCCC----eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeee------------------cccc
Q 008844 95 DVLKGEKITRIVLQQT----PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL------------------PIAV 152 (551)
Q Consensus 95 d~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~------------------~~~~ 152 (551)
|+.+|...+.+..... -....|+.++. ++++-....|.||+...-...-. .+..
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdK----y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDK----YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCc----eeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 9999999888876322 22456777653 45555557777776544211100 0000
Q ss_pred CCCCCCCCCC---------CCCCCCCCCCCCCceEEEEeeCCCEEEEEe----------cCceEEEEECCCCcE-EEeee
Q 008844 153 PDVANGIAPS---------SRNKYSDGTPPFTPTAACFNKYGDLVYVGN----------SKGEILVIDHKSNQI-RALVP 212 (551)
Q Consensus 153 ~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~----------~dg~i~i~d~~~~~~-~~~~~ 212 (551)
+.......++ .+......-+.-.=.-+-|-.+|.+|++-- .-..+.|+.++.... +..+
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v- 442 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV- 442 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-
Confidence 0000000000 000000000111112355666777776532 112355565555443 2333
Q ss_pred ccCccceEEEEEeeCCCEEEEeeC---CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccc
Q 008844 213 VSGAAVIKNIVFSRNGQYLLTNSN---DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDS 289 (551)
Q Consensus 213 ~~~~~~i~~l~~s~~g~~l~t~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (551)
.-...|...+|-|.|..+++-+. -.++.+|.+... .........
T Consensus 443 -elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~----------------------------~~~~~lVk~---- 489 (698)
T KOG2314|consen 443 -ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN----------------------------IKKPSLVKE---- 489 (698)
T ss_pred -ecchheeeeeeccCCCeEEEEEccccccceeEEEeecC----------------------------CCchhhhhh----
Confidence 45678889999999987766543 456888872110 011111111
Q ss_pred cceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcC------CCcEEE
Q 008844 290 ITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSL------TGWVYI 362 (551)
Q Consensus 290 v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~------dg~i~i 362 (551)
+.....+.+.|+|.|++++.+......|.+.++|+. ..+..+-.......+.+.|.|.|+|+++++. |.--+|
T Consensus 490 ~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri 569 (698)
T KOG2314|consen 490 LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRI 569 (698)
T ss_pred hcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEE
Confidence 112334488999999999988664336889999998 3333322222235678999999999999986 444677
Q ss_pred EecCC
Q 008844 363 WAKDY 367 (551)
Q Consensus 363 W~~~~ 367 (551)
|++..
T Consensus 570 ~tfqG 574 (698)
T KOG2314|consen 570 FTFQG 574 (698)
T ss_pred EEeec
Confidence 77765
No 246
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=9.1e-13 Score=125.16 Aligned_cols=172 Identities=16% Similarity=0.252 Sum_probs=116.2
Q ss_pred eeCCCEEEEEecCceEEEEECCCCcEEEeee---ccCccceEEEEEeeCCC-EEEEeeCCCeEEEEeCcCCccccchhhh
Q 008844 182 NKYGDLVYVGNSKGEILVIDHKSNQIRALVP---VSGAAVIKNIVFSRNGQ-YLLTNSNDRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 182 s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~---~~~~~~i~~l~~s~~g~-~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
.+.+--+++|-.-|.|.++|....+....+. ......|+++.|-|.+. .++++-.+|.+.+||.............
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 4556678889999999999987744322221 12357899999999654 4556667999999983211110000000
Q ss_pred hhhccCCCCCcceeeeecc------ceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeE
Q 008844 258 DIEKGIAEPNGIEKMKMVG------SKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVK 330 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~ 330 (551)
.......+.+.. ...+..+..-+..| +..+|||||++||+.+. ||.++|||.. .+++.
T Consensus 262 -------~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~i-----n~f~FS~DG~~LA~VSq---DGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 262 -------ALKDGDQFAILTSKSKKTRNPVARWHIGEGSI-----NEFAFSPDGKYLATVSQ---DGFLRIFDFDTQELLG 326 (636)
T ss_pred -------ccCCCCeeEEeeeeccccCCccceeEeccccc-----cceeEcCCCceEEEEec---CceEEEeeccHHHHHH
Confidence 000000111100 11222222223333 48899999999999999 9999999999 77777
Q ss_pred EEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 331 ILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 331 ~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
.++.--+...+++|+|||+||++|+.|-.|.||.+...
T Consensus 327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence 77766688999999999999999999999999999754
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=6e-10 Score=102.01 Aligned_cols=288 Identities=16% Similarity=0.212 Sum_probs=179.2
Q ss_pred ccccccC--CCCccceeecccccceEEEEEEcCCCCEEEEEeCC---CeEEEEeccC--CceeeEeecccccccEEEEEe
Q 008844 3 APIIDPL--QGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD---GSCVIWDFET--RGIAKELRDKECVAAITSVCW 75 (551)
Q Consensus 3 l~lwd~~--~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d---g~I~iwd~~~--~~~~~~~~~~~h~~~V~~l~~ 75 (551)
+.+|+.. +|+. ..+....+.+.++-|+|+|++++|+++-.+ |.|..|.++. |.+...-....-..+.+.+++
T Consensus 18 I~v~~ld~~~g~l-~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsv 96 (346)
T COG2706 18 IYVFNLDTKTGEL-SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSV 96 (346)
T ss_pred eEEEEEeCccccc-chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEE
Confidence 4566554 3322 122223345778999999999999988554 7788887774 443221111111344488999
Q ss_pred cCCCCEEEEEeC-CCCEEEEEcCC-CeEE---EEEEcCCC----------eeEEEEecCCCCCcEEEEeeCCCCcEEEEc
Q 008844 76 SKYGHRILVSAA-DKSLTLWDVLK-GEKI---TRIVLQQT----------PLQARLHPGSSTPSLCLACPLSSAPMIVDL 140 (551)
Q Consensus 76 s~~g~~l~s~s~-dg~i~vwd~~~-~~~~---~~~~~~~~----------~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~ 140 (551)
+++|++|+++.. -|.|.++-++. |... ..+..... +....+.|++. .+++..-....+.+|++
T Consensus 97 d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 97 DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR--YLVVPDLGTDRIFLYDL 174 (346)
T ss_pred CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--EEEEeecCCceEEEEEc
Confidence 999999999987 68899999865 4322 22222222 56677888753 34555556678999999
Q ss_pred CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-CceEEEEECCCC--cE--EEe---ee
Q 008844 141 STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-KGEILVIDHKSN--QI--RAL---VP 212 (551)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-dg~i~i~d~~~~--~~--~~~---~~ 212 (551)
..+.......... ........++|+|++++.++.+. +++|.+|..... +. ++. ++
T Consensus 175 ~dg~L~~~~~~~v-----------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 175 DDGKLTPADPAEV-----------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred ccCcccccccccc-----------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 8776543322111 12236788999999999887764 899999988773 22 221 11
Q ss_pred c--cCccceEEEEEeeCCCEEEEeeC-CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec---cc
Q 008844 213 V--SGAAVIKNIVFSRNGQYLLTNSN-DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR---EF 286 (551)
Q Consensus 213 ~--~~~~~i~~l~~s~~g~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 286 (551)
. ........|.++++|++|.++.. ...|.+|. +.+. ++. +..+. .+
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~-V~~~--------------------------~g~-L~~~~~~~te 289 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS-VDPD--------------------------GGK-LELVGITPTE 289 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE-EcCC--------------------------CCE-EEEEEEeccC
Confidence 1 23456778999999999988754 45788887 2221 111 11111 11
Q ss_pred ccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---CceeEEEe-cCCCceEEEEEe
Q 008844 287 QDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GYLVKILE-GPKEALIDLAWH 345 (551)
Q Consensus 287 ~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~~~~~l~-~h~~~v~~l~~s 345 (551)
...-. ...|++.|++|+++..+. ..|.+|.+. |++..... .......||.|.
T Consensus 290 g~~PR-----~F~i~~~g~~Liaa~q~s--d~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 290 GQFPR-----DFNINPSGRFLIAANQKS--DNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CcCCc-----cceeCCCCCEEEEEccCC--CcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 11112 678999999999998863 569999887 55444333 123344555553
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=6.5e-11 Score=118.72 Aligned_cols=227 Identities=16% Similarity=0.062 Sum_probs=137.7
Q ss_pred CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC--CcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS--APMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 89 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
..|.+.|...+................|+|++....++++...++ .|.+.++.++....+...
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--------------- 229 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--------------- 229 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---------------
Confidence 357777776555444333445567789999986544444554444 466778877765443211
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEec-----CceEEEEECCCC---cEEEeeeccCccceEEEEEeeCCCEEEEee-CC
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNS-----KGEILVIDHKSN---QIRALVPVSGAAVIKNIVFSRNGQYLLTNS-ND 237 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~-----dg~i~i~d~~~~---~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s-~D 237 (551)
+.......|+|||+.|+..+. +..+.+|++..+ ....... .........+|+|||+.|+..+ .+
T Consensus 230 ------~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-~~~~~~~~p~wSPDG~~Laf~s~~~ 302 (428)
T PRK01029 230 ------QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-EAFGTQGNPSFSPDGTRLVFVSNKD 302 (428)
T ss_pred ------CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-CCCCCcCCeEECCCCCEEEEEECCC
Confidence 013345789999988876553 223444777653 3333331 2223446789999999887665 46
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
|...||.+.... . +.....+......+. .++|||||++|+......+..
T Consensus 303 g~~~ly~~~~~~-------------------------~-g~~~~~lt~~~~~~~-----~p~wSPDG~~Laf~~~~~g~~ 351 (428)
T PRK01029 303 GRPRIYIMQIDP-------------------------E-GQSPRLLTKKYRNSS-----CPAWSPDGKKIAFCSVIKGVR 351 (428)
T ss_pred CCceEEEEECcc-------------------------c-ccceEEeccCCCCcc-----ceeECCCCCEEEEEEcCCCCc
Confidence 766666511100 0 111222222222333 678999999999887654456
Q ss_pred eEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcC---CCcEEEEecCCCC
Q 008844 318 KIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSL---TGWVYIWAKDYTE 369 (551)
Q Consensus 318 ~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~---dg~i~iW~~~~~~ 369 (551)
.|++||+. ++. ..+......+....|+|++++|+..+. ...|++|++.+++
T Consensus 352 ~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 352 QICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 89999999 554 444433446778999999997775433 3568888887654
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=4.3e-11 Score=119.98 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=131.0
Q ss_pred ccceEEEEEEcCCCCEE---EEEeCC--CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC-CC----CE
Q 008844 22 EHGVMKCIAFNRRGTLL---AAGCSD--GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA-DK----SL 91 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~l---atg~~d--g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg----~i 91 (551)
....+.+-+|||||+.+ ++...+ ..|.+.++.+++..+... . .+......|||||+.|+..+. +| .+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~--~g~~~~p~wSPDG~~Laf~s~~~g~~di~~ 259 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-L--QGNQLMPTFSPRKKLLAFISDRYGNPDLFI 259 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-C--CCCccceEECCCCCEEEEEECCCCCcceeE
Confidence 34556778999999742 244444 357888888776443332 2 345567899999998887653 22 22
Q ss_pred EEEEcCCCe--EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 92 TLWDVLKGE--KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 92 ~vwd~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
.+|++..+. ....+...
T Consensus 260 ~~~~~~~g~~g~~~~lt~~------------------------------------------------------------- 278 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNE------------------------------------------------------------- 278 (428)
T ss_pred EEeecccCCCCcceEeecC-------------------------------------------------------------
Confidence 334443321 00000000
Q ss_pred CCCCCCceEEEEeeCCCEEEEEe-cCce--EEEEECCC-CcEEEeeeccCccceEEEEEeeCCCEEEEeeCC---CeEEE
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGN-SKGE--ILVIDHKS-NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND---RTIRI 242 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~-~dg~--i~i~d~~~-~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D---g~i~i 242 (551)
........+|+|+|+.|+..+ .+|. |+++++.. +.....+. .+...+....|+|+|++|+..+.+ ..|.+
T Consensus 279 --~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v 355 (428)
T PRK01029 279 --AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICV 355 (428)
T ss_pred --CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEE
Confidence 000234578999998777665 4564 55555542 22223332 334566789999999998876543 36888
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
||+.. +.. ..+......+. .+.|+|||++|+......+...|++|
T Consensus 356 ~dl~~-----------------------------g~~-~~Lt~~~~~~~-----~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 356 YDLAT-----------------------------GRD-YQLTTSPENKE-----SPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EECCC-----------------------------CCe-EEccCCCCCcc-----ceEECCCCCEEEEEECCCCCceEEEE
Confidence 88211 111 12221112222 67899999999876654446789999
Q ss_pred ecC-CceeEEEecCCCceEEEEEecCC
Q 008844 323 DRA-GYLVKILEGPKEALIDLAWHPVH 348 (551)
Q Consensus 323 d~~-~~~~~~l~~h~~~v~~l~~sp~~ 348 (551)
++. ++. ..+....+.+...+|+|-.
T Consensus 401 dl~~g~~-~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKT-RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCE-EEeecCCCcccCceecCCC
Confidence 998 544 4443345567788888753
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=8.5e-10 Score=105.24 Aligned_cols=269 Identities=14% Similarity=0.103 Sum_probs=166.9
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC----------CCeEEEEeccCCceeeEeecccc-----
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS----------DGSCVIWDFETRGIAKELRDKEC----- 66 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~----------dg~I~iwd~~~~~~~~~~~~~~h----- 66 (551)
.+.|.|..+++....+..- .. -..+ +||||+.|+++.. +..|.+||..+++.+..+.....
T Consensus 28 ~v~ViD~~~~~v~g~i~~G--~~-P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGG--FL-PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred eEEEEECCCCEEEEEEEcc--CC-Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 3567787777766666542 11 1224 9999998888766 68899999999999988864211
Q ss_pred cccEEEEEecCCCCEEEEEe-C-CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 67 VAAITSVCWSKYGHRILVSA-A-DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
......++++|||++|++.. . +..|.+.|+.+++.+..+..+........... .+.+.+.|+....+.+....
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~-----~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND-----TFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC-----ccEEEeecCceEEEEecCCC
Confidence 12334789999999999876 3 78999999999999999987553322222221 23344566665555444322
Q ss_pred eee-eccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee-CCCEEEEEecCceEEEEECCCC-----cEEEeeecc---
Q 008844 145 TSI-LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK-YGDLVYVGNSKGEILVIDHKSN-----QIRALVPVS--- 214 (551)
Q Consensus 145 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~--- 214 (551)
... .......... . .... .. .|.+ +|+++++... |.|.+.|+... .....+...
T Consensus 179 ~~~~~~~~vf~~~~--------~-~v~~---rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR02658 179 NPKIKPTEVFHPED--------E-YLIN---HP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKA 242 (352)
T ss_pred ceEEeeeeeecCCc--------c-cccc---CC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccc
Confidence 211 1111100000 0 0000 11 3455 7888888777 99999996443 223332111
Q ss_pred ---CccceEEEEEeeCCCEEEEeeC----------CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee
Q 008844 215 ---GAAVIKNIVFSRNGQYLLTNSN----------DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA 281 (551)
Q Consensus 215 ---~~~~i~~l~~s~~g~~l~t~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (551)
..+.+.-++++++++.|++... .+.|.++|. .+.+.+.
T Consensus 243 ~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~-----------------------------~t~kvi~ 293 (352)
T TIGR02658 243 DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA-----------------------------KTGKRLR 293 (352)
T ss_pred cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC-----------------------------CCCeEEE
Confidence 2334455999999998887431 247888882 1233333
Q ss_pred eecccccccceeeeeeeEEcCCCC-EEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 282 LFREFQDSITKMHWKAPCFSGDGE-WVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~s~dg~-~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
.+.. ...+. .++|+|||+ +|++.... ++.|.++|.. ++.++.+
T Consensus 294 ~i~v-G~~~~-----~iavS~Dgkp~lyvtn~~--s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 294 KIEL-GHEID-----SINVSQDAKPLLYALSTG--DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEeC-CCcee-----eEEECCCCCeEEEEeCCC--CCcEEEEECcCCeEEeee
Confidence 3321 12222 889999999 77766642 6789999999 8888887
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.8e-11 Score=117.47 Aligned_cols=255 Identities=13% Similarity=0.110 Sum_probs=159.7
Q ss_pred cccccEEEEEecCCCCEEEE-EeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 65 ECVAAITSVCWSKYGHRILV-SAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
.|....+.|..+|||+||++ |..--.|++||+.+-.+...-.....+..+....+. ...++.-..|..|-+.....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD--~SK~v~L~~DR~IefHak~G- 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDD--YSKSVFLQNDRTIEFHAKYG- 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccc--hhhheEeecCceeeehhhcC-
Confidence 45778899999999998765 455789999999765544443333333333322222 22233333344333322111
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIV 223 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 223 (551)
....+ ..+..-..++++.-..-|++++....|+-+++..|+.+.-+. ...+.++++.
T Consensus 126 ~hy~~----------------------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~ 182 (703)
T KOG2321|consen 126 RHYRT----------------------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVS 182 (703)
T ss_pred eeeee----------------------ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeee
Confidence 11110 001123345555444346666667789999999999988875 4568899999
Q ss_pred EeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC
Q 008844 224 FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD 303 (551)
Q Consensus 224 ~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d 303 (551)
.++-..+|++|+.+|.|..||......- .. ..+...+..+...-....++++.|+.+
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv------------------~~-----l~~~~~v~s~pg~~~~~svTal~F~d~ 239 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRV------------------GT-----LDAASSVNSHPGGDAAPSVTALKFRDD 239 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhh------------------ee-----eecccccCCCccccccCcceEEEecCC
Confidence 9999999999999999999993221100 00 000111122222212223448999999
Q ss_pred CCEEEEeeccCCcceEEEEecC-CceeEE-EecCCCceEEEEEecC--CCeEEEEcCCCcEEEEecCCCCcce
Q 008844 304 GEWVIAGSASKGEHKIYIWDRA-GYLVKI-LEGPKEALIDLAWHPV--HPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 304 g~~l~~gs~~~~dg~I~iwd~~-~~~~~~-l~~h~~~v~~l~~sp~--~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
|-.|++|+. .|.|+|||+. .+++.. -.+..-+|..+.|.+. .+.|+|+. ...++||+-.+++...
T Consensus 240 gL~~aVGts---~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 240 GLHVAVGTS---TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMA 308 (703)
T ss_pred ceeEEeecc---CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCcee
Confidence 999999999 9999999999 444332 2233468999999776 44666665 5679999999877443
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=3e-09 Score=101.55 Aligned_cols=275 Identities=13% Similarity=0.080 Sum_probs=165.7
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC----------CCCEEEEEcCCCeEEEEEEcCCCee--
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA----------DKSLTLWDVLKGEKITRIVLQQTPL-- 112 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~-- 112 (551)
++|.+.|..+++.+..+... ..-..+ ++||++.|+++.. +..|.+||+.+++.+..+..+..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G---~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG---FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc---CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 89999999999999888753 222235 9999999888765 7899999999999999998755533
Q ss_pred ------EEEEecCCCCCcEEEEeeC-CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC
Q 008844 113 ------QARLHPGSSTPSLCLACPL-SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG 185 (551)
Q Consensus 113 ------~~~~~p~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 185 (551)
.+.++|+++ .++++.-. +..+.++|+.+++....... .+ .......+...
T Consensus 103 ~~~~~~~~~ls~dgk--~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~--------------------~~~vy~t~e~~ 159 (352)
T TIGR02658 103 VGTYPWMTSLTPDNK--TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PD--------------------CYHIFPTANDT 159 (352)
T ss_pred ccCccceEEECCCCC--EEEEecCCCCCEEEEEECCCCcEEEEEeC-CC--------------------CcEEEEecCCc
Confidence 788999875 24444434 78999999999886542111 00 11111111111
Q ss_pred CEEEEEecCceEEEEECCC-CcE-EEeeeccCc--cce-EEEEEee-CCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 186 DLVYVGNSKGEILVIDHKS-NQI-RALVPVSGA--AVI-KNIVFSR-NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 186 ~~l~~g~~dg~i~i~d~~~-~~~-~~~~~~~~~--~~i-~~l~~s~-~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
.+ +-+.||......+.. ++. ....+..+. .++ ..-.|.+ +|+++.+... |+|.+.|+.......
T Consensus 160 ~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~------- 229 (352)
T TIGR02658 160 FF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF------- 229 (352)
T ss_pred cE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee-------
Confidence 11 112233333222211 111 111111011 000 0014455 8888877766 999999932111000
Q ss_pred hccCCCCCcceeeeeccceeeeee--cccccccceeeeeeeEEcCCCCEEEEeecc-------CCcceEEEEecC-Ccee
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALF--REFQDSITKMHWKAPCFSGDGEWVIAGSAS-------KGEHKIYIWDRA-GYLV 329 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~-------~~dg~I~iwd~~-~~~~ 329 (551)
...+..+ ...........|..++++++|+.++..... .+.+.|.++|.. ++.+
T Consensus 230 -----------------~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 230 -----------------LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred -----------------cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 0001111 111111222233358999999998885421 113689999999 8888
Q ss_pred EEEecCCCceEEEEEecCCC-eEEEEc-CCCcEEEEecCCCCcceee
Q 008844 330 KILEGPKEALIDLAWHPVHP-IIVSVS-LTGWVYIWAKDYTENWSAF 374 (551)
Q Consensus 330 ~~l~~h~~~v~~l~~sp~~~-~l~s~s-~dg~i~iW~~~~~~~~~~~ 374 (551)
..+.. ...+..|+++||++ +|++.. .++.|.+.|..+.+.....
T Consensus 293 ~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 293 RKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 88774 45789999999999 888776 5889999999887654443
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=4.8e-12 Score=129.54 Aligned_cols=276 Identities=14% Similarity=0.155 Sum_probs=173.3
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEec-----CCCCEEEEEeCCCCEEEEEc
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS-----KYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s-----~~g~~l~s~s~dg~i~vwd~ 96 (551)
|-+++++..+-. .||.+|. .-.|.+||+..+..+..+... +...+. +. -.+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~-~~~~~H---~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQS-KILEVH---RGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhh-cccccc---cccccceeccceEEEEEeecceeecch
Confidence 335566666544 5777664 456999999988766555421 111111 00 01234445443222222111
Q ss_pred CC--CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LK--GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 97 ~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
.. ........+. ..+. .....++....++.+.+||...+....-..... .. .-+
T Consensus 79 ~~~~~~~~s~wi~g---~~l~-----~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e-r~---------------~l~ 134 (967)
T KOG0974|consen 79 SNQIIERFSDWIFG---AKLF-----EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE-RC---------------TLY 134 (967)
T ss_pred hhhhhhhccccccc---cchh-----hhcceEEEEEcCceEEEEecccCceehhcCCCc-eE---------------EEE
Confidence 10 0011111111 0000 112356667777777888776654322110000 00 000
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
...-+.++++.-++++|+.-|.|.+|+......-..+ .+|.+.|..+.|+.+|+++++.|.|+++|+|++...
T Consensus 135 ~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l-~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~------ 207 (967)
T KOG0974|consen 135 SSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL-KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR------ 207 (967)
T ss_pred eEEEEeccCcEEEEEeccccccEEEEeccccCCccee-cccCCceEEEEEccCCcEEEEEecCcceeeeecccc------
Confidence 1222334555568999999999999998833332223 399999999999999999999999999999993221
Q ss_pred hhhhhhccCCCCCcceeeeeccceee-eeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEe
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCL-ALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILE 333 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~ 333 (551)
+.+ ....+|...+. .++|.|+ +|++++. |.+.++|+..+..+..+.
T Consensus 208 -----------------------~~~~~~~fgHsaRvw-----~~~~~~n--~i~t~ge---dctcrvW~~~~~~l~~y~ 254 (967)
T KOG0974|consen 208 -----------------------EVLGCTGFGHSARVW-----ACCFLPN--RIITVGE---DCTCRVWGVNGTQLEVYD 254 (967)
T ss_pred -----------------------cccCcccccccceeE-----EEEeccc--eeEEecc---ceEEEEEecccceehhhh
Confidence 111 24456776666 8899998 8999999 999999988877777888
Q ss_pred cCC-CceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 334 GPK-EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 334 ~h~-~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
+|. ..|..++.++...+++|++.||.+++|++...
T Consensus 255 ~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 255 EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 887 46999999999999999999999999998753
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.42 E-value=5.2e-11 Score=120.65 Aligned_cols=204 Identities=17% Similarity=0.182 Sum_probs=133.1
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeEeecccccccEEEEEecCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD---GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g 79 (551)
|.++|.. +..++.+.. +...+.+.+|+|+|++||.++.. ..|++|++.++...... .+ ...+.+++|+|+|
T Consensus 172 l~~~d~~-g~~~~~l~~--~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~--~~~~~~~~~spDg 245 (417)
T TIGR02800 172 LQVADYD-GANPQTITR--SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SF--PGMNGAPAFSPDG 245 (417)
T ss_pred EEEEcCC-CCCCEEeec--CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cC--CCCccceEECCCC
Confidence 4556654 333344433 45568899999999999987654 47999999987654333 22 4567789999999
Q ss_pred CEEEEE-eCCC--CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC--CcEEEEcCCCceeeeccccCC
Q 008844 80 HRILVS-AADK--SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS--APMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 80 ~~l~s~-s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~ 154 (551)
+.|+.. +.++ .|.+|++.++................|+|++. .++++....+ .++++++.++....+...
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~--- 320 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQIYMMDADGGEVRRLTFR--- 320 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEeecC---
Confidence 877644 4443 58889988776544333333344667888754 2333443344 466777776654332111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc---eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEE
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG---EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYL 231 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 231 (551)
...+..+.|+|+|++|+.++.++ .|.+||+.++...... .........|+|+|++|
T Consensus 321 ------------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~---~~~~~~~p~~spdg~~l 379 (417)
T TIGR02800 321 ------------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT---DTGLDESPSFAPNGRMI 379 (417)
T ss_pred ------------------CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc---CCCCCCCceECCCCCEE
Confidence 01456778999999999888765 8999999886553332 12234556899999988
Q ss_pred EEeeCCC
Q 008844 232 LTNSNDR 238 (551)
Q Consensus 232 ~t~s~Dg 238 (551)
+..+.++
T Consensus 380 ~~~~~~~ 386 (417)
T TIGR02800 380 LYATTRG 386 (417)
T ss_pred EEEEeCC
Confidence 8877654
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=8.1e-11 Score=115.66 Aligned_cols=292 Identities=13% Similarity=0.186 Sum_probs=203.1
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---------------eeeEeecccccccEEEEEecCCCCEEEEEe
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG---------------IAKELRDKECVAAITSVCWSKYGHRILVSA 86 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~---------------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s 86 (551)
.+....|++|+....|||+|+.||.++|..+.+.. .-+++. +|...|.-+.|+.+...|-|+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe--GH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE--GHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc--cCcceEEEEEeccccccccccC
Confidence 45678999999999999999999999999876532 123344 4599999999999999999999
Q ss_pred CCCCEEEEEcCCCeEEEEEE---cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCC
Q 008844 87 ADKSLTLWDVLKGEKITRIV---LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSS 163 (551)
Q Consensus 87 ~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 163 (551)
.+|.|.||-+-.|.....+. -...+.+++|..++. .+.....||.+.+=.+......-..+.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNRIwgKeLk------------ 155 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNRIWGKELK------------ 155 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccceecchhcc------------
Confidence 99999999988776433322 223466788887765 466667777777666655443211110
Q ss_pred CCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEE-------Eeee---ccCccceEEEEEe--------
Q 008844 164 RNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIR-------ALVP---VSGAAVIKNIVFS-------- 225 (551)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~-------~~~~---~~~~~~i~~l~~s-------- 225 (551)
......+.|++|.+.++.+-.+|.+.+||.+..-.+ .... ......|-.+.|.
T Consensus 156 ---------g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~ 226 (1189)
T KOG2041|consen 156 ---------GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVP 226 (1189)
T ss_pred ---------hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCC
Confidence 014557889999999999999999999998753210 0000 0112335566664
Q ss_pred eCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCC
Q 008844 226 RNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGE 305 (551)
Q Consensus 226 ~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~ 305 (551)
|+...|+++-..|.+.|...... ..++..-.+ -.+ ..+.|+++|.
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND----------------------------~~Pvv~dtg--m~~-----vgakWnh~G~ 271 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSEND----------------------------PEPVVVDTG--MKI-----VGAKWNHNGA 271 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCC----------------------------CCCeEEecc--cEe-----ecceecCCCc
Confidence 46678899888888877751110 111111111 112 2778999999
Q ss_pred EEEEeeccC------CcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceeec
Q 008844 306 WVIAGSASK------GEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFA 375 (551)
Q Consensus 306 ~l~~gs~~~------~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~s 375 (551)
+||.++... ..+.|.+|..-|..+..++.+...|++++|-..|-.+|.+- |+.|++=++...-.|..+.
T Consensus 272 vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e 346 (1189)
T KOG2041|consen 272 VLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIE 346 (1189)
T ss_pred EEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEee
Confidence 999887632 12478888777999999999999999999987776666654 8899999988877776443
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=7.3e-11 Score=114.11 Aligned_cols=207 Identities=14% Similarity=0.195 Sum_probs=150.7
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCC
Q 008844 77 KYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVA 156 (551)
Q Consensus 77 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 156 (551)
|...|++....||.+++|+...++....+..... .+..+.-..|.+.-+....
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~------------------~s~t~~~~~w~L~~~~s~~--------- 55 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS------------------LSGTCTYTKWGLSADYSPM--------- 55 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchh------------------ccCcceeEEEEEEeccchH---------
Confidence 4467899999999999999999887766653221 1111222233321111100
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEE----EeeCCCEEEEEecCceEEEEECCCCcEEEeee-ccCccceEEEEEeeCCCEE
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAAC----FNKYGDLVYVGNSKGEILVIDHKSNQIRALVP-VSGAAVIKNIVFSRNGQYL 231 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~----~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l 231 (551)
...++. -+.+-..++-|...|.|.+|+...++....+. ..|.+.|.++.++.+-..|
T Consensus 56 ------------------k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ci 117 (541)
T KOG4547|consen 56 ------------------KWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCI 117 (541)
T ss_pred ------------------HHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCce
Confidence 000100 12233578889999999999999999977776 5788999999999998999
Q ss_pred EEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEee
Q 008844 232 LTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGS 311 (551)
Q Consensus 232 ~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs 311 (551)
.+++.|..+..|+. ......+.+......+. +++++|||..+++++
T Consensus 118 yS~~ad~~v~~~~~-----------------------------~~~~~~~~~~~~~~~~~-----sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 118 YSVGADLKVVYILE-----------------------------KEKVIIRIWKEQKPLVS-----SLCISPDGKILLTAS 163 (541)
T ss_pred EecCCceeEEEEec-----------------------------ccceeeeeeccCCCccc-----eEEEcCCCCEEEecc
Confidence 99999999999981 12344555555555555 889999999999987
Q ss_pred ccCCcceEEEEecC-CceeEEEecCCCceEEEEEecC-----CCeEEE-EcCCCcEEEEecCC
Q 008844 312 ASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPV-----HPIIVS-VSLTGWVYIWAKDY 367 (551)
Q Consensus 312 ~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~-----~~~l~s-~s~dg~i~iW~~~~ 367 (551)
+.|.+|++. ++.+..+.||.++|.+++|-.. |.++.+ ...+..+.+|-+..
T Consensus 164 -----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 -----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 479999999 9999999999999999999877 555544 44577788998876
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.1e-10 Score=118.34 Aligned_cols=210 Identities=10% Similarity=0.088 Sum_probs=132.5
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeEeecccccccEEEEEecCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD---GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g 79 (551)
|.++|...+. +..+.. +...+...+|||||+.|+..+.+ ..|.+|++.++....... . .+.+....|+|+|
T Consensus 181 l~~~d~~g~~-~~~l~~--~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~--~g~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGAR-AVTLLQ--SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-F--EGLNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCC-ceEEec--CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-C--CCCcCCeEECCCC
Confidence 3445554333 334433 56778999999999999876543 469999998876543322 2 3445678999999
Q ss_pred CEEEE-EeCCC--CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC--CcEEEEcCCCceeeeccccCC
Q 008844 80 HRILV-SAADK--SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS--APMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 80 ~~l~s-~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~ 154 (551)
+.|+. .+.++ .|.+||+.++................|+|++.. ++++...++ .++++++.++....+....
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~--i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-- 330 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRT--LYFTSDRGGKPQIYKVNVNGGRAERVTFVG-- 330 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECCCCCEEEeecCC--
Confidence 98874 44444 588889988765443333333456789998642 344444444 4666677777654332110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-c--eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEE
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-G--EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYL 231 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 231 (551)
.......|+|+|++|+..+.. + .|.+||+.+++...... ........|+|+|++|
T Consensus 331 -------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~---~~~~~~p~~spdg~~i 388 (430)
T PRK00178 331 -------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD---TSLDESPSVAPNGTML 388 (430)
T ss_pred -------------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC---CCCCCCceECCCCCEE
Confidence 022356899999998877643 3 58899999887644332 2222356899999998
Q ss_pred EEeeCC-Ce--EEEEe
Q 008844 232 LTNSND-RT--IRIYD 244 (551)
Q Consensus 232 ~t~s~D-g~--i~iwd 244 (551)
+..+.+ +. |.+++
T Consensus 389 ~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 389 IYATRQQGRGVLMLVS 404 (430)
T ss_pred EEEEecCCceEEEEEE
Confidence 876653 33 44554
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=4.6e-11 Score=107.71 Aligned_cols=214 Identities=15% Similarity=0.191 Sum_probs=143.2
Q ss_pred cceEEEEEEcCCCC--EEEEEeCCCeEEEEeccCCcee----------------------------------eEeecccc
Q 008844 23 HGVMKCIAFNRRGT--LLAAGCSDGSCVIWDFETRGIA----------------------------------KELRDKEC 66 (551)
Q Consensus 23 ~~~V~~l~fs~dg~--~latg~~dg~I~iwd~~~~~~~----------------------------------~~~~~~~h 66 (551)
...|..+.|.++++ .++..+.|.+|++|.+...... +..-.+.|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 46788999998764 5556678999999987542111 11123467
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE---EEEcC------CCeeEEEEecCCCCCcEEEEeeCCCCcEE
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT---RIVLQ------QTPLQARLHPGSSTPSLCLACPLSSAPMI 137 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~------~~~~~~~~~p~~~~~~~~~~~~~~~~i~i 137 (551)
..-|++|+++.|+..++++. |=.|.+|++.--.... .++.+ .-+.+..|+|.. ..+++..+..|+|++
T Consensus 164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~--cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH--CNVFVYSSSKGTIRL 240 (433)
T ss_pred eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH--ccEEEEecCCCcEEE
Confidence 88999999999999888875 7889999986432222 22222 226788899965 458999999999999
Q ss_pred EEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECC-CCcEEEeeeccCc
Q 008844 138 VDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK-SNQIRALVPVSGA 216 (551)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~ 216 (551)
.|++....-.......... ..+..+ -........|..+.|+++|+++++-.. -+|++||+. ..+++.+++ .|.
T Consensus 241 cDmR~~aLCd~hsKlfEep--edp~~r--sffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~-vh~ 314 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEP--EDPSSR--SFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP-VHE 314 (433)
T ss_pred eechhhhhhcchhhhhccc--cCCcch--hhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe-ehH
Confidence 9999654322111111100 001111 111122237889999999999988653 489999994 455555554 221
Q ss_pred ------------cce---EEEEEeeCCCEEEEeeCCCeEEEEeC
Q 008844 217 ------------AVI---KNIVFSRNGQYLLTNSNDRTIRIYDN 245 (551)
Q Consensus 217 ------------~~i---~~l~~s~~g~~l~t~s~Dg~i~iwd~ 245 (551)
..| ..++|+.++.+++||+..+..++|+.
T Consensus 315 ~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 315 YLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred hHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 222 35788888999999999999999993
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.36 E-value=3.1e-11 Score=108.86 Aligned_cols=312 Identities=12% Similarity=0.128 Sum_probs=189.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEecc----CCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFE----TRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~----~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
.+++++.+++....|++|-..|++.-+.+. ....++....| ...|..+-|+-....+++.+.|..+.---.+.+
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h--~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH--QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh--hcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 678999999999999999999999988664 33445555544 899999999988899999999988766556666
Q ss_pred eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 100 EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
..+..+........+.+... +...+...+.+....+.......+ .....|...++++
T Consensus 147 ~~lg~Y~~~~~~t~~~~d~~-----~~fvGd~~gqvt~lr~~~~~~~~i------------------~~~~~h~~~~~~l 203 (404)
T KOG1409|consen 147 NRLGGYNFETPASALQFDAL-----YAFVGDHSGQITMLKLEQNGCQLI------------------TTFNGHTGEVTCL 203 (404)
T ss_pred CcccceEeeccCCCCceeeE-----EEEecccccceEEEEEeecCCceE------------------EEEcCcccceEEE
Confidence 65554443332222211110 334444455555444433322211 1123344589999
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
+|.+....+++|..|..+.+||+-.++-+......|...|..+...+.-+.|++++.||.|.+|+...........+..-
T Consensus 204 ~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~ 283 (404)
T KOG1409|consen 204 KWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSD 283 (404)
T ss_pred EEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccc
Confidence 99999999999999999999999877765555558999999999888888999999999999999433222222221111
Q ss_pred hccCCC---CCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--------Cce
Q 008844 260 EKGIAE---PNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--------GYL 328 (551)
Q Consensus 260 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--------~~~ 328 (551)
...... ......+.. .+.+ -++.|...-....+...+-+....+...|. .-.+++-+.- ..+
T Consensus 284 ~cQ~c~qpffwn~~~m~~--~k~~-glr~h~crkcg~avc~~c~s~~~~~p~mg~----e~~vR~~~~c~~~i~~~~~t~ 356 (404)
T KOG1409|consen 284 SCQKCNQPFFWNFRQMWD--RKQL-GLRQHHCRKCGKAVCGKCSSNRSSYPTMGF----EFSVRVCDSCYPTIKDEERTP 356 (404)
T ss_pred hhhhhCchHHHHHHHHHh--hhhh-hhhhhhhhhhhhhcCcccccCccccccccc----eeEEEEecccchhhhcCCCCc
Confidence 000000 000000000 0000 000000000000000112222222333332 3445655432 222
Q ss_pred eEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 329 VKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 329 ~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+.+...-...|+.+.+-.+..+|+|+|.|..|+|||+..
T Consensus 357 LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 357 LAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 333333335799999988888999999999999999875
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.9e-10 Score=116.32 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=122.5
Q ss_pred ccceEEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEE-EeCCCC--EEEEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSD---GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILV-SAADKS--LTLWD 95 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~s~dg~--i~vwd 95 (551)
+...+.+..|||||+.|+..+.+ ..|++||+.+++.... ... ........|+|+|+.|+. .+.++. |.+||
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~--~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSF--PGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCC--CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 45678899999999998876543 3588999988765332 221 233457899999998765 455664 77778
Q ss_pred cCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCC--cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSA--PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
+.+++...............|+|++.. ++++...++. ++++++.++....+....
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~--I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--------------------- 349 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKS--LIFTSERGGKPQIYRVNLASGKVSRLTFEG--------------------- 349 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCEEEEecCC---------------------
Confidence 887765443333334567789998642 4444444444 556677766654432110
Q ss_pred CCceEEEEeeCCCEEEEEec-Cc--eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-CCe--EEEEe
Q 008844 174 FTPTAACFNKYGDLVYVGNS-KG--EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-DRT--IRIYD 244 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-Dg~--i~iwd 244 (551)
......+|+|+|++|+..+. ++ .|.++|+.++....... . .......|+|+|++|+..+. ++. +.+++
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~--~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS--T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC--C-CCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 02234689999998877654 33 56778988887643321 1 12234589999998877654 333 55555
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.1e-10 Score=112.79 Aligned_cols=176 Identities=14% Similarity=0.241 Sum_probs=143.7
Q ss_pred CccccccCCCCccceeeccccc-ceEEEEEEc------C--------------CCCEEEEEeCCCeEEEEeccCCceeeE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEH-GVMKCIAFN------R--------------RGTLLAAGCSDGSCVIWDFETRGIAKE 60 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~-~~V~~l~fs------~--------------dg~~latg~~dg~I~iwd~~~~~~~~~ 60 (551)
.|+||+..+++..+.+.-..|. +..++..|. | +...||-|...|.|.+|++..+++...
T Consensus 16 ~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~ 95 (541)
T KOG4547|consen 16 RLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAK 95 (541)
T ss_pred eEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEE
Confidence 3789999877665555443333 555565552 2 345788899999999999999999999
Q ss_pred eecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEc
Q 008844 61 LRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDL 140 (551)
Q Consensus 61 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~ 140 (551)
+....|.+.|.++.++.+-..|.+++.|+.+..|++..+..++.+.....
T Consensus 96 ~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~------------------------------ 145 (541)
T KOG4547|consen 96 LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP------------------------------ 145 (541)
T ss_pred EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC------------------------------
Confidence 99778899999999999989999999999999999998887777665432
Q ss_pred CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceE
Q 008844 141 STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIK 220 (551)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~ 220 (551)
.+.+++++|||..+++++ ++|++||+.+++.+..+. +|.++|+
T Consensus 146 ----------------------------------~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~ 188 (541)
T KOG4547|consen 146 ----------------------------------LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT-GHGSPVR 188 (541)
T ss_pred ----------------------------------ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec-CCCcceE
Confidence 677899999999999886 689999999999999998 9999999
Q ss_pred EEEEeeC-----CCEEEEe-eCCCeEEEEe
Q 008844 221 NIVFSRN-----GQYLLTN-SNDRTIRIYD 244 (551)
Q Consensus 221 ~l~~s~~-----g~~l~t~-s~Dg~i~iwd 244 (551)
++.|.-+ |.+++++ ..+..|.+|-
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEE
Confidence 9999887 6776655 3466777886
No 262
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=5.1e-09 Score=104.40 Aligned_cols=233 Identities=13% Similarity=0.126 Sum_probs=142.3
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCE-EEEEeC---CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCC
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR-ILVSAA---DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGS 120 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~-l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~ 120 (551)
..|.+=|.+... .+.+... ..+....|+|+|+. ++..+. ...|.++|+.+|+...............|+|++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~---~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG---GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccC---CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCC
Confidence 356665665333 4444432 37889999999984 655444 346888999888766655555555667899987
Q ss_pred CCCcEEEEeeCC--CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-c--
Q 008844 121 STPSLCLACPLS--SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-G-- 195 (551)
Q Consensus 121 ~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-g-- 195 (551)
.. ++++...+ ..+.++++.++....+..... ......|+|+|+.|+..+.. |
T Consensus 245 ~~--la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~---------------------~d~~p~~SPDG~~I~F~Sdr~g~~ 301 (419)
T PRK04043 245 SK--LLLTMAPKGQPDIYLYDTNTKTLTQITNYPG---------------------IDVNGNFVEDDKRIVFVSDRLGYP 301 (419)
T ss_pred CE--EEEEEccCCCcEEEEEECCCCcEEEcccCCC---------------------ccCccEECCCCCEEEEEECCCCCc
Confidence 54 34444333 457777887776543311100 12345799999877776542 2
Q ss_pred eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC---------eEEEEeCcCCccccchhhhhhhccCCCC
Q 008844 196 EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR---------TIRIYDNLLPLKNGLEALVDIEKGIAEP 266 (551)
Q Consensus 196 ~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (551)
.|+++|+.+++...... ... ....|+|+|++|+..+... .|.+.++
T Consensus 302 ~Iy~~dl~~g~~~rlt~-~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~--------------------- 356 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVF-HGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST--------------------- 356 (419)
T ss_pred eEEEEECCCCCeEeCcc-CCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC---------------------
Confidence 68889999887755442 111 1258999999988776532 4555551
Q ss_pred CcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEE
Q 008844 267 NGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAW 344 (551)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~ 344 (551)
.++. ...+.... ... ...|+|||++|+..+..++...|.+.++.|.....+....+.+...+|
T Consensus 357 --------~~g~-~~~LT~~~-~~~-----~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 357 --------NSDY-IRRLTANG-VNQ-----FPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred --------CCCC-eEECCCCC-CcC-----CeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccCCCCC
Confidence 1111 12222211 111 578999999998887755456688888886655656544455544433
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=5.1e-08 Score=92.10 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=115.6
Q ss_pred CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC-eEEEEeCcCCccccchhhhhhhcc
Q 008844 184 YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR-TIRIYDNLLPLKNGLEALVDIEKG 262 (551)
Q Consensus 184 ~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg-~i~iwd~~~~~~~~~~~~~~~~~~ 262 (551)
+|.+++..+ .|...|.+...+-.+.. ++.+.|.-..+.-++.-++.|..|| .+-|||.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~----------------- 389 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK----------------- 389 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcceEEeccCCceEEEEec-----------------
Confidence 466666655 67788877766644433 6777788888888888899999999 8999992
Q ss_pred CCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEE
Q 008844 263 IAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALID 341 (551)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~ 341 (551)
. +..+..+...-+.|. ++..+++|++++++.. ...|.+.|+. |.....-+...+-|+.
T Consensus 390 ------------~-~~e~kr~e~~lg~I~-----av~vs~dGK~~vvaNd---r~el~vididngnv~~idkS~~~lItd 448 (668)
T COG4946 390 ------------D-GGEVKRIEKDLGNIE-----AVKVSPDGKKVVVAND---RFELWVIDIDNGNVRLIDKSEYGLITD 448 (668)
T ss_pred ------------C-CceEEEeeCCccceE-----EEEEcCCCcEEEEEcC---ceEEEEEEecCCCeeEecccccceeEE
Confidence 1 222334444444555 8899999999999988 7889999999 7766555556678999
Q ss_pred EEEecCCCeEEEEcCCC----cEEEEecCCCCcce-----------eecCCccee
Q 008844 342 LAWHPVHPIIVSVSLTG----WVYIWAKDYTENWS-----------AFAPDFKEL 381 (551)
Q Consensus 342 l~~sp~~~~l~s~s~dg----~i~iW~~~~~~~~~-----------~~spd~~~l 381 (551)
++|||++++||-+--+| .|+++++.+++... +|.||++.|
T Consensus 449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence 99999999999886655 58999998866433 566666654
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=3e-10 Score=101.14 Aligned_cols=298 Identities=18% Similarity=0.272 Sum_probs=173.6
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-----eeeEeeccc----------ccccEEEEEecCCC--CEEEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG-----IAKELRDKE----------CVAAITSVCWSKYG--HRILV 84 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~-----~~~~~~~~~----------h~~~V~~l~~s~~g--~~l~s 84 (551)
....|+++.|...|.||++|...|.|.+|.-+... ....+++|. -...|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34679999999999999999988999999765322 222343331 13468899997754 34555
Q ss_pred EeCCCCEEEEEcCCCeEE--EEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 85 SAADKSLTLWDVLKGEKI--TRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 85 ~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
.+.|.+|++|.+...... ..-....... +|-+. + +.+ -..+.+=.+. ......+ .
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~----~~~~g-~--~~s---~~~l~lprls------------~hd~iia-a 161 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFH----SPMGG-P--LTS---TKELLLPRLS------------EHDEIIA-A 161 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccc----cccCC-C--cCC---HHHhhccccc------------ccceEEE-e
Confidence 667999999998654211 1100000000 00000 0 000 0000000000 0000000 0
Q ss_pred CCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE---EEeeeccC-----ccceEEEEEeeC-CCEEEE
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI---RALVPVSG-----AAVIKNIVFSRN-GQYLLT 233 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~-----~~~i~~l~~s~~-g~~l~t 233 (551)
.........|++.+.++.|+.+...++++. +-.|.+|++.-... +..+. +| ...|++..|+|. ...+.-
T Consensus 162 ~p~rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmY 239 (460)
T COG5170 162 KPCRVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMY 239 (460)
T ss_pred ccceeccccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEE
Confidence 001112356778999999999988777654 77899998864322 22222 33 356888999996 345667
Q ss_pred eeCCCeEEEEeCcCCccc-cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeec
Q 008844 234 NSNDRTIRIYDNLLPLKN-GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSA 312 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~ 312 (551)
.+..|.|++-|++....- ....+... ...+.....+.+....| +.+.|+++|+||++-+.
T Consensus 240 SsSkG~Ikl~DlRq~alcdn~~klfe~--------------~~D~v~~~ff~eivsSI-----SD~kFs~ngryIlsRdy 300 (460)
T COG5170 240 SSSKGEIKLNDLRQSALCDNSKKLFEL--------------TIDGVDVDFFEEIVSSI-----SDFKFSDNGRYILSRDY 300 (460)
T ss_pred ecCCCcEEehhhhhhhhccCchhhhhh--------------ccCcccchhHHHHhhhh-----cceEEcCCCcEEEEecc
Confidence 778899999994321100 00000000 00011111222222333 37899999999999886
Q ss_pred cCCcceEEEEecC--CceeEEEecCC------------Cce---EEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 313 SKGEHKIYIWDRA--GYLVKILEGPK------------EAL---IDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 313 ~~~dg~I~iwd~~--~~~~~~l~~h~------------~~v---~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
-+|.|||.. ..++.++.-|. ..| ..+.|+.+...+.+|+..+..-|+-..+
T Consensus 301 ----ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 301 ----LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ----ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 789999999 77888876553 233 3478899999999999988887776543
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=8.8e-09 Score=102.70 Aligned_cols=269 Identities=17% Similarity=0.137 Sum_probs=162.1
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeE
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQ 113 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 113 (551)
++..+++++.+|.|..+|..+|+.+...... ..+.+.... .+..++.++.++.|..||..+|+.+..+........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 4567888888999999999999987766543 223221111 245677778899999999999999888766543321
Q ss_pred EE--EecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE
Q 008844 114 AR--LHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG 191 (551)
Q Consensus 114 ~~--~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g 191 (551)
.. ..|.-. ...++++..++.+..+|..++.............. ....+ .. ....+..+ .+..++++
T Consensus 180 ~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~--~~~~~----~~---~~~~~p~~--~~~~vy~~ 247 (377)
T TIGR03300 180 LRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR--TELER----LV---DVDGDPVV--DGGQVYAV 247 (377)
T ss_pred ecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC--Cchhh----hh---ccCCccEE--ECCEEEEE
Confidence 11 011100 12567777889999999988875432110000000 00000 00 00011111 25578888
Q ss_pred ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCccee
Q 008844 192 NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEK 271 (551)
Q Consensus 192 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (551)
+.+|.++.||..+++.+..... .. ...+. ..+..|++++.+|.|..+|...
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~~--~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~t------------------------ 298 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRDA--SS-YQGPA--VDDNRLYVTDADGVVVALDRRS------------------------ 298 (377)
T ss_pred EcCCEEEEEECCCCcEEEeecc--CC-ccCce--EeCCEEEEECCCCeEEEEECCC------------------------
Confidence 8999999999999988776631 11 12222 3466788888999999999211
Q ss_pred eeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEE-EEEecCCC
Q 008844 272 MKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALID-LAWHPVHP 349 (551)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~-l~~sp~~~ 349 (551)
++.+-.......... ..+.. .+.+|++++. +|.|+++|.. |+.+..+..+...+.. .++ .++
T Consensus 299 -----G~~~W~~~~~~~~~~----ssp~i--~g~~l~~~~~---~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~-~~~- 362 (377)
T TIGR03300 299 -----GSELWKNDELKYRQL----TAPAV--VGGYLVVGDF---EGYLHWLSREDGSFVARLKTDGSGIASPPVV-VGD- 362 (377)
T ss_pred -----CcEEEccccccCCcc----ccCEE--ECCEEEEEeC---CCEEEEEECCCCCEEEEEEcCCCccccCCEE-ECC-
Confidence 111111111111111 12222 4678888888 8999999998 9999888876654333 333 233
Q ss_pred eEEEEcCCCcEEEE
Q 008844 350 IIVSVSLTGWVYIW 363 (551)
Q Consensus 350 ~l~s~s~dg~i~iW 363 (551)
.|+.++.||.|+.|
T Consensus 363 ~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEeCCceEEEe
Confidence 57788889999876
No 266
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=3.4e-09 Score=109.10 Aligned_cols=131 Identities=17% Similarity=0.236 Sum_probs=104.3
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
|.+|.+.-.+.|..+ ..|.+.|.++.|+-||+++++.+.|.++++|++++.+... -.+.+|+..|..++|.|+ +|
T Consensus 157 iivW~~~~dn~p~~l--~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRL--KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred EEEEeccccCCccee--cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--ee
Confidence 568888844444433 4499999999999999999999999999999999988776 233456999999999997 89
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCC--CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQ--TPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
+|++.|.+.++|+. .+..+..+..|. .+..+...++ ....++++.|+.+++|++..
T Consensus 232 ~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~---~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIG---VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCC---ceEEEeeccCcchhhhhhhc
Confidence 99999999999975 455555666554 3556666655 34789999999999998754
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.4e-10 Score=110.71 Aligned_cols=285 Identities=12% Similarity=0.131 Sum_probs=183.2
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC-----ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEE
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-----GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLW 94 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~-----~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vw 94 (551)
..|+..|..++--.+.+.+++++.|.+|++|.+... .....+....|+.+|.++.|..+.++++++ |+.|.+|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW 809 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence 347788888777677788999999999999998632 222334444569999999999988888765 7899999
Q ss_pred EcCCCeEEEEEE---cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 95 DVLKGEKITRIV---LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 95 d~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
|.--|+.+..+. .+.....+...++-..+.+++.|+...+++++|.+........... ....
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc---------------na~~ 874 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC---------------NAPG 874 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec---------------cCCC
Confidence 987777665432 2233444444554444556666789999999999987754321111 1111
Q ss_pred CCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEE-EeCcCCcc
Q 008844 172 PPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRI-YDNLLPLK 250 (551)
Q Consensus 172 ~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~i-wd~~~~~~ 250 (551)
....+.+++..+.|+++++|-++|.|.+.|.++|+.+..+. +.......++ .|..+.|+....|.++.+ |..+.
T Consensus 875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWhald--- 949 (1034)
T KOG4190|consen 875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWHALD--- 949 (1034)
T ss_pred CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeehhcC---
Confidence 22267899999999999999999999999999999887765 3333333333 255667887778888888 86111
Q ss_pred ccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCC----
Q 008844 251 NGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAG---- 326 (551)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~---- 326 (551)
+......+....+.. -+-.-|.-|+++.. ...+.+|--.+
T Consensus 950 --------------------------gimh~q~kpppepah-------flqsvgpSLV~a~~---Gn~lgVYad~a~~ha 993 (1034)
T KOG4190|consen 950 --------------------------GIMHLQDKPPPEPAH-------FLQSVGPSLVTAQN---GNILGVYADSAELHA 993 (1034)
T ss_pred --------------------------CeeeeccCCCCcchh-------hhhccCceeEEecc---CcEEEEEecchhhhh
Confidence 111111111111100 01112444555555 45566664331
Q ss_pred -ceeEEEec--CCCceEEEEEecCCCeEEEEcCCCcEEE
Q 008844 327 -YLVKILEG--PKEALIDLAWHPVHPIIVSVSLTGWVYI 362 (551)
Q Consensus 327 -~~~~~l~~--h~~~v~~l~~sp~~~~l~s~s~dg~i~i 362 (551)
..+..+.. ..+..++++--|-+.-+..|...|.|.+
T Consensus 994 ~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 994 ESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11222221 2356788888888887778888888775
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=2.6e-08 Score=110.16 Aligned_cols=276 Identities=16% Similarity=0.142 Sum_probs=158.2
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeccCCceeeEeeccc------------ccccEEEEEecCCCCEEEEEeC-CCCEE
Q 008844 27 KCIAFNRR-GTLLAAGCSDGSCVIWDFETRGIAKELRDKE------------CVAAITSVCWSKYGHRILVSAA-DKSLT 92 (551)
Q Consensus 27 ~~l~fs~d-g~~latg~~dg~I~iwd~~~~~~~~~~~~~~------------h~~~V~~l~~s~~g~~l~s~s~-dg~i~ 92 (551)
..+++++. |+++++-+.++.|++||.. +..+..+.+.+ +-.....|++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35678774 6677777778899999986 44444443211 0123578999988887766654 56789
Q ss_pred EEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 93 LWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
++|+.++. +.++..... ... +...+.... ...
T Consensus 650 ~id~~~~~-V~tlag~G~-~g~------------------------~~~gg~~~~----------------------~~~ 681 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGT-KGS------------------------DYQGGKKGT----------------------SQV 681 (1057)
T ss_pred EEecCCCE-EEEEeccCc-ccC------------------------CCCCChhhh----------------------Hhh
Confidence 99986654 333322110 000 000000000 000
Q ss_pred CCCceEEEEeeC-CCEEEEEecCceEEEEECCCCcEEEeeec-------------cCccceEEEEEeeCCCEE-EEeeCC
Q 008844 173 PFTPTAACFNKY-GDLVYVGNSKGEILVIDHKSNQIRALVPV-------------SGAAVIKNIVFSRNGQYL-LTNSND 237 (551)
Q Consensus 173 ~~~i~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------------~~~~~i~~l~~s~~g~~l-~t~s~D 237 (551)
-.....++++|+ +.++++.+.++.|++||..++........ ..-.....|+|+|++.+| ++.+.+
T Consensus 682 ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n 761 (1057)
T PLN02919 682 LNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES 761 (1057)
T ss_pred cCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC
Confidence 004567899994 55556666788999999887755322100 011235679999999855 455567
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc---ccceeeeeeeEEcCCCCEEEEeeccC
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD---SITKMHWKAPCFSGDGEWVIAGSASK 314 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~s~dg~~l~~gs~~~ 314 (551)
+.|++||+..... ..+. .+....+ ..+..+....+ ...-.....++++++|+++++-..
T Consensus 762 ~~Irv~D~~tg~~---~~~~--gg~~~~~-----------~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-- 823 (1057)
T PLN02919 762 SSIRALDLKTGGS---RLLA--GGDPTFS-----------DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-- 823 (1057)
T ss_pred CeEEEEECCCCcE---EEEE--ecccccC-----------cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC--
Confidence 9999999322110 0000 0000000 00000000000 000001127899999998777777
Q ss_pred CcceEEEEecCCceeEEEecC--------------CCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 315 GEHKIYIWDRAGYLVKILEGP--------------KEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 315 ~dg~I~iwd~~~~~~~~l~~h--------------~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
++.|++||..+..+..+.+. -.....|+++++|+++++-+.++.|++|++.+.+.
T Consensus 824 -N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 824 -NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 89999999983333333321 12577899999999888888899999999988654
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.20 E-value=2.9e-09 Score=101.26 Aligned_cols=287 Identities=17% Similarity=0.176 Sum_probs=182.3
Q ss_pred CccccccCCCCccceeecccccceEE-EEEEcCCCCEEEEEeCCCeEEEEeccCCcee-eEeecccccccEEEEEecCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMK-CIAFNRRGTLLAAGCSDGSCVIWDFETRGIA-KELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~-~l~fs~dg~~latg~~dg~I~iwd~~~~~~~-~~~~~~~h~~~V~~l~~s~~g 79 (551)
|+.|||..+|.+...+.......... -+.|+-+.+|+|-- ....+.|+++ ++... ..+..- ....|...+|+|.+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~l-r~~gi~dFsisP~~ 185 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNL-RPVGILDFSISPEG 185 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhc-cccceeeEEecCCC
Confidence 57899999998766555433332234 67888888887755 3457999997 43322 111111 13678889999964
Q ss_pred C--EEEE-----EeCCCCEEEEEcCCCeEEEEEEc-CCCeeEEEEecCCCCCcEEEEee--------CCCCcEEEEcCCC
Q 008844 80 H--RILV-----SAADKSLTLWDVLKGEKITRIVL-QQTPLQARLHPGSSTPSLCLACP--------LSSAPMIVDLSTG 143 (551)
Q Consensus 80 ~--~l~s-----~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~--------~~~~i~i~d~~~~ 143 (551)
+ .|+. .+..+++++|.+..+..+.+..+ ......+.|++.+....+++-.. ....++|+++...
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 3 3443 35688999999987776665443 23456777887765322222221 1245667777644
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE--ecCceEEEEECCCCcEEEeeeccCccceEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG--NSKGEILVIDHKSNQIRALVPVSGAAVIKN 221 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 221 (551)
...... ....+|..++|.|.++.+++. ...-.+.++|++.. +...++ ...=..
T Consensus 266 ~i~V~~---------------------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT 320 (561)
T COG5354 266 SIPVEK---------------------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNT 320 (561)
T ss_pred ccceec---------------------cccccceeeeecccCCceeEEecccccceeecccccc-eEEecC---Cccccc
Confidence 332221 112389999999999776654 57888999999887 444332 333455
Q ss_pred EEEeeCCCEEEEeeCC---CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 222 IVFSRNGQYLLTNSND---RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 222 l~~s~~g~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
+.|+|.++++++++-| |.|-+|+.... ..+...+.+.. + +-|
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~r----------------------------f~~~~~~~~~n---~----s~~ 365 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGR----------------------------FKVAGAFNGLN---T----SYC 365 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCc----------------------------eEEEEEeecCC---c----eEe
Confidence 8899999999987765 67999982110 11111222221 1 146
Q ss_pred EEcCCCCEEEEeecc---CCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCC
Q 008844 299 CFSGDGEWVIAGSAS---KGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358 (551)
Q Consensus 299 ~~s~dg~~l~~gs~~---~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg 358 (551)
.|+|||+++.+.... +.|..|.||++.|..+. ..+.+.|.|.+++..+.+.+.
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCchhh-------hhhhccccCCcccceeeccCC
Confidence 799999999877553 24788999999865544 467788999988887777654
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.18 E-value=1.5e-09 Score=98.21 Aligned_cols=251 Identities=11% Similarity=0.189 Sum_probs=165.3
Q ss_pred ccceeeccc-ccceEEEEEEcCCCCEEEEEeCCCeEEEEec-cCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCC
Q 008844 13 FPEVIEEYL-EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDF-ETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKS 90 (551)
Q Consensus 13 ~~~~l~~~~-h~~~V~~l~fs~dg~~latg~~dg~I~iwd~-~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~ 90 (551)
.|..+..+. |...|+....-|...-+++.+.|.+++||-- +.++.-..+. |....+++++.+.+....|+.+-..|+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecce
Confidence 334443333 4467788777788888999999999999954 3444333332 223678999999999999999988888
Q ss_pred EEEEEcCCC----eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 91 LTLWDVLKG----EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 91 i~vwd~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
+.-+.+... ...+....|
T Consensus 92 vtefs~sedfnkm~~~r~~~~h---------------------------------------------------------- 113 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAH---------------------------------------------------------- 113 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhh----------------------------------------------------------
Confidence 877755321 111111111
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCc
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNL 246 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~ 246 (551)
...+..+.|+-.-.++++.+.|..+.--=.+.+..+..+.. ...-+++.+.-. +...|...|.|.+..
T Consensus 114 ------~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--~~~~t~~~~d~~--~~fvGd~~gqvt~lr-- 181 (404)
T KOG1409|consen 114 ------QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF--ETPASALQFDAL--YAFVGDHSGQITMLK-- 181 (404)
T ss_pred ------hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe--eccCCCCceeeE--EEEecccccceEEEE--
Confidence 11555566665566677766665544333333332221110 011111112111 444455555555444
Q ss_pred CCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-
Q 008844 247 LPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA- 325 (551)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~- 325 (551)
+.......+..+.+|.+.+. +++|.+..+.|++|.. +..|.+||+.
T Consensus 182 -------------------------~~~~~~~~i~~~~~h~~~~~-----~l~Wd~~~~~LfSg~~---d~~vi~wdigg 228 (404)
T KOG1409|consen 182 -------------------------LEQNGCQLITTFNGHTGEVT-----CLKWDPGQRLLFSGAS---DHSVIMWDIGG 228 (404)
T ss_pred -------------------------EeecCCceEEEEcCcccceE-----EEEEcCCCcEEEeccc---cCceEEEeccC
Confidence 11223455777888999888 8899999999999999 9999999999
Q ss_pred -CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 326 -GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 326 -~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
......+.+|...|..+...+.-+.|++++.||.|.+|+++.
T Consensus 229 ~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 229 RKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 445677889999999999999899999999999999999975
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.8e-10 Score=123.90 Aligned_cols=195 Identities=15% Similarity=0.248 Sum_probs=143.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
..|.++.=+|...+.+||+.||.|++|....++.+..++..+ ...|+.+.|+.+|+.+..+..||.+.+|.+. .+...
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC-cchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 567888888888999999999999999999999888888765 4899999999999999999999999999875 33333
Q ss_pred EEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee
Q 008844 104 RIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK 183 (551)
Q Consensus 104 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 183 (551)
..+.|.. ..+.+.|-.
T Consensus 2287 s~qchnk----------------------------------------------------------------~~~Df~Fi~ 2302 (2439)
T KOG1064|consen 2287 SWQCHNK----------------------------------------------------------------ALSDFRFIG 2302 (2439)
T ss_pred ccccCCc----------------------------------------------------------------cccceeeee
Confidence 3332221 222233322
Q ss_pred CCCEEEEEe---cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhh
Q 008844 184 YGDLVYVGN---SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIE 260 (551)
Q Consensus 184 ~g~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (551)
..+++++ .++.+.+||..-......+...|.+.++++++.|..+.|++|+.+|.|++||+..
T Consensus 2303 --s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq------------- 2367 (2439)
T KOG1064|consen 2303 --SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ------------- 2367 (2439)
T ss_pred --hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHH-------------
Confidence 3344443 4678999997654444444458999999999999999999999999999999211
Q ss_pred ccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEe
Q 008844 261 KGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
.+....+.. +. ...++++|+. .|.|+||++. -.++..+.
T Consensus 2368 ----------------rql~h~~~~--------------~~-~~~~f~~~ss---~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2368 ----------------RQLRHTFQA--------------LD-TREYFVTGSS---EGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ----------------HHHHHHhhh--------------hh-hhheeeccCc---ccceEEEEccccchhhcCc
Confidence 111111111 22 4678999999 8999999998 55555554
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=5.5e-09 Score=92.67 Aligned_cols=243 Identities=16% Similarity=0.110 Sum_probs=145.4
Q ss_pred ceEEEEEEcC---CCC-EEEEEeCCCeEEEEeccCCceeeEeecccc-c---ccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 24 GVMKCIAFNR---RGT-LLAAGCSDGSCVIWDFETRGIAKELRDKEC-V---AAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 24 ~~V~~l~fs~---dg~-~latg~~dg~I~iwd~~~~~~~~~~~~~~h-~---~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
..+..+.|.. +|. .|+-+...|.|.++..........+++-.. . ....++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4455555643 444 455566678888887654443334432210 1 1234677888888888887788777444
Q ss_pred cCCCeEEE--EEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKIT--RIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 96 ~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
........ .++ .|.
T Consensus 150 ~t~~~le~vq~wk----------------------------------------------------------------~He 165 (339)
T KOG0280|consen 150 ETEMVLEKVQTWK----------------------------------------------------------------VHE 165 (339)
T ss_pred cceeeeeeccccc----------------------------------------------------------------ccc
Confidence 33222211 222 223
Q ss_pred CCceEEEEeeCC-CEEEEEecCceEEEEECC-CCcEEEeeeccCccceEEEEEee-CCCEEEEeeCCCeEEEEeCcCCcc
Q 008844 174 FTPTAACFNKYG-DLVYVGNSKGEILVIDHK-SNQIRALVPVSGAAVIKNIVFSR-NGQYLLTNSNDRTIRIYDNLLPLK 250 (551)
Q Consensus 174 ~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd~~~~~~ 250 (551)
+.+..+.|+... +++++|+.||.+..||++ .++.+..-...|...|.+|.-+| .+.+|+||+.|-.|++||.+.-
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm-- 243 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM-- 243 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc--
Confidence 355666665444 689999999999999999 44444443336888899998886 5779999999999999993311
Q ss_pred ccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC--CCEEEEeeccCCcceEEEEecC---
Q 008844 251 NGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD--GEWVIAGSASKGEHKIYIWDRA--- 325 (551)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d--g~~l~~gs~~~~dg~I~iwd~~--- 325 (551)
++++.. ....+.|. .+..+|. ++.|+++-. +-.+|-+.+
T Consensus 244 --------------------------~kPl~~-~~v~GGVW-----Ri~~~p~~~~~lL~~CMh----~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 244 --------------------------GKPLFK-AKVGGGVW-----RIKHHPEIFHRLLAACMH----NGAKILDSSDKV 287 (339)
T ss_pred --------------------------cCcccc-CccccceE-----EEEecchhhhHHHHHHHh----cCceEEEecccc
Confidence 011110 01123343 4555653 334444443 225555555
Q ss_pred Cc---eeEEEecCCCceEEEEEecCCCeEEEEcC-CCcEE-EEecCCC
Q 008844 326 GY---LVKILEGPKEALIDLAWHPVHPIIVSVSL-TGWVY-IWAKDYT 368 (551)
Q Consensus 326 ~~---~~~~l~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~-iW~~~~~ 368 (551)
.+ .....+.|.+-+..-.|.....+||||+. |..++ +|-.-++
T Consensus 288 ~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 288 LEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 33 34445566666666777555568999886 88755 8866554
No 273
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=7.9e-11 Score=118.38 Aligned_cols=187 Identities=19% Similarity=0.233 Sum_probs=131.2
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC--CEEEEEcCC-
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK--SLTLWDVLK- 98 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg--~i~vwd~~~- 98 (551)
|....+|++|+-+.++|++|+..|.|++|++.+|.......+| ..+|+.+.=+.+|..+++.+.-. -..+|++..
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH--~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH--QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc--ccccccccccCCcceeeeeccccCchHHHhccccc
Confidence 4577899999999999999999999999999999988888776 89999999999998887766532 467898753
Q ss_pred CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 99 GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
+.....+.. ..++.|+... ..-+.+.......+||+.++......+.... ...+.-++
T Consensus 1178 ~~~~Hsf~e---d~~vkFsn~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----------------~~~y~~n~ 1235 (1516)
T KOG1832|consen 1178 GGPRHSFDE---DKAVKFSNSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTV----------------TSSYSNNL 1235 (1516)
T ss_pred cCccccccc---cceeehhhhH---HHHHhcccccceEEEecccCcHHHHhcCcch----------------hhhhhccc
Confidence 344444432 2334444431 1234444557788999999876543222111 11224478
Q ss_pred EEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 179 ACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
+.|+|+..+|+- || .+||.+..+.+..+. ... .-..-.|+|+|..++..+. |||
T Consensus 1236 a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD-~ft-~~~~G~FHP~g~eVIINSE-----IwD 1289 (1516)
T KOG1832|consen 1236 AHFSPCDTLILN---DG--VLWDVRIPEAIHRFD-QFT-DYGGGGFHPSGNEVIINSE-----IWD 1289 (1516)
T ss_pred cccCCCcceEee---Cc--eeeeeccHHHHhhhh-hhe-ecccccccCCCceEEeech-----hhh
Confidence 889999987763 44 589999887666653 111 1223469999999988864 898
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.16 E-value=7.1e-08 Score=91.14 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=132.8
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC-CEEEEEcCCCeEEEEEEcCCCee
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK-SLTLWDVLKGEKITRIVLQQTPL 112 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~ 112 (551)
+|.++|..+. |...|.+...+-.++. +|...|.-..+..++.-++.|..|| .|-|+|..+++.......-..+.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceE
Confidence 6889998875 7777777665544433 2467799888988888899999998 89999998887666666667788
Q ss_pred EEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe
Q 008844 113 QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN 192 (551)
Q Consensus 113 ~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~ 192 (551)
.+..+|++. .++++.....+.++|+.++....+..... .-|+.+.|+|++++||-+-
T Consensus 406 av~vs~dGK---~~vvaNdr~el~vididngnv~~idkS~~--------------------~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 406 AVKVSPDGK---KVVVANDRFELWVIDIDNGNVRLIDKSEY--------------------GLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred EEEEcCCCc---EEEEEcCceEEEEEEecCCCeeEeccccc--------------------ceeEEEEEcCCceeEEEec
Confidence 999999875 67788888899999999998776532221 2789999999999999876
Q ss_pred cCc----eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee
Q 008844 193 SKG----EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 193 ~dg----~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
-+| .|+++|+.+++..... ...+.=.+-+|.|++++|.--+
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vT--T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVT--TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEec--CCcccccCcccCCCCcEEEEEe
Confidence 554 6999999999886655 3333445678999999876543
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=7.9e-09 Score=103.01 Aligned_cols=278 Identities=10% Similarity=0.069 Sum_probs=176.6
Q ss_pred eeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCC------------CEEE
Q 008844 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG------------HRIL 83 (551)
Q Consensus 16 ~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g------------~~l~ 83 (551)
++....|...-.++.|+|.| +||.|+. ..|.+-|..+-+.++.+..| ...|+.+.|.|-. -+|+
T Consensus 8 tlpG~l~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h--~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 8 TLPGPLSRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELH--QSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred cCCCCCCcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccC--ccceeEEEeccCCCchhccCccccceeEE
Confidence 34444455556788999988 7777775 57889999999999999866 8999999998731 2456
Q ss_pred EEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 84 VSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 84 s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
++...|.|.+||+..+..+..+..+.. +..++|.+.
T Consensus 84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~------------------------------------------- 120 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPA------------------------------------------- 120 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeec-------------------------------------------
Confidence 666789999999988877766665543 223333332
Q ss_pred CCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee-CCCEEEEeeCCCeE
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR-NGQYLLTNSNDRTI 240 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg~i 240 (551)
-++. ..|++-....+|.+|+..+|+.+.... .......|+.+.| +.+++..-+..|.+
T Consensus 121 -------------------rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 121 -------------------RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred -------------------cCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceEEEEccCceE
Confidence 1122 456666667899999999999988775 3445667789988 66778877888888
Q ss_pred EEEeCcCCccccchhhhhhhccCC--CCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIA--EPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
.+-+.+ +.+...-..+.+.-... .+...+.-.. .+............++ -.-.++|+|.-+.++.... ...
T Consensus 181 l~~~~l-~~sep~~pgk~~qI~sd~Sdl~~lere~a-t~ns~ts~~~sa~fit--y~a~faf~p~~rn~lfi~~---pre 253 (1062)
T KOG1912|consen 181 LSCKDL-GLSEPDVPGKEFQITSDHSDLAHLERETA-TGNSTTSTPASAYFIT--YCAQFAFSPHWRNILFITF---PRE 253 (1062)
T ss_pred EEEecc-CCCCCCCCceeEEEecCccchhhhhhhhh-ccccccCCCcchhHHH--HHHhhhcChhhhceEEEEe---ccc
Confidence 888732 22111110000000000 0000000000 0000000000000000 0114688997776666666 678
Q ss_pred EEEEecC-CceeEEEecCCCceEEEEEecCCC--eEEEEcCCCcEEEEecCC
Q 008844 319 IYIWDRA-GYLVKILEGPKEALIDLAWHPVHP--IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 319 I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~--~l~s~s~dg~i~iW~~~~ 367 (551)
|+|+|++ ..++..+.-..+.+.-+.|-|+.+ .|++.-.||.+.||-...
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 9999999 888888877778788888888765 788888899999998654
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=4.7e-08 Score=97.49 Aligned_cols=270 Identities=17% Similarity=0.107 Sum_probs=164.8
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeE
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQ 113 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 113 (551)
.+..|++++.+|.|.-+|..+|+.+..+... ......+.. ++..++.++.++.|..+|..+|+.+........+..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~--~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLD--ERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCC--CCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec
Confidence 3568888888999999999999988776543 211112222 466788888899999999999999888776544322
Q ss_pred EEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec
Q 008844 114 ARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS 193 (551)
Q Consensus 114 ~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~ 193 (551)
.-... ...++.+..++.++.+|..+++............. .. ...+..+. +..++++..
T Consensus 140 ~p~v~----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-----------~~----~~~sp~~~--~~~v~~~~~ 198 (377)
T TIGR03300 140 PPLVA----NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT-----------LR----GSASPVIA--DGGVLVGFA 198 (377)
T ss_pred CCEEE----CCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee-----------ec----CCCCCEEE--CCEEEEECC
Confidence 11111 12567777889999999998876543211100000 00 00111111 246788888
Q ss_pred CceEEEEECCCCcEEEeeeccCcc---c------e-EEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccC
Q 008844 194 KGEILVIDHKSNQIRALVPVSGAA---V------I-KNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGI 263 (551)
Q Consensus 194 dg~i~i~d~~~~~~~~~~~~~~~~---~------i-~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (551)
+|.+..+|..+++.+......... . + ....+ .+..+++++.+|.++.||...
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~t---------------- 260 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRS---------------- 260 (377)
T ss_pred CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCC----------------
Confidence 999999999999876654321110 0 0 11112 345788888899999999211
Q ss_pred CCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecC-CCceEE
Q 008844 264 AEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGP-KEALID 341 (551)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h-~~~v~~ 341 (551)
++.+-... ... . ..+. ..+..|++++. +|.|+.+|.. |+.+-..... ......
T Consensus 261 -------------G~~~W~~~-~~~-~-----~~p~--~~~~~vyv~~~---~G~l~~~d~~tG~~~W~~~~~~~~~~ss 315 (377)
T TIGR03300 261 -------------GRVLWKRD-ASS-Y-----QGPA--VDDNRLYVTDA---DGVVVALDRRSGSELWKNDELKYRQLTA 315 (377)
T ss_pred -------------CcEEEeec-cCC-c-----cCce--EeCCEEEEECC---CCeEEEEECCCCcEEEccccccCCcccc
Confidence 11111111 000 0 0222 24667777777 8999999998 8776544221 112222
Q ss_pred EEEecCCCeEEEEcCCCcEEEEecCCCCccee
Q 008844 342 LAWHPVHPIIVSVSLTGWVYIWAKDYTENWSA 373 (551)
Q Consensus 342 l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~ 373 (551)
... .+..|++++.+|.|++|+..+++....
T Consensus 316 p~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 316 PAV--VGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred CEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 222 356888899999999999988775433
No 277
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.14 E-value=3.1e-07 Score=85.59 Aligned_cols=228 Identities=17% Similarity=0.214 Sum_probs=142.5
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEec-CCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 28 CIAFNR-RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS-KYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 28 ~l~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s-~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
+++|.+ +|.++++-...+.|..|+..++... .+... . ...+.+. +++. |+.+.. +.+.++|+.+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~---~-~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP---G-PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS---S-EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC---C-CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEe
Confidence 567887 7777777777899999999876543 33322 2 6677777 5654 555554 44566698888654433
Q ss_pred EcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC
Q 008844 106 VLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG 185 (551)
Q Consensus 106 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 185 (551)
..... . .....++.+++.++|
T Consensus 77 ~~~~~----------~-------------------------------------------------~~~~~~ND~~vd~~G 97 (246)
T PF08450_consen 77 DLPDG----------G-------------------------------------------------VPFNRPNDVAVDPDG 97 (246)
T ss_dssp EEETT----------C-------------------------------------------------SCTEEEEEEEE-TTS
T ss_pred eccCC----------C-------------------------------------------------cccCCCceEEEcCCC
Confidence 32100 0 000167788999999
Q ss_pred CEEEEEecC--------ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEE-EeeCCCeEEEEeCcCCccccchhh
Q 008844 186 DLVYVGNSK--------GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLL-TNSNDRTIRIYDNLLPLKNGLEAL 256 (551)
Q Consensus 186 ~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (551)
++.++.... |.|..++.. ++..... ..-...+.|+|+|+++.|+ +-+..+.|..|++..+...
T Consensus 98 ~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~--~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~----- 169 (246)
T PF08450_consen 98 NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA--DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE----- 169 (246)
T ss_dssp -EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE--EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-----
T ss_pred CEEEEecCCCccccccccceEEECCC-CeEEEEe--cCcccccceEECCcchheeecccccceeEEEeccccccc-----
Confidence 866655432 678888888 5554444 3455678999999999776 5566888888882211000
Q ss_pred hhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCC
Q 008844 257 VDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPK 336 (551)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~ 336 (551)
......+....... -....+++..+|++.++... .+.|.+++..|+++..+..+.
T Consensus 170 --------------------~~~~~~~~~~~~~~--g~pDG~~vD~~G~l~va~~~---~~~I~~~~p~G~~~~~i~~p~ 224 (246)
T PF08450_consen 170 --------------------LSNRRVFIDFPGGP--GYPDGLAVDSDGNLWVADWG---GGRIVVFDPDGKLLREIELPV 224 (246)
T ss_dssp --------------------EEEEEEEEE-SSSS--CEEEEEEEBTTS-EEEEEET---TTEEEEEETTSCEEEEEE-SS
T ss_pred --------------------eeeeeeEEEcCCCC--cCCCcceEcCCCCEEEEEcC---CCEEEEECCCccEEEEEcCCC
Confidence 00011111111110 01127899999998887766 789999999999999888876
Q ss_pred CceEEEEEe-cCCCeEEEE
Q 008844 337 EALIDLAWH-PVHPIIVSV 354 (551)
Q Consensus 337 ~~v~~l~~s-p~~~~l~s~ 354 (551)
..+++++|. ++...|+..
T Consensus 225 ~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSEEEEEEESTTSSEEEEE
T ss_pred CCEEEEEEECCCCCEEEEE
Confidence 789999994 665544443
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=4.5e-10 Score=120.94 Aligned_cols=192 Identities=15% Similarity=0.223 Sum_probs=150.4
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 146 (551)
-..|.++.=+|...+.+||+.||.|++|....+..+..++...+
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~------------------------------------ 2251 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN------------------------------------ 2251 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc------------------------------------
Confidence 56788888888888999999999999999877776665543221
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR 226 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~ 226 (551)
..++.+.|+..|+.+.++..||.+.+|.+. .++....+ .|......++|-.
T Consensus 2252 ---------------------------s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~ 2302 (2439)
T KOG1064|consen 2252 ---------------------------SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG 2302 (2439)
T ss_pred ---------------------------chhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee
Confidence 178888999999999999999999999987 44444443 7888888888875
Q ss_pred CCCEEEEee---CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC
Q 008844 227 NGQYLLTNS---NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD 303 (551)
Q Consensus 227 ~g~~l~t~s---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d 303 (551)
..+++++ .++.+.+||.+.+. ...+.. ..|...++ ++++.|.
T Consensus 2303 --s~~~tag~s~d~~n~~lwDtl~~~---------------------------~~s~v~-~~H~~gaT-----~l~~~P~ 2347 (2439)
T KOG1064|consen 2303 --SLLATAGRSSDNRNVCLWDTLLPP---------------------------MNSLVH-TCHDGGAT-----VLAYAPK 2347 (2439)
T ss_pred --hhhhccccCCCCCcccchhcccCc---------------------------ccceee-eecCCCce-----EEEEcCc
Confidence 5667654 47889999955442 222222 67888887 8899999
Q ss_pred CCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 304 GEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 304 g~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
-+.|++|+. +|.|++||+. .++...++. ++ ...++++++..|.|+||++......
T Consensus 2348 ~qllisggr---~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2348 HQLLISGGR---KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred ceEEEecCC---cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchh
Confidence 999999999 9999999999 776666654 55 6679999999999999999876543
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=9.4e-10 Score=108.76 Aligned_cols=287 Identities=15% Similarity=0.239 Sum_probs=183.8
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC-ceeeEeecccccccEEEEEecCCC--CEEEEEeCCCCEEEEEcCCC
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-GIAKELRDKECVAAITSVCWSKYG--HRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~-~~~~~~~~~~h~~~V~~l~~s~~g--~~l~s~s~dg~i~vwd~~~~ 99 (551)
.+.+.++.++|.|+-+|.++.-| +.|.|+... ...+-+. |...-.|-.+.|+|.. .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 46788999999999999998877 556676643 3332222 2224567778888743 33333334455668987532
Q ss_pred --eEEE-EEEcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 100 --EKIT-RIVLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 100 --~~~~-~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
..+. .+.+| ..+..+.|+|. ++.++.+++.+..+..||++...........+.. .
T Consensus 102 s~~aIef~lhghsraitd~n~~~q--~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-------------------~ 160 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQ--HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-------------------A 160 (1081)
T ss_pred CccceEEEEecCccceeccccCCC--CCcceeeccccccceeeeccCCCcceeeeecccc-------------------c
Confidence 2222 22333 34777888874 4669999999999999999998876665554433 4
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCccccc
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
.+.+.|+-....+.+.+....|.+||++.+.. +..++ .|...|+.+.|..- ...+++++.|++|+.|+........
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~- 238 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES- 238 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc-
Confidence 56788877666667777777899999998765 55554 68888888888753 3468899999999999921111000
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE---------EEec
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY---------IWDR 324 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~---------iwd~ 324 (551)
-+. .....++ | ..+|-|-|+-.+.--..+ +..+. .|+.
T Consensus 239 --------------------------~~~-vtt~~pi----w-~~r~~Pfg~g~~~mp~~G-~n~v~~~~c~n~d~e~n~ 285 (1081)
T KOG0309|consen 239 --------------------------KRT-VTTNFPI----W-RGRYLPFGEGYCIMPMVG-GNMVPQLRCENSDLEWNV 285 (1081)
T ss_pred --------------------------cee-ccccCcc----e-eccccccCceeEeccccC-Ceeeeeccccchhhhhcc
Confidence 000 0001111 1 223444332222111111 23333 4555
Q ss_pred C--CceeEEEecCCCceEEEEEecCCC----------eEEEEcCCCcEEEEecCC
Q 008844 325 A--GYLVKILEGPKEALIDLAWHPVHP----------IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 325 ~--~~~~~~l~~h~~~v~~l~~sp~~~----------~l~s~s~dg~i~iW~~~~ 367 (551)
. ..++..+.||...|...-|-..+. .|+|-+.|..+++|-+..
T Consensus 286 ~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 286 FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 4 568899999999998887743322 799999999999999876
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.09 E-value=1.2e-07 Score=103.03 Aligned_cols=277 Identities=12% Similarity=0.130 Sum_probs=168.2
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEecc----C-------------------CceeeEeeccc--------------
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFE----T-------------------RGIAKELRDKE-------------- 65 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~----~-------------------~~~~~~~~~~~-------------- 65 (551)
...|.|++||||+.+||..+.+++|.+-.-. . |+.-..|.|..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4679999999999999999989888775421 0 11111111110
Q ss_pred --------ccccEEEEEecCCCCEEEEEeC---C---CCEEEEEcCCCeEEEEEEcC-CCeeEEEEecCCCCCcEEEEee
Q 008844 66 --------CVAAITSVCWSKYGHRILVSAA---D---KSLTLWDVLKGEKITRIVLQ-QTPLQARLHPGSSTPSLCLACP 130 (551)
Q Consensus 66 --------h~~~V~~l~~s~~g~~l~s~s~---d---g~i~vwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~ 130 (551)
+...-..|+|-.||.|+++.+. . ..|+||+- .|.....-..- .-...++|.|.|. ++++..
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~---lIA~~q 275 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGN---LIASSQ 275 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCC---EEEEEE
Confidence 1224467899999999998875 2 57999994 56644433311 1234678889874 344333
Q ss_pred C---CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE
Q 008844 131 L---SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207 (551)
Q Consensus 131 ~---~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~ 207 (551)
. ...|.+|.-+.-+...+.+... .....+..+.|++++..|++...+. |.+|-..+..-
T Consensus 276 ~~~~~~~VvFfErNGLrhgeF~l~~~-----------------~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLRHGEFTLRFD-----------------PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred EcCCCcEEEEEecCCcEeeeEecCCC-----------------CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence 2 2345555544433333332221 1122789999999999999977655 99999887653
Q ss_pred --EEeeeccCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec
Q 008844 208 --RALVPVSGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR 284 (551)
Q Consensus 208 --~~~~~~~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (551)
...+.......+..+.|+|.. ..|...+.+|.+..++. ....
T Consensus 338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~-----------------------------------~~~v 382 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF-----------------------------------AWDV 382 (928)
T ss_pred EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE-----------------------------------EEEE
Confidence 233332344556669999954 45777777788877761 0000
Q ss_pred ccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-Cc---e--eEEEecCCCceEEEEEecCCCeEEEEcCC
Q 008844 285 EFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-GY---L--VKILEGPKEALIDLAWHPVHPIIVSVSLT 357 (551)
Q Consensus 285 ~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~~---~--~~~l~~h~~~v~~l~~sp~~~~l~s~s~d 357 (551)
.+. -..+| |...+++.. ...+.+-.+. .. + ...+. -..+|.+++|++++..+++...|
T Consensus 383 ~~s----------~~~~~~D~g~vaVID----G~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d 447 (928)
T PF04762_consen 383 SRS----------PGSSPNDNGTVAVID----GNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSD 447 (928)
T ss_pred Eec----------CCCCccCceEEEEEe----CCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECC
Confidence 000 01112 122233333 2456666555 21 1 23333 24789999999999889999999
Q ss_pred CcEEEEecCCCCcc
Q 008844 358 GWVYIWAKDYTENW 371 (551)
Q Consensus 358 g~i~iW~~~~~~~~ 371 (551)
|.|.+|.......|
T Consensus 448 ~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 448 GSLSIYEWDLKNMW 461 (928)
T ss_pred CCEEEEEecCCCcc
Confidence 99999997665544
No 281
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2e-08 Score=96.59 Aligned_cols=289 Identities=17% Similarity=0.191 Sum_probs=170.1
Q ss_pred CccccccCCCCccceeecccccceEE-EEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMK-CIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~-~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
.+.|||..+|...+.+..+.....+. -..||.|++|+|.-.. .+|.||+.....++..-... -..|....|+|.++
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk--i~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK--ISGIRDFSWSPTSN 359 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC--CccccCcccCCCcc
Confidence 37899999998877766543333332 3579999999998766 46999998765544333333 57899999999988
Q ss_pred EEEEEeC-----CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCC---------CCcEEEEcCCCcee
Q 008844 81 RILVSAA-----DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS---------SAPMIVDLSTGSTS 146 (551)
Q Consensus 81 ~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---------~~i~i~d~~~~~~~ 146 (551)
+|+.-.- -..+.+-.+.+++.+++..... +..+.++-..+...+|+-...- ..+-|+.++.....
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn-VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp 438 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN-VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP 438 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeecccee-eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC
Confidence 8875432 2356666776766666554432 2222333222223344433221 12335555554443
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec---CceEEEEECCC-Cc---EEEeeeccCccce
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS---KGEILVIDHKS-NQ---IRALVPVSGAAVI 219 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~---dg~i~i~d~~~-~~---~~~~~~~~~~~~i 219 (551)
...+...+ .+..++|-|.|+.+++-+. ..++.+|.+.+ .. ++..+ .....
T Consensus 439 ve~velke--------------------~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~---dk~~~ 495 (698)
T KOG2314|consen 439 VEVVELKE--------------------SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL---DKKFA 495 (698)
T ss_pred ceeeecch--------------------heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh---ccccc
Confidence 33333222 7889999999987766543 45788888773 22 23333 23556
Q ss_pred EEEEEeeCCCEEEEe---eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 220 KNIVFSRNGQYLLTN---SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~---s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
+.+.|+|.|++++.+ |..|.+.++|+... ...... ...|. ..+
T Consensus 496 N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---------------------------~~k~~~-~~eh~------~at 541 (698)
T KOG2314|consen 496 NTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---------------------------DLKDTA-SPEHF------AAT 541 (698)
T ss_pred ceEEEcCCCcEEEEEEecccccceEEEecchh---------------------------hhhhcc-Ccccc------ccc
Confidence 789999999998776 45788999992110 000000 11111 122
Q ss_pred eeEEcCCCCEEEEeecc---CCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEE
Q 008844 297 APCFSGDGEWVIAGSAS---KGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVS 353 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~---~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s 353 (551)
.+-|.|.|+|+++++.. +-|.-.+||+.+|.+++.- --+....+.|-|.-+.++|
T Consensus 542 ~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~~--~i~~f~qF~WRPRPps~LS 599 (698)
T KOG2314|consen 542 EVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKED--IIDRFKQFLWRPRPPSLLS 599 (698)
T ss_pred cceECCCCCEEEEeeehhhhccccceEEEEeecHHHHHH--HHHHHHhhccCCCCCcccC
Confidence 67899999999998862 1133345555554443321 0123445667666665554
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=1.6e-07 Score=101.99 Aligned_cols=284 Identities=12% Similarity=0.183 Sum_probs=167.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEE----eccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIW----DFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iw----d~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
+.|.++.|-++...|+.+..+|.|.+. +..+... .....- ...|.+++||||+..|+.+..+++|.+-. ++.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~v--d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~f 151 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSV--DSGILAASWSPDEELLALVTGEGNLLLMT-RDF 151 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEE--cCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccc
Confidence 578899999999989999999999999 5544332 122111 67899999999999999999999988875 667
Q ss_pred eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 100 EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
..+.....+..... ....++.+....-.-|.-+.++....... ....+ ........ ....-..+
T Consensus 152 d~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~-----~p~~~-~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 152 DPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLR-----DPTVP-KVDEGKLS-WDDGRVRI 215 (928)
T ss_pred eEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhcc-----CCCCC-ccccCccc-cCCCceEE
Confidence 77776665432111 11122222211111111111111000000 00000 00001111 23356789
Q ss_pred EEeeCCCEEEEEec---C---ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC---CCeEEEEeCcCCcc
Q 008844 180 CFNKYGDLVYVGNS---K---GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN---DRTIRIYDNLLPLK 250 (551)
Q Consensus 180 ~~s~~g~~l~~g~~---d---g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~---Dg~i~iwd~~~~~~ 250 (551)
+|-.||.++|+.+. . ..|+||+-. |.+..+.. .-.+--.+++|-|.|++||+... .-.|.+|. ...
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNG-- 290 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNG-- 290 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCC--
Confidence 99999999999875 3 478999976 65544443 33444557899999999998764 34577776 110
Q ss_pred ccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---Cc
Q 008844 251 NGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GY 327 (551)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~ 327 (551)
.+ -+.....+......+ ..+.|++|+..||.... ..|++|-+. ..
T Consensus 291 --Lr---------------------hgeF~l~~~~~~~~v-----~~l~Wn~ds~iLAv~~~----~~vqLWt~~NYHWY 338 (928)
T PF04762_consen 291 --LR---------------------HGEFTLRFDPEEEKV-----IELAWNSDSEILAVWLE----DRVQLWTRSNYHWY 338 (928)
T ss_pred --cE---------------------eeeEecCCCCCCcee-----eEEEECCCCCEEEEEec----CCceEEEeeCCEEE
Confidence 00 011011111122233 38999999999999876 349999887 33
Q ss_pred eeEEEecC-CCceEEEEEecCCC-eEEEEcCCCcEEEEe
Q 008844 328 LVKILEGP-KEALIDLAWHPVHP-IIVSVSLTGWVYIWA 364 (551)
Q Consensus 328 ~~~~l~~h-~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~ 364 (551)
+-+.+... ...+..+.|+|..+ .|.....+|.+.+++
T Consensus 339 LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 339 LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 44445433 23456699999876 455555556665433
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=3.3e-08 Score=98.69 Aligned_cols=234 Identities=16% Similarity=0.169 Sum_probs=152.1
Q ss_pred cccccCCCCccceeecccccceEEEEEEcCCC------------CEEEEEeCCCeEEEEeccCCceeeEeecccccccEE
Q 008844 4 PIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRG------------TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAIT 71 (551)
Q Consensus 4 ~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg------------~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~ 71 (551)
.|.|..+-+..+.+.. |...|+.+.|.|-. -+||++...|.|.+||+..+..+..+..+ ..+|.
T Consensus 38 ~VVDs~s~q~iqsie~--h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~--~~~~q 113 (1062)
T KOG1912|consen 38 SVVDSRSLQLIQSIEL--HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHS--NDSVQ 113 (1062)
T ss_pred EEEehhhhhhhhcccc--CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCC--Ccchh
Confidence 3445555555666655 77899999998721 26788888899999999998887777654 89999
Q ss_pred EEEecC---CC-CEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeE-EEEecCCCCCcEEEEeeCCCCcEEEEcCCCc--
Q 008844 72 SVCWSK---YG-HRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQ-ARLHPGSSTPSLCLACPLSSAPMIVDLSTGS-- 144 (551)
Q Consensus 72 ~l~~s~---~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~-- 144 (551)
.++|-+ +. .+|+.-....+|.+|+..+|+.+........+.. +.+.|-.. ..+...+..|.+.+.+.-...
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSEP 191 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCCC
Confidence 999976 33 4566666678999999999999998877666554 77777653 344555566666666543221
Q ss_pred -----eeeeccccCCCCCC-CCCCC-CCCCCCCCCCCC---ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc
Q 008844 145 -----TSILPIAVPDVANG-IAPSS-RNKYSDGTPPFT---PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS 214 (551)
Q Consensus 145 -----~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~---i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 214 (551)
..++.....+.... ..... ..........+- ..-++|+|.-+.++.......+.|+|++-..++..++.
T Consensus 192 ~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi- 270 (1062)
T KOG1912|consen 192 DVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI- 270 (1062)
T ss_pred CCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe-
Confidence 11221111110000 00000 000000000011 12356788876677677788899999999888888763
Q ss_pred CccceEEEEEeeCCC--EEEEeeCCCeEEEEe
Q 008844 215 GAAVIKNIVFSRNGQ--YLLTNSNDRTIRIYD 244 (551)
Q Consensus 215 ~~~~i~~l~~s~~g~--~l~t~s~Dg~i~iwd 244 (551)
..+.+.-+.+-|+++ .|++.-.||.+.||-
T Consensus 271 er~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 271 ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred ccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 344456677777764 688889999999997
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.7e-08 Score=99.71 Aligned_cols=208 Identities=14% Similarity=0.179 Sum_probs=142.8
Q ss_pred ccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEE
Q 008844 13 FPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLT 92 (551)
Q Consensus 13 ~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~ 92 (551)
..+++.. |.+.|.-+.|+.+.+.|-|...+|.|.||-+-.+.....+......+.|.+++|..+|..+...-.||.|.
T Consensus 63 mNQtLeG--H~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 63 MNQTLEG--HNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred hhhhhcc--CcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 3455555 88999999999999999999999999999998888776665554578899999999999999999999998
Q ss_pred EEEcCCCeEEEEEEcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 93 LWDVLKGEKITRIVLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
|=.+... .+.--... .....+.|+++.. .++..-.+|...++|....-...+.....-..++.. ..
T Consensus 141 VGsvdGN-RIwgKeLkg~~l~hv~ws~D~~---~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~---------s~ 207 (1189)
T KOG2041|consen 141 VGSVDGN-RIWGKELKGQLLAHVLWSEDLE---QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF---------SN 207 (1189)
T ss_pred EEeeccc-eecchhcchheccceeecccHH---HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee---------cC
Confidence 8776533 33222111 1233667777743 567777889999999876543322211100000000 00
Q ss_pred CCCCceEEEE--------eeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 172 PPFTPTAACF--------NKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 172 ~~~~i~~~~~--------s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
.+..+..++| -|+...|+++..+|.+.|..-.+......+ ...-.|..+.|+++|..|++++.+
T Consensus 208 ~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 208 FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE--ecccEeecceecCCCcEEEEccCc
Confidence 0112344444 256778999999999988866554443333 234678899999999999999764
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=6.9e-08 Score=96.33 Aligned_cols=183 Identities=13% Similarity=0.148 Sum_probs=118.2
Q ss_pred ceEEEEEEcCCCCE-EEEEeCC---CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE-eC--CCCEEEEEc
Q 008844 24 GVMKCIAFNRRGTL-LAAGCSD---GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS-AA--DKSLTLWDV 96 (551)
Q Consensus 24 ~~V~~l~fs~dg~~-latg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~--dg~i~vwd~ 96 (551)
+.+....|+|||+. ++..+.. ..|.++|+.+++...... . .+.+....|+|||+.|+.. +. +..|.++++
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~--~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S--QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C--CCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 36778999999984 6654433 569999998887654443 2 4556678899999877654 33 346777788
Q ss_pred CCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC--CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS--APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
.++................|+|++.. ++++....+ .|+++++.++....+... +
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~--I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~------------------g---- 320 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKR--IVFVSDRLGYPNIFMKKLNSGSVEQVVFH------------------G---- 320 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCE--EEEEECCCCCceEEEEECCCCCeEeCccC------------------C----
Confidence 77764433333323456689998753 444444444 567777777765433210 0
Q ss_pred CceEEEEeeCCCEEEEEecC---------ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 175 TPTAACFNKYGDLVYVGNSK---------GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
. ....|+|+|++|+..... ..|.+.|+.++....... . .......|+|||+.|+..+..
T Consensus 321 ~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~--~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA--N-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC--C-CCcCCeEECCCCCEEEEEEcc
Confidence 1 123799999988776543 378999998887654432 2 233458899999988766543
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=4.3e-07 Score=81.17 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=89.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeccCC--ceeeEeecc-cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 29 IAFNRRGTLLAAGCSDGSCVIWDFETR--GIAKELRDK-ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 29 l~fs~dg~~latg~~dg~I~iwd~~~~--~~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
++.+.+|++||.- .|..|.|-..... .++...... ...-.=.-++||||+.+|+.+...|+|+++|+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5678899999876 5677777655432 122222211 1123456799999999999999999999999864 444444
Q ss_pred EcC--------CCeeEEEEecCC---CCCcEEEEeeCCCCcEEEEcCCC--ce--eeeccccCCCCCCCCCCCCCCCCCC
Q 008844 106 VLQ--------QTPLQARLHPGS---STPSLCLACPLSSAPMIVDLSTG--ST--SILPIAVPDVANGIAPSSRNKYSDG 170 (551)
Q Consensus 106 ~~~--------~~~~~~~~~p~~---~~~~~~~~~~~~~~i~i~d~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (551)
... ..+..+.|.... .....+++....|.++-|-+..+ +. ......+ ..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf----------------~~ 144 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF----------------SS 144 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe----------------cc
Confidence 322 223444444322 22335667777777766655332 11 1111111 11
Q ss_pred CCCCCceEEEEeeCCCEEEEEecC
Q 008844 171 TPPFTPTAACFNKYGDLVYVGNSK 194 (551)
Q Consensus 171 ~~~~~i~~~~~s~~g~~l~~g~~d 194 (551)
..+..|++++|+|..++|++|+..
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccC
Confidence 234489999999999998888753
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=1.4e-07 Score=82.84 Aligned_cols=197 Identities=14% Similarity=0.037 Sum_probs=130.5
Q ss_pred EEEEEcC-----CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC-CCEEEEEeCCCCEEEEEcCCCe
Q 008844 27 KCIAFNR-----RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY-GHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 27 ~~l~fs~-----dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
..+.|.| .-.+||.|+.-|...+|...+.+....+-. .|...|+-+.=..+ .--+..++.|.++++.++..+.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence 3455655 335899999999999999987654333321 12333322111111 2246777889999999986554
Q ss_pred EEEEEEcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 101 KITRIVLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 101 ~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.-...... -....+.++++++ +.++.+....+.+|.+.............+... .-.+.
T Consensus 150 ~~~~~h~~~~~~ns~~~snd~~---~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D-----------------~gF~~ 209 (344)
T KOG4532|consen 150 NKFAVHNQNLTQNSLHYSNDPS---WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD-----------------HGFYN 209 (344)
T ss_pred ccceeeccccceeeeEEcCCCc---eEEEecCCCcceEEEeCCccceeeeeEecccCC-----------------Cceee
Confidence 33333332 2356777777754 778888889999999887765544322221111 44578
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEE----EeeeccCccceEEEEEeeCCC--EEEEeeCCCeEEEEe
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIR----ALVPVSGAAVIKNIVFSRNGQ--YLLTNSNDRTIRIYD 244 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~----~~~~~~~~~~i~~l~~s~~g~--~l~t~s~Dg~i~iwd 244 (551)
.|+.....+|++..||++.|||++..... ......|.+.++.+.|++-|. +|+..-.-+.+.+.|
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 89999999999999999999999975542 222336899999999998664 455555567888888
No 288
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.00 E-value=4.7e-07 Score=83.46 Aligned_cols=252 Identities=15% Similarity=0.158 Sum_probs=154.5
Q ss_pred eEEEEEEcC-CCCEEEEEeCCCe-EEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC-----CCCEEEEEcC
Q 008844 25 VMKCIAFNR-RGTLLAAGCSDGS-CVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA-----DKSLTLWDVL 97 (551)
Q Consensus 25 ~V~~l~fs~-dg~~latg~~dg~-I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-----dg~i~vwd~~ 97 (551)
....++.+| .+..+|.+-.-|+ ..+||..+++....+....-..--=.-.||+||++|++.-. .|.|-|||+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345778889 5667777877665 77899999998877654311111113579999999998633 6889999998
Q ss_pred -CCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 98 -KGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 98 -~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
+-..+..+..+. .+..+.+.|++.. ++++.+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~t--LvVANGG-------------------------------------------- 119 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGET--LVVANGG-------------------------------------------- 119 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCE--EEEEcCC--------------------------------------------
Confidence 556666665543 4566677776531 2222110
Q ss_pred ceEEEEeeCC--CEEEEEecCceEEEEECCCCcEEEeeec---cCccceEEEEEeeCCCEEEEeeCCCe-------EEEE
Q 008844 176 PTAACFNKYG--DLVYVGNSKGEILVIDHKSNQIRALVPV---SGAAVIKNIVFSRNGQYLLTNSNDRT-------IRIY 243 (551)
Q Consensus 176 i~~~~~s~~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~l~~s~~g~~l~t~s~Dg~-------i~iw 243 (551)
+.-+|+. ..|-..+.+..|.+.|..+++++....+ .|...|..+++.++|..++..-..|- |-++
T Consensus 120 ---I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~ 196 (305)
T PF07433_consen 120 ---IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALH 196 (305)
T ss_pred ---CccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEE
Confidence 0001111 1233334456778888899988776443 36678999999999876665543332 2233
Q ss_pred eCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEe
Q 008844 244 DNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD 323 (551)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd 323 (551)
+.-.+ .+. + .........+...+- +|+++++|.++++.+-. .+.+.+||
T Consensus 197 ~~g~~----~~~----------------~----~~p~~~~~~l~~Y~g-----SIa~~~~g~~ia~tsPr--Gg~~~~~d 245 (305)
T PF07433_consen 197 RRGGA----LRL----------------L----PAPEEQWRRLNGYIG-----SIAADRDGRLIAVTSPR--GGRVAVWD 245 (305)
T ss_pred cCCCc----cee----------------c----cCChHHHHhhCCceE-----EEEEeCCCCEEEEECCC--CCEEEEEE
Confidence 20000 000 0 000011223334444 88999999999877764 58999999
Q ss_pred cC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcE
Q 008844 324 RA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWV 360 (551)
Q Consensus 324 ~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i 360 (551)
.. +.++....- ..+..++-.+++ +++|.+. |.+
T Consensus 246 ~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 246 AATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred CCCCCEeecccc--CceeeeeecCCc-eEEeCCC-ccE
Confidence 99 888877653 346777777776 6666653 443
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.2e-08 Score=93.97 Aligned_cols=284 Identities=17% Similarity=0.186 Sum_probs=183.6
Q ss_pred cccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC---CceeeEeecccccccEEEEEecCCCCEEEEEeC-CCCEEEE
Q 008844 19 EYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET---RGIAKELRDKECVAAITSVCWSKYGHRILVSAA-DKSLTLW 94 (551)
Q Consensus 19 ~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~---~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~vw 94 (551)
.+.|...|+.+.-+ -.+++.+++.||.++.|.-.. -+.+..+.. |...|.+++.+-++.++.|.+. |..++++
T Consensus 5 symhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFra--HL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 5 SYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA--HLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred hhcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHH--HHHHHHhhhccccceeEeeccCcccceeEE
Confidence 45678888776543 567999999999999997653 123444444 4899999999999999999887 9999999
Q ss_pred EcCCCeEEEEEEcCCCeeEEEEec--CCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 95 DVLKGEKITRIVLQQTPLQARLHP--GSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
|+.+-..+..+.....+-.+.|.. +.....+.+....++.+.++|-....+... ....-|
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~------------------~fkklH 143 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG------------------YFKKLH 143 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc------------------eecccc
Confidence 999887776666655544444443 322223445556678899998766553321 122334
Q ss_pred CCCceEEEEeeCCCEEEEEecCceEEEEECCC------CcEEEeee--------ccCccceEEEEEeeCCCEEEEeeCCC
Q 008844 173 PFTPTAACFNKYGDLVYVGNSKGEILVIDHKS------NQIRALVP--------VSGAAVIKNIVFSRNGQYLLTNSNDR 238 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~------~~~~~~~~--------~~~~~~i~~l~~s~~g~~l~t~s~Dg 238 (551)
..+|.++.+++.+..+++....|.|.-|.... .+....+. ........++.|+|+|..+.+-+.|.
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence 44899999999999999999999999998873 11111110 03356788999999999999999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCC----CC-cceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeecc
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAE----PN-GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS 313 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~ 313 (551)
.||++.+.. .+..+.+...... +. ........-++.+...+.... ........++|...|++|+.|+.
T Consensus 224 kVR~F~~Kt-----GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek-~~~~~~~~~~fdes~~flly~t~- 296 (558)
T KOG0882|consen 224 KVRGFVFKT-----GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEK-HGSTVGTNAVFDESGNFLLYGTI- 296 (558)
T ss_pred EEEEEEecc-----chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhh-hcCcccceeEEcCCCCEEEeecc-
Confidence 999998322 2222222211100 00 000000000111111111111 11112237899999999999987
Q ss_pred CCcceEEEEecC-CceeEEEe
Q 008844 314 KGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 314 ~~dg~I~iwd~~-~~~~~~l~ 333 (551)
--|+|.++. +.+++.+.
T Consensus 297 ---~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 297 ---LGIKVINLDTNTVVRILG 314 (558)
T ss_pred ---eeEEEEEeecCeEEEEec
Confidence 348999998 77777653
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.96 E-value=3.5e-08 Score=86.20 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=112.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEE----------ecCCCCEEEEEeCCCCEEEEE
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVC----------WSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~----------~s~~g~~l~s~s~dg~i~vwd 95 (551)
|+.+.|+.+ ..|+++..++.+......++.+..........++..+++ .+-.++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 666666644 467777777776666554433322221110112222222 222356799999999999998
Q ss_pred cCCCeEE-EEEEc-CCCeeEEEEecCCCCCcEE-----EEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKI-TRIVL-QQTPLQARLHPGSSTPSLC-----LACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 96 ~~~~~~~-~~~~~-~~~~~~~~~~p~~~~~~~~-----~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
.+.-..+ ..+.. +......++... ..++ .....-+..++|+++...........
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~---~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~---------------- 178 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRH---GNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA---------------- 178 (319)
T ss_pred chHHHhhhhhcccccccccccceeec---ccEEecCCcceEeeccceeeecccccccccccccc----------------
Confidence 7652111 01100 001111111110 0111 11222334455555443332211110
Q ss_pred CCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee-CCCEEEEeeCCCeEEEEe
Q 008844 169 DGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR-NGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd 244 (551)
...+++++-+|.. +++++|+.+|.+.+||.+.......+...|..+|..+-|+| ++..|++++.||.+..||
T Consensus 179 ----~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 179 ----LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ----cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 1147888888876 66778899999999999998765555558999999999998 567899999999999999
No 291
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=1.9e-07 Score=83.10 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=109.7
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEE--eeeccCccceEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCcccc
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRA--LVPVSGAAVIKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
..++.|++.+..++++..+|.+.+.+.....+.. .++ .|.-.+....|+.. .+.+.+|+.|+.+..||++.|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--- 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--- 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---
Confidence 5678899999999999999999977766555433 554 78888888888864 4688999999999999954332
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC--Ccee
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA--GYLV 329 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~--~~~~ 329 (551)
.-.....+.|...|. ++.-+| .+.+|++|++ |-.|++||.+ ++++
T Consensus 200 ------------------------~~i~~n~kvH~~GV~-----SI~ss~~~~~~I~TGsY---De~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 200 ------------------------TFIWHNSKVHTSGVV-----SIYSSPPKPTYIATGSY---DECIRVLDTRNMGKPL 247 (339)
T ss_pred ------------------------ceeeecceeeecceE-----EEecCCCCCceEEEecc---ccceeeeehhcccCcc
Confidence 111222344555554 555554 6889999999 8999999999 8877
Q ss_pred EEEecCCCceEEEEEecCCC--eEEEEcCCCcEEEEecC
Q 008844 330 KILEGPKEALIDLAWHPVHP--IIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 330 ~~l~~h~~~v~~l~~sp~~~--~l~s~s~dg~i~iW~~~ 366 (551)
..-. -.+.|..+.++|.-. .|++|-..| .+|-+++
T Consensus 248 ~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~ 284 (339)
T KOG0280|consen 248 FKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSS 284 (339)
T ss_pred ccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEec
Confidence 6544 247899999999754 445544444 4444444
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=9.9e-07 Score=97.88 Aligned_cols=216 Identities=17% Similarity=0.226 Sum_probs=138.2
Q ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeEeecccc---------------cccEEEEEecC-CCCEEEEEeCC
Q 008844 26 MKCIAFNRRGTLLAAGC-SDGSCVIWDFETRGIAKELRDKEC---------------VAAITSVCWSK-YGHRILVSAAD 88 (551)
Q Consensus 26 V~~l~fs~dg~~latg~-~dg~I~iwd~~~~~~~~~~~~~~h---------------~~~V~~l~~s~-~g~~l~s~s~d 88 (551)
...|+|+++++.|+++. ..+.|+++|+.++. +.++.+.+. -.....|+|+| ++.++++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 57889999888766654 45789999987654 444422110 11346799999 56666666778
Q ss_pred CCEEEEEcCCCeEEEEEEc----------------CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeecccc
Q 008844 89 KSLTLWDVLKGEKITRIVL----------------QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAV 152 (551)
Q Consensus 89 g~i~vwd~~~~~~~~~~~~----------------~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 152 (551)
+.|++||..++... .+.. -..+..+.++|++. .++++...++.|++||+.++.........
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--ELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCC--EEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 99999998776543 2211 12355688888753 36777788899999999887643221100
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc------------Cccce
Q 008844 153 PDVANGI-APSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS------------GAAVI 219 (551)
Q Consensus 153 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~------------~~~~i 219 (551)
....... .............-..+..++++++|+++++-+.++.|++||..++........+ .-...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 0000000 0000000000001124568999999998888888999999999888765443211 11256
Q ss_pred EEEEEeeCCCEEEEeeCCCeEEEEeC
Q 008844 220 KNIVFSRNGQYLLTNSNDRTIRIYDN 245 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~i~iwd~ 245 (551)
..|+++++|+.+++.+.++.|++||+
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 78999999998888889999999994
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=3.6e-08 Score=91.47 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=112.5
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcE----EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcc
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI----RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLK 250 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~ 250 (551)
.+..+..++.+++||++.......++++..... +... .-...-+.+.|..+.....++..-|-++-+|++..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~-- 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA-- 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeecc--
Confidence 455566788899999999988887777765432 2222 22233345555555555555544444444442211
Q ss_pred ccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Ccee
Q 008844 251 NGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLV 329 (551)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~ 329 (551)
. ..+....-+|...++ .++||||+++|+++.. |..|+|-... ...+
T Consensus 140 ------------------------~-~~~~~~~lGhvSml~-----dVavS~D~~~IitaDR---DEkIRvs~ypa~f~I 186 (390)
T KOG3914|consen 140 ------------------------D-SGRCEPILGHVSMLL-----DVAVSPDDQFIITADR---DEKIRVSRYPATFVI 186 (390)
T ss_pred ------------------------c-ccCcchhhhhhhhhh-----eeeecCCCCEEEEecC---CceEEEEecCcccch
Confidence 1 133555667888888 8999999999999999 9999998887 3333
Q ss_pred E-EEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 330 K-ILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 330 ~-~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
. -+-||+.-|..++.-++.. |+|+|.|++|++|++.++....
T Consensus 187 esfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 187 ESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred hhhccccHhheeeeeeccCce-eeecCCCCcEEEEecccCCccc
Confidence 3 3457999999999977654 8999999999999999987654
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=2.1e-06 Score=79.65 Aligned_cols=222 Identities=20% Similarity=0.209 Sum_probs=137.0
Q ss_pred CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCC
Q 008844 44 DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTP 123 (551)
Q Consensus 44 dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 123 (551)
+|+|..||..+|+.+.......-.....+. ..+++.++++++.++.|..||..+|+.+..+.............+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~---- 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG---- 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET----
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc----
Confidence 689999999999988887542101222221 222466788888999999999999999999987654332222222
Q ss_pred cEEEEeeCCCCcEEEEcCCCceeeec-cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEEC
Q 008844 124 SLCLACPLSSAPMIVDLSTGSTSILP-IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDH 202 (551)
Q Consensus 124 ~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~ 202 (551)
..+++...++.+..+|..+++..... ....+... ....+.....+..++++..+|.|..+|+
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-----------------VRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-----------------TB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccc-----------------cccccCceEecCEEEEEeccCcEEEEec
Confidence 24566667789999999999876552 22111000 1112222333788999999999999999
Q ss_pred CCCcEEEeeeccCccc---------eEEEEEeeCCCEEEEeeCCCe-EEEEeCcCCccccchhhhhhhccCCCCCcceee
Q 008844 203 KSNQIRALVPVSGAAV---------IKNIVFSRNGQYLLTNSNDRT-IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKM 272 (551)
Q Consensus 203 ~~~~~~~~~~~~~~~~---------i~~l~~s~~g~~l~t~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (551)
.+|+.+.......... +..-.+..++ .++.++.++. +.+ |+.
T Consensus 140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~-------------------------- 191 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLA-------------------------- 191 (238)
T ss_dssp TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETT--------------------------
T ss_pred CCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECC--------------------------
Confidence 9999988776422111 1122222244 6666666774 444 721
Q ss_pred eeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Ccee
Q 008844 273 KMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLV 329 (551)
Q Consensus 273 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~ 329 (551)
++..+ ........ ......++..|++++. ++.|++||+. |+.+
T Consensus 192 ---tg~~~--w~~~~~~~------~~~~~~~~~~l~~~~~---~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 192 ---TGEKL--WSKPISGI------YSLPSVDGGTLYVTSS---DGRLYALDLKTGKVV 235 (238)
T ss_dssp ---TTEEE--EEECSS-E------CECEECCCTEEEEEET---TTEEEEEETTTTEEE
T ss_pred ---CCCEE--EEecCCCc------cCCceeeCCEEEEEeC---CCEEEEEECCCCCEE
Confidence 12212 11111111 1124577888888887 8999999999 7765
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=7.5e-09 Score=93.81 Aligned_cols=151 Identities=18% Similarity=0.280 Sum_probs=116.6
Q ss_pred EEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC-
Q 008844 127 LACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN- 205 (551)
Q Consensus 127 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~- 205 (551)
++.+.+..+.+.++.++....+. ....|.++.|...+++++.|+.+|.|..+|++.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~----------------------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ----------------------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred ecccccceeEEEEeecccccccc----------------------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecc
Confidence 66677778888888888765442 1227788889888999999999999999999875
Q ss_pred ----cEEEeeeccCccceEEEEEee-CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeecccee-
Q 008844 206 ----QIRALVPVSGAAVIKNIVFSR-NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKC- 279 (551)
Q Consensus 206 ----~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 279 (551)
.+...+ .|...|+++..-. ++++|++.+.+|+|.+||.+. .+|
T Consensus 286 qG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-----------------------------~K~~ 334 (425)
T KOG2695|consen 286 QGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-----------------------------TKCK 334 (425)
T ss_pred cCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeeehh-----------------------------hhcc
Confidence 234444 7899999998877 788999999999999999332 333
Q ss_pred --eeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC
Q 008844 280 --LALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK 336 (551)
Q Consensus 280 --~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~ 336 (551)
+..+.+|......+ -+...+....|++++. |...+||.+. |.++..+....
T Consensus 335 ~~V~qYeGHvN~~a~l---~~~v~~eeg~I~s~Gd---DcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 335 KSVMQYEGHVNLSAYL---PAHVKEEEGSIFSVGD---DCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cceeeeeccccccccc---ccccccccceEEEccC---eeEEEEEecccCceeeccCCCC
Confidence 55666665544322 4466777888888888 9999999999 99999887544
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.80 E-value=6e-06 Score=82.77 Aligned_cols=269 Identities=14% Similarity=0.124 Sum_probs=156.2
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEE-EEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITS-VCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQ 113 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~-l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 113 (551)
+..|+.++.+|.|.-+|..+|+.+...... ..+.+ ... .+..++.+..++.|..+|..+|+.+..+....+...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA---GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC---CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 456777888999999999999988777543 22221 112 244677777899999999999999988875432111
Q ss_pred E--EEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE
Q 008844 114 A--RLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG 191 (551)
Q Consensus 114 ~--~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g 191 (551)
. ...|.-. ...++.+..++.+..++..+++............. ........ ...+..+ .+..++++
T Consensus 195 ~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~------~~~~~~~~---~~~sP~v--~~~~vy~~ 262 (394)
T PRK11138 195 LRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA------TEIDRLVD---VDTTPVV--VGGVVYAL 262 (394)
T ss_pred ccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCc------cchhcccc---cCCCcEE--ECCEEEEE
Confidence 1 0111100 11466677888899999988875432110000000 00000000 0001111 24567788
Q ss_pred ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCccee
Q 008844 192 NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEK 271 (551)
Q Consensus 192 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (551)
+.+|.+..+|..+++.+....... ...+. ..+..|++++.+|.+..+|...
T Consensus 263 ~~~g~l~ald~~tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~t------------------------ 313 (394)
T PRK11138 263 AYNGNLVALDLRSGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRG------------------------ 313 (394)
T ss_pred EcCCeEEEEECCCCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCC------------------------
Confidence 889999999999999876653221 11222 2456777788899999988211
Q ss_pred eeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEE-EEEecCCC
Q 008844 272 MKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALID-LAWHPVHP 349 (551)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~-l~~sp~~~ 349 (551)
+..+-......... +.+..+ .+.+|+.++. +|.|+++|.. |+.+.....+...+.+ ..+ .+.
T Consensus 314 -----G~~~W~~~~~~~~~----~~sp~v--~~g~l~v~~~---~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~ 377 (394)
T PRK11138 314 -----GVELWSQSDLLHRL----LTAPVL--YNGYLVVGDS---EGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADD 377 (394)
T ss_pred -----CcEEEcccccCCCc----ccCCEE--ECCEEEEEeC---CCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECC
Confidence 11110000000011 112222 2567777887 8999999998 9888777644333332 222 244
Q ss_pred eEEEEcCCCcEEEEec
Q 008844 350 IIVSVSLTGWVYIWAK 365 (551)
Q Consensus 350 ~l~s~s~dg~i~iW~~ 365 (551)
.|+.++.||.|+.+++
T Consensus 378 ~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 378 KLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCceEEEEeC
Confidence 7888888999988764
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.79 E-value=2.5e-06 Score=75.20 Aligned_cols=260 Identities=8% Similarity=-0.065 Sum_probs=150.4
Q ss_pred CCCeEEEEeccCCc--eeeEeecccccccEEEEEecC-----CCCEEEEEeCCCCEEEEEcCCCeEEEEE-EcCCC-eeE
Q 008844 43 SDGSCVIWDFETRG--IAKELRDKECVAAITSVCWSK-----YGHRILVSAADKSLTLWDVLKGEKITRI-VLQQT-PLQ 113 (551)
Q Consensus 43 ~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~s~-----~g~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~-~~~ 113 (551)
....|-+|++-+.. .+... +.|.|.| ...+|+.|+.-|.+.+|...+.+....+ ..+.. +..
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y---------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~ 120 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY---------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL 120 (344)
T ss_pred ceeeeEeccccCCchhhEEee---------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhh
Confidence 34567788776543 22222 3345544 3458999999999999998765533322 22211 111
Q ss_pred EEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec
Q 008844 114 ARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS 193 (551)
Q Consensus 114 ~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~ 193 (551)
..-.- ....-+..++.+.+++++++..+......... ...+.+++++++++++++.+.
T Consensus 121 ~~r~c--d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~--------------------~~~~ns~~~snd~~~~~~Vgd 178 (344)
T KOG4532|consen 121 VKRYC--DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ--------------------NLTQNSLHYSNDPSWGSSVGD 178 (344)
T ss_pred hhhhc--ccccceeeccCCcceeEEEEecCcccceeecc--------------------ccceeeeEEcCCCceEEEecC
Confidence 00000 11224677788888888877765543221110 014788999999999999999
Q ss_pred CceEEEEECCCCcE--EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCccee
Q 008844 194 KGEILVIDHKSNQI--RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEK 271 (551)
Q Consensus 194 dg~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (551)
...|..|.+..... ..+........-.+..|+.....+|++..||++.|||++.-... .
T Consensus 179 s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp-m------------------ 239 (344)
T KOG4532|consen 179 SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP-M------------------ 239 (344)
T ss_pred CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc-h------------------
Confidence 99999998865432 33232244455567889999999999999999999994321100 0
Q ss_pred eeeccceeeeeecccccccceeeeeeeEEcCCCC--EEEEeeccCCcceEEEEecC-CceeEEEec-------CC-CceE
Q 008844 272 MKMVGSKCLALFREFQDSITKMHWKAPCFSGDGE--WVIAGSASKGEHKIYIWDRA-GYLVKILEG-------PK-EALI 340 (551)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~--~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~-------h~-~~v~ 340 (551)
...-..-..|.+.+. .+.|++-|- +|+..-. -+.+.+.|++ +.-...+.. |. ..|.
T Consensus 240 -----~~~sstrp~hnGa~R-----~c~Fsl~g~lDLLf~sEh---fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if 306 (344)
T KOG4532|consen 240 -----AEISSTRPHHNGAFR-----VCRFSLYGLLDLLFISEH---FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF 306 (344)
T ss_pred -----hhhcccCCCCCCceE-----EEEecCCCcceEEEEecC---cceEEEEEcccCceeeEEecCccccccccccccc
Confidence 000011112555555 889998553 3333333 5789999998 554444332 22 2255
Q ss_pred EEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 341 DLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 341 ~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
.-.|+.++.-+.+.+.+ .+.=|++.
T Consensus 307 gt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 307 GTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred cccccCCCcccccccch-hhheeecc
Confidence 55565555544444432 23344443
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=2.4e-06 Score=78.87 Aligned_cols=213 Identities=15% Similarity=0.181 Sum_probs=130.9
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC-----CCeEEEEecc-CCceeeEeecccccccEEEEEec
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS-----DGSCVIWDFE-TRGIAKELRDKECVAAITSVCWS 76 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~-----dg~I~iwd~~-~~~~~~~~~~~~h~~~V~~l~~s 76 (551)
+.+||+.++..+..+..-...---=.-+||+||++|++.-. .|.|-|||.. +.+.+..+..+ .-....|.+.
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~--GIGPHel~l~ 107 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH--GIGPHELLLM 107 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC--CcChhhEEEc
Confidence 35788998888776654221111124579999999998643 4889999998 66677777665 5556778899
Q ss_pred CCCCEEEEEeC------------------CCCEEEEEcCCCeEEEEEEcCC-----CeeEEEEecCCCCCcEEEEeeCCC
Q 008844 77 KYGHRILVSAA------------------DKSLTLWDVLKGEKITRIVLQQ-----TPLQARLHPGSSTPSLCLACPLSS 133 (551)
Q Consensus 77 ~~g~~l~s~s~------------------dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~~~~ 133 (551)
|||+.|+++.. +-.+.+.|..+|+.+....... .+..+.+.+++. +++.+-..+
T Consensus 108 pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~---V~~a~Q~qg 184 (305)
T PF07433_consen 108 PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT---VAFAMQYQG 184 (305)
T ss_pred CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc---EEEEEecCC
Confidence 99988887631 3346667778888887766532 345555665542 333332222
Q ss_pred C-----cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-CceEEEEECCCCcE
Q 008844 134 A-----PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-KGEILVIDHKSNQI 207 (551)
Q Consensus 134 ~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-dg~i~i~d~~~~~~ 207 (551)
. ..+.-.+.+..... +.... .....-...+-++++++++.++++++- -|.+.+||..+++.
T Consensus 185 ~~~~~~PLva~~~~g~~~~~-~~~p~------------~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 185 DPGDAPPLVALHRRGGALRL-LPAPE------------EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred CCCccCCeEEEEcCCCccee-ccCCh------------HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 1 12222222221110 00000 000111127889999999998877765 56899999999999
Q ss_pred EEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 208 ~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
+.... -..+..++..+++ ++++.+.-
T Consensus 252 ~~~~~---l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 252 LGSVP---LPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred eeccc---cCceeeeeecCCc-eEEeCCCc
Confidence 87764 3345667777666 56655443
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=5.6e-08 Score=93.38 Aligned_cols=239 Identities=14% Similarity=0.166 Sum_probs=156.1
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-------CeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcE
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK-------GEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPM 136 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~-------~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~ 136 (551)
+|...|..++--.+.+.+++++.|++|++|.++. ..+..++..|. ++..+.|..+ +-...+.|+.+.
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-----lr~i~ScD~giH 807 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-----LRSIASCDGGIH 807 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-----cceeeeccCcce
Confidence 4588899888877888999999999999999853 23455555554 4555656554 235567899999
Q ss_pred EEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE-ecCceEEEEECCCCcEEEeeec--
Q 008844 137 IVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG-NSKGEILVIDHKSNQIRALVPV-- 213 (551)
Q Consensus 137 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~-- 213 (551)
+||--.+.........+.. +....|.|+- +-+..++++| +...+|+++|.+.+.....+..
T Consensus 808 lWDPFigr~Laq~~dapk~---------------~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKE---------------GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred eecccccchhHhhhcCccc---------------CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc
Confidence 9997666543211111100 0001222221 2234455555 6788999999999887665543
Q ss_pred --cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccc
Q 008844 214 --SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSIT 291 (551)
Q Consensus 214 --~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 291 (551)
..+..+++++..+.|++|+++-..|.|.+.| .+++..+..++.......
T Consensus 872 a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD-----------------------------aR~G~vINswrpmecdll 922 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADKGNKLAAALSNGCIAILD-----------------------------ARNGKVINSWRPMECDLL 922 (1034)
T ss_pred CCCCchheeEEEeccCcchhhHHhcCCcEEEEe-----------------------------cCCCceeccCCcccchhh
Confidence 2346789999999999999999999999999 223444444554444433
Q ss_pred eeeeeeeEEcCCCCEEEEeeccCCcceEEE-EecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 292 KMHWKAPCFSGDGEWVIAGSASKGEHKIYI-WDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 292 ~~~~~~~~~s~dg~~l~~gs~~~~dg~I~i-wd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.++ .|..+.|+.... ++.+.+ |... |......+.+..+..-+. .-|+.|+++.....+.||.
T Consensus 923 -----qla-apsdq~L~~sal---dHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 923 -----QLA-APSDQALAQSAL---DHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred -----hhc-CchhHHHHhhcc---cceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence 222 356677777777 889998 9877 766666665544433222 2467788887777777775
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.73 E-value=2.2e-07 Score=86.28 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=107.0
Q ss_pred cEEEEEecCCCCEEEEEeCCCCEEEEEcCCC----eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEc---C
Q 008844 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKG----EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDL---S 141 (551)
Q Consensus 69 ~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~---~ 141 (551)
.+..+..++.+++|+.+..+....++++... +++...........+.+..... ..+.+..-|.++.+|+ .
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~---sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT---SVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc---eEEEEeecCCceeeeeeccc
Confidence 4455667888899998888888777776543 3344445555555555555433 2333333444443333 2
Q ss_pred CCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEE
Q 008844 142 TGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKN 221 (551)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 221 (551)
.+... ...+|-..++.++|+||+++|+++..|..|+|-.......+..+..+|...|..
T Consensus 141 ~~~~~---------------------~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 141 SGRCE---------------------PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVST 199 (390)
T ss_pred ccCcc---------------------hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheee
Confidence 22221 122344489999999999999999999999999998888888888899999999
Q ss_pred EEEeeCCCEEEEeeCCCeEEEEe
Q 008844 222 IVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 222 l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
++.-++ +.|++++.|++|++||
T Consensus 200 isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 200 ISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred eeeccC-ceeeecCCCCcEEEEe
Confidence 999865 4599999999999999
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.72 E-value=4.4e-08 Score=61.79 Aligned_cols=39 Identities=26% Similarity=0.549 Sum_probs=37.1
Q ss_pred CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 326 GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 326 ~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
|+++..+.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 302
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.8e-06 Score=78.24 Aligned_cols=273 Identities=10% Similarity=0.079 Sum_probs=155.5
Q ss_pred EEEEeccCCceeeEeecccccccEEEEEecCCCC-EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcE
Q 008844 47 CVIWDFETRGIAKELRDKECVAAITSVCWSKYGH-RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSL 125 (551)
Q Consensus 47 I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 125 (551)
|++.+..+.+....+ +.|...|..|+|||..+ +|..++.+.+|+|.|+++...+..+..+..+.+++|.-+. .++
T Consensus 175 v~~l~~~~fkssq~l--p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde--~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQIL--PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE--RHV 250 (463)
T ss_pred eEEeccCCcchhhcc--cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC--cce
Confidence 444444444444433 34588999999999776 7888999999999999999999999999999999999876 558
Q ss_pred EEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE------EEeeCCCEEEEEecCceEEE
Q 008844 126 CLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA------CFNKYGDLVYVGNSKGEILV 199 (551)
Q Consensus 126 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~s~~g~~l~~g~~dg~i~i 199 (551)
+.++...|.|.+||++............-..+ +|..+ ...+.|.+++..... +..
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~-----------------pv~~i~~~~~n~~f~~gglLv~~lt~--l~f 311 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTIN-----------------PVHKIAPVQPNKIFTSGGLLVFALTV--LQF 311 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccC-----------------cceeecccCccccccccceEEeeehh--hhh
Confidence 99999999999999998765443322111000 11111 223334444444433 344
Q ss_pred EECCC--CcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccc
Q 008844 200 IDHKS--NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGS 277 (551)
Q Consensus 200 ~d~~~--~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (551)
|.+.- +.....++....+...++++.+-.++++.....+ |.....+. +.......+ +
T Consensus 312 ~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~---------pn~p~~r~---il~~~d~~d---------G 370 (463)
T KOG1645|consen 312 YEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSN---------PNFPQSRF---ILGRIDFRD---------G 370 (463)
T ss_pred hhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCC---------CCCcccee---eeeeecccc---------C
Confidence 54432 2222333334456666677766555555443221 00000000 000000000 0
Q ss_pred eeee-eeccc-ccccceeeee-eeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecC-C-CeE
Q 008844 278 KCLA-LFREF-QDSITKMHWK-APCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPV-H-PII 351 (551)
Q Consensus 278 ~~~~-~~~~~-~~~v~~~~~~-~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~-~-~~l 351 (551)
..+. .-..+ ...-+++.-+ .+.-.++.++|+.-+.+ .+.+.+||.. ++.+..+.- ..+|.+++.... + .+|
T Consensus 371 ~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~--tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syL 447 (463)
T KOG1645|consen 371 FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS--TNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYL 447 (463)
T ss_pred ceeeeecccccCCcccccccccceeccccccEEEEecCC--cceeEEeccchhheeeeccc-CcceeecceeecCCcchh
Confidence 0000 00011 1111111111 22234566666654432 6889999999 888888874 478888876443 3 366
Q ss_pred EEEcCCCcEEEEecCC
Q 008844 352 VSVSLTGWVYIWAKDY 367 (551)
Q Consensus 352 ~s~s~dg~i~iW~~~~ 367 (551)
++-. |..++|+..+.
T Consensus 448 a~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 448 ALLT-DDRVHIYKNES 462 (463)
T ss_pred hhee-cceEEEEecCC
Confidence 6655 67888887653
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.71 E-value=1.6e-07 Score=95.74 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=120.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC---------CCCEEEEEc
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA---------DKSLTLWDV 96 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---------dg~i~vwd~ 96 (551)
|+-++. ++++|.+|...|+|.+-|..+.+.++++..| ++.|..+.. .|++|++||. |.-|+|||+
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH--s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH--SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc--ccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 444443 6789999999999999999999999999877 899988776 4889999985 667899999
Q ss_pred CCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEc---CCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDL---STGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
+.-+.+.-+..+..+..++|+|. ....+++++..|+..+.|. .........+.. ..
T Consensus 254 Rmmral~PI~~~~~P~flrf~Ps--l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p-------------------~~ 312 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGPQFLRFHPS--LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP-------------------NG 312 (1118)
T ss_pred hhhhccCCcccccCchhhhhccc--ccceEEEEecccceeeccccccCCCccceeEEcc-------------------CC
Confidence 99988888888888889999994 3557889999999999983 333221111111 11
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEEC
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDH 202 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~ 202 (551)
..+..++++++|+.++.|..+|.|.+|--
T Consensus 313 s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 313 SGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CcceeEEecCCCceEEEecccCcEeeecC
Confidence 15889999999999999999999999973
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.70 E-value=8.3e-06 Score=86.30 Aligned_cols=284 Identities=13% Similarity=0.157 Sum_probs=155.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
..|.++.|..++.-|+.+...|.|.+-|.++..... -+. ....|.+++||||+..++..+..+++.+-. .+..++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~-vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGN-VDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee--eee-ccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence 578999999999999999999999999888765322 121 268899999999999999988777775543 3333333
Q ss_pred EEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee
Q 008844 104 RIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK 183 (551)
Q Consensus 104 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 183 (551)
....+... .+ ...++.++....-.-+.-..++........... ..........=+.++|-.
T Consensus 145 E~~L~~d~-----~~----~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek----------~~~~~~~~~~~~~IsWRg 205 (1265)
T KOG1920|consen 145 EKPLDADD-----ER----KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK----------ALEQIEQDDHKTSISWRG 205 (1265)
T ss_pred cccccccc-----cc----ccccceecccccceeeecchhhhcccccccccc----------cccchhhccCCceEEEcc
Confidence 33221110 00 001122222111111111111100000000000 000000111345799999
Q ss_pred CCCEEEEEe-----cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee---CCCeEEEEeCcCCccccchh
Q 008844 184 YGDLVYVGN-----SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS---NDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 184 ~g~~l~~g~-----~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s---~Dg~i~iwd~~~~~~~~~~~ 255 (551)
||.++++.. ....|+|||.. +.+-.+-. +..+.-.+++|-|.|..+++-. .|+.|.+|. ... .+
T Consensus 206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNG----L~- 277 (1265)
T KOG1920|consen 206 DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNG----LR- 277 (1265)
T ss_pred CCcEEEEEEEeccCCceeEEEeccc-chhhcccC-cccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCC----cc-
Confidence 999999842 23689999987 44322221 3334456799999999888763 466799998 110 00
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---CceeEEE
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GYLVKIL 332 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~~~~~l 332 (551)
-+.....+......+. .++|+.++..||+-........|++|-+. ..+-+.+
T Consensus 278 --------------------hg~f~l~~p~de~~ve-----~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 278 --------------------HGEFVLPFPLDEKEVE-----ELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred --------------------ccccccCCcccccchh-----eeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEE
Confidence 0111111111222244 88999999999984332214569999887 3344445
Q ss_pred ecCCCceEEEEEecCCC-eEEEEcCCCcEEEEec
Q 008844 333 EGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAK 365 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~ 365 (551)
....... +.|+|... .|..-..+|.+.++++
T Consensus 333 ~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 333 QFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 4443333 77877544 2333334555544443
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=9.3e-06 Score=82.86 Aligned_cols=219 Identities=16% Similarity=0.235 Sum_probs=134.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC-----CEEEEEcCCC
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK-----SLTLWDVLKG 99 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg-----~i~vwd~~~~ 99 (551)
.|+| |++.+..+|.|+.+|.|.+.+-. -+.++.+..+.|. -|..+.......+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 5555 67888999999999999888643 4444667666333 355555444447888887765 4899998643
Q ss_pred eEEEEEEcCCCeeEE---EEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 100 EKITRIVLQQTPLQA---RLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
. ...++.++ +..+. .....++++
T Consensus 103 ~------~n~sP~c~~~~ri~~~------------------------------------------------~np~~~~p~ 128 (933)
T KOG2114|consen 103 D------KNNSPQCLYEHRIFTI------------------------------------------------KNPTNPSPA 128 (933)
T ss_pred C------CCCCcceeeeeeeecc------------------------------------------------CCCCCCCcc
Confidence 2 11111111 11110 001123388
Q ss_pred eEEEEeeCCCEEEEEecCceEEEEECC---CCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccc
Q 008844 177 TAACFNKYGDLVYVGNSKGEILVIDHK---SNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i~d~~---~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
++++.+.+-+.+|+|-.+|.|..+.-. .......+......+|+++++..+++.++....-..|.+|.+. .
T Consensus 129 s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-g----- 202 (933)
T KOG2114|consen 129 SSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-G----- 202 (933)
T ss_pred eEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-C-----
Confidence 899999999999999999999998532 1222333433668999999999998874444455678888721 1
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
. ...+..+..+....+ +.+|++...-++++.. ..|++|+.. ..+...+
T Consensus 203 ---------------------r-~p~~~~ld~~G~~ln-----Css~~~~t~qfIca~~----e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 203 ---------------------R-TPSLKVLDNNGISLN-----CSSFSDGTYQFICAGS----EFLYFYDSDGRGPCFAF 251 (933)
T ss_pred ---------------------C-CcceeeeccCCccce-----eeecCCCCccEEEecC----ceEEEEcCCCcceeeee
Confidence 1 112333444444444 6677765442444442 479999998 4444455
Q ss_pred e-cCCCc
Q 008844 333 E-GPKEA 338 (551)
Q Consensus 333 ~-~h~~~ 338 (551)
. ||...
T Consensus 252 ~~g~kk~ 258 (933)
T KOG2114|consen 252 EVGEKKE 258 (933)
T ss_pred cCCCeEE
Confidence 5 66543
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.4e-06 Score=87.92 Aligned_cols=147 Identities=17% Similarity=0.300 Sum_probs=105.4
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
....++|++++ +++|+.|+.+|.|++++... .. .+...| ... ..+|.+++||+.||+|.|-.+-+.+.
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~--s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDH--SSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCC-cc-cccccc--ccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 34567888886 67999999999999998763 33 333333 333 55799999999999999999999998
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
...+.++.++..++++|+-..
T Consensus 106 ~~~~df~rpiksial~Pd~~~----------------------------------------------------------- 126 (846)
T KOG2066|consen 106 ITQYDFKRPIKSIALHPDFSR----------------------------------------------------------- 126 (846)
T ss_pred ceeEecCCcceeEEeccchhh-----------------------------------------------------------
Confidence 888888887777777775100
Q ss_pred eeCCCEEEEEecCceEEEEECCCCcE-EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 182 NKYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 182 s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
...+.+++|+..| +.++.-+-... .........++|.++.|. |.++|-++.+| |++||
T Consensus 127 -~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 127 -QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD 185 (846)
T ss_pred -hhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence 0135688888888 77765432111 111122568999999995 77888886555 89999
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=1.4e-07 Score=95.55 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=105.7
Q ss_pred eeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCC-Cc
Q 008844 58 AKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSS-AP 135 (551)
Q Consensus 58 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~-~i 135 (551)
.++|+ .|....+|++|+-+.++|+.|+..|.|+++++.+|.....+..|.. +..+.-+.+++ ..+.+++... -.
T Consensus 1094 w~~fr--d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs--~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1094 WRSFR--DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGS--TQLTSSSSSSPLS 1169 (1516)
T ss_pred chhhh--ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcc--eeeeeccccCchH
Confidence 34454 4488999999999999999999999999999999998888887764 44444444443 2333333333 46
Q ss_pred EEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec--
Q 008844 136 MIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-- 213 (551)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-- 213 (551)
.+|++..-........ .-.++.|+..-..-+.|+......|||++++..+.++..
T Consensus 1170 aLW~~~s~~~~~Hsf~-----------------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~ 1226 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD-----------------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT 1226 (1516)
T ss_pred HHhccccccCcccccc-----------------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc
Confidence 6888765222111000 345777877766667777777899999999987665321
Q ss_pred -cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcC
Q 008844 214 -SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLL 247 (551)
Q Consensus 214 -~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~ 247 (551)
.....-++..|+|+..+++ .||. +||++.
T Consensus 1227 ~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~ 1256 (1516)
T KOG1832|consen 1227 VTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRI 1256 (1516)
T ss_pred hhhhhhccccccCCCcceEe---eCce--eeeecc
Confidence 1222336788999888766 4553 788443
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=4.6e-05 Score=70.95 Aligned_cols=186 Identities=18% Similarity=0.168 Sum_probs=123.3
Q ss_pred EEEEEEc-CCCCEEEEEeCCCeEEEEeccCCceeeEeec--cc-ccccEEEEEecCCCCEEEEEeCC--------CCEEE
Q 008844 26 MKCIAFN-RRGTLLAAGCSDGSCVIWDFETRGIAKELRD--KE-CVAAITSVCWSKYGHRILVSAAD--------KSLTL 93 (551)
Q Consensus 26 V~~l~fs-~dg~~latg~~dg~I~iwd~~~~~~~~~~~~--~~-h~~~V~~l~~s~~g~~l~s~s~d--------g~i~v 93 (551)
...+++. ++|.++++ .. +.+.++|+.+++....+.. .. .....+.+++.++|++.++.... +.|..
T Consensus 42 ~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5667777 67665554 44 4466669988865544443 11 35778999999999977776543 45777
Q ss_pred EEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce--e--eeccccCCCCCCCCCCCCCCCCC
Q 008844 94 WDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST--S--ILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
++.. ++.......-..+..++|+|++. .++++-+..+.|..+++..... . ..........
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~--~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------------- 183 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGK--TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP------------- 183 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSS--EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-------------
T ss_pred ECCC-CeEEEEecCcccccceEECCcch--heeecccccceeEEEeccccccceeeeeeEEEcCCCC-------------
Confidence 7766 56555555556678999999864 3666778888899999864432 1 1111111100
Q ss_pred CCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEe-eCCCEEEEee
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFS-RNGQYLLTNS 235 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~t~s 235 (551)
..+..+++..+|++.++....+.|.+++.. ++.+..+..+ ...+++++|. ++.+.|++.+
T Consensus 184 ----g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 ----GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ----CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred ----cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 147789999999988888889999999988 8888877655 4589999995 5656555443
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.61 E-value=2.9e-05 Score=69.71 Aligned_cols=174 Identities=12% Similarity=0.260 Sum_probs=105.6
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccC------ccceEEEEEeeCC------CEEEEeeCCCeEEE
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG------AAVIKNIVFSRNG------QYLLTNSNDRTIRI 242 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~l~~s~~g------~~l~t~s~Dg~i~i 242 (551)
.-.-++|+||+.+||.+.+.|+|.+||+....+. .++..+ ...|..+.|.+.. ..|++-...|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 4567899999999999999999999999865443 332222 3567777776432 24666668888877
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc-----
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH----- 317 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg----- 317 (551)
|-+........+. .........+...|. ++++.|.-++|+.|+....+.
T Consensus 124 y~vs~gt~q~y~e---------------------~hsfsf~~~yp~Gi~-----~~vy~p~h~LLlVgG~~~~~~~~s~a 177 (282)
T PF15492_consen 124 YLVSVGTNQGYQE---------------------NHSFSFSSHYPHGIN-----SAVYHPKHRLLLVGGCEQNQDGMSKA 177 (282)
T ss_pred EEEEcccCCccee---------------------eEEEEecccCCCcee-----EEEEcCCCCEEEEeccCCCCCccccc
Confidence 7521110000000 000111112233444 778888877777666543111
Q ss_pred ---eEEEEecC-Cce---------------------eEEE--------ecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 318 ---KIYIWDRA-GYL---------------------VKIL--------EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 318 ---~I~iwd~~-~~~---------------------~~~l--------~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
-|..|.+- +.+ .+.+ ......|..|..||+|..||+...+|.|.+|+
T Consensus 178 ~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 178 SSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred cccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 24555432 110 0000 11245789999999999999999999999999
Q ss_pred cCCCCcceeec
Q 008844 365 KDYTENWSAFA 375 (551)
Q Consensus 365 ~~~~~~~~~~s 375 (551)
+..-.....|.
T Consensus 258 iPsL~~~~~W~ 268 (282)
T PF15492_consen 258 IPSLRLQRSWK 268 (282)
T ss_pred cCcchhhcccc
Confidence 98765444443
No 310
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.61 E-value=1.5e-05 Score=79.94 Aligned_cols=273 Identities=11% Similarity=0.027 Sum_probs=156.5
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEE-----EEEecC--CCCEEEEEeCCCCEEEEEcCCCeEEEEEE
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAIT-----SVCWSK--YGHRILVSAADKSLTLWDVLKGEKITRIV 106 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~-----~l~~s~--~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 106 (551)
.+..|++++.+|.|.-+|..+|+.+............. .+.-.| .+..++.++.++.+..+|..+|+.+....
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 35577778888999999999999877765431000000 000011 34567788889999999999999998887
Q ss_pred cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC
Q 008844 107 LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD 186 (551)
Q Consensus 107 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 186 (551)
....+...-...+ ..++.+..++.+..+|..+++............. .. ...+... .+.
T Consensus 148 ~~~~~~ssP~v~~----~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----------~~----~~~sP~v--~~~ 206 (394)
T PRK11138 148 VAGEALSRPVVSD----GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT-----------LR----GESAPAT--AFG 206 (394)
T ss_pred CCCceecCCEEEC----CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc-----------cc----CCCCCEE--ECC
Confidence 6554322111111 2566777889999999999986543221100000 00 0001111 133
Q ss_pred EEEEEecCceEEEEECCCCcEEEeeeccCc---cc---eEEEEEee--CCCEEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 187 LVYVGNSKGEILVIDHKSNQIRALVPVSGA---AV---IKNIVFSR--NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 187 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~---~~---i~~l~~s~--~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
.+++++.+|.+..+|..+++.+........ .. ...+..+| .+..+++++.+|.+..+|...
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t----------- 275 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS----------- 275 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC-----------
Confidence 577788899999999999987665432111 00 11111122 245677777889888888211
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC-
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK- 336 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~- 336 (551)
++.+-.. .... .. .+. ..+..|+.++. +|.|+.+|.. |+.+-......
T Consensus 276 ------------------G~~~W~~-~~~~-~~-----~~~--~~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 276 ------------------GQIVWKR-EYGS-VN-----DFA--VDGGRIYLVDQ---NDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred ------------------CCEEEee-cCCC-cc-----CcE--EECCEEEEEcC---CCeEEEEECCCCcEEEcccccCC
Confidence 1111000 0000 00 111 24566777777 7899999998 76554332111
Q ss_pred CceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 337 EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 337 ~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
....+... .+.+|+.++.+|.|++.|..+++.
T Consensus 326 ~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 326 RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 11222222 245778888899999999888764
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.57 E-value=3.2e-07 Score=91.36 Aligned_cols=145 Identities=17% Similarity=0.228 Sum_probs=101.8
Q ss_pred EEEEEecCceEEEEECCC--CcEEEeeeccCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccC
Q 008844 187 LVYVGNSKGEILVIDHKS--NQIRALVPVSGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGI 263 (551)
Q Consensus 187 ~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (551)
+-++..+...-.+|++.. ...+..+..+|...|+.+.|.|.. ..|++++.|-.+..||+..|.
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-------------- 148 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-------------- 148 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--------------
Confidence 344444455566777653 233444445899999999999865 478999999999999955442
Q ss_pred CCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC--CceeEEEecCCCceE
Q 008844 264 AEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPKEALI 340 (551)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~~v~ 340 (551)
..+..+........ .+.|+. ++..+|+ +. ...|++||+. +.++..+++|...|+
T Consensus 149 --------------~p~ys~~~w~s~as-----qVkwnyk~p~vlas-sh---g~~i~vwd~r~gs~pl~s~K~~vs~vn 205 (1081)
T KOG0309|consen 149 --------------RPFYSTSSWRSAAS-----QVKWNYKDPNVLAS-SH---GNDIFVWDLRKGSTPLCSLKGHVSSVN 205 (1081)
T ss_pred --------------cceeeeecccccCc-----eeeecccCcchhhh-cc---CCceEEEeccCCCcceEEecccceeee
Confidence 22333333333333 567766 4444444 44 4779999999 788999999999999
Q ss_pred EEEEecC-CCeEEEEcCCCcEEEEecCCC
Q 008844 341 DLAWHPV-HPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 341 ~l~~sp~-~~~l~s~s~dg~i~iW~~~~~ 368 (551)
.++|..- ...+.+++.||+|++|+.+..
T Consensus 206 ~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 206 SIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 9998653 347888999999999998753
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.56 E-value=9.5e-05 Score=68.46 Aligned_cols=219 Identities=18% Similarity=0.141 Sum_probs=129.0
Q ss_pred CCCEEEEEcCCCeEEEEEEcCCCeeEE---EEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCC
Q 008844 88 DKSLTLWDVLKGEKITRIVLQQTPLQA---RLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSR 164 (551)
Q Consensus 88 dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (551)
+++|..||..+|+.+............ .+..++ .++++..++.++.||..+++....... ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~---------- 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGG----RVYVASGDGNLYALDAKTGKVLWRFDL-PG---------- 66 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETT----EEEEEETTSEEEEEETTTSEEEEEEEC-SS----------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCC----EEEEEcCCCEEEEEECCCCCEEEEeec-cc----------
Confidence 688999999999999999774322111 222222 577778999999999999986543222 11
Q ss_pred CCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccC---ccceEEEEEeeCCCEEEEeeCCCeEE
Q 008844 165 NKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG---AAVIKNIVFSRNGQYLLTNSNDRTIR 241 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~---~~~i~~l~~s~~g~~l~t~s~Dg~i~ 241 (551)
.+... ....+..+++++.++.|+.+|..+++.+....... ......+.....+..++++..++.|.
T Consensus 67 ----------~~~~~-~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 67 ----------PISGA-PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLV 135 (238)
T ss_dssp ----------CGGSG-EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEE
T ss_pred ----------cccce-eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEE
Confidence 11111 12345677888888999999999999988742121 11223334444577888888899999
Q ss_pred EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccc-ce----eee-eeeEEcCCCCEEEEeeccCC
Q 008844 242 IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSI-TK----MHW-KAPCFSGDGEWVIAGSASKG 315 (551)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~----~~~-~~~~~s~dg~~l~~gs~~~~ 315 (551)
.+|... +..+-......... .. ..+ ..+.+. ++ .++.+..
T Consensus 136 ~~d~~t-----------------------------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~--- 181 (238)
T PF13360_consen 136 ALDPKT-----------------------------GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSG--- 181 (238)
T ss_dssp EEETTT-----------------------------TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECC---
T ss_pred EEecCC-----------------------------CcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcC---
Confidence 999221 22222221111000 00 000 122222 44 6666665
Q ss_pred cceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 316 EHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 316 dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
++.+.-+|+. ++.+-... ...+..+ ..+.+..|+.++.++.|.+||+.+++
T Consensus 182 ~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 182 DGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 5644444988 77553222 2223321 34677788877799999999999876
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=7.7e-07 Score=77.98 Aligned_cols=68 Identities=22% Similarity=0.474 Sum_probs=57.9
Q ss_pred eeEEcCC-CCEEEEeeccCCcceEEEEecC--CceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCC
Q 008844 297 APCFSGD-GEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 297 ~~~~s~d-g~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~ 367 (551)
++|-.|. .+.+++|+. +|.+-+||.+ ..++..+..|+.+|..+-|||..+ .|++++.||.+.-||-.+
T Consensus 184 ~l~~hp~qq~~v~cgt~---dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTD---DGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhCCcccccEEEEecC---CCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 6677774 456677777 8999999999 567778889999999999999776 899999999999999875
No 314
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.54 E-value=0.00015 Score=67.95 Aligned_cols=270 Identities=13% Similarity=0.127 Sum_probs=143.0
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC----------CCeEEEEeccCCceeeEeecccc-cc---
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS----------DGSCVIWDFETRGIAKELRDKEC-VA--- 68 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~----------dg~I~iwd~~~~~~~~~~~~~~h-~~--- 68 (551)
+.|+|..++++.-.+. .+-.-.+.++|+|+.++++.. .-.|.+||..|......+..... ..
T Consensus 19 v~viD~d~~k~lGmi~----~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 19 VYVIDADSGKLLGMID----TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEETTTTEEEEEEE----EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred EEEEECCCCcEEEEee----cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4456666665443332 233445678999998887532 33599999999887776654311 11
Q ss_pred -cEEEEEecCCCCEEEEEeC--CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 69 -AITSVCWSKYGHRILVSAA--DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 69 -~V~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
....++++.+|++++.... -..|.|-|+..++.+..+..+.. ....|.+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~------------------------- 146 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC---WLIYPSG------------------------- 146 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE---EEEEEEE-------------------------
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE---EEEEecC-------------------------
Confidence 1234567888888777643 45688888888888777765432 1112211
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECC-CCcEEEe----eeccCccceE
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK-SNQIRAL----VPVSGAAVIK 220 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~-~~~~~~~----~~~~~~~~i~ 220 (551)
..-|.+-|.||.+.-+.+. .|+.... +.......+.
T Consensus 147 ---------------------------------------~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~ 187 (342)
T PF06433_consen 147 ---------------------------------------NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFE 187 (342)
T ss_dssp ---------------------------------------TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S
T ss_pred ---------------------------------------CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccc
Confidence 1224444445554444444 2222111 1101111222
Q ss_pred EEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc-----cccceeee
Q 008844 221 NIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ-----DSITKMHW 295 (551)
Q Consensus 221 ~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~ 295 (551)
.-++...+..++-.+..|.|+-.|+.... ......+.... ..=....|
T Consensus 188 ~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~---------------------------~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEGNVYSADLSGDS---------------------------AKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp --EEETTTTEEEEEBTTSEEEEEEETTSS---------------------------EEEEEEEESS-HHHHHTTEEE-SS
T ss_pred ccceECCCCeEEEEecCCEEEEEeccCCc---------------------------ccccCcccccCccccccCcCCcce
Confidence 33444455555556788888877721110 00011111000 00011223
Q ss_pred eeeEEcCCCCEEEEeeccC-------CcceEEEEecC-CceeEEEecCCCceEEEEEecCCC-eEEEE-cCCCcEEEEec
Q 008844 296 KAPCFSGDGEWVIAGSASK-------GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHP-IIVSV-SLTGWVYIWAK 365 (551)
Q Consensus 296 ~~~~~s~dg~~l~~gs~~~-------~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~-s~dg~i~iW~~ 365 (551)
.-+++++..+.|++.-..+ +...|.++|+. ++.+..+.. ..++.+|+.+.+.+ +|++. ..++.|.|||.
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 3567776555554432211 22457788888 888888874 34688999998776 66655 45899999999
Q ss_pred CCCCcc
Q 008844 366 DYTENW 371 (551)
Q Consensus 366 ~~~~~~ 371 (551)
.+++..
T Consensus 320 ~tGk~~ 325 (342)
T PF06433_consen 320 ATGKLV 325 (342)
T ss_dssp TT--EE
T ss_pred cCCcEE
Confidence 987643
No 315
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.54 E-value=4.9e-05 Score=79.83 Aligned_cols=149 Identities=15% Similarity=0.229 Sum_probs=104.2
Q ss_pred CEEEEE-eCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCC----CCcEEEEeeCCCCcEEEEcCCCceeeeccccCC
Q 008844 80 HRILVS-AADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSS----TPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 80 ~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
++|+.. .....|.-.|+..|+.+..+..+..+....+.|... .+...+.|-.+..+..||.+-..........
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~-- 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS-- 571 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc--
Confidence 343433 346788999999999999999988766666777532 3446788899999999999864422111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~ 234 (551)
.........+|++-+.+| +||+|+.+|.|++||--..+....++ +-+.+|.+|..+.||++|++.
T Consensus 572 -------------k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 572 -------------KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALP-GLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred -------------cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCC-CCCCCeeEEEecCCCcEEEEe
Confidence 011122267788888777 69999999999999954433344443 557999999999999998876
Q ss_pred eCCCeEEEEeCc
Q 008844 235 SNDRTIRIYDNL 246 (551)
Q Consensus 235 s~Dg~i~iwd~~ 246 (551)
+ +..|.|+++.
T Consensus 637 c-~tyLlLi~t~ 647 (794)
T PF08553_consen 637 C-KTYLLLIDTL 647 (794)
T ss_pred e-cceEEEEEEe
Confidence 4 5677777743
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=2.4e-05 Score=82.95 Aligned_cols=235 Identities=17% Similarity=0.156 Sum_probs=128.5
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 146 (551)
...|.++.|.-+..-|+.+...|.|.+-|..+......-.....+..++|+|+.. .++.....+++.+-+ ..-...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee---~l~liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEE---LLALITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCc---EEEEEeCCcEEEEEe-ccccch
Confidence 3689999999988888888889999998887766555445555666666776653 233333333322211 110000
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec---------cCcc
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV---------SGAA 217 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~---------~~~~ 217 (551)
.. . +. ...-.+.++.+-+|-.... .-+.-..++....-.. .-..
T Consensus 144 ~E---------------~----------~L-~~d~~~~sk~v~VGwGrke-Tqfrgs~gr~~~~~~~~~ek~~~~~~~~~ 196 (1265)
T KOG1920|consen 144 AE---------------K----------PL-DADDERKSKFVNVGWGRKE-TQFRGSEGRQAARQKIEKEKALEQIEQDD 196 (1265)
T ss_pred hc---------------c----------cc-ccccccccccceecccccc-eeeecchhhhcccccccccccccchhhcc
Confidence 00 0 00 1111122222222211100 0011001100000000 0112
Q ss_pred ceEEEEEeeCCCEEEEee----CC-CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccc
Q 008844 218 VIKNIVFSRNGQYLLTNS----ND-RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSIT 291 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s----~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 291 (551)
.=+.|.|--||+++++.. .+ +.|+|||.- . .+..... ....-.
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g------------------------------~Lns~se~~~~l~~ 245 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G------------------------------ALNSTSEPVEGLQH 245 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c------------------------------hhhcccCccccccc
Confidence 224589999999999842 23 899999911 0 0100000 011111
Q ss_pred eeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCce----eEEEecCCCceEEEEEecCCCeEEE---EcCCCcEEEEe
Q 008844 292 KMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYL----VKILEGPKEALIDLAWHPVHPIIVS---VSLTGWVYIWA 364 (551)
Q Consensus 292 ~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~----~~~l~~h~~~v~~l~~sp~~~~l~s---~s~dg~i~iW~ 364 (551)
+++|-|.|.++++-.....++.|.+|..+|-. ...+......|..++|+.++.+||. +.....|++|-
T Consensus 246 -----~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 246 -----SLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred -----ceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 78999999999987665557789999988433 3333333445999999999999988 44455699999
Q ss_pred cCCC
Q 008844 365 KDYT 368 (551)
Q Consensus 365 ~~~~ 368 (551)
+.+-
T Consensus 321 ~~Ny 324 (1265)
T KOG1920|consen 321 TGNY 324 (1265)
T ss_pred ecCe
Confidence 8763
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.53 E-value=1.8e-06 Score=88.25 Aligned_cols=179 Identities=15% Similarity=0.159 Sum_probs=121.3
Q ss_pred CcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEEC
Q 008844 123 PSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDH 202 (551)
Q Consensus 123 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~ 202 (551)
+..++.++....+..+|+++.+.....-... ..+ ..+-.+++++.+|...|+|.+-|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--------------------~~v--~imR~Nnr~lf~G~t~G~V~LrD~ 204 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--------------------SGV--TIMRYNNRNLFCGDTRGTVFLRDP 204 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccC--------------------Cce--EEEEecCcEEEeecccceEEeecC
Confidence 3468888888889999998887654321110 023 334456789999999999999999
Q ss_pred CCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC---------CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeee
Q 008844 203 KSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN---------DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273 (551)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (551)
++.+.+.++. .|.+.|..+.. .|+.|++++. |..|+|||+++-
T Consensus 205 ~s~~~iht~~-aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm------------------------- 256 (1118)
T KOG1275|consen 205 NSFETIHTFD-AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM------------------------- 256 (1118)
T ss_pred CcCceeeeee-ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh-------------------------
Confidence 9999999997 89998876554 6889998874 556788883221
Q ss_pred eccceeeeeecccccccceeeeeeeEEcCC-CCEEEEeeccCCcceEEEEecC--Cce-eEEEe--cCCCceEEEEEecC
Q 008844 274 MVGSKCLALFREFQDSITKMHWKAPCFSGD-GEWVIAGSASKGEHKIYIWDRA--GYL-VKILE--GPKEALIDLAWHPV 347 (551)
Q Consensus 274 ~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d-g~~l~~gs~~~~dg~I~iwd~~--~~~-~~~l~--~h~~~v~~l~~sp~ 347 (551)
+.+..+.-+.++- -+.|.|. -..+++.+. .|...+-|.. +.+ ...+. .....+..+.++++
T Consensus 257 ----ral~PI~~~~~P~------flrf~Psl~t~~~V~S~---sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn 323 (1118)
T KOG1275|consen 257 ----RALSPIQFPYGPQ------FLRFHPSLTTRLAVTSQ---SGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSN 323 (1118)
T ss_pred ----hccCCcccccCch------hhhhcccccceEEEEec---ccceeeccccccCCCccceeEEccCCCcceeEEecCC
Confidence 1111111111111 2455553 234555555 6889998854 322 33332 22345999999999
Q ss_pred CCeEEEEcCCCcEEEEe
Q 008844 348 HPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 348 ~~~l~s~s~dg~i~iW~ 364 (551)
+..||.+..+|.|.+|.
T Consensus 324 ~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 324 GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CceEEEecccCcEeeec
Confidence 99999999999999999
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=0.00028 Score=62.41 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=72.9
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEE-EEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCee
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAIT-SVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPL 112 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~-~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 112 (551)
-|++++.|+..|.+++.+..+|.....+... ..|. .....+++.++..++.|++....|..+..++...+....+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCcee
Confidence 3678999999999999999999877777653 2222 23345678899999999999999999999988877665433
Q ss_pred -EEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 113 -QARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 113 -~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
+-.+.|.. ..+.++...|.+.-......
T Consensus 139 ~sP~i~~g~---~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 139 VSPVIAPGD---GSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ccceecCCC---ceEEEEeccceEEEEccCCC
Confidence 33444422 23555555565555555444
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=3.6e-07 Score=57.54 Aligned_cols=38 Identities=24% Similarity=0.602 Sum_probs=34.6
Q ss_pred ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 56 GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 56 ~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
+++.++.+| ...|++|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h--~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGH--SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESS--SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCC--CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 567778766 99999999999999999999999999997
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=4.2e-07 Score=82.71 Aligned_cols=126 Identities=13% Similarity=0.185 Sum_probs=96.4
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC-----ceeeEeecccccccEEEEEecC-CCCEEEEEeCCCCEEEEEc
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-----GIAKELRDKECVAAITSVCWSK-YGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~-----~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~ 96 (551)
.+.|.++.|.-.++++..|+.+|.|..+|+..+ .+.+.+ -|...|+++.... ++.+|++.+.+|+|++||+
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl---yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL---YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE---EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 467888999988999999999999999999865 233333 2488999998877 7889999999999999999
Q ss_pred CCCeE---EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEK---ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 97 ~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
+--++ +..+.+|-...
T Consensus 329 R~~K~~~~V~qYeGHvN~~------------------------------------------------------------- 347 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGHVNLS------------------------------------------------------------- 347 (425)
T ss_pred hhhhcccceeeeecccccc-------------------------------------------------------------
Confidence 86665 66666654210
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV 213 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 213 (551)
...-+-..+....|++++.|...+||.+..+.++.+++.
T Consensus 348 -a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 348 -AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred -cccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 111122344556788899999999999999999888853
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.45 E-value=0.00018 Score=70.81 Aligned_cols=286 Identities=19% Similarity=0.232 Sum_probs=147.8
Q ss_pred cCCCCEEEEEe---------CCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 32 NRRGTLLAAGC---------SDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 32 s~dg~~latg~---------~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|+.|+... ++.|.++++.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 68888877642 246799999998765544432 46788999999999999886 678999998777544
Q ss_pred EEEEcC------------------CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC---CCceeeeccccCCCCCCCCC
Q 008844 103 TRIVLQ------------------QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLS---TGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 103 ~~~~~~------------------~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~ 161 (551)
+..... .....+-|+|+++. +++....+..+..+.+. .... ..+
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~~~~-~yp------------ 141 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSPPDS-QYP------------ 141 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESSSTE-SS-------------
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCCccc-cCC------------
Confidence 332211 11245668887652 33344444444433321 1110 000
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEE-eee---ccCccceEEEEEeeCCCEEEEe--e
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRA-LVP---VSGAAVIKNIVFSRNGQYLLTN--S 235 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~-~~~---~~~~~~i~~l~~s~~g~~l~t~--s 235 (551)
.+..+.+-.-|.-.. .-.+.|+|+.+++... ... ......+..+.|.+++..|+.. .
T Consensus 142 -------------~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 142 -------------EVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp -------------EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred -------------cccccccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 222333322222111 1257788998887632 221 1346778999999999844443 3
Q ss_pred CCCe---EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceee-eeecccccccceeeeeeeEEc-CCCCEEEEe
Q 008844 236 NDRT---IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCL-ALFREFQDSITKMHWKAPCFS-GDGEWVIAG 310 (551)
Q Consensus 236 ~Dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~s-~dg~~l~~g 310 (551)
.+.. +.++|. ..+.+. .........+.. ...+.|. +++..++..
T Consensus 205 R~q~~~~l~~~d~-----------------------------~tg~~~~~~~e~~~~Wv~~--~~~~~~~~~~~~~~l~~ 253 (353)
T PF00930_consen 205 RDQNRLDLVLCDA-----------------------------STGETRVVLEETSDGWVDV--YDPPHFLGPDGNEFLWI 253 (353)
T ss_dssp TTSTEEEEEEEEE-----------------------------CTTTCEEEEEEESSSSSSS--SSEEEE-TTTSSEEEEE
T ss_pred cCCCEEEEEEEEC-----------------------------CCCceeEEEEecCCcceee--ecccccccCCCCEEEEE
Confidence 3322 334441 111111 111112222211 1144554 666666655
Q ss_pred eccCCcceEEEEecCCceeEEEecCCCceEE-EEEecCCCeEE-EEcCC--C--cEEEEecC-CCC----------c-ce
Q 008844 311 SASKGEHKIYIWDRAGYLVKILEGPKEALID-LAWHPVHPIIV-SVSLT--G--WVYIWAKD-YTE----------N-WS 372 (551)
Q Consensus 311 s~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~-l~~sp~~~~l~-s~s~d--g--~i~iW~~~-~~~----------~-~~ 372 (551)
+...|-..|++++..+.....+....-.|.. +.|.+++..|+ ++..+ + .|+.-++. .++ . ..
T Consensus 254 s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~ 333 (353)
T PF00930_consen 254 SERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSA 333 (353)
T ss_dssp EETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEE
T ss_pred EEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEE
Confidence 5544456677777775556666655566754 67888877544 44432 2 34444444 221 2 34
Q ss_pred eecCCcceecee
Q 008844 373 AFAPDFKELEEN 384 (551)
Q Consensus 373 ~~spd~~~l~~~ 384 (551)
.|+|+|+.+...
T Consensus 334 ~~Spdg~y~v~~ 345 (353)
T PF00930_consen 334 SFSPDGKYYVDT 345 (353)
T ss_dssp EE-TTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 788888776643
No 322
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.44 E-value=0.00071 Score=64.83 Aligned_cols=298 Identities=15% Similarity=0.104 Sum_probs=130.6
Q ss_pred cccCCCCccceeecccccceEEE-----EEEcCCCCEEEEEeC-C--CeEEEEeccCCceeeEeecccccccEEEEEecC
Q 008844 6 IDPLQGDFPEVIEEYLEHGVMKC-----IAFNRRGTLLAAGCS-D--GSCVIWDFETRGIAKELRDKECVAAITSVCWSK 77 (551)
Q Consensus 6 wd~~~~~~~~~l~~~~h~~~V~~-----l~fs~dg~~latg~~-d--g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~ 77 (551)
.|+.||-....|.. ..+.... =+|.++|+.|+.++. + ..+.+.|+.+++..+.-.+. ........++|
T Consensus 15 ~D~~TG~~VtrLT~--~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~ 90 (386)
T PF14583_consen 15 IDPDTGHRVTRLTP--PDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP--GDNTFGGFLSP 90 (386)
T ss_dssp E-TTT--EEEE-S---TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-T
T ss_pred eCCCCCceEEEecC--CCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC--CCCccceEEec
Confidence 36777754444433 2221121 257788976665544 4 45777788888776655443 22233566788
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCee-EEEEecCCCCCcEEEEee----------------------CCCC
Q 008844 78 YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPL-QARLHPGSSTPSLCLACP----------------------LSSA 134 (551)
Q Consensus 78 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~----------------------~~~~ 134 (551)
+.+.|+-......|+-.|+.+.+....+..+..-. ...+..+.... .++... ....
T Consensus 91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 88888776666789999999988777777666543 34554433222 222111 1123
Q ss_pred cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-------ceEEEEECCCCcE
Q 008844 135 PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-------GEILVIDHKSNQI 207 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-------g~i~i~d~~~~~~ 207 (551)
|...|+.+++...+.... .-+..+.|+|....+++=+.. ..|-+.+......
T Consensus 170 i~~idl~tG~~~~v~~~~---------------------~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFEDT---------------------DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp EEEEETTT--EEEEEEES---------------------S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred EEEEECCCCceeEEEecC---------------------ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 445566666654433221 156678888877555444332 2454445444444
Q ss_pred EEeeeccCccceEEEEEeeCCCEEEEeeC-----CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee
Q 008844 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSN-----DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL 282 (551)
Q Consensus 208 ~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (551)
....+......+..=-|.|+|..|.--+. +..|.-+++.. ... ..
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t-----------------------------~~~-~~ 278 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT-----------------------------GER-RR 278 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-------------------------------E-EE
T ss_pred eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC-----------------------------CCc-eE
Confidence 33332223445666678899886654322 33344444110 100 11
Q ss_pred ecccccccceeeeeeeEEcCCCCEEEEeeccC-------------CcceEEEEecC-CceeEEEecCCC-----------
Q 008844 283 FREFQDSITKMHWKAPCFSGDGEWVIAGSASK-------------GEHKIYIWDRA-GYLVKILEGPKE----------- 337 (551)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~-------------~dg~I~iwd~~-~~~~~~l~~h~~----------- 337 (551)
+.... . ......++||++++.=+.+. .+-.|+++++. +.... +.-|..
T Consensus 279 ~~~~p-~-----~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 279 LMEMP-W-----CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQV 351 (386)
T ss_dssp EEEE--S-----EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSST
T ss_pred EEeCC-c-----eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCcc
Confidence 11111 1 11455678998876544310 01256778877 44322 222221
Q ss_pred ceEEEEEecCCCeEEEEc-CCCcEEEEecC
Q 008844 338 ALIDLAWHPVHPIIVSVS-LTGWVYIWAKD 366 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s-~dg~i~iW~~~ 366 (551)
.=-...|+||+++|+-.| ..|...||-++
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 124578999999665554 47777776554
No 323
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.44 E-value=2e-06 Score=77.21 Aligned_cols=245 Identities=15% Similarity=0.149 Sum_probs=132.4
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe-E----EEEEEcCC-------------CeeEEEEecCCCCCcEEEE
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-K----ITRIVLQQ-------------TPLQARLHPGSSTPSLCLA 128 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~----~~~~~~~~-------------~~~~~~~~p~~~~~~~~~~ 128 (551)
...|+++.|...|.||++|...|.|.++.-.... + ...++.+. .+..+.|..++. ...++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~-r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG-RNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC-cceEEE
Confidence 5679999999999999999999999999744322 1 11222222 234455554432 335666
Q ss_pred eeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCC----
Q 008844 129 CPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKS---- 204 (551)
Q Consensus 129 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~---- 204 (551)
...+.++.+|.+.......+. . . ..+.-.-+|.+.-+.+. ..+.+=.+..
T Consensus 105 stNdktiKlWKiyeknlk~va-----------------~--n----nls~~~~~~~~g~~~s~---~~l~lprls~hd~i 158 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVA-----------------E--N----NLSDSFHSPMGGPLTST---KELLLPRLSEHDEI 158 (460)
T ss_pred ecCCceeeeeeeecccchhhh-----------------c--c----ccccccccccCCCcCCH---HHhhcccccccceE
Confidence 677777888877665443210 0 0 00000011111101000 0010000000
Q ss_pred --CcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee
Q 008844 205 --NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL 282 (551)
Q Consensus 205 --~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (551)
..+.+.+...|..-|.++.|+.+...++++ .|=.|.+|++..+... +.....+ ...
T Consensus 159 iaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~s--------------------FnIVDiK-P~n 216 (460)
T COG5170 159 IAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGS--------------------FNIVDIK-PHN 216 (460)
T ss_pred EEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCc--------------------eEEEecc-Ccc
Confidence 001112223677889999999988887776 6788999983322100 0000000 011
Q ss_pred ecccccccceeeeeeeEEcCCCC-EEEEeeccCCcceEEEEecC-Ccee----EE------------EecCCCceEEEEE
Q 008844 283 FREFQDSITKMHWKAPCFSGDGE-WVIAGSASKGEHKIYIWDRA-GYLV----KI------------LEGPKEALIDLAW 344 (551)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~s~dg~-~l~~gs~~~~dg~I~iwd~~-~~~~----~~------------l~~h~~~v~~l~~ 344 (551)
+......|+ +..|+|... .+...+. .|.|++-|++ ..+. .. +.+-...|..+.|
T Consensus 217 meeLteVIt-----SaeFhp~~cn~fmYSsS---kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kF 288 (460)
T COG5170 217 MEELTEVIT-----SAEFHPEMCNVFMYSSS---KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKF 288 (460)
T ss_pred HHHHHHHHh-----hcccCHhHcceEEEecC---CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEE
Confidence 112223344 678888433 3333343 6899999987 2111 11 1112246889999
Q ss_pred ecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 345 HPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 345 sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
++.|++|++-+. -+|+|||+...+
T Consensus 289 s~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 289 SDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred cCCCcEEEEecc-ceEEEEeccccc
Confidence 999999998874 589999998654
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.43 E-value=0.00022 Score=70.14 Aligned_cols=284 Identities=15% Similarity=0.180 Sum_probs=150.9
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccc----------------
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKEC---------------- 66 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h---------------- 66 (551)
+.|+|..++........ ...+....|||+|+.||... ++.|.+++..++...+ +...+-
T Consensus 25 y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 25 YYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHT
T ss_pred EEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-eccccceeEEcCccceeccccc
Confidence 45677777644333222 46678889999999999886 6789999987774332 222110
Q ss_pred cccEEEEEecCCCCEEEEEeC-CCCEEEEEc---CCC-e---EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEE
Q 008844 67 VAAITSVCWSKYGHRILVSAA-DKSLTLWDV---LKG-E---KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIV 138 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~-dg~i~vwd~---~~~-~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~ 138 (551)
-..-..+-||||+++|+.... +..|..+.+ ... . .+..++-+. |+..+ ..-.+.++
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk--------~G~~n--------p~v~l~v~ 163 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK--------AGDPN--------PRVSLFVV 163 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B--------TTS-----------EEEEEEE
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC--------CCCcC--------CceEEEEE
Confidence 012356889999999988765 344444432 111 1 122222111 11110 01135567
Q ss_pred EcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-----CceEEEEECCCCcEEEeeec
Q 008844 139 DLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-----KGEILVIDHKSNQIRALVPV 213 (551)
Q Consensus 139 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~ 213 (551)
++.+++...+...... .....-+..+.|.+++..|++.-. .-.+.++|..++........
T Consensus 164 ~~~~~~~~~~~~~~~~---------------~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 164 DLASGKTTELDPPNSL---------------NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp ESSSTCCCEE---HHH---------------HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred ECCCCcEEEeeecccc---------------CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 8877765433222100 001126889999999984444322 23578889988766444432
Q ss_pred cCccce---EEEEEe-eCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc
Q 008844 214 SGAAVI---KNIVFS-RNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD 288 (551)
Q Consensus 214 ~~~~~i---~~l~~s-~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (551)
.....| ..+.|. +++ .+|.....+|.-+||-+. ..+.. ...+....-
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~---------------------------~~~~~-~~~lT~G~~ 280 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD---------------------------LDGGK-PRQLTSGDW 280 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE---------------------------TTSSE-EEESS-SSS
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc---------------------------ccccc-eeccccCce
Confidence 333222 245554 554 455555677876666411 11111 223332233
Q ss_pred ccceeeeeeeEEcCCCCEEEEeecc--CCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEE
Q 008844 289 SITKMHWKAPCFSGDGEWVIAGSAS--KGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSV 354 (551)
Q Consensus 289 ~v~~~~~~~~~~s~dg~~l~~gs~~--~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~ 354 (551)
.|.. -+.++++++.|+..+.. .....|+..++. +..+..|......-..+.|||++++++-.
T Consensus 281 ~V~~----i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 281 EVTS----ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp -EEE----EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred eecc----cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 3321 36788888776644432 124467777777 67777777554444699999999976644
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.41 E-value=5.3e-05 Score=75.97 Aligned_cols=126 Identities=18% Similarity=0.208 Sum_probs=88.6
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
..++..|.--+++..+++|+.|+.-|.+++|+-.++..... ...+..+.+..++.+++..+++.|+..|.|.++-++.+
T Consensus 30 ~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 30 GFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred ccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-cccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 33556666666778899999999999999999876654333 22122566777788888888888888999988877653
Q ss_pred eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 100 EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
..- ....+.|. ...|+..|+|+
T Consensus 109 ~p~---------~~~~~t~~-------------------------------------------------d~~~~~rVTal 130 (726)
T KOG3621|consen 109 LPR---------DLDYVTPC-------------------------------------------------DKSHKCRVTAL 130 (726)
T ss_pred CCC---------cceeeccc-------------------------------------------------cccCCceEEEE
Confidence 211 11111111 11134489999
Q ss_pred EEeeCCCEEEEEecCceEEEEECCC
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKS 204 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~ 204 (551)
+|++++..+++|...|.|....+.+
T Consensus 131 ~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 131 EWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EecccccEEeecCCCceEEEEEech
Confidence 9999999999999999988887776
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=3e-05 Score=78.50 Aligned_cols=198 Identities=14% Similarity=0.139 Sum_probs=115.6
Q ss_pred EcCCCCEEEEE-eCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC
Q 008844 31 FNRRGTLLAAG-CSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ 109 (551)
Q Consensus 31 fs~dg~~latg-~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 109 (551)
++|||+.|... -..+.+.+.|.++.+...++... .....+.++++|+++++.+.+. +.+..+..+....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd---gnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e 269 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD---GNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAE 269 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC---CCcccceECCCCCEEEEeccCc-------ccCcceeeecccc
Confidence 45677655332 23466778888887777776543 3456778889999888887532 2233333332222
Q ss_pred CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEE
Q 008844 110 TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVY 189 (551)
Q Consensus 110 ~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 189 (551)
....+.|.+.. ...+.++|++..
T Consensus 270 ~d~~vvfni~~---------------------------------------------------------iea~vkdGK~~~ 292 (635)
T PRK02888 270 RDWVVVFNIAR---------------------------------------------------------IEEAVKAGKFKT 292 (635)
T ss_pred CceEEEEchHH---------------------------------------------------------HHHhhhCCCEEE
Confidence 21222222210 012345677766
Q ss_pred EEecCceEEEEECCC-----CcEEEeeeccCccceEEEEEeeCCCEEEEeeC-CCeEEEEeCcCCccccchhhhhhhccC
Q 008844 190 VGNSKGEILVIDHKS-----NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-DRTIRIYDNLLPLKNGLEALVDIEKGI 263 (551)
Q Consensus 190 ~g~~dg~i~i~d~~~-----~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (551)
++ ++.|.++|..+ ...+..+ .-......+.++|||+++++++. +.+|.|+|+..-. .. +...
T Consensus 293 V~--gn~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k-~~------~~~~- 360 (635)
T PRK02888 293 IG--GSKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD-DL------FDGK- 360 (635)
T ss_pred EC--CCEEEEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh-hh------hhcc-
Confidence 63 57899999998 4556666 44566788999999999877655 8999999932110 00 0000
Q ss_pred CCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 264 AEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
+... ........--.++. ..+|.++|+...+-.- |..|..|++.
T Consensus 361 --------~~~~-~~vvaevevGlGPL------HTaFDg~G~aytslf~---dsqv~kwn~~ 404 (635)
T PRK02888 361 --------IKPR-DAVVAEPELGLGPL------HTAFDGRGNAYTTLFL---DSQIVKWNIE 404 (635)
T ss_pred --------CCcc-ceEEEeeccCCCcc------eEEECCCCCEEEeEee---cceeEEEehH
Confidence 0000 00011111111122 6799999987777777 8899999986
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=5e-06 Score=84.33 Aligned_cols=291 Identities=14% Similarity=0.101 Sum_probs=151.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 104 (551)
.+++++|+|..-.||.|-.-|.+.+|...+.+....... |..+|..+.||++|..|+++..-|.|.+|....-..+..
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t--h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~ 138 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET--HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT 138 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC--CCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence 357799999988999998899999999887665444443 599999999999999999999999999998753222211
Q ss_pred E-----EcCCC--eeEEEEecCCCCCc---EEEEeeCCCCcE-EEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 105 I-----VLQQT--PLQARLHPGSSTPS---LCLACPLSSAPM-IVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 105 ~-----~~~~~--~~~~~~~p~~~~~~---~~~~~~~~~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
. ..... ..+.++.+++.... ...+.+.+..+- .++.+.... .
T Consensus 139 ~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a-----------------~---------- 191 (1416)
T KOG3617|consen 139 SNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLA-----------------E---------- 191 (1416)
T ss_pred chhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchh-----------------h----------
Confidence 1 11111 22333333321111 111111111111 111110000 0
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccc
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
.-..-.-.|+|..++.++.+|+|+..|-.. +...... ..+. ..+-|.+-..-|++...+-.+.++-+ +..+..
T Consensus 192 -rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g-~~~~V~k--~dS~-vQmLf~~~~eai~~i~e~lr~~l~~v--~~~G~~ 264 (1416)
T KOG3617|consen 192 -RSDEKSGVPKGTEFLFAGKSGTVYYVDQNG-RQRTVHK--LDSE-VQMLFMGYCEAISIIIEFLRDCLIFV--LAKGTS 264 (1416)
T ss_pred -ccccccCCCCCcEEEEEcCCceEEEEcCCC-cEEEEEE--ccch-HHHHHhcccceEEEEeeeceeeEEEe--cCCCch
Confidence 000001246788899999999999888543 3333332 1111 22344443333444444444444431 111221
Q ss_pred hhhh--hhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-----C
Q 008844 254 EALV--DIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-----G 326 (551)
Q Consensus 254 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-----~ 326 (551)
+.+. .+.+......+.-......+ .++.-..+ +....-.++++|++..+..|+.|.. .|.+++|--. |
T Consensus 265 ee~~~vk~sgk~GgrqGgiA~sEssG-vLr~~eKy-g~e~ge~~~c~cY~~~~~~l~agt~---~gnv~~w~~v~~~f~g 339 (1416)
T KOG3617|consen 265 EERCAVKVSGKLGGRQGGIACSESSG-VLRKSEKY-GLELGEGILCMCYGEKEIRLWAGTK---EGNVTIWLDVNKGFQG 339 (1416)
T ss_pred HHhhhhhhccccCCccCccccccccc-cccCCcch-hhhcCCceEEEEEeccceEEEeccc---CCcEEEeeecCccccC
Confidence 1111 11111000000000000000 01111110 1111223459999999999999998 8999999644 2
Q ss_pred ce---eEEEecC---CCceEEEEEecCCCeEEEEcC
Q 008844 327 YL---VKILEGP---KEALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 327 ~~---~~~l~~h---~~~v~~l~~sp~~~~l~s~s~ 356 (551)
.+ +-.+.+. .+.|+.+.|.|-.+.++.-+.
T Consensus 340 ~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 340 DPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred CCCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence 22 3344443 367999999997665554443
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.35 E-value=4.2e-05 Score=76.07 Aligned_cols=238 Identities=16% Similarity=0.229 Sum_probs=140.1
Q ss_pred eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC---C-CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCC
Q 008844 46 SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA---D-KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSS 121 (551)
Q Consensus 46 ~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~ 121 (551)
.+.+=|.+ +.....+... ...+..-.|+|++..++.... . ..+.++++.++................|+|++.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~--~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDS--GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEeccc--CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCC
Confidence 34444544 4445555433 567888899999987665532 2 459999999998877777777777889999985
Q ss_pred CCcEEEEeeCCCC--cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-c--e
Q 008844 122 TPSLCLACPLSSA--PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-G--E 196 (551)
Q Consensus 122 ~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-g--~ 196 (551)
. ++++...++. |+++|+..+....+. .... .-+.-.|+|+|+.|+..+.. | .
T Consensus 251 ~--l~f~~~rdg~~~iy~~dl~~~~~~~Lt--~~~g-------------------i~~~Ps~spdG~~ivf~Sdr~G~p~ 307 (425)
T COG0823 251 K--LAFSSSRDGSPDIYLMDLDGKNLPRLT--NGFG-------------------INTSPSWSPDGSKIVFTSDRGGRPQ 307 (425)
T ss_pred E--EEEEECCCCCccEEEEcCCCCcceecc--cCCc-------------------cccCccCCCCCCEEEEEeCCCCCcc
Confidence 3 6666666665 556677776643311 1100 12255799999888877653 3 5
Q ss_pred EEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC-Ce--EEEEeCcCCccccchhhhhhhccCCCCCcceeee
Q 008844 197 ILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND-RT--IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273 (551)
Q Consensus 197 i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (551)
|.++++.......... ....-..-.|+|+|++|+..+.. |. |.+.++.
T Consensus 308 I~~~~~~g~~~~riT~--~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~--------------------------- 358 (425)
T COG0823 308 IYLYDLEGSQVTRLTF--SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA--------------------------- 358 (425)
T ss_pred eEEECCCCCceeEeec--cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC---------------------------
Confidence 7788888777644332 22222278899999998877653 44 3333310
Q ss_pred eccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEec
Q 008844 274 MVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHP 346 (551)
Q Consensus 274 ~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp 346 (551)
.....+.+.. ..... ..+|.++|+.|...+...+...+..-...++....+....+.+...+|+|
T Consensus 359 --~~~~~~~lt~-~~~~e-----~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 359 --SGGKIRILTS-TYLNE-----SPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred --CCCcEEEccc-cccCC-----CCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEeccCcceecccccC
Confidence 0110111111 11111 55788999988877663323333333333555544544444555555544
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00067 Score=69.81 Aligned_cols=208 Identities=13% Similarity=0.136 Sum_probs=115.6
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccc----cccEE--EEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKEC----VAAIT--SVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h----~~~V~--~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 108 (551)
+..|++++.++.|.-.|..+|+.+..+..... ...+. .+... ++..++.++.++.|..+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566777889999999999988877654311 00110 11111 2257888888999999999999999888765
Q ss_pred CCe---eEEEEecCCCCCcEEEEee---------CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCC-CCCCCCCCCC
Q 008844 109 QTP---LQARLHPGSSTPSLCLACP---------LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRN-KYSDGTPPFT 175 (551)
Q Consensus 109 ~~~---~~~~~~p~~~~~~~~~~~~---------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 175 (551)
... ..+.-.|.-... +++.++ .++.+..+|..+++..................... ..........
T Consensus 140 ~~~~~~~~i~ssP~v~~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CCcCcceEecCCCEEECC-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 431 111111211111 333433 35778899999988655432211110000000000 0000000001
Q ss_pred ceEEEEeeCCCEEEEEecCc------------------eEEEEECCCCcEEEeeeccCcc-----ceEEEEEe----eCC
Q 008844 176 PTAACFNKYGDLVYVGNSKG------------------EILVIDHKSNQIRALVPVSGAA-----VIKNIVFS----RNG 228 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg------------------~i~i~d~~~~~~~~~~~~~~~~-----~i~~l~~s----~~g 228 (551)
-...++.+.+..+++++.++ .|.-+|..+++.+..+...+.. ......+. -+|
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g 298 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDG 298 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCC
Confidence 12356666677888887665 7999999999998876533211 00011111 133
Q ss_pred C---EEEEeeCCCeEEEEe
Q 008844 229 Q---YLLTNSNDRTIRIYD 244 (551)
Q Consensus 229 ~---~l~t~s~Dg~i~iwd 244 (551)
. .+++++.+|.+..+|
T Consensus 299 ~~~~~V~~g~~~G~l~ald 317 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLD 317 (488)
T ss_pred CeeEEEEEECCCceEEEEE
Confidence 3 577788899988888
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.00011 Score=73.23 Aligned_cols=162 Identities=20% Similarity=0.167 Sum_probs=100.7
Q ss_pred CceEEEEeeCCCEEEEEe---cC-ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEeCcCCc
Q 008844 175 TPTAACFNKYGDLVYVGN---SK-GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYDNLLPL 249 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~---~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd~~~~~ 249 (551)
.+..-+|+|++..++.-. .. ..++++++.+++..... ...+.-...+|+|+|+.|+.+ ..||...||-..
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d--- 268 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD--- 268 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--ccCCccCCccCCCCCCEEEEEECCCCCccEEEEc---
Confidence 445566778876554432 22 46999999998876555 233444557899999987655 457776655310
Q ss_pred cccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCcee
Q 008844 250 KNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLV 329 (551)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~ 329 (551)
..+.. +..+....+.-. ...|+|||++|+..+...|--.|+++++.+..+
T Consensus 269 ------------------------l~~~~-~~~Lt~~~gi~~-----~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 269 ------------------------LDGKN-LPRLTNGFGINT-----SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred ------------------------CCCCc-ceecccCCcccc-----CccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 11111 111222222222 568999999999998866556677777775544
Q ss_pred EEEecCCCceEEEEEecCCCeEEEEcC-CCc--EEEEecCCCCcc
Q 008844 330 KILEGPKEALIDLAWHPVHPIIVSVSL-TGW--VYIWAKDYTENW 371 (551)
Q Consensus 330 ~~l~~h~~~v~~l~~sp~~~~l~s~s~-dg~--i~iW~~~~~~~~ 371 (551)
..+......-..-.|+|+|.+|+..+. +|. |.+.++.++..|
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~ 363 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKI 363 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcE
Confidence 555444433347889999999888875 344 666666555433
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.28 E-value=0.00048 Score=68.82 Aligned_cols=231 Identities=18% Similarity=0.283 Sum_probs=115.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 104 (551)
....+.++|+|+++++ +.+|...|+.....+... .+.-....|.+.++ +++-....+|.|+.--+......
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-------cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE
Confidence 4678899999998888 457888888743333221 23345677888554 55555577888863212111112
Q ss_pred EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC
Q 008844 105 IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184 (551)
Q Consensus 105 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 184 (551)
+..+. .+..+..
T Consensus 105 i~~~~-----------------------------------------------------------------~~~~If~--- 116 (443)
T PF04053_consen 105 IKLPF-----------------------------------------------------------------SVEKIFG--- 116 (443)
T ss_dssp ---SS------------------------------------------------------------------EEEEE----
T ss_pred EcCCc-----------------------------------------------------------------ccceEEc---
Confidence 22111 1122221
Q ss_pred CCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCC
Q 008844 185 GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIA 264 (551)
Q Consensus 185 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (551)
|.+|++.+.+ .|.+||+.+++.+..+. .. +|..+.|+++|.+++..+.+ .+.|++.... .... .
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~~------~~~~-----~ 180 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRID--VS-AVKYVIWSDDGELVALVTKD-SIYILKYNLE------AVAA-----I 180 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH------HHHH-----B
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEe--cC-CCcEEEEECCCCEEEEEeCC-eEEEEEecch------hccc-----c
Confidence 6666666544 89999999999999884 33 38999999999999988755 6777761100 0000 0
Q ss_pred CCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEE
Q 008844 265 EPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAW 344 (551)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~ 344 (551)
...+. ...+..+......|. +.+|..+ .++..+. . .|+. +-+....++..-..++.=+..
T Consensus 181 ~~~g~-------e~~f~~~~E~~~~Ik-----Sg~W~~d--~fiYtT~---~-~lkY--l~~Ge~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 181 PEEGV-------EDAFELIHEISERIK-----SGCWVED--CFIYTTS---N-HLKY--LVNGETGIIAHLDKPLYLLGY 240 (443)
T ss_dssp TTTB--------GGGEEEEEEE-S--S-----EEEEETT--EEEEE-T---T-EEEE--EETTEEEEEEE-SS--EEEEE
T ss_pred cccCc-------hhceEEEEEecceeE-----EEEEEcC--EEEEEcC---C-eEEE--EEcCCcceEEEcCCceEEEEE
Confidence 00000 012333333344454 6677665 4544554 3 5555 332233334333456777778
Q ss_pred ecCCCeEEEEcCCCcEEEEecCCC
Q 008844 345 HPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 345 sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
.|..+.|+....|+.|..+.++..
T Consensus 241 ~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 241 LPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ETTTTEEEEE-TT--EEEEE--HH
T ss_pred EccCCEEEEEECCCCEEEEEECHH
Confidence 887788888888999988887653
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=6.1e-05 Score=70.46 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=64.2
Q ss_pred ccceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCC-CEEEEEeCCCCEEEEEcCCC
Q 008844 22 EHGVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG-HRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 22 h~~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~ 99 (551)
|...|..++|||..+ +|..++.+..|+|.|+++..++..+..+ ..+++++|.-+. ++|+.|-..|.|.|||++..
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 456799999999877 7888999999999999999988888764 899999998764 56777778999999999754
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=0.00022 Score=70.63 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=59.5
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeC
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDN 245 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~ 245 (551)
.+.|++++|+...++.|+.||.|.+||...+..... ...-..+.++|+|+|..+++|+.-|.+.+||+
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 899999999999999999999999999987744332 33456788999999999999999999999993
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.25 E-value=0.00043 Score=70.32 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=98.7
Q ss_pred EeeCCCEEEEE-ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC----eEEEEeCcCCccccchh
Q 008844 181 FNKYGDLVYVG-NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR----TIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 181 ~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg----~i~iwd~~~~~~~~~~~ 255 (551)
++++|+.+... -..+.+.++|..+.+...++... +....+.++++|+++++++.+. ++...+. .... ...
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a--~e~d-~~v 274 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA--AERD-WVV 274 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeecc--ccCc-eEE
Confidence 56677665443 34678889999998887777533 3557789999999998886322 2322220 0000 000
Q ss_pred hhhhhcc-CCCCCcceeeeeccceeeeeecccc-----c------ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEe
Q 008844 256 LVDIEKG-IAEPNGIEKMKMVGSKCLALFREFQ-----D------SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWD 323 (551)
Q Consensus 256 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd 323 (551)
....... ....++.. ... +...+..+..-. . ++.+.+| .+.+||||+++++++.- +..|.|.|
T Consensus 275 vfni~~iea~vkdGK~-~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPH-GV~vSPDGkylyVankl--S~tVSVID 349 (635)
T PRK02888 275 VFNIARIEEAVKAGKF-KTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPH-GVNTSPDGKYFIANGKL--SPTVTVID 349 (635)
T ss_pred EEchHHHHHhhhCCCE-EEE-CCCEEEEEECCccccCCcceEEEEECCCCcc-ceEECCCCCEEEEeCCC--CCcEEEEE
Confidence 0000000 00000000 000 011111111111 0 1112223 78999999999887763 78999999
Q ss_pred cC-Cc------------eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 324 RA-GY------------LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 324 ~~-~~------------~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+. .+ .+..... .......+|.++|....|...|..|..|++..
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 98 33 2333332 23346678999998888888899999999976
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.22 E-value=0.00099 Score=66.14 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=66.2
Q ss_pred EEEEECCCCcE--EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeee
Q 008844 197 ILVIDHKSNQI--RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKM 274 (551)
Q Consensus 197 i~i~d~~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (551)
-.+|++...+. +.....+....|.+++++|+...|+.|+.||.|.+||....
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-------------------------- 291 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-------------------------- 291 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC--------------------------
Confidence 35666655443 33344477889999999999999999999999999993211
Q ss_pred ccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 275 VGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
+..+....-.. +.++|+|+|.++++|+. .|.|.+||+.
T Consensus 292 -----~t~~~ka~~~P-----~~iaWHp~gai~~V~s~---qGelQ~FD~A 329 (545)
T PF11768_consen 292 -----VTLLAKAEFIP-----TLIAWHPDGAIFVVGSE---QGELQCFDMA 329 (545)
T ss_pred -----eeeeeeecccc-----eEEEEcCCCcEEEEEcC---CceEEEEEee
Confidence 11121111112 27899999999999998 8999999987
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.22 E-value=0.011 Score=61.33 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=118.6
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEE---E-------EEecCCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAIT---S-------VCWSKYGHRILVSAADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~---~-------l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 104 (551)
+..|++++.++.|.-.|..+|+.+-.+..... ..+. + +++. +..++.++.|+.|...|..+|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 45677777788999999999998877653211 1111 1 1222 34677788899999999999999987
Q ss_pred EEcCCCe--eEEEEecCCCCCcEEEEee------CCCCcEEEEcCCCceeeeccccCCCCCCC-------------CCCC
Q 008844 105 IVLQQTP--LQARLHPGSSTPSLCLACP------LSSAPMIVDLSTGSTSILPIAVPDVANGI-------------APSS 163 (551)
Q Consensus 105 ~~~~~~~--~~~~~~p~~~~~~~~~~~~------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~-------------~~~~ 163 (551)
....... ..+.-.|--... .++++. .++.+..+|..+++............... ....
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 7643211 111111210111 334433 26789999999998765543332211100 0000
Q ss_pred CCCCCCCCCCCCceEEEEeeCCCEEEEEecC-----c-----------eEEEEECCCCcEEEeeeccCc--------cce
Q 008844 164 RNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-----G-----------EILVIDHKSNQIRALVPVSGA--------AVI 219 (551)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~--------~~i 219 (551)
..... ......=..+++.+...+|+.+..+ + .|.-.|++|++....++..|. ...
T Consensus 225 ~~~~~-~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 225 GDAWK-TGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCccc-cCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 00000 0111112345777777778777632 2 688889999999777764332 111
Q ss_pred EEEEEeeCCC---EEEEeeCCCeEEEEe
Q 008844 220 KNIVFSRNGQ---YLLTNSNDRTIRIYD 244 (551)
Q Consensus 220 ~~l~~s~~g~---~l~t~s~Dg~i~iwd 244 (551)
.-+.+..+|+ .++.+..+|.+.++|
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlD 331 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLD 331 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEE
Confidence 1122334666 678899999999999
No 337
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.21 E-value=0.0008 Score=65.36 Aligned_cols=218 Identities=13% Similarity=0.220 Sum_probs=128.8
Q ss_pred ccccccCCCCccceeecccccceEEEEE---EcCC----CCEEEEEeC---------C-CeEEEEeccCC----ceeeEe
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIA---FNRR----GTLLAAGCS---------D-GSCVIWDFETR----GIAKEL 61 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~---fs~d----g~~latg~~---------d-g~I~iwd~~~~----~~~~~~ 61 (551)
|+|.|+.+.+....+.. .....++|++ |..+ -.+|++|+. . |.|.++++... ..+..+
T Consensus 4 i~l~d~~~~~~~~~~~l-~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFEL-EPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEETTTSSEEEEEEE-ETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEeCCCCeEEEEEEC-CCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 67888887765544332 2334455544 4432 468888754 2 89999999874 233444
Q ss_pred ecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe-EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEc
Q 008844 62 RDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDL 140 (551)
Q Consensus 62 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~ 140 (551)
..+...++|++|+-. ++. |+.+. .+.|.+|++...+ .......+.......+... ..+++++.....+.++.+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEE
Confidence 333457899999877 344 54444 5889999998887 5555544444333333332 227888888888888866
Q ss_pred CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCC-------C--cEEEee
Q 008844 141 STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKS-------N--QIRALV 211 (551)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~-------~--~~~~~~ 211 (551)
.........+..... +..++++.|-++++.++++..+|.|.++.... + +.....
T Consensus 157 ~~~~~~l~~va~d~~-----------------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~ 219 (321)
T PF03178_consen 157 DEENNKLILVARDYQ-----------------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS 219 (321)
T ss_dssp ETTTE-EEEEEEESS------------------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred EccCCEEEEEEecCC-----------------CccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence 553322222221111 11688888886777999999999999998763 2 232222
Q ss_pred eccCccceEEE---EEee--CCC------EEEEeeCCCeEEEEe
Q 008844 212 PVSGAAVIKNI---VFSR--NGQ------YLLTNSNDRTIRIYD 244 (551)
Q Consensus 212 ~~~~~~~i~~l---~~s~--~g~------~l~t~s~Dg~i~iwd 244 (551)
.......|+++ .+.| .+. .++.++.+|.|-+.-
T Consensus 220 ~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 220 SFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 22446677777 5445 222 478888999988554
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.21 E-value=0.00088 Score=66.94 Aligned_cols=65 Identities=9% Similarity=0.145 Sum_probs=47.4
Q ss_pred eeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecC-CCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 295 WKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGP-KEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 295 ~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h-~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
|..+++||+|++||.-.. +|.+.|.... .+.+..+... ......|.|+-+...++.- ...|.+..
T Consensus 219 i~~iavSpng~~iAl~t~---~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTD---SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred eEEEEECCCCCEEEEEEC---CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 448999999999999998 8999999988 6666666544 4567889997765544444 33455554
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0047 Score=61.37 Aligned_cols=247 Identities=16% Similarity=0.183 Sum_probs=150.7
Q ss_pred eEEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE-eCCCCEEEEEcCCCeEE
Q 008844 25 VMKCIAFNRRGTLLAAGC-SDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS-AADKSLTLWDVLKGEKI 102 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~-~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~~ 102 (551)
....+.+.++|..+.... ....+.+.+.. .........-+ ...-..++.++.+..++.. ..++.|.+.|..+...+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g-~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVG-GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCC-CccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 455677888885444433 22245555554 22222211110 1344567788877755444 44588888886655554
Q ss_pred EEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q 008844 103 TRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN 182 (551)
Q Consensus 103 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 182 (551)
....... ....++++
T Consensus 110 ~~~~vG~-----------------------------------------------------------------~P~~~~~~ 124 (381)
T COG3391 110 GSIPVGL-----------------------------------------------------------------GPVGLAVD 124 (381)
T ss_pred eEeeecc-----------------------------------------------------------------CCceEEEC
Confidence 4443222 34567788
Q ss_pred eCCCEEEEEec---CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee-CCCeEEEEeCcCCccccchhhhh
Q 008844 183 KYGDLVYVGNS---KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS-NDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 183 ~~g~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
++++.++++.. ++.+.+.|..+.+...... ....+ ..++++|+|..+++.. .++.|.+++....
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~---------- 192 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN---------- 192 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc----------
Confidence 88878877766 6899999999999987764 33344 8899999999666554 6889999982111
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEE-EecCC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKI-LEGPK 336 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~-l~~h~ 336 (551)
..........-.+...++ .+.++|+|.++........++.+.+.|.. +..... +....
T Consensus 193 -------------------~v~~~~~~~~~~~~~~P~-~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 252 (381)
T COG3391 193 -------------------SVVRGSVGSLVGVGTGPA-GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS 252 (381)
T ss_pred -------------------ceeccccccccccCCCCc-eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc
Confidence 000000000001111111 67899999988777763223688888888 555544 22111
Q ss_pred CceEEEEEecCCCeEEEEcC-CCcEEEEecCCCCc
Q 008844 337 EALIDLAWHPVHPIIVSVSL-TGWVYIWAKDYTEN 370 (551)
Q Consensus 337 ~~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~~~~~ 370 (551)
.....+..+|++.++.+... .+.+.+-+..+...
T Consensus 253 ~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 253 GAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred CCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 15677899999998888744 57888888776543
No 340
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00012 Score=69.60 Aligned_cols=257 Identities=15% Similarity=0.140 Sum_probs=155.7
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC--C-eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeC-CCCcEEEEc
Q 008844 66 CVAAITSVCWSKYGHRILVSAADKSLTLWDVLK--G-EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPL-SSAPMIVDL 140 (551)
Q Consensus 66 h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~--~-~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~-~~~i~i~d~ 140 (551)
|...|+.+.-+ -.+++++++.||.++.|--.. | +.+..+..|. .+.+++.+-++ .++.+.+. +..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg---~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG---WLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc---eeEeeccCcccceeEEEe
Confidence 56777776555 367999999999999997432 1 1122222222 23344444443 35666555 889999988
Q ss_pred CCCceeee-ccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE-eeCC---CEEEEE-ecCceEEEEECCCCcE-EEeeec
Q 008844 141 STGSTSIL-PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF-NKYG---DLVYVG-NSKGEILVIDHKSNQI-RALVPV 213 (551)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~g---~~l~~g-~~dg~i~i~d~~~~~~-~~~~~~ 213 (551)
.+-..... .+.. .+..++| ...| ..|+++ -.+|.|.|+|-....+ ...+..
T Consensus 84 En~DminmiKL~~----------------------lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 84 ENFDMINMIKLVD----------------------LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred eccchhhhccccc----------------------CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 76543311 1100 1222333 2223 244444 3578999999887653 444444
Q ss_pred cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee
Q 008844 214 SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293 (551)
Q Consensus 214 ~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 293 (551)
-|..+|..+.+++-+..+++....|.|.-|..-.+. + .+.....+.......+..+........
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~-------q-------fPr~~l~~~~K~eTdLy~f~K~Kt~pt-- 205 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPF-------Q-------FPRTNLNFELKHETDLYGFPKAKTEPT-- 205 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcc-------c-------CccccccccccccchhhcccccccCcc--
Confidence 789999999999999999999999999999821100 0 000000011111111222222222233
Q ss_pred eeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec--------------------------------CC-Cce
Q 008844 294 HWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG--------------------------------PK-EAL 339 (551)
Q Consensus 294 ~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~--------------------------------h~-~~v 339 (551)
++.|+|+|..+.+-+. |..|+++... |++++.+.- |. ..-
T Consensus 206 ---s~Efsp~g~qistl~~---DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~ 279 (558)
T KOG0882|consen 206 ---SFEFSPDGAQISTLNP---DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVG 279 (558)
T ss_pred ---ceEEccccCcccccCc---ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccc
Confidence 8899999999999998 9999999998 766554321 11 123
Q ss_pred EEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 340 IDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 340 ~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
+.+.|...+++|+-++.=| |+|.++.+....
T Consensus 280 ~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 280 TNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred ceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 5567888888888877544 788888776543
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.14 E-value=0.0027 Score=60.23 Aligned_cols=149 Identities=21% Similarity=0.284 Sum_probs=91.2
Q ss_pred CCCCEEEEEeCCCeEEEEecc-CCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEE-------
Q 008844 33 RRGTLLAAGCSDGSCVIWDFE-TRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITR------- 104 (551)
Q Consensus 33 ~dg~~latg~~dg~I~iwd~~-~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~------- 104 (551)
..++.|+.|+.+| |.+++.. ......... ..+|..|...++-+.|++-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 4678999999988 8999983 333333332 34599999999877777665 59999999865443331
Q ss_pred --------EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce----eeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 105 --------IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST----SILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 105 --------~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
+.....+...+ .-........+++.....+.+|....... .......
T Consensus 79 ~~~~~~~~~~~~~~v~~f~-~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-------------------- 137 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFA-VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-------------------- 137 (275)
T ss_pred ccccccccccccCCeeEEe-eccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc--------------------
Confidence 11111222222 01222233455555555888887766421 1111111
Q ss_pred CCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEee
Q 008844 173 PFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALV 211 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 211 (551)
+..+.+++|. ++.|++|..+ ...+.|+.++.....+
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence 1278888888 5678888755 4889999987775554
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.14 E-value=0.0014 Score=64.59 Aligned_cols=262 Identities=17% Similarity=0.160 Sum_probs=121.8
Q ss_pred cEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc----
Q 008844 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS---- 144 (551)
Q Consensus 69 ~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~---- 144 (551)
.|+.++|+++..-|+++...|.|.||.+...+... -..........+.+ ....++.-.+.|+....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRR---------FSLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-----------GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCccccc---------ccccCCCcceEEehhhCCccc
Confidence 58899999998899999999999999886543322 00000011111111 00111122233333211
Q ss_pred -eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc-------Cc
Q 008844 145 -TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS-------GA 216 (551)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-------~~ 216 (551)
.-..+...... ....|++++.+.-| ++++|+.+|.+.|.|++....+..-... ..
T Consensus 73 ~~gf~P~~l~~~----------------~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~ 135 (395)
T PF08596_consen 73 KEGFLPLTLLDA----------------KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS 135 (395)
T ss_dssp SEEEEEEEEE-------------------S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS--
T ss_pred ccccCchhheec----------------cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccc
Confidence 11122111111 11289999997554 8999999999999999988886663322 24
Q ss_pred cceEEEEEee-----CC---CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCc---ceeeeec-cceeeeeec
Q 008844 217 AVIKNIVFSR-----NG---QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNG---IEKMKMV-GSKCLALFR 284 (551)
Q Consensus 217 ~~i~~l~~s~-----~g---~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~ 284 (551)
..|+++.|.- |+ -.|++|+..|.+.+|.+ .|..+..-.............. +..+... +..+.....
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI-lp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI-LPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATIS 214 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE-EE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHH
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEE-ecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchh
Confidence 5688888873 22 36889999999999994 3321111100000000000000 0000000 000111111
Q ss_pred ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEe-----cCCCeEEEEcCCC
Q 008844 285 EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWH-----PVHPIIVSVSLTG 358 (551)
Q Consensus 285 ~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~s-----p~~~~l~s~s~dg 358 (551)
..+..-. .+. -..++++++ +..++|+... .+.........-....+.+- ..+..|++-..+|
T Consensus 215 ~~~~l~~-----g~~---i~g~vVvvS----e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G 282 (395)
T PF08596_consen 215 AMQGLSK-----GIS---IPGYVVVVS----ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNG 282 (395)
T ss_dssp HHHGGGG-----T-------EEEEEE-----SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTS
T ss_pred Hhhcccc-----CCC---cCcEEEEEc----ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCC
Confidence 0000000 000 012455555 4679999988 55544443222233344452 3566888888899
Q ss_pred cEEEEecCCCCc
Q 008844 359 WVYIWAKDYTEN 370 (551)
Q Consensus 359 ~i~iW~~~~~~~ 370 (551)
.|+++.+...+.
T Consensus 283 ~i~i~SLP~Lke 294 (395)
T PF08596_consen 283 SIRIYSLPSLKE 294 (395)
T ss_dssp EEEEEETTT--E
T ss_pred cEEEEECCCchH
Confidence 999999987653
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=5.6e-05 Score=76.84 Aligned_cols=143 Identities=13% Similarity=0.250 Sum_probs=101.3
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.++|++++ +++|+.|+.+|.|++++....- ...+ .|... ...|.++++|+.||+|.|..+..+.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~--~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~----- 104 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF--DHSSS------ILEGEYVASCSDDGKVVIGSLFTDD----- 104 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc-cccc--ccccc------ccCCceEEEecCCCcEEEeeccCCc-----
Confidence 45666664 5689999999999999976543 2222 33332 5679999999999999988733321
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC-----CCEEEEeeccCCcceEEEEecC--Cc
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD-----GEWVIAGSASKGEHKIYIWDRA--GY 327 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d-----g~~l~~gs~~~~dg~I~iwd~~--~~ 327 (551)
......+..++. +++++|+ .+.+++|+. .| +.++... |.
T Consensus 105 -------------------------~~~~~df~rpik-----sial~Pd~~~~~sk~fv~GG~---ag-lvL~er~wlgn 150 (846)
T KOG2066|consen 105 -------------------------EITQYDFKRPIK-----SIALHPDFSRQQSKQFVSGGM---AG-LVLSERNWLGN 150 (846)
T ss_pred -------------------------cceeEecCCcce-----eEEeccchhhhhhhheeecCc---ce-EEEehhhhhcC
Confidence 111223444454 8889987 566777776 56 8998887 55
Q ss_pred eeEE-EecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 328 LVKI-LEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 328 ~~~~-l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
.... +..-.++|.++.| .|++||-++.+| |+|+|+...+.
T Consensus 151 k~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred ccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccce
Confidence 4444 5556789999999 677999888666 89999987653
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.08 E-value=0.0039 Score=59.86 Aligned_cols=210 Identities=12% Similarity=0.058 Sum_probs=104.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEec--CCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS--KYG 79 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s--~~g 79 (551)
|+.+.|+.+++..+....- + .......++++.+.|+.......|+-.|+.+.+....+... ...+-...|. .++
T Consensus 61 nly~lDL~t~~i~QLTdg~-g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p--~~~~g~gt~v~n~d~ 136 (386)
T PF14583_consen 61 NLYLLDLATGEITQLTDGP-G-DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP--DDWKGYGTWVANSDC 136 (386)
T ss_dssp EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTS
T ss_pred ceEEEEcccCEEEECccCC-C-CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC--cccccccceeeCCCc
Confidence 4566677777654443321 1 11223456788888876666678999999998876666554 4455445664 356
Q ss_pred CEEEEEeC----------------------CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeC---CCC
Q 008844 80 HRILVSAA----------------------DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPL---SSA 134 (551)
Q Consensus 80 ~~l~s~s~----------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~ 134 (551)
.+++-.-. .+.|...|+.+|+....+....-.-.+.++|.. +.++..|-. +..
T Consensus 137 t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d--p~li~fCHEGpw~~V 214 (386)
T PF14583_consen 137 TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD--PTLIMFCHEGPWDLV 214 (386)
T ss_dssp SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE--EEEEEEEE-S-TTTS
T ss_pred cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC--CCEEEEeccCCccee
Confidence 65543211 223566688888877777766667788888864 334444432 221
Q ss_pred -cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEE-Ee----cCceEEEEECCCCcEE
Q 008844 135 -PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYV-GN----SKGEILVIDHKSNQIR 208 (551)
Q Consensus 135 -i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-g~----~dg~i~i~d~~~~~~~ 208 (551)
-++|-+++......++..... ...+..=-|.++|..|.. +. .+..|.-+|+.+++..
T Consensus 215 d~RiW~i~~dg~~~~~v~~~~~-----------------~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 215 DQRIWTINTDGSNVKKVHRRME-----------------GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp S-SEEEEETTS---EESS---T-----------------TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred ceEEEEEEcCCCcceeeecCCC-----------------CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 256766554332222211110 114555668999976654 22 2446888899988765
Q ss_pred EeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 209 ALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 209 ~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
.... ......+-.+++|++++-=+.|
T Consensus 278 ~~~~---~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 278 RLME---MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE---E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEe---CCceeeeEEcCCCCEEEecCCC
Confidence 4332 1234566677888876654444
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.0069 Score=55.50 Aligned_cols=205 Identities=11% Similarity=0.176 Sum_probs=108.0
Q ss_pred cccEEEEEecCCCCEEE-EEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 67 VAAITSVCWSKYGHRIL-VSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
...+..|+|.|+.+.|+ +....+.|..++. +|+.+..+.+....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~---------------------------------- 65 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFG---------------------------------- 65 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-S----------------------------------
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCC----------------------------------
Confidence 45699999999866554 5555777777775 57888777654310
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC--c--E--EEeeec----cC
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN--Q--I--RALVPV----SG 215 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~--~--~--~~~~~~----~~ 215 (551)
..-.+++..++.++++--.++.+.++++... . . ...+.. .+
T Consensus 66 -----------------------------D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (248)
T PF06977_consen 66 -----------------------------DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKG 116 (248)
T ss_dssp -----------------------------SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---
T ss_pred -----------------------------CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCC
Confidence 4456666666666665555788888877321 1 1 122221 24
Q ss_pred ccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc-cccceee
Q 008844 216 AAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ-DSITKMH 294 (551)
Q Consensus 216 ~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 294 (551)
+..+-.|+|++.++.|+++-...-.+||.+.... . .. .-.......+. .......
T Consensus 117 N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-~--------------~~---------~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 117 NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-G--------------GF---------DLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT----------------SS-----------EEEE-HHHH-HT--SS-
T ss_pred CcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-C--------------cc---------ceeeccccccccccceecc
Confidence 5678999999998888887777777777622100 0 00 00000011111 1111112
Q ss_pred eeeeEEcCC-CCEEEEeeccCCcceEEEEecCCceeEEEecCC---------CceEEEEEecCCCeEEEEcCCCcEEEE
Q 008844 295 WKAPCFSGD-GEWVIAGSASKGEHKIYIWDRAGYLVKILEGPK---------EALIDLAWHPVHPIIVSVSLTGWVYIW 363 (551)
Q Consensus 295 ~~~~~~s~d-g~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~---------~~v~~l~~sp~~~~l~s~s~dg~i~iW 363 (551)
.+++++.|. |++++.... ...|.++|..|+++..+.-.. ...-.|+|.++|++.++ +.-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~e---s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDE---SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETT---TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECC---CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 347888885 455555555 789999997788777665332 24678999999865444 455555554
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.07 E-value=1.1e-06 Score=86.63 Aligned_cols=160 Identities=18% Similarity=0.305 Sum_probs=104.8
Q ss_pred cceEEEEEEcCCC--CEEEEEeCCCeEEEEeccCCcee-eEeecccccccEEEEEecC-CCCEEEEEeC----CCCEEEE
Q 008844 23 HGVMKCIAFNRRG--TLLAAGCSDGSCVIWDFETRGIA-KELRDKECVAAITSVCWSK-YGHRILVSAA----DKSLTLW 94 (551)
Q Consensus 23 ~~~V~~l~fs~dg--~~latg~~dg~I~iwd~~~~~~~-~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~----dg~i~vw 94 (551)
...+.|++++.+. .++++|..+|.|.+-.+....-- ..+. .+|..++++++|++ |.+.|+.|-. |..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-ccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3457788876544 48899999999999877543322 2222 23578999999998 4556666632 6789999
Q ss_pred EcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 95 DVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
|+.++-. .+. ....|+. + ...
T Consensus 135 di~s~lt-----vPk--e~~~fs~----------~------------------------------------------~l~ 155 (783)
T KOG1008|consen 135 DINSLLT-----VPK--ESPLFSS----------S------------------------------------------TLD 155 (783)
T ss_pred ecccccC-----CCc--ccccccc----------c------------------------------------------ccc
Confidence 9876521 000 0000000 0 000
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee-CCCEEEEeeCCCeEEEEeC
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR-NGQYLLTNSNDRTIRIYDN 245 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd~ 245 (551)
...++||-.+.+++++|.....++++|++........ .....+..+..+| .+.++++.. ||.|.+||.
T Consensus 156 gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 156 GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred CccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 4457888888899999999999999999843321111 2344567788888 777887775 999999994
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=3.5e-05 Score=78.48 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=61.9
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.++++||+|..-.|+.|-.-|.+.+|...+.+..... ..|..+|..+.||++|..|+++..-|.+.+|.
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 6678999999888999999999999998887765544 38999999999999999999999999999998
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.02 E-value=0.011 Score=59.74 Aligned_cols=248 Identities=13% Similarity=0.180 Sum_probs=128.5
Q ss_pred EEEEEEcCCCCEEEEE-eCC----CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCC----------
Q 008844 26 MKCIAFNRRGTLLAAG-CSD----GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKS---------- 90 (551)
Q Consensus 26 V~~l~fs~dg~~latg-~~d----g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~---------- 90 (551)
+..+++||+|++||.+ +.. .+|+|+|+.+++.+...... .....+.|.++++.|+....+..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467899999999876 233 35999999999776543211 12234999999888777665431
Q ss_pred -EEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 91 -LTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 91 -i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
|..|.+.++..-.. +.|... +
T Consensus 203 ~v~~~~~gt~~~~d~---------lvfe~~------------~------------------------------------- 224 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDE---------LVFEEP------------D------------------------------------- 224 (414)
T ss_dssp EEEEEETTS-GGG-E---------EEEC-T------------T-------------------------------------
T ss_pred EEEEEECCCChHhCe---------eEEeec------------C-------------------------------------
Confidence 34444433211000 001000 0
Q ss_pred CCCCCCceEEEEeeCCCEEEEEec---C-ceEEEEECCCC-----cEEEeeeccCccceEEEEEeeCCCEEEEeeC---C
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNS---K-GEILVIDHKSN-----QIRALVPVSGAAVIKNIVFSRNGQYLLTNSN---D 237 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~---d-g~i~i~d~~~~-----~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~---D 237 (551)
.......+..++++++|++... + ..+++.++..+ ...... .....+....-+..+.+++.... .
T Consensus 225 --~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~--~~~~~~~~~v~~~~~~~yi~Tn~~a~~ 300 (414)
T PF02897_consen 225 --EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS--PREDGVEYYVDHHGDRLYILTNDDAPN 300 (414)
T ss_dssp --CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE--ESSSS-EEEEEEETTEEEEEE-TT-TT
T ss_pred --CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe--CCCCceEEEEEccCCEEEEeeCCCCCC
Confidence 0001446777888888776543 2 46888898875 333333 23333333332334444333322 3
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
+.|...++..+.. ......+..+...+. -..+...+.+|+.....++..
T Consensus 301 ~~l~~~~l~~~~~--------------------------~~~~~~l~~~~~~~~-----l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 301 GRLVAVDLADPSP--------------------------AEWWTVLIPEDEDVS-----LEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp -EEEEEETTSTSG--------------------------GGEEEEEE--SSSEE-----EEEEEEETTEEEEEEEETTEE
T ss_pred cEEEEeccccccc--------------------------ccceeEEcCCCCcee-----EEEEEEECCEEEEEEEECCcc
Confidence 4444444221110 001112222322211 123344566777766665677
Q ss_pred eEEEEecC-CceeEEEecCC-CceEEEEEecCCC-eEEE-EcC--CCcEEEEecCCCC
Q 008844 318 KIYIWDRA-GYLVKILEGPK-EALIDLAWHPVHP-IIVS-VSL--TGWVYIWAKDYTE 369 (551)
Q Consensus 318 ~I~iwd~~-~~~~~~l~~h~-~~v~~l~~sp~~~-~l~s-~s~--dg~i~iW~~~~~~ 369 (551)
.|+++++. +.....+.... +.|..+...++++ +.++ .|. -++|+.||+.+++
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 89999999 88877777654 3356666566665 2222 332 5678888888765
No 349
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0014 Score=64.07 Aligned_cols=151 Identities=15% Similarity=0.228 Sum_probs=103.8
Q ss_pred CCEE-EEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCC----CcEEEEeeCCCCcEEEEcCCCceeeeccccC
Q 008844 79 GHRI-LVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSST----PSLCLACPLSSAPMIVDLSTGSTSILPIAVP 153 (551)
Q Consensus 79 g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 153 (551)
.++| .++.....|.-.|++.|+.+..+.++..+.-+.+.|+... ...-+.+-.+..+.-||.+-...-.+.+...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 3444 3445566788889999999999999988777778776532 2245777888899999988544322111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEE
Q 008844 154 DVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLT 233 (551)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t 233 (551)
..........|++-+.+| +|++|+.+|.|++||--..+....++ +-..+|..|..+.+|++|+.
T Consensus 425 --------------kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlP-gLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 425 --------------KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALP-GLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred --------------cccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhccc-ccCCceeeEEeeccCcEEEE
Confidence 011122256677777666 69999999999999983333344444 67889999999999998876
Q ss_pred eeCCCeEEEEeCc
Q 008844 234 NSNDRTIRIYDNL 246 (551)
Q Consensus 234 ~s~Dg~i~iwd~~ 246 (551)
. .+..+.+.++.
T Consensus 489 T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 489 T-CKTYLLLIDTL 500 (644)
T ss_pred e-cccEEEEEEEe
Confidence 6 45677777744
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0011 Score=68.27 Aligned_cols=124 Identities=13% Similarity=0.193 Sum_probs=84.2
Q ss_pred ccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeee
Q 008844 216 AAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHW 295 (551)
Q Consensus 216 ~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 295 (551)
..++.+++.+.+-+.+|+|-.+|.|..+. -.. ++-++. .......-..+|+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~-GDi-----------------------~RDrgs-r~~~~~~~~~pIT---- 175 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYK-GDI-----------------------LRDRGS-RQDYSHRGKEPIT---- 175 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEc-Ccc-----------------------hhcccc-ceeeeccCCCCce----
Confidence 57789999999999999999999999996 000 001111 1222223345566
Q ss_pred eeeEEcCCCCE-EEEeeccCCcceEEEEecCCce--eEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 296 KAPCFSGDGEW-VIAGSASKGEHKIYIWDRAGYL--VKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 296 ~~~~~s~dg~~-l~~gs~~~~dg~I~iwd~~~~~--~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
.++|-.++.. +++++ -..|.+|.+.|+. +..+..|..++.+..|++....+++++ +.-|++|+.+..+.--
T Consensus 176 -gL~~~~d~~s~lFv~T----t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 176 -GLALRSDGKSVLFVAT----TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCF 249 (933)
T ss_pred -eeEEecCCceeEEEEe----cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceee
Confidence 7888888877 34444 3579999999443 555777888899999998877566665 4578999987655433
Q ss_pred ee
Q 008844 373 AF 374 (551)
Q Consensus 373 ~~ 374 (551)
+|
T Consensus 250 af 251 (933)
T KOG2114|consen 250 AF 251 (933)
T ss_pred ee
Confidence 43
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0091 Score=56.75 Aligned_cols=227 Identities=16% Similarity=0.224 Sum_probs=121.7
Q ss_pred EecCCCCEE-EEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEE-EecCCCCCcEEEEeeCCCCcEEEEcCCCce-eeecc
Q 008844 74 CWSKYGHRI-LVSAADKSLTLWDVLKGEKITRIVLQQTPLQAR-LHPGSSTPSLCLACPLSSAPMIVDLSTGST-SILPI 150 (551)
Q Consensus 74 ~~s~~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~ 150 (551)
.|.++...| ++--..+.|.-|+..++.. ..+..+....++. +...+ .++++. ..+.+++..++.. ..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g----~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGG----RLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCC----eEEEEc--cccEEEeccCCceeEEecc
Confidence 466665544 3334467788888765542 3333333332222 22221 233332 3344555544444 22211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-----------CceEEEEECCCCcEEEeeeccCccce
Q 008844 151 AVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-----------KGEILVIDHKSNQIRALVPVSGAAVI 219 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i 219 (551)
..... .....+.+...|+|.+.+.... -|.|+.+|. .+.....+. .+-..-
T Consensus 104 ~~~~~----------------~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~ 165 (307)
T COG3386 104 PEDGL----------------PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIP 165 (307)
T ss_pred ccCCC----------------CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEec
Confidence 11110 1115667788888876554433 144555565 344444442 445556
Q ss_pred EEEEEeeCCCEEEEeeC-CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 220 KNIVFSRNGQYLLTNSN-DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
+.|+||||++.|+.+.. .+.|.-|++.... ....+......+....+..- .+
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~----------------------g~~~~~~~~~~~~~~~G~PD-----G~ 218 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPAT----------------------GPIGGRRGFVDFDEEPGLPD-----GM 218 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCccc----------------------CccCCcceEEEccCCCCCCC-----ce
Confidence 78999999988777754 4777777721100 00000111111111122222 56
Q ss_pred EEcCCCCEEEEeeccCCc-ceEEEEecCCceeEEEecCCCceEEEEEe-cCCCeEEEEc
Q 008844 299 CFSGDGEWVIAGSASKGE-HKIYIWDRAGYLVKILEGPKEALIDLAWH-PVHPIIVSVS 355 (551)
Q Consensus 299 ~~s~dg~~l~~gs~~~~d-g~I~iwd~~~~~~~~l~~h~~~v~~l~~s-p~~~~l~s~s 355 (551)
+...+|.+-+++.. . +.|.+|+..|+++..+..+...+++++|- |+.+.|+..+
T Consensus 219 ~vDadG~lw~~a~~---~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 219 AVDADGNLWVAAVW---GGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEeCCCCEEEeccc---CCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 78888888765544 3 38999999999999999887888999984 4445444443
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.95 E-value=0.019 Score=59.20 Aligned_cols=163 Identities=18% Similarity=0.216 Sum_probs=92.9
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC--CCCEEEEEe---------CCCCEEEEEcCCCeEEEE
Q 008844 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK--YGHRILVSA---------ADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s---------~dg~i~vwd~~~~~~~~~ 104 (551)
..++.++.+|.|+-+|..+|+.+..+....+...-..+.-+| .+..++.++ .++.|..+|..+|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 577788889999999999999888776542110001111112 124455553 367899999999999988
Q ss_pred EEcCCC-ee---------------------EEEEecCCCCCcEEEEeeCCC------------------CcEEEEcCCCc
Q 008844 105 IVLQQT-PL---------------------QARLHPGSSTPSLCLACPLSS------------------APMIVDLSTGS 144 (551)
Q Consensus 105 ~~~~~~-~~---------------------~~~~~p~~~~~~~~~~~~~~~------------------~i~i~d~~~~~ 144 (551)
+..... .. ...+.+. ...++++..++ .+..+|..+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~---~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK---TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC---CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 866321 00 0111111 12455555443 68888998888
Q ss_pred eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE-eeCCC---EEEEEecCceEEEEECCCCcEEEeee
Q 008844 145 TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF-NKYGD---LVYVGNSKGEILVIDHKSNQIRALVP 212 (551)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~---~l~~g~~dg~i~i~d~~~~~~~~~~~ 212 (551)
................. . ..+..... .-+|. .+++++.+|.+..+|..+++.+....
T Consensus 268 ~~W~~~~~~~~~~~~~~----------~-s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 268 VKWFYQTTPHDLWDYDG----------P-NQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEEEeeCCCCCCccccc----------C-CCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 76543211110000000 0 00000000 11232 68888899999999999999987764
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0054 Score=60.89 Aligned_cols=197 Identities=16% Similarity=0.218 Sum_probs=141.5
Q ss_pred EEEEEEcCCCCEEEE-EeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC---CCCEEEEEcCCCeE
Q 008844 26 MKCIAFNRRGTLLAA-GCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA---DKSLTLWDVLKGEK 101 (551)
Q Consensus 26 V~~l~fs~dg~~lat-g~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~ 101 (551)
-..+++++.+..++. ...+..|.+.|..+.......... .....++++++++.++.+.. ++++.+.|-.++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 346788888874444 444689999998887777766542 36778999999988877765 68999999999998
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
+........+..+.+.|++. ..+++-..++.+.+++........ ...... .........+.+
T Consensus 153 ~~~~~vG~~P~~~a~~p~g~--~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~---------------~~~~~~P~~i~v 214 (381)
T COG3391 153 TATIPVGNTPTGVAVDPDGN--KVYVTNSDDNTVSVIDTSGNSVVR-GSVGSL---------------VGVGTGPAGIAV 214 (381)
T ss_pred EEEEecCCCcceEEECCCCC--eEEEEecCCCeEEEEeCCCcceec-cccccc---------------cccCCCCceEEE
Confidence 88876666668899999874 355555678899999966665442 110000 001115677899
Q ss_pred eeCCCEEEEEecC---ceEEEEECCCCcEEEe-eeccCccceEEEEEeeCCCEEEEee-CCCeEEEEe
Q 008844 182 NKYGDLVYVGNSK---GEILVIDHKSNQIRAL-VPVSGAAVIKNIVFSRNGQYLLTNS-NDRTIRIYD 244 (551)
Q Consensus 182 s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~t~s-~Dg~i~iwd 244 (551)
+++|..+++.... +.+...|..++..... ...... ....+.++|+|.++.+.. ..+.+.+.|
T Consensus 215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 9999877776544 5999999999988666 322333 566789999999888774 457888888
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.89 E-value=0.0095 Score=58.88 Aligned_cols=202 Identities=15% Similarity=0.118 Sum_probs=114.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee-------------------------Eee----------------c
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAK-------------------------ELR----------------D 63 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~-------------------------~~~----------------~ 63 (551)
.|+++.|+++..-||+|...|.|.||.+...+... .+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999998899999999999999775432111 000 0
Q ss_pred ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC---------CeeEEEEec-----CCCCCcEEEEe
Q 008844 64 KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ---------TPLQARLHP-----GSSTPSLCLAC 129 (551)
Q Consensus 64 ~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~p-----~~~~~~~~~~~ 129 (551)
+...++|++++.|.-| +++.|..+|.+.|.|++....+..-.... .+..+.|.. ++.....++++
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1125789999998544 89999999999999998888887754433 244555542 22233577888
Q ss_pred eCCCCcEEEEcCC---CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE-EeeC-----------------C---
Q 008844 130 PLSSAPMIVDLST---GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC-FNKY-----------------G--- 185 (551)
Q Consensus 130 ~~~~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~-----------------g--- 185 (551)
...|.+.+|.+-- +........... .+...+..+. |+.+ |
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~----------------~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATT----------------NHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE------------------SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccc----------------cCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 8889999997742 111111111110 0000222111 2111 1
Q ss_pred CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEe-----eCCCEEEEeeCCCeEEEEe
Q 008844 186 DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFS-----RNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 186 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s-----~~g~~l~t~s~Dg~i~iwd 244 (551)
+.+++......++++...+.+...... ...-....+.+- ..+..|++-..+|.|++|.
T Consensus 226 ~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 226 PGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp -EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred CcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 224455557789999999887755543 222233334442 3566788888999999998
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.88 E-value=0.0034 Score=59.11 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=91.2
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC----------CCCEEEEEcCCCeEEEEEEcCCCeeEE
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA----------DKSLTLWDVLKGEKITRIVLQQTPLQA 114 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 114 (551)
+.|.|+|..+++.+-.+.. +-.-.+..+|+++.+++++. .-.|.+||..+-.....+..+......
T Consensus 17 ~rv~viD~d~~k~lGmi~~----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeec----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4799999999988777753 23344668999999987642 346899999998888877765431110
Q ss_pred EEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-
Q 008844 115 RLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS- 193 (551)
Q Consensus 115 ~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~- 193 (551)
.. + ....++++.+|+++++...
T Consensus 93 ~~-~--------------------------------------------------------~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 93 VV-P--------------------------------------------------------YKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp BS-----------------------------------------------------------GGGEEE-TTSSEEEEEEES
T ss_pred ec-c--------------------------------------------------------cccceEEccCCcEEEEEccC
Confidence 00 0 3345688889998888654
Q ss_pred -CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 194 -KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 194 -dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
--.|.|.|+..++.+..+..+....|. =+. .+-+.+-|.||.+....
T Consensus 116 Pa~SVtVVDl~~~kvv~ei~~PGC~~iy---P~~-~~~F~~lC~DGsl~~v~ 163 (342)
T PF06433_consen 116 PATSVTVVDLAAKKVVGEIDTPGCWLIY---PSG-NRGFSMLCGDGSLLTVT 163 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEGTSEEEEE---EEE-TTEEEEEETTSCEEEEE
T ss_pred CCCeEEEEECCCCceeeeecCCCEEEEE---ecC-CCceEEEecCCceEEEE
Confidence 467999999999999888644433222 112 24577788999988887
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.85 E-value=0.021 Score=55.44 Aligned_cols=172 Identities=10% Similarity=0.117 Sum_probs=109.4
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEE---EecCC----CCEEEEEeC----------CCCEEEEEcCCC-------e
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSV---CWSKY----GHRILVSAA----------DKSLTLWDVLKG-------E 100 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l---~~s~~----g~~l~s~s~----------dg~i~vwd~~~~-------~ 100 (551)
..|++.|..+...+..+.... ...++++ .+..+ ..+|++|.. .|.|.++++... +
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 468899998888777666442 3344444 44432 467777753 288999999884 2
Q ss_pred EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc-eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 101 KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS-TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.+.......++.++....+ . ++++..+.+.+|++.... ......... .+...
T Consensus 81 ~i~~~~~~g~V~ai~~~~~-----~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~---------------------~~~i~ 133 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNG-----R-LVVAVGNKLYVYDLDNSKTLLKKAFYDS---------------------PFYIT 133 (321)
T ss_dssp EEEEEEESS-EEEEEEETT-----E-EEEEETTEEEEEEEETTSSEEEEEEE-B---------------------SSSEE
T ss_pred EEEEEeecCcceEhhhhCC-----E-EEEeecCEEEEEEccCcccchhhheecc---------------------eEEEE
Confidence 3344555667777766632 3 555556899999998888 332211111 33444
Q ss_pred EEeeCCCEEEEEecCceEEEEECC--CCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHK--SNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
+....+++|++|.....|.++... ..+....-.......++++.|-+++..++++..+|.+.++.
T Consensus 134 sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 134 SLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp EEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred EEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 555557799999988888877444 33333332224466788999987777999999999999998
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.78 E-value=0.018 Score=52.74 Aligned_cols=199 Identities=11% Similarity=0.187 Sum_probs=109.2
Q ss_pred ceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe--
Q 008844 24 GVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-- 100 (551)
Q Consensus 24 ~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-- 100 (551)
..++.|+|+|+.. ++|+....+.|..++.. |++++.+...+ .+..-.|++..++.++++.-.++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 4599999999755 66666777888888874 78888877653 4678889998888777776668999999883321
Q ss_pred ----EEEEEEc--C----CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC--C-cee--eeccccCCCCCCCCCCCCC
Q 008844 101 ----KITRIVL--Q----QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST--G-STS--ILPIAVPDVANGIAPSSRN 165 (551)
Q Consensus 101 ----~~~~~~~--~----~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~--~-~~~--~~~~~~~~~~~~~~~~~~~ 165 (551)
....+.. . ...-.++|.|... .+++ +.......++.+.. . ... ........
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~--~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~----------- 165 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTN--RLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDD----------- 165 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTT--EEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH------------
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCC--EEEE-EeCCCChhhEEEccccCccceeecccccccc-----------
Confidence 1222322 1 2367889988643 2444 44444455665544 1 111 00000000
Q ss_pred CCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCc--------cceEEEEEeeCCCEEEEeeC
Q 008844 166 KYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGA--------AVIKNIVFSRNGQYLLTNSN 236 (551)
Q Consensus 166 ~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~--------~~i~~l~~s~~g~~l~t~s~ 236 (551)
.......+.+++++|.. ++++.......|.++| .+|+.+..+.+... ...-.|+|.++|++.+++ .
T Consensus 166 ---~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-E 240 (248)
T PF06977_consen 166 ---DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-E 240 (248)
T ss_dssp ---HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-T
T ss_pred ---ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-C
Confidence 00111267899999876 5556666788899999 67777665543321 356789999999655544 6
Q ss_pred CCeEEEE
Q 008844 237 DRTIRIY 243 (551)
Q Consensus 237 Dg~i~iw 243 (551)
-+..++|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5555444
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.78 E-value=0.025 Score=50.49 Aligned_cols=182 Identities=14% Similarity=0.116 Sum_probs=110.8
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCee-E
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPL-Q 113 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~ 113 (551)
.++++.|+..+.+.--|..+|.....-.. ...|-+-+.- -|++++.|+..|.+.+.++.+|...+.+..-..+. .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 46888899999999999999987655432 2344333332 47789999999999999999998888887655433 3
Q ss_pred EEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec
Q 008844 114 ARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS 193 (551)
Q Consensus 114 ~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~ 193 (551)
....+++. ++..++.|+..+..|..+............ ...+-++.+-...|+++..
T Consensus 99 a~~d~~~g---lIycgshd~~~yalD~~~~~cVykskcgG~--------------------~f~sP~i~~g~~sly~a~t 155 (354)
T KOG4649|consen 99 AQCDFDGG---LIYCGSHDGNFYALDPKTYGCVYKSKCGGG--------------------TFVSPVIAPGDGSLYAAIT 155 (354)
T ss_pred eEEcCCCc---eEEEecCCCcEEEecccccceEEecccCCc--------------------eeccceecCCCceEEEEec
Confidence 44444433 788899999999999988776543211110 1223344453344666666
Q ss_pred CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 194 KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 194 dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.|.|.-.................++|.+--.. -+..+..++-||.+.-++
T Consensus 156 ~G~vlavt~~~~~~~~~w~~~~~~PiF~splc-v~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 156 AGAVLAVTKNPYSSTEFWAATRFGPIFASPLC-VGSSVIITTVDGVLTSFD 205 (354)
T ss_pred cceEEEEccCCCCcceehhhhcCCccccCcee-ccceEEEEEeccEEEEEc
Confidence 67766666555533222211222333221000 133455555666666665
No 359
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.77 E-value=0.039 Score=58.33 Aligned_cols=282 Identities=12% Similarity=0.164 Sum_probs=157.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEecc--CCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFE--TRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~--~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
.|.-..|--|..+|.++..||.+.-|-+. ++..-..-+.+-...|+.--.|+..++.-+.+..|+-..+|-.+ ++.+
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv 663 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLV 663 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEE
Confidence 45555666678899999999998876554 44432222112226788888887766655555567777777643 4433
Q ss_pred EE-EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc---eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 103 TR-IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS---TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 103 ~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
.. +....--..+.|+.+. ..-.++....+.+.+..+..-+ ...++... .+..
T Consensus 664 ~spls~kev~~~c~f~s~a--~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~----------------------~prr 719 (1096)
T KOG1897|consen 664 YSPLSLKEVNHMCPFNSDA--YPDSLASANGGALTIGTIDEIQKLHIRTVPLGE----------------------SPRR 719 (1096)
T ss_pred EeccchHHhhhhccccccc--CCceEEEecCCceEEEEecchhhcceeeecCCC----------------------Chhh
Confidence 22 2222211222222221 2234555566667766554422 22222111 4455
Q ss_pred EEEeeCCCEEEEEecC--------------ceEEEEECCCCcEEEeeeccCccc---eEEEEEeeC-CCEEEEeeC----
Q 008844 179 ACFNKYGDLVYVGNSK--------------GEILVIDHKSNQIRALVPVSGAAV---IKNIVFSRN-GQYLLTNSN---- 236 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~d--------------g~i~i~d~~~~~~~~~~~~~~~~~---i~~l~~s~~-g~~l~t~s~---- 236 (551)
+++.+....+++.+.. ..++++|-++.+.+...+...... |.++.|..+ +.++++|+.
T Consensus 720 I~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~P 799 (1096)
T KOG1897|consen 720 ICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYP 799 (1096)
T ss_pred eEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeecc
Confidence 5665544344433221 247788888877766554333333 444457777 677777742
Q ss_pred ------CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEe
Q 008844 237 ------DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAG 310 (551)
Q Consensus 237 ------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~g 310 (551)
.|.|.||.. .....+.....+ .+....+ +++ --+|++||+-
T Consensus 800 de~ep~~GRIivfe~-----------------------------~e~~~L~~v~e~--~v~Gav~-aL~-~fngkllA~I 846 (1096)
T KOG1897|consen 800 DENEPVNGRIIVFEF-----------------------------EELNSLELVAET--VVKGAVY-ALV-EFNGKLLAGI 846 (1096)
T ss_pred CCCCcccceEEEEEE-----------------------------ecCCceeeeeee--eecccee-ehh-hhCCeEEEec
Confidence 234444431 111112222211 1111111 111 1267777765
Q ss_pred eccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 311 SASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 311 s~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
. ..|++|+.. .+.++.-..|..++..+...-.+..++.|..=+++.+-.....+
T Consensus 847 n-----~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 847 N-----QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred C-----cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 4 479999999 76777777788899999999999999999987777776655433
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.76 E-value=9.4e-06 Score=80.16 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=99.9
Q ss_pred CceEEEEeeCC-CEEEEEe----cCceEEEEECCCC--cEE--EeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeC
Q 008844 175 TPTAACFNKYG-DLVYVGN----SKGEILVIDHKSN--QIR--ALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDN 245 (551)
Q Consensus 175 ~i~~~~~s~~g-~~l~~g~----~dg~i~i~d~~~~--~~~--~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~ 245 (551)
..++++|++-. ++||+|- .+-.+.|||+.++ .+. ..+.........+++|..+.+++++|...+.+.++|+
T Consensus 104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhh
Confidence 67788887754 5666664 3567999999887 221 1221112344558889988899999999999999993
Q ss_pred cCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEec
Q 008844 246 LLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDR 324 (551)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~ 324 (551)
+.. +.....-....+. .+..+| .+.|+++-. +|.|-+||.
T Consensus 184 Rqs------------------------------~~~~~svnTk~vq-----G~tVdp~~~nY~cs~~----dg~iAiwD~ 224 (783)
T KOG1008|consen 184 RQS------------------------------LDSVSSVNTKYVQ-----GITVDPFSPNYFCSNS----DGDIAIWDT 224 (783)
T ss_pred hhh------------------------------hhhhhhhhhhhcc-----cceecCCCCCceeccc----cCceeeccc
Confidence 211 0000000111222 566778 778887665 689999994
Q ss_pred C---CceeEEEecCCC----ceEEEEEecCCC-eEEEEcC-CCcEEEEecCC
Q 008844 325 A---GYLVKILEGPKE----ALIDLAWHPVHP-IIVSVSL-TGWVYIWAKDY 367 (551)
Q Consensus 325 ~---~~~~~~l~~h~~----~v~~l~~sp~~~-~l~s~s~-dg~i~iW~~~~ 367 (551)
. ..++..+..... .+..++|+|..+ .|+++.. .++|+++++..
T Consensus 225 ~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 225 YRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 3 445544443222 389999999877 6666665 67899999864
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.75 E-value=0.0041 Score=62.30 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=68.5
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
...++|.+.++ +|+-....+|.|+.--.......+... ..+..|-. |.+|+..+.+ .|.+||..
T Consensus 71 g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~--------- 134 (443)
T PF04053_consen 71 GLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWE--------- 134 (443)
T ss_dssp -SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TT---------
T ss_pred eeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhh---------
Confidence 34567777444 666666888999633222222223212 23344432 8777777554 89999921
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCc--------
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGY-------- 327 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~-------- 327 (551)
..+.++.+... .|. .+.|+++|++++..+. ..++|++....
T Consensus 135 --------------------~~~~i~~i~v~--~vk-----~V~Ws~~g~~val~t~----~~i~il~~~~~~~~~~~~~ 183 (443)
T PF04053_consen 135 --------------------TGKLIRRIDVS--AVK-----YVIWSDDGELVALVTK----DSIYILKYNLEAVAAIPEE 183 (443)
T ss_dssp --------------------T--EEEEESS---E-E-----EEEE-TTSSEEEEE-S-----SEEEEEE-HHHHHHBTTT
T ss_pred --------------------HcceeeEEecC--CCc-----EEEEECCCCEEEEEeC----CeEEEEEecchhccccccc
Confidence 12333333311 133 7899999999999985 67999988733
Q ss_pred ----eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEE
Q 008844 328 ----LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYI 362 (551)
Q Consensus 328 ----~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~i 362 (551)
.+..+.--...|.+.+|..+ -+|.|.. . .|+.
T Consensus 184 g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~lkY 219 (443)
T PF04053_consen 184 GVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-HLKY 219 (443)
T ss_dssp B-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-EEEE
T ss_pred CchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-eEEE
Confidence 44444333567889999766 3444433 3 5554
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00029 Score=70.02 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=75.8
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEE-EEEecCCCCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAIT-SVCWSKYGHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~-~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
-.|.-+.|+|.-.+||++..+|.|.++.+. .+.+.++..+ ...++ +++|.|||++|+.|-.||+|++.|+.+|..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p--~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP--GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC--CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 457889999999999999999999999988 6667777655 56666 9999999999999999999999999999888
Q ss_pred EE--EEcCCCeeEEEEec
Q 008844 103 TR--IVLQQTPLQARLHP 118 (551)
Q Consensus 103 ~~--~~~~~~~~~~~~~p 118 (551)
.. +....++....|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 44444555555553
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.57 E-value=0.0015 Score=68.95 Aligned_cols=147 Identities=15% Similarity=0.238 Sum_probs=96.7
Q ss_pred CEEEEE-ecCceEEEEECCCCcEEEeeeccCccceEEEEEee-----CCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 186 DLVYVG-NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR-----NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 186 ~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~-----~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
++|+.. .....|+-.|+..|+++..+......+|..++-.. .....++|-.++.+..||.+..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~----------- 562 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS----------- 562 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCC-----------
Confidence 444443 34578999999999999999755555565554321 1234566778889999993321
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCc-eeEEEecCCCc
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGY-LVKILEGPKEA 338 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~-~~~~l~~h~~~ 338 (551)
+.+++ . ...........+++++-+.+| +||+|+. +|.|++||.-|. .-..|.+-..+
T Consensus 563 ----------------~~k~v-~-~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~---~G~IRLyd~~g~~AKT~lp~lG~p 620 (794)
T PF08553_consen 563 ----------------GNKLV-D-SQSKQYSSKNNFSCFATTEDG-YIAVGSN---KGDIRLYDRLGKRAKTALPGLGDP 620 (794)
T ss_pred ----------------CCcee-e-ccccccccCCCceEEEecCCc-eEEEEeC---CCcEEeecccchhhhhcCCCCCCC
Confidence 11111 1 111122344456577766666 6788888 899999997643 33445666789
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
|..|..+.||+||++.+ +..|.|++..
T Consensus 621 I~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 621 IIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred eeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 99999999999888777 5567777753
No 364
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.52 E-value=0.025 Score=55.82 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=53.8
Q ss_pred eeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEE----EEEecC--------------CC-eEEEEcC
Q 008844 297 APCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALID----LAWHPV--------------HP-IIVSVSL 356 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~----l~~sp~--------------~~-~l~s~s~ 356 (551)
+++.+|++++.|+... -|.|.++|+. +..++.++|-.+.-.. ..-... .. +++-+-.
T Consensus 312 ~i~~sP~~~laA~tDs---lGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDS---LGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEECCCCCEEEEEcC---CCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 8899999998888766 7999999999 8888888875543111 110000 01 3344556
Q ss_pred CCcEEEEecCCCCcceeec
Q 008844 357 TGWVYIWAKDYTENWSAFA 375 (551)
Q Consensus 357 dg~i~iW~~~~~~~~~~~s 375 (551)
-|.|-||.+.++.+..+|.
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCeEEEEecCCCCEEEEEE
Confidence 8999999999988776654
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.008 Score=54.33 Aligned_cols=219 Identities=16% Similarity=0.201 Sum_probs=114.8
Q ss_pred cccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC-----CeEEEEeccCC-ceeeEeecccccccEEEEEecC
Q 008844 4 PIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD-----GSCVIWDFETR-GIAKELRDKECVAAITSVCWSK 77 (551)
Q Consensus 4 ~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d-----g~I~iwd~~~~-~~~~~~~~~~h~~~V~~l~~s~ 77 (551)
.++|+.+.+.|.++......----.=.|||||.+|+..-.| |.|-|||...+ +.+..+..| .-....+.|.+
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~--GiGpHev~lm~ 171 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTH--GIGPHEVTLMA 171 (366)
T ss_pred EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccC--CcCcceeEEec
Confidence 46788888777776543221112233699999999876443 78999998733 334455544 66778899999
Q ss_pred CCCEEEEEeC------------------CCCEEEEEcCCCeEEEEEEcCCC-----eeEEEEecCCCCCcEEEEeeCCC-
Q 008844 78 YGHRILVSAA------------------DKSLTLWDVLKGEKITRIVLQQT-----PLQARLHPGSSTPSLCLACPLSS- 133 (551)
Q Consensus 78 ~g~~l~s~s~------------------dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~~- 133 (551)
||+.|+.+.. .-++.+.|..+|..+.+...+.. +..+..-+++ .+.+.|-..|
T Consensus 172 DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg---tvwfgcQy~G~ 248 (366)
T COG3490 172 DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG---TVWFGCQYRGP 248 (366)
T ss_pred CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC---cEEEEEEeeCC
Confidence 9999888742 11233444445555544433311 2222222221 1222221111
Q ss_pred ---CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc-eEEEEECCCCcEEE
Q 008844 134 ---APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG-EILVIDHKSNQIRA 209 (551)
Q Consensus 134 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg-~i~i~d~~~~~~~~ 209 (551)
..-+.-...+......+...+. ....-...|-+++.+.+..+++..+-.| ...+||..++..+.
T Consensus 249 ~~d~ppLvg~~~~g~~l~~~~~pee------------~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 249 RNDLPPLVGHFRKGEPLEFLDLPEE------------QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred CccCCcceeeccCCCcCcccCCCHH------------HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 1111111111100000000000 0000011466788887777777766655 56799999999877
Q ss_pred eeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 210 LVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 210 ~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
...+... ..++- ...-+++.+.+|.|.++.
T Consensus 317 ~a~l~da---aGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 317 EAALPDA---AGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ccccccc---cccee--ccCceEEecCCceEEecc
Confidence 6543222 22333 333466677888888876
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.51 E-value=0.015 Score=60.75 Aligned_cols=132 Identities=12% Similarity=0.107 Sum_probs=68.9
Q ss_pred ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeee
Q 008844 195 GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKM 274 (551)
Q Consensus 195 g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (551)
+.+.+.++..+.... .....|..+.|||||..|+... ++.|.+--+.....+. ..+
T Consensus 430 gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l------------------ 485 (591)
T PRK13616 430 GQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YAL------------------ 485 (591)
T ss_pred ceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eee------------------
Confidence 455555655554432 2245699999999999888765 4777664322211110 000
Q ss_pred ccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEec--CCCceEEEEEecCCCeEE
Q 008844 275 VGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEG--PKEALIDLAWHPVHPIIV 352 (551)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~--h~~~v~~l~~sp~~~~l~ 352 (551)
.............+. .+.|.+++.++ .+... ++..++..++.|.....+.+ ...++..|+-++. .|+
T Consensus 486 --~~~~~l~~~l~~~~~-----~l~W~~~~~L~-V~~~~-~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iy 554 (591)
T PRK13616 486 --TNPREVGPGLGDTAV-----SLDWRTGDSLV-VGRSD-PEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVY 554 (591)
T ss_pred --cccEEeecccCCccc-----cceEecCCEEE-EEecC-CCCceEEEecCCccccccCCCCccCceEEEecCCc--eEE
Confidence 000111122223233 67899999865 44442 13445444454554443333 2567777877763 344
Q ss_pred EEcCCCcEE
Q 008844 353 SVSLTGWVY 361 (551)
Q Consensus 353 s~s~dg~i~ 361 (551)
....+|.+.
T Consensus 555 v~~~~g~~~ 563 (591)
T PRK13616 555 VTDARAVLQ 563 (591)
T ss_pred EEcCCceEE
Confidence 555566433
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00067 Score=67.51 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=75.9
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 146 (551)
...|.-+.|+|.-.+||++..+|.|.+..+. -+.+.++..+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~------------------------------------ 62 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE------------------------------------ 62 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCC------------------------------------
Confidence 3567889999998999999999999888876 555555543321
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCce-EEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEe
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPT-AACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFS 225 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s 225 (551)
.++ ++||.|+|+.|++|-.||+|.+.|+.++..+......-...|.++-|+
T Consensus 63 ----------------------------~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 63 ----------------------------NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ----------------------------ccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeecc
Confidence 344 999999999999999999999999999988777544566778888886
Q ss_pred e
Q 008844 226 R 226 (551)
Q Consensus 226 ~ 226 (551)
+
T Consensus 115 ~ 115 (665)
T KOG4640|consen 115 R 115 (665)
T ss_pred c
Confidence 3
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.072 Score=53.37 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=41.3
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeC
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN 227 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~ 227 (551)
++..+++||+|++||.-+.+|.+.|....-.+.+..+..........+.|.-+
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 78999999999999999999999999877666666664343455666777644
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.46 E-value=0.00037 Score=42.65 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=34.0
Q ss_pred ceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 327 YLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 327 ~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.++..+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778899999999999999999999999999996
No 370
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.45 E-value=0.14 Score=50.67 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=94.4
Q ss_pred CCCEEEEEeCCCeEEEEeccCCcee--eEeecccccccEEEEEecC----CCCEEEEEeCCCCEEEEEcCC--C------
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIA--KELRDKECVAAITSVCWSK----YGHRILVSAADKSLTLWDVLK--G------ 99 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~--~~~~~~~h~~~V~~l~~s~----~g~~l~s~s~dg~i~vwd~~~--~------ 99 (551)
+...|++|+..|.++||+...+... ..+-...-..+|..|..-. .....++.-.-..+.||.+.. |
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3468999999999999998644311 1221112357888887632 122233334567788887721 1
Q ss_pred ----eEEEEEEcCCCeeEEEEecCCCC--CcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 100 ----EKITRIVLQQTPLQARLHPGSST--PSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 100 ----~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
..+....++...+.++.-|-+.. ..++.+-+.||.+.+++-+.-..........
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l-------------------- 175 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL-------------------- 175 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC--------------------
Confidence 12333445556666776665443 4678888999999999877655322211111
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEEC
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDH 202 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~ 202 (551)
-+..++|.+.-..|++++....|..|..
T Consensus 176 -lPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 176 -LPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred -CCcCeEEeecCCEEEEecCceeEEEecH
Confidence 4456888888889999999988888875
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.013 Score=45.45 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=71.5
Q ss_pred EEEEEecC---C-CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 70 ITSVCWSK---Y-GHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 70 V~~l~~s~---~-g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
|++|++.. + .+.|++|+.|..|++|+ ....+..+.....+..+.-...+ .++.+..+|+|.+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~----~F~Y~l~NGTVGvY~~~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGGG----RFAYALANGTVGVYDRSQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCCC----EEEEEecCCEEEEEeCcceee
Confidence 56777654 2 26899999999999996 45788888888888887777653 699999999999997654433
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe---eCC-CEEEEEecCceEEE
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN---KYG-DLVYVGNSKGEILV 199 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~g-~~l~~g~~dg~i~i 199 (551)
..- .+..++++++. .+| ..|++|-.+|.|-+
T Consensus 76 RiK-----------------------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIK-----------------------SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eec-----------------------cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 221 01145555543 333 47899999998753
No 372
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0016 Score=65.80 Aligned_cols=119 Identities=12% Similarity=0.205 Sum_probs=86.1
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.+.--|++..+++++.|++.|.+++|+-..+.....-.....+.+..+..+++..++|.|+..|.|.++-+.......
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~-- 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD-- 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc--
Confidence 566677788899999999999999999988877555432355667778888888899999999999999732210000
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
...+... ..|...|+ +++|++++..|++|.. .|.|..-.+.
T Consensus 113 ----------------------~~~~t~~d~~~~~rVT-----al~Ws~~~~k~ysGD~---~Gkv~~~~L~ 154 (726)
T KOG3621|consen 113 ----------------------LDYVTPCDKSHKCRVT-----ALEWSKNGMKLYSGDS---QGKVVLTELD 154 (726)
T ss_pred ----------------------ceeeccccccCCceEE-----EEEecccccEEeecCC---CceEEEEEec
Confidence 0001111 11445555 9999999999999998 8888877665
No 373
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.11 Score=47.61 Aligned_cols=176 Identities=10% Similarity=0.160 Sum_probs=105.8
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 146 (551)
...|.++.|+|+.+.|++......-.||=...|..+.++....-.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~----------------------------------- 129 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS----------------------------------- 129 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-----------------------------------
Confidence 455999999999999999988888888877789988887654310
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEE-----eeec---cC-cc
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRA-----LVPV---SG-AA 217 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~-----~~~~---~~-~~ 217 (551)
..-.+.|..+|.++++--.++.++++.+.....+. .+++ .+ +.
T Consensus 130 ----------------------------DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~ 181 (316)
T COG3204 130 ----------------------------DPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNK 181 (316)
T ss_pred ----------------------------ChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCc
Confidence 22344455555555555555666665554332111 1111 22 56
Q ss_pred ceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc--ccccceeee
Q 008844 218 VIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF--QDSITKMHW 295 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~ 295 (551)
..-.++|+|..+.|+.+-.-.-+.||.+..... .-.+.....+ ...+.-..+
T Consensus 182 GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~--------------------------~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 182 GFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS--------------------------SLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred CceeeecCCCCceEEEEEccCCcEEEEEecCCc--------------------------ccccccccCcccccceEeecc
Confidence 678899999999898888878888887221100 0000001111 111222233
Q ss_pred eeeEEcC-CCCEEEEeeccCCcceEEEEecCCceeEEEec
Q 008844 296 KAPCFSG-DGEWVIAGSASKGEHKIYIWDRAGYLVKILEG 334 (551)
Q Consensus 296 ~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~ 334 (551)
+.+.|.+ .+.+|+-+.. .+.|.-.+..|..+..+.-
T Consensus 236 Sgl~~~~~~~~LLVLS~E---Sr~l~Evd~~G~~~~~lsL 272 (316)
T COG3204 236 SGLEFNAITNSLLVLSDE---SRRLLEVDLSGEVIELLSL 272 (316)
T ss_pred ccceecCCCCcEEEEecC---CceEEEEecCCCeeeeEEe
Confidence 4777876 4556666666 7788888888776665543
No 374
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.35 E-value=0.17 Score=49.38 Aligned_cols=228 Identities=14% Similarity=0.142 Sum_probs=92.1
Q ss_pred CCCEEEEEe-CCCeEEEEeccC----CceeeEeeccc-c----cccEEEEEecCCCCEEEEEeC------CCCEEEEEcC
Q 008844 34 RGTLLAAGC-SDGSCVIWDFET----RGIAKELRDKE-C----VAAITSVCWSKYGHRILVSAA------DKSLTLWDVL 97 (551)
Q Consensus 34 dg~~latg~-~dg~I~iwd~~~----~~~~~~~~~~~-h----~~~V~~l~~s~~g~~l~s~s~------dg~i~vwd~~ 97 (551)
..++|+..+ ..+.|.|.|+.+ .++.+++.... + -.....+..-|+|+.++|+-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 356777776 568899999984 34555554310 0 122334445578888887632 2457777777
Q ss_pred CCeEEEEEEcCCC----eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 98 KGEKITRIVLQQT----PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 98 ~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
+.+.......... .+.+-+.|.. .+++++.... ...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~---nvMiSSeWg~-P~~------------------------------------ 205 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRH---NVMISSEWGA-PSM------------------------------------ 205 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTT---TEEEE-B----HHH------------------------------------
T ss_pred cccccceeccCCCCCCCCCCeEEcCCC---CEEEEeccCC-hhh------------------------------------
Confidence 6666665544221 2333444431 1222221110 000
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCcc-ceEEEEEeeC--CCE-EEEeeCCCeEEEEeCcCCc
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAA-VIKNIVFSRN--GQY-LLTNSNDRTIRIYDNLLPL 249 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~l~~s~~--g~~-l~t~s~Dg~i~iwd~~~~~ 249 (551)
..--|++.. +..+....+|.+||+.+++.++++.++..+ ....|.|..+ ..+ ++.+....+|..|- ...
T Consensus 206 ---~~~Gf~~~d--~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~--k~~ 278 (461)
T PF05694_consen 206 ---FEKGFNPED--LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY--KDD 278 (461)
T ss_dssp ---HTT---TTT--HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE--E-E
T ss_pred ---cccCCChhH--hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE--EcC
Confidence 000011110 111222458999999999999999765543 4557777654 344 33333455555553 101
Q ss_pred cccch--hhhhhhccCCCCCcceeeeeccc---eeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEec
Q 008844 250 KNGLE--ALVDIEKGIAEPNGIEKMKMVGS---KCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDR 324 (551)
Q Consensus 250 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~ 324 (551)
.+... .+..+.. ....+. ..+..+......++ .+.+|.|.+||...+.. .|.|+.||+
T Consensus 279 ~g~W~a~kVi~ip~----------~~v~~~~lp~ml~~~~~~P~Lit-----DI~iSlDDrfLYvs~W~--~GdvrqYDI 341 (461)
T PF05694_consen 279 DGEWAAEKVIDIPA----------KKVEGWILPEMLKPFGAVPPLIT-----DILISLDDRFLYVSNWL--HGDVRQYDI 341 (461)
T ss_dssp TTEEEEEEEEEE------------EE--SS---GGGGGG-EE-----------EEE-TTS-EEEEEETT--TTEEEEEE-
T ss_pred CCCeeeeEEEECCC----------cccCcccccccccccccCCCceE-----eEEEccCCCEEEEEccc--CCcEEEEec
Confidence 00000 0000000 000000 00111111123334 88999999999999884 789999999
Q ss_pred C
Q 008844 325 A 325 (551)
Q Consensus 325 ~ 325 (551)
.
T Consensus 342 S 342 (461)
T PF05694_consen 342 S 342 (461)
T ss_dssp S
T ss_pred C
Confidence 8
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.33 E-value=0.028 Score=58.72 Aligned_cols=157 Identities=11% Similarity=0.083 Sum_probs=88.7
Q ss_pred eEEEEEEcCCCCEEEEEe------CCC--eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCC-EEEEE
Q 008844 25 VMKCIAFNRRGTLLAAGC------SDG--SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKS-LTLWD 95 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~------~dg--~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~-i~vwd 95 (551)
.+...++||+|+.+|... .|+ .|.+++.. +.. ..+.. ....+.-.|+|+|..|++...... +++.+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~---g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE---GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec---CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 567889999999887665 243 45555542 333 33322 223888999999998888764322 22222
Q ss_pred cCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
-.. .+.+.+..+..+.... .....
T Consensus 426 ~~~---------------------------------~gql~~~~vd~ge~~~-----------------------~~~g~ 449 (591)
T PRK13616 426 DPA---------------------------------TGQLARTPVDASAVAS-----------------------RVPGP 449 (591)
T ss_pred cCC---------------------------------CceEEEEeccCchhhh-----------------------ccCCC
Confidence 111 1122222222222110 01127
Q ss_pred ceEEEEeeCCCEEEEEecCceEEE---EECCCCcEEE----eeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILV---IDHKSNQIRA----LVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i---~d~~~~~~~~----~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
|..+.|+|||..|+... +|.|++ -....+.... .+...-...+.++.|..++.+ +++..++...+|.
T Consensus 450 Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~ 523 (591)
T PRK13616 450 ISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWY 523 (591)
T ss_pred cCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEE
Confidence 89999999998887765 578877 5545554211 121122334688999998885 4555555555665
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.053 Score=49.20 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=133.9
Q ss_pred CCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC-CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS-APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
+.|+++..+..+.....+.++|... ..++.+-.-| ...++|....+..+........ . -
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R------------H------f 115 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR------------H------F 115 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEecccCc------------e------e
Confidence 4577788888888888888888643 2344444444 4678888887765543322211 0 2
Q ss_pred ceEEEEeeCCCEEEEEec-----CceEEEEECCCCcE-EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEE-eCcCC
Q 008844 176 PTAACFNKYGDLVYVGNS-----KGEILVIDHKSNQI-RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIY-DNLLP 248 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~-----dg~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iw-d~~~~ 248 (551)
.-.-+|+++|.+|+..-. .|.|-|||.+.+-. +..+. .|.-.-..+.|.+||+.|+.+ +|-|..- |.-..
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGrtlvva--nGGIethpdfgR~ 192 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGRTLVVA--NGGIETHPDFGRT 192 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc-cCCcCcceeEEecCCcEEEEe--CCceecccccCcc
Confidence 223469999999988643 47899999985533 44444 566666789999999988876 3555554 20000
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccc--cceeeeeeeEEcCCCCEEEEeeccC--CcceEEEEec
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDS--ITKMHWKAPCFSGDGEWVIAGSASK--GEHKIYIWDR 324 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~s~dg~~l~~gs~~~--~dg~I~iwd~ 324 (551)
. --+..+.. ....+...++. .+..|.-+ ...+.+.++...+||..++.+-..+ .|.-..+=..
T Consensus 193 ~----lNldsMeP------Slvlld~atG~---liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~ 259 (366)
T COG3490 193 E----LNLDSMEP------SLVLLDAATGN---LIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF 259 (366)
T ss_pred c----cchhhcCc------cEEEEeccccc---hhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec
Confidence 0 00000000 01111111222 12222222 3444556888899988777665522 0111111111
Q ss_pred C-CceeEEEecCC-------CceEEEEEecCCCeEEEEcC-CCcEEEEecCCCCc
Q 008844 325 A-GYLVKILEGPK-------EALIDLAWHPVHPIIVSVSL-TGWVYIWAKDYTEN 370 (551)
Q Consensus 325 ~-~~~~~~l~~h~-------~~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~~~~~ 370 (551)
. |+.+..+.... ..|-+|+.+.+..+++..+- .+...+||..++..
T Consensus 260 ~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 260 RKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred cCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 2 55555544332 34778888776666666665 55677899998764
No 377
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.25 E-value=0.33 Score=50.41 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=88.9
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeEeeccccc--ccEEEEEecCCCCEEEEEeC------CCCEEEEEcCCCeEEEEEEc
Q 008844 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKECV--AAITSVCWSKYGHRILVSAA------DKSLTLWDVLKGEKITRIVL 107 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~--~~V~~l~~s~~g~~l~s~s~------dg~i~vwd~~~~~~~~~~~~ 107 (551)
..|+.++.++.|.-.|..+|+.+.......+. ..+++--..-++ .|+++.. +|.|..+|..+|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 46777888999999999999988776532111 112211111134 4555432 68999999999998887654
Q ss_pred CCCee---------------------------------EEEEecCCCCCcEEEEeeC---------------CCCcEEEE
Q 008844 108 QQTPL---------------------------------QARLHPGSSTPSLCLACPL---------------SSAPMIVD 139 (551)
Q Consensus 108 ~~~~~---------------------------------~~~~~p~~~~~~~~~~~~~---------------~~~i~i~d 139 (551)
..... ...+.| ....+++-.+. ...+.-.|
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~--~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP--ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC--CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 22110 001111 11222222211 12566677
Q ss_pred cCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC---EEEEEecCceEEEEECCCCcEE
Q 008844 140 LSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD---LVYVGNSKGEILVIDHKSNQIR 208 (551)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l~~g~~dg~i~i~d~~~~~~~ 208 (551)
+++++............-. ........-+.+..+|+ .++.+..+|.++++|..+++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD-----------~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWD-----------YDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCcc-----------ccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 7777765543332221110 00111233334445665 7889999999999999999885
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.00063 Score=59.35 Aligned_cols=140 Identities=9% Similarity=0.022 Sum_probs=83.8
Q ss_pred EEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCC
Q 008844 187 LVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEP 266 (551)
Q Consensus 187 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (551)
.+...+.+|.|.-++++..+....-...+... ...-.-+..|++|+.+|.|.+|...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n-------------------- 88 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWN-------------------- 88 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCC--------------------
Confidence 35556678888888877655422221122222 1112235679999999999999811
Q ss_pred Ccceeeeeccceeeeeecccccccceee--e-eeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC-CceEE
Q 008844 267 NGIEKMKMVGSKCLALFREFQDSITKMH--W-KAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK-EALID 341 (551)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~-~~v~~ 341 (551)
.+..|...+.... + ..+.--.++.+..++.. +|.|+.|++. ++.+.....|. .++..
T Consensus 89 ---------------~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~---dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 89 ---------------LEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQ---DGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ---------------ccchHHHhhhcccccceeccccccccceeEEecc---CCceeeeccccCceeeeeccccCCCcce
Confidence 1111111111000 0 01122234557888888 9999999999 88888888887 56666
Q ss_pred EEEecCCCeEEEE--cCCCcEEEEecCC
Q 008844 342 LAWHPVHPIIVSV--SLTGWVYIWAKDY 367 (551)
Q Consensus 342 l~~sp~~~~l~s~--s~dg~i~iW~~~~ 367 (551)
+..+..+.+|+++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666666666666 6677777777653
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.22 E-value=0.035 Score=43.15 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=71.4
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 26 MKCIAFNR---RG-TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 26 V~~l~fs~---dg-~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
|++|++.. +| +.|++|+.|..|+||+-+ ..+..+.. ...|++|+-... ..++.+-.+|+|-+|+- ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE---TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec---ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cce
Confidence 56666654 33 589999999999999754 56666654 578888888765 56888889999999974 556
Q ss_pred EEEEEcCCCeeEEEEec-CCCCCcEEEEeeCCCCc
Q 008844 102 ITRIVLQQTPLQARLHP-GSSTPSLCLACPLSSAP 135 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~i 135 (551)
++.++....+.++.+.. ++....-++++-.+|.+
T Consensus 74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 66776666666665543 33334456666666654
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.18 E-value=0.0011 Score=40.43 Aligned_cols=38 Identities=29% Similarity=0.571 Sum_probs=31.8
Q ss_pred ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 56 GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 56 ~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
.....+..| ...|.++.|.+.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGH--TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEec--CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344555544 78999999999999999999999999996
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.17 E-value=0.031 Score=54.37 Aligned_cols=202 Identities=18% Similarity=0.174 Sum_probs=99.9
Q ss_pred EcCCCCEEEEEeC------CCeEEEEeccCCceeeEeecccc-cccEEEEEecCCCCEEEEEe-----------------
Q 008844 31 FNRRGTLLAAGCS------DGSCVIWDFETRGIAKELRDKEC-VAAITSVCWSKYGHRILVSA----------------- 86 (551)
Q Consensus 31 fs~dg~~latg~~------dg~I~iwd~~~~~~~~~~~~~~h-~~~V~~l~~s~~g~~l~s~s----------------- 86 (551)
--|+|++++++-. -|-+.+.|-++..+......... ..--..+-|.|..+.++|+.
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 3478988887532 25688888888777666654211 22345667788778888764
Q ss_pred ---CCCCEEEEEcCCCeEEEEEEcCC---CeeEEEEecCCCCCcEEEEeeCCCCcEEEEc-CCCceeeeccccCCCC---
Q 008844 87 ---ADKSLTLWDVLKGEKITRIVLQQ---TPLQARLHPGSSTPSLCLACPLSSAPMIVDL-STGSTSILPIAVPDVA--- 156 (551)
Q Consensus 87 ---~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~~~~--- 156 (551)
...++.+||+.+.+.++++.... .+..++|..+.....-++.+...++|..|-- ..+......+......
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 24679999999999999999875 3667888887776777788888887777655 4443221111100000
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCCCc---EEEeeeccC---------------cc
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQ---IRALVPVSG---------------AA 217 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~---~~~~~~~~~---------------~~ 217 (551)
....+. -.......+.-|+.+.+|.|.++|++.+ ..|.|+.||+.... ++..+..+. .+
T Consensus 297 ~~~lp~--ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 297 GWILPE--MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG 374 (461)
T ss_dssp SS---G--GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred cccccc--cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence 000000 0000011122688999999999998877 48999999997643 333332221 11
Q ss_pred ceEEEEEeeCCCEEEEe
Q 008844 218 VIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~ 234 (551)
...-|..|.||+.|.+.
T Consensus 375 gPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ----EEE-TTSSEEEEE
T ss_pred CCCeEEEccCCeEEEEE
Confidence 23556777788777655
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0076 Score=63.99 Aligned_cols=76 Identities=18% Similarity=0.343 Sum_probs=60.1
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT 110 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 110 (551)
.+..++.|+..|.|-..|+.+. +-....+....++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567889999999999888643 221222223368999999999999999999999999999999998888876654
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.15 E-value=0.069 Score=54.02 Aligned_cols=163 Identities=13% Similarity=0.105 Sum_probs=92.5
Q ss_pred CceEEEEeeCCCEEEEEe-cC----ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC-----------
Q 008844 175 TPTAACFNKYGDLVYVGN-SK----GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR----------- 238 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~-~d----g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg----------- 238 (551)
.+..++++|+|++++.+- .. ..|+++|+.+++.+...- .......+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 455788999999988763 33 359999999998765431 122223499999988776665433
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCc-c
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGE-H 317 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~d-g 317 (551)
.|+.|.+-.+. ......+........ +..+..++|+++|+.....+.+ .
T Consensus 203 ~v~~~~~gt~~---------------------------~~d~lvfe~~~~~~~---~~~~~~s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 203 QVYRHKLGTPQ---------------------------SEDELVFEEPDEPFW---FVSVSRSKDGRYLFISSSSGTSES 252 (414)
T ss_dssp EEEEEETTS-G---------------------------GG-EEEEC-TTCTTS---EEEEEE-TTSSEEEEEEESSSSEE
T ss_pred EEEEEECCCCh---------------------------HhCeeEEeecCCCcE---EEEEEecCcccEEEEEEEccccCC
Confidence 25666522111 111223333222221 1267889999999877665445 6
Q ss_pred eEEEEecC-C----ceeEEEecCCCceEEEEEecCCCeEEEEcC---CCcEEEEecCCCC
Q 008844 318 KIYIWDRA-G----YLVKILEGPKEALIDLAWHPVHPIIVSVSL---TGWVYIWAKDYTE 369 (551)
Q Consensus 318 ~I~iwd~~-~----~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~---dg~i~iW~~~~~~ 369 (551)
.|++.++. + .....+..+...+....-+..+.+++.... .+.|...++....
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 78888887 4 234444434444444333334444444332 5667777777765
No 384
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.08 E-value=0.37 Score=47.86 Aligned_cols=148 Identities=18% Similarity=0.232 Sum_probs=94.1
Q ss_pred CCEEEEEeCCCCEEEEEcCCCe-----EEEEEEcCCCeeEEEEecC-CCCCcEEEEeeCCCCcEEEEcCCCc-------e
Q 008844 79 GHRILVSAADKSLTLWDVLKGE-----KITRIVLQQTPLQARLHPG-SSTPSLCLACPLSSAPMIVDLSTGS-------T 145 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~i~i~d~~~~~-------~ 145 (551)
...|++|+..|.++||+...+. .+.......++..+..-.- .......++.-.-..+.+|.+.... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 4689999999999999975433 5666677778877765542 2224456666777788888773211 1
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-----CEEEEEecCceEEEEECCCCcEEEeeeccCccceE
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-----DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIK 220 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-----~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~ 220 (551)
..+..... ... ......+++-|-| .+|.+=+.||.+.+|+-........++ .---..
T Consensus 117 ~~L~~~ye-------------h~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPg 178 (418)
T PF14727_consen 117 YQLELIYE-------------HSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPG 178 (418)
T ss_pred EEEEEEEE-------------Eec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCc
Confidence 11111000 000 1133344443332 577888999999999987766544442 222223
Q ss_pred EEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 221 NIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 221 ~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.++|.+.-..|++++.+..|.-|.
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYK 202 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEec
Confidence 478888888999999999999997
No 385
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.06 E-value=0.17 Score=44.68 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=39.9
Q ss_pred eeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEec
Q 008844 297 APCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHP 346 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp 346 (551)
.+++..+|++.++.-. .++|+.+|.. |+.+..+.-+...|++++|--
T Consensus 216 Gm~ID~eG~L~Va~~n---g~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFN---GGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEec---CcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 4566778887777776 7899999999 999999999999999999943
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.011 Score=58.03 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=97.6
Q ss_pred eCCCEE-EEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCC-------EEEEeeCCCeEEEEeCcCCccccch
Q 008844 183 KYGDLV-YVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQ-------YLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 183 ~~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~-------~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.+.++| ..+.....|+-.|+..|+++..+.. +. .|+-+.+.|+.+ .-++|-.|..|.-||.+.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~-~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv------- 413 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKF-ED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV------- 413 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeec-cC-CcceeeccCCcchhcccccccEEeecCCceEEecccc-------
Confidence 344444 4455667899999999999999863 32 377777877643 123455678888898321
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEe
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
.+...+.....+ ...+...++|.+-..+| +||+|+. +|.|++||.- -..-..|.
T Consensus 414 --------------------~~~~kl~~~q~k-qy~~k~nFsc~aTT~sG-~IvvgS~---~GdIRLYdri~~~AKTAlP 468 (644)
T KOG2395|consen 414 --------------------QGKNKLAVVQSK-QYSTKNNFSCFATTESG-YIVVGSL---KGDIRLYDRIGRRAKTALP 468 (644)
T ss_pred --------------------cCcceeeeeecc-ccccccccceeeecCCc-eEEEeec---CCcEEeehhhhhhhhhccc
Confidence 112122222222 23344445455555554 7888888 8999999987 44445677
Q ss_pred cCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 334 GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 334 ~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+-..+|..|..+.+|.+|+..+ +..+.+-++.
T Consensus 469 gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 469 GLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 7888999999999999887776 4556555543
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.93 E-value=0.32 Score=44.57 Aligned_cols=197 Identities=15% Similarity=0.090 Sum_probs=117.6
Q ss_pred ceeecccccc--eEEEEEEcCCCCEEEEEeCCC--eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCC
Q 008844 15 EVIEEYLEHG--VMKCIAFNRRGTLLAAGCSDG--SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKS 90 (551)
Q Consensus 15 ~~l~~~~h~~--~V~~l~fs~dg~~latg~~dg--~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~ 90 (551)
+++..+.|.. -...+.|..+|.++-+.+.-| .|+.+|+.+++......... ..---.|+... +++....=.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~-d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILG-DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEET-TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEEC-CEEEEEEecCCe
Confidence 5666677763 345688877888887777666 69999999998876654321 11112233332 233333335889
Q ss_pred EEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeee-ccccCCCCCCCCCCCCCCCCC
Q 008844 91 LTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL-PIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 169 (551)
..+||..+.+.+.++........++. ++ ..++.+..+..++++|..+-..... .+.....
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt~--dg---~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~-------------- 172 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLTS--DG---KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR-------------- 172 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEEE--CS---SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE--------------
T ss_pred EEEEccccceEEEEEecCCcceEEEc--CC---CEEEEECCccceEEECCcccceEEEEEEEECCE--------------
Confidence 99999999999999988877777773 22 2577777788899999877654321 1111100
Q ss_pred CCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc--------------CccceEEEEEeeCCCEEEEee
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS--------------GAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--------------~~~~i~~l~~s~~g~~l~t~s 235 (551)
.-..++-+.|- +|...|=--....|...|..+|++...+... .....+.|++.|....|++.+
T Consensus 173 --pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 173 --PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp --E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred --ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 01145666665 5655555556778999999999997766320 135689999998766554443
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.91 E-value=0.36 Score=44.89 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=85.6
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEE-ECCCCcEE-EeeeccCc-cceEEEEEeeCCCEEEEee---CCCeEEEEeCcCC
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVI-DHKSNQIR-ALVPVSGA-AVIKNIVFSRNGQYLLTNS---NDRTIRIYDNLLP 248 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~-d~~~~~~~-~~~~~~~~-~~i~~l~~s~~g~~l~t~s---~Dg~i~iwd~~~~ 248 (551)
.++.-.|++++...++...+....++ +..++... ..+..... ..|+.+.+||||..++... .++.|.+--+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 44556677887666666655555555 33333331 12211222 2899999999999877665 3566766653322
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEE-EecCCc
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYI-WDRAGY 327 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~i-wd~~~~ 327 (551)
..+....+ ...+.........+. .+.|.+++.+++.+... +..+.. ....|.
T Consensus 147 ~~g~~~~l--------------------~~~~~~~~~~~~~v~-----~v~W~~~~~L~V~~~~~--~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 147 GDGVPRRL--------------------TGPRRVAPPLLSDVT-----DVAWSDDSTLVVLGRSA--GGPVVRLVSVDGG 199 (253)
T ss_pred CCCCccee--------------------ccceEecccccCcce-----eeeecCCCEEEEEeCCC--CCceeEEEEccCC
Confidence 21100000 011112222223344 88999999988877763 233333 444454
Q ss_pred eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceee
Q 008844 328 LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAF 374 (551)
Q Consensus 328 ~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~ 374 (551)
....+..-...+..++.......++....++.++ ...+..|...
T Consensus 200 ~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~~~~~---~~~~~~W~~v 243 (253)
T PF10647_consen 200 PSTPLPSVNLGVPVVAVAASPSTVYVTDDGGVLQ---SRSGASWREV 243 (253)
T ss_pred cccccCCCCCCcceEEeeCCCcEEEEECCCcEEE---CCCCCcceEc
Confidence 4444422233333344433444444444343322 5555666543
No 389
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.86 E-value=0.51 Score=45.92 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCCEEEEeeccCCcceEEEEecC-CceeE----EEecCCCceEEEEEecCCCeEEEEcCCCcEE
Q 008844 303 DGEWVIAGSASKGEHKIYIWDRA-GYLVK----ILEGPKEALIDLAWHPVHPIIVSVSLTGWVY 361 (551)
Q Consensus 303 dg~~l~~gs~~~~dg~I~iwd~~-~~~~~----~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~ 361 (551)
.|.++++.-. .+.|+...+. +..+. .+......+..|++.|||.++++.+.+|.|+
T Consensus 270 ~g~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYG---GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETT---TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCC---CCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4556665554 5778877776 32221 2223445799999999999888888888875
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.02 Score=60.98 Aligned_cols=72 Identities=28% Similarity=0.564 Sum_probs=56.0
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeeccccc-ccEEEEEecCCCCEEEEEeCCCCEEEEEc
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECV-AAITSVCWSKYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~s~dg~i~vwd~ 96 (551)
.++|+|++|+.+|++++.|-.+|.|.+||+..+..++.+..++|. ..|..+.|..++..++++...|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 489999999999999999999999999999999999988766322 23334445556667888877775 5654
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.71 E-value=0.2 Score=47.42 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=79.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
+.+..+..+++|++++++..-....-|+.-.......-+.. ...|.+|.|.|++.+.+.+ ..|.|+.=+... ...
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~--~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~ 219 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS--SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGE 219 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S--SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc--cceehhceecCCCCEEEEe-CCcEEEEccCCC--Ccc
Confidence 66888889999999999876555567775433233333333 6899999999998765544 677777665211 111
Q ss_pred EEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee
Q 008844 104 RIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK 183 (551)
Q Consensus 104 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 183 (551)
.+..+ +.|. ....+.+..++|.+
T Consensus 220 ~w~~~-------~~~~--------------------------------------------------~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 220 TWSEP-------IIPI--------------------------------------------------KTNGYGILDLAYRP 242 (302)
T ss_dssp EE----------B-TT--------------------------------------------------SS--S-EEEEEESS
T ss_pred ccccc-------cCCc--------------------------------------------------ccCceeeEEEEecC
Confidence 11110 0000 01112578889998
Q ss_pred CCCEEEEEecCceEEEEECCCCcEEEeeec--cCccceEEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 184 YGDLVYVGNSKGEILVIDHKSNQIRALVPV--SGAAVIKNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 184 ~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
++...++|+ .|. .+.....++.-...+. .-...++.|.|.+..+-++.| .+|.|--|
T Consensus 243 ~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 243 PNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp SS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 877666655 443 3455566665444432 224568889998765555555 78887655
No 392
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.68 E-value=0.59 Score=44.13 Aligned_cols=247 Identities=15% Similarity=0.122 Sum_probs=124.0
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCC
Q 008844 78 YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVAN 157 (551)
Q Consensus 78 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (551)
.++.|+.|+.+| |.++++........+.....+..+...|.-. .+ ..-.++.+.++++..-.............
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~---~l-lvLsd~~l~~~~L~~l~~~~~~~~~~~~~- 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELN---LL-LVLSDGQLYVYDLDSLEPVSTSAPLAFPK- 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccC---EE-EEEcCCccEEEEchhhccccccccccccc-
Confidence 477899998888 8999984443333333334477777777532 33 33345999999987755433111000000
Q ss_pred CCCCCCCCCCCCCCCCCCceEEE--EeeCCCEEEEEecCceEEEEECCCC-----cEEEeeeccCccceEEEEEeeCCCE
Q 008844 158 GIAPSSRNKYSDGTPPFTPTAAC--FNKYGDLVYVGNSKGEILVIDHKSN-----QIRALVPVSGAAVIKNIVFSRNGQY 230 (551)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~~--~s~~g~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~l~~s~~g~~ 230 (551)
.............+..++ -...+...++......|.+|..... +....+ .-...+..++|. +..
T Consensus 80 -----~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 80 -----SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNK 150 (275)
T ss_pred -----cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEe--CCE
Confidence 000000000011333333 1223333334444558888877653 344444 445788999998 557
Q ss_pred EEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccce-eeeeecccccccceeeeeeeEEcCCCCEEEE
Q 008844 231 LLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSK-CLALFREFQDSITKMHWKAPCFSGDGEWVIA 309 (551)
Q Consensus 231 l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~ 309 (551)
|+.+..++ ..+.|+.... ...+..... .. ..........++ .+.--+++.+|++
T Consensus 151 i~v~~~~~-f~~idl~~~~---~~~l~~~~~---------------~~~~~~~~~~~~~~~------~~~~~~~~e~Ll~ 205 (275)
T PF00780_consen 151 ICVGTSKG-FYLIDLNTGS---PSELLDPSD---------------SSSSFKSRNSSSKPL------GIFQLSDNEFLLC 205 (275)
T ss_pred EEEEeCCc-eEEEecCCCC---ceEEeCccC---------------CcchhhhcccCCCce------EEEEeCCceEEEE
Confidence 77776544 6677722111 000000000 00 000000000111 2222345677775
Q ss_pred eeccCCcceEEEEecCCceeE--EEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCccee
Q 008844 310 GSASKGEHKIYIWDRAGYLVK--ILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSA 373 (551)
Q Consensus 310 gs~~~~dg~I~iwd~~~~~~~--~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~ 373 (551)
-. ..-.+.+..|+..+ .+.= ...+.++++ ..++|+..+. +.|.||++.+++....
T Consensus 206 ~~-----~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 206 YD-----NIGVFVNKNGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred ec-----ceEEEEcCCCCcCcccEEEc-CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence 43 34445566666554 2322 235566666 4568888875 4599999998865443
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.65 E-value=0.0074 Score=39.05 Aligned_cols=31 Identities=19% Similarity=0.524 Sum_probs=28.5
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFE 53 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~ 53 (551)
...|.+++|+|...+||.|..+|.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999983
No 394
>PHA02713 hypothetical protein; Provisional
Probab=96.64 E-value=0.23 Score=52.06 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=40.1
Q ss_pred CCCEEEEeeccCCc---ceEEEEecCC-cee---EEEecCCCceEEEEEecCCCeEEEEcCCC--cEEEEecCCCCccee
Q 008844 303 DGEWVIAGSASKGE---HKIYIWDRAG-YLV---KILEGPKEALIDLAWHPVHPIIVSVSLTG--WVYIWAKDYTENWSA 373 (551)
Q Consensus 303 dg~~l~~gs~~~~d---g~I~iwd~~~-~~~---~~l~~h~~~v~~l~~sp~~~~l~s~s~dg--~i~iW~~~~~~~~~~ 373 (551)
+|+..+.|+.+... ..+..||... ... ..+..+......+.+ ++.+.++||.+| .+..||+.+ ..|..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~-~~W~~ 539 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT-YEWNH 539 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc-ccccc
Confidence 45655666542101 2467788763 222 233322223333333 778888998888 677777765 45776
Q ss_pred ecCC
Q 008844 374 FAPD 377 (551)
Q Consensus 374 ~spd 377 (551)
++|.
T Consensus 540 ~~~~ 543 (557)
T PHA02713 540 ICHQ 543 (557)
T ss_pred hhhh
Confidence 6664
No 395
>PHA02713 hypothetical protein; Provisional
Probab=96.63 E-value=0.092 Score=55.02 Aligned_cols=60 Identities=8% Similarity=0.156 Sum_probs=34.1
Q ss_pred CCCEEEEEecC------ceEEEEECCC-CcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC--eEEEEe
Q 008844 184 YGDLVYVGNSK------GEILVIDHKS-NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR--TIRIYD 244 (551)
Q Consensus 184 ~g~~l~~g~~d------g~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg--~i~iwd 244 (551)
+|++.++|+.+ ..+..||..+ .+-.............+++. -+|+..++|+.++ .+..||
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcC
Confidence 46666777654 2467899887 44332221122222222222 2778888998888 566666
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.61 E-value=0.12 Score=48.07 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=89.5
Q ss_pred CceEEEEeeCCCEEEEEe---cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccc
Q 008844 175 TPTAACFNKYGDLVYVGN---SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~ 251 (551)
.+.+.+++++|..++... ....|+++... ....... ....++...|++++...+....+...+++......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g-- 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG-- 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCC--
Confidence 678899999998776655 33445555443 3322221 23478888999998777776666666766300000
Q ss_pred cchhhhhhhccCCCCCcceeeeeccceeeee-ecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC----C
Q 008844 252 GLEALVDIEKGIAEPNGIEKMKMVGSKCLAL-FREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA----G 326 (551)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~----~ 326 (551)
....... .......|. .+.+||||..+|......+++.|+|--+. +
T Consensus 99 ------------------------~~~~~~v~~~~~~~~I~-----~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 99 ------------------------TGEPVEVDWPGLRGRIT-----ALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG 149 (253)
T ss_pred ------------------------cceeEEecccccCCceE-----EEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence 0000110 111111344 89999999999988855446888887654 3
Q ss_pred ------ceeEEEecCCCceEEEEEecCCCeEEEEcC
Q 008844 327 ------YLVKILEGPKEALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 327 ------~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~ 356 (551)
..+.........+++++|.+++.+++.+..
T Consensus 150 ~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 150 VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred CcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 122222233467999999999987777765
No 397
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.46 Score=45.28 Aligned_cols=193 Identities=16% Similarity=0.110 Sum_probs=110.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeeccc---ccccEEEEEecCCCCEEEEEeC---------CCCE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKE---CVAAITSVCWSKYGHRILVSAA---------DKSL 91 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~s~---------dg~i 91 (551)
+.+.++..-..+..|+++. .-+.+++.+++.....+.... -....+.+...|+|.+.++... -..-
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 66 GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 3444444433444455442 346777776666533332111 1245567888899886665433 1112
Q ss_pred EEEEcC-CCeEEEEEEc-CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 92 TLWDVL-KGEKITRIVL-QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 92 ~vwd~~-~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
.||-+. .+..+..+.. -.....++|+|+++ .++++=+..+.+.-|++....... ...+.....
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~--tly~aDT~~~~i~r~~~d~~~g~~-------------~~~~~~~~~ 208 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK--TLYVADTPANRIHRYDLDPATGPI-------------GGRRGFVDF 208 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCC--EEEEEeCCCCeEEEEecCcccCcc-------------CCcceEEEc
Confidence 455555 5555555554 33456889999875 356666666778877776311000 000001111
Q ss_pred CCCCCCceEEEEeeCCCEEEEEecCc-eEEEEECCCCcEEEeeeccCccceEEEEEe-eCCCEEEEee
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNSKG-EILVIDHKSNQIRALVPVSGAAVIKNIVFS-RNGQYLLTNS 235 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~t~s 235 (551)
...+...-.++...+|.+.+++...| .|.+|+.. ++.+..+..+. ..+++++|- ++.+.|++.+
T Consensus 209 ~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 209 DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEe
Confidence 11233667788899998776666555 89999999 88888776444 667778885 3445554443
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.51 E-value=0.66 Score=42.58 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=74.7
Q ss_pred eeEeecccccccEEEEEecCCCCEEEEEeCCC--CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCc
Q 008844 58 AKELRDKECVAAITSVCWSKYGHRILVSAADK--SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAP 135 (551)
Q Consensus 58 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i 135 (551)
+.++. |....-...+.|..+|.++-+.+.-| .|+.+|+.+|+.+.....+...+.
T Consensus 36 v~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg---------------------- 92 (264)
T PF05096_consen 36 VETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG---------------------- 92 (264)
T ss_dssp EEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E----------------------
T ss_pred EEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc----------------------
Confidence 34433 43455667888977888888887755 799999999998887776654221
Q ss_pred EEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccC
Q 008844 136 MIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG 215 (551)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 215 (551)
-.++.. ++++....-.++...+||..+.+.+..+....
T Consensus 93 -----------------------------------------EGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~ 130 (264)
T PF05096_consen 93 -----------------------------------------EGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG 130 (264)
T ss_dssp -----------------------------------------EEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SS
T ss_pred -----------------------------------------eeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCC
Confidence 011111 22344445568899999999999988885443
Q ss_pred ccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 216 AAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 216 ~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.=..++ .++..|+.+.....|+++|
T Consensus 131 --EGWGLt--~dg~~Li~SDGS~~L~~~d 155 (264)
T PF05096_consen 131 --EGWGLT--SDGKRLIMSDGSSRLYFLD 155 (264)
T ss_dssp --S--EEE--ECSSCEEEE-SSSEEEEE-
T ss_pred --cceEEE--cCCCEEEEECCccceEEEC
Confidence 345555 5677788777777888888
No 399
>PRK10115 protease 2; Provisional
Probab=96.47 E-value=1.7 Score=46.90 Aligned_cols=73 Identities=5% Similarity=-0.034 Sum_probs=45.0
Q ss_pred ccEEEEEecCCCCEEEEEeC-----CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCC-----CCcEE
Q 008844 68 AAITSVCWSKYGHRILVSAA-----DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-----SAPMI 137 (551)
Q Consensus 68 ~~V~~l~~s~~g~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----~~i~i 137 (551)
-.+..+.|+|+|++|+.+.. ...|.+.|+.+|..+....... ...+.|.+++.. ++++.... ..++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~~~~~w~~D~~~--~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-EPSFVWANDSWT--FYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-ceEEEEeeCCCE--EEEEEecCCCCCCCEEEE
Confidence 45778899999998887643 2358888998886432221111 245888887642 44433322 34666
Q ss_pred EEcCCC
Q 008844 138 VDLSTG 143 (551)
Q Consensus 138 ~d~~~~ 143 (551)
+++.++
T Consensus 204 h~lgt~ 209 (686)
T PRK10115 204 HTIGTP 209 (686)
T ss_pred EECCCC
Confidence 777766
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.42 E-value=0.25 Score=49.79 Aligned_cols=161 Identities=12% Similarity=0.207 Sum_probs=95.2
Q ss_pred cccEEEEEecCCCCEE-EEEe--CCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCc-EEEEeeCCCCcEEEEcCC
Q 008844 67 VAAITSVCWSKYGHRI-LVSA--ADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPS-LCLACPLSSAPMIVDLST 142 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l-~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~i~i~d~~~ 142 (551)
-.+|..++|. ||+.+ ++.- .+|.+++=| ...+.. -..+.++.|.|-..... .+++......+.+|.+..
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGq---FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQ---FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeec---cceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4589999998 55544 4432 133333221 122222 24577889998754333 788999999999999863
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEE
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNI 222 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l 222 (551)
.....-.+........ ...-+.-...+.|+|....|++-+....-.+++++.............+.|.|.
T Consensus 92 s~~e~~K~l~sQtcEi----------~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCA 161 (671)
T PF15390_consen 92 STTERNKLLMSQTCEI----------REPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCA 161 (671)
T ss_pred Cccccccceeeeeeec----------cCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEE
Confidence 3221111110000000 000001234678999998888877666556667665444333333778999999
Q ss_pred EEeeCCCEEEEeeC-CCeEEEEe
Q 008844 223 VFSRNGQYLLTNSN-DRTIRIYD 244 (551)
Q Consensus 223 ~~s~~g~~l~t~s~-Dg~i~iwd 244 (551)
+|.+||+.|+++-. .=.-+|||
T Consensus 162 CWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 162 CWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred EecCcCCEEEEEeCCeEEEEEec
Confidence 99999998776633 33467898
No 401
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.77 Score=42.22 Aligned_cols=211 Identities=12% Similarity=0.068 Sum_probs=115.7
Q ss_pred ccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEE
Q 008844 5 IIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILV 84 (551)
Q Consensus 5 lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s 84 (551)
+|++..+..+..+....-.+-+..+.|+. ++...+..+.-++|.|+.+......+..-...+--.++.. .|+++..
T Consensus 68 itn~~~~t~~~l~~~i~~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYV 143 (370)
T COG5276 68 ITNVSLQTHDVLLSVINARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYV 143 (370)
T ss_pred ccCcccccCcceEEEEehhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEE
Confidence 45554443334443333345566677764 4666677777799999987665444432211122334444 4889999
Q ss_pred EeCCCCEEEEEcCCCe---EEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 85 SAADKSLTLWDVLKGE---KITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 85 ~s~dg~i~vwd~~~~~---~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
+..|.-+.+.|+.+.. ...++..... ...+..+- .+...+..++.+.+.|+.......+.-...-.
T Consensus 144 adlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISG-----n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g----- 213 (370)
T COG5276 144 ADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISG-----NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG----- 213 (370)
T ss_pred eeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEec-----CeEEEEEeCCCeEEEEccCCCCCeEEEEEecC-----
Confidence 9877778888886543 2333333322 12333332 25677778999999999887654432222110
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEE-EEeeCCCEEEEeeCCCe
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNI-VFSRNGQYLLTNSNDRT 239 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l-~~s~~g~~l~t~s~Dg~ 239 (551)
..+.++..+++-.+++. .+--+.+.|..+.+....+-......+.++ .+.-.+++......+.-
T Consensus 214 -------------~g~~sv~vsdnr~y~vv--y~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g 278 (370)
T COG5276 214 -------------PGTYSVSVSDNRAYLVV--YDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKG 278 (370)
T ss_pred -------------CceEEEEecCCeeEEEE--cccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccC
Confidence 03455555555444443 344577788776664333321222222222 23334566666666666
Q ss_pred EEEEe
Q 008844 240 IRIYD 244 (551)
Q Consensus 240 i~iwd 244 (551)
+-+-|
T Consensus 279 l~~id 283 (370)
T COG5276 279 LPIID 283 (370)
T ss_pred ceeEe
Confidence 66666
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.40 E-value=0.011 Score=38.22 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 336 KEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 336 ~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
...|..++|+|...+||.+..+|.|.|+.++....|
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw 46 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIW 46 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCcc
Confidence 356999999999999999999999999999554444
No 403
>PRK10115 protease 2; Provisional
Probab=96.29 E-value=2.1 Score=46.15 Aligned_cols=72 Identities=15% Similarity=0.096 Sum_probs=49.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC------CCEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSD-----GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD------KSLT 92 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d------g~i~ 92 (551)
-.+..+.+||+|++||.+... ..|++.|+.++..+...... .. ..++|++|++.|+....+ ..|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VE--PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cc--eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 346778899999999876432 35889999888644332211 11 569999998877665442 3577
Q ss_pred EEEcCCC
Q 008844 93 LWDVLKG 99 (551)
Q Consensus 93 vwd~~~~ 99 (551)
.|++.++
T Consensus 203 ~h~lgt~ 209 (686)
T PRK10115 203 RHTIGTP 209 (686)
T ss_pred EEECCCC
Confidence 7788777
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.28 E-value=0.45 Score=49.89 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=38.4
Q ss_pred cCCCCEEEEEeCCC------eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC------CEEEEEcCCC
Q 008844 32 NRRGTLLAAGCSDG------SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK------SLTLWDVLKG 99 (551)
Q Consensus 32 s~dg~~latg~~dg------~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg------~i~vwd~~~~ 99 (551)
+..+.+++.|+..+ .+..||..++.......-. +...-.+++.. ++...++||.|. ++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33466778887773 5788888877544333222 12334445554 456777888772 3445555544
Q ss_pred e
Q 008844 100 E 100 (551)
Q Consensus 100 ~ 100 (551)
+
T Consensus 360 ~ 360 (571)
T KOG4441|consen 360 Q 360 (571)
T ss_pred c
Confidence 4
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.93 Score=41.81 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=104.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
..|+++.|+|+.+.|++......-.||=...|.+++++...+ -+..-.|.|..+|.+.++--.++.+.++.+..+..+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 459999999999999888888888888777899999887543 3455678888888888877778899888876654332
Q ss_pred EE-----Ec------CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 104 RI-----VL------QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 104 ~~-----~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
.+ .. ...--+++|.|... .++.+-...-+.||.+...... +........ ...+ .--
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~---~l~~aKEr~P~~I~~~~~~~~~-l~~~~~~~~----~~~~-----~~f 231 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDH---RLFVAKERNPIGIFEVTQSPSS-LSVHASLDP----TADR-----DLF 231 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCc---eEEEEEccCCcEEEEEecCCcc-cccccccCc----cccc-----ceE
Confidence 22 21 22344677777643 4555555566666655532210 000000000 0000 000
Q ss_pred CCCceEEEEeeCC-CEEEEEecCceEEEEECCCC
Q 008844 173 PFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSN 205 (551)
Q Consensus 173 ~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~ 205 (551)
-..+.++.|++.. .+++.+..++.+.-.|....
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 1167788888654 56666677777777776544
No 406
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.10 E-value=1.3 Score=43.90 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=35.2
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV 213 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 213 (551)
..+.+++.+|.+++.++...-|.|.++|+.++..+..++.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 4678999999999999998889999999999988877753
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.092 Score=56.53 Aligned_cols=146 Identities=10% Similarity=0.089 Sum_probs=87.9
Q ss_pred cccEEEEEecCCCCEEEEEeC--CCCEEEEEcCCCeEEE--------E--EEcC--CCeeEEEEecCCCCCcEEEEeeCC
Q 008844 67 VAAITSVCWSKYGHRILVSAA--DKSLTLWDVLKGEKIT--------R--IVLQ--QTPLQARLHPGSSTPSLCLACPLS 132 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~--------~--~~~~--~~~~~~~~~p~~~~~~~~~~~~~~ 132 (551)
.-+|..+...+|+...++... +-.|..||+++-.... . .... .-...+.|.|.- +...+++..+
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v--p~n~av~l~d 177 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV--PLNSAVDLSD 177 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc--cchhhhhccc
Confidence 345666666677765554433 4478889986543211 1 1111 124456677643 3456677777
Q ss_pred CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCc--EEEe
Q 008844 133 SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQ--IRAL 210 (551)
Q Consensus 133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~--~~~~ 210 (551)
..|.+..+.......... ......+|++|+|.|+.+++|-..|++.-|-..-.. .+..
T Consensus 178 lsl~V~~~~~~~~~v~s~--------------------p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~ 237 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTSF--------------------PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE 237 (1405)
T ss_pred cchhhhhhhhhhhhhccc--------------------CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccC
Confidence 777776654433221110 111178999999999999999999999988754331 1222
Q ss_pred eeccCccceEEEEEeeCCCEEEEe
Q 008844 211 VPVSGAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 211 ~~~~~~~~i~~l~~s~~g~~l~t~ 234 (551)
.+......|.+|+|-....+|++-
T Consensus 238 Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 238 PPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred CCcCCCcceeEEEEecceeEEEEe
Confidence 222235789999998777776654
No 408
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.98 E-value=1.8 Score=46.89 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=50.3
Q ss_pred ccceEEEEEEcCCC------CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC---CC------CEEEEEe
Q 008844 22 EHGVMKCIAFNRRG------TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK---YG------HRILVSA 86 (551)
Q Consensus 22 h~~~V~~l~fs~dg------~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~---~g------~~l~s~s 86 (551)
-...|.|+++.+++ ++++.|+.|+.++++.+.....+..+...+-..++.++.+-+ ++ -+|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 34679999998875 689999999999999998777777776555566666666643 22 2455665
Q ss_pred CCCCE
Q 008844 87 ADKSL 91 (551)
Q Consensus 87 ~dg~i 91 (551)
.+|.+
T Consensus 661 ~NGvl 665 (1205)
T KOG1898|consen 661 RNGVL 665 (1205)
T ss_pred cccEE
Confidence 56644
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.94 E-value=1 Score=40.03 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=42.3
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR 226 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~ 226 (551)
..-.+++...|++.++.-..|+|..+|..+|+.+..+..+ ...|++++|--
T Consensus 213 ~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 213 EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 3445666778998888888999999999999999888754 77899999963
No 410
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.90 E-value=0.44 Score=49.98 Aligned_cols=211 Identities=14% Similarity=0.090 Sum_probs=106.1
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC------CeEEEEeccCCceeeEeecccccccEEEEEe
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD------GSCVIWDFETRGIAKELRDKECVAAITSVCW 75 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d------g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~ 75 (551)
.+..+|+.++.....-.. .....-.++++. +|.+.++|+.+ .++..||..+++....-.-....... +++.
T Consensus 302 ~ve~yd~~~~~w~~~a~m-~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~ 378 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPM-PSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV 378 (571)
T ss_pred eeEEecCCcCcEeecCCC-CcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE
Confidence 355677776644322221 122223444443 45788888888 35788888877754422111001111 1111
Q ss_pred cCCCCEEEEEeCCCC-----EEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC------CcEEEEcCCCc
Q 008844 76 SKYGHRILVSAADKS-----LTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS------APMIVDLSTGS 144 (551)
Q Consensus 76 s~~g~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~------~i~i~d~~~~~ 144 (551)
-+|...++||.||. |-.||..+.+....-............. -...++++++.++ .+..||..++.
T Consensus 379 -l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 379 -LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred -ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 16778888888864 6677776654322221211222211111 1133566666443 45677777777
Q ss_pred eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc-----eEEEEECCCCcEEEeeeccCccce
Q 008844 145 TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG-----EILVIDHKSNQIRALVPVSGAAVI 219 (551)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~i 219 (551)
....+.-..... ... +-.-++.+.++|+.+| +|..||..+.+-...-.......-
T Consensus 456 W~~~~~M~~~R~------------------~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 456 WTLIAPMNTRRS------------------GFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred eeecCCcccccc------------------cce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 654322111100 111 2223567788888776 378899888776444321222222
Q ss_pred EEEEEeeCCCEEEEeeCCCe
Q 008844 220 KNIVFSRNGQYLLTNSNDRT 239 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~ 239 (551)
..++. -+++..++|+.||.
T Consensus 516 ~g~~~-~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 516 VGVVV-LGGKLYAVGGFDGN 534 (571)
T ss_pred ccEEE-ECCEEEEEecccCc
Confidence 22222 25667778877664
No 411
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.88 E-value=3.4 Score=44.85 Aligned_cols=207 Identities=15% Similarity=0.121 Sum_probs=115.9
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccc------cEEEEEecC----------------CCCEEEEEeCCCCEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVA------AITSVCWSK----------------YGHRILVSAADKSLT 92 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~------~V~~l~~s~----------------~g~~l~s~s~dg~i~ 92 (551)
+..|+.++.++.|.-.|..+|+.+-.+....... ....+++.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4567777888999999999999887775431111 112233321 244788888899999
Q ss_pred EEEcCCCeEEEEEEcCCCee-------------EEEEecCCCCCcEEEEeeC----------CCCcEEEEcCCCceeeec
Q 008844 93 LWDVLKGEKITRIVLQQTPL-------------QARLHPGSSTPSLCLACPL----------SSAPMIVDLSTGSTSILP 149 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~-------------~~~~~p~~~~~~~~~~~~~----------~~~i~i~d~~~~~~~~~~ 149 (551)
-.|..+|+.+..+.....+. ...-.|--. ...+++++. .|.|+-+|..+|+.....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999999988764322110 011111101 113444432 578999999999976544
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe------------------cCceEEEEECCCCcEEEee
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN------------------SKGEILVIDHKSNQIRALV 211 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~------------------~dg~i~i~d~~~~~~~~~~ 211 (551)
............ ...... ......=..+++++...+++.+. ..+.|.-.|..+++.+..+
T Consensus 353 ~~g~p~~~~~~~-~g~~~~-~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 353 DPGNPDPTAPPA-PGETYT-RNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred ecCCCCcccCCC-CCCEec-cCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 322111111000 000000 01111113445555555544432 2357888899999998777
Q ss_pred eccCc--------cceEEEEEee-CCC---EEEEeeCCCeEEEEe
Q 008844 212 PVSGA--------AVIKNIVFSR-NGQ---YLLTNSNDRTIRIYD 244 (551)
Q Consensus 212 ~~~~~--------~~i~~l~~s~-~g~---~l~t~s~Dg~i~iwd 244 (551)
+..|. ....-+.+.. +|+ .++.++.+|.+.++|
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlD 475 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLD 475 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEE
Confidence 64332 1111122322 553 788899999999999
No 412
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.81 E-value=1.6 Score=40.61 Aligned_cols=207 Identities=17% Similarity=0.165 Sum_probs=112.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEecc------CC-ceeeEeeccc---ccccEEEEEecCCCC------------EEE
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFE------TR-GIAKELRDKE---CVAAITSVCWSKYGH------------RIL 83 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~------~~-~~~~~~~~~~---h~~~V~~l~~s~~g~------------~l~ 83 (551)
-..|+|+|.+.+-++....+...+||.. .. .++-++.... .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999999888877778899999986 11 2233332110 134577777764322 357
Q ss_pred EEeCCCCEEEEEcCCCeE-----EEEEEc--CCCe-eEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCC
Q 008844 84 VSAADKSLTLWDVLKGEK-----ITRIVL--QQTP-LQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDV 155 (551)
Q Consensus 84 s~s~dg~i~vwd~~~~~~-----~~~~~~--~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 155 (551)
.++.||+|.-|...-+.. ...+.. ...+ ..+++.+......+.++--..++|-++|-.=..... +-...+.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~-~g~F~DP 183 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL-PGSFIDP 183 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC-CCCccCC
Confidence 778899999998533322 111111 1122 245555544445566666667777777654333211 1111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCc---------eEEEEeeCCCEEEEEecCceEEEEECCCCcEEEee-eccCccceEEEEEe
Q 008844 156 ANGIAPSSRNKYSDGTPPFTP---------TAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALV-PVSGAAVIKNIVFS 225 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i---------~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~l~~s 225 (551)
. ....-.++.| +-..-.++++.=+.|...|.|-+||+. +..++.+ ....-..-..|+..
T Consensus 184 ~----------iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 184 A----------LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred C----------CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeC
Confidence 0 0011111122 111112223333334456799999986 4455544 22233445667775
Q ss_pred e------CCCEEEEeeCCCeEEEEe
Q 008844 226 R------NGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 226 ~------~g~~l~t~s~Dg~i~iwd 244 (551)
| .|.+|+-.-.||+|..||
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYD 277 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEec
Confidence 5 466777777799999999
No 413
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.77 E-value=3.5 Score=44.34 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=27.4
Q ss_pred CceEEEEeeCC---CEEEEEecCceEEEEECCCCc
Q 008844 175 TPTAACFNKYG---DLVYVGNSKGEILVIDHKSNQ 206 (551)
Q Consensus 175 ~i~~~~~s~~g---~~l~~g~~dg~i~i~d~~~~~ 206 (551)
.|..+.|+|.+ .+|++-++|+++++||+....
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 78889999874 889999999999999997543
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.72 E-value=0.6 Score=46.26 Aligned_cols=154 Identities=11% Similarity=0.195 Sum_probs=80.6
Q ss_pred CceEEEEeeCCCEEEEEe-----------cCc-eEEEEECCC--CcE--EEeeeccCccceEEEEEeeCCCEEEEeeCCC
Q 008844 175 TPTAACFNKYGDLVYVGN-----------SKG-EILVIDHKS--NQI--RALVPVSGAAVIKNIVFSRNGQYLLTNSNDR 238 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~-----------~dg-~i~i~d~~~--~~~--~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg 238 (551)
.+..++|.++|+++++-. ..+ .|.+++-.. ++. ...+. ......+.|++.++| |++++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEecCC--EEEeCCCe
Confidence 678899999999776643 223 788886543 332 23332 334456889999988 44444554
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccc--ceeeeeeeEEcCCCCEEEEeeccC--
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSI--TKMHWKAPCFSGDGEWVIAGSASK-- 314 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~s~dg~~l~~gs~~~-- 314 (551)
.+++.+..... ..+ ......+..+.... .....+.++|.|||.+.++-+...
T Consensus 92 i~~~~d~~gdg---------------~ad---------~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 92 ILFLRDKDGDD---------------KAD---------GEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred EEEEeCCCCCC---------------CCC---------CccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 44444411000 000 00001111111110 011123789999998665444210
Q ss_pred --------------CcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEc
Q 008844 315 --------------GEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVS 355 (551)
Q Consensus 315 --------------~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s 355 (551)
..|.|.-++..+..+..+...-.....++|+|++.++++-.
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 01445555555444444443334567899999998877644
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=3.3 Score=43.36 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=39.2
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 104 (551)
-.|+||++. |+++..+.-. ...+..+.|+.+. .|+....+|++.||++. |..+..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~--~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~ 118 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWK--HGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIES 118 (829)
T ss_pred eeEEEEecc-ccchHHHHhc--CCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcc
Confidence 458888876 6666665544 3488999999765 46677789999999974 443333
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.53 E-value=0.43 Score=49.68 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=52.7
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEe--eCCCEEEEeeCCCeEEEEe
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFS--RNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s--~~g~~l~t~s~Dg~i~iwd 244 (551)
.++-+.-+.-++..++-.....+.|||.+.+.....-.....+.|..+.|. |+|+.+++.+..+.|.+|-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 344444555566666666667899999999886544433567899999996 6889999999999999997
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.39 E-value=0.072 Score=46.87 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccccE-EEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAI-TSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V-~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 108 (551)
+..|++|+.+|.|.+|...-......+.... ...| +.+.-..++.+..+++.|+.|+.|++.-++.+.....+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcc-cccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence 4578889999999999886222111111111 2223 23333445678899999999999999877665554433
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.35 E-value=1.9 Score=46.28 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=48.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccC---------Cce---eeEee------cccccccEEEEEecCC---CCEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFET---------RGI---AKELR------DKECVAAITSVCWSKY---GHRI 82 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~---------~~~---~~~~~------~~~h~~~V~~l~~s~~---g~~l 82 (551)
-.|..|.+||+|++||..+..|.+.+.=... +.. .+++. ...+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4688999999999999998876544432221 111 11110 1123457888888885 4677
Q ss_pred EEEeCCCCEEEEEcC
Q 008844 83 LVSAADKSLTLWDVL 97 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~ 97 (551)
+.-..|+++++||+.
T Consensus 165 ~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEecCCEEEEEecC
Confidence 777788888888874
No 419
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.28 E-value=3.2 Score=40.55 Aligned_cols=211 Identities=17% Similarity=0.266 Sum_probs=107.2
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEE--EecCCCCCcEEEEeeCC---CCcEEEEcCCCceeeeccc
Q 008844 78 YGHRILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQAR--LHPGSSTPSLCLACPLS---SAPMIVDLSTGSTSILPIA 151 (551)
Q Consensus 78 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~--~~p~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~ 151 (551)
...+|+.....+-+.+||+ .|+.+..+..... -..+. |.-.+...-++++...+ ..|.+|.+.........+.
T Consensus 67 ~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GG-EEEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred ccceEEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 3457777778889999998 5677776653321 11222 22223222234444443 4688887764222111111
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCceEEEEee---CCC-EEEEEecCceEEEEECC---CCc----EEEeeeccCccceE
Q 008844 152 VPDVANGIAPSSRNKYSDGTPPFTPTAACFNK---YGD-LVYVGNSKGEILVIDHK---SNQ----IRALVPVSGAAVIK 220 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~-~l~~g~~dg~i~i~d~~---~~~----~~~~~~~~~~~~i~ 220 (551)
... ..+. .....+..+|+-. +|. ++++...+|.+..|-+. .+. .++.+. -...+.
T Consensus 146 ~~~--~p~~----------~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~E 211 (381)
T PF02333_consen 146 DPA--APIA----------TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPE 211 (381)
T ss_dssp BTT--C-EE-----------SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EE
T ss_pred CCC--cccc----------cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcce
Confidence 000 0000 0001466777643 343 66677888988887664 333 355553 355788
Q ss_pred EEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee--cccccccceeeeeee
Q 008844 221 NIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF--REFQDSITKMHWKAP 298 (551)
Q Consensus 221 ~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~ 298 (551)
.++......+|+.+-.+.-|+-|+ ..|..... ...+... ..+...+..+ ++
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~-Aep~~~~~-----------------------~~~v~~~~g~~l~aDvEGl---al 264 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYD-AEPEGGND-----------------------RTLVASADGDGLVADVEGL---AL 264 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEE-SSCCC-S-------------------------EEEEEBSSSSB-S-EEEE---EE
T ss_pred EEEEecccCCEEEecCccEEEEEe-cCCCCCCc-----------------------ceeeecccccccccCccce---EE
Confidence 999998888999999998888887 32221110 1111111 1133334422 33
Q ss_pred EEcCCC-CEEEEeeccCCcceEEEEecC--CceeEEE
Q 008844 299 CFSGDG-EWVIAGSASKGEHKIYIWDRA--GYLVKIL 332 (551)
Q Consensus 299 ~~s~dg-~~l~~gs~~~~dg~I~iwd~~--~~~~~~l 332 (551)
-..++| .||++++. |++...||+.. ...+..+
T Consensus 265 y~~~~g~gYLivSsQ--G~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 265 YYGSDGKGYLIVSSQ--GDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EE-CCC-EEEEEEEG--GGTEEEEEESSTT--EEEEE
T ss_pred EecCCCCeEEEEEcC--CCCeEEEEecCCCCcccceE
Confidence 334444 47777776 37899999998 3444444
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.3 Score=52.85 Aligned_cols=144 Identities=11% Similarity=0.088 Sum_probs=88.8
Q ss_pred CceEEEEeeCCCEEEEEecC--ceEEEEECCCCcEEE---eee-------ccCccceEEEEEeeCCC-EEEEeeCCCeEE
Q 008844 175 TPTAACFNKYGDLVYVGNSK--GEILVIDHKSNQIRA---LVP-------VSGAAVIKNIVFSRNGQ-YLLTNSNDRTIR 241 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~d--g~i~i~d~~~~~~~~---~~~-------~~~~~~i~~l~~s~~g~-~l~t~s~Dg~i~ 241 (551)
.+..+...+|+...++.... -.|..||+++...-. ..+ ........++.|+|.-. ..+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 55556666676555544332 368899997643311 110 01234456778887633 356677889888
Q ss_pred EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEE
Q 008844 242 IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYI 321 (551)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~i 321 (551)
+..+... ...+.. .......+ +++|+|.|+.++.|.. .|++.-
T Consensus 182 V~~~~~~----------------------------~~~v~s-~p~t~~~T-----av~WSprGKQl~iG~n---nGt~vQ 224 (1405)
T KOG3630|consen 182 VKSTKQL----------------------------AQNVTS-FPVTNSQT-----AVLWSPRGKQLFIGRN---NGTEVQ 224 (1405)
T ss_pred hhhhhhh----------------------------hhhhcc-cCccccee-----eEEeccccceeeEecC---CCeEEE
Confidence 8861110 000111 11222223 8999999999999998 899998
Q ss_pred EecCCceeEEEecC----CCceEEEEEecCCCeEEEEc
Q 008844 322 WDRAGYLVKILEGP----KEALIDLAWHPVHPIIVSVS 355 (551)
Q Consensus 322 wd~~~~~~~~l~~h----~~~v~~l~~sp~~~~l~s~s 355 (551)
|...++....+.++ ...|.+|+|-....+|++-+
T Consensus 225 y~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 225 YEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred eecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 88776665655543 25799999988877777654
No 421
>PHA03098 kelch-like protein; Provisional
Probab=95.05 E-value=0.9 Score=47.68 Aligned_cols=184 Identities=12% Similarity=0.064 Sum_probs=86.2
Q ss_pred CCCEEEEEeCCC------eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC-----CCEEEEEcCCCeEE
Q 008844 34 RGTLLAAGCSDG------SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD-----KSLTLWDVLKGEKI 102 (551)
Q Consensus 34 dg~~latg~~dg------~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d-----g~i~vwd~~~~~~~ 102 (551)
++.+++.|+.++ .+..||..+......-...........+.+ ++..++.||.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666776542 577888877665322111100111222222 56777777764 34777887766543
Q ss_pred EEEEcCCCe--eEEEEecCCCCCcEEEEeeCC------CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 103 TRIVLQQTP--LQARLHPGSSTPSLCLACPLS------SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 103 ~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
..-..+.+. ..+... + ..+++.++.. ..+..||..+......... +.. .
T Consensus 372 ~~~~lp~~r~~~~~~~~-~---~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---------p~~---------r- 428 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV-N---NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---------PIS---------H- 428 (534)
T ss_pred eCCCcCcCCccceEEEE-C---CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC---------Ccc---------c-
Confidence 222111111 111111 1 2345555421 3466777776654432110 000 0
Q ss_pred CceEEEEeeCCCEEEEEecC--------ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC-----CeEE
Q 008844 175 TPTAACFNKYGDLVYVGNSK--------GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND-----RTIR 241 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D-----g~i~ 241 (551)
.-.+ +...++.+++.|+.+ ..+.+||..+.+-...-.......-.++ ..-+++.++.|+.+ +.|.
T Consensus 429 ~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 429 YGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIE 506 (534)
T ss_pred cCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeE
Confidence 1112 222355666777643 2388999887765332211111111112 22267777777654 4577
Q ss_pred EEe
Q 008844 242 IYD 244 (551)
Q Consensus 242 iwd 244 (551)
+||
T Consensus 507 ~yd 509 (534)
T PHA03098 507 VYD 509 (534)
T ss_pred EEe
Confidence 777
No 422
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.04 E-value=3.3 Score=39.37 Aligned_cols=150 Identities=11% Similarity=0.025 Sum_probs=78.2
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.+..+..+++|++++++..-....-||.-...-...- ......|..|.|.|++.+.+++ ..|.|++=+ ..
T Consensus 146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~-~~------- 215 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD-DP------- 215 (302)
T ss_dssp -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE--T-------
T ss_pred eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEcc-CC-------
Confidence 6788888999998888865555567775433222221 1456889999999998876655 888887765 00
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeecccccc--cceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEE
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDS--ITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKI 331 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~ 331 (551)
.....+.....+ .....+-.++|.+++...|+|.. |.|+ ...+ |+--..
T Consensus 216 -----------------------~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~----G~l~-~S~DgGktW~~ 267 (302)
T PF14870_consen 216 -----------------------DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS----GTLL-VSTDGGKTWQK 267 (302)
T ss_dssp -----------------------TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST----T-EE-EESSTTSS-EE
T ss_pred -----------------------CCccccccccCCcccCceeeEEEEecCCCCEEEEeCC----ccEE-EeCCCCccceE
Confidence 011222221111 12222348899999888887775 5444 3444 665555
Q ss_pred Eec---CCCceEEEEEecCCCeEEEEcCCCcEEEE
Q 008844 332 LEG---PKEALIDLAWHPVHPIIVSVSLTGWVYIW 363 (551)
Q Consensus 332 l~~---h~~~v~~l~~sp~~~~l~s~s~dg~i~iW 363 (551)
... -...++.|.|.+..+-++ .+.+|.|.-|
T Consensus 268 ~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 268 DRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp -GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred CccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 432 235688888876655554 4558877654
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=94.63 E-value=4.8 Score=39.23 Aligned_cols=153 Identities=10% Similarity=0.065 Sum_probs=85.6
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.+..+.+.+++.++++| ..|.+..-.-..++............++++.+.++++.++++ ..|.+++=. .
T Consensus 174 ~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s-~-------- 242 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFND-P-------- 242 (334)
T ss_pred eEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEcc-C--------
Confidence 67888899988666554 456554321122233333333456788999999999877665 567765421 0
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEe
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
.++......... .......+..+.+.+++..+++|. +|.|+ .... |+....+.
T Consensus 243 --------------------d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~----~G~v~-~S~d~G~tW~~~~ 296 (334)
T PRK13684 243 --------------------DDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGG----NGTLL-VSKDGGKTWEKDP 296 (334)
T ss_pred --------------------CCCCccccccCC-ccccccceeeEEEcCCCCEEEEcC----CCeEE-EeCCCCCCCeECC
Confidence 001111111000 000111223778899888777765 46555 3444 55555443
Q ss_pred c---CCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 334 G---PKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 334 ~---h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
. -....+.+.|..++..++ .+..|.|.-|+-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 297 VGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred cCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 2 224578888877766655 455788877763
No 424
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=3.9 Score=37.84 Aligned_cols=132 Identities=20% Similarity=0.137 Sum_probs=83.8
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---eeeEeecccccccEEEEEecCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG---IAKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~---~~~~~~~~~h~~~V~~l~~s~~g 79 (551)
|+|.|..+-.-|..+..+.-.+--.++.. .|+++.++..+.-+.+.|+.+.. +...+... ...-..++.| |
T Consensus 108 L~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~--~~d~~~v~IS--G 181 (370)
T COG5276 108 LRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP--GGDTHDVAIS--G 181 (370)
T ss_pred eEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC--CCCceeEEEe--c
Confidence 56677777777766665544455556555 48888888866667788887543 33333332 3334556665 7
Q ss_pred CEEEEEeCCCCEEEEEcCCC---eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 80 HRILVSAADKSLTLWDVLKG---EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
++-+.+..|+-+.|-|+... ..+...........+..+++ +....-.+..+.+.|..+...
T Consensus 182 n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn-----r~y~vvy~egvlivd~s~~ss 245 (370)
T COG5276 182 NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN-----RAYLVVYDEGVLIVDVSGPSS 245 (370)
T ss_pred CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC-----eeEEEEcccceEEEecCCCCC
Confidence 78888889999999998653 34444444445556655554 455555666677777776653
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.53 E-value=0.8 Score=47.76 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=49.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEec--CCCCEEEEEeCCCCEEEEEc
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS--KYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s--~~g~~l~s~s~dg~i~vwd~ 96 (551)
++-+.-|.-++..++-+....+.|||...+.+...-.. .....|..+.|. |+|+.+++.|..+.|.+|--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 33444444555555555556799999987775443332 236899999995 58899999999999999853
No 426
>PRK13684 Ycf48-like protein; Provisional
Probab=94.49 E-value=5.1 Score=39.01 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=39.7
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc---CccceEEEEEeeCCCEEEEeeCCCeEE
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS---GAAVIKNIVFSRNGQYLLTNSNDRTIR 241 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~l~~s~~g~~l~t~s~Dg~i~ 241 (551)
.++++.+.+++..+++|. .|.+.+-....+..-.....+ ....+..+.+.+++..++++ .+|.|.
T Consensus 216 ~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 216 RLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred cceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 678888999888777654 576653334444432222111 23457889999887755554 667554
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.44 E-value=1.5 Score=43.32 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=36.9
Q ss_pred ceEEEEEEcCCCCEEEEEe-----------CCC-eEEEEeccC--Cce--eeEeecccccccEEEEEecCCCCEEEEEeC
Q 008844 24 GVMKCIAFNRRGTLLAAGC-----------SDG-SCVIWDFET--RGI--AKELRDKECVAAITSVCWSKYGHRILVSAA 87 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~-----------~dg-~I~iwd~~~--~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~ 87 (551)
.....|+|.++|+++++-. ..+ .|.+++-.+ +.. ...+... ....+.|+|.++| +++ ++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--l~~p~Gi~~~~~G-lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--LSMVTGLAVAVGG-VYV-ATP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--CCCccceeEecCC-EEE-eCC
Confidence 3457899999999887643 123 677775432 322 2333322 3456889999888 444 444
Q ss_pred CC
Q 008844 88 DK 89 (551)
Q Consensus 88 dg 89 (551)
..
T Consensus 90 ~~ 91 (367)
T TIGR02604 90 PD 91 (367)
T ss_pred Ce
Confidence 43
No 428
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.34 E-value=9.4 Score=41.42 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=71.9
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC------CEEEEeeCCCeEEEEeCcCC
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG------QYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g------~~l~t~s~Dg~i~iwd~~~~ 248 (551)
.++....+.+...+++++.++.+...++..+.............|.|+.++|-| +++++|..+..+.+.- ..|
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~-~~p 567 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILT-FLP 567 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEE-ECC
Confidence 455555555666788888888888888877664444333446789999999742 3788888877766554 222
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
. -++.........+-.-.+--.+|-.|+.||.++.. ||.+..|-+.
T Consensus 568 d----------------------------~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalg---dG~l~~fv~d 613 (1096)
T KOG1897|consen 568 D----------------------------LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALG---DGALLYFVLD 613 (1096)
T ss_pred C----------------------------cceeeeeccCCCccchheeeEEeeccceEEEEEcC---CceEEEEEEE
Confidence 1 11111111111111111114466667899999998 8888877665
No 429
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.33 E-value=1.9 Score=34.90 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=73.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeccCC--------ceeeEeecccccccEEEEEecC-----CCCEEEEEeCCCCEEE
Q 008844 27 KCIAFNRRGTLLAAGCSDGSCVIWDFETR--------GIAKELRDKECVAAITSVCWSK-----YGHRILVSAADKSLTL 93 (551)
Q Consensus 27 ~~l~fs~dg~~latg~~dg~I~iwd~~~~--------~~~~~~~~~~h~~~V~~l~~s~-----~g~~l~s~s~dg~i~v 93 (551)
..-.|......|++++.-|.|.|++.... ..++.|.. ...|++|+-.+ ....|+.|+ ...|..
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliGt-~t~lla 77 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIGT-QTSLLA 77 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEec-cceEEE
Confidence 34567666778999999999999987643 23444543 46777776543 245666666 567999
Q ss_pred EEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 94 WDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
||+....-+.....+..+..+.+-.-+....-++..+.+..|.-||....+
T Consensus 78 YDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 78 YDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred EEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 999888766666666666666554433333445555555566666554443
No 430
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.28 E-value=1.5 Score=44.42 Aligned_cols=158 Identities=10% Similarity=0.077 Sum_probs=87.1
Q ss_pred CceEEEEeeCCCEEEEEe--cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC----CEEEEeeCCCeEEEEeCcCC
Q 008844 175 TPTAACFNKYGDLVYVGN--SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG----QYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g----~~l~t~s~Dg~i~iwd~~~~ 248 (551)
++..++|..-...+++.- .+|.+++=|. ..+. .-..|..+.|.|-+ ..|++......|.||.+-..
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viG-----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIG-----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCCc---cEee-----ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 788899974333333332 2444333222 1222 33458889999853 24555567889999983211
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--C
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--G 326 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~ 326 (551)
..+..+.+ +........... +--..|.|+|....|+.-+. ...-.++++. +
T Consensus 93 ~~e~~K~l-----------------------~sQtcEi~e~~p-vLpQGCVWHPk~~iL~VLT~---~dvSV~~sV~~d~ 145 (671)
T PF15390_consen 93 TTERNKLL-----------------------MSQTCEIREPFP-VLPQGCVWHPKKAILTVLTA---RDVSVLPSVHCDS 145 (671)
T ss_pred ccccccce-----------------------eeeeeeccCCcc-cCCCcccccCCCceEEEEec---CceeEeeeeeeCC
Confidence 11111110 001111111110 11127789999999888776 3333455555 4
Q ss_pred ceeEEEecCCCceEEEEEecCCCeEEEE-cCCCcEEEEecCC
Q 008844 327 YLVKILEGPKEALIDLAWHPVHPIIVSV-SLTGWVYIWAKDY 367 (551)
Q Consensus 327 ~~~~~l~~h~~~v~~l~~sp~~~~l~s~-s~dg~i~iW~~~~ 367 (551)
..++.=-...+-|.+.+|.+||+.|+.+ +..=.-+|||-..
T Consensus 146 srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 146 SRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 4444333456789999999999966554 4445578998654
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.17 E-value=10 Score=41.25 Aligned_cols=93 Identities=8% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCC
Q 008844 79 GHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
+..|+.++.++.|.-.|..+|+.+..+......... + ...+ ...+.+|+........
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~---~------~~~~---cRGvay~~~p~~~~~~----------- 250 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG---R------QHQT---CRGVSYYDAPAAAAGP----------- 250 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc---c------cccc---ccceEEecCCcccccc-----------
Confidence 557888888899999999999999988765432110 0 0000 1223333321111000
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEee
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALV 211 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 211 (551)
.+. .+-..++..|+.++.||.|.-.|..+|+.+..+
T Consensus 251 ----------------~~~-~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~f 286 (764)
T TIGR03074 251 ----------------AAP-AAPADCARRIILPTSDARLIALDADTGKLCEDF 286 (764)
T ss_pred ----------------ccc-ccccccCCEEEEecCCCeEEEEECCCCCEEEEe
Confidence 000 000123567888999999999999999998766
No 432
>PHA02790 Kelch-like protein; Provisional
Probab=94.15 E-value=3.3 Score=42.72 Aligned_cols=182 Identities=10% Similarity=-0.020 Sum_probs=85.1
Q ss_pred CCCEEEEEeCCC-----eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC--CCEEEEEcCCCeEEEEEE
Q 008844 34 RGTLLAAGCSDG-----SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD--KSLTLWDVLKGEKITRIV 106 (551)
Q Consensus 34 dg~~latg~~dg-----~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d--g~i~vwd~~~~~~~~~~~ 106 (551)
++.++++|+.++ .+..||..++.....-...........+. -++...+.||.+ .++..||..++.....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777543 46778887765433221110011111222 356677777753 457788876664433222
Q ss_pred cCCCeeEEE-EecCCCCCcEEEEeeCCC---CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q 008844 107 LQQTPLQAR-LHPGSSTPSLCLACPLSS---APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN 182 (551)
Q Consensus 107 ~~~~~~~~~-~~p~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 182 (551)
.+.+..... ..-+ ..+.+.|+.++ .+..||..+......+.-... .....+..
T Consensus 349 l~~~r~~~~~~~~~---g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~--------------------r~~~~~~~ 405 (480)
T PHA02790 349 LLKPRCNPAVASIN---NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP--------------------HYKSCALV 405 (480)
T ss_pred CCCCCcccEEEEEC---CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc--------------------cccceEEE
Confidence 222211111 1111 22455555433 355677666554432111000 01111223
Q ss_pred eCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC-----CeEEEEe
Q 008844 183 KYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND-----RTIRIYD 244 (551)
Q Consensus 183 ~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D-----g~i~iwd 244 (551)
-+|++.+.| |.+.+||..+.+-...-+......-.+++ .-+|+..++|+.+ .++..||
T Consensus 406 ~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 406 FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEE
Confidence 355666666 45788998876553322212211111222 2367777887754 3466776
No 433
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=1.5 Score=45.79 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=37.9
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR 226 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~ 226 (551)
.+.-+..||+.++|+-=+..|.|.+.+....+....+.......-..++|.-
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 6778889999999999999999999998877776655422333333555543
No 434
>PHA03098 kelch-like protein; Provisional
Probab=94.00 E-value=2.1 Score=45.00 Aligned_cols=148 Identities=15% Similarity=0.073 Sum_probs=72.2
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC------CCEEEEEcCCCeEE
Q 008844 34 RGTLLAAGCSD-----GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD------KSLTLWDVLKGEKI 102 (551)
Q Consensus 34 dg~~latg~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d------g~i~vwd~~~~~~~ 102 (551)
++.+++.|+.+ ..+..||..+++....-... +...-.+++. -+++.++.||.+ ..+..||+.+++..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 57777788765 35778888776543221111 0111111222 256667777632 45788898776543
Q ss_pred EEEEcCCC--eeEEEEecCCCCCcEEEEeeCC--------CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 103 TRIVLQQT--PLQARLHPGSSTPSLCLACPLS--------SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 103 ~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
..-..+.+ ...+... + ..+++.++.. ..+.+||..+++......... .
T Consensus 420 ~~~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~------------------~ 477 (534)
T PHA03098 420 KGSPLPISHYGGCAIYH-D---GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF------------------P 477 (534)
T ss_pred ecCCCCccccCceEEEE-C---CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc------------------c
Confidence 32211111 1111111 1 2244555432 126777777766554321100 0
Q ss_pred CCCceEEEEeeCCCEEEEEecC-----ceEEEEECCCCcE
Q 008844 173 PFTPTAACFNKYGDLVYVGNSK-----GEILVIDHKSNQI 207 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~d-----g~i~i~d~~~~~~ 207 (551)
......+.+ ++++++.|+.+ ..|.+||..+.+-
T Consensus 478 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 478 RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 001122222 56677777654 4688888877653
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.96 E-value=0.2 Score=52.80 Aligned_cols=154 Identities=15% Similarity=0.145 Sum_probs=87.4
Q ss_pred CceEEEEECC--CCcEEEee----eccCccceEEEEEee---CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCC
Q 008844 194 KGEILVIDHK--SNQIRALV----PVSGAAVIKNIVFSR---NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIA 264 (551)
Q Consensus 194 dg~i~i~d~~--~~~~~~~~----~~~~~~~i~~l~~s~---~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (551)
-|.+.||++. .|++...+ ...-...+.-+.|.| +..++..+-.++.|++....+.
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra---------------- 215 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA---------------- 215 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH----------------
Confidence 3678888765 34432222 113344455566654 5667777778888888762111
Q ss_pred CCCcceeeeeccceeeeeecccccccceeee------eeeEEcCCCCEEEEeeccCCcceEEEEecC--Cc----eeEEE
Q 008844 265 EPNGIEKMKMVGSKCLALFREFQDSITKMHW------KAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GY----LVKIL 332 (551)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~----~~~~l 332 (551)
....++.|...+....+ .--.+||||..+|+++. ||.+++|.+. |+ ++...
T Consensus 216 --------------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~---dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 216 --------------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS---DGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred --------------HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec---CCccceeeeeeeccccHhhhhcc
Confidence 11223334433332111 01248999999999999 9999999877 44 34445
Q ss_pred ecCCC-ceEEEEEecCC---------CeEEEEcC-CCcEEEEecCCCCcceeecCCcce
Q 008844 333 EGPKE-ALIDLAWHPVH---------PIIVSVSL-TGWVYIWAKDYTENWSAFAPDFKE 380 (551)
Q Consensus 333 ~~h~~-~v~~l~~sp~~---------~~l~s~s~-dg~i~iW~~~~~~~~~~~spd~~~ 380 (551)
+.|.. +-.|.-|+... .++++++. +.-+++|.....++...|.+|+-.
T Consensus 279 kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~ 337 (1283)
T KOG1916|consen 279 KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ 337 (1283)
T ss_pred CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceE
Confidence 55652 22222233221 24555554 556999998877776555665443
No 436
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=3.5 Score=36.13 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=100.3
Q ss_pred cceeecccccceE--EEEEEcCCCCEEEEEeCC--CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEE-EeCC
Q 008844 14 PEVIEEYLEHGVM--KCIAFNRRGTLLAAGCSD--GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILV-SAAD 88 (551)
Q Consensus 14 ~~~l~~~~h~~~V--~~l~fs~dg~~latg~~d--g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~s~d 88 (551)
++++..+.|.... ..+.+ .+|.++.+.+.- ..|++||+.+++.+..-... ...+..=-...-|.++.. .-.+
T Consensus 34 ~evi~~yphDs~sfTQGL~~-~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~e 110 (262)
T COG3823 34 YEVIRTYPHDSTSFTQGLEY-LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWKE 110 (262)
T ss_pred eEEEEeccCchhhhhcceee-eCCEEEEeccccccceeEEEeccCceEEEEeecC--CccccccceeeccceEEEEEecc
Confidence 3566666565321 12222 245566655443 46999999998876554332 111111111111233222 2247
Q ss_pred CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceee-eccccCCCCCCCCCCCCCCC
Q 008844 89 KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSI-LPIAVPDVANGIAPSSRNKY 167 (551)
Q Consensus 89 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 167 (551)
|...++|..+.+++..+........+...- . .++.+....++++-|-.+-.... +.+...
T Consensus 111 gvaf~~d~~t~~~lg~~~y~GeGWgLt~d~--~---~LimsdGsatL~frdP~tfa~~~~v~VT~~-------------- 171 (262)
T COG3823 111 GVAFKYDADTLEELGRFSYEGEGWGLTSDD--K---NLIMSDGSATLQFRDPKTFAELDTVQVTDD-------------- 171 (262)
T ss_pred ceeEEEChHHhhhhcccccCCcceeeecCC--c---ceEeeCCceEEEecCHHHhhhcceEEEEEC--------------
Confidence 888889988888888877766555544322 1 25555555566665544432111 000000
Q ss_pred CCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-----------cCccceEEEEEeeCC-CEEEEe
Q 008844 168 SDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-----------SGAAVIKNIVFSRNG-QYLLTN 234 (551)
Q Consensus 168 ~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~i~~l~~s~~g-~~l~t~ 234 (551)
+..-..++-+.|- +|...|---....|...+..+|+.+..+.. .+....+.|++.|++ ++++||
T Consensus 172 --g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 172 --GVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred --Ceecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 0000022333332 343344333455677777777777665532 234567889999987 556665
No 437
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.70 E-value=5.1 Score=38.88 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=41.6
Q ss_pred CceEEEEeeCCCEEEEEec-----Cc-----------eEEEEECCC-CcEE--Eeeecc------CccceEEEEEeeCCC
Q 008844 175 TPTAACFNKYGDLVYVGNS-----KG-----------EILVIDHKS-NQIR--ALVPVS------GAAVIKNIVFSRNGQ 229 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~-----dg-----------~i~i~d~~~-~~~~--~~~~~~------~~~~i~~l~~s~~g~ 229 (551)
.+-+++++|+|+.|+++.. ++ .|..||..+ +... ..++.. ....|..+.+-++++
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 6788999999986666543 22 344556655 3222 222222 457788899999988
Q ss_pred EEEEee-----CCCeEEEEe
Q 008844 230 YLLTNS-----NDRTIRIYD 244 (551)
Q Consensus 230 ~l~t~s-----~Dg~i~iwd 244 (551)
+|+.=- ....++||.
T Consensus 228 lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 228 LLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred EEEEEccCCCCccceEEEEE
Confidence 666431 234555655
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.60 E-value=0.011 Score=57.53 Aligned_cols=148 Identities=15% Similarity=0.207 Sum_probs=104.9
Q ss_pred cEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeee
Q 008844 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL 148 (551)
Q Consensus 69 ~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 148 (551)
......|-+.+.-|+.++.+..+..|| +.|+.............++|.- ..+..++.+...+.+.+|++.+.....+
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNPTGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhh-hhcceecccCCchhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 334566888777788888888999998 4566665555555556666665 3356778888899999999988765443
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC
Q 008844 149 PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG 228 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g 228 (551)
...... .-.-+.|++.+..++.|...|.+.|++..+.+.....- .|...++++++.+.+
T Consensus 113 E~gg~~--------------------s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 113 ESGGTS--------------------SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLED 171 (615)
T ss_pred hccCcc--------------------hHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccc
Confidence 322211 22236788888899999999999999998877665551 388999999999887
Q ss_pred CEEEEeeCCCeEE
Q 008844 229 QYLLTNSNDRTIR 241 (551)
Q Consensus 229 ~~l~t~s~Dg~i~ 241 (551)
. .+.++.|..+.
T Consensus 172 ~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 172 Y-VILCDCDNTLS 183 (615)
T ss_pred e-eeecCcHHHHH
Confidence 5 44444454443
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.53 E-value=6.5 Score=36.77 Aligned_cols=227 Identities=14% Similarity=0.132 Sum_probs=118.2
Q ss_pred cEEEEEecCCCCEEEEEeCCCCEEEEEcC------CC-eEEEEEEc------CCCeeEEEEecCC---------CCCcEE
Q 008844 69 AITSVCWSKYGHRILVSAADKSLTLWDVL------KG-EKITRIVL------QQTPLQARLHPGS---------STPSLC 126 (551)
Q Consensus 69 ~V~~l~~s~~g~~l~s~s~dg~i~vwd~~------~~-~~~~~~~~------~~~~~~~~~~p~~---------~~~~~~ 126 (551)
.-+.|+++|.+.+-++...-+...+||.. .. .++-.+.. ...+..+.|+... .....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34689999998888887778899999986 12 22333331 1245666666432 123457
Q ss_pred EEeeCCCCcEEEEcCCCceeeec--cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe--eCCCEEEEEe-cCceEEEEE
Q 008844 127 LACPLSSAPMIVDLSTGSTSILP--IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN--KYGDLVYVGN-SKGEILVID 201 (551)
Q Consensus 127 ~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~g~~l~~g~-~dg~i~i~d 201 (551)
+.++.+|+|.-|.-.-+...... +.. +.. .... ....+++. ..+.+|+.+. ..++|.+||
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~-d~s------------~~ga--vYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVV-DAS------------QQGN--VYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEE-ccC------------CCcc--eeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 88888888888875433331000 000 000 0011 23344444 3356666665 478899998
Q ss_pred CCCCcEEEe--ee---ccCcc---ce---------EEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCC
Q 008844 202 HKSNQIRAL--VP---VSGAA---VI---------KNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIA 264 (551)
Q Consensus 202 ~~~~~~~~~--~~---~~~~~---~i---------~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (551)
-.-...... +. .+..- .| +-..-.++++.=+.+..-|.|-+||..
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~------------------ 230 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN------------------ 230 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC------------------
Confidence 654332110 00 00000 01 111111222222223334667777711
Q ss_pred CCCcceeeeeccceeeeeecccccccceeeeeeeEEcC------CCCEEEEeeccCCcceEEEEecC-CceeEEEecCCC
Q 008844 265 EPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG------DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKE 337 (551)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~------dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~ 337 (551)
+..++.+. .......+| .++..| .|.+|+.--. ||+|..||.. |..+..|....+
T Consensus 231 ------------G~l~~r~a--s~g~LNaPW-G~a~APa~FG~~sg~lLVGNFG---DG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 231 ------------GQLLRRVA--SSGRLNAPW-GLAIAPESFGSLSGALLVGNFG---DGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred ------------CcEEEEec--cCCcccCCc-eeeeChhhhCCCCCCeEEeecC---CceeEEecCCCCceeeeecCCCC
Confidence 23333331 222334555 566544 4555555444 9999999998 888888876543
Q ss_pred ------ceEEEEEec
Q 008844 338 ------ALIDLAWHP 346 (551)
Q Consensus 338 ------~v~~l~~sp 346 (551)
.++.|+|..
T Consensus 293 ~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 293 HPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEecCeEEeeeCC
Confidence 356777755
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.35 E-value=1.4 Score=43.71 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=92.4
Q ss_pred CCCEEE-EEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCC----CCcEEEEeeCCCCcEEEEcCCCceeeecccc
Q 008844 78 YGHRIL-VSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSS----TPSLCLACPLSSAPMIVDLSTGSTSILPIAV 152 (551)
Q Consensus 78 ~g~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 152 (551)
+..+|+ .++....+.-.|++.|+.+..+..+..+ -+.+.|... .....+++-.+..+.-.|.+...........
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 3444566777788999999999888776 566666432 2234566666666666665543321111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEE
Q 008844 153 PDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLL 232 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 232 (551)
. .........|..-.. ..+|++|+..|.|++||.-.......++ +-...|..|..+.+|.+|+
T Consensus 557 K---------------dY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~il 619 (776)
T COG5167 557 K---------------DYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHIL 619 (776)
T ss_pred h---------------hcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEE
Confidence 0 011111233333333 3489999999999999976655555554 5678899999999999887
Q ss_pred EeeCCCeEEEEe
Q 008844 233 TNSNDRTIRIYD 244 (551)
Q Consensus 233 t~s~Dg~i~iwd 244 (551)
+.|. ..|.+-|
T Consensus 620 aTCk-~yllL~d 630 (776)
T COG5167 620 ATCK-NYLLLTD 630 (776)
T ss_pred Eeec-ceEEEEe
Confidence 7654 4677777
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.25 E-value=0.42 Score=29.96 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=26.4
Q ss_pred ceEEEEEEcCC-C--CEEEEEeCCCeEEEEeccC
Q 008844 24 GVMKCIAFNRR-G--TLLAAGCSDGSCVIWDFET 54 (551)
Q Consensus 24 ~~V~~l~fs~d-g--~~latg~~dg~I~iwd~~~ 54 (551)
|.|.++.|||. + .+||.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5999988889999999985
No 442
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.99 E-value=4 Score=43.25 Aligned_cols=162 Identities=14% Similarity=0.159 Sum_probs=88.4
Q ss_pred CCEEEEEecCceEEEEECCCCcEEE------eeec---------------cCccceEEEEEee--CCCEEEEeeCCCeEE
Q 008844 185 GDLVYVGNSKGEILVIDHKSNQIRA------LVPV---------------SGAAVIKNIVFSR--NGQYLLTNSNDRTIR 241 (551)
Q Consensus 185 g~~l~~g~~dg~i~i~d~~~~~~~~------~~~~---------------~~~~~i~~l~~s~--~g~~l~t~s~Dg~i~ 241 (551)
.++++++. .+.|.||++....... .+.. +....|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777766 7799999986433211 0000 0123355554443 345788999999999
Q ss_pred EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc--CCCCEEEEeeccCCcceE
Q 008844 242 IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS--GDGEWVIAGSASKGEHKI 319 (551)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s--~dg~~l~~gs~~~~dg~I 319 (551)
+|.+. ..+..+.......... . .. ...-..+.-.+....| .+++. ...++||+++. ...|
T Consensus 128 ~Yyt~-------~I~~~i~~~~~~~~~~-----~-~r-~~i~P~f~~~v~~SaW-GLdIh~~~~~rlIAVSsN---s~~V 189 (717)
T PF08728_consen 128 AYYTE-------TIIEAIERFSEDNDSG-----F-SR-LKIKPFFHLRVGASAW-GLDIHDYKKSRLIAVSSN---SQEV 189 (717)
T ss_pred EEEHH-------HHHHHHHhhccccccc-----c-cc-ccCCCCeEeecCCcee-EEEEEecCcceEEEEecC---CceE
Confidence 99721 0111111110000000 0 00 0011112222333445 77887 77888888887 6777
Q ss_pred EEEecC-C-ceeEE--EecCCCceEEEEEecCC-----C-eEEEEcCCCcEEEEec
Q 008844 320 YIWDRA-G-YLVKI--LEGPKEALIDLAWHPVH-----P-IIVSVSLTGWVYIWAK 365 (551)
Q Consensus 320 ~iwd~~-~-~~~~~--l~~h~~~v~~l~~sp~~-----~-~l~s~s~dg~i~iW~~ 365 (551)
.||-.. . ..... -..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 777554 1 11111 11255678999997654 2 7888888999999888
No 443
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.92 E-value=5 Score=42.55 Aligned_cols=73 Identities=12% Similarity=0.267 Sum_probs=50.1
Q ss_pred CCCCceEEEEeeCC--CEEEEEecCceEEEEECCC-------C----c-------EEEeeeccCccceEEEEEe--eCCC
Q 008844 172 PPFTPTAACFNKYG--DLVYVGNSKGEILVIDHKS-------N----Q-------IRALVPVSGAAVIKNIVFS--RNGQ 229 (551)
Q Consensus 172 ~~~~i~~~~~s~~g--~~l~~g~~dg~i~i~d~~~-------~----~-------~~~~~~~~~~~~i~~l~~s--~~g~ 229 (551)
.++.|+.+....-| ..|+++..||.|.+|.+.+ . . ....+...-...+.+++++ ...+
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce
Confidence 33466666655444 6788999999999997632 0 0 0011111335678899998 7788
Q ss_pred EEEEeeCCCeEEEEe
Q 008844 230 YLLTNSNDRTIRIYD 244 (551)
Q Consensus 230 ~l~t~s~Dg~i~iwd 244 (551)
+||+++....|.||-
T Consensus 179 lIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFA 193 (717)
T ss_pred EEEEecCCceEEEEE
Confidence 999999989999986
No 444
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=6.4 Score=34.56 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=31.1
Q ss_pred ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 192 NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 192 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
-.+|.-.+||..+.+.+..+...+. =..++ .++..|+.+....+++.-|
T Consensus 108 w~egvaf~~d~~t~~~lg~~~y~Ge--GWgLt--~d~~~LimsdGsatL~frd 156 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFSYEGE--GWGLT--SDDKNLIMSDGSATLQFRD 156 (262)
T ss_pred eccceeEEEChHHhhhhcccccCCc--ceeee--cCCcceEeeCCceEEEecC
Confidence 3578888999999888777743333 23343 4565666665555565555
No 445
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=92.38 E-value=10 Score=36.11 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=53.3
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccc----eEEEEEeeCCCEEEEeeCCCeEEEEeC
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAV----IKNIVFSRNGQYLLTNSNDRTIRIYDN 245 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~----i~~l~~s~~g~~l~t~s~Dg~i~iwd~ 245 (551)
+.++++...++|.+|++.-.-..|.++|..+++++..+.....+. -..+++-.+-+++-.+..+++|.|||.
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 368889999999999999999999999999999998884221111 112444445555656678899999993
No 446
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.33 E-value=9 Score=35.22 Aligned_cols=154 Identities=17% Similarity=0.170 Sum_probs=93.3
Q ss_pred ccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEc-CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee
Q 008844 68 AAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVL-QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 68 ~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 146 (551)
..-..++-.|||..-+++...+.|--.|-.+|+....-.. ...+..+..-|++. .-.+.....|.-+|-++....
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~----~Witd~~~aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS----AWITDTGLAIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC----eeEecCcceeEEecCcccceE
Confidence 4456778888998888888888888888888876544332 23455666666653 111222225555555555555
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR 226 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~ 226 (551)
.+++.... .........|.+.|++-+++.. |.---.|..+ ..+..+.......-+.|+..|
T Consensus 138 ~f~lp~~~-----------------a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp 198 (353)
T COG4257 138 RFPLPLEH-----------------ADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATP 198 (353)
T ss_pred Eeeccccc-----------------CCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECC
Confidence 54443221 1126678889999998888752 2111112211 123344334455667889999
Q ss_pred CCCEEEEeeCCCeEEEEe
Q 008844 227 NGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 227 ~g~~l~t~s~Dg~i~iwd 244 (551)
+|..-++.-.++.|-..|
T Consensus 199 dGsvwyaslagnaiarid 216 (353)
T COG4257 199 DGSVWYASLAGNAIARID 216 (353)
T ss_pred CCcEEEEeccccceEEcc
Confidence 999877776777777776
No 447
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=92.16 E-value=11 Score=36.00 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=40.1
Q ss_pred CCCEEEEEeCCCeEEEEeccC--CceeeEeecccccccEEEEEecCCCCEEEEEe-CCCCEEEEEcC
Q 008844 34 RGTLLAAGCSDGSCVIWDFET--RGIAKELRDKECVAAITSVCWSKYGHRILVSA-ADKSLTLWDVL 97 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~vwd~~ 97 (551)
++++|+.|+.+|.. +.++.. ....+.+. ...|+++...+.-+.|++-+ ....++++++.
T Consensus 12 ~~~~lL~GTe~Gly-~~~~~~~~~~~~kl~~----~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEGLY-VLNISDQPGTLEKLIG----RRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCceE-EEEcccCCCCeEEecC----cCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 44689999999854 444554 33443332 57899999998877776655 23349999983
No 448
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=3 Score=40.96 Aligned_cols=143 Identities=11% Similarity=0.165 Sum_probs=85.9
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCC--cEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccc
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSN--QIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
.+.+-|...++.+++.. .|.+.-|-.... .....+.....++|.+|.|++|.+.||+--.+.+|.+++ +.+...
T Consensus 25 sngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~n-f~~d~~-- 100 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCN-FIPDNS-- 100 (657)
T ss_pred ccceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEe-cCCCch--
Confidence 34555655555555444 344445544332 222223224567999999999999999999999999998 322111
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEE
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKI 331 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~ 331 (551)
.....+...+....+...+|+.+ .-+|..+. .-+-+|-.. ...++.
T Consensus 101 ---------------------------~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~----~G~e~y~v~pekrslRl 148 (657)
T KOG2377|consen 101 ---------------------------QLEYTQECKTKNANILGFCWTSS-TEIAFITD----QGIEFYQVLPEKRSLRL 148 (657)
T ss_pred ---------------------------hhHHHHHhccCcceeEEEEEecC-eeEEEEec----CCeEEEEEchhhhhhhh
Confidence 01111222222222336677766 44555543 236666665 667777
Q ss_pred EecCCCceEEEEEecCCCeEEEE
Q 008844 332 LEGPKEALIDLAWHPVHPIIVSV 354 (551)
Q Consensus 332 l~~h~~~v~~l~~sp~~~~l~s~ 354 (551)
.+.|...|.=..|+++.+.+.-+
T Consensus 149 Vks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 149 VKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhcccCccEEEEccccceEeee
Confidence 88888899999999988744333
No 449
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=91.77 E-value=9.5 Score=42.35 Aligned_cols=177 Identities=18% Similarity=0.218 Sum_probs=95.1
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcC-------C--CCEEEEEeC---------CCeEEEEeccC-----C----
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNR-------R--GTLLAAGCS---------DGSCVIWDFET-----R---- 55 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~-------d--g~~latg~~---------dg~I~iwd~~~-----~---- 55 (551)
+.|..|.+++....+. +.....|++++..- . ..|||+|.. -|.+.|+|+-. +
T Consensus 1006 i~LisP~sw~vi~~ie-fq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t 1084 (1366)
T KOG1896|consen 1006 IQLISPESWEVIDKIE-FQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFT 1084 (1366)
T ss_pred eEEecCCccccccccc-cCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcc
Confidence 4456676666554432 22334455555421 1 248888753 48899999732 2
Q ss_pred -ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC
Q 008844 56 -GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK-GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS 133 (551)
Q Consensus 56 -~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 133 (551)
..++.+....-+++|..++=- +|. |+++. ...|.||+++. +..+..--...+++-..... -.++++++..-.
T Consensus 1085 ~~KlKel~~eE~KGtVsavceV-~G~-l~~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~---vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCEV-RGH-LLSSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKV---VKNLILAGDVMK 1158 (1366)
T ss_pred cceeeeeehhhcccceEEEEEe-ccE-EEEcc-CcEEEEEEeccCCcceeeEEeccceeEEehhh---hhhheehhhhhh
Confidence 233444333346788777654 464 55443 46799999944 44333222222222211111 123566666666
Q ss_pred CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC--EEEEEecCceEEEEECC
Q 008844 134 APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD--LVYVGNSKGEILVIDHK 203 (551)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~g~~dg~i~i~d~~ 203 (551)
.+.+.-......+...+... ..+..+.++.|--+|. .++++..++.|++|-..
T Consensus 1159 sisfl~fqeep~rlsL~srd-----------------~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1159 SISFLGFQEEPYRLSLLSRD-----------------FEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred ceEEEEEccCceEEEEeecC-----------------CchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 66666555443333222211 1122678888877774 56788889988887543
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.69 E-value=0.058 Score=56.51 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=45.6
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEE-----------EEeeCCCEEEEeeCCCeEEEEe
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNI-----------VFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l-----------~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
|.-+-|-++.-++.++..+|.|.+..+.+... ..+. .|...++.+ .++|||..+++.+.||.++.|.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 33333444556778888888888777654332 2222 354443333 3689999999999999999998
Q ss_pred Cc
Q 008844 245 NL 246 (551)
Q Consensus 245 ~~ 246 (551)
+.
T Consensus 264 iy 265 (1283)
T KOG1916|consen 264 IY 265 (1283)
T ss_pred ee
Confidence 43
No 451
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.66 E-value=4.5 Score=42.59 Aligned_cols=279 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred ccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEE
Q 008844 13 FPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLT 92 (551)
Q Consensus 13 ~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~ 92 (551)
++..+..+.|-+.++.+.|.-++--++..-.|.+ ..+....+-+.- ...|.+.+||.|.+.++....+..|.
T Consensus 66 f~dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v-~nGIvaa~wS~DE~~~cvvt~~r~il 137 (1243)
T COG5290 66 FPDKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKV-SNGIVAASWSADEKTWCVVTSTREIL 137 (1243)
T ss_pred cchHhhhhhhhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccc-cCceEEEeeccCCceEEEEEcCceEE
Q ss_pred EEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCC------------------------CCcEEEEcCCCceeee
Q 008844 93 LWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS------------------------SAPMIVDLSTGSTSIL 148 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------------------------~~i~i~d~~~~~~~~~ 148 (551)
+++ ....++..+....... .....-+..+.. ..=.+.++.+++..
T Consensus 138 ~~~-k~fd~ise~~L~~~dl--------~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~-- 206 (1243)
T COG5290 138 LFD-KYFDPISEYHLKKSDL--------VEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKI-- 206 (1243)
T ss_pred EEe-ccccccchhhcchhHH--------HHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceE--
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec----CceEEEEECCCCcEEEeeeccCccceEEEEE
Q 008844 149 PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS----KGEILVIDHKSNQIRALVPVSGAAVIKNIVF 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~ 224 (551)
++|-.|..+++++.. ...+++|.....---..- +..+.-..+.|
T Consensus 207 ------------------------------i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~se--p~~g~e~~LSW 254 (1243)
T COG5290 207 ------------------------------IFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASE--PVTGMEHQLSW 254 (1243)
T ss_pred ------------------------------EEEccCcceeeecchhcccccceeeeccccccccccC--Ccccchhcccc
Q ss_pred eeCCCEEEEeeCCCe-----EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeE
Q 008844 225 SRNGQYLLTNSNDRT-----IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 225 s~~g~~l~t~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 299 (551)
-|+|..+++-..||. |+++. ..-++.-.-....-..-....++
T Consensus 255 kpqgS~~ati~td~~~~S~~ViFfE--------------------------------rNGLrHGef~lr~~~dEk~~~~~ 302 (1243)
T COG5290 255 KPQGSKYATIGTDGCSTSESVIFFE--------------------------------RNGLRHGEFDLRVGCDEKAFLEN 302 (1243)
T ss_pred ccCCceeeeeccCCCCCcceEEEEc--------------------------------cCCcccCCccccCCchhhhhhhh
Q ss_pred EcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCC--eEEEEcCCCcEEEEecCCCCcceeecC
Q 008844 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHP--IIVSVSLTGWVYIWAKDYTENWSAFAP 376 (551)
Q Consensus 300 ~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~--~l~s~s~dg~i~iW~~~~~~~~~~~sp 376 (551)
|.-....++.+.. +.|.+|-.. ...-....-.-..+.-+.|||... ++++.+.-=...+++....+..+.+.-
T Consensus 303 wn~~s~vlav~~~----n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~k~~~~~s~~p~ 378 (1243)
T COG5290 303 WNLLSTVLAVAEG----NLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFSEKKTHHGSEYPF 378 (1243)
T ss_pred hhHHHHHHHHhhc----ceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEeehhhhcCCcccCc
Q ss_pred Cc
Q 008844 377 DF 378 (551)
Q Consensus 377 d~ 378 (551)
|+
T Consensus 379 d~ 380 (1243)
T COG5290 379 DN 380 (1243)
T ss_pred cC
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=8.3 Score=38.73 Aligned_cols=74 Identities=11% Similarity=0.010 Sum_probs=43.4
Q ss_pred EEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC--CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEE
Q 008844 126 CLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP--SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVI 200 (551)
Q Consensus 126 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~ 200 (551)
++.+..| .++.||-+........+........... ............+.|.-+..++.|..++..+.+|.+.++
T Consensus 55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEE
Confidence 3444444 7888888777766665554222211111 111112223334577888899999999999999866554
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.43 E-value=14 Score=37.38 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc------CccceEEEEEeeCC------CEEEEee-------
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS------GAAVIKNIVFSRNG------QYLLTNS------- 235 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~------~~~~i~~l~~s~~g------~~l~t~s------- 235 (551)
....|+|.|+|++|++--..|.|++++..++......... .......|+|+|+- .+|.+..
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Q ss_pred ---CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeec
Q 008844 236 ---NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSA 312 (551)
Q Consensus 236 ---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~ 312 (551)
....|.-|.+............-+.. +.....|... .++|.|||.+.++.+.
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~------------------lP~~~~H~Gg-------rI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAG------------------LPAGNDHNGG-------RLVFGPDGKIYYTIGE 165 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEec------------------CCCCCCcCCc-------eEEECCCCcEEEEECC
Q ss_pred cCCcce----------E--------------------EEEecC--Cc-----------eeEEEecCCCceEEEEEecCCC
Q 008844 313 SKGEHK----------I--------------------YIWDRA--GY-----------LVKILEGPKEALIDLAWHPVHP 349 (551)
Q Consensus 313 ~~~dg~----------I--------------------~iwd~~--~~-----------~~~~l~~h~~~v~~l~~sp~~~ 349 (551)
.+. . +|+.+. |. ...++.--......++|+|++.
T Consensus 166 ---~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~ 242 (454)
T TIGR03606 166 ---QGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT 242 (454)
T ss_pred ---CCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC
Q ss_pred eEEE
Q 008844 350 IIVS 353 (551)
Q Consensus 350 ~l~s 353 (551)
+.++
T Consensus 243 Lw~~ 246 (454)
T TIGR03606 243 LYAS 246 (454)
T ss_pred EEEE
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.42 E-value=0.94 Score=28.45 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=26.1
Q ss_pred ccEEEEEecCCC---CEEEEEeCCCCEEEEEcCCC
Q 008844 68 AAITSVCWSKYG---HRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 68 ~~V~~l~~s~~g---~~l~s~s~dg~i~vwd~~~~ 99 (551)
+.|.++.|+|.. .+|+.+-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368999999854 58888888899999999853
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.34 E-value=1.3 Score=27.61 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCCCEEEEEeC-CCCEEEEEcCCCeEEEEEEcCCCeeEEEE
Q 008844 77 KYGHRILVSAA-DKSLTLWDVLKGEKITRIVLQQTPLQARL 116 (551)
Q Consensus 77 ~~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 116 (551)
|++++|+++.. +++|.++|..++..+..+.....+..+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 56777777654 88999999999998888877655555443
No 456
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.30 E-value=13 Score=40.64 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=51.0
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEee----e--------------ccCccceEEEEEeeCCCEEEEee
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALV----P--------------VSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~----~--------------~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
..|.+++...-+.+++....||+|.++|..+.+.+... . .+.-..+..++|||++..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 36778888888889999999999999998876543322 0 01122445688999999999988
Q ss_pred CCCeEE
Q 008844 236 NDRTIR 241 (551)
Q Consensus 236 ~Dg~i~ 241 (551)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 898855
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.28 E-value=1 Score=40.77 Aligned_cols=71 Identities=20% Similarity=0.376 Sum_probs=52.3
Q ss_pred eEEcCCCCEEEEeeccCCcceEEEEecC-CceeEE-------Ee-------cCCCceEEEEEecCCCeEEEEcCCCcEEE
Q 008844 298 PCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKI-------LE-------GPKEALIDLAWHPVHPIIVSVSLTGWVYI 362 (551)
Q Consensus 298 ~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~-------l~-------~h~~~v~~l~~sp~~~~l~s~s~dg~i~i 362 (551)
+.+..++.||++-+. +|.+++||+. ++.+.. +. .....|..+.++.+|.-|++-+ +|..+.
T Consensus 16 ~~l~~~~~~Ll~iT~---~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 16 SFLECNGSYLLAITS---SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred EEEEeCCCEEEEEeC---CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 456678999999999 9999999998 543322 22 3456788999998888777776 588899
Q ss_pred EecCCCCccee
Q 008844 363 WAKDYTENWSA 373 (551)
Q Consensus 363 W~~~~~~~~~~ 373 (551)
|+.+ ...|..
T Consensus 92 y~~~-L~~W~~ 101 (219)
T PF07569_consen 92 YSPD-LGCWIR 101 (219)
T ss_pred eccc-cceeEE
Confidence 9875 344543
No 458
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.54 E-value=12 Score=33.24 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=41.8
Q ss_pred CEEEEEecCceEEEEECCCC--cEEEeeeccCccceEEEEEeeCCCEEEEeeCC---C---eEEEEe
Q 008844 186 DLVYVGNSKGEILVIDHKSN--QIRALVPVSGAAVIKNIVFSRNGQYLLTNSND---R---TIRIYD 244 (551)
Q Consensus 186 ~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D---g---~i~iwd 244 (551)
..|+++...+.|.+|++... ..+..+ ..-+.|..+.++..|.||+|--.+ . .+|+|-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 45555577788999999843 335555 566889999999999999986432 2 677764
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=90.04 E-value=7.1 Score=40.28 Aligned_cols=68 Identities=6% Similarity=-0.096 Sum_probs=36.5
Q ss_pred CCCCEEEEEeCC--CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC---CEEEEEcCCCeEE
Q 008844 33 RRGTLLAAGCSD--GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK---SLTLWDVLKGEKI 102 (551)
Q Consensus 33 ~dg~~latg~~d--g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~ 102 (551)
-+|.+.+.|+.+ .++..||..+++....-...........+. -+|+..+.||.++ .+..||..++...
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 367777777754 357788877654432211110011111222 2577777777543 4678888766543
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.76 E-value=3.1 Score=37.58 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=49.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEeccCCceeeEe-------ec-----ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC
Q 008844 31 FNRRGTLLAAGCSDGSCVIWDFETRGIAKEL-------RD-----KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 31 fs~dg~~latg~~dg~I~iwd~~~~~~~~~~-------~~-----~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 98 (551)
+..++.+|++-+.+|.+++||+.+++.+..- .. ......|..+.++.+|.-|++-+ +|....|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999987653322 10 02357788889998888777665 57788888654
Q ss_pred Ce
Q 008844 99 GE 100 (551)
Q Consensus 99 ~~ 100 (551)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.70 E-value=23 Score=35.30 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=40.5
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee--ccCccceEEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP--VSGAAVIKNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
.++.+.|.+++..+++| ..|.+... ...++.-.... ..-...++.+.|.++++.+++| .+|.|.-|
T Consensus 329 ~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 57788888777755555 56655554 34444433322 1224568899998777656555 77877655
No 462
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.46 E-value=4.1 Score=40.64 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=88.1
Q ss_pred EeeCCCEEE-EEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC--------CEEEEeeCCCeEEEEeCcCCccc
Q 008844 181 FNKYGDLVY-VGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG--------QYLLTNSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 181 ~s~~g~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g--------~~l~t~s~Dg~i~iwd~~~~~~~ 251 (551)
...+..+|+ .|.....++-.|+..|+.+..+. .|... -+.|.|.. +.|+ |-.+..|.-.| |.
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~-~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrID---PR-- 545 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWD-LKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRID---PR-- 545 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEee-cCCcc--eeecCCchhHHhcCccceEE-eecccceEEec---cc--
Confidence 344445544 45566778889999999998886 33332 46677753 2333 33444443334 11
Q ss_pred cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCC-ceeE
Q 008844 252 GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAG-YLVK 330 (551)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~-~~~~ 330 (551)
..+.+ + ......+.++...+++.. .....|||+|+. .|.|++||.-| ..-.
T Consensus 546 ----------------------~~gNK-i-~v~esKdY~tKn~Fss~~-tTesGyIa~as~---kGDirLyDRig~rAKt 597 (776)
T COG5167 546 ----------------------ARGNK-I-KVVESKDYKTKNKFSSGM-TTESGYIAAASR---KGDIRLYDRIGKRAKT 597 (776)
T ss_pred ----------------------ccCCc-e-eeeeehhccccccccccc-cccCceEEEecC---CCceeeehhhcchhhh
Confidence 11111 1 112233334433343322 234568999998 78999999884 3344
Q ss_pred EEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 331 ILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 331 ~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
.+.+-...|..+..+.+|.+|++.+. ..+.+-++.
T Consensus 598 alP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 598 ALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 56667788999999999997776663 466676665
No 463
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.97 E-value=32 Score=37.77 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=45.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeccCCceee---E------eecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 30 AFNRRGTLLAAGCSDGSCVIWDFETRGIAK---E------LRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 30 ~fs~dg~~latg~~dg~I~iwd~~~~~~~~---~------~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
++..-|+.|..|+.+|.+.+|.+....... . +...-+..+|+.|...+.-.++++-+ |+.|.++++.+-+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCccc
Confidence 344568899999999999999987542111 1 11112256777777766555555544 7778888876654
Q ss_pred E
Q 008844 101 K 101 (551)
Q Consensus 101 ~ 101 (551)
.
T Consensus 100 ~ 100 (877)
T KOG2063|consen 100 P 100 (877)
T ss_pred c
Confidence 4
No 464
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.95 E-value=10 Score=38.31 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=25.4
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCC
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKS 204 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~ 204 (551)
.|..++..+..+.+++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 489999999999999999999999999975
No 465
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.86 E-value=30 Score=35.43 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=46.6
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCC-CcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKS-NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
.|+.+++...| .+..|+...-+..|+..+ +-.+........+.|..|.=.|+++ |..|+.+|.++.
T Consensus 377 nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 377 NITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 67777777744 477777776677788777 4444444334467888888888888 888888887654
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.83 E-value=4.6 Score=45.11 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=45.8
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECC--CC---c-E----------------EEeeeccCccceEEEEEeeCCCEEE
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHK--SN---Q-I----------------RALVPVSGAAVIKNIVFSRNGQYLL 232 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~--~~---~-~----------------~~~~~~~~~~~i~~l~~s~~g~~l~ 232 (551)
.|+|+....+|+.+++|- ||.|+-+-.+ .+ + + +..++..+..+|..|++......|.
T Consensus 180 ~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY 258 (1311)
T KOG1900|consen 180 SVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILY 258 (1311)
T ss_pred eEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceee
Confidence 778888888888666655 4544322111 11 0 0 0111124467999999998888899
Q ss_pred EeeCCCeEEEEe
Q 008844 233 TNSNDRTIRIYD 244 (551)
Q Consensus 233 t~s~Dg~i~iwd 244 (551)
+-+..++|++|+
T Consensus 259 ~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 259 VLSEKGTVSAYD 270 (1311)
T ss_pred eeccCceEEEEE
Confidence 999999999999
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.75 E-value=2.5 Score=44.48 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=47.5
Q ss_pred CCCCEEEEEeCCCeEEEEeccC----CceeeEeeccc--------------------ccccEEEEEecC----CCCEEEE
Q 008844 33 RRGTLLAAGCSDGSCVIWDFET----RGIAKELRDKE--------------------CVAAITSVCWSK----YGHRILV 84 (551)
Q Consensus 33 ~dg~~latg~~dg~I~iwd~~~----~~~~~~~~~~~--------------------h~~~V~~l~~s~----~g~~l~s 84 (551)
++...|+.+..||.+....... +.......... -...+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888899888777653 22111111100 123455666666 6789999
Q ss_pred EeCCCCEEEEEcCCCeEEEEEEcC
Q 008844 85 SAADKSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 85 ~s~dg~i~vwd~~~~~~~~~~~~~ 108 (551)
.+.|+++++||+.++.++......
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999998887665
No 468
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.73 E-value=4.6 Score=30.33 Aligned_cols=50 Identities=18% Similarity=0.393 Sum_probs=33.9
Q ss_pred ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC--CCeEEEE
Q 008844 192 NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN--DRTIRIY 243 (551)
Q Consensus 192 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~--Dg~i~iw 243 (551)
..+|.+..||..+++....+ ..-..-+.|++++++.+|+++-. -+..|.|
T Consensus 34 ~~~GRll~ydp~t~~~~vl~--~~L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLL--DGLYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp ---EEEEEEETTTTEEEEEE--EEESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEeh--hCCCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 34689999999999875555 33456788999999998877632 3445555
No 469
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.76 E-value=28 Score=33.77 Aligned_cols=171 Identities=13% Similarity=0.176 Sum_probs=87.5
Q ss_pred CceEEEEeeCCCEEEEEecCce------EEEEECCC--C---cE--EEeeec--cCcc-------ceEEEEEeeCCCEEE
Q 008844 175 TPTAACFNKYGDLVYVGNSKGE------ILVIDHKS--N---QI--RALVPV--SGAA-------VIKNIVFSRNGQYLL 232 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~------i~i~d~~~--~---~~--~~~~~~--~~~~-------~i~~l~~s~~g~~l~ 232 (551)
.++.+.+.+++..+++-+.+|. ++.+.+.. + .. ...... .... -.-+|++.++|.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 6788999976666777777777 66666554 1 11 111110 1111 234788877887777
Q ss_pred EeeCC------CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec-ccccccceeeeeeeEEcCCCC
Q 008844 233 TNSND------RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR-EFQDSITKMHWKAPCFSGDGE 305 (551)
Q Consensus 233 t~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~s~dg~ 305 (551)
+.-.+ ..|+.++.. . +.+..+.- + ..+.... .....-.+..+-+++++|+|+
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G-----~~~~~~~v----P-----------~~~~~~~~~~~~~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-G-----RVIRRFPV----P-----------AAFLPDANGTSGRRNNRGFEGLAVSPDGR 159 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-C-----cccceEcc----c-----------cccccccCccccccCCCCeEEEEECCCCC
Confidence 76666 677777611 0 00000000 0 0000000 001222233345899999999
Q ss_pred EEEEeeccC--Ccc---------eEEEEecC----CceeEEE----ec-----CCCceEEEEEecCCCeEEEEc-----C
Q 008844 306 WVIAGSASK--GEH---------KIYIWDRA----GYLVKIL----EG-----PKEALIDLAWHPVHPIIVSVS-----L 356 (551)
Q Consensus 306 ~l~~gs~~~--~dg---------~I~iwd~~----~~~~~~l----~~-----h~~~v~~l~~sp~~~~l~s~s-----~ 356 (551)
.|+++.... .++ .++|+... +.....+ .. ....|..+.+.+++++|+-== .
T Consensus 160 ~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~ 239 (326)
T PF13449_consen 160 TLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGT 239 (326)
T ss_pred EEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCc
Confidence 777766532 121 15555544 3223322 21 245688999999998666421 2
Q ss_pred CCcEEEEecC
Q 008844 357 TGWVYIWAKD 366 (551)
Q Consensus 357 dg~i~iW~~~ 366 (551)
...++|+.+.
T Consensus 240 ~~~~ri~~v~ 249 (326)
T PF13449_consen 240 GNYKRIYRVD 249 (326)
T ss_pred cceEEEEEEE
Confidence 3445555544
No 470
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.59 E-value=56 Score=37.05 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=25.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFE 53 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~ 53 (551)
....++|+|.-.++|.|...|.|.+|-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 45678999999999999999999999654
No 471
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.33 E-value=31 Score=33.89 Aligned_cols=203 Identities=14% Similarity=0.194 Sum_probs=105.5
Q ss_pred EecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCE--EEEEec
Q 008844 116 LHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDL--VYVGNS 193 (551)
Q Consensus 116 ~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--l~~g~~ 193 (551)
.+|......+++.....+.+.+||+.......+......... -...+.+ .|+. |++++.
T Consensus 61 vnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVD-----------------vrygf~l--~g~~vDlavas~ 121 (381)
T PF02333_consen 61 VNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVD-----------------VRYGFPL--NGKTVDLAVASD 121 (381)
T ss_dssp --SS-GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEE-----------------EEEEEEE--TTEEEEEEEEEE
T ss_pred cCCCCcccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceee-----------------eecceec--CCceEEEEEEec
Confidence 345555566889999999999999999887665322110000 1111222 3432 444443
Q ss_pred -C---ceEEEEECC--CCcEEEeeec-----cCccceEEEEEee---CCC-EEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 194 -K---GEILVIDHK--SNQIRALVPV-----SGAAVIKNIVFSR---NGQ-YLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 194 -d---g~i~i~d~~--~~~~~~~~~~-----~~~~~i~~l~~s~---~g~-~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
+ .+|.+|.+. ++.+...... .....++.+|+-. +|. ++++...+|.+..|.+.....+.
T Consensus 122 R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~------ 195 (381)
T PF02333_consen 122 RSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK------ 195 (381)
T ss_dssp -CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS------
T ss_pred CcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc------
Confidence 2 468888664 4433222110 1123477788753 344 56677789999888722111000
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---C---ceeEEE
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---G---YLVKIL 332 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~---~~~~~l 332 (551)
.....++.|.... . ...|.......+|+.+-. +.-|+-|+.. + .++...
T Consensus 196 ----------------v~~~lVR~f~~~s-Q-----~EGCVVDDe~g~LYvgEE---~~GIW~y~Aep~~~~~~~~v~~~ 250 (381)
T PF02333_consen 196 ----------------VSATLVREFKVGS-Q-----PEGCVVDDETGRLYVGEE---DVGIWRYDAEPEGGNDRTLVASA 250 (381)
T ss_dssp ----------------EEEEEEEEEE-SS-------EEEEEEETTTTEEEEEET---TTEEEEEESSCCC-S--EEEEEB
T ss_pred ----------------EeeEEEEEecCCC-c-----ceEEEEecccCCEEEecC---ccEEEEEecCCCCCCcceeeecc
Confidence 0012233343221 2 237888888889999988 6667777765 2 222222
Q ss_pred ec--CCCceEEEEEec--CCC-eEEEEcC-CCcEEEEecCCC
Q 008844 333 EG--PKEALIDLAWHP--VHP-IIVSVSL-TGWVYIWAKDYT 368 (551)
Q Consensus 333 ~~--h~~~v~~l~~sp--~~~-~l~s~s~-dg~i~iW~~~~~ 368 (551)
.+ ....|..|+.-. ++. ||+..+. +++..||+....
T Consensus 251 ~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 251 DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 22 335677777743 333 5555554 889999998754
No 472
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=86.25 E-value=34 Score=33.25 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=38.3
Q ss_pred EEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC--CCeEEEEe
Q 008844 188 VYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN--DRTIRIYD 244 (551)
Q Consensus 188 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~--Dg~i~iwd 244 (551)
++.+..+|.+.-||..+......+ ..-...+.++.||++.+++++-. -+..++|=
T Consensus 192 ~l~g~~~GRl~~YD~~tK~~~VLl--d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi 248 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTKVTKVLL--DGLYFPNGLALSPDGSFVLVAETTTARIKRYWI 248 (376)
T ss_pred eecCCCccceEEecCcccchhhhh--hcccccccccCCCCCCEEEEEeeccceeeeeEe
Confidence 344557899999999887664444 33445677999999999887732 34556773
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.97 E-value=25 Score=31.34 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.1
Q ss_pred CEEEEEeCCCeEEEEeccC--CceeeEeecccccccEEEEEecCCCCEEEEEeC
Q 008844 36 TLLAAGCSDGSCVIWDFET--RGIAKELRDKECVAAITSVCWSKYGHRILVSAA 87 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~ 87 (551)
..|+.+...+.|.+|++.+ ......|.. -+.|..|.++..|+||+|-=.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEe
Confidence 4554445667899999883 345555544 588999999999999998643
No 474
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=85.97 E-value=25 Score=33.52 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=52.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeeccccc-c--cEEEEEecCCCCEEEEEeCCCCEEEEEc
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECV-A--AITSVCWSKYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~-~--~V~~l~~s~~g~~l~s~s~dg~i~vwd~ 96 (551)
.|++|...++|.+|++...-.+|.+.+-.+|+++..+.+.... - +-...+|-.+-+++-.+..+++|.|+|-
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 4788888899999999988899999999999999998765100 0 1112444445555555567888999985
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.60 E-value=33 Score=32.52 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=35.7
Q ss_pred eeEEcCCCCEEEEeeccCCcceEEEEecCC----ceeEEE-ecCC--CceEEEEEec--CCCeEEEE
Q 008844 297 APCFSGDGEWVIAGSASKGEHKIYIWDRAG----YLVKIL-EGPK--EALIDLAWHP--VHPIIVSV 354 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~----~~~~~l-~~h~--~~v~~l~~sp--~~~~l~s~ 354 (551)
.++++++|.+.++--. .+.|..|+..+ +-+..+ .... ..+.++.+.+ ++.+.+.+
T Consensus 190 g~~~D~~G~ly~~~~~---~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVE---QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEETTTEEEEEECC---CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eEEECCCCcEEEecCC---CCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 6788999988888777 78999999984 122222 2222 4678888887 55544444
No 476
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.55 E-value=9.3 Score=37.70 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=43.3
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeccCC--ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC
Q 008844 29 IAFNRRGTLLAAGCSDGSCVIWDFETR--GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 29 l~fs~dg~~latg~~dg~I~iwd~~~~--~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 98 (551)
+-|....+.|++. ..|.+.=|-+... .....+... ..++|.++.||+|.+.|++--.+++|.+++...
T Consensus 28 vFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~-d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~ 97 (657)
T KOG2377|consen 28 VFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMD-DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP 97 (657)
T ss_pred eeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeec-CCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence 3344333444433 3455666655432 223333322 267999999999999999999999999998743
No 477
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.26 E-value=41 Score=33.27 Aligned_cols=219 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeeccccc-ccEEEEEecCCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECV-AAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~-~~V~~l~~s~~g~ 80 (551)
+|.-.|+.++...-..........+.+-.+..+|+ |+.++.+|.+..+|..+|..+...... . -.+..-....++.
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~--~~~~~~~~~v~~~~~ 155 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVG--GSPYYASPPVVGDGT 155 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecC--CCeEEecCcEEcCcE
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeC-CCCcEEEEcCCCceeeeccccCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPL-SSAPMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
.++.. .++.+...+..+|.......... ........|......+++.... ++.+.-++..++...............
T Consensus 156 v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~ 234 (370)
T COG1520 156 VYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRT 234 (370)
T ss_pred EEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcc
Q ss_pred CC--CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC
Q 008844 159 IA--PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN 236 (551)
Q Consensus 159 ~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~ 236 (551)
.. .. .+..-...-++.. +.++.+|.+...|..+++.+..+..........+-..+... .
T Consensus 235 ~~~~~~------------~~~~~~v~v~~~~-~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~------~ 295 (370)
T COG1520 235 AISTTP------------AVDGGPVYVDGGV-YAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAG------A 295 (370)
T ss_pred cccccc------------cccCceEEECCcE-EEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecC------C
Q ss_pred CCeEEEE
Q 008844 237 DRTIRIY 243 (551)
Q Consensus 237 Dg~i~iw 243 (551)
||.+.++
T Consensus 296 dG~v~~~ 302 (370)
T COG1520 296 DGKVYIG 302 (370)
T ss_pred CccEEEE
No 478
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.18 E-value=18 Score=33.10 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=32.1
Q ss_pred eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC---CCCEEEEEcCC
Q 008844 46 SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA---DKSLTLWDVLK 98 (551)
Q Consensus 46 ~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~vwd~~~ 98 (551)
.-.+||+.+++.. .+... ..--+.+-.+.+||++|.+|+. ...+++++...
T Consensus 47 ~s~~yD~~tn~~r-pl~v~-td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 47 HSVEYDPNTNTFR-PLTVQ-TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT 100 (243)
T ss_pred EEEEEecCCCcEE-eccCC-CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCC
Confidence 3568999887653 33222 1333444567889999999876 24577777543
No 479
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.86 E-value=7.7 Score=33.60 Aligned_cols=35 Identities=14% Similarity=0.488 Sum_probs=28.1
Q ss_pred ceEEEEEecCC------CeEEEEcCCCcEEEEecCC--CCcce
Q 008844 338 ALIDLAWHPVH------PIIVSVSLTGWVYIWAKDY--TENWS 372 (551)
Q Consensus 338 ~v~~l~~sp~~------~~l~s~s~dg~i~iW~~~~--~~~~~ 372 (551)
.|.+++|||.| .+||+...+|.|.||.... ...|.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~ 129 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWN 129 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEe
Confidence 68899999965 3889999999999999875 34454
No 480
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.85 E-value=51 Score=33.98 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=75.8
Q ss_pred CCEEEEE---eCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCe
Q 008844 35 GTLLAAG---CSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTP 111 (551)
Q Consensus 35 g~~latg---~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 111 (551)
|-+++++ ...+.+.++|.. |.+...+... ......+...++|.+++... ..+..+|+ .|+.+..+......
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~--~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLD--SGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGY 188 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETT-S-EEEEE-GG--GT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTE
T ss_pred cEEEEeCCCCCCCceEEEECCC-ccEEEEEccC--ccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcc
Confidence 3355555 234556666654 5555554432 11111166788998877665 78899997 47777777665532
Q ss_pred ----eEEEEecCCCCCcEEEEee-------------CCCCcEEEEcCCCceeeeccccCCCCCCCCC--------CCCCC
Q 008844 112 ----LQARLHPGSSTPSLCLACP-------------LSSAPMIVDLSTGSTSILPIAVPDVANGIAP--------SSRNK 166 (551)
Q Consensus 112 ----~~~~~~p~~~~~~~~~~~~-------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 166 (551)
..+...|++. +++.+. ....|..+| .+|+..... ...+.-..... .....
T Consensus 189 ~~~HHD~~~l~nGn---~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~w-d~~d~ld~~~~~~~~~~~~~~~~~ 263 (477)
T PF05935_consen 189 YDFHHDIDELPNGN---LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEW-DFFDHLDPYRDTVLKPYPYGDISG 263 (477)
T ss_dssp E-B-S-EEE-TTS----EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEE-EGGGTS-TT--TTGGT--SSSSS-
T ss_pred cccccccEECCCCC---EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEE-ehHHhCCccccccccccccccccc
Confidence 3455566542 333333 123466667 666544331 11111000000 00000
Q ss_pred CCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeee
Q 008844 167 YSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVP 212 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~ 212 (551)
......=..++++.+.+.. .+|+++-.-..|..+|.+++++...+.
T Consensus 264 ~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 264 SGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 0011111268899999954 555555555689999999999888774
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.78 E-value=20 Score=29.21 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=69.4
Q ss_pred EecCCCCEEEEEeCCCCEEEEEcC--------CCeEEEEEEcCCCeeEEEEecCC-CCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 74 CWSKYGHRILVSAADKSLTLWDVL--------KGEKITRIVLQQTPLQARLHPGS-STPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 74 ~~s~~g~~l~s~s~dg~i~vwd~~--------~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
.|......|+.++.-+.|.|++.. ....+..+.....+.++.-.+-. ....-++..+....+..||+....
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~ 84 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS 84 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc
Confidence 444445567777778888888765 33456677777777776655432 223346666777889999998876
Q ss_pred eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC----CCEEEEEecCceEEEEECCCCcEEEee
Q 008844 145 TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY----GDLVYVGNSKGEILVIDHKSNQIRALV 211 (551)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----g~~l~~g~~dg~i~i~d~~~~~~~~~~ 211 (551)
.....-. +..+.++.+-.- ..++++| .+..|.-||....+...+.
T Consensus 85 d~Fyke~---------------------~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 85 DLFYKEV---------------------PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred hhhhhhC---------------------ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 5433211 115666665332 2344444 3556777776665555443
No 482
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.62 E-value=59 Score=34.50 Aligned_cols=130 Identities=13% Similarity=0.140 Sum_probs=66.9
Q ss_pred cceEEEEEeeCCCEEEEeeC---CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee
Q 008844 217 AVIKNIVFSRNGQYLLTNSN---DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293 (551)
Q Consensus 217 ~~i~~l~~s~~g~~l~t~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 293 (551)
..|..+..|+||..++.-.. .+.|.|=-+.....+. ..+ ............ +.
T Consensus 455 ~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l--------------------~~~~~l~~~l~~-v~-- 510 (599)
T PRK13613 455 HRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSV--------------------EEFRSLAPELED-VT-- 510 (599)
T ss_pred CEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEe--------------------eccEEeccCCCc-cc--
Confidence 47999999999987665443 3556555432221111 000 000111112222 34
Q ss_pred eeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeE-EEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCCCcc
Q 008844 294 HWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVK-ILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 294 ~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~-~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
.+.|..++.+++.+....++..+++.++.|.... ...+.-..+..|+-..+.. .|+.+..++.| |....+..|
T Consensus 511 ---~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v--~~~~~g~~W 585 (599)
T PRK13613 511 ---DMSWAGDSQLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI--VRLSSGLQW 585 (599)
T ss_pred ---eeEEcCCCEEEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe--EEecCCCcc
Confidence 8899999998886644222344554455543222 2223445566677766655 45542444443 323566778
Q ss_pred eeec
Q 008844 372 SAFA 375 (551)
Q Consensus 372 ~~~s 375 (551)
....
T Consensus 586 ~~~~ 589 (599)
T PRK13613 586 QTVV 589 (599)
T ss_pred eEec
Confidence 7543
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.39 E-value=12 Score=42.02 Aligned_cols=145 Identities=16% Similarity=0.170 Sum_probs=84.5
Q ss_pred ecCceEEEEECCCCcEEEeeeccCccceEEEE--------EeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccC
Q 008844 192 NSKGEILVIDHKSNQIRALVPVSGAAVIKNIV--------FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGI 263 (551)
Q Consensus 192 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~--------~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (551)
+.|..+.+|+..++.....+. .-...|..+. |.|.=++|++.+.--.|.|+-+......
T Consensus 96 TiDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~------------ 162 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFT------------ 162 (1311)
T ss_pred EeCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecccc------------
Confidence 347789999999866555543 3334444443 3333355655555566666652111100
Q ss_pred CCCCcceeeeeccceeeeeec-ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---C---c-e-------
Q 008844 264 AEPNGIEKMKMVGSKCLALFR-EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---G---Y-L------- 328 (551)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~---~-~------- 328 (551)
.. ...+. .+.-.+..+.++++....+|+.+++|-. |.|+=.-.+ | + +
T Consensus 163 -------------~~-~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d----g~lyEl~Yq~~~gWf~~rc~Kiclt~ 224 (1311)
T KOG1900|consen 163 -------------GE-LSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD----GNLYELVYQAEDGWFGSRCRKICLTK 224 (1311)
T ss_pred -------------Cc-ccccccceeeecCCceEEEEEeccCCcEEEeecC----CCEEEEEEeccCchhhcccccccCch
Confidence 00 00011 1222233444557787889998888774 544422111 1 1 0
Q ss_pred ---------eEEEe-cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 329 ---------VKILE-GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 329 ---------~~~l~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+..+. .+.++|..++......+|.+-+.-|+|.+|++..
T Consensus 225 s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 225 SVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11122 4577999999988889999999999999999986
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.20 E-value=3.2 Score=25.33 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=16.8
Q ss_pred eeEEcCCCCEEEEeeccCCcceEEEE
Q 008844 297 APCFSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
..+|||||++|+..+...+.|...||
T Consensus 13 ~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 13 SPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CEEEecCCCEEEEEecCCCCCCcCEE
Confidence 67999999999988874311444444
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.85 E-value=22 Score=33.44 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=57.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEe------CCCeEEEEeccCCceeeEeecc--cccccEEEE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGC------SDGSCVIWDFETRGIAKELRDK--ECVAAITSV 73 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~------~dg~I~iwd~~~~~~~~~~~~~--~h~~~V~~l 73 (551)
.|++||+.+.+....-.. -.+.|++|.|..+.++++.|. ....+..||+.+......-.+. .-.++|..+
T Consensus 17 ~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 367899887766554443 458899999987777777764 3456889999876542222211 124788888
Q ss_pred EecC-CCCEEE-EEe-C--CCCEEEEEc
Q 008844 74 CWSK-YGHRIL-VSA-A--DKSLTLWDV 96 (551)
Q Consensus 74 ~~s~-~g~~l~-s~s-~--dg~i~vwd~ 96 (551)
.+.. ++..+. .|. . +..|..||=
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcC
Confidence 8743 333343 333 2 334666653
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.54 E-value=77 Score=35.01 Aligned_cols=241 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE-EcCCCeeEEEEe---cCCCCCcEEEEeeCC
Q 008844 57 IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI-VLQQTPLQARLH---PGSSTPSLCLACPLS 132 (551)
Q Consensus 57 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~---p~~~~~~~~~~~~~~ 132 (551)
.+....|. .+.+..|+.-.....-.....+..+.+--+......... ....++..++|. ........+++.-..
T Consensus 29 i~A~asGe--sg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~ 106 (765)
T PF10214_consen 29 ILAFASGE--SGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTE 106 (765)
T ss_pred EEEEecCC--CCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEEEEcC
Q ss_pred CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEee
Q 008844 133 SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALV 211 (551)
Q Consensus 133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~ 211 (551)
..+.|+...-.+. ...........................+...++|+|.. ..||+-...|...||++ ..
T Consensus 107 ~st~I~~p~~~~~--~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i-------~~ 177 (765)
T PF10214_consen 107 TSTTILRPEYHRV--ISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDI-------KG 177 (765)
T ss_pred CEEEEEEcccccc--cccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEe-------cc
Q ss_pred eccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccc
Q 008844 212 PVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSIT 291 (551)
Q Consensus 212 ~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 291 (551)
..........+.-...|.. ++| ...+
T Consensus 178 ~~~~~~~~~~~~~~~~gsi-----------~~d--------------------------------~~e~----------- 203 (765)
T PF10214_consen 178 RPKRKSSNLRLSRNISGSI-----------IFD--------------------------------PEEL----------- 203 (765)
T ss_pred ccccCCcceeeccCCCccc-----------cCC--------------------------------Cccc-----------
Q ss_pred eeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce--eEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 292 KMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL--VKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 292 ~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~--~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
-.|..+.|.++-+.|+..+. ..+.++|+. ... +.........|.++.-+|..+-.+..-....|...++..
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r----~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNR----SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred -CcceeeEecCCCCEEEEEcC----CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
No 487
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.34 E-value=16 Score=38.46 Aligned_cols=76 Identities=14% Similarity=0.300 Sum_probs=51.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
.-++++.-+|.|+.++.+..||+|++|++...+..+.... ..+-..+.|... -|+++..|..+.-|. ++|...+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~---~~p~~nlv~tnh--gl~~~tsdrr~la~~-~dgvvqq 88 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE---AKPKENLVFTNH--GLVTATSDRRALAWK-EDGVVQQ 88 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh---cCCccceeeecc--ceEEEeccchhheee-ccCcchh
Confidence 4577888899999999999999999999876554222221 234455566543 367777788888886 4454333
Q ss_pred EE
Q 008844 104 RI 105 (551)
Q Consensus 104 ~~ 105 (551)
.+
T Consensus 89 qf 90 (1636)
T KOG3616|consen 89 QF 90 (1636)
T ss_pred hc
Confidence 33
No 488
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.08 E-value=45 Score=33.74 Aligned_cols=30 Identities=13% Similarity=0.429 Sum_probs=25.6
Q ss_pred ceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 338 ALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.|.+|+..+..++|++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 399999999999999999999999999975
No 489
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.06 E-value=7.9 Score=33.52 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=23.7
Q ss_pred cEEEEEecCCC------CEEEEEeCCCCEEEEEcC
Q 008844 69 AITSVCWSKYG------HRILVSAADKSLTLWDVL 97 (551)
Q Consensus 69 ~V~~l~~s~~g------~~l~s~s~dg~i~vwd~~ 97 (551)
.|.+++|||.| -+|++...++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 78999999954 367777889999999865
No 490
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.02 E-value=6.8 Score=24.13 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=27.7
Q ss_pred CCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEE
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAW 344 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~ 344 (551)
|++++|+++... .+.|.++|.. +..+..+... .....++|
T Consensus 1 pd~~~lyv~~~~--~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSG--SNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCC--CCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 578888877653 6899999998 7777777653 33344444
No 491
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.92 E-value=4.7 Score=24.57 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=20.4
Q ss_pred ecCCCceEEEEEecCCCeEEEEcC-C--CcEEEE
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSL-T--GWVYIW 363 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~-d--g~i~iW 363 (551)
......-....|+|||+.|+-++. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334556778899999997776664 5 666665
No 492
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=82.70 E-value=95 Score=35.47 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=12.2
Q ss_pred eeEEcCCCCEEEEeec
Q 008844 297 APCFSGDGEWVIAGSA 312 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~ 312 (551)
+++++++|.+.++-+.
T Consensus 597 ~Iavg~~G~lyvaEsD 612 (1899)
T KOG4659|consen 597 DIAVGTDGALYVAESD 612 (1899)
T ss_pred ceeecCCceEEEEecc
Confidence 7889998887766654
No 493
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=82.64 E-value=65 Score=33.52 Aligned_cols=281 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccc-------cccEEEEEecC-----CCCEEEEEeCCCC----EE
Q 008844 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKEC-------VAAITSVCWSK-----YGHRILVSAADKS----LT 92 (551)
Q Consensus 29 l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h-------~~~V~~l~~s~-----~g~~l~s~s~dg~----i~ 92 (551)
++..|.|+.++.+..+|.+.||-+.. ..........+ ...|..++|.. +...|+.--.+.. +.
T Consensus 49 l~vDP~~R~i~v~a~e~~~~v~~l~~-~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~ 127 (504)
T PF10433_consen 49 LAVDPSGRCIAVSAYEGNFLVYPLNR-SLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLV 127 (504)
T ss_dssp EEE-TTSSEEEEEEBTTEEEEEE-SS-----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEE
T ss_pred EEECCcCCEEEEEecCCeEEEEEecc-cccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeE
Q ss_pred EEEcCCCeEEEEEEcCCCee---------EEEEecCCCCCcEEEEeeCCCCcEE-EEcCCCceeeeccccC----CCCCC
Q 008844 93 LWDVLKGEKITRIVLQQTPL---------QARLHPGSSTPSLCLACPLSSAPMI-VDLSTGSTSILPIAVP----DVANG 158 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~---------~~~~~p~~~~~~~~~~~~~~~~i~i-~d~~~~~~~~~~~~~~----~~~~~ 158 (551)
++.+.....+.......... ...+.|-......+++++..-.++. -+...+.......... ..
T Consensus 128 ~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~--- 204 (504)
T PF10433_consen 128 TYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSPPSSSSS--- 204 (504)
T ss_dssp EEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEESSEEEEEE------TTEEEEE--H-HHHTS---
T ss_pred EEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECCEEEEEecccccccccccccccCCccCCCc---
Q ss_pred CCCCCCCCCCCCCCCCCceEEEE-------eeCCCEEEEEecCceEEEEECCCCc-EEEeeeccC-ccceEEEEEeeCC-
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACF-------NKYGDLVYVGNSKGEILVIDHKSNQ-IRALVPVSG-AAVIKNIVFSRNG- 228 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~-------s~~g~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~-~~~i~~l~~s~~g- 228 (551)
-+++..+ ..++..++.+..+|.++...+.... .+....... ....+++++..+|
T Consensus 205 ----------------~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~ 268 (504)
T PF10433_consen 205 ----------------LWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGG 268 (504)
T ss_dssp -----------------EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT-
T ss_pred ----------------eEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCC
Q ss_pred CEEEEeeC--CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCC-
Q 008844 229 QYLLTNSN--DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGE- 305 (551)
Q Consensus 229 ~~l~t~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~- 305 (551)
.+|+.|+. |+.+..|. ...+..+..+...-.-..+.-+.....+.
T Consensus 269 d~lf~gs~~gds~l~~~~--------------------------------~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~ 316 (504)
T PF10433_consen 269 DYLFVGSEFGDSQLLQIS--------------------------------LSNLEVLDSLPNWGPIVDFCVVDSSNSGQP 316 (504)
T ss_dssp -EEEEEESSS-EEEEEEE--------------------------------SESEEEEEEE----SEEEEEEE-TSSSSS-
T ss_pred EEEEEEEecCCcEEEEEe--------------------------------CCCcEEEEeccCcCCccceEEeccccCCCC
Q ss_pred ------EEEEeeccCCcceEEEEecC-Cce--eEEEecCCCceEEEEEecC----CCeEEEEcCCCcEEE
Q 008844 306 ------WVIAGSASKGEHKIYIWDRA-GYL--VKILEGPKEALIDLAWHPV----HPIIVSVSLTGWVYI 362 (551)
Q Consensus 306 ------~l~~gs~~~~dg~I~iwd~~-~~~--~~~l~~h~~~v~~l~~sp~----~~~l~s~s~dg~i~i 362 (551)
.|++++..+.+|.|++.... +-. ......-.+ +..+---+. +.+|+.+..+.+..+
T Consensus 317 ~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~T~vl 385 (504)
T PF10433_consen 317 SNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPNETRVL 385 (504)
T ss_dssp ------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESSEEEEE
T ss_pred cccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCCceEEE
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.51 E-value=42 Score=31.63 Aligned_cols=55 Identities=9% Similarity=0.180 Sum_probs=39.8
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe------CCCCEEEEEcCCCeE
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA------ADKSLTLWDVLKGEK 101 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s------~dg~i~vwd~~~~~~ 101 (551)
..|++||+.+.+....-.+- .+.|++|.|..+..+++.|. ....+..||+.+...
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i--~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGI--SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeecCCCCc--eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 35999999887766555443 78999999986666666664 345688899876643
No 495
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.07 E-value=0.31 Score=47.89 Aligned_cols=145 Identities=11% Similarity=0.123 Sum_probs=93.9
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEE-EeeCCCeEEEEeCcCCccccc
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLL-TNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
......|.+.+.-+++++.+..+..||-....... . ...+....++|..++..++ .+-..+.+.+|++....
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey---- 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILE-L--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY---- 108 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcceecc-c--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh----
Confidence 44566788888779999989888999865433322 2 3345566788888876554 44567899999932211
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
...+..-..+... -+.|++.+..++.|.. .+.+.|++.. .+.+-..
T Consensus 109 -----------------------tqqLE~gg~~s~s-------ll~wsKg~~el~ig~~---~gn~viynhgtsR~iiv~ 155 (615)
T KOG2247|consen 109 -----------------------TQQLESGGTSSKS-------LLAWSKGTPELVIGNN---AGNIVIYNHGTSRRIIVM 155 (615)
T ss_pred -----------------------HHHHhccCcchHH-------HHhhccCCcccccccc---ccceEEEeccchhhhhhh
Confidence 0011111112222 2478888888888887 8999999988 5444444
Q ss_pred ecCCCceEEEEEecCCCeEEEEcCCCcE
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSLTGWV 360 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i 360 (551)
..|...+++++|.+.+. .+.++.|..+
T Consensus 156 Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 156 GKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred cccccceeEEEecccce-eeecCcHHHH
Confidence 44889999999988764 3444444433
No 496
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.53 E-value=45 Score=30.91 Aligned_cols=193 Identities=16% Similarity=0.100 Sum_probs=109.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
..-..++-.|||..-+++...|.|--.|..+|+....-.+. ...-..|..-|||..-++-+.. -|.-.|-++.. +.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~--Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e-vt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS--GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE-VT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCC--CCCCceEEECCCCCeeEecCcc-eeEEecCcccc-eE
Confidence 34567778888988888888888888888888866554443 4556667777777655553322 34444443333 22
Q ss_pred EEEcC-----CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 104 RIVLQ-----QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 104 ~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
++... .......|.+.+. +-+++. .|.---.|-.++....++.. .....+.
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~---lWFt~q-~G~yGrLdPa~~~i~vfpaP--------------------qG~gpyG 193 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGN---LWFTGQ-IGAYGRLDPARNVISVFPAP--------------------QGGGPYG 193 (353)
T ss_pred EeecccccCCCcccceeeCCCcc---EEEeec-cccceecCcccCceeeeccC--------------------CCCCCcc
Confidence 33222 1223344544432 222222 21111122222222221111 1116678
Q ss_pred EEEeeCCCEEEEEecCceEEEEECCCCcEEEeee-ccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 179 ACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP-VSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
+|.+|+|..-++......|...|..++....... ......-..+--+|.|+.-++....+.+..||
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfd 260 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFD 260 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeC
Confidence 9999999988887778888888887774322221 11133445566677888878777777887777
No 497
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=80.83 E-value=58 Score=31.80 Aligned_cols=179 Identities=12% Similarity=0.029 Sum_probs=0.0
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC-------------------------------------
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD------------------------------------- 44 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d------------------------------------- 44 (551)
.+..||+.+......-........-.+.+-.-++++.+.|+.+
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Q ss_pred --CeEEEEeccCCceeeEeeccccc-ccEEEEEecCCCCEEEEEeCC------CCEEEEEcCCCeEEEEEEcCCCeeEEE
Q 008844 45 --GSCVIWDFETRGIAKELRDKECV-AAITSVCWSKYGHRILVSAAD------KSLTLWDVLKGEKITRIVLQQTPLQAR 115 (551)
Q Consensus 45 --g~I~iwd~~~~~~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~ 115 (551)
..|.+||..+.+....-... . .........-++++++.|+.+ ..+.++++............-+.....
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~~p--~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGENP--FLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred ccceEEEEECCCCceeECccCC--CCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Q ss_pred EecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-
Q 008844 116 LHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK- 194 (551)
Q Consensus 116 ~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d- 194 (551)
.... ...+.+...+++++++|+.+
T Consensus 244 ~~~~-------------------------------------------------------~~~~~a~~~~~~Iyv~GG~~~ 268 (346)
T TIGR03547 244 SQEG-------------------------------------------------------LAGAFAGISNGVLLVAGGANF 268 (346)
T ss_pred cccc-------------------------------------------------------ccEEeeeEECCEEEEeecCCC
Q ss_pred ---------------------ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC
Q 008844 195 ---------------------GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR 238 (551)
Q Consensus 195 ---------------------g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg 238 (551)
..+.+||..+.+-..... .....-...+..-+++++++|+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~-lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 269 PGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK-LPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred CCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC-CCCCceeeEEEEcCCEEEEEeccCC
No 498
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.69 E-value=8.6 Score=37.86 Aligned_cols=173 Identities=9% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEecc----CCceeeEeecccccccEE-EEEecCCCCEEEE
Q 008844 10 QGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFE----TRGIAKELRDKECVAAIT-SVCWSKYGHRILV 84 (551)
Q Consensus 10 ~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~----~~~~~~~~~~~~h~~~V~-~l~~s~~g~~l~s 84 (551)
+++..+.+.. ....|..+-..|||+.|+.-+. ..+.|+++. ..+.+...........|+ ++.....|..|+.
T Consensus 209 q~e~i~~L~~--~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv 285 (733)
T COG4590 209 QQEIIRLLSV--PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLV 285 (733)
T ss_pred hhhhhhhcCC--CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEE
Q ss_pred EeCCCCEEEE----EcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 85 SAADKSLTLW----DVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 85 ~s~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
+..||.|.-| +-..........+.-.+..+.+..-..+...+++-...|.+.++...............
T Consensus 286 ~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~------- 358 (733)
T COG4590 286 VHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ------- 358 (733)
T ss_pred EcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-------
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~ 207 (551)
.+..++++|.+.++++-. .|.|+++.+.+..+
T Consensus 359 --------------~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 359 --------------APQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred --------------CcceeeeCcccchheeec-CCceEEEEecCCCC
No 499
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.53 E-value=66 Score=32.18 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=82.9
Q ss_pred ceEEEEeeCCCEEEEEecCceEE-EEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 176 PTAACFNKYGDLVYVGNSKGEIL-VIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
...+..+++|.++++|. .|.+. -||--. ..-..........++.+.|.+++..++++ ..|.+..-+ ..
T Consensus 241 f~~v~~~~dG~~~~vg~-~G~~~~s~d~G~-~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~------- 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS-RGNFYLTWEPGQ-PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSK-GT------- 309 (398)
T ss_pred eeeEEEcCCCCEEEEEC-CccEEEecCCCC-cceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEec-CC-------
Confidence 34455677777776665 44433 333221 11122222456778999999999877766 556654432 00
Q ss_pred hhhhhhccCCCCCcceeeeeccceee--eeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEE
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCL--ALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKIL 332 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l 332 (551)
+... ..+...........+..+.|.+++..+++|.. |.|+...-.|+.....
T Consensus 310 ----------------------G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~----G~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 310 ----------------------GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS----GILLRSTDGGKSWKRD 363 (398)
T ss_pred ----------------------CCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC----CcEEEeCCCCcceeEc
Confidence 1000 01111111101112237889999988888874 7777664446654444
Q ss_pred e---cCCCceEEEEEecCCCeEEEEcCCCcEEEE
Q 008844 333 E---GPKEALIDLAWHPVHPIIVSVSLTGWVYIW 363 (551)
Q Consensus 333 ~---~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW 363 (551)
. .-...++.+.|.++++.++++. +|.|.-|
T Consensus 364 ~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 364 KGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred cccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence 3 2245688999987776666654 7776654
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.48 E-value=19 Score=27.13 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=29.4
Q ss_pred CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe
Q 008844 44 DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA 86 (551)
Q Consensus 44 dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s 86 (551)
+|.+..||..+++....+.+- .-.+.|++++|+.+|+.+-
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L---~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGL---YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEE---SSEEEEEE-TTSSEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCC---CccCeEEEcCCCCEEEEEe
Confidence 578999999988765555543 4678899999999887764
Done!