Query 008844
Match_columns 551
No_of_seqs 875 out of 2377
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 13:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.6E-43 8.9E-48 354.8 38.8 283 20-365 105-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 7E-43 2.4E-47 339.5 39.5 285 21-366 30-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 7.9E-42 2.7E-46 335.2 43.1 280 21-364 53-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 5.8E-41 2E-45 323.6 38.6 284 22-367 12-302 (304)
5 3iz6_a 40S ribosomal protein R 100.0 6.3E-42 2.1E-46 341.2 31.2 311 5-369 50-377 (380)
6 4ery_A WD repeat-containing pr 100.0 6.4E-40 2.2E-44 317.7 43.3 290 17-366 17-311 (312)
7 1nr0_A Actin interacting prote 100.0 3E-40 1E-44 349.8 44.6 355 3-384 41-554 (611)
8 2pbi_B Guanine nucleotide-bind 100.0 5E-40 1.7E-44 324.0 42.0 282 22-364 63-354 (354)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.3E-40 1.1E-44 324.3 38.7 306 22-370 14-338 (345)
10 1nr0_A Actin interacting prote 100.0 1.4E-40 4.8E-45 352.3 36.7 323 2-366 171-610 (611)
11 1erj_A Transcriptional repress 100.0 7.9E-40 2.7E-44 327.6 39.4 298 20-367 61-389 (393)
12 3frx_A Guanine nucleotide-bind 100.0 5.6E-39 1.9E-43 311.9 41.0 281 22-368 16-318 (319)
13 2xzm_R RACK1; ribosome, transl 100.0 4.8E-39 1.7E-43 315.8 39.5 284 22-368 20-341 (343)
14 4gqb_B Methylosome protein 50; 100.0 2.4E-39 8.1E-44 317.1 35.2 282 22-368 29-332 (344)
15 3zwl_B Eukaryotic translation 100.0 2.1E-38 7.4E-43 313.8 41.6 308 10-368 19-347 (369)
16 4g56_B MGC81050 protein; prote 100.0 8.3E-40 2.9E-44 322.7 31.1 285 22-368 41-344 (357)
17 4aow_A Guanine nucleotide-bind 100.0 7.4E-38 2.5E-42 306.6 41.6 285 21-369 36-339 (340)
18 2ymu_A WD-40 repeat protein; u 100.0 5E-38 1.7E-42 331.1 43.0 310 2-383 244-566 (577)
19 2hes_X YDR267CP; beta-propelle 100.0 8.6E-38 2.9E-42 305.1 39.6 294 22-367 13-328 (330)
20 2ymu_A WD-40 repeat protein; u 100.0 6.9E-38 2.3E-42 330.0 40.8 291 3-364 286-577 (577)
21 1r5m_A SIR4-interacting protei 100.0 9.3E-38 3.2E-42 315.5 36.4 299 2-366 69-424 (425)
22 4a11_B DNA excision repair pro 100.0 4.1E-37 1.4E-41 309.1 37.8 313 3-369 25-367 (408)
23 1sq9_A Antiviral protein SKI8; 100.0 2.5E-37 8.5E-42 309.9 35.5 292 21-368 14-396 (397)
24 1gxr_A ESG1, transducin-like e 100.0 2.5E-36 8.6E-41 295.1 41.4 286 16-366 44-336 (337)
25 3ei3_B DNA damage-binding prot 100.0 3E-37 1E-41 307.9 35.2 285 21-367 71-382 (383)
26 2pm9_A Protein WEB1, protein t 100.0 1.7E-38 5.7E-43 320.4 24.6 312 2-368 46-415 (416)
27 1vyh_C Platelet-activating fac 100.0 6.1E-37 2.1E-41 308.2 35.0 259 2-325 131-410 (410)
28 1k8k_C P40, ARP2/3 complex 41 100.0 7.4E-37 2.5E-41 303.4 34.6 288 22-369 7-363 (372)
29 3dm0_A Maltose-binding peripla 100.0 2.4E-36 8.1E-41 325.1 40.6 284 21-366 380-692 (694)
30 2pm9_A Protein WEB1, protein t 100.0 2.9E-37 9.8E-42 311.4 30.6 299 22-369 11-339 (416)
31 1r5m_A SIR4-interacting protei 100.0 3.6E-36 1.2E-40 303.8 37.4 314 5-369 29-363 (425)
32 4e54_B DNA damage-binding prot 100.0 4.6E-37 1.6E-41 311.9 30.7 294 22-369 118-432 (435)
33 3gre_A Serine/threonine-protei 100.0 4.5E-37 1.6E-41 312.3 30.6 323 5-364 47-437 (437)
34 3i2n_A WD repeat-containing pr 100.0 4.1E-36 1.4E-40 296.2 36.3 293 22-369 17-355 (357)
35 3ow8_A WD repeat-containing pr 100.0 2.7E-36 9.2E-41 293.0 34.3 260 2-324 59-319 (321)
36 4gga_A P55CDC, cell division c 100.0 1E-35 3.4E-40 300.7 38.4 280 26-368 108-396 (420)
37 2ynn_A Coatomer subunit beta'; 100.0 1.6E-35 5.4E-40 285.6 37.9 255 56-371 4-263 (304)
38 3k26_A Polycomb protein EED; W 100.0 1.5E-36 5.2E-41 300.3 31.1 302 21-366 16-365 (366)
39 4gqb_B Methylosome protein 50; 100.0 7.3E-36 2.5E-40 292.3 35.4 244 22-325 81-330 (344)
40 4ggc_A P55CDC, cell division c 100.0 2.1E-35 7.1E-40 286.3 38.3 282 26-368 28-316 (318)
41 3odt_A Protein DOA1; ubiquitin 100.0 2.7E-35 9.3E-40 284.7 38.9 289 7-369 3-298 (313)
42 2pm7_B Protein transport prote 100.0 5.1E-36 1.7E-40 288.0 33.2 251 21-371 7-289 (297)
43 3vl1_A 26S proteasome regulato 100.0 2.3E-35 7.9E-40 297.9 38.4 321 2-367 79-419 (420)
44 3mkq_A Coatomer beta'-subunit; 100.0 5.9E-35 2E-39 320.4 39.0 301 22-383 12-318 (814)
45 3bg1_A Protein SEC13 homolog; 100.0 6.6E-36 2.3E-40 289.8 27.4 252 21-372 11-298 (316)
46 3dwl_C Actin-related protein 2 100.0 8.1E-37 2.8E-41 304.1 21.1 287 22-365 10-377 (377)
47 1got_B GT-beta; complex (GTP-b 100.0 8.9E-35 3E-39 285.0 35.2 257 2-323 78-340 (340)
48 3sfz_A APAF-1, apoptotic pepti 100.0 9E-35 3.1E-39 333.3 40.8 357 2-369 638-1036(1249)
49 1gxr_A ESG1, transducin-like e 100.0 3.5E-35 1.2E-39 286.9 31.8 288 20-370 6-299 (337)
50 2j04_B YDR362CP, TAU91; beta p 100.0 7.7E-36 2.6E-40 306.9 26.3 307 3-367 185-517 (524)
51 4h5i_A Guanine nucleotide-exch 100.0 2.3E-35 7.8E-40 291.8 28.6 285 24-367 15-343 (365)
52 4aez_A CDC20, WD repeat-contai 100.0 1.8E-34 6.3E-39 289.6 35.0 279 26-370 96-383 (401)
53 3f3f_A Nucleoporin SEH1; struc 100.0 1.8E-34 6.2E-39 282.8 32.8 252 22-374 10-344 (351)
54 1pgu_A Actin interacting prote 100.0 3.3E-34 1.1E-38 304.1 37.2 318 2-367 184-614 (615)
55 4g56_B MGC81050 protein; prote 100.0 1.3E-34 4.5E-39 285.5 31.0 268 3-330 72-349 (357)
56 2oaj_A Protein SNI1; WD40 repe 100.0 3.2E-34 1.1E-38 314.8 37.0 214 16-246 10-241 (902)
57 1erj_A Transcriptional repress 100.0 7.6E-34 2.6E-38 284.1 36.4 269 2-325 86-388 (393)
58 2oaj_A Protein SNI1; WD40 repe 100.0 2.9E-34 1E-38 315.1 36.1 354 2-365 121-659 (902)
59 1pgu_A Actin interacting prote 100.0 1E-33 3.5E-38 300.3 39.2 330 2-368 143-573 (615)
60 3dw8_B Serine/threonine-protei 100.0 2.8E-34 9.5E-39 292.4 33.4 293 20-365 25-444 (447)
61 1p22_A F-BOX/WD-repeat protein 100.0 1E-33 3.5E-38 287.4 37.3 274 22-369 132-416 (435)
62 3sfz_A APAF-1, apoptotic pepti 100.0 8.3E-34 2.8E-38 325.4 40.8 291 16-367 608-913 (1249)
63 3iz6_a 40S ribosomal protein R 100.0 3E-34 1E-38 285.8 31.8 286 45-384 46-362 (380)
64 2pbi_B Guanine nucleotide-bind 100.0 1.1E-33 3.7E-38 278.7 35.2 260 2-323 87-354 (354)
65 3frx_A Guanine nucleotide-bind 100.0 1.1E-33 3.7E-38 274.7 34.6 261 2-325 41-316 (319)
66 3jrp_A Fusion protein of prote 100.0 7.3E-34 2.5E-38 282.4 34.2 258 14-373 4-293 (379)
67 3vl1_A 26S proteasome regulato 100.0 4.4E-34 1.5E-38 288.6 32.1 280 26-368 59-366 (420)
68 3mmy_A MRNA export factor; mRN 100.0 2.2E-33 7.7E-38 277.6 35.7 285 21-367 37-346 (368)
69 3v7d_B Cell division control p 100.0 2.1E-32 7.2E-37 280.1 42.9 301 22-372 120-426 (464)
70 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-33 1.4E-37 305.7 40.2 317 2-383 36-409 (814)
71 1yfq_A Cell cycle arrest prote 100.0 1E-33 3.6E-38 277.4 31.6 281 21-364 9-321 (342)
72 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-32 5E-37 279.7 40.0 289 2-367 140-442 (445)
73 4ery_A WD repeat-containing pr 100.0 5E-33 1.7E-37 269.2 34.5 262 2-325 46-311 (312)
74 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.7E-33 1.3E-37 274.0 33.5 278 2-330 39-340 (345)
75 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-32 5.3E-37 279.5 38.8 273 22-371 117-395 (445)
76 3v7d_B Cell division control p 100.0 1.3E-32 4.6E-37 281.6 37.7 292 2-365 143-461 (464)
77 2hes_X YDR267CP; beta-propelle 100.0 2.7E-32 9.3E-37 266.1 34.2 265 2-325 35-327 (330)
78 2xzm_R RACK1; ribosome, transl 100.0 1.5E-32 5.3E-37 269.4 32.4 273 2-325 50-339 (343)
79 4gga_A P55CDC, cell division c 100.0 9.4E-32 3.2E-36 271.6 35.7 278 2-341 126-411 (420)
80 3vu4_A KMHSV2; beta-propeller 100.0 5.8E-32 2E-36 266.5 31.2 274 22-369 18-338 (355)
81 4aez_A CDC20, WD repeat-contai 100.0 3.9E-31 1.3E-35 265.3 36.2 266 2-332 114-387 (401)
82 2j04_B YDR362CP, TAU91; beta p 100.0 5.3E-33 1.8E-37 285.8 22.4 250 22-367 132-428 (524)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 4.6E-32 1.6E-36 272.2 28.5 264 2-369 58-344 (402)
84 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8E-31 2.7E-35 267.2 36.8 289 24-367 5-391 (450)
85 3jro_A Fusion protein of prote 100.0 3.7E-32 1.3E-36 294.3 28.3 251 22-372 8-290 (753)
86 3k26_A Polycomb protein EED; W 100.0 6.7E-32 2.3E-36 266.9 27.7 282 3-325 46-365 (366)
87 2xyi_A Probable histone-bindin 100.0 1E-31 3.5E-36 272.1 28.9 255 17-367 122-410 (430)
88 1sq9_A Antiviral protein SKI8; 100.0 2.5E-31 8.4E-36 266.2 29.0 263 2-325 37-394 (397)
89 3dm0_A Maltose-binding peripla 100.0 1E-30 3.4E-35 281.3 34.2 266 2-325 406-692 (694)
90 3zwl_B Eukaryotic translation 100.0 1.3E-30 4.6E-35 257.7 32.2 261 2-328 55-349 (369)
91 3ei3_B DNA damage-binding prot 100.0 1.1E-30 3.8E-35 260.3 31.3 272 52-383 60-369 (383)
92 1l0q_A Surface layer protein; 100.0 1.3E-29 4.4E-34 253.3 38.6 312 2-382 13-363 (391)
93 3i2n_A WD repeat-containing pr 100.0 4.7E-31 1.6E-35 259.9 27.6 282 2-325 45-352 (357)
94 3bws_A Protein LP49; two-domai 100.0 4.6E-30 1.6E-34 260.2 35.3 287 20-367 119-432 (433)
95 3gre_A Serine/threonine-protei 100.0 2.3E-31 7.7E-36 270.3 24.9 292 30-375 34-367 (437)
96 4e54_B DNA damage-binding prot 100.0 2.4E-31 8.2E-36 269.8 24.5 268 2-328 143-433 (435)
97 4aow_A Guanine nucleotide-bind 100.0 1.5E-29 5E-34 247.5 36.0 253 53-369 26-288 (340)
98 1k8k_C P40, ARP2/3 complex 41 100.0 4.1E-30 1.4E-34 254.8 32.4 261 66-367 7-274 (372)
99 2j04_A TAU60, YPL007P, hypothe 100.0 2.9E-31 9.9E-36 266.1 24.0 281 23-383 15-309 (588)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 4.5E-30 1.5E-34 257.7 31.1 243 25-370 36-302 (402)
101 3dw8_B Serine/threonine-protei 100.0 5.8E-30 2E-34 260.5 32.1 269 66-370 27-376 (447)
102 1l0q_A Surface layer protein; 100.0 5.9E-29 2E-33 248.5 38.1 273 36-372 3-280 (391)
103 4ggc_A P55CDC, cell division c 100.0 2.6E-29 9E-34 243.3 34.1 262 2-325 46-314 (318)
104 3odt_A Protein DOA1; ubiquitin 100.0 8.4E-29 2.9E-33 239.0 36.3 247 56-371 9-259 (313)
105 2pm7_B Protein transport prote 100.0 1.4E-29 4.9E-34 243.0 29.2 204 65-368 7-239 (297)
106 3lrv_A PRE-mRNA-splicing facto 100.0 6.2E-30 2.1E-34 250.9 26.8 270 30-367 43-333 (343)
107 3dwl_C Actin-related protein 2 100.0 6.2E-31 2.1E-35 261.5 18.6 259 67-366 11-280 (377)
108 4h5i_A Guanine nucleotide-exch 100.0 9.4E-30 3.2E-34 251.5 26.0 261 3-325 45-342 (365)
109 4a11_B DNA excision repair pro 100.0 7.1E-29 2.4E-33 248.9 32.6 317 2-367 67-405 (408)
110 2j04_A TAU60, YPL007P, hypothe 100.0 3.3E-30 1.1E-34 258.4 20.7 265 4-356 67-350 (588)
111 1yfq_A Cell cycle arrest prote 100.0 4.4E-29 1.5E-33 244.4 28.3 249 65-375 9-290 (342)
112 4gq1_A NUP37; propeller, trans 100.0 9.5E-30 3.3E-34 254.3 22.6 254 29-366 95-388 (393)
113 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-28 5.7E-33 248.9 31.1 275 2-345 154-433 (435)
114 3mmy_A MRNA export factor; mRN 100.0 1.4E-28 4.8E-33 243.1 28.9 256 2-323 65-343 (368)
115 3bg1_A Protein SEC13 homolog; 100.0 4.3E-29 1.5E-33 241.8 24.0 220 65-383 11-279 (316)
116 1nir_A Nitrite reductase; hemo 100.0 2.4E-27 8.4E-32 245.6 37.1 324 2-380 160-533 (543)
117 2w18_A PALB2, fancn, partner a 100.0 1.5E-27 5.1E-32 224.9 31.1 252 26-365 42-355 (356)
118 3vu4_A KMHSV2; beta-propeller 100.0 5.9E-28 2E-32 237.8 29.3 262 49-368 3-272 (355)
119 3jrp_A Fusion protein of prote 100.0 5.1E-28 1.7E-32 240.2 28.4 226 56-383 2-273 (379)
120 3f3f_A Nucleoporin SEH1; struc 100.0 6.4E-28 2.2E-32 236.1 24.1 268 2-332 34-344 (351)
121 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-28 6.3E-33 240.4 18.5 242 73-369 42-294 (343)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.5E-27 2.2E-31 238.3 30.6 239 67-365 4-337 (450)
123 2w18_A PALB2, fancn, partner a 100.0 1.1E-26 3.9E-31 218.9 25.6 201 23-324 111-355 (356)
124 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.7E-26 5.8E-31 232.1 27.4 284 2-349 94-410 (415)
125 3bws_A Protein LP49; two-domai 100.0 7.8E-26 2.7E-30 229.0 31.8 259 2-325 145-431 (433)
126 3jro_A Fusion protein of prote 99.9 4.3E-26 1.5E-30 246.7 26.0 219 65-383 7-271 (753)
127 2xyi_A Probable histone-bindin 99.9 9.7E-26 3.3E-30 228.1 26.5 234 2-325 152-409 (430)
128 1nir_A Nitrite reductase; hemo 99.9 4.5E-25 1.6E-29 228.6 32.0 290 30-370 144-461 (543)
129 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-25 5E-30 243.1 29.6 316 23-384 36-442 (741)
130 4gq1_A NUP37; propeller, trans 99.9 1.9E-25 6.4E-30 223.1 28.0 201 171-384 134-377 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.8E-25 6.3E-30 224.6 26.9 281 24-369 63-389 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 3.8E-24 1.3E-28 232.0 28.6 305 2-367 65-459 (741)
133 1k32_A Tricorn protease; prote 99.9 5.4E-24 1.8E-28 238.9 30.5 330 2-383 34-488 (1045)
134 3u4y_A Uncharacterized protein 99.9 7.6E-23 2.6E-27 199.1 33.4 277 29-369 3-306 (331)
135 3u4y_A Uncharacterized protein 99.9 7.8E-23 2.7E-27 199.1 33.2 290 2-348 21-326 (331)
136 1ri6_A Putative isomerase YBHE 99.9 5.9E-23 2E-27 200.7 31.8 282 37-366 7-307 (343)
137 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-23 4.5E-28 226.5 28.6 304 3-369 46-437 (706)
138 3vgz_A Uncharacterized protein 99.9 4.9E-22 1.7E-26 195.1 35.7 273 22-358 39-335 (353)
139 3o4h_A Acylamino-acid-releasin 99.9 3.9E-23 1.3E-27 217.6 28.4 277 22-367 20-315 (582)
140 2ojh_A Uncharacterized protein 99.9 4.8E-23 1.6E-27 196.5 26.2 254 40-357 17-292 (297)
141 1ri6_A Putative isomerase YBHE 99.9 2.8E-22 9.5E-27 195.8 32.1 290 3-349 17-335 (343)
142 1xfd_A DIP, dipeptidyl aminope 99.9 9E-24 3.1E-28 228.4 23.2 315 25-383 18-426 (723)
143 2z3z_A Dipeptidyl aminopeptida 99.9 2.5E-22 8.6E-27 216.5 30.5 308 26-384 28-418 (706)
144 1pby_B Quinohemoprotein amine 99.9 3.2E-22 1.1E-26 194.9 27.0 266 36-371 2-314 (337)
145 3hfq_A Uncharacterized protein 99.9 1.3E-21 4.4E-26 191.9 30.0 277 4-366 21-316 (347)
146 1xfd_A DIP, dipeptidyl aminope 99.9 4.2E-22 1.4E-26 215.3 28.2 313 2-368 38-444 (723)
147 2ojh_A Uncharacterized protein 99.9 3.6E-22 1.2E-26 190.4 21.5 250 2-313 23-292 (297)
148 1pby_B Quinohemoprotein amine 99.9 1.4E-21 4.7E-26 190.4 25.3 266 2-336 12-321 (337)
149 1jmx_B Amine dehydrogenase; ox 99.9 7.6E-21 2.6E-25 186.2 30.0 271 28-372 4-330 (349)
150 1k32_A Tricorn protease; prote 99.9 1.5E-21 5.3E-26 219.0 26.8 278 20-366 200-501 (1045)
151 3pe7_A Oligogalacturonate lyas 99.9 3.2E-21 1.1E-25 192.1 26.1 304 6-366 15-381 (388)
152 3vgz_A Uncharacterized protein 99.9 3.2E-20 1.1E-24 182.1 31.5 267 67-381 40-328 (353)
153 3scy_A Hypothetical bacterial 99.9 5.7E-19 1.9E-23 174.0 36.7 286 34-366 12-336 (361)
154 1jof_A Carboxy-CIS,CIS-muconat 99.9 5.9E-20 2E-24 181.3 27.2 261 24-368 40-342 (365)
155 3scy_A Hypothetical bacterial 99.9 1.7E-19 5.9E-24 177.7 30.5 282 7-345 35-360 (361)
156 1z68_A Fibroblast activation p 99.9 9.6E-21 3.3E-25 204.5 20.7 296 28-367 20-391 (719)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 1.3E-19 4.5E-24 182.5 22.5 251 24-367 37-333 (434)
158 4a5s_A Dipeptidyl peptidase 4 99.8 6.4E-19 2.2E-23 190.5 26.7 291 25-355 18-381 (740)
159 1z68_A Fibroblast activation p 99.8 8.8E-20 3E-24 197.0 19.9 311 2-370 37-446 (719)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 2.6E-18 9E-23 173.0 28.0 160 22-246 91-277 (434)
161 3o4h_A Acylamino-acid-releasin 99.8 2.6E-19 8.8E-24 188.3 21.4 230 67-365 21-274 (582)
162 2oiz_A Aromatic amine dehydrog 99.8 9.2E-18 3.1E-22 164.9 29.6 285 3-349 33-360 (361)
163 3hfq_A Uncharacterized protein 99.8 9.5E-18 3.3E-22 164.2 28.8 234 37-366 4-270 (347)
164 3c5m_A Oligogalacturonate lyas 99.8 5.2E-19 1.8E-23 176.4 19.1 298 5-366 14-381 (396)
165 1q7f_A NHL, brain tumor CG1071 99.8 7.1E-17 2.4E-21 153.4 32.2 239 24-367 30-280 (286)
166 2oiz_A Aromatic amine dehydrog 99.8 3.6E-17 1.2E-21 160.7 30.1 276 34-368 14-335 (361)
167 1jmx_B Amine dehydrogenase; ox 99.8 1.8E-17 6E-22 162.1 27.6 287 2-335 22-335 (349)
168 1qks_A Cytochrome CD1 nitrite 99.8 1.4E-15 4.8E-20 157.0 38.4 313 3-370 179-541 (567)
169 3e5z_A Putative gluconolactona 99.8 2.1E-16 7E-21 151.0 29.8 257 1-366 1-285 (296)
170 3fvz_A Peptidyl-glycine alpha- 99.8 1E-16 3.6E-21 155.5 27.5 250 24-367 24-322 (329)
171 3pe7_A Oligogalacturonate lyas 99.8 4.5E-17 1.5E-21 161.9 25.5 259 49-369 14-331 (388)
172 2gop_A Trilobed protease; beta 99.8 1.4E-15 4.9E-20 148.6 32.2 256 22-366 13-330 (347)
173 2dg1_A DRP35, lactonase; beta 99.7 6.5E-16 2.2E-20 150.2 27.1 277 24-357 6-300 (333)
174 3azo_A Aminopeptidase; POP fam 99.7 4.9E-16 1.7E-20 166.0 27.2 289 22-369 22-371 (662)
175 4a5s_A Dipeptidyl peptidase 4 99.7 1.8E-16 6.2E-21 171.3 23.4 308 2-369 37-451 (740)
176 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.5E-15 8.6E-20 148.0 27.6 231 37-366 4-290 (365)
177 2z2n_A Virginiamycin B lyase; 99.7 1.4E-13 4.7E-18 131.2 38.2 278 23-367 14-295 (299)
178 3dsm_A Uncharacterized protein 99.7 6.2E-15 2.1E-19 142.8 28.8 273 3-344 19-319 (328)
179 3c5m_A Oligogalacturonate lyas 99.7 5.5E-16 1.9E-20 154.4 21.0 262 3-325 62-383 (396)
180 1qks_A Cytochrome CD1 nitrite 99.7 4.3E-14 1.5E-18 145.9 35.3 284 33-368 165-478 (567)
181 2xdw_A Prolyl endopeptidase; a 99.7 1.6E-14 5.6E-19 155.3 31.8 283 33-369 81-416 (710)
182 2gop_A Trilobed protease; beta 99.7 1.5E-14 5E-19 141.4 27.5 198 3-246 45-290 (347)
183 3azo_A Aminopeptidase; POP fam 99.7 9.2E-16 3.1E-20 163.9 20.2 192 28-244 81-320 (662)
184 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 3.9E-14 1.3E-18 136.2 29.3 265 1-367 1-299 (314)
185 1rwi_B Serine/threonine-protei 99.7 1.3E-14 4.6E-19 136.2 24.3 240 25-369 25-266 (270)
186 3no2_A Uncharacterized protein 99.7 4.7E-14 1.6E-18 132.6 27.9 215 34-355 4-231 (276)
187 2bkl_A Prolyl endopeptidase; m 99.7 3.2E-15 1.1E-19 160.3 21.1 245 23-369 120-399 (695)
188 2mad_H Methylamine dehydrogena 99.7 1.4E-12 4.9E-17 128.0 37.1 284 30-373 27-356 (373)
189 2dg1_A DRP35, lactonase; beta 99.6 5.1E-13 1.8E-17 129.6 32.4 197 22-244 43-260 (333)
190 3dsm_A Uncharacterized protein 99.6 2.7E-13 9.4E-18 131.2 30.1 263 43-369 15-303 (328)
191 2qc5_A Streptogramin B lactona 99.6 2.6E-12 8.7E-17 122.4 36.0 275 23-365 19-298 (300)
192 2xdw_A Prolyl endopeptidase; a 99.6 1.8E-13 6.1E-18 147.2 28.9 243 24-327 125-416 (710)
193 1q7f_A NHL, brain tumor CG1071 99.6 7.4E-13 2.5E-17 125.5 27.9 219 3-325 53-279 (286)
194 1yr2_A Prolyl oligopeptidase; 99.6 2E-13 6.8E-18 147.4 26.9 279 32-369 115-443 (741)
195 3fvz_A Peptidyl-glycine alpha- 99.6 1.8E-13 6.2E-18 132.6 24.1 231 2-325 70-321 (329)
196 3sjl_D Methylamine dehydrogena 99.6 1.3E-12 4.6E-17 126.5 29.4 286 29-372 38-368 (386)
197 3sjl_D Methylamine dehydrogena 99.6 9.3E-13 3.2E-17 127.6 28.2 282 3-347 61-384 (386)
198 2mad_H Methylamine dehydrogena 99.6 6.2E-12 2.1E-16 123.4 34.3 269 2-332 48-357 (373)
199 3c75_H MADH, methylamine dehyd 99.6 3.5E-12 1.2E-16 125.9 28.9 283 33-374 82-409 (426)
200 3c75_H MADH, methylamine dehyd 99.5 1.9E-12 6.5E-17 127.8 25.8 270 2-332 100-409 (426)
201 3hrp_A Uncharacterized protein 99.5 5.5E-12 1.9E-16 125.6 28.8 253 24-365 131-408 (409)
202 3no2_A Uncharacterized protein 99.5 4.7E-12 1.6E-16 119.0 24.3 188 78-370 4-198 (276)
203 3g4e_A Regucalcin; six bladed 99.5 3.1E-11 1.1E-15 114.9 30.1 232 26-356 15-261 (297)
204 3e5z_A Putative gluconolactona 99.5 4E-12 1.4E-16 121.1 23.6 210 3-325 52-285 (296)
205 3dr2_A Exported gluconolactona 99.5 1.7E-11 5.8E-16 117.2 27.8 233 23-361 44-301 (305)
206 2z2n_A Virginiamycin B lyase; 99.5 1.4E-10 4.8E-15 110.1 33.3 236 67-366 14-254 (299)
207 1yr2_A Prolyl oligopeptidase; 99.5 1.2E-11 4.1E-16 133.5 27.4 246 24-333 163-448 (741)
208 2bkl_A Prolyl endopeptidase; m 99.5 3.5E-12 1.2E-16 136.7 22.5 234 32-366 76-348 (695)
209 1rwi_B Serine/threonine-protei 99.4 8E-12 2.7E-16 117.1 21.3 197 24-325 67-263 (270)
210 2ghs_A AGR_C_1268P; regucalcin 99.4 1.2E-10 4E-15 112.5 29.9 232 26-356 51-291 (326)
211 2qe8_A Uncharacterized protein 99.4 2.2E-11 7.6E-16 118.5 23.8 271 24-360 17-314 (343)
212 3iuj_A Prolyl endopeptidase; h 99.4 1.9E-11 6.3E-16 130.8 23.4 260 23-369 128-407 (693)
213 2qc5_A Streptogramin B lactona 99.4 1.3E-09 4.6E-14 103.3 32.9 236 67-366 19-259 (300)
214 1mda_H Methylamine dehydrogena 99.4 2.5E-11 8.5E-16 117.9 19.2 259 46-371 47-350 (368)
215 1mda_H Methylamine dehydrogena 99.4 3.7E-11 1.3E-15 116.7 19.9 274 3-346 48-366 (368)
216 2ece_A 462AA long hypothetical 99.4 1.4E-09 4.6E-14 106.1 30.7 241 74-355 88-399 (462)
217 1xip_A Nucleoporin NUP159; bet 99.4 2.4E-11 8.2E-16 118.2 18.3 141 24-244 38-188 (388)
218 1kb0_A Quinohemoprotein alcoho 99.3 6.5E-10 2.2E-14 117.9 28.8 322 35-371 77-511 (677)
219 1xip_A Nucleoporin NUP159; bet 99.3 9.6E-11 3.3E-15 114.0 17.1 132 175-355 89-232 (388)
220 1yiq_A Quinohemoprotein alcoho 99.3 3.3E-09 1.1E-13 112.6 29.9 327 35-372 70-511 (689)
221 3g4e_A Regucalcin; six bladed 99.3 3.3E-09 1.1E-13 100.8 26.3 208 3-236 37-261 (297)
222 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.2E-09 4E-14 104.7 23.2 221 3-244 48-296 (314)
223 3hrp_A Uncharacterized protein 99.2 3.4E-09 1.2E-13 105.4 25.8 157 179-368 176-355 (409)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.4E-08 8.2E-13 98.3 30.7 265 34-364 102-375 (376)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.3E-08 7.8E-13 98.5 28.0 270 35-370 53-340 (376)
226 1kb0_A Quinohemoprotein alcoho 99.1 4.9E-08 1.7E-12 103.5 31.0 295 34-353 127-536 (677)
227 1yiq_A Quinohemoprotein alcoho 99.1 4.3E-08 1.5E-12 104.1 30.5 296 35-354 121-536 (689)
228 2ghs_A AGR_C_1268P; regucalcin 99.1 3.6E-08 1.2E-12 94.9 26.9 207 3-236 73-291 (326)
229 2ece_A 462AA long hypothetical 99.1 2.2E-08 7.4E-13 97.7 24.9 195 30-246 88-351 (462)
230 2hz6_A Endoplasmic reticulum t 99.1 5.1E-11 1.7E-15 117.0 6.2 204 34-349 8-216 (369)
231 3hxj_A Pyrrolo-quinoline quino 99.1 7.3E-09 2.5E-13 99.8 21.2 282 3-367 42-324 (330)
232 1fwx_A Nitrous oxide reductase 99.1 1.9E-08 6.5E-13 101.6 24.4 203 33-244 99-358 (595)
233 1npe_A Nidogen, entactin; glyc 99.1 5.9E-07 2E-11 83.6 31.9 250 35-349 1-263 (267)
234 1fwx_A Nitrous oxide reductase 99.1 3.9E-08 1.3E-12 99.3 24.6 157 194-367 174-361 (595)
235 3dr2_A Exported gluconolactona 99.1 1.7E-08 5.9E-13 96.2 21.3 194 22-242 84-302 (305)
236 2iwa_A Glutamine cyclotransfer 99.1 1.3E-07 4.4E-12 86.7 25.8 209 56-368 10-238 (266)
237 2iwa_A Glutamine cyclotransfer 99.1 6.9E-08 2.4E-12 88.5 24.0 206 15-244 10-234 (266)
238 1kv9_A Type II quinohemoprotei 99.0 8.7E-08 3E-12 101.5 27.0 327 35-372 66-493 (668)
239 2p4o_A Hypothetical protein; p 99.0 1.2E-06 4.3E-11 83.2 32.5 239 15-357 23-278 (306)
240 3iuj_A Prolyl endopeptidase; h 99.0 3.8E-08 1.3E-12 105.2 23.9 218 2-327 156-407 (693)
241 2qe8_A Uncharacterized protein 99.0 5E-09 1.7E-13 101.8 15.3 183 23-244 66-275 (343)
242 2fp8_A Strictosidine synthase; 99.0 2.4E-07 8.2E-12 89.0 26.1 245 25-367 20-313 (322)
243 2ad6_A Methanol dehydrogenase 98.9 6.4E-07 2.2E-11 92.8 29.3 324 35-370 62-497 (571)
244 3nol_A Glutamine cyclotransfer 98.9 4.6E-07 1.6E-11 81.9 24.4 194 57-356 33-244 (262)
245 3nol_A Glutamine cyclotransfer 98.9 2.6E-07 9E-12 83.5 22.3 196 15-236 32-244 (262)
246 2hz6_A Endoplasmic reticulum t 98.9 3.3E-10 1.1E-14 111.2 3.1 185 78-372 8-198 (369)
247 3nok_A Glutaminyl cyclase; bet 98.9 3.1E-07 1.1E-11 83.0 21.4 193 15-235 44-253 (268)
248 1w6s_A Methanol dehydrogenase 98.9 2.1E-06 7.3E-11 88.9 30.6 324 35-372 62-509 (599)
249 3hxj_A Pyrrolo-quinoline quino 98.9 2.9E-08 9.8E-13 95.6 15.7 260 27-366 23-283 (330)
250 3mbr_X Glutamine cyclotransfer 98.8 1.5E-06 5.1E-11 77.9 24.1 194 15-236 10-223 (243)
251 4a2l_A BT_4663, two-component 98.8 6.4E-06 2.2E-10 89.4 34.0 285 26-368 175-481 (795)
252 3mbr_X Glutamine cyclotransfer 98.8 3.8E-06 1.3E-10 75.3 26.1 194 57-356 11-223 (243)
253 4a2l_A BT_4663, two-component 98.8 3.7E-05 1.3E-09 83.4 37.1 288 23-369 214-528 (795)
254 3nok_A Glutaminyl cyclase; bet 98.8 1.7E-06 5.7E-11 78.3 21.8 193 56-355 44-253 (268)
255 1flg_A Protein (quinoprotein e 98.7 2.4E-05 8.3E-10 81.1 33.0 327 36-372 69-522 (582)
256 1npe_A Nidogen, entactin; glyc 98.7 2.1E-05 7.3E-10 72.9 29.6 194 24-244 36-235 (267)
257 3tc9_A Hypothetical hydrolase; 98.7 1.7E-05 5.7E-10 79.1 29.4 152 25-244 138-298 (430)
258 2ad6_A Methanol dehydrogenase 98.7 1.5E-05 5E-10 82.6 29.3 293 35-352 115-522 (571)
259 3v9f_A Two-component system se 98.7 5.7E-05 2E-09 81.8 33.9 286 23-369 257-570 (781)
260 1k3i_A Galactose oxidase precu 98.6 2.1E-06 7.1E-11 91.0 21.6 277 28-356 190-530 (656)
261 1kv9_A Type II quinohemoprotei 98.6 2.3E-05 7.9E-10 82.9 29.0 162 35-211 117-340 (668)
262 4hw6_A Hypothetical protein, I 98.6 5.3E-05 1.8E-09 75.5 28.3 255 25-366 140-432 (433)
263 3qqz_A Putative uncharacterize 98.6 6.8E-05 2.3E-09 68.2 26.1 205 67-365 26-251 (255)
264 3v64_C Agrin; beta propeller, 98.6 0.00021 7.3E-09 69.0 31.4 238 24-369 34-277 (349)
265 2xe4_A Oligopeptidase B; hydro 98.5 9.3E-06 3.2E-10 87.3 23.5 59 25-88 175-241 (751)
266 1w6s_A Methanol dehydrogenase 98.5 7.9E-05 2.7E-09 77.2 28.6 159 38-212 124-350 (599)
267 3v65_B Low-density lipoprotein 98.5 0.00021 7E-09 70.1 30.0 236 27-369 80-320 (386)
268 3v9f_A Two-component system se 98.5 0.00051 1.7E-08 74.3 35.2 293 24-369 163-480 (781)
269 1flg_A Protein (quinoprotein e 98.5 0.00021 7.2E-09 74.0 30.5 73 35-107 117-202 (582)
270 1ijq_A LDL receptor, low-densi 98.4 0.001 3.5E-08 63.2 32.0 228 81-370 3-241 (316)
271 3kya_A Putative phosphatase; s 98.4 0.00047 1.6E-08 68.9 28.8 160 25-244 140-338 (496)
272 1k3i_A Galactose oxidase precu 98.4 9.1E-06 3.1E-10 86.1 17.4 227 3-244 221-494 (656)
273 2xbg_A YCF48-like protein; pho 98.3 0.0025 8.5E-08 60.8 33.8 274 23-364 35-319 (327)
274 2p4o_A Hypothetical protein; p 98.3 0.00033 1.1E-08 66.3 25.5 204 68-366 32-241 (306)
275 1ijq_A LDL receptor, low-densi 98.3 0.0026 8.9E-08 60.3 32.2 181 37-244 3-192 (316)
276 3p5b_L Low density lipoprotein 98.3 0.003 1E-07 62.1 33.0 230 37-371 85-324 (400)
277 3v65_B Low-density lipoprotein 98.3 0.00042 1.5E-08 67.9 26.0 216 24-344 116-337 (386)
278 3v64_C Agrin; beta propeller, 98.3 0.00078 2.7E-08 65.0 27.5 154 24-244 73-231 (349)
279 3p5b_L Low density lipoprotein 98.2 0.0022 7.4E-08 63.1 30.4 154 24-244 112-274 (400)
280 2fp8_A Strictosidine synthase; 98.2 0.0003 1E-08 67.1 22.9 192 25-244 81-310 (322)
281 3qqz_A Putative uncharacterize 98.2 0.0028 9.5E-08 57.5 27.2 200 24-244 27-250 (255)
282 2xe4_A Oligopeptidase B; hydro 98.2 0.00012 4.1E-09 78.6 21.4 67 178-244 225-301 (751)
283 3sov_A LRP-6, low-density lipo 98.1 0.0038 1.3E-07 59.2 28.9 181 37-244 6-194 (318)
284 3amr_A 3-phytase; beta-propell 98.1 0.0012 3.9E-08 62.4 24.1 206 79-333 40-272 (355)
285 3sov_A LRP-6, low-density lipo 98.1 0.004 1.4E-07 59.0 28.5 230 81-370 6-241 (318)
286 3m0c_C LDL receptor, low-densi 98.1 0.0038 1.3E-07 66.7 30.6 181 37-244 397-586 (791)
287 2p9w_A MAL S 1 allergenic prot 98.1 0.0011 3.7E-08 62.1 22.7 201 26-244 15-262 (334)
288 3m0c_C LDL receptor, low-densi 98.0 0.015 5.1E-07 62.1 31.8 230 81-371 397-636 (791)
289 2p9w_A MAL S 1 allergenic prot 97.9 0.0027 9.3E-08 59.4 22.5 158 175-366 64-264 (334)
290 3ei3_A DNA damage-binding prot 97.9 0.038 1.3E-06 61.7 35.7 79 23-102 553-642 (1158)
291 3tc9_A Hypothetical hydrolase; 97.9 0.00076 2.6E-08 67.1 20.0 154 175-367 138-301 (430)
292 4a0p_A LRP6, LRP-6, low-densit 97.9 0.031 1.1E-06 58.2 32.3 230 37-371 8-241 (628)
293 2xbg_A YCF48-like protein; pho 97.9 0.02 6.7E-07 54.5 28.8 158 175-375 123-286 (327)
294 3s94_A LRP-6, low-density lipo 97.9 0.038 1.3E-06 57.5 35.2 159 175-370 350-513 (619)
295 2xzh_A Clathrin heavy chain 1; 97.9 0.017 6E-07 53.4 34.0 270 45-368 49-333 (365)
296 3sre_A PON1, serum paraoxonase 97.8 0.0065 2.2E-07 58.1 24.2 156 70-244 52-249 (355)
297 4hw6_A Hypothetical protein, I 97.8 0.0025 8.5E-08 63.4 21.0 228 3-244 164-430 (433)
298 3amr_A 3-phytase; beta-propell 97.8 0.0097 3.3E-07 56.2 23.3 186 35-244 40-260 (355)
299 1n7d_A LDL receptor, low-densi 97.7 0.00012 4E-09 77.7 11.2 154 24-244 406-568 (699)
300 1n7d_A LDL receptor, low-densi 97.7 0.00024 8.1E-09 75.4 12.8 221 88-369 385-616 (699)
301 1bpo_A Protein (clathrin); cla 97.7 0.045 1.5E-06 52.9 36.4 272 44-369 47-333 (494)
302 3a9g_A Putative uncharacterize 97.7 0.025 8.5E-07 54.4 25.7 247 68-355 29-330 (354)
303 2ism_A Putative oxidoreductase 97.7 0.043 1.5E-06 52.7 27.5 73 24-99 31-115 (352)
304 2ism_A Putative oxidoreductase 97.7 0.037 1.3E-06 53.2 26.7 149 68-234 31-220 (352)
305 3kya_A Putative phosphatase; s 97.5 0.027 9.1E-07 56.3 23.6 231 3-244 164-472 (496)
306 2vpj_A Kelch-like protein 12; 97.4 0.016 5.6E-07 54.2 20.4 70 303-373 206-283 (301)
307 4a0p_A LRP6, LRP-6, low-densit 97.4 0.19 6.4E-06 52.4 37.9 193 24-244 37-234 (628)
308 3das_A Putative oxidoreductase 97.4 0.11 3.6E-06 49.5 25.7 55 24-78 32-90 (347)
309 2be1_A Serine/threonine-protei 97.3 0.022 7.5E-07 53.9 18.8 115 80-213 11-139 (339)
310 3ei3_A DNA damage-binding prot 97.3 0.39 1.3E-05 53.7 33.5 141 185-367 844-999 (1158)
311 3sre_A PON1, serum paraoxonase 97.2 0.11 3.8E-06 49.5 23.5 59 296-357 224-287 (355)
312 3s94_A LRP-6, low-density lipo 97.2 0.28 9.7E-06 50.9 37.0 302 24-368 127-468 (619)
313 2xn4_A Kelch-like protein 2; s 97.2 0.059 2E-06 50.3 21.3 71 303-374 204-282 (302)
314 3pbp_A Nucleoporin NUP82; beta 97.2 0.046 1.6E-06 52.8 19.8 159 31-201 28-209 (452)
315 3ii7_A Kelch-like protein 7; p 97.2 0.11 3.8E-06 48.5 22.9 183 35-244 12-222 (306)
316 3s25_A Hypothetical 7-bladed b 97.1 0.17 5.8E-06 47.2 25.9 247 33-364 23-290 (302)
317 3ii7_A Kelch-like protein 7; p 97.0 0.036 1.2E-06 52.0 18.2 183 34-244 55-269 (306)
318 2vpj_A Kelch-like protein 12; 96.9 0.082 2.8E-06 49.3 19.7 60 184-244 159-228 (301)
319 1zgk_A Kelch-like ECH-associat 96.8 0.1 3.5E-06 48.9 19.1 60 184-244 121-190 (308)
320 4asc_A Kelch repeat and BTB do 96.8 0.34 1.2E-05 45.3 23.3 48 37-87 7-54 (315)
321 2g8s_A Glucose/sorbosone dehyd 96.8 0.4 1.4E-05 45.9 25.2 73 24-98 18-107 (353)
322 2xn4_A Kelch-like protein 2; s 96.7 0.082 2.8E-06 49.3 17.7 184 34-244 61-273 (302)
323 1xi4_A Clathrin heavy chain; a 96.7 0.17 5.7E-06 56.5 21.7 270 45-367 48-331 (1630)
324 4asc_A Kelch repeat and BTB do 96.6 0.077 2.6E-06 49.9 16.9 207 3-237 15-253 (315)
325 1cru_A Protein (soluble quinop 96.6 0.7 2.4E-05 45.8 31.6 63 24-86 27-98 (454)
326 2woz_A Kelch repeat and BTB do 96.6 0.52 1.8E-05 44.2 22.8 60 184-244 109-181 (318)
327 2woz_A Kelch repeat and BTB do 96.5 0.26 9E-06 46.2 19.7 207 3-237 26-263 (318)
328 1cru_A Protein (soluble quinop 96.5 0.32 1.1E-05 48.3 20.8 60 175-234 28-97 (454)
329 3pbp_A Nucleoporin NUP82; beta 96.5 0.55 1.9E-05 45.4 21.1 170 180-372 27-217 (452)
330 2uvk_A YJHT; unknown function, 96.3 0.43 1.5E-05 45.6 20.3 21 34-54 19-40 (357)
331 1zgk_A Kelch-like ECH-associat 96.3 0.21 7.2E-06 46.7 17.7 184 34-244 70-284 (308)
332 2xzh_A Clathrin heavy chain 1; 96.2 0.77 2.6E-05 42.6 29.5 183 28-244 71-287 (365)
333 3sbq_A Nitrous-oxide reductase 96.1 1.3 4.5E-05 44.3 23.9 68 175-244 324-405 (638)
334 3das_A Putative oxidoreductase 96.0 0.35 1.2E-05 45.8 17.5 53 175-227 33-90 (347)
335 1tl2_A L10, protein (tachylect 95.9 0.097 3.3E-06 45.6 11.8 152 175-366 42-207 (236)
336 3a9g_A Putative uncharacterize 95.8 1.4 4.7E-05 42.1 24.5 106 109-235 29-153 (354)
337 3s25_A Hypothetical 7-bladed b 95.6 1.4 4.8E-05 40.9 25.2 143 178-369 108-257 (302)
338 1bpo_A Protein (clathrin); cla 95.5 2 6.7E-05 41.7 28.9 183 28-244 70-286 (494)
339 1tl2_A L10, protein (tachylect 95.5 0.4 1.4E-05 41.8 13.7 67 24-95 41-113 (236)
340 3sbq_A Nitrous-oxide reductase 95.4 2.6 8.7E-05 42.3 25.0 268 37-367 72-408 (638)
341 3ott_A Two-component system se 95.2 4 0.00014 43.4 33.6 190 23-244 62-257 (758)
342 2g8s_A Glucose/sorbosone dehyd 95.2 2.3 7.7E-05 40.5 20.7 65 175-239 272-346 (353)
343 2uvk_A YJHT; unknown function, 94.2 2.3 8E-05 40.3 17.6 53 34-88 65-128 (357)
344 2be1_A Serine/threonine-protei 94.1 0.16 5.5E-06 47.9 8.7 113 36-149 11-137 (339)
345 1xi4_A Clathrin heavy chain; a 93.7 1.3 4.4E-05 49.7 15.6 178 24-212 106-297 (1630)
346 2zwa_A Leucine carboxyl methyl 93.4 5.1 0.00017 42.1 19.6 193 33-244 396-632 (695)
347 2zwa_A Leucine carboxyl methyl 92.8 9.6 0.00033 40.0 20.7 107 125-244 400-519 (695)
348 4hvt_A Ritya.17583.B, post-pro 92.2 13 0.00044 39.1 24.0 195 27-243 132-375 (711)
349 3ott_A Two-component system se 90.9 18 0.00062 38.3 34.3 198 24-244 324-542 (758)
350 3qhy_B Beta-lactamase inhibito 88.8 7.5 0.00026 35.5 13.5 48 316-367 197-246 (282)
351 3zwu_A Alkaline phosphatase PH 78.2 6 0.0002 40.3 8.3 60 175-234 477-548 (592)
352 2wg3_C Hedgehog-interacting pr 77.1 32 0.0011 33.9 13.2 28 217-244 14-42 (463)
353 3b7f_A Glycosyl hydrolase, BNR 76.4 54 0.0018 31.2 28.3 63 175-238 178-254 (394)
354 4gq2_M Nucleoporin NUP120; bet 75.7 42 0.0014 36.6 14.8 40 173-212 235-274 (950)
355 4a9v_A PHOX; hydrolase, beta-p 73.0 13 0.00043 37.6 8.9 61 175-235 477-549 (592)
356 3zwu_A Alkaline phosphatase PH 72.3 13 0.00045 37.8 9.1 60 26-86 478-549 (592)
357 3q6k_A 43.2 kDa salivary prote 71.9 70 0.0024 30.4 21.9 201 24-234 87-341 (381)
358 4hvt_A Ritya.17583.B, post-pro 70.2 1.1E+02 0.0038 32.0 17.3 30 180-209 136-170 (711)
359 3qhy_B Beta-lactamase inhibito 67.3 72 0.0025 28.8 12.9 63 175-244 181-243 (282)
360 4a9v_A PHOX; hydrolase, beta-p 62.5 37 0.0013 34.2 9.8 63 24-87 476-550 (592)
361 2wg3_C Hedgehog-interacting pr 61.5 1.3E+02 0.0043 29.6 27.7 55 24-78 14-79 (463)
362 4fhn_B Nucleoporin NUP120; pro 60.6 27 0.00093 39.0 9.5 39 174-212 238-276 (1139)
363 3mez_B Mannose-specific lectin 59.8 54 0.0018 24.8 8.6 58 185-244 24-81 (113)
364 3uc1_A DNA gyrase subunit A; D 59.4 1.1E+02 0.0038 28.3 23.2 208 24-244 42-276 (327)
365 1suu_A DNA gyrase subunit A; t 58.8 1.1E+02 0.0038 28.0 18.2 70 175-244 152-228 (312)
366 3f7f_A Nucleoporin NUP120; nuc 58.7 52 0.0018 34.2 10.3 38 69-108 223-260 (729)
367 4fhn_B Nucleoporin NUP120; pro 58.4 33 0.0011 38.3 9.7 40 69-108 239-278 (1139)
368 3b7f_A Glycosyl hydrolase, BNR 54.7 1.4E+02 0.0049 28.1 28.6 46 297-345 345-391 (394)
369 3q6k_A 43.2 kDa salivary prote 54.3 1.5E+02 0.0051 28.1 18.6 154 196-367 124-306 (381)
370 3ukw_C Bimax1 peptide; arm rep 53.4 4.2 0.00014 20.7 0.7 12 498-509 3-14 (28)
371 3f7f_A Nucleoporin NUP120; nuc 53.0 20 0.0007 37.2 6.2 38 24-63 222-259 (729)
372 3kci_A Probable E3 ubiquitin-p 51.3 1.6E+02 0.0056 27.8 19.4 61 184-244 61-132 (389)
373 4gq2_M Nucleoporin NUP120; bet 49.5 2.9E+02 0.0098 30.0 23.6 29 217-245 236-264 (950)
374 3no0_A DNA gyrase subunit A; D 48.8 1.5E+02 0.0051 26.6 20.0 69 176-244 118-193 (276)
375 3no0_A DNA gyrase subunit A; D 43.2 1.8E+02 0.0062 26.0 21.8 153 184-366 79-245 (276)
376 2zux_A YESW protein; beta-prop 40.6 3E+02 0.01 27.7 20.5 177 46-237 152-386 (591)
377 1zi0_A DNA gyrase subunit A; b 39.2 2.2E+02 0.0076 25.9 26.9 70 175-244 96-173 (307)
378 1q47_A Semaphorin 3A; beta pro 38.6 95 0.0032 30.8 8.4 68 175-242 405-487 (495)
379 1suu_A DNA gyrase subunit A; t 38.3 2.3E+02 0.008 25.8 24.7 61 184-244 113-178 (312)
380 3al9_A Plexin-A2; beta-propell 35.4 60 0.0021 32.6 6.4 69 175-243 401-477 (539)
381 3uc1_A DNA gyrase subunit A; D 32.8 3E+02 0.01 25.4 22.2 70 175-244 96-173 (327)
382 3l6v_A GYRA, DNA gyrase subuni 31.6 3.3E+02 0.011 25.6 26.2 61 184-244 112-177 (370)
383 3a0c_A Mannose/sialic acid-bin 28.1 1.8E+02 0.0063 21.5 9.1 12 222-233 55-66 (110)
384 3kci_A Probable E3 ubiquitin-p 27.9 3.8E+02 0.013 25.1 25.8 59 186-244 169-238 (389)
385 3bbn_U Ribosomal protein S21; 27.0 17 0.00057 30.0 0.6 12 498-509 128-139 (190)
386 3ol2_B Plexin-B1; beta-propell 25.9 1.4E+02 0.0049 29.7 7.2 69 175-243 388-462 (528)
387 1q47_A Semaphorin 3A; beta pro 24.3 1.4E+02 0.0049 29.4 6.9 69 25-93 405-487 (495)
388 3dzw_A Agglutinin; lectin, man 23.9 2.2E+02 0.0075 21.0 9.1 12 222-233 54-65 (109)
389 3l6v_A GYRA, DNA gyrase subuni 23.5 4.6E+02 0.016 24.6 27.0 157 32-203 4-179 (370)
390 3al9_A Plexin-A2; beta-propell 23.2 1.3E+02 0.0046 30.0 6.5 69 25-93 401-476 (539)
391 4gz8_A Semaphorin-3A; multi-do 23.0 2.3E+02 0.0078 29.2 8.2 56 187-242 431-495 (667)
392 1b2p_A Protein (lectin); manno 22.5 2.5E+02 0.0086 21.1 8.6 9 223-231 66-74 (119)
393 3r0e_B Lectin; carbohydrate bi 20.7 2.6E+02 0.0089 20.7 6.7 12 222-233 58-69 (110)
394 3nvq_A Semaphorin-7A; beta-pro 20.5 2.4E+02 0.0083 28.5 7.7 58 186-243 381-445 (590)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-43 Score=354.77 Aligned_cols=283 Identities=17% Similarity=0.308 Sum_probs=255.3
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
..|.++|+|++|+|++.+||+|+.||+|+|||+.+++....+.+| ...|++++|+|++++|++|+.|++|++||+.++
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h--~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH--TDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC--SSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc--CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 348899999999999999999999999999999999999999766 899999999999999999999999999999999
Q ss_pred eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 100 EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 100 ~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
+++..+..|. .+.++.|+|++. ++++++.|+.+++||+.++....... .|...+.+
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~---~l~s~s~D~~i~~wd~~~~~~~~~~~--------------------~h~~~v~~ 239 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQTGYCVKTFT--------------------GHREWVRM 239 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCCcEEEEEe--------------------CCCccEEE
Confidence 9988887765 588999999754 79999999999999999987654321 12337899
Q ss_pred EEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeC--------------------CCEEEEeeCCC
Q 008844 179 ACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN--------------------GQYLLTNSNDR 238 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~--------------------g~~l~t~s~Dg 238 (551)
++|++++.+|++|+.||.|++||+.+++....+. .|...|.+++|+|+ |.+|++|+.|+
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 9999999999999999999999999999888776 88999999999996 67899999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
+|++||+ ..+.++..+.+|...|. +++|+|+|++|++|+. |+.
T Consensus 319 ~i~iwd~-----------------------------~~~~~~~~~~~h~~~v~-----~v~~~~~g~~l~s~s~---D~~ 361 (410)
T 1vyh_C 319 TIKMWDV-----------------------------STGMCLMTLVGHDNWVR-----GVLFHSGGKFILSCAD---DKT 361 (410)
T ss_dssp EEEEEET-----------------------------TTTEEEEEEECCSSCEE-----EEEECSSSSCEEEEET---TTE
T ss_pred eEEEEEC-----------------------------CCCceEEEEECCCCcEE-----EEEEcCCCCEEEEEeC---CCe
Confidence 9999992 22566778888888887 8899999999999999 999
Q ss_pred EEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 319 IYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 319 I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
|+|||+. ++++..+.+|...|++++|+|++++|++++.||+|+||++
T Consensus 362 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999 9999999999999999999999999999999999999986
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7e-43 Score=339.46 Aligned_cols=285 Identities=17% Similarity=0.227 Sum_probs=249.0
Q ss_pred cccceEEEEEEcCC----CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEc
Q 008844 21 LEHGVMKCIAFNRR----GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 21 ~h~~~V~~l~fs~d----g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~ 96 (551)
.|.+.|++++|+|+ +.+||+|+.|++|+||++.++.........+|...|.+++|++++.+|++++.|++|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 48899999999985 67999999999999999987765443333455999999999999999999999999999999
Q ss_pred CCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.+++.+..+..+. .+..+.|+|++. ++++++.++.+.+|++.++........ +...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~---~l~~g~~dg~v~i~~~~~~~~~~~~~~--------------------~~~~ 166 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQ---YLATGTHVGKVNIFGVESGKKEYSLDT--------------------RGKF 166 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSS---EEEEECTTSEEEEEETTTCSEEEEEEC--------------------SSSC
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCC---EEEEEcCCCcEEEEEcCCCceeEEecC--------------------CCce
Confidence 9999998887664 577899999865 799999999999999998876543211 1227
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
+.+++|+|+|++|++|+.||.|++||+.+++.+..+. .|...|++++|+|++++|++++.|++|+|||+.
T Consensus 167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~--------- 236 (321)
T 3ow8_A 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ--------- 236 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETT---------
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC---------
Confidence 8999999999999999999999999999999988886 788999999999999999999999999999932
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG 334 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~ 334 (551)
.......+.+|...|. +++|+|++++|++++. |+.|+|||+. ++++..+.+
T Consensus 237 --------------------~~~~~~~~~~h~~~v~-----~~~~sp~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~ 288 (321)
T 3ow8_A 237 --------------------HANLAGTLSGHASWVL-----NVAFCPDDTHFVSSSS---DKSVKVWDVGTRTCVHTFFD 288 (321)
T ss_dssp --------------------TCCEEEEECCCSSCEE-----EEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECC
T ss_pred --------------------CcceeEEEcCCCCceE-----EEEECCCCCEEEEEeC---CCcEEEEeCCCCEEEEEEcC
Confidence 2445667778888887 8999999999999999 9999999999 999999999
Q ss_pred CCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 335 PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 335 h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
|...|.+++|+|++.+|++++.||.|+|||+.
T Consensus 289 h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999963
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.9e-42 Score=335.19 Aligned_cols=280 Identities=16% Similarity=0.224 Sum_probs=242.4
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC-
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG- 99 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~- 99 (551)
.|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..| ...|.+++|+|++++|++++.|+.|++|++.++
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR--SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS--SSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC--CccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 38899999999999999999999999999999999998888766 889999999999999999999999999999775
Q ss_pred ---eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 100 ---EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 100 ---~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.....+..|. .+..+.|++++ .+++++.++.+++||+.++....... .|...
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~s~d~~i~~wd~~~~~~~~~~~--------------------~h~~~ 186 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFT--------------------GHTGD 186 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETT----EEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSC
T ss_pred CcceeEEEecCCCccEEEEEECCCC----cEEEEECCCcEEEEECCCCcEEEEEc--------------------CCCCc
Confidence 3455666665 46778888865 58999999999999999887653321 23348
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
|.+++|+|++.+|++|+.||.|++||++++..+..+. .|...|++++|+|++++|++++.|++|++||+..
T Consensus 187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-------- 257 (340)
T 1got_B 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRA-------- 257 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC--------
Confidence 9999999999999999999999999999999888876 7899999999999999999999999999999321
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeec--ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFR--EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
...+..+. .+...+. +++|+|+|++|++|+. |+.|+|||+. +..+..+
T Consensus 258 ---------------------~~~~~~~~~~~~~~~v~-----~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~~~~~ 308 (340)
T 1got_B 258 ---------------------DQELMTYSHDNIICGIT-----SVSFSKSGRLLLAGYD---DFNCNVWDALKADRAGVL 308 (340)
T ss_dssp ---------------------TEEEEEECCTTCCSCEE-----EEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEE
T ss_pred ---------------------CcEEEEEccCCcccceE-----EEEECCCCCEEEEECC---CCeEEEEEcccCcEeeEe
Confidence 22222222 1222344 8999999999999999 9999999999 9999999
Q ss_pred ecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.+|...|.+++|+|++.+|++++.||.|+||+
T Consensus 309 ~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999996
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.8e-41 Score=323.61 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=247.4
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
|.+.|++++|+|+|++||+|+.||+|+|||+.++..+..+..| ..+|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT--ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc--CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence 8899999999999999999999999999999999999998766 89999999999999999999999999999999999
Q ss_pred EEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 102 ITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 102 ~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
+..+..|. .+..+.|+|++. ++++++.|+.+++||+.++....... ..|...|.+++
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~---~l~sgs~D~~v~lWd~~~~~~~~~~~-------------------~~h~~~v~~v~ 147 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQTF-------------------EGHEHFVMCVA 147 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSS---EEEEEETTSCEEEEEGGGTTEEEEEE-------------------CCCCSCEEEEE
T ss_pred EEEEeCCCCcEEEEEEcCCCC---EEEEECCCCeEEEEECCCCcchhhhh-------------------cccCCcEEEEE
Confidence 99998876 478999999854 89999999999999998774432211 12344899999
Q ss_pred Eee-CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee--CCCEEEEeeCCCeEEEEeCcCCccccchhhh
Q 008844 181 FNK-YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR--NGQYLLTNSNDRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 181 ~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~--~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
|+| ++.+|++|+.||.|++||+.+......+...+...+..+.|+| ++.+|++++.|++|++||+
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~------------ 215 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY------------ 215 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEET------------
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC------------
Confidence 999 5789999999999999999988776666546778899999987 6789999999999999992
Q ss_pred hhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC
Q 008844 258 DIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK 336 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~ 336 (551)
....++..+.+|...|. .++|+|++.+|++|+. ||.|+|||+. ++++..+..|.
T Consensus 216 -----------------~~~~~~~~~~~h~~~v~-----~~~~~p~~~~l~s~s~---Dg~i~iWd~~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 216 -----------------QTKSCVATLEGHMSNVS-----FAVFHPTLPIIISGSE---DGTLKIWNSSTYKVEKTLNVGL 270 (304)
T ss_dssp -----------------TTTEEEEEEECCSSCEE-----EEEECSSSSEEEEEET---TSCEEEEETTTCCEEEEECCSS
T ss_pred -----------------CCCccceeeCCCCCCEE-----EEEECCCCCEEEEEcC---CCeEEEEECCCCceeeeccCCC
Confidence 23567788888988887 8899999999999999 9999999999 99999999999
Q ss_pred CceEEEEEecCCC--eEEEEcCCCcEEEEecCC
Q 008844 337 EALIDLAWHPVHP--IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 337 ~~v~~l~~sp~~~--~l~s~s~dg~i~iW~~~~ 367 (551)
..+.+++|+|++. +|++++ +..+.+|++..
T Consensus 271 ~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 271 ERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp SSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred ccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 9999999999886 577776 45577888764
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.3e-42 Score=341.24 Aligned_cols=311 Identities=14% Similarity=0.188 Sum_probs=247.1
Q ss_pred ccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEE
Q 008844 5 IIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILV 84 (551)
Q Consensus 5 lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s 84 (551)
.|++........+.. |.+.|++++|+|+|++||+|+.||+|+|||+.+++....+..| ...|.+++|+|++++|++
T Consensus 50 ~~~~~~~~~~~~l~g--H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h--~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 50 SFNPTDLVCCRTLQG--HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH--CPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp CCCCCCCEEEEEECC--CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC--CTTCCCCEECTTSSEEEE
T ss_pred ccccceeEEeecccc--cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC--CCCEEEEEECCCCCEEEE
Confidence 455555544455544 8899999999999999999999999999999999999998876 889999999999999999
Q ss_pred EeCCCCEEEEEcCCCe-------EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCC
Q 008844 85 SAADKSLTLWDVLKGE-------KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVA 156 (551)
Q Consensus 85 ~s~dg~i~vwd~~~~~-------~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 156 (551)
|+.|+.|++|++.+.. ....+..|. .+..+.|.|.. ...+++++.|+.+++||+.++.........
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~---- 199 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ--ETRLITGSGDQTCVLWDVTTGQRISIFGSE---- 199 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS--SSCEEEECTTSCEEEECTTTCCEEEEECCC----
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC--CCEEEEECCCCcEEEEEcCCCcEEEEeecc----
Confidence 9999999999986532 122333443 35667777754 346899999999999999998765432110
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEee-CCCEEEEEecCceEEEEECCC-CcEEEeeeccCccceEEEEEeeCCCEEEEe
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAACFNK-YGDLVYVGNSKGEILVIDHKS-NQIRALVPVSGAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~ 234 (551)
....|...+.+++|++ ++++|++|+.||.|++||++. ...+..+. .|...|++++|+|++++|+++
T Consensus 200 -----------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 200 -----------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp -----------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEE
T ss_pred -----------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEE
Confidence 1123445899999987 789999999999999999984 45555554 799999999999999999999
Q ss_pred eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccc--ceeeeeeeEEcCCCCEEEEeec
Q 008844 235 SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSI--TKMHWKAPCFSGDGEWVIAGSA 312 (551)
Q Consensus 235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~s~dg~~l~~gs~ 312 (551)
+.|++|++||+.. +.++..+..+.... ....+.+++|+|+|++|++|+.
T Consensus 268 s~D~~i~lwd~~~-----------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 318 (380)
T 3iz6_a 268 SDDGTCRLFDMRT-----------------------------GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS 318 (380)
T ss_dssp CSSSCEEEEETTT-----------------------------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred cCCCeEEEEECCC-----------------------------CcEEEEecccccccccccCceEEEEECCCCCEEEEEEC
Confidence 9999999999322 22333332221110 0001238999999999999999
Q ss_pred cCCcceEEEEecC-CceeEEE----ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 313 SKGEHKIYIWDRA-GYLVKIL----EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 313 ~~~dg~I~iwd~~-~~~~~~l----~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+|.|+|||+. ++.+..+ .+|...|++++|+|++.+|++++.||+|+||++....
T Consensus 319 ---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 319 ---NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ---CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999998 8887777 6799999999999999999999999999999998653
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.4e-40 Score=317.67 Aligned_cols=290 Identities=23% Similarity=0.408 Sum_probs=249.7
Q ss_pred eecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEc
Q 008844 17 IEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 17 l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~ 96 (551)
.....|.+.|++++|+|+|++||+|+.||.|+||++.+++....+.+| ...|.+++|+|++++|++++.|+.|++||+
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC--CCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 333458899999999999999999999999999999999988888765 899999999999999999999999999999
Q ss_pred CCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 97 ~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.+++.+..+..+.. +..+.|+|++. ++++++.++.+++||+.++....... .|...
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~~ 151 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSN---LIVSGSFDESVRIWDVKTGKCLKTLP--------------------AHSDP 151 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSCEEEEETTTCCEEEEEC--------------------CCSSC
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCEEEEEec--------------------CCCCc
Confidence 99999999987754 77889999754 89999999999999999887543321 12338
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
+.+++|+|++.+|++|+.||.|++||+++++.+..+...+...+..++|+|++++|++++.|+.|++||+.
T Consensus 152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~--------- 222 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS--------- 222 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT---------
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC---------
Confidence 99999999999999999999999999999998877765677889999999999999999999999999932
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEE-cCCCCEEEEeeccCCcceEEEEecC-CceeEEEe
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCF-SGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
...++..+..|......+ ...+ .+++.+|++|+. ||.|++||+. ++++..+.
T Consensus 223 --------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 223 --------------------KGKCLKTYTGHKNEKYCI---FANFSVTGGKWIVSGSE---DNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp --------------------TTEEEEEECSSCCSSSCC---CEEEECSSSCEEEECCT---TSCEEEEETTTCCEEEEEC
T ss_pred --------------------CCcEEEEEEecCCceEEE---EEEEEeCCCcEEEEECC---CCEEEEEECCCchhhhhhh
Confidence 244555666665544322 2334 468899999999 9999999999 99999999
Q ss_pred cCCCceEEEEEecCCCeEEEEc--CCCcEEEEecC
Q 008844 334 GPKEALIDLAWHPVHPIIVSVS--LTGWVYIWAKD 366 (551)
Q Consensus 334 ~h~~~v~~l~~sp~~~~l~s~s--~dg~i~iW~~~ 366 (551)
+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 277 ~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 277 GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999999999999987 59999999964
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3e-40 Score=349.76 Aligned_cols=355 Identities=14% Similarity=0.167 Sum_probs=258.5
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce--eeEeec-----------------
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI--AKELRD----------------- 63 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~--~~~~~~----------------- 63 (551)
+.||++.++.....+.. |...|++++|+|+|++||+|+.||+|+|||+.++.. ...+.+
T Consensus 41 v~l~~~~~~~~~~~~~~--h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l 118 (611)
T 1nr0_A 41 VYTVPVGSLTDTEIYTE--HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 118 (611)
T ss_dssp EEEEETTCSSCCEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred EEEecCCCcccCeEecC--CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEE
Confidence 67899988777666655 889999999999999999999999999999864321 111111
Q ss_pred -------------------------ccccccEEEEEecCCCC-EEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEE
Q 008844 64 -------------------------KECVAAITSVCWSKYGH-RILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARL 116 (551)
Q Consensus 64 -------------------------~~h~~~V~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~ 116 (551)
.+|...|++++|+|++. +|++++.|++|++||..+++++..+..|. .+.+++|
T Consensus 119 ~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~f 198 (611)
T 1nr0_A 119 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 198 (611)
T ss_dssp EEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred EEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEE
Confidence 23567788888888876 59999999999999999999888888776 4789999
Q ss_pred ecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCce
Q 008844 117 HPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGE 196 (551)
Q Consensus 117 ~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~ 196 (551)
+|++. ++++++.|+.+++||+.++......... ......|...|.+++|+|+|++|++|+.|++
T Consensus 199 spdg~---~las~s~D~~i~lwd~~~g~~~~~~~~~-------------~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~ 262 (611)
T 1nr0_A 199 NPDGS---LFASTGGDGTIVLYNGVDGTKTGVFEDD-------------SLKNVAHSGSVFGLTWSPDGTKIASASADKT 262 (611)
T ss_dssp CTTSS---EEEEEETTSCEEEEETTTCCEEEECBCT-------------TSSSCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCC---EEEEEECCCcEEEEECCCCcEeeeeccc-------------cccccccCCCEEEEEECCCCCEEEEEeCCCe
Confidence 99864 8999999999999999888765432100 0011235568999999999999999999999
Q ss_pred EEEEECCCCcEEEeee------------------------------------------ccCccceEEEEEeeCCCEEEEe
Q 008844 197 ILVIDHKSNQIRALVP------------------------------------------VSGAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 197 i~i~d~~~~~~~~~~~------------------------------------------~~~~~~i~~l~~s~~g~~l~t~ 234 (551)
|++||+.+++.+..+. ..|...|++++|+|+|++|+++
T Consensus 263 v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~ 342 (611)
T 1nr0_A 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA 342 (611)
T ss_dssp EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 9999999877654332 2578899999999999999999
Q ss_pred eCCCeEEEEeCcCCccccch------hhhhhhc---c-CCC--C-Ccceeeeecc-------------------------
Q 008844 235 SNDRTIRIYDNLLPLKNGLE------ALVDIEK---G-IAE--P-NGIEKMKMVG------------------------- 276 (551)
Q Consensus 235 s~Dg~i~iwd~~~~~~~~~~------~~~~~~~---~-~~~--~-~~~~~~~~~~------------------------- 276 (551)
+.|++|++||+......... .+..+.. . ... . ..+..+...+
T Consensus 343 s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 422 (611)
T 1nr0_A 343 DAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 422 (611)
T ss_dssp ETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred eCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCC
Confidence 99999999995432110000 0000000 0 000 0 0000000000
Q ss_pred --------ceeeeeec-------ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce--eEEEecCCCc
Q 008844 277 --------SKCLALFR-------EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL--VKILEGPKEA 338 (551)
Q Consensus 277 --------~~~~~~~~-------~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~--~~~l~~h~~~ 338 (551)
...+..+. .+... +.+++|+|+|++||+|+. |+.|+||++. +.+ +.. .+|...
T Consensus 423 g~~~~~~~~~~v~~~~~~~~~~~~~~~~-----v~~va~spdg~~lasgs~---D~~v~lwd~~~~~~~~~~~-~~h~~~ 493 (611)
T 1nr0_A 423 GDIAVAACYKHIAIYSHGKLTEVPISYN-----SSCVALSNDKQFVAVGGQ---DSKVHVYKLSGASVSEVKT-IVHPAE 493 (611)
T ss_dssp SSCEEEEESSEEEEEETTEEEEEECSSC-----EEEEEECTTSCEEEEEET---TSEEEEEEEETTEEEEEEE-EECSSC
T ss_pred CcEEEEEeCceEEEEeCCceeeeecCCC-----ceEEEEeCCCCEEEEeCC---CCeEEEEEccCCceeeeec-cCCCCc
Confidence 00000000 01122 348999999999999999 9999999998 433 233 679999
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEecCC-CCc-----c---------eeecCCcceecee
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWAKDY-TEN-----W---------SAFAPDFKELEEN 384 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~~~~-~~~-----~---------~~~spd~~~l~~~ 384 (551)
|++|+|+|++++|++++.|++|++|++.+ .+. + .+|+||++.|+..
T Consensus 494 v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 554 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEE
Confidence 99999999999999999999999999976 211 1 2799999988754
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5e-40 Score=324.02 Aligned_cols=282 Identities=16% Similarity=0.225 Sum_probs=238.7
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC--
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG-- 99 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~-- 99 (551)
|.+.|+|++|+|++++||+|+.||+|+|||..++.....+..+ ...|.+++|+|++.+|++++.|+.+++|++...
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~--~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP--CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC--CCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 8899999999999999999999999999999999888888765 789999999999999999999999999998643
Q ss_pred ----eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 100 ----EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 100 ----~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
.....+..|. .+..+.|+|++. .+++++.|+.+++||+.++....... .|..
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~t~s~D~~v~lwd~~~~~~~~~~~--------------------~h~~ 197 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDM---QILTASGDGTCALWDVESGQLLQSFH--------------------GHGA 197 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSS
T ss_pred ccccccceeeeccCCcEEEEEEeCCCC---EEEEEeCCCcEEEEeCCCCeEEEEEc--------------------CCCC
Confidence 2233444444 577889998754 79999999999999999987654321 2333
Q ss_pred CceEEEEee--CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcccc
Q 008844 175 TPTAACFNK--YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 175 ~i~~~~~s~--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
.+.+++|+| +|++|++|+.||.|++||+++++++..+. .|...|++++|+|++.+|++++.|++|++||+..
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~----- 271 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRA----- 271 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----
T ss_pred CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-----
Confidence 788999987 57899999999999999999999988876 7899999999999999999999999999999322
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEE
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKI 331 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~ 331 (551)
...+..+..+.. ...+.+++|+|+|++|++|+. |+.|+|||+. +..+..
T Consensus 272 ------------------------~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~~~~ 321 (354)
T 2pbi_B 272 ------------------------DREVAIYSKESI---IFGASSVDFSLSGRLLFAGYN---DYTINVWDVLKGSRVSI 321 (354)
T ss_dssp ------------------------TEEEEEECCTTC---CSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCSEEEE
T ss_pred ------------------------CcEEEEEcCCCc---ccceeEEEEeCCCCEEEEEEC---CCcEEEEECCCCceEEE
Confidence 122222222111 112238899999999999999 9999999998 999999
Q ss_pred EecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 332 LEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 332 l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
+.+|...|++++|+|++++|++++.||+|+||+
T Consensus 322 l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 322 LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999996
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=324.33 Aligned_cols=306 Identities=16% Similarity=0.248 Sum_probs=237.3
Q ss_pred ccc-eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeE-eecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 22 EHG-VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKE-LRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 22 h~~-~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
|.. .|.+++|+|+|++||+|+.|++|+||++.++..... ....+|...|.+++|+|++++|++++.|++|++|++..+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~ 93 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD 93 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence 665 899999999999999999999999999988764432 222456999999999999999999999999999999876
Q ss_pred e--EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 100 E--KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 100 ~--~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
. ++..+..|. .+..+.|+|++. ++++++.|+.+++||+..+........ ...|...|
T Consensus 94 ~~~~~~~~~~h~~~v~~v~~sp~~~---~l~s~s~D~~v~iwd~~~~~~~~~~~~-----------------~~~h~~~v 153 (345)
T 3fm0_A 94 DFECVTTLEGHENEVKSVAWAPSGN---LLATCSRDKSVWVWEVDEEDEYECVSV-----------------LNSHTQDV 153 (345)
T ss_dssp -EEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEEECTTSCEEEEEE-----------------ECCCCSCE
T ss_pred CeEEEEEccCCCCCceEEEEeCCCC---EEEEEECCCeEEEEECCCCCCeEEEEE-----------------ecCcCCCe
Confidence 4 456666664 588999999754 899999999999999987653221111 11233489
Q ss_pred eEEEEeeCCCEEEEEecCceEEEEECCCCcE--EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 177 TAACFNKYGDLVYVGNSKGEILVIDHKSNQI--RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.+++|+|++.+|++|+.||.|++||+.++.. ...+. .|...|++++|+|+|++|++++.|++|+||+...+......
T Consensus 154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 154 KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232 (345)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc
Confidence 9999999999999999999999999988764 34443 78999999999999999999999999999994332111000
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc-----
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY----- 327 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~----- 327 (551)
.. . .......++..+.+ |...|. +++|+|++.+|++++. |+.|++|+.. +.
T Consensus 233 ~~---------~-----~~~~~~~~~~~~~~~h~~~v~-----~v~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 233 AC---------S-----GSDPSWKCICTLSGFHSRTIY-----DIAWCQLTGALATACG---DDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp CC---------C--------CEEEEEEEECSSCSSCEE-----EEEECTTTCCEEEEET---TSCEEEEEECTTSCTTSC
T ss_pred ee---------e-----ccCCccceeEEecCCCCCcEE-----EEEEecCCCEEEEEeC---CCeEEEEEeCCCCCccee
Confidence 00 0 00011233444444 556666 8999999999999999 9999999987 32
Q ss_pred ----eeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCCCc
Q 008844 328 ----LVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 328 ----~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~~~ 370 (551)
....+.+|...|++|+|+|+++ +||+++.||+|+||++.+.+.
T Consensus 291 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 291 TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred eEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 1123357999999999999985 999999999999999987654
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-40 Score=352.30 Aligned_cols=323 Identities=16% Similarity=0.246 Sum_probs=251.7
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeec-----ccccccEEEEEec
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRD-----KECVAAITSVCWS 76 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~-----~~h~~~V~~l~~s 76 (551)
.++|||..++++...+.. |...|.+++|+|+|++||+|+.|++|+|||+.+++.+..+.. .+|...|.+++|+
T Consensus 171 ~v~lwd~~~~~~~~~l~~--H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGE--HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp CEEEEETTTBEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred eEEEEECCCCeEeeeecc--ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 478999887766666554 889999999999999999999999999999999988877742 1469999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeEEEEEE-------------------------------------------cC-CCee
Q 008844 77 KYGHRILVSAADKSLTLWDVLKGEKITRIV-------------------------------------------LQ-QTPL 112 (551)
Q Consensus 77 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------------------------------------~~-~~~~ 112 (551)
|++++|++++.|++|++||+.+++++..+. .| ..+.
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~ 328 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT 328 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence 999999999999999999999887765543 22 2467
Q ss_pred EEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccc----------cCCC-----------------CCCCCCC---
Q 008844 113 QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIA----------VPDV-----------------ANGIAPS--- 162 (551)
Q Consensus 113 ~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~----------~~~~-----------------~~~~~~~--- 162 (551)
.++|+|++. ++++++.|+.+++||+.++........ .... .......
T Consensus 329 ~l~~spdg~---~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~ 405 (611)
T 1nr0_A 329 ALSSSADGK---TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKA 405 (611)
T ss_dssp EEEECTTSS---EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSC
T ss_pred EEEEeCCCC---EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccce
Confidence 888999764 899999999999999988765332100 0000 0000000
Q ss_pred ---------------CCC-----------------CCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEe
Q 008844 163 ---------------SRN-----------------KYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRAL 210 (551)
Q Consensus 163 ---------------~~~-----------------~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~ 210 (551)
... ......+...+.+++|+|+|++|++|+.||+|++||+.++.....
T Consensus 406 ~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~ 485 (611)
T 1nr0_A 406 VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV 485 (611)
T ss_dssp CEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE
T ss_pred eeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee
Confidence 000 000001345688999999999999999999999999988754322
Q ss_pred eeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee--eeccccc
Q 008844 211 VPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA--LFREFQD 288 (551)
Q Consensus 211 ~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 288 (551)
....|...|++++|+|+|++|++++.|++|++|++... ...+. .+..|..
T Consensus 486 ~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~----------------------------~~~~~~~~~~~H~~ 537 (611)
T 1nr0_A 486 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN----------------------------FELAHTNSWTFHTA 537 (611)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT----------------------------TEESCCCCCCCCSS
T ss_pred eccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC----------------------------Cceeeeeeeeeccc
Confidence 22378999999999999999999999999999993210 11121 1234777
Q ss_pred ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc-ee-EEEecC-CCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 289 SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY-LV-KILEGP-KEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 289 ~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~-~~-~~l~~h-~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
.|. +++|+|+|++||+|+. |+.|+||++. +. .+ ..+.+| ...|.+++|+|++. |++++.|++|++|+
T Consensus 538 ~V~-----~v~fspdg~~lasgs~---D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 538 KVA-----CVSWSPDNVRLATGSL---DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp CEE-----EEEECTTSSEEEEEET---TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cee-----EEEECCCCCEEEEEEC---CCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 777 8999999999999999 9999999998 43 44 677889 89999999999998 99999999999999
Q ss_pred cC
Q 008844 365 KD 366 (551)
Q Consensus 365 ~~ 366 (551)
+.
T Consensus 609 ~~ 610 (611)
T 1nr0_A 609 VP 610 (611)
T ss_dssp CC
T ss_pred cc
Confidence 73
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.9e-40 Score=327.62 Aligned_cols=298 Identities=18% Similarity=0.325 Sum_probs=247.0
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeeccc----------------ccccEEEEEecCCCCEEE
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKE----------------CVAAITSVCWSKYGHRIL 83 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~----------------h~~~V~~l~~s~~g~~l~ 83 (551)
+.|.+.|.|++|+|+|++||+|+ ++.++||++.++..+..+..+. +...|++++|+|+|++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 35889999999999999999987 6899999999999888776541 122499999999999999
Q ss_pred EEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 84 VSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 84 s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
+|+.|++|+|||+.+++.+..+..|. .+..+.|+|++. .+++++.|+.+++||+.++........
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~---~l~s~s~d~~v~iwd~~~~~~~~~~~~----------- 205 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD---KLVSGSGDRTVRIWDLRTGQCSLTLSI----------- 205 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEEC-----------
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC---EEEEecCCCcEEEEECCCCeeEEEEEc-----------
Confidence 99999999999999999998888775 478999999864 789999999999999998876433211
Q ss_pred CCCCCCCCCCCCCceEEEEee-CCCEEEEEecCceEEEEECCCCcEEEeee------ccCccceEEEEEeeCCCEEEEee
Q 008844 163 SRNKYSDGTPPFTPTAACFNK-YGDLVYVGNSKGEILVIDHKSNQIRALVP------VSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~------~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
...+.+++|+| ++++|++|+.||.|++||+.++..+..+. ..|...|.+++|+|+|++|++++
T Consensus 206 ----------~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 206 ----------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp ----------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred ----------CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 11789999999 89999999999999999999998876652 26889999999999999999999
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKG 315 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~ 315 (551)
.|++|++||+........ ........+...+.+|...|. +++|+|++.+|++|+.
T Consensus 276 ~d~~v~~wd~~~~~~~~~-----------------~~~~~~~~~~~~~~~h~~~v~-----~~~~~~~~~~l~sgs~--- 330 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSD-----------------SKTPNSGTCEVTYIGHKDFVL-----SVATTQNDEYILSGSK--- 330 (393)
T ss_dssp TTSEEEEEEC--------------------------------CEEEEEECCSSCEE-----EEEECGGGCEEEEEET---
T ss_pred CCCEEEEEECCCCCCccc-----------------ccCCCCCcceEEEecccCcEE-----EEEECCCCCEEEEEeC---
Confidence 999999999432110000 000112345566778888877 8899999999999999
Q ss_pred cceEEEEecC-CceeEEEecCCCceEEEEEec------CCCeEEEEcCCCcEEEEecCC
Q 008844 316 EHKIYIWDRA-GYLVKILEGPKEALIDLAWHP------VHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 316 dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp------~~~~l~s~s~dg~i~iW~~~~ 367 (551)
|+.|++||+. ++++..+.+|...|.+++|++ ++++|++++.||+|+||++..
T Consensus 331 D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 331 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999 999999999999999999986 678999999999999999864
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.6e-39 Score=311.90 Aligned_cols=281 Identities=16% Similarity=0.236 Sum_probs=235.0
Q ss_pred ccceEEEEEEcCCC-CEEEEEeCCCeEEEEeccCC-----ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 22 EHGVMKCIAFNRRG-TLLAAGCSDGSCVIWDFETR-----GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 22 h~~~V~~l~fs~dg-~~latg~~dg~I~iwd~~~~-----~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
|.+.|++++|+|++ ++|++|+.|++|++|++.+. ..+..+.+| ...|.+++|+|++++|++++.|++|+|||
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH--SHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC--cccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 88999999999965 89999999999999998643 345566655 89999999999999999999999999999
Q ss_pred cCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
+.+++.+..+..|. .+..+.|+|++. ++++++.|+.+++||+.......+ ..|..
T Consensus 94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~s~D~~i~vwd~~~~~~~~~---------------------~~h~~ 149 (319)
T 3frx_A 94 VATGETYQRFVGHKSDVMSVDIDKKAS---MIISGSRDKTIKVWTIKGQCLATL---------------------LGHND 149 (319)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSC---EEEEEETTSCEEEEETTSCEEEEE---------------------CCCSS
T ss_pred CCCCCeeEEEccCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCeEEEE---------------------eccCC
Confidence 99999999998776 478899999754 899999999999999975433221 12333
Q ss_pred CceEEEEeeC------CCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCC
Q 008844 175 TPTAACFNKY------GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 175 ~i~~~~~s~~------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~ 248 (551)
.+.+++|.|. +.+|++|+.|+.|++||+++.+....+. .|...|.+++|+|+|++|++++.||+|+|||+.
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~-- 226 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLA-- 226 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETT--
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--
Confidence 7899999885 4589999999999999999998877775 899999999999999999999999999999932
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY 327 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~ 327 (551)
...++..+.. ...+. +++|+|++.+|++++. ..|++|++. +.
T Consensus 227 ---------------------------~~~~~~~~~~-~~~v~-----~~~~sp~~~~la~~~~----~~i~v~~~~~~~ 269 (319)
T 3frx_A 227 ---------------------------AKKAMYTLSA-QDEVF-----SLAFSPNRYWLAAATA----TGIKVFSLDPQY 269 (319)
T ss_dssp ---------------------------TTEEEEEEEC-CSCEE-----EEEECSSSSEEEEEET----TEEEEEEETTEE
T ss_pred ---------------------------CCcEEEEecC-CCcEE-----EEEEcCCCCEEEEEcC----CCcEEEEeCcCe
Confidence 1334444443 33444 8999999999999885 559999998 66
Q ss_pred eeEEEec--------CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 328 LVKILEG--------PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 328 ~~~~l~~--------h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
.+..+.. |...+.+++|+|++++|++++.||.|+||++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 6666543 4567999999999999999999999999998753
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.8e-39 Score=315.83 Aligned_cols=284 Identities=17% Similarity=0.243 Sum_probs=229.2
Q ss_pred ccceEEEEEE-----cC-CCCEEEEEeCCCeEEEEeccCC-------ceeeEeecccccccEEEEEecCCCCEEEEEeCC
Q 008844 22 EHGVMKCIAF-----NR-RGTLLAAGCSDGSCVIWDFETR-------GIAKELRDKECVAAITSVCWSKYGHRILVSAAD 88 (551)
Q Consensus 22 h~~~V~~l~f-----s~-dg~~latg~~dg~I~iwd~~~~-------~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d 88 (551)
|.+.|++++| ++ ++++||+|+.|++|+|||+.+. .....+.+ |...|.+++|+|++.+|++++.|
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~--h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG--HNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC--CSSCEEEEEECSSTTEEEEEETT
T ss_pred chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc--CCCceEEEEECCCCCEEEEEcCC
Confidence 8899999999 76 9999999999999999999753 34455655 48999999999999999999999
Q ss_pred CCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCC
Q 008844 89 KSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKY 167 (551)
Q Consensus 89 g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (551)
++|++||+.+++.+..+..|. .+.++.|+|++. ++++++.++.+++||+.........
T Consensus 98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~---~l~s~~~d~~i~~wd~~~~~~~~~~------------------ 156 (343)
T 2xzm_R 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR---QILSAGAEREIKLWNILGECKFSSA------------------ 156 (343)
T ss_dssp SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT---EEEEEETTSCEEEEESSSCEEEECC------------------
T ss_pred CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC---EEEEEcCCCEEEEEeccCCceeeee------------------
Confidence 999999999999999998775 578999999864 7899999999999999743322110
Q ss_pred CCCCCCCCceEEEEeeCC----------CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 168 SDGTPPFTPTAACFNKYG----------DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 168 ~~~~~~~~i~~~~~s~~g----------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
....|...+.+++|+|++ .+|++++.||.|++||. .......+. .|...|.+++|+|+|++|++++.|
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~d 234 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKD 234 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECCCCCEEEEEcCC
Confidence 011234479999999987 78999999999999994 445555554 789999999999999999999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
+.|++||+... ......+ .+...+. +++|+|++.+|+++. ++
T Consensus 235 g~v~iwd~~~~----------------------------~~~~~~~-~~~~~v~-----~v~~sp~~~~la~~~----d~ 276 (343)
T 2xzm_R 235 KKLLIWDILNL----------------------------TYPQREF-DAGSTIN-----QIAFNPKLQWVAVGT----DQ 276 (343)
T ss_dssp CEEEEEESSCC----------------------------SSCSEEE-ECSSCEE-----EEEECSSSCEEEEEE----SS
T ss_pred CeEEEEECCCC----------------------------cccceee-cCCCcEE-----EEEECCCCCEEEEEC----CC
Confidence 99999993211 0111111 1223344 899999999988765 67
Q ss_pred eEEEEecC-CceeE--EEe-----------cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 318 KIYIWDRA-GYLVK--ILE-----------GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 318 ~I~iwd~~-~~~~~--~l~-----------~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
.|+||++. +.... .+. +|...|.+++|+|++++|++++.||.|++|++.++
T Consensus 277 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 89999998 54433 443 67888999999999999999999999999998764
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=317.07 Aligned_cols=282 Identities=12% Similarity=0.179 Sum_probs=226.4
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC-----------ceeeEeecccccccEEEEEecCCCCEEEEEeCCCC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-----------GIAKELRDKECVAAITSVCWSKYGHRILVSAADKS 90 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~-----------~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~ 90 (551)
|...|.+++|+|||++|++++ |+++++||.... ...... ..|...|.+++|+|++ .|++|+.||+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG--VQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE--EEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee--eccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 567899999999999999887 778888874211 111111 1236789999999985 6889999999
Q ss_pred EEEEEcCCCeEEEEE----EcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCC
Q 008844 91 LTLWDVLKGEKITRI----VLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRN 165 (551)
Q Consensus 91 i~vwd~~~~~~~~~~----~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (551)
|+|||+.+++.+..+ ..| ..+.+++|+|++. ++++++.++.|++||+.++......
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~---~l~sgs~d~~i~iwd~~~~~~~~~~---------------- 165 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT---QAVSGSKDICIKVWDLAQQVVLSSY---------------- 165 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE----------------
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC---EEEEEeCCCeEEEEECCCCcEEEEE----------------
Confidence 999999988754433 234 4588999999865 8999999999999999998765432
Q ss_pred CCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEeeC-CCEEEEeeCCCeEEE
Q 008844 166 KYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSRN-GQYLLTNSNDRTIRI 242 (551)
Q Consensus 166 ~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~-g~~l~t~s~Dg~i~i 242 (551)
..|...|++++|++++ .+|++|+.||+|++||+++++....+.. .+...+.+++|+|+ +++|++|+.||+|+|
T Consensus 166 ----~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~ 241 (344)
T 4gqb_B 166 ----RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL 241 (344)
T ss_dssp ----CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ----cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence 1234489999999998 5789999999999999999988776642 45567999999995 568899999999999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC-CEEEEeeccCCcceEEE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG-EWVIAGSASKGEHKIYI 321 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg-~~l~~gs~~~~dg~I~i 321 (551)
||+ ....++..+.+|...|+ +++|+|+| ++|++|+. |+.|+|
T Consensus 242 wd~-----------------------------~~~~~~~~~~~h~~~v~-----~v~fsp~g~~~lasgs~---D~~i~v 284 (344)
T 4gqb_B 242 VDT-----------------------------KSTSCVLSSAVHSQCVT-----GLVFSPHSVPFLASLSE---DCSLAV 284 (344)
T ss_dssp EES-----------------------------CC--CCEEEECCSSCEE-----EEEECSSSSCCEEEEET---TSCEEE
T ss_pred EEC-----------------------------CCCcEEEEEcCCCCCEE-----EEEEccCCCeEEEEEeC---CCeEEE
Confidence 992 23556778888998887 89999998 58999999 999999
Q ss_pred EecC-CceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCCC
Q 008844 322 WDRA-GYLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 322 wd~~-~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~~ 368 (551)
||+. +++ ..+.+|.+.|++|+|+|+++ +|+++|.||+|++|++.+.
T Consensus 285 wd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 285 LDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 9999 654 45789999999999999987 5779999999999999764
No 15
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-38 Score=313.80 Aligned_cols=308 Identities=17% Similarity=0.207 Sum_probs=257.1
Q ss_pred CCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC
Q 008844 10 QGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK 89 (551)
Q Consensus 10 ~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg 89 (551)
.|...+.+....|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+.+| ...|.+++|+|++++|++++.|+
T Consensus 19 ~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~dg 96 (369)
T 3zwl_B 19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH--TGTIWSIDVDCFTKYCVTGSADY 96 (369)
T ss_dssp SCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTT
T ss_pred eccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc--CCcEEEEEEcCCCCEEEEEeCCC
Confidence 5666666666669999999999999999999999999999999999999998765 89999999999999999999999
Q ss_pred CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCC-----CCcEEEEcCCCceeeeccccCCCCCCCCCCCC
Q 008844 90 SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS-----SAPMIVDLSTGSTSILPIAVPDVANGIAPSSR 164 (551)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (551)
.|++||+.+++.+..+.....+..+.|+|++. +++++..+ +.+.+|++................ .
T Consensus 97 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~-------~ 166 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN---YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP-------I 166 (369)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECTTSS---EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC-------S
T ss_pred eEEEEECCCCcEEEEeecCCCeEEEEEccCCC---EEEEecCCccCCCCEEEEEEecCCccceeecccccce-------e
Confidence 99999999999999999888899999999864 78888888 999999998765322111111000 0
Q ss_pred CCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCC-CcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 165 NKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKS-NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
...........+.+++|+|++++|++|+.+|.|++||+.+ ...+..+. .|...|.+++|+|++++|++++.|+.|++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 245 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLV 245 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence 0000111122799999999999999999999999999999 66666665 788999999999999999999999999999
Q ss_pred eCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc------
Q 008844 244 DNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH------ 317 (551)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg------ 317 (551)
|+.. ...+..+. +...+. .++|+|+++++++++. ++
T Consensus 246 d~~~-----------------------------~~~~~~~~-~~~~~~-----~~~~~~~~~~l~~~~~---~~~~~~~~ 287 (369)
T 3zwl_B 246 DVST-----------------------------LQVLKKYE-TDCPLN-----TAVITPLKEFIILGGG---QEAKDVTT 287 (369)
T ss_dssp ETTT-----------------------------CCEEEEEE-CSSCEE-----EEEECSSSSEEEEEEC---CC------
T ss_pred ECCC-----------------------------Cceeeeec-CCCCce-----eEEecCCCceEEEeec---CCCceEEE
Confidence 9321 23333333 444444 8899999999999998 66
Q ss_pred --------eEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 318 --------KIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 318 --------~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
.|++|++. ++++..+.+|...|++++|+|++++|++++.||.|+||++...
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 89999999 9999999999999999999999999999999999999999764
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.3e-40 Score=322.72 Aligned_cols=285 Identities=14% Similarity=0.177 Sum_probs=224.4
Q ss_pred ccceEEEEEEcCCCCEEEEEeC------CCeEEEEeccCCceeeEee--cccccccEEEEEecCCCCEEEEEeCCCCEEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCS------DGSCVIWDFETRGIAKELR--DKECVAAITSVCWSKYGHRILVSAADKSLTL 93 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~------dg~I~iwd~~~~~~~~~~~--~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v 93 (551)
|.+.|++++|||||++||+|+. |+.|++|+..++.....+. ...|...|++++|+|++. +++++.|++|+|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~l 119 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVEL 119 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEE
Confidence 8899999999999999999997 7889999987765433221 123588999999999875 566788999999
Q ss_pred EEcCCCeEEEEE----EcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCC
Q 008844 94 WDVLKGEKITRI----VLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 94 wd~~~~~~~~~~----~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
||+.+++..... ..| ..+.++.|+|++. ++++++.++.|++||+.++.......
T Consensus 120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~l~sgs~dg~v~iwd~~~~~~~~~~~------------------ 178 (357)
T 4g56_B 120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT---QAVSGGKDFSVKVWDLSQKAVLKSYN------------------ 178 (357)
T ss_dssp C--------CCCCEEECCCSSCEEEEEECSSSS---EEEEEETTSCEEEEETTTTEEEEEEC------------------
T ss_pred eeccccceeEEEeeccCCCCCCEEEEEECCCCC---EEEEEeCCCeEEEEECCCCcEEEEEc------------------
Confidence 999888654322 223 4688999999864 79999999999999999887654321
Q ss_pred CCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEeeC-CCEEEEeeCCCeEEEEeC
Q 008844 169 DGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSRN-GQYLLTNSNDRTIRIYDN 245 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd~ 245 (551)
.|...|++++|++++ .++++++.||.|++||+++++....+.. .+...+++++|+|+ +.+|++++.|+.|++||+
T Consensus 179 --~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 179 --AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp --CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred --CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEEC
Confidence 233489999999998 4789999999999999999887655432 46778999999997 468899999999999993
Q ss_pred cCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC-CEEEEeeccCCcceEEEEec
Q 008844 246 LLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG-EWVIAGSASKGEHKIYIWDR 324 (551)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg-~~l~~gs~~~~dg~I~iwd~ 324 (551)
. ...++..+..|...|. +++|+|++ ++|++|+. |+.|+|||+
T Consensus 257 ~-----------------------------~~~~~~~~~~~~~~v~-----~l~~sp~~~~~lasgs~---D~~i~iwd~ 299 (357)
T 4g56_B 257 K-----------------------------NPDSAQTSAVHSQNIT-----GLAYSYHSSPFLASISE---DCTVAVLDA 299 (357)
T ss_dssp S-----------------------------CGGGCEEECCCSSCEE-----EEEECSSSSCCEEEEET---TSCEEEECT
T ss_pred C-----------------------------CCcEeEEEeccceeEE-----EEEEcCCCCCEEEEEeC---CCEEEEEEC
Confidence 2 2445667778888887 89999987 68999999 999999999
Q ss_pred C-CceeEEEecCCCceEEEEEec-CCCeEEEEcCCCcEEEEecCCC
Q 008844 325 A-GYLVKILEGPKEALIDLAWHP-VHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 325 ~-~~~~~~l~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
. ++++..+ +|...|++|+|+| ++.+|+|++.||+|++|++...
T Consensus 300 ~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 300 DFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9 7776655 7999999999999 7889999999999999999754
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.4e-38 Score=306.62 Aligned_cols=285 Identities=16% Similarity=0.228 Sum_probs=231.9
Q ss_pred cccceEEEEEEcCC-CCEEEEEeCCCeEEEEeccCCc-----eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEE
Q 008844 21 LEHGVMKCIAFNRR-GTLLAAGCSDGSCVIWDFETRG-----IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLW 94 (551)
Q Consensus 21 ~h~~~V~~l~fs~d-g~~latg~~dg~I~iwd~~~~~-----~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vw 94 (551)
.|.+.|+||+|+|+ +++||||+.||+|+|||+.+.. ....+.+ |...|.+++|+|++++|++++.|+.|++|
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~--h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--HSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC--CCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 38999999999997 6899999999999999987654 3455554 48999999999999999999999999999
Q ss_pred EcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 95 DVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 95 d~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
+...+........+.. .....+.+.+ ..+++++.++.+.+||+.......... ..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~s~d~~~~~~d~~~~~~~~~~~-------------------~~~~ 171 (340)
T 4aow_A 114 DLTTGTTTRRFVGHTKDVLSVAFSSDN---RQIVSGSRDKTIKLWNTLGVCKYTVQD-------------------ESHS 171 (340)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTS---SCEEEEETTSCEEEECTTSCEEEEECS-------------------SSCS
T ss_pred eecccceeeeecCCCCceeEEEEeecC---ccceeecCCCeEEEEEeCCCceEEEEe-------------------cccc
Confidence 9999888877776654 4556666654 368999999999999988765543322 1233
Q ss_pred CCceEEEEeeCC--CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccc
Q 008844 174 FTPTAACFNKYG--DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 174 ~~i~~~~~s~~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~ 251 (551)
..+.+++|++++ .++++++.|+.|++||+.+++.+..+. .|...|++++|+|++++|++++.|+.|++||+.
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~----- 245 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN----- 245 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETT-----
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec-----
Confidence 378899998775 678899999999999999999888876 789999999999999999999999999999932
Q ss_pred cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeE
Q 008844 252 GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVK 330 (551)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~ 330 (551)
...++..+..+ ..+. .++|+|++.+++++ . ++.|+|||+. +.++.
T Consensus 246 ------------------------~~~~~~~~~~~-~~v~-----~~~~~~~~~~~~~~-~---d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 246 ------------------------EGKHLYTLDGG-DIIN-----ALCFSPNRYWLCAA-T---GPSIKIWDLEGKIIVD 291 (340)
T ss_dssp ------------------------TTEEEEEEECS-SCEE-----EEEECSSSSEEEEE-E---TTEEEEEETTTTEEEE
T ss_pred ------------------------cCceeeeecCC-ceEE-----eeecCCCCceeecc-C---CCEEEEEECCCCeEEE
Confidence 13334444332 3444 88999988766555 4 7999999998 66655
Q ss_pred EEe---------cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 331 ILE---------GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 331 ~l~---------~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
.+. +|...|++++|+|++++|++++.||.|+||++.++.
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 543 578899999999999999999999999999998864
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5e-38 Score=331.10 Aligned_cols=310 Identities=16% Similarity=0.322 Sum_probs=257.7
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.+++||.. ++....+.. |...|++++|+|++++|++++.|+.|++|+.. ++.+..+.+| ...|.+++|+|++++
T Consensus 244 ~i~~w~~~-~~~~~~~~~--~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h--~~~v~~~~~~~~~~~ 317 (577)
T 2ymu_A 244 TVKLWNRN-GQLLQTLTG--HSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH--SSSVWGVAFSPDGQT 317 (577)
T ss_dssp CEEEECTT-SCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCC--SSCEEEEEECTTSSE
T ss_pred EEEEEeCC-CCEEEEEec--CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecC--CCCeEEEEECCCCCE
Confidence 36789853 444444443 78899999999999999999999999999975 6677777665 899999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
|++++.|++|++||+... .+..+..+ ..+..+.|+|++. .+++++.++.+++|+........+
T Consensus 318 l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~dg~v~~~~~~~~~~~~~------------ 381 (577)
T 2ymu_A 318 IASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQ---TIASASDDKTVKLWNRNGQLLQTL------------ 381 (577)
T ss_dssp EEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTCCEEEEE------------
T ss_pred EEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCC---EEEEEeCCCEEEEEcCCCCEEEEe------------
Confidence 999999999999997654 45555554 4578899999865 789999999999999654322211
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
..|...|++++|+|+|++|++++.|+.|++||. +++.+..+. .|...|++++|+|++++|++++.|+.|
T Consensus 382 ---------~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 382 ---------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp ---------ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ---------cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 112338999999999999999999999999996 456666665 889999999999999999999999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
++|+. ....+..+..|...+. +++|+|++++|++++. |+.|+
T Consensus 451 ~~w~~------------------------------~~~~~~~~~~~~~~v~-----~~~~spd~~~las~~~---d~~i~ 492 (577)
T 2ymu_A 451 KLWNR------------------------------NGQLLQTLTGHSSSVR-----GVAFSPDGQTIASASD---DKTVK 492 (577)
T ss_dssp EEEET------------------------------TSCEEEEEECCSSCEE-----EEEECTTSCEEEEEET---TSEEE
T ss_pred EEEEC------------------------------CCCEEEEEcCCCCCEE-----EEEEcCCCCEEEEEeC---CCEEE
Confidence 99992 1344667778888887 8999999999999999 99999
Q ss_pred EEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc------------eeecCCcceece
Q 008844 321 IWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW------------SAFAPDFKELEE 383 (551)
Q Consensus 321 iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~------------~~~spd~~~l~~ 383 (551)
||+..++++..+.+|...|++|+|+|++++|++++.||.|+||+... +.. .+|+||++.|..
T Consensus 493 iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-~~~~~~~~h~~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 493 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp EEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC-CEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99988999999999999999999999999999999999999999753 321 268888877654
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-38 Score=305.08 Aligned_cols=294 Identities=12% Similarity=0.165 Sum_probs=222.2
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC--ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR--GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK- 98 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~--~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~- 98 (551)
|.+.|.+++|+|+ +||+|+.|++|+||++.++ .....+....|...|.+++|+|++++|++++.|++|+||++..
T Consensus 13 h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~ 90 (330)
T 2hes_X 13 YKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEES 90 (330)
T ss_dssp CSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---
T ss_pred CCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccC
Confidence 8899999999987 9999999999999999875 3444453223699999999999999999999999999999853
Q ss_pred ------CeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 99 ------GEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 99 ------~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
...+..+..|. .+..+.|+|++. ++++++.|+.+++||+.......... .....
T Consensus 91 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~---~las~s~D~~v~iwd~~~~~~~~~~~----------------~~~~~ 151 (330)
T 2hes_X 91 ADRTFEMDLLAIIEGHENEVKGVAWSNDGY---YLATCSRDKSVWIWETDESGEEYECI----------------SVLQE 151 (330)
T ss_dssp ----CCCEEEEEEC----CEEEEEECTTSC---EEEEEETTSCEEEEECCTTCCCCEEE----------------EEECC
T ss_pred cCccccceeEEEEcCCCCcEEEEEECCCCC---EEEEEeCCCEEEEEeccCCCCCeEEE----------------EEecc
Confidence 34566666654 588999999854 89999999999999995432110000 00122
Q ss_pred CCCCceEEEEeeCCCEEEEEecCceEEEEECCCC--cEEEeeeccCccceEEEEEeeC--CCEEEEeeCCCeEEEEeCcC
Q 008844 172 PPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN--QIRALVPVSGAAVIKNIVFSRN--GQYLLTNSNDRTIRIYDNLL 247 (551)
Q Consensus 172 ~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~l~~s~~--g~~l~t~s~Dg~i~iwd~~~ 247 (551)
|...|.+++|+|++.+|++|+.||+|++||..++ +++..+. .|...|.+++|+|+ +.+|++++.|++|++|++..
T Consensus 152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 4448999999999999999999999999999876 4555664 79999999999998 77899999999999999321
Q ss_pred CccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-
Q 008844 248 PLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA- 325 (551)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~- 325 (551)
.... . .....+...+.. |...|. +++|++++ +|++++. ||.|+||+..
T Consensus 231 ~~~~----------------~-----~~~~~~~~~~~~~h~~~v~-----~v~~s~~~-~l~s~~~---dg~v~iw~~~~ 280 (330)
T 2hes_X 231 DDED----------------D-----QQEWVCEAILPDVHKRQVY-----NVAWGFNG-LIASVGA---DGVLAVYEEVD 280 (330)
T ss_dssp ECTT----------------S-----CEEEEEEEECCSCCSSCEE-----EEEECTTS-CEEEEET---TSCEEEEEEET
T ss_pred CCcc----------------c-----cceeEEeeecccccccceE-----EEEEcCCC-EEEEEeC---CCEEEEEEcCC
Confidence 1000 0 000122333433 666776 88999765 8889998 9999999998
Q ss_pred Cc--eeEE-EecCCC-ceEEEEEec--CCCeEEEEcCCCcEEEEecCC
Q 008844 326 GY--LVKI-LEGPKE-ALIDLAWHP--VHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 326 ~~--~~~~-l~~h~~-~v~~l~~sp--~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+. .+.. +.+|.. .|.+++|+| ++.+|++++.||.|+||++..
T Consensus 281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 281 GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 53 3333 367877 899999999 688999999999999999864
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.9e-38 Score=330.04 Aligned_cols=291 Identities=16% Similarity=0.330 Sum_probs=248.1
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
+++||.. ++....+.. |...|.+++|+|++++|++++.||+|++|+.... .+..+.+| ...|.+++|+|++++|
T Consensus 286 i~~w~~~-~~~~~~~~~--h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~--~~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 286 VKLWNRN-GQLLQTLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGH--SSSVWGVAFSPDGQTI 359 (577)
T ss_dssp EEEEETT-SCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCC--SSCEEEEEECTTSSEE
T ss_pred EEEEeCC-CcEEEEEec--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCC--CCCEEEEEECCCCCEE
Confidence 6788853 444444443 7899999999999999999999999999998754 45566554 8999999999999999
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 161 (551)
++++.|+.|++|+. +++.+..+..+. .+..+.|+|++. ++++++.++.+++|+........+
T Consensus 360 ~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~---~l~~~~~d~~v~~~~~~~~~~~~~------------- 422 (577)
T 2ymu_A 360 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ---TIASASDDKTVKLWNRNGQLLQTL------------- 422 (577)
T ss_dssp EEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS---CEEEEETTSEEEEECTTCCEEEEE-------------
T ss_pred EEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC---EEEEEeCCCEEEEEeCCCCEEEEe-------------
Confidence 99999999999995 677788887665 578899999865 688999999999999654322211
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEE
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIR 241 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~ 241 (551)
..|...|++++|+|++++|++++.|+.|++||.. ++.+..+. .|...|++++|+|++++|++++.|++|+
T Consensus 423 --------~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 423 --------TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp --------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred --------cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 1233389999999999999999999999999974 55555555 8899999999999999999999999999
Q ss_pred EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEE
Q 008844 242 IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYI 321 (551)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~i 321 (551)
+|+. .+.++..+.+|...|+ +++|+|+|++|++++. |+.|+|
T Consensus 493 iw~~------------------------------~~~~~~~~~~h~~~v~-----~l~~s~dg~~l~s~~~---dg~v~l 534 (577)
T 2ymu_A 493 LWNR------------------------------NGQLLQTLTGHSSSVR-----GVAFSPDGQTIASASD---DKTVKL 534 (577)
T ss_dssp EEET------------------------------TSCEEEEEECCSSCEE-----EEEECTTSSCEEEEET---TSEEEE
T ss_pred EEcC------------------------------CCCEEEEEeCCCCCEE-----EEEEcCCCCEEEEEEC---cCEEEE
Confidence 9991 1455777888888887 8999999999999999 999999
Q ss_pred EecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 322 WDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 322 wd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
||..++++..+.+|...|++++|+|++++|+|++.|++|++||
T Consensus 535 wd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 535 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9988999999999999999999999999999999999999997
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-38 Score=315.45 Aligned_cols=299 Identities=16% Similarity=0.215 Sum_probs=250.8
Q ss_pred Ccccccc----CCCC------ccceeecc--------cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeec
Q 008844 2 NAPIIDP----LQGD------FPEVIEEY--------LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRD 63 (551)
Q Consensus 2 nl~lwd~----~~~~------~~~~l~~~--------~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~ 63 (551)
.|.||+. .++. ....+... .|.+.|++++|+|++++|++|+.||.|++|+ .++..+..+..
T Consensus 69 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~ 147 (425)
T 1r5m_A 69 VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF 147 (425)
T ss_dssp EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC
T ss_pred eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC
Confidence 3678988 7766 22222221 1456999999999999999999999999999 66777888865
Q ss_pred ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC----------------eeEEEEecCCCCCcEEE
Q 008844 64 KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT----------------PLQARLHPGSSTPSLCL 127 (551)
Q Consensus 64 ~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------------~~~~~~~p~~~~~~~~~ 127 (551)
| ...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.. +..+.|+|++ .++
T Consensus 148 ~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 221 (425)
T 1r5m_A 148 H--RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD----KFV 221 (425)
T ss_dssp C--CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT----EEE
T ss_pred C--CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC----EEE
Confidence 5 89999999999999999999999999999999999888876654 6778888864 689
Q ss_pred EeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE
Q 008844 128 ACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207 (551)
Q Consensus 128 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~ 207 (551)
+++.++.+++|++.++....... .+...+.+++|+|++++|++++.+|.|++||+.+++.
T Consensus 222 ~~~~~g~i~~~d~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 222 IPGPKGAIFVYQITEKTPTGKLI--------------------GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp EECGGGCEEEEETTCSSCSEEEC--------------------CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred EEcCCCeEEEEEcCCCceeeeec--------------------cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 99999999999999875443211 2333899999999999999999999999999999988
Q ss_pred EEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc
Q 008844 208 RALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ 287 (551)
Q Consensus 208 ~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (551)
+..+. .|...|.+++|+|++ +|++++.|+.|++||+. ....+..+..|.
T Consensus 282 ~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~-----------------------------~~~~~~~~~~~~ 330 (425)
T 1r5m_A 282 QNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK-----------------------------QNTLLALSIVDG 330 (425)
T ss_dssp SEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETT-----------------------------TTEEEEEEECTT
T ss_pred ceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECC-----------------------------CCcEeEecccCC
Confidence 77775 688999999999999 99999999999999922 244566666777
Q ss_pred cccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc--------------------eeEEEecCCC--ceEEEEE
Q 008844 288 DSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY--------------------LVKILEGPKE--ALIDLAW 344 (551)
Q Consensus 288 ~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~--------------------~~~~l~~h~~--~v~~l~~ 344 (551)
..+. +++|+|++++|++++. +|.|+||++. +. ++..+.+|.. .|++++|
T Consensus 331 ~~i~-----~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 331 VPIF-----AGRISQDGQKYAVAFM---DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW 402 (425)
T ss_dssp CCEE-----EEEECTTSSEEEEEET---TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE
T ss_pred ccEE-----EEEEcCCCCEEEEEEC---CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc
Confidence 7776 8899999999999999 9999999999 77 8899999976 9999999
Q ss_pred ecCCCeEEEEcCCCcEEEEecC
Q 008844 345 HPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 345 sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+|++++|++++.||.|+||++.
T Consensus 403 s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTSSEEEEEESSSCCEEEECC
T ss_pred cCCCceEEEEecCceEEEEeec
Confidence 9999999999999999999985
No 22
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=309.06 Aligned_cols=313 Identities=15% Similarity=0.161 Sum_probs=249.3
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCceeeEeec-----------ccccccE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRGIAKELRD-----------KECVAAI 70 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~~~-----------~~h~~~V 70 (551)
++||+...+.....+.. |.+.|++++|+| ++++||+|+.||.|+||++.++.....+.. ..|...|
T Consensus 25 ~~v~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 25 RRVLGLELNKDRDVERI--HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp HHHHTEEECTTEEECCC--CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred ceeeccccCcceeeeec--cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 57888887776666655 889999999999 999999999999999999998876655542 1368999
Q ss_pred EEEEecC-CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeec
Q 008844 71 TSVCWSK-YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILP 149 (551)
Q Consensus 71 ~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 149 (551)
.+++|+| ++.+|++++.|+.|++||+.++..+..+.....+..+.+.|.+....++++++.++.+.+||+.++......
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 182 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence 9999999 788999999999999999999999999998888999999998877789999999999999999887654321
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC-EEEEEecCceEEEEECCCCcE-EEeee--------------c
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD-LVYVGNSKGEILVIDHKSNQI-RALVP--------------V 213 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~~-~~~~~--------------~ 213 (551)
..|...|++++|+|++. +|++|+.+|.|++||++++.. +..+. .
T Consensus 183 --------------------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 183 --------------------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp --------------------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred --------------------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence 12334899999999998 589999999999999987752 22221 2
Q ss_pred cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee
Q 008844 214 SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293 (551)
Q Consensus 214 ~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 293 (551)
.|...|.+++|+|++++|++++.||.|++||+.... .......+.......
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------------------------~~~~~~~~~~~~~~~ 293 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE-----------------------------NTLVNYGKVCNNSKK 293 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------------BCCCCCCCCCCCCSS
T ss_pred cccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------------------------cceeccccccccccc
Confidence 678899999999999999999999999999933211 111111111000000
Q ss_pred eeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 294 HWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 294 ~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
..........+..+++++. ++.|++||+. ++++..+.+|...|++++|+|++++|++++.||.|++|++.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPY---GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CCCCEECCSSSSCEEEEEE---TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred cceeEEecCCCceEEEEec---CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 0001222334455666666 7999999999 99999999999999999999999999999999999999998765
No 23
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-37 Score=309.87 Aligned_cols=292 Identities=13% Similarity=0.149 Sum_probs=242.7
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc------eeeEeecccccccEEEEEecCC----C---CEEEEEeC
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG------IAKELRDKECVAAITSVCWSKY----G---HRILVSAA 87 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~------~~~~~~~~~h~~~V~~l~~s~~----g---~~l~s~s~ 87 (551)
.|.+.|++++|+| ++||+|+.||.|+||++.++. .+..+.+| ...|++++|+|+ + ++|++++.
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH--KSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC--TTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecC--CCcEEEEEEecccccCCccccEEEEEcC
Confidence 3889999999998 799999999999999999887 67777655 899999999999 9 99999999
Q ss_pred CCCEEEEEcCCCeE-----EEEEEcC------CCeeEEEEe----cCCCCCcE-EEEeeCCCCcEEEEcCC------Cce
Q 008844 88 DKSLTLWDVLKGEK-----ITRIVLQ------QTPLQARLH----PGSSTPSL-CLACPLSSAPMIVDLST------GST 145 (551)
Q Consensus 88 dg~i~vwd~~~~~~-----~~~~~~~------~~~~~~~~~----p~~~~~~~-~~~~~~~~~i~i~d~~~------~~~ 145 (551)
|+.|++|++.++.. +..+..+ ..+..+.|+ |++. . +++++.++.+++||+.. +..
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS---HRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C---EEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc---eEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999998886 7777776 678999999 7643 6 89999999999999987 433
Q ss_pred eeecc--ccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc---C---cc
Q 008844 146 SILPI--AVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS---G---AA 217 (551)
Q Consensus 146 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---~---~~ 217 (551)
..+.. .... .......+...+.+++|+|++ +|++|+.+|.|++||+++++.+..+. . | ..
T Consensus 167 ~~~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~h~~~~~ 234 (397)
T 1sq9_A 167 LNWSPTLELQG----------TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE-SQHSMINNSN 234 (397)
T ss_dssp TCCCCEEEEEE----------EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE-CCC---CCCC
T ss_pred eeccCcceeee----------eeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe-ccccccccCC
Confidence 22000 0000 000002234489999999999 99999999999999999999888876 5 7 89
Q ss_pred ceEEEEEeeCCCEEEEeeCC---CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc---------
Q 008844 218 VIKNIVFSRNGQYLLTNSND---RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE--------- 285 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 285 (551)
.|.+++|+|++++|++++.| +.|++||+.. ...+..+..
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-----------------------------~~~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-----------------------------GERIGSLSVPTHSSQASL 285 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-----------------------------CCEEEEECBC--------
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCC-----------------------------CcccceeccCcccccccc
Confidence 99999999999999999999 9999999321 333445555
Q ss_pred ----cccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEe------cC---------------CCce
Q 008844 286 ----FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE------GP---------------KEAL 339 (551)
Q Consensus 286 ----~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~------~h---------------~~~v 339 (551)
|...+. +++|+|++++|++++. |+.|+|||+. ++++..+. +| ...|
T Consensus 286 ~~~~~~~~v~-----~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v 357 (397)
T 1sq9_A 286 GEFAHSSWVM-----SLSFNDSGETLCSAGW---DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 357 (397)
T ss_dssp CCBSBSSCEE-----EEEECSSSSEEEEEET---TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred cccccCCcEE-----EEEECCCCCEEEEEeC---CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCce
Confidence 677776 8999999999999999 9999999999 99999999 88 9999
Q ss_pred EEEEEecCC----------CeEEEEcCCCcEEEEecCCC
Q 008844 340 IDLAWHPVH----------PIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 340 ~~l~~sp~~----------~~l~s~s~dg~i~iW~~~~~ 368 (551)
++++|+|++ ++|++++.||.|+||++.++
T Consensus 358 ~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 358 FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred eEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999999998 79999999999999999765
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.5e-36 Score=295.10 Aligned_cols=286 Identities=13% Similarity=0.181 Sum_probs=240.2
Q ss_pred eeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce---eeEeecccccccEEEEEecCCCCEEEEEeCCCCEE
Q 008844 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI---AKELRDKECVAAITSVCWSKYGHRILVSAADKSLT 92 (551)
Q Consensus 16 ~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~---~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~ 92 (551)
.+....|...|++++|+|++++|++++ ||.|++|++.++.. +..+....|...|.+++|+|++++|++++.|+.|+
T Consensus 44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 334445889999999999999999998 99999999987653 34444335689999999999999999999999999
Q ss_pred EEEcCCCe--EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 93 LWDVLKGE--KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 93 vwd~~~~~--~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
+||+.+++ ....+..+. .+..+.|+|++. ++++++.++.+++||+.++.......
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~v~~~d~~~~~~~~~~~------------------- 180 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSK---VCFSCCSDGNIAVWDLHNQTLVRQFQ------------------- 180 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEEC-------------------
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCceeeeee-------------------
Confidence 99999887 455555554 478899999754 78999999999999999876543321
Q ss_pred CCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCc
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPL 249 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~ 249 (551)
.+...+.+++|+|++++|++++.+|.|++||+++++.+..+ .+...+.+++|+|++++|++++.++.|++|++...
T Consensus 181 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~- 256 (337)
T 1gxr_A 181 -GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP- 256 (337)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-
T ss_pred -cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-
Confidence 12338999999999999999999999999999999988877 67888999999999999999999999999993221
Q ss_pred cccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce
Q 008844 250 KNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL 328 (551)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~ 328 (551)
. ...+..|...+. +++|+|++++|++++. +|.|++|++. ++.
T Consensus 257 ----------------------------~-~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~---dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 257 ----------------------------D-KYQLHLHESCVL-----SLKFAYCGKWFVSTGK---DNLLNAWRTPYGAS 299 (337)
T ss_dssp ----------------------------C-EEEECCCSSCEE-----EEEECTTSSEEEEEET---TSEEEEEETTTCCE
T ss_pred ----------------------------C-eEEEcCCcccee-----EEEECCCCCEEEEecC---CCcEEEEECCCCeE
Confidence 1 234556667776 8999999999999999 9999999999 777
Q ss_pred eEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 329 VKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 329 ~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+..+ .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 300 ~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 300 IFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 6544 588899999999999999999999999999973
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3e-37 Score=307.89 Aligned_cols=285 Identities=16% Similarity=0.153 Sum_probs=229.7
Q ss_pred cccceEEEEEEcCCC-CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC-CCCEEEEEeCCCCEEEEEcCC
Q 008844 21 LEHGVMKCIAFNRRG-TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK-YGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg-~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~ 98 (551)
.|.+.|++++|+|++ ++||+|+.||.|+|||+.++.....+...+|...|.+++|+| ++++|++++.|+.|++||+.+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence 378999999999999 999999999999999999998888887656799999999999 789999999999999999985
Q ss_pred CeEEEEEEcC----CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 99 GEKITRIVLQ----QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 99 ~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
..+..+..+ ..+..+.|+|++. ++++++.++.+++||+.......+. .|..
T Consensus 151 -~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~---------------------~h~~ 205 (383)
T 3ei3_B 151 -SVIQVFAKTDSWDYWYCCVDVSVSRQ---MLATGDSTGRLLLLGLDGHEIFKEK---------------------LHKA 205 (383)
T ss_dssp -CEEEEEECCCCSSCCEEEEEEETTTT---EEEEEETTSEEEEEETTSCEEEEEE---------------------CSSS
T ss_pred -CceEEEeccCCCCCCeEEEEECCCCC---EEEEECCCCCEEEEECCCCEEEEec---------------------cCCC
Confidence 555555544 3488999999754 8999999999999999533222211 1333
Q ss_pred CceEEEEeeCCC-EEEEEecCceEEEEECCC----CcEEEeeeccCccceEEEEEee-CCCEEEEeeCCCeEEEEeCcCC
Q 008844 175 TPTAACFNKYGD-LVYVGNSKGEILVIDHKS----NQIRALVPVSGAAVIKNIVFSR-NGQYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 175 ~i~~~~~s~~g~-~l~~g~~dg~i~i~d~~~----~~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd~~~~ 248 (551)
.|.+++|+|++. +|++|+.||.|++||+++ +..+..+ .|...|++++|+| ++.+|++++.|+.|++||+...
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence 899999999998 999999999999999998 6666666 6899999999999 9999999999999999993221
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-------cccccce-----eeeeeeEEcCCCCEEEEeeccCCc
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-------FQDSITK-----MHWKAPCFSGDGEWVIAGSASKGE 316 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~-----~~~~~~~~s~dg~~l~~gs~~~~d 316 (551)
. ++..+.. +...+.. ..+..++|+|+|++ +|+. |
T Consensus 284 ~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~---d 329 (383)
T 3ei3_B 284 S-----------------------------KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND---K 329 (383)
T ss_dssp T-----------------------------SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC---C
T ss_pred c-----------------------------cccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC---C
Confidence 1 1111111 1111110 01114677888877 6666 8
Q ss_pred ceEEEEecC-CceeEEEec--CCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 317 HKIYIWDRA-GYLVKILEG--PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 317 g~I~iwd~~-~~~~~~l~~--h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+.|+|||+. ++++..+.+ |...+..++|+|++++|++++ ||.|+||++++
T Consensus 330 ~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999999 999999987 456778889999999999997 99999999874
No 26
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=320.44 Aligned_cols=312 Identities=11% Similarity=0.086 Sum_probs=251.6
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC----CceeeEeecccccccEEEEEecC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET----RGIAKELRDKECVAAITSVCWSK 77 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~----~~~~~~~~~~~h~~~V~~l~~s~ 77 (551)
.|+|||..++...+.+..+.|...|++++|+|++++||+|+.||.|+||++.+ ...+..+.+| ...|++++|+|
T Consensus 46 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~ 123 (416)
T 2pm9_A 46 SLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH--SSSVKTVKFNA 123 (416)
T ss_dssp CCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS--SSCCCEEEECS
T ss_pred eEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCC--ccceEEEEEcC
Confidence 47899998887555555566889999999999999999999999999999987 3466666654 89999999999
Q ss_pred C-CCEEEEEeCCCCEEEEEcCCCe------EEEEE---E-cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee
Q 008844 78 Y-GHRILVSAADKSLTLWDVLKGE------KITRI---V-LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 78 ~-g~~l~s~s~dg~i~vwd~~~~~------~~~~~---~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 146 (551)
+ +++|++++.|+.|++||+.++. ....+ . ....+..+.|+|++ ..++++++.++.+++||+.++...
T Consensus 124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--AHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC--TTEEEEESSSSCEEEEETTTTEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC--CcEEEEEcCCCCEEEEECCCCCcc
Confidence 8 8999999999999999998876 33222 2 23468899999974 348999999999999999988765
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCc---eEEEEECCCC-cEEEeeeccCccceEE
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKG---EILVIDHKSN-QIRALVPVSGAAVIKN 221 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg---~i~i~d~~~~-~~~~~~~~~~~~~i~~ 221 (551)
........ ...+...+.+++|+|++ .+|++++.++ .|++||++++ ..+..+...|...|++
T Consensus 202 ~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 202 IHLSYTSP--------------NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267 (416)
T ss_dssp EEECCCCC--------------SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE
T ss_pred eEEecccc--------------ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE
Confidence 43221110 01123489999999998 6899999998 9999999987 4444442258899999
Q ss_pred EEEee-CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEE
Q 008844 222 IVFSR-NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCF 300 (551)
Q Consensus 222 l~~s~-~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 300 (551)
++|+| ++++|++++.|+.|++||+. ...++..+..|...+. +++|
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~-----------------------------~~~~~~~~~~~~~~v~-----~~~~ 313 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPE-----------------------------SAEQLSQFPARGNWCF-----KTKF 313 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSS-----------------------------SCCEEEEEECSSSCCC-----CEEE
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCC-----------------------------CCccceeecCCCCceE-----EEEE
Confidence 99999 89999999999999999922 2455677778888887 8999
Q ss_pred cCCC-CEEEEeeccCCcceEEEEecC-CceeEEEe-----------------------------------cCCCceEEEE
Q 008844 301 SGDG-EWVIAGSASKGEHKIYIWDRA-GYLVKILE-----------------------------------GPKEALIDLA 343 (551)
Q Consensus 301 s~dg-~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~-----------------------------------~h~~~v~~l~ 343 (551)
+|++ .+|++++. |+.|+||++. +....... .|..++.+++
T Consensus 314 s~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (416)
T 2pm9_A 314 APEAPDLFACASF---DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAH 390 (416)
T ss_dssp CTTCTTEEEECCS---SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCE
T ss_pred CCCCCCEEEEEec---CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceE
Confidence 9999 89999999 9999999998 43222111 1567788999
Q ss_pred EecCCCeEEEEcCCCcEEEEecCCC
Q 008844 344 WHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 344 ~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
|+|++++|++++.||.|+||++.+.
T Consensus 391 ~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 391 WAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp EETTTEEECBCTTSSCBCCBCCCCC
T ss_pred EeeCCeEEEEeCCCCeEEEEEeccC
Confidence 9999999999999999999999764
No 27
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.1e-37 Score=308.24 Aligned_cols=259 Identities=17% Similarity=0.359 Sum_probs=227.9
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.|+|||..+++....+.. |.+.|++++|+|+|++||+|+.||+|+|||+.+++++..+.+| ...|.+++|+|++++
T Consensus 131 ~i~vwd~~~~~~~~~l~~--h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h--~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 131 TIKVWDYETGDFERTLKG--HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH--DHNVSSVSIMPNGDH 206 (410)
T ss_dssp CEEEEETTTCCCCEEECC--CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCC--SSCEEEEEECSSSSE
T ss_pred eEEEEECCCCcEEEEEec--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC--CCCEEEEEEeCCCCE
Confidence 478999999988777765 8899999999999999999999999999999999998888765 899999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
|++|+.|++|++||+.++.++..+..+.. +..+.++|++. ++++++.|+.+++||+.++.......
T Consensus 207 l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~---~l~s~s~D~~v~vwd~~~~~~~~~~~---------- 273 (410)
T 1vyh_C 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---LIASCSNDQTVRVWVVATKECKAELR---------- 273 (410)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTCCEEEEEC----------
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---EEEEEcCCCeEEEEECCCCceeeEec----------
Confidence 99999999999999999999999988764 67788888754 89999999999999999887654321
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeC--------------------CCEEEEEecCceEEEEECCCCcEEEeeeccCccceE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKY--------------------GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIK 220 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~--------------------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~ 220 (551)
.|...|.+++|+|+ |.+|++|+.||.|++||++++.++..+. .|...|+
T Consensus 274 ----------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~v~ 342 (410)
T 1vyh_C 274 ----------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVR 342 (410)
T ss_dssp ----------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEE
T ss_pred ----------CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-CCCCcEE
Confidence 23337899999986 6789999999999999999999988876 7999999
Q ss_pred EEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEE
Q 008844 221 NIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCF 300 (551)
Q Consensus 221 ~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 300 (551)
+++|+|+|++|++++.|++|++||+ ....++..+..|...|. +++|
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i~vwd~-----------------------------~~~~~~~~~~~h~~~v~-----~l~~ 388 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTLRVWDY-----------------------------KNKRCMKTLNAHEHFVT-----SLDF 388 (410)
T ss_dssp EEEECSSSSCEEEEETTTEEEEECC-----------------------------TTSCCCEEEECCSSCEE-----EEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEC-----------------------------CCCceEEEEcCCCCcEE-----EEEE
Confidence 9999999999999999999999992 22456777888888887 8999
Q ss_pred cCCCCEEEEeeccCCcceEEEEecC
Q 008844 301 SGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 301 s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
+|++.+|++|+. |+.|+||+++
T Consensus 389 ~~~~~~l~sgs~---D~~i~vW~~r 410 (410)
T 1vyh_C 389 HKTAPYVVTGSV---DQTVKVWECR 410 (410)
T ss_dssp CSSSSCEEEEET---TSEEEEEC--
T ss_pred cCCCCEEEEEeC---CCcEEEEeCC
Confidence 999999999999 9999999863
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.4e-37 Score=303.44 Aligned_cols=288 Identities=15% Similarity=0.149 Sum_probs=239.0
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG--IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
|.++|++++|+|+|++||+|+.|+.|+||++.+++ .+..+.+| ...|++++|+|++++|++++.|+.|++||+.++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH--NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC--SSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC--CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 78899999999999999999999999999999887 77777655 899999999999999999999999999999998
Q ss_pred eEEEEEE---cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 100 EKITRIV---LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 100 ~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
+....+. ....+..+.|+|++. ++++++.++.+++|++..+......... ...|...+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~v~i~d~~~~~~~~~~~~~----------------~~~~~~~i 145 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEK---KFAVGSGSRVISICYFEQENDWWVCKHI----------------KKPIRSTV 145 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSS---EEEEEETTSSEEEEEEETTTTEEEEEEE----------------CTTCCSCE
T ss_pred eeeeeEEeecCCCceeEEEECCCCC---EEEEEeCCCEEEEEEecCCCcceeeeee----------------ecccCCCe
Confidence 8665553 334688999999754 8999999999999999887632211111 11233489
Q ss_pred eEEEEeeCCCEEEEEecCceEEEEECC------------------CCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC
Q 008844 177 TAACFNKYGDLVYVGNSKGEILVIDHK------------------SNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR 238 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i~d~~------------------~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg 238 (551)
.+++|+|++++|++|+.+|.|++||++ .++.+..+. .|...|.+++|+|++++|++++.|+
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~ 224 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDS 224 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTT
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999999999953 567777775 7889999999999999999999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
.|++||+ ....++..+..|...+. +++|+|++++|++| . ++.
T Consensus 225 ~i~i~d~-----------------------------~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~-~---d~~ 266 (372)
T 1k8k_C 225 TVCLADA-----------------------------DKKMAVATLASETLPLL-----AVTFITESSLVAAG-H---DCF 266 (372)
T ss_dssp EEEEEEG-----------------------------GGTTEEEEEECSSCCEE-----EEEEEETTEEEEEE-T---TSS
T ss_pred EEEEEEC-----------------------------CCCceeEEEccCCCCeE-----EEEEecCCCEEEEE-e---CCe
Confidence 9999992 22445666777777776 88999999999988 6 899
Q ss_pred EEEEecCC--ce---e------------------------------------EEE-ecCCCceEEEEEe-cCC---CeEE
Q 008844 319 IYIWDRAG--YL---V------------------------------------KIL-EGPKEALIDLAWH-PVH---PIIV 352 (551)
Q Consensus 319 I~iwd~~~--~~---~------------------------------------~~l-~~h~~~v~~l~~s-p~~---~~l~ 352 (551)
|++|++.. .. + ..+ .+|...|++++|+ +++ .+|+
T Consensus 267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~ 346 (372)
T 1k8k_C 267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 346 (372)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence 99999863 11 0 223 4899999999977 555 8999
Q ss_pred EEcCCCcEEEEecCCCC
Q 008844 353 SVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 353 s~s~dg~i~iW~~~~~~ 369 (551)
+++.||.|+||++.+.+
T Consensus 347 s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 347 TTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEETTSEEEEEEHHHHH
T ss_pred EecCCCceEEEEecChh
Confidence 99999999999997643
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.4e-36 Score=325.13 Aligned_cols=284 Identities=17% Similarity=0.252 Sum_probs=234.3
Q ss_pred cccceEEEEEEcCCC-CEEEEEeCCCeEEEEeccCCc-----eeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEE
Q 008844 21 LEHGVMKCIAFNRRG-TLLAAGCSDGSCVIWDFETRG-----IAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLW 94 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg-~~latg~~dg~I~iwd~~~~~-----~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vw 94 (551)
.|.+.|+||+|+|++ ++|++|+.||+|+||++.+.. ....+.+| ...|.+++|+|++++|++|+.|++|+||
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--SHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC--CCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 388999999999874 799999999999999997642 34556554 8999999999999999999999999999
Q ss_pred EcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 95 DVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 95 d~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
|+.++..+..+..|. .+.++.|+|++. .+++++.|+.|++||+.......... ....|.
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~s~D~~i~iwd~~~~~~~~~~~-----------------~~~~h~ 517 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNR---QIVSASRDRTIKLWNTLGECKYTISE-----------------GGEGHR 517 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSS---CEEEEETTSCEEEECTTSCEEEEECS-----------------STTSCS
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCC---EEEEEeCCCEEEEEECCCCcceeecc-----------------CCCCCC
Confidence 999999999988776 578999999865 68999999999999986554332211 112344
Q ss_pred CCceEEEEeeCC--CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccc
Q 008844 174 FTPTAACFNKYG--DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 174 ~~i~~~~~s~~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~ 251 (551)
..|.+++|+|++ .+|++|+.||.|++||++++++...+. .|...|++++|+|++++|++++.||+|+|||+..
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~---- 592 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE---- 592 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT----
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC----
Confidence 479999999987 689999999999999999999888776 8999999999999999999999999999999321
Q ss_pred cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeE
Q 008844 252 GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVK 330 (551)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~ 330 (551)
..++..+.. ...+. +++|+|++.+|++++ ++.|+|||+. +.++.
T Consensus 593 -------------------------~~~~~~~~~-~~~v~-----~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 593 -------------------------GKKLYSLEA-NSVIH-----ALCFSPNRYWLCAAT----EHGIKIWDLESKSIVE 637 (694)
T ss_dssp -------------------------TEEEECCBC-SSCEE-----EEEECSSSSEEEEEE----TTEEEEEETTTTEEEE
T ss_pred -------------------------CceEEEecC-CCcEE-----EEEEcCCCcEEEEEc----CCCEEEEECCCCCChh
Confidence 333333332 23344 899999999998877 4669999999 88777
Q ss_pred EEecCC-------------------CceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 331 ILEGPK-------------------EALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 331 ~l~~h~-------------------~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
.+..+. ..+++++|+|++++|++++.||.|+||++.
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 638 DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred hhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 765432 137899999999999999999999999986
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=311.38 Aligned_cols=299 Identities=11% Similarity=0.148 Sum_probs=243.3
Q ss_pred ccceEEEEEEcCCCC-EEEEE----------eCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCC
Q 008844 22 EHGVMKCIAFNRRGT-LLAAG----------CSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKS 90 (551)
Q Consensus 22 h~~~V~~l~fs~dg~-~latg----------~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~ 90 (551)
+...|.+++|+|+|+ +||+| +.|+.|+||++.++.....+....|...|++++|+|++++|++++.|+.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 456799999999997 99999 8899999999998764333332346899999999999999999999999
Q ss_pred EEEEEcCC----CeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCC
Q 008844 91 LTLWDVLK----GEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRN 165 (551)
Q Consensus 91 i~vwd~~~----~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (551)
|++|++.+ ...+..+..+. .+..+.|+|++ ..++++++.++.+++||+.++........ ...
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----------~~~ 157 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIWDMNKCTESPSNYT-----------PLT 157 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBCBTTTTSSCTTTCC-----------CBC
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEEECCCCcccccccc-----------ccc
Confidence 99999987 34667766554 57899999973 33799999999999999988762110000 000
Q ss_pred CCCCCCCCCCceEEEEeeC-CCEEEEEecCceEEEEECCCCcEEEeeeccC-----ccceEEEEEeeCC-CEEEEeeCCC
Q 008844 166 KYSDGTPPFTPTAACFNKY-GDLVYVGNSKGEILVIDHKSNQIRALVPVSG-----AAVIKNIVFSRNG-QYLLTNSNDR 238 (551)
Q Consensus 166 ~~~~~~~~~~i~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~l~~s~~g-~~l~t~s~Dg 238 (551)
......+...+.+++|+|+ +.+|++++.+|.|++||+++++.+..+...+ ...|.+++|+|++ .+|++++.|+
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 0111234458999999999 6899999999999999999999888775322 7889999999997 6899999998
Q ss_pred ---eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec-ccccccceeeeeeeEEcC-CCCEEEEeecc
Q 008844 239 ---TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR-EFQDSITKMHWKAPCFSG-DGEWVIAGSAS 313 (551)
Q Consensus 239 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~ 313 (551)
.|++||+... ...+..+. .|...+. +++|+| ++++|++++.
T Consensus 238 ~~~~i~~~d~~~~----------------------------~~~~~~~~~~~~~~v~-----~~~~s~~~~~~l~s~~~- 283 (416)
T 2pm9_A 238 NDPSILIWDLRNA----------------------------NTPLQTLNQGHQKGIL-----SLDWCHQDEHLLLSSGR- 283 (416)
T ss_dssp SSCCCCEEETTST----------------------------TSCSBCCCSCCSSCEE-----EEEECSSCSSCEEEEES-
T ss_pred CCceEEEEeCCCC----------------------------CCCcEEeecCccCcee-----EEEeCCCCCCeEEEEeC-
Confidence 9999993221 12344555 6777777 899999 9999999999
Q ss_pred CCcceEEEEecC-CceeEEEecCCCceEEEEEecCC-CeEEEEcCCCcEEEEecCCCC
Q 008844 314 KGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVH-PIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 314 ~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iW~~~~~~ 369 (551)
|+.|++||+. ++++..+.+|...|.+++|+|++ .+|++++.||.|+||++....
T Consensus 284 --dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 284 --DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp --SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred --CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 9999999999 99999999999999999999999 799999999999999998654
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-36 Score=303.75 Aligned_cols=314 Identities=15% Similarity=0.212 Sum_probs=244.9
Q ss_pred ccccCCCCccceeecccccceEEEEEEcCCCC-EEEEEeCCCeEEEEec----cCCc------eeeEeecc--------c
Q 008844 5 IIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGT-LLAAGCSDGSCVIWDF----ETRG------IAKELRDK--------E 65 (551)
Q Consensus 5 lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~-~latg~~dg~I~iwd~----~~~~------~~~~~~~~--------~ 65 (551)
+|+... ....+....|.+.|++++|+|+|+ +||+|+.||.|+||++ .+++ ....+... +
T Consensus 29 ~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (425)
T 1r5m_A 29 SDDLDG--FVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK 106 (425)
T ss_dssp -----C--CCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-----
T ss_pred cccchh--hhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccC
Confidence 455432 334566656779999999999999 9999999999999999 8877 34444320 1
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 66 CVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 66 h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
|...|++++|+|++++|++++.|+.|++|| .++..+..+..+. .+..+.|+|++. ++++++.++.+++|++.++.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT---HIISMDVENVTILWNVISGT 182 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS---EEEEEETTCCEEEEETTTTE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCC---EEEEEecCCeEEEEECCCCc
Confidence 477999999999999999999999999999 6778888887654 588999999754 78999999999999999887
Q ss_pred eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEE
Q 008844 145 TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVF 224 (551)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~ 224 (551)
............... ...........+.+++|++++ .+++++.+|.|++||+.+++.+..+. .|...|.+++|
T Consensus 183 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~ 255 (425)
T 1r5m_A 183 VMQHFELKETGGSSI-----NAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEF 255 (425)
T ss_dssp EEEEECCC--------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEE
T ss_pred EEEEeeccccCccce-----eeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEE
Confidence 654322211110000 000001111238899999985 58899999999999999998877775 78899999999
Q ss_pred eeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC
Q 008844 225 SRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG 304 (551)
Q Consensus 225 s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg 304 (551)
+|++++|++++.|+.|++||+. ....+..+..|...+. +++|+|++
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~~-----------------------------~~~~~~~~~~~~~~i~-----~~~~~~~~ 301 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHGG-----------------------------NGNSQNCFYGHSQSIV-----SASWVGDD 301 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECSS-----------------------------SBSCSEEECCCSSCEE-----EEEEETTT
T ss_pred CCCCCEEEEEcCCCEEEEEECC-----------------------------CCccceEecCCCccEE-----EEEECCCC
Confidence 9999999999999999999922 1344556666777776 88999999
Q ss_pred CEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 305 EWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 305 ~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+|++++. ++.|++||+. ++++..+..|...|.+++|+|++++|++++.||.|+||++.+.+
T Consensus 302 -~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 302 -KVISCSM---DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp -EEEEEET---TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred -EEEEEeC---CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999998 9999999999 99999999999999999999999999999999999999998655
No 32
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.6e-37 Score=311.91 Aligned_cols=294 Identities=13% Similarity=0.165 Sum_probs=220.5
Q ss_pred ccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC-CCCEEEEEeCCCCEEEEEcCCC
Q 008844 22 EHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK-YGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 22 h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
|...|+||+|+| ++++||+|+.||+|+|||+.++.....+...+|...|++|+|+| ++++|++|+.|++|+|||++++
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 667899999999 56799999999999999999887776666667799999999998 6899999999999999999876
Q ss_pred eEEEEEEcCC---CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 100 EKITRIVLQQ---TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 100 ~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
........+. .+.++.|+|++. ++++++.++.|++||+....... ...|...|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~g~~dg~i~~wd~~~~~~~~---------------------~~~h~~~v 253 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASSR---MVVTGDNVGNVILLNMDGKELWN---------------------LRMHKKKV 253 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTTT---EEEEECSSSBEEEEESSSCBCCC---------------------SBCCSSCE
T ss_pred ceeEEeccCCCCccEEEEEECCCCC---EEEEEeCCCcEeeeccCcceeEE---------------------EecccceE
Confidence 5433333222 256788998754 89999999999999987543211 12344589
Q ss_pred eEEEEeeCCC-EEEEEecCceEEEEECCCCcEEEee--eccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccc
Q 008844 177 TAACFNKYGD-LVYVGNSKGEILVIDHKSNQIRALV--PVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 177 ~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
++++|+|++. +|++|+.||.|+|||+++.+....+ ...|...|++++|+|+|++|++++.||.|+|||+..
T Consensus 254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~------ 327 (435)
T 4e54_B 254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ------ 327 (435)
T ss_dssp EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS------
T ss_pred EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC------
Confidence 9999999985 7889999999999999887653322 226889999999999999999999999999999322
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccc-eeeeeeeEEcCCCCEEEEeeccC---------CcceEEEEe
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSIT-KMHWKAPCFSGDGEWVIAGSASK---------GEHKIYIWD 323 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~s~dg~~l~~gs~~~---------~dg~I~iwd 323 (551)
..+...+..|..... ......++|+|++.+++++.... .++.|+|||
T Consensus 328 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd 384 (435)
T 4e54_B 328 -----------------------WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD 384 (435)
T ss_dssp -----------------------SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEEC
T ss_pred -----------------------CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEE
Confidence 111222222211100 00001345666666665554311 146799999
Q ss_pred cC-CceeEEEe-cCCCceEEE-EEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 324 RA-GYLVKILE-GPKEALIDL-AWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 324 ~~-~~~~~~l~-~h~~~v~~l-~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
.. ++++..+. +|...|.++ +|+|++.+|++++ |+.|+||++..++
T Consensus 385 ~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 385 GNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 99 88888765 677888887 6999999999887 8899999998764
No 33
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-37 Score=312.29 Aligned_cols=323 Identities=14% Similarity=0.171 Sum_probs=232.2
Q ss_pred ccccCCCCccceeecccccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccC---Cceee-EeecccccccEEEEEecCCC
Q 008844 5 IIDPLQGDFPEVIEEYLEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFET---RGIAK-ELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 5 lwd~~~~~~~~~l~~~~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~---~~~~~-~~~~~~h~~~V~~l~~s~~g 79 (551)
+|++ +++....+. ..|.+.|++++|+| ++++||+|+.||+|+|||+.+ +.... .+. ..|...|++++|+|++
T Consensus 47 ~w~~-~g~~~~~~~-~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~ 123 (437)
T 3gre_A 47 MGNL-RGKLIATLM-ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT-YDCSSTVTQITMIPNF 123 (437)
T ss_dssp GGGC-CCCEEEEEC-TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE-EECSSCEEEEEECTTS
T ss_pred cccc-cceEEeeec-cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee-ccCCCCEEEEEEeCCC
Confidence 4653 344434441 12679999999999 999999999999999999987 44222 222 1368999999999999
Q ss_pred CEEEEEeCCCCEEEEEcC---CCeEEEEEEcC-------------CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 80 HRILVSAADKSLTLWDVL---KGEKITRIVLQ-------------QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~-------------~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
++|++++.|++|++||+. +++.+..+..+ ..+..+.+... ....++++++.++.+++||+.++
T Consensus 124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEETTTC
T ss_pred CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCC
Confidence 999999999999999994 56555444322 22334442221 22458999999999999999998
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIV 223 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 223 (551)
......... .|...|++++|+|++.+|++|+.||.|++||+++++.+..+...|...|++++
T Consensus 203 ~~~~~~~~~------------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 264 (437)
T 3gre_A 203 ERLQIIENS------------------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVE 264 (437)
T ss_dssp CEEEEEECC------------------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEE
T ss_pred eeeEEEccC------------------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEE
Confidence 765432211 02238999999999999999999999999999999998887667888999996
Q ss_pred Eee----CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeecc-ceeeeeecc--cccccceeeee
Q 008844 224 FSR----NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVG-SKCLALFRE--FQDSITKMHWK 296 (551)
Q Consensus 224 ~s~----~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~v~~~~~~ 296 (551)
|+| ++.+|++++.||.|++||+.... .+..+......+... .+...+ .-....+.+ |...|.
T Consensus 265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~v~----- 333 (437)
T 3gre_A 265 VCQFYGKNSVIVVGGSSKTFLTIWNFVKGH-----CQYAFINSDEQPSME-HFLPIEKGLEELNFCGIRSLNALS----- 333 (437)
T ss_dssp ECTTTCTTEEEEEEESTTEEEEEEETTTTE-----EEEEEESSSSCCCGG-GGSCBCSSGGGCCCCCCCSGGGGC-----
T ss_pred eccccCCCccEEEEEcCCCcEEEEEcCCCc-----EEEEEEcCCCCCccc-eecccccccccceecccccCCceE-----
Confidence 664 67899999999999999943211 000010000000000 000000 000001222 555565
Q ss_pred eeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec-------------------------------------CCCc
Q 008844 297 APCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG-------------------------------------PKEA 338 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~-------------------------------------h~~~ 338 (551)
+++|+ ++++|++|+. |+.|++||+. ++.+..+.+ |...
T Consensus 334 ~l~~~-~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 409 (437)
T 3gre_A 334 TISVS-NDKILLTDEA---TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDI 409 (437)
T ss_dssp CEEEE-TTEEEEEEGG---GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCC
T ss_pred EEEEC-CceEEEecCC---CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccc
Confidence 88999 7899999999 9999999999 777777765 7889
Q ss_pred eEEEEEecC--CCeEEEEcCCCcEEEEe
Q 008844 339 LIDLAWHPV--HPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 339 v~~l~~sp~--~~~l~s~s~dg~i~iW~ 364 (551)
|++++|+++ +.+|++++.||.|+||+
T Consensus 410 I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 410 INSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 999999998 77999999999999995
No 34
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=296.18 Aligned_cols=293 Identities=10% Similarity=0.104 Sum_probs=233.3
Q ss_pred ccceEEEEEEcCCCC-EEEEEeC---CCeEEEEeccCCceeeEeecccccccEEEEEecCC---CCEEEEEeCCCCEEEE
Q 008844 22 EHGVMKCIAFNRRGT-LLAAGCS---DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY---GHRILVSAADKSLTLW 94 (551)
Q Consensus 22 h~~~V~~l~fs~dg~-~latg~~---dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~---g~~l~s~s~dg~i~vw 94 (551)
|...|++++|+|++. +|++|+. ||.|+||++.+++....... +|...|.+++|+|+ +.+|++++.|+.|++|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 788999999999996 4556665 89999999998887655442 45899999999998 6999999999999999
Q ss_pred EcCCCe-EEEEEEcCC-CeeEEEEecC---CCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 95 DVLKGE-KITRIVLQQ-TPLQARLHPG---SSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 95 d~~~~~-~~~~~~~~~-~~~~~~~~p~---~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
|+.++. .+..+..+. .+..+.|.+. .....++++++.++.+++||+..+.......... .
T Consensus 96 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------------~ 160 (357)
T 3i2n_A 96 NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV---------------Q 160 (357)
T ss_dssp CTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC---------------T
T ss_pred eCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc---------------C
Confidence 999887 777777665 4667766541 2234489999999999999999876322211110 0
Q ss_pred CCCCCCceEEE----EeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee---CCCEEEEeeCCCeEEE
Q 008844 170 GTPPFTPTAAC----FNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR---NGQYLLTNSNDRTIRI 242 (551)
Q Consensus 170 ~~~~~~i~~~~----~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~---~g~~l~t~s~Dg~i~i 242 (551)
......+.+++ |++++.+|++|+.+|.|++||+++++..... .|...|.+++|+| ++.+|++++.||.|++
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 11122678888 7889999999999999999999999886665 7889999999999 9999999999999999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee-----eecccccccceeeeeeeEEcCCCC-EEEEeeccCCc
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA-----LFREFQDSITKMHWKAPCFSGDGE-WVIAGSASKGE 316 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~s~dg~-~l~~gs~~~~d 316 (551)
||+.. ..... .+..|...+. +++|+|+++ +|++++. |
T Consensus 239 ~d~~~-----------------------------~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~~~~---d 281 (357)
T 3i2n_A 239 FDMRT-----------------------------QHPTKGFASVSEKAHKSTVW-----QVRHLPQNRELFLTAGG---A 281 (357)
T ss_dssp EEEEE-----------------------------EETTTEEEEEEEECCSSCEE-----EEEEETTEEEEEEEEET---T
T ss_pred EeCcC-----------------------------CCcccceeeeccCCCcCCEE-----EEEECCCCCcEEEEEeC---C
Confidence 99221 11121 2336777776 899999999 8999999 9
Q ss_pred ceEEEEecC-C-------------------ceeEEEecCCCceEEEEEecCCCeEE-EEcCCCcEEEEecCCCC
Q 008844 317 HKIYIWDRA-G-------------------YLVKILEGPKEALIDLAWHPVHPIIV-SVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 317 g~I~iwd~~-~-------------------~~~~~l~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iW~~~~~~ 369 (551)
|.|+||++. + .++..+.+|...|++++|+|++++|+ +++.||.|+||++.+.+
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999999987 2 36778889999999999999999998 89999999999998653
No 35
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=293.03 Aligned_cols=260 Identities=14% Similarity=0.205 Sum_probs=227.1
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.|+||+...+..........|...|.+++|++++.+|++|+.|++|+|||+.+++.+..+..+ ...+.+++|+|++++
T Consensus 59 ~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~--~~~~~~~~~spdg~~ 136 (321)
T 3ow8_A 59 LVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG--PVDAWTLAFSPDSQY 136 (321)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--TTCCCCEEECTTSSE
T ss_pred CEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC--CccEEEEEECCCCCE
Confidence 378999876654333333448899999999999999999999999999999999999888765 788999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
|++++.|+.|++|++.++.....+..+. .+..+.|+|++. ++++++.++.+++||+.+++.....
T Consensus 137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~---~lasg~~dg~i~iwd~~~~~~~~~~----------- 202 (321)
T 3ow8_A 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK---YLASGAIDGIINIFDIATGKLLHTL----------- 202 (321)
T ss_dssp EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE-----------
T ss_pred EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC---EEEEEcCCCeEEEEECCCCcEEEEE-----------
Confidence 9999999999999999999888887765 478899999864 8999999999999999988754332
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
..|...|.+++|+|++++|++|+.||.|++||++++.....+. .|...|.+++|+|++++|++++.|++|
T Consensus 203 ---------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 203 ---------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSV 272 (321)
T ss_dssp ---------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ---------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 1233489999999999999999999999999999999888776 789999999999999999999999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
+|||+ ....++..+..|...|. +++|+|+|++|++++. |+.|+
T Consensus 273 ~iwd~-----------------------------~~~~~~~~~~~h~~~v~-----~v~~s~~g~~l~s~~~---d~~i~ 315 (321)
T 3ow8_A 273 KVWDV-----------------------------GTRTCVHTFFDHQDQVW-----GVKYNGNGSKIVSVGD---DQEIH 315 (321)
T ss_dssp EEEET-----------------------------TTTEEEEEECCCSSCEE-----EEEECTTSSEEEEEET---TCCEE
T ss_pred EEEeC-----------------------------CCCEEEEEEcCCCCcEE-----EEEECCCCCEEEEEeC---CCeEE
Confidence 99992 23567788888988887 8999999999999999 99999
Q ss_pred EEec
Q 008844 321 IWDR 324 (551)
Q Consensus 321 iwd~ 324 (551)
|||.
T Consensus 316 vwd~ 319 (321)
T 3ow8_A 316 IYDC 319 (321)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9996
No 36
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-35 Score=300.69 Aligned_cols=280 Identities=16% Similarity=0.245 Sum_probs=230.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
+++|+||++ ++||+|. |++|+|||+.++++...+..++|...|++|+|+|+|++|++|+.|++|+|||+.+++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 567999975 5888876 89999999999999999988888999999999999999999999999999999999999999
Q ss_pred EcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC
Q 008844 106 VLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184 (551)
Q Consensus 106 ~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 184 (551)
..|.. +.++.+.+ .++++++.++.+.+|+..........+. .|...+..+.|+++
T Consensus 186 ~~h~~~v~~~s~~~-----~~l~sgs~d~~i~~~d~~~~~~~~~~~~-------------------~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 186 TSHSARVGSLSWNS-----YILSSGSRSGHIHHHDVRVAEHHVATLS-------------------GHSQEVCGLRWAPD 241 (420)
T ss_dssp CCCSSCEEEEEEET-----TEEEEEETTSEEEEEETTSSSCEEEEEE-------------------CCSSCEEEEEECTT
T ss_pred eCCCCceEEEeeCC-----CEEEEEeCCCceeEeeecccceeeEEec-------------------ccccceeeeeecCC
Confidence 87765 44555543 3899999999999999987665433222 23338899999999
Q ss_pred CCEEEEEecCceEEEEECCCCcE----EEeeeccCccceEEEEEeeCCC-EEEE--eeCCCeEEEEeCcCCccccchhhh
Q 008844 185 GDLVYVGNSKGEILVIDHKSNQI----RALVPVSGAAVIKNIVFSRNGQ-YLLT--NSNDRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 185 g~~l~~g~~dg~i~i~d~~~~~~----~~~~~~~~~~~i~~l~~s~~g~-~l~t--~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
+.++++++.||.|++|+..+++. +... ..|...|.+++|+|.+. +|++ |+.|++|++||+.
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~----------- 309 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----------- 309 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT-----------
T ss_pred CCeeeeeeccccceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC-----------
Confidence 99999999999999999987753 2222 27889999999999765 4444 4579999999932
Q ss_pred hhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC
Q 008844 258 DIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK 336 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~ 336 (551)
.+.++..+..+. .+. ++.|+|+++.|++++... ++.|+|||+. ++++..+.+|.
T Consensus 310 ------------------t~~~~~~~~~~~-~v~-----~~~~~~~~~~lv~~sg~~-d~~I~iwd~~~~~~v~~l~gH~ 364 (420)
T 4gga_A 310 ------------------SGACLSAVDAHS-QVC-----SILWSPHYKELISGHGFA-QNQLVIWKYPTMAKVAELKGHT 364 (420)
T ss_dssp ------------------TTEEEEEEECSS-CEE-----EEEEETTTTEEEEEECTT-TCCEEEEETTTCCEEEEECCCS
T ss_pred ------------------ccccceeecccc-cee-----eeeecCCCCeEEEEEecC-CCEEEEEECCCCcEEEEEcCCC
Confidence 244454444433 333 789999999998876322 8999999999 99999999999
Q ss_pred CceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 337 EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 337 ~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
+.|++|+|+|++.+|+||+.||+|+||++...
T Consensus 365 ~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 365 SRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999999999999999999999998653
No 37
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-35 Score=285.55 Aligned_cols=255 Identities=15% Similarity=0.193 Sum_probs=213.3
Q ss_pred ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCC
Q 008844 56 GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSA 134 (551)
Q Consensus 56 ~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~ 134 (551)
...+++.+| ...|++++|+|++++|++++.|++|++||+.++..+..+..+. .+..+.|+|++. ++++++.++.
T Consensus 4 ~~~~~~~~h--~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~s~d~~ 78 (304)
T 2ynn_A 4 DIKKTFSNR--SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN---WIIVGSDDFR 78 (304)
T ss_dssp CCEEEEEEE--CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT---EEEEEETTSE
T ss_pred eeEEeecCC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC---EEEEECCCCE
Confidence 345667665 8999999999999999999999999999999999999998775 477889999754 8999999999
Q ss_pred cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc
Q 008844 135 PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS 214 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 214 (551)
+++||+.++....... .|...|.+++|+|++.+|++|+.||+|++||++++.........
T Consensus 79 i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 79 IRVFNYNTGEKVVDFE--------------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EEEEETTTCCEEEEEE--------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred EEEEECCCCcEEEEEe--------------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999987654321 23348999999999999999999999999999988554333338
Q ss_pred CccceEEEEEee-CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee
Q 008844 215 GAAVIKNIVFSR-NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293 (551)
Q Consensus 215 ~~~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 293 (551)
|...|.+++|+| ++.+|++++.|++|++||+... .........+...+.
T Consensus 139 h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~----------------------------~~~~~~~~~~~~~v~-- 188 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS----------------------------TPNFTLTTGQERGVN-- 188 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS----------------------------SCSEEEECCCTTCEE--
T ss_pred cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC----------------------------CccceeccCCcCcEE--
Confidence 999999999999 6789999999999999993211 111122233444454
Q ss_pred eeeeeEEcC--CCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 294 HWKAPCFSG--DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 294 ~~~~~~~s~--dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
.++|+| ++.+|++|+. |+.|+|||+. ++++..+.+|...|.+++|+|++++|++++.||+|+||++.+.+.
T Consensus 189 ---~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 189 ---YVDYYPLPDKPYMITASD---DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp ---EEEECCSTTCCEEEEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred ---EEEEEEcCCCCEEEEEcC---CCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 667765 7889999999 9999999999 999999999999999999999999999999999999999988664
Q ss_pred c
Q 008844 371 W 371 (551)
Q Consensus 371 ~ 371 (551)
.
T Consensus 263 ~ 263 (304)
T 2ynn_A 263 E 263 (304)
T ss_dssp E
T ss_pred e
Confidence 3
No 38
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-36 Score=300.25 Aligned_cols=302 Identities=14% Similarity=0.170 Sum_probs=239.9
Q ss_pred cccceEEEEEEcCC----CCEEEEEeCCCeEEEEeccCCceeeEeeccc---ccccEEEEEecCC----CCEEEEEeCCC
Q 008844 21 LEHGVMKCIAFNRR----GTLLAAGCSDGSCVIWDFETRGIAKELRDKE---CVAAITSVCWSKY----GHRILVSAADK 89 (551)
Q Consensus 21 ~h~~~V~~l~fs~d----g~~latg~~dg~I~iwd~~~~~~~~~~~~~~---h~~~V~~l~~s~~----g~~l~s~s~dg 89 (551)
.|.+.|++++|+|+ ..++++++.++.|+||++.+++.+..+..+. |...|++++|+|+ +.+|++++.|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 37899999999984 4566666677899999999888777776542 5688999999998 67999999999
Q ss_pred CEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCC
Q 008844 90 SLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
.|++||+.+++.+..+..+. .+..+.|+|.. ..++++++.++.|++||+.++........
T Consensus 96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------- 156 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRD--PNLLLSVSKDHALRLWNIQTDTLVAIFGG----------------- 156 (366)
T ss_dssp EEEEECTTTCCEEEEEESCCSCEEEEEECSSC--TTEEEEEETTSCEEEEETTTTEEEEEECS-----------------
T ss_pred EEEEEEchhceEeeeecCCCCcEEEEEECCCC--CCEEEEEeCCCeEEEEEeecCeEEEEecc-----------------
Confidence 99999999999999998654 68899999932 34899999999999999998876543211
Q ss_pred CCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee---------------------------ccCccceEE
Q 008844 169 DGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP---------------------------VSGAAVIKN 221 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~---------------------------~~~~~~i~~ 221 (551)
...+...|.+++|+|++++|++++.||.|++||+++++....+. ..|...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 11233489999999999999999999999999999876543221 128899999
Q ss_pred EEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 222 IVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 222 l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
++|+ +.+|++++.|+.|++||+.... .....+.. .......+..+..|...+. +++|+
T Consensus 237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~-----~~~~s 294 (366)
T 3k26_A 237 VRWL--GDLILSKSCENAIVCWKPGKME-DDIDKIKP--------------SESNVTILGRFDYSQCDIW-----YMRFS 294 (366)
T ss_dssp EEEE--TTEEEEECSSSEEEEEEESSTT-CCGGGCCT--------------TCCCEEEEEEEECSSCCSS-----CCCCE
T ss_pred EEEc--CCEEEEEecCCEEEEEeCCCcc-cccccccc--------------CCcchheeccccccCCcEE-----EEEEc
Confidence 9998 7799999999999999933221 00000000 0011234566677777777 88999
Q ss_pred CC--CCEEEEeeccCCcceEEEEecC-Cc----eeEEEecC--CCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 302 GD--GEWVIAGSASKGEHKIYIWDRA-GY----LVKILEGP--KEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 302 ~d--g~~l~~gs~~~~dg~I~iwd~~-~~----~~~~l~~h--~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
|+ +++|++|+. +|.|+|||+. ++ .+..+.+| ...|++++|+|++++|++++.||.|+||++.
T Consensus 295 ~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 295 MDFWQKMLALGNQ---VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECTTSSEEEEECT---TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCcEEEEEec---CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99 999999999 9999999999 54 44578887 7899999999999999999999999999985
No 39
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=292.28 Aligned_cols=244 Identities=14% Similarity=0.230 Sum_probs=202.6
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEee--cccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELR--DKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~--~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
+...|.+++|+|++ .|++|+.||+|+|||+.+++.+..+. .++|...|++|+|+|+|++|++|+.|++|++||+.++
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 56789999999985 67899999999999999887655433 3456999999999999999999999999999999999
Q ss_pred eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 100 EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 100 ~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
+++..+..|. .+..+.|+|++. .++++++.|+.|++||+++++....... ..+...+++
T Consensus 160 ~~~~~~~~h~~~V~~~~~~~~~~--~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------~~~~~~~~~ 219 (344)
T 4gqb_B 160 VVLSSYRAHAAQVTCVAASPHKD--SVFLSCSEDNRILLWDTRCPKPASQIGC------------------SAPGYLPTS 219 (344)
T ss_dssp EEEEEECCCSSCEEEEEECSSCT--TEEEEEETTSCEEEEETTSSSCEEECC----------------------CCCEEE
T ss_pred cEEEEEcCcCCceEEEEecCCCC--Cceeeeccccccccccccccceeeeeec------------------ceeecccee
Confidence 9999998775 578899999763 4789999999999999998875443211 112236889
Q ss_pred EEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhh
Q 008844 179 ACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEAL 256 (551)
Q Consensus 179 ~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (551)
++|+|++ ++|++|+.||.|+|||+++++++..+. .|...|++++|+|++ ++|++++.|++|+|||+..
T Consensus 220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--------- 289 (344)
T 4gqb_B 220 LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--------- 289 (344)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC---------
T ss_pred eeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC---------
Confidence 9999965 788999999999999999999888876 899999999999998 5799999999999999321
Q ss_pred hhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCE-EEEeeccCCcceEEEEecC
Q 008844 257 VDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEW-VIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~-l~~gs~~~~dg~I~iwd~~ 325 (551)
.. +..+.+|...|. +++|+|++++ |++++. |+.|++|++.
T Consensus 290 --------------------~~-~~~~~~H~~~V~-----~v~~sp~~~~llas~s~---D~~v~~w~v~ 330 (344)
T 4gqb_B 290 --------------------SE-LFRSQAHRDFVR-----DATWSPLNHSLLTTVGW---DHQVVHHVVP 330 (344)
T ss_dssp --------------------CE-EEEECCCSSCEE-----EEEECSSSTTEEEEEET---TSCEEEEECC
T ss_pred --------------------Cc-EEEEcCCCCCEE-----EEEEeCCCCeEEEEEcC---CCeEEEEECC
Confidence 22 345678888887 8999999874 668888 9999999997
No 40
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=286.30 Aligned_cols=282 Identities=15% Similarity=0.202 Sum_probs=228.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
+++|+||+++ +||+|. |++|+|||+.++++++.+..++|...|++++|+|++++|++|+.|++|++|++.+++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4789999886 788775 89999999999999999998888999999999999999999999999999999999999999
Q ss_pred EcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC
Q 008844 106 VLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG 185 (551)
Q Consensus 106 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 185 (551)
..+..... .+.+. ..++++++.++.+.+|+............ .|...+.++.+++++
T Consensus 106 ~~h~~~~~-~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 106 TSHSARVG-SLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLS-------------------GHSQEVCGLRWAPDG 162 (318)
T ss_dssp ECCSSCEE-EEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEE-------------------CCSSCEEEEEECTTS
T ss_pred cCccceEE-EeecC---CCEEEEEecCCceEeeecCCCceeEEEEc-------------------CccCceEEEEEcCCC
Confidence 88765332 23333 23789999999999999887765433222 223378999999999
Q ss_pred CEEEEEecCceEEEEECCCCcEEE---eeeccCccceEEEEEeeCCCEE---EEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 186 DLVYVGNSKGEILVIDHKSNQIRA---LVPVSGAAVIKNIVFSRNGQYL---LTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 186 ~~l~~g~~dg~i~i~d~~~~~~~~---~~~~~~~~~i~~l~~s~~g~~l---~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
++|++++.||.|++||+.+++... .....+...|.+++++|.+..+ ++++.+++|++|+...
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~------------ 230 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------------ 230 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT------------
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc------------
Confidence 999999999999999999876421 1222677899999999976643 4667899999999221
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCc
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEA 338 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~ 338 (551)
.. ......+...+. .++|+|++.++++++... |+.|+|||+. ++++..+.+|.+.
T Consensus 231 -----------------~~-~~~~~~~~~~v~-----~~~~~~~~~~~~~~sg~~-d~~i~iwd~~~~~~~~~l~gH~~~ 286 (318)
T 4ggc_A 231 -----------------GA-CLSAVDAHSQVC-----SILWSPHYKELISGHGFA-QNQLVIWKYPTMAKVAELKGHTSR 286 (318)
T ss_dssp -----------------CC-EEEEEECSSCEE-----EEEEETTTTEEEEEECTT-TCCEEEEETTTCCEEEEECCCSSC
T ss_pred -----------------cc-ccccccceeeee-----eeeecccccceEEEEEcC-CCEEEEEECCCCcEEEEEcCCCCC
Confidence 11 112223334444 789999999988776322 8999999999 9999999999999
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
|++|+|+|++++|||+|.||+|+||++...
T Consensus 287 V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 287 VLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999999999999999999998653
No 41
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=284.71 Aligned_cols=289 Identities=12% Similarity=0.215 Sum_probs=236.1
Q ss_pred ccCCC-CccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE
Q 008844 7 DPLQG-DFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS 85 (551)
Q Consensus 7 d~~~~-~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~ 85 (551)
|+.++ +....+.. |.+.|++++| +++.+|++|+.||.|++||+.++.....+..| ...|.+++|+|++++|+++
T Consensus 3 d~~~~~~~~~~l~~--h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 3 DPFTGYQLSATLKG--HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG--QGFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp --CCCCEEEEEECC--CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEEC--SSCEEEEEEETTTTEEEEE
T ss_pred CccccHHHHHHhhC--CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecC--CccEEEEEECCCCCEEEEe
Confidence 45544 33334433 8899999999 99999999999999999999999888888766 8999999999999999999
Q ss_pred eCCCCEEEEEcCCC---eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC
Q 008844 86 AADKSLTLWDVLKG---EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 86 s~dg~i~vwd~~~~---~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 161 (551)
+.|+.|++|++... ..+..+..+. .+..+.|. ..++++++.++.+++|| .+......
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d--~~~~~~~~------------ 138 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-----DGVVISGSWDKTAKVWK--EGSLVYNL------------ 138 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEE--TTEEEEEE------------
T ss_pred cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-----CCEEEEEeCCCCEEEEc--CCcEEEec------------
Confidence 99999999998654 4555665554 46677773 23899999999999999 22222111
Q ss_pred CCCCCCCCCCCCCCceEEEEee-CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 162 SSRNKYSDGTPPFTPTAACFNK-YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
..+...+.+++|.+ ++.++++++.+|.|++|| ..+....+...|...|.+++|+|++. |++++.|+.|
T Consensus 139 --------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 207 (313)
T 3odt_A 139 --------QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLI 207 (313)
T ss_dssp --------ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEE
T ss_pred --------ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeE
Confidence 11223889999998 899999999999999999 45556666545899999999999998 9999999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
++||+. ....+..+..|...+. +++|+|++ .|++++. ++.|+
T Consensus 208 ~i~d~~-----------------------------~~~~~~~~~~~~~~i~-----~~~~~~~~-~l~~~~~---dg~v~ 249 (313)
T 3odt_A 208 KLVDMH-----------------------------TGDVLRTYEGHESFVY-----CIKLLPNG-DIVSCGE---DRTVR 249 (313)
T ss_dssp EEEETT-----------------------------TCCEEEEEECCSSCEE-----EEEECTTS-CEEEEET---TSEEE
T ss_pred EEEECC-----------------------------chhhhhhhhcCCceEE-----EEEEecCC-CEEEEec---CCEEE
Confidence 999932 2455667777888877 89999999 5888888 99999
Q ss_pred EEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 321 IWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 321 iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+||+. ++++..+..|...|.+++|+|++. |++++.||.|++|++.+.+
T Consensus 250 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 250 IWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred EEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 99999 999999999999999999999998 5668889999999998754
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.1e-36 Score=288.00 Aligned_cols=251 Identities=15% Similarity=0.264 Sum_probs=202.7
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC--CceeeEeecccccccEEEEEecCC--CCEEEEEeCCCCEEEEEc
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET--RGIAKELRDKECVAAITSVCWSKY--GHRILVSAADKSLTLWDV 96 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~--~~~~~~~~~~~h~~~V~~l~~s~~--g~~l~s~s~dg~i~vwd~ 96 (551)
.|.+.|++++|+|+|++||+|+.|++|+||++.+ .+.+.++.+| ..+|++++|+++ +++|++|+.|++|+|||+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH--~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC--SSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc--cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 4889999999999999999999999999999974 3567777665 999999999864 899999999999999999
Q ss_pred CCCeE--EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEK--ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 97 ~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
.++.. +..+.. |..
T Consensus 85 ~~~~~~~~~~~~~----------------------------------------------------------------h~~ 100 (297)
T 2pm7_B 85 ENGRWSQIAVHAV----------------------------------------------------------------HSA 100 (297)
T ss_dssp SSSCBCCCEEECC----------------------------------------------------------------CSS
T ss_pred CCCceEEEEEeec----------------------------------------------------------------CCC
Confidence 87631 111111 122
Q ss_pred CceEEEEeeC--CCEEEEEecCceEEEEECCCCcE--EEeeeccCccceEEEEEeeC-------------CCEEEEeeCC
Q 008844 175 TPTAACFNKY--GDLVYVGNSKGEILVIDHKSNQI--RALVPVSGAAVIKNIVFSRN-------------GQYLLTNSND 237 (551)
Q Consensus 175 ~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~s~~-------------g~~l~t~s~D 237 (551)
.|.+++|+|+ |.+|++|+.||.|++||++++.. ...+. .|...|.+++|+|+ +++|++++.|
T Consensus 101 ~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D 179 (297)
T 2pm7_B 101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC------------CCEEEEEETT
T ss_pred ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCcccccccCCCCCCcceEEEEcCC
Confidence 7899999997 89999999999999999987642 22333 78999999999997 5799999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC---CEEEEeeccC
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG---EWVIAGSASK 314 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg---~~l~~gs~~~ 314 (551)
++|+|||+.... ........+.+|...|. +++|+|++ .+|++++.
T Consensus 180 ~~v~lwd~~~~~-------------------------~~~~~~~~l~~H~~~V~-----~v~~sp~~~~~~~las~s~-- 227 (297)
T 2pm7_B 180 NLVKIWKYNSDA-------------------------QTYVLESTLEGHSDWVR-----DVAWSPTVLLRSYMASVSQ-- 227 (297)
T ss_dssp SCEEEEEEETTT-------------------------TEEEEEEEECCCSSCEE-----EEEECCCCSSSEEEEEEET--
T ss_pred CcEEEEEEcCCC-------------------------ceEEEEEEecCCCCceE-----EEEECCCCCCceEEEEEEC--
Confidence 999999932110 00113456778888887 89999985 89999999
Q ss_pred CcceEEEEecC-Cc---eeEEE--ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 315 GEHKIYIWDRA-GY---LVKIL--EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 315 ~dg~I~iwd~~-~~---~~~~l--~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
|+.|+||++. +. ....+ ..|...|.+++|+|++++||+++.||.|+||+......|
T Consensus 228 -D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w 289 (297)
T 2pm7_B 228 -DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (297)
T ss_dssp -TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred -CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcE
Confidence 9999999998 32 22333 467889999999999999999999999999998754444
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-35 Score=297.94 Aligned_cols=321 Identities=13% Similarity=0.158 Sum_probs=249.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.+.+||..++.....+.. +..+.+..|++++++||+|+.||.|+|||+.++.....+.+| ...|++++|+|++++
T Consensus 79 ~v~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~ 153 (420)
T 3vl1_A 79 HDFLFNTIIRDGSKMLKR---ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH--VSEITKLKFFPSGEA 153 (420)
T ss_dssp EEEEEECCSEETTTTSCS---CCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS--SSCEEEEEECTTSSE
T ss_pred cEEEEEecccceeeEEec---CCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc--cCccEEEEECCCCCE
Confidence 367899887766555443 355566688999999999999999999999998887777655 999999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
|++++.|++|++||+.+++.+..+..+. .+..+.|+|++. ++++++.++.+++||+.++.................
T Consensus 154 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR---NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230 (420)
T ss_dssp EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT---EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC---EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence 9999999999999999999988888665 578999999754 789999999999999998876544322111000000
Q ss_pred ---C-CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCC-EEEEee
Q 008844 161 ---P-SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQ-YLLTNS 235 (551)
Q Consensus 161 ---~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~t~s 235 (551)
. ..........+...+.+++|+|++++|++|+.+|.|++||+++++....+...|...|.+++|+|++. +|++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence 0 00000001112336777888999999999999999999999999988877667889999999999998 999999
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceeeeeeeEEcCCCCEEEEeeccC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMHWKAPCFSGDGEWVIAGSASK 314 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~s~dg~~l~~gs~~~ 314 (551)
.||.|++||+... ...+..+.. +...+. .+ +++++++|++++.
T Consensus 311 ~dg~i~vwd~~~~----------------------------~~~~~~~~~~~~~~v~-----~~-~~~~~~~l~s~~~-- 354 (420)
T 3vl1_A 311 ENGMLAQWDLRSP----------------------------ECPVGEFLINEGTPIN-----NV-YFAAGALFVSSGF-- 354 (420)
T ss_dssp TTSEEEEEETTCT----------------------------TSCSEEEEESTTSCEE-----EE-EEETTEEEEEETT--
T ss_pred CCCeEEEEEcCCC----------------------------cCchhhhhccCCCCce-----EE-EeCCCCEEEEecC--
Confidence 9999999993221 122344444 444443 44 5568899999999
Q ss_pred CcceEEEEecC-C---------ceeEEEecCCCceEEEEEecCCC---eEEEEcCCCcEEEEecCC
Q 008844 315 GEHKIYIWDRA-G---------YLVKILEGPKEALIDLAWHPVHP---IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 315 ~dg~I~iwd~~-~---------~~~~~l~~h~~~v~~l~~sp~~~---~l~s~s~dg~i~iW~~~~ 367 (551)
|+.|+||++. . .....+.+|...|.+++|+|++. .|++++.+|.+.+|+++.
T Consensus 355 -d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 355 -DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp -TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred -CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9999999987 2 22345667889999999999999 777788899999999864
No 44
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.9e-35 Score=320.42 Aligned_cols=301 Identities=15% Similarity=0.182 Sum_probs=262.3
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
|.+.|+|++|+|+|++||+|+.+|.|+|||+.++..+..+.+| ..+|++++|+|++++|++++.|+.|++||+.+++.
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT--ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecC--CCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 8899999999999999999999999999999999999999866 89999999999999999999999999999999999
Q ss_pred EEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 102 ITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 102 ~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
+..+..+. .+..+.|+|++. .+++++.++.+++|++.++........ .|...+.+++
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~-------------------~~~~~v~~~~ 147 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQTFE-------------------GHEHFVMCVA 147 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSS---EEEEEETTSEEEEEEGGGTSEEEEEEE-------------------CCSSCEEEEE
T ss_pred EEEEecCCCCEEEEEEeCCCC---EEEEEcCCCEEEEEECCCCceEEEEEc-------------------CCCCcEEEEE
Confidence 99998665 588999999865 788999999999999988743322211 1233899999
Q ss_pred Eee-CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee--CCCEEEEeeCCCeEEEEeCcCCccccchhhh
Q 008844 181 FNK-YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR--NGQYLLTNSNDRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 181 ~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~--~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
|+| ++.+|++++.+|.|++||+.++.....+...+...+.+++|+| ++.+|++++.||.|++||+
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~------------ 215 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY------------ 215 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET------------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC------------
Confidence 999 8899999999999999999988887766645668999999999 9999999999999999992
Q ss_pred hhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC
Q 008844 258 DIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK 336 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~ 336 (551)
....++..+..|...+. +++|+|+|++|++++. +|.|++||+. +..+..+..|.
T Consensus 216 -----------------~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 216 -----------------QTKSCVATLEGHMSNVS-----FAVFHPTLPIIISGSE---DGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp -----------------TTTEEEEEEECCSSCEE-----EEEECSSSSEEEEEET---TSCEEEEETTTCSEEEEECCSS
T ss_pred -----------------CCCcEEEEEcCCCCCEE-----EEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEeecCC
Confidence 22455667777877777 8899999999999999 9999999999 99999999999
Q ss_pred CceEEEEEecCCCe-EEEEcCCCcEEEEecCCCCcceeecCCcceece
Q 008844 337 EALIDLAWHPVHPI-IVSVSLTGWVYIWAKDYTENWSAFAPDFKELEE 383 (551)
Q Consensus 337 ~~v~~l~~sp~~~~-l~s~s~dg~i~iW~~~~~~~~~~~spd~~~l~~ 383 (551)
..+.+++|+|++.. +++++.++.+.+|++........++|++..+..
T Consensus 271 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 318 (814)
T 3mkq_A 271 ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318 (814)
T ss_dssp SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEE
T ss_pred CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEE
Confidence 99999999999873 344555788999999988888899999887763
No 45
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.6e-36 Score=289.82 Aligned_cols=252 Identities=16% Similarity=0.282 Sum_probs=202.1
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--eeeEeecccccccEEEEEecC--CCCEEEEEeCCCCEEEEEc
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG--IAKELRDKECVAAITSVCWSK--YGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~vwd~ 96 (551)
.|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+| ...|.+++|++ ++++|++|+.|++|++||+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH--~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH--EGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC--SSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC--CccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 388999999999999999999999999999998775 35566655 99999999986 4899999999999999999
Q ss_pred CCCe--EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGE--KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
.++. .+..+..| ..
T Consensus 89 ~~~~~~~~~~~~~h----------------------------------------------------------------~~ 104 (316)
T 3bg1_A 89 ENGTWEKSHEHAGH----------------------------------------------------------------DS 104 (316)
T ss_dssp SSSCCCEEEEECCC----------------------------------------------------------------SS
T ss_pred CCCcceEEEEccCC----------------------------------------------------------------CC
Confidence 8763 22222222 12
Q ss_pred CceEEEEeeC--CCEEEEEecCceEEEEECCCCcEE--EeeeccCccceEEEEEeeC-----------------CCEEEE
Q 008844 175 TPTAACFNKY--GDLVYVGNSKGEILVIDHKSNQIR--ALVPVSGAAVIKNIVFSRN-----------------GQYLLT 233 (551)
Q Consensus 175 ~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~~~--~~~~~~~~~~i~~l~~s~~-----------------g~~l~t 233 (551)
.|.+++|+|+ +.+|++|+.||.|++||++.+... ......|...|.+++|+|+ +++|++
T Consensus 105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 7889999998 789999999999999999876432 2222378889999999997 478999
Q ss_pred eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC----CEEEE
Q 008844 234 NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG----EWVIA 309 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg----~~l~~ 309 (551)
++.|++|++||+.... ...++..+.+|...|. +++|+|++ .+|++
T Consensus 185 gs~D~~v~lWd~~~~~--------------------------~~~~~~~l~~h~~~V~-----~v~~sp~~~~~~~~las 233 (316)
T 3bg1_A 185 GGCDNLIKLWKEEEDG--------------------------QWKEEQKLEAHSDWVR-----DVAWAPSIGLPTSTIAS 233 (316)
T ss_dssp CBTTSBCCEEEECTTS--------------------------CEEEEECCBCCSSCEE-----EEECCCCSSCSCCEEEE
T ss_pred ecCCCeEEEEEeCCCC--------------------------ccceeeecccCCCceE-----EEEecCCCCCCCceEEE
Confidence 9999999999921100 0134566778888887 89999987 89999
Q ss_pred eeccCCcceEEEEecC-Cc----eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 310 GSASKGEHKIYIWDRA-GY----LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 310 gs~~~~dg~I~iwd~~-~~----~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
++. |+.|+||++. .. ....+..|...|.+++|+|++++||+++.||.|+||+......|.
T Consensus 234 ~s~---D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~ 298 (316)
T 3bg1_A 234 CSQ---DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWV 298 (316)
T ss_dssp EET---TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEE
T ss_pred EcC---CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEE
Confidence 999 9999999987 21 234567789999999999999999999999999999987544443
No 46
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-37 Score=304.06 Aligned_cols=287 Identities=14% Similarity=0.149 Sum_probs=215.9
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC--ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR--GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~--~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
+.++|+|++|+|+|++||+|+.||.|+||++.++ ..+..+.+| ...|++++|+|++++|++++.|++|++||+.++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH--DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCC--SSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecC--CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 5678999999999999999999999999999988 667777655 999999999999999999999999999999987
Q ss_pred e---EEEEEEcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 100 E---KITRIVLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 100 ~---~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
. ....+..+ ..+..+.|+|++. ++++++.++.+++||+..+......... ...|...
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------------~~~h~~~ 148 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNED---KFAVGSGARVISVCYFEQENDWWVSKHL----------------KRPLRST 148 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSS---CCEEEESSSCEEECCC-----CCCCEEE----------------CSSCCSC
T ss_pred CceeeeeEecccCCceEEEEECCCCC---EEEEEecCCeEEEEEECCcccceeeeEe----------------ecccCCC
Confidence 7 44444434 4688999999754 7889999999999999887631111110 0113448
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCC------------------CcEEEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKS------------------NQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
|++++|+|++++|++|+.||.|++||+.. ++++..+ .|...|++++|+|++++|++++.|
T Consensus 149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETT
T ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCC
Confidence 99999999999999999999999999853 4445555 789999999999999999999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
+.|++||+..... ....+..+..|...+. +++|+|+|++|++|+. ++
T Consensus 227 ~~i~iwd~~~~~~-------------------------~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~---~~ 273 (377)
T 3dwl_C 227 SSVTIAYPSAPEQ-------------------------PPRALITVKLSQLPLR-----SLLWANESAIVAAGYN---YS 273 (377)
T ss_dssp TEEC-CEECSTTS-------------------------CEEECCCEECSSSCEE-----EEEEEETTEEEEEESS---SS
T ss_pred CcEEEEECCCCCC-------------------------cceeeEeecCCCCceE-----EEEEcCCCCEEEEEcC---Cc
Confidence 9999999322100 0011556677777777 8999999999999986 55
Q ss_pred eEEEEecC--C-cee----------------------------------EEE----------------ecCCCceEEEEE
Q 008844 318 KIYIWDRA--G-YLV----------------------------------KIL----------------EGPKEALIDLAW 344 (551)
Q Consensus 318 ~I~iwd~~--~-~~~----------------------------------~~l----------------~~h~~~v~~l~~ 344 (551)
.+ +|+.. + ... ..+ ..|...|+++++
T Consensus 274 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~ 352 (377)
T 3dwl_C 274 PI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRP 352 (377)
T ss_dssp EE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEE
T ss_pred EE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEec
Confidence 55 66654 2 000 011 128999999998
Q ss_pred ecCCC----eEEEEcCCCcEEEEec
Q 008844 345 HPVHP----IIVSVSLTGWVYIWAK 365 (551)
Q Consensus 345 sp~~~----~l~s~s~dg~i~iW~~ 365 (551)
.+... .|+|+|.||.|+||++
T Consensus 353 ~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 353 YAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEETTEEEEEEEEETTSEEEEECC
T ss_pred cCCCCCceEEEEeecCCCcEEEecC
Confidence 76543 5999999999999985
No 47
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.9e-35 Score=285.00 Aligned_cols=257 Identities=19% Similarity=0.317 Sum_probs=218.6
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc----eeeEeecccccccEEEEEecC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG----IAKELRDKECVAAITSVCWSK 77 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~----~~~~~~~~~h~~~V~~l~~s~ 77 (551)
.|+|||..++.....+.. |...|.+++|+|+|++||+|+.|+.|++|++.++. ....+.+ |...|.++.|++
T Consensus 78 ~v~iWd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~ 153 (340)
T 1got_B 78 KLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG--HTGYLSCCRFLD 153 (340)
T ss_dssp EEEEEETTTCCEEEEEEC--SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC--CSSCEEEEEEEE
T ss_pred cEEEEECCCCCcceEeec--CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC--CCccEEEEEECC
Confidence 478999998887666654 78899999999999999999999999999998653 4445554 489999999998
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCC
Q 008844 78 YGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVA 156 (551)
Q Consensus 78 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 156 (551)
++. |++++.|++|++||+.++..+..+..|. .+..+.|+|++. ++++++.++.+++||+.++......
T Consensus 154 ~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~sg~~d~~v~~wd~~~~~~~~~~------- 222 (340)
T 1got_B 154 DNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSGACDASAKLWDVREGMCRQTF------- 222 (340)
T ss_dssp TTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTCSEEEEE-------
T ss_pred CCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC---EEEEEeCCCcEEEEECCCCeeEEEE-------
Confidence 764 8999999999999999999999988765 578999999754 8999999999999999988754332
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEeeCCCEEEEee
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~t~s 235 (551)
..|...|++++|+|++++|++|+.||.|++||+++++.+..+.. .+...|++++|+|+|++|++++
T Consensus 223 -------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 223 -------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp -------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred -------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence 12334899999999999999999999999999999888776632 2235799999999999999999
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKG 315 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~ 315 (551)
.|+.|++||+. ....+..+.+|...|. +++|+|+|.+|++|+.
T Consensus 290 ~d~~i~vwd~~-----------------------------~~~~~~~~~~h~~~v~-----~~~~s~dg~~l~s~s~--- 332 (340)
T 1got_B 290 DDFNCNVWDAL-----------------------------KADRAGVLAGHDNRVS-----CLGVTDDGMAVATGSW--- 332 (340)
T ss_dssp TTSEEEEEETT-----------------------------TCCEEEEEECCSSCEE-----EEEECTTSSCEEEEET---
T ss_pred CCCeEEEEEcc-----------------------------cCcEeeEeecCCCcEE-----EEEEcCCCCEEEEEcC---
Confidence 99999999932 2445667788988887 8999999999999999
Q ss_pred cceEEEEe
Q 008844 316 EHKIYIWD 323 (551)
Q Consensus 316 dg~I~iwd 323 (551)
|+.|+|||
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999996
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9e-35 Score=333.34 Aligned_cols=357 Identities=17% Similarity=0.192 Sum_probs=267.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC--CC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK--YG 79 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~--~g 79 (551)
.|.|||..++.....+.. |.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+| ...|.+++|+| ++
T Consensus 638 ~i~vw~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 713 (1249)
T 3sfz_A 638 TLQVFKAETGEKLLDIKA--HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH--SEQVNCCHFTNKSNH 713 (1249)
T ss_dssp CEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECSSSSC
T ss_pred eEEEEECCCCCEEEEecc--CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--CCcEEEEEEecCCCc
Confidence 478999999987766654 8899999999999999999999999999999999999999866 89999999999 55
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCC----
Q 008844 80 HRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD---- 154 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~---- 154 (551)
.++++++.|+.|++||+.++.++..+..+. .+..+.|+|++. .+++++.++.+++||+.++...........
T Consensus 714 ~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT---EEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC---EEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence 689999999999999999999999887765 577899999764 899999999999999988764332111000
Q ss_pred ---------CCCCCCCCC----------------------CCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECC
Q 008844 155 ---------VANGIAPSS----------------------RNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK 203 (551)
Q Consensus 155 ---------~~~~~~~~~----------------------~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~ 203 (551)
......... ........+...+.+++|+|++.++++|+.+|.|.+||+.
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 000000000 0000112456689999999999999999999999999999
Q ss_pred CCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee
Q 008844 204 SNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF 283 (551)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (551)
++..+..+. .|...|++++|+|+|++|++++.|+.|++|++..................................+...
T Consensus 871 ~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1249)
T 3sfz_A 871 SRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949 (1249)
T ss_dssp TTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEE
T ss_pred CCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEE
Confidence 999888876 8999999999999999999999999999999321100000000000000000000000000000011111
Q ss_pred cccccc---cceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCc
Q 008844 284 REFQDS---ITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGW 359 (551)
Q Consensus 284 ~~~~~~---v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~ 359 (551)
...... .....+.+++|+|+|+++++|+. +|.|++|++. +..+..+.+|...|++++|+|++++|++++.||.
T Consensus 950 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~---~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A 950 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE---DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp EESSCCEEEECCSCEEEEEECTTSSEEEEEET---TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred ecCcceEEEcccCcEEEEEEcCCCCEEEEEcC---CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 111110 11122448999999999999999 9999999999 9999999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 008844 360 VYIWAKDYTE 369 (551)
Q Consensus 360 i~iW~~~~~~ 369 (551)
|++|++.+++
T Consensus 1027 i~vwd~~~~~ 1036 (1249)
T 3sfz_A 1027 IQVWNWQTGD 1036 (1249)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCc
Confidence 9999998765
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.5e-35 Score=286.94 Aligned_cols=288 Identities=14% Similarity=0.155 Sum_probs=232.7
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~ 99 (551)
..+.++|.+++|+|+|++|+++..++.+.+|............ +|...|++++|+|++++|++++ |+.|++|++.++
T Consensus 6 ~~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 6 AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL--NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp EEEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE--CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTST
T ss_pred cccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceec--cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCC
Confidence 3466889999999999999999888877777655443333333 4599999999999999999999 999999999876
Q ss_pred eE---EEEEE---cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 100 EK---ITRIV---LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 100 ~~---~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
.. +..+. ....+..+.|+|++. ++++++.++.+.+|++.++......... .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------------~~~ 141 (337)
T 1gxr_A 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGC---TLIVGGEASTLSIWDLAAPTPRIKAELT------------------SSA 141 (337)
T ss_dssp TCCSCSEEEECSCTTSBEEEEEECTTSS---EEEEEESSSEEEEEECCCC--EEEEEEE------------------CSS
T ss_pred CceeeeecccccCCCCcEEEEEEcCCCC---EEEEEcCCCcEEEEECCCCCcceeeecc------------------cCC
Confidence 52 23333 335688999999754 7899999999999999987633221111 122
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccc
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
..+.+++|+|++++|++++.+|.|++||+.+++.+..+. .|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~------ 214 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE------ 214 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT------
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCC------
Confidence 378999999999999999999999999999999888876 6889999999999999999999999999999321
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEe
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILE 333 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~ 333 (551)
...+..+ .+...+. +++|+|++++|++++. ++.|++|++.......+.
T Consensus 215 -----------------------~~~~~~~-~~~~~v~-----~~~~s~~~~~l~~~~~---~~~i~~~~~~~~~~~~~~ 262 (337)
T 1gxr_A 215 -----------------------GRQLQQH-DFTSQIF-----SLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLH 262 (337)
T ss_dssp -----------------------TEEEEEE-ECSSCEE-----EEEECTTSSEEEEEET---TSCEEEEETTSSCEEEEC
T ss_pred -----------------------CceEeee-cCCCceE-----EEEECCCCCEEEEEcC---CCcEEEEECCCCCeEEEc
Confidence 2223322 3444554 8899999999999999 899999999933345678
Q ss_pred cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 334 GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 334 ~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
.|...|.+++|+|++++|++++.||.|++|++.+++.
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 8999999999999999999999999999999987654
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-36 Score=306.88 Aligned_cols=307 Identities=9% Similarity=-0.001 Sum_probs=217.0
Q ss_pred ccccccCCCCcccee-e-cccccceEEEEEEcCC------CCEEEEEeCCCeEEEEeccCCcee-----------eEeec
Q 008844 3 APIIDPLQGDFPEVI-E-EYLEHGVMKCIAFNRR------GTLLAAGCSDGSCVIWDFETRGIA-----------KELRD 63 (551)
Q Consensus 3 l~lwd~~~~~~~~~l-~-~~~h~~~V~~l~fs~d------g~~latg~~dg~I~iwd~~~~~~~-----------~~~~~ 63 (551)
|+|||..+++....+ . ...|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++... ..+.+
T Consensus 185 I~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~ 264 (524)
T 2j04_B 185 IQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL 264 (524)
T ss_dssp EEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC
T ss_pred EEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc
Confidence 679998777643211 1 1225688999999997 579999999999999999866421 24444
Q ss_pred ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe-EEEEEEcCC-CeeEE--EEecCCCCCcEEEEeeCCCCcEEEE
Q 008844 64 KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-KITRIVLQQ-TPLQA--RLHPGSSTPSLCLACPLSSAPMIVD 139 (551)
Q Consensus 64 ~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~-~~~~~--~~~p~~~~~~~~~~~~~~~~i~i~d 139 (551)
|...|++++|+++ ..|++|+.||+|++||+.++. +...+..|. .+.++ .++|++ ..++++++.|+++++||
T Consensus 265 --h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g--~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 265 --ADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE--DTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp --TTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS--CCEEEEEETTSEEEEEC
T ss_pred --CCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC--CeEEEEeccCCeEEEEE
Confidence 4899999999986 489999999999999998774 445566665 46666 345543 15899999999999999
Q ss_pred cCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccce
Q 008844 140 LSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVI 219 (551)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i 219 (551)
++++........... ...+.+++|+|++..|++++.+++|++||++++.++..+. .|...|
T Consensus 340 ~~~~~~~~~~~~~~~------------------~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V 400 (524)
T 2j04_B 340 PKDIATTKTTVSRFR------------------GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTI 400 (524)
T ss_dssp GGGHHHHCEEEEECS------------------CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCE
T ss_pred CCCCCcccccccccc------------------cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCce
Confidence 988664322111100 0147889999999999999999999999999998866665 799999
Q ss_pred EEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeE
Q 008844 220 KNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 299 (551)
++|+|+|+|++|++|+.|++|++|++... .+..............+..++
T Consensus 401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~------------------------------~~~~~~~~~~~~~~~~v~~v~ 450 (524)
T 2j04_B 401 TAIGVSRLHPMVLAGSADGSLIITNAARR------------------------------LLHGIKNSSATQKSLRLWKWD 450 (524)
T ss_dssp EEEECCSSCCBCEEEETTTEEECCBSCSS------------------------------TTTCC------CCCCEEEECB
T ss_pred EEEEeCCCCCeEEEEECCCEEEEEechHh------------------------------hccccccCccceeeeEEEEec
Confidence 99999999999999999999999993210 011111111111111122789
Q ss_pred EcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCC---eEEEEcCCCcEEEEecCC
Q 008844 300 FSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHP---IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 300 ~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~---~l~s~s~dg~i~iW~~~~ 367 (551)
|+|+|..+.. .. +..+..|+..+.++..+.+|...|.+|+|+|+++ +||+++.||.|+||++..
T Consensus 451 ~sp~g~~~~~-~~---~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 451 YSIKDDKYRI-DS---SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCSSSCEEEE-CC---CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred cCCCCCeEEc-cC---CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 9999996633 22 2233334444788889999999999999999965 999999999999999874
No 51
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-35 Score=291.78 Aligned_cols=285 Identities=15% Similarity=0.069 Sum_probs=213.8
Q ss_pred ceEEEEEEcCCCCEEEEEeCCC-------eEEEEeccCCce--------eeEeecccccccEEEEEecCCCCEEEEE---
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDG-------SCVIWDFETRGI--------AKELRDKECVAAITSVCWSKYGHRILVS--- 85 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg-------~I~iwd~~~~~~--------~~~~~~~~h~~~V~~l~~s~~g~~l~s~--- 85 (551)
.+|+|++|+|+|++||+|+.+. .|+||++..+.. ...+....|...|.+++++ ++.++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 5899999999999999997543 599999875432 2223333457888888775 4566665
Q ss_pred --------eCCCCEEEEEcCCCeE-EE---EEEcC------CCeeEEEEecCCCCCcEE-EEeeCCCCcEEEEcCCCcee
Q 008844 86 --------AADKSLTLWDVLKGEK-IT---RIVLQ------QTPLQARLHPGSSTPSLC-LACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 86 --------s~dg~i~vwd~~~~~~-~~---~~~~~------~~~~~~~~~p~~~~~~~~-~~~~~~~~i~i~d~~~~~~~ 146 (551)
+.|+++++|++..+.. +. ..... ..+..++|+|++.. ++ ++++.++.|++||+.++...
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~--la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV--AAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC--EEEEESCSSCEEEEEETTTTEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE--EEEEECCCCCEEEEeECCCCcEE
Confidence 3578899999866532 21 11111 12567899998752 33 34457899999999998765
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEE-eeeccCccceEEEEEe
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRA-LVPVSGAAVIKNIVFS 225 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~l~~s 225 (551)
.... +...|.+++|+|+|++|++++.+ .+.+|+..++..+. .....|...|.+++|+
T Consensus 171 ~~~~---------------------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 228 (365)
T 4h5i_A 171 FEIE---------------------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFI 228 (365)
T ss_dssp EEEE---------------------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEE
T ss_pred EEeC---------------------CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEc
Confidence 4321 12279999999999999998854 56777777776643 3333688899999999
Q ss_pred eCCCEEEEeeCCC----eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 226 RNGQYLLTNSNDR----TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 226 ~~g~~l~t~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
|++++|++++.|+ .+++|++.... ........+..|...|+ +++||
T Consensus 229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~-------------------------~~~~~~~~~~~~~~~V~-----~~~~S 278 (365)
T 4h5i_A 229 ADDTVLIAASLKKGKGIVLTKISIKSGN-------------------------TSVLRSKQVTNRFKGIT-----SMDVD 278 (365)
T ss_dssp ETTEEEEEEEESSSCCEEEEEEEEETTE-------------------------EEEEEEEEEESSCSCEE-----EEEEC
T ss_pred CCCCEEEEEecCCcceeEEeecccccce-------------------------ecceeeeeecCCCCCeE-----eEEEC
Confidence 9999999999887 67888821110 00112344566777776 89999
Q ss_pred CCCCEEEEeeccCCcceEEEEecC-CceeEEE-ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL-EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l-~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
|+|++||+|+. |+.|+|||+. ++++..+ .+|..+|++|+|+|++++|||+|.|++|+||++..
T Consensus 279 pdg~~lasgs~---D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 279 MKGELAVLASN---DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTSCEEEEEET---TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCCceEEEcC---CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999 9999999999 8888874 78999999999999999999999999999999964
No 52
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-34 Score=289.58 Aligned_cols=279 Identities=13% Similarity=0.172 Sum_probs=227.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
+.+++|++ ..+++++.||.|++|++.++.....+... |...|++++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM 172 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence 45577765 45777889999999999999988877753 6899999999999999999999999999999999999988
Q ss_pred EcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC
Q 008844 106 VLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184 (551)
Q Consensus 106 ~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 184 (551)
..+. .+..+.|.+ ..+++++.++.+.+||+........... .|...|.+++|+|+
T Consensus 173 ~~~~~~v~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 173 AGHQARVGCLSWNR-----HVLSSGSRSGAIHHHDVRIANHQIGTLQ-------------------GHSSEVCGLAWRSD 228 (401)
T ss_dssp CCCSSCEEEEEEET-----TEEEEEETTSEEEEEETTSSSCEEEEEE-------------------CCSSCEEEEEECTT
T ss_pred cCCCCceEEEEECC-----CEEEEEcCCCCEEEEecccCcceeeEEc-------------------CCCCCeeEEEEcCC
Confidence 7665 467777854 3899999999999999985443322211 23338999999999
Q ss_pred CCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCC-EEEEee--CCCeEEEEeCcCCccccchhhhhhhc
Q 008844 185 GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQ-YLLTNS--NDRTIRIYDNLLPLKNGLEALVDIEK 261 (551)
Q Consensus 185 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~t~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (551)
+.+|++|+.||.|++||+++++.+..+. .|...|.+++|+|++. ++++++ .|+.|++||+.
T Consensus 229 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~--------------- 292 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA--------------- 292 (401)
T ss_dssp SSEEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT---------------
T ss_pred CCEEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC---------------
Confidence 9999999999999999999999887775 7889999999999775 555554 79999999932
Q ss_pred cCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEee--ccCCcceEEEEecC-CceeE--EEecCC
Q 008844 262 GIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGS--ASKGEHKIYIWDRA-GYLVK--ILEGPK 336 (551)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs--~~~~dg~I~iwd~~-~~~~~--~l~~h~ 336 (551)
...++..+. +...+. +++|+|++++|++++ . +|.|+||++. +.... .+.+|.
T Consensus 293 --------------~~~~~~~~~-~~~~v~-----~~~~s~~~~~l~~~~g~~---dg~i~v~~~~~~~~~~~~~~~~h~ 349 (401)
T 4aez_A 293 --------------TGARVNTVD-AGSQVT-----SLIWSPHSKEIMSTHGFP---DNNLSIWSYSSSGLTKQVDIPAHD 349 (401)
T ss_dssp --------------TCCEEEEEE-CSSCEE-----EEEECSSSSEEEEEECTT---TCEEEEEEEETTEEEEEEEEECCS
T ss_pred --------------CCCEEEEEe-CCCcEE-----EEEECCCCCeEEEEeecC---CCcEEEEecCCccceeEEEecCCC
Confidence 133344443 334454 899999999999954 6 8999999999 55444 467899
Q ss_pred CceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 337 EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 337 ~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
..|.+++|+|++++|++++.||.|++|++.+++.
T Consensus 350 ~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 350 TRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp SCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 9999999999999999999999999999987654
No 53
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.8e-34 Score=282.82 Aligned_cols=252 Identities=13% Similarity=0.208 Sum_probs=210.0
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC----ceeeEeecccccccEEEEEecC--CCCEEEEEeCCCCEEEEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR----GIAKELRDKECVAAITSVCWSK--YGHRILVSAADKSLTLWD 95 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~----~~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~vwd 95 (551)
|.+.|++++|+|++++||+|+.||.|+||++.++ .....+.+| ...|++++|+| ++++|++++.|++|++||
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH--DSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC--SSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC--CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 8899999999999999999999999999999876 355555554 99999999999 699999999999999999
Q ss_pred cCCCe---------EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 96 VLKGE---------KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 96 ~~~~~---------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
+.++. .+..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 108 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLND----------------------------------------------------------- 108 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECC-----------------------------------------------------------
T ss_pred cCCCcccccccCcceeeeecc-----------------------------------------------------------
Confidence 98763 2222221
Q ss_pred CCCCCCCCCceEEEEeeC--CCEEEEEecCceEEEEECCCCcEEEeee------------ccCccceEEEEEeeC---CC
Q 008844 167 YSDGTPPFTPTAACFNKY--GDLVYVGNSKGEILVIDHKSNQIRALVP------------VSGAAVIKNIVFSRN---GQ 229 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~------------~~~~~~i~~l~~s~~---g~ 229 (551)
+...|.+++|+|+ +.+|++++.||.|++||+++++.+..+. ..|...+.+++|+|+ +.
T Consensus 109 -----~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 183 (351)
T 3f3f_A 109 -----SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE 183 (351)
T ss_dssp -----CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC
T ss_pred -----cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCc
Confidence 1227899999999 9999999999999999998876533322 156788999999997 89
Q ss_pred EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC----C
Q 008844 230 YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG----E 305 (551)
Q Consensus 230 ~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg----~ 305 (551)
+|++++.++.+.+|+.... ....+..+..|...|. +++|+|++ +
T Consensus 184 ~l~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~h~~~i~-----~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 184 KLAVSALEQAIIYQRGKDG---------------------------KLHVAAKLPGHKSLIR-----SISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEETTEEEEEEECTTS---------------------------CEEEEEECCCCCSCEE-----EEEECCCSSCSSE
T ss_pred EEEEecCCCcEEEEccCCC---------------------------ceeeeeecCCCCccee-----EEEECCCCCCcce
Confidence 9999999999977772111 1223556677888887 89999998 8
Q ss_pred EEEEeeccCCcceEEEEecC-C----------------------------------------------ceeEEEecCCCc
Q 008844 306 WVIAGSASKGEHKIYIWDRA-G----------------------------------------------YLVKILEGPKEA 338 (551)
Q Consensus 306 ~l~~gs~~~~dg~I~iwd~~-~----------------------------------------------~~~~~l~~h~~~ 338 (551)
+|++++. ||.|++||+. + .++..+.+|...
T Consensus 232 ~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (351)
T 3f3f_A 232 LIATGCK---DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE 308 (351)
T ss_dssp EEEEEET---TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred EEEEEcC---CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence 9999999 9999999998 4 677788899999
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceee
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAF 374 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~ 374 (551)
|++++|+|++++|++++.||.|+||++.+++.|..+
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999999999999999988766543
No 54
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.3e-34 Score=304.11 Aligned_cols=318 Identities=16% Similarity=0.204 Sum_probs=250.6
Q ss_pred CccccccCCCCccceeecccccc---eEEEEEEcCC-CCEEEEEeCCCeEEEEeccCCceeeEeecc--cccccEEEEEe
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHG---VMKCIAFNRR-GTLLAAGCSDGSCVIWDFETRGIAKELRDK--ECVAAITSVCW 75 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~---~V~~l~fs~d-g~~latg~~dg~I~iwd~~~~~~~~~~~~~--~h~~~V~~l~~ 75 (551)
.+++||..+++....+.. |.. .|++++|+|+ +++|++|+.||.|++||+.+++.+..+... .|...|.+++|
T Consensus 184 ~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 261 (615)
T 1pgu_A 184 SVVFYQGPPFKFSASDRT--HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 261 (615)
T ss_dssp EEEEEETTTBEEEEEECS--SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE
T ss_pred cEEEEeCCCcceeeeecc--cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEE
Confidence 378999888876666554 677 8999999999 999999999999999999999988888311 34899999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC-----CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeecc
Q 008844 76 SKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ-----QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPI 150 (551)
Q Consensus 76 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 150 (551)
+ ++.+|++++.|+.|++||+.+++.+..+..+ ..+..+.+. + ...+++++.++.+++||+.++.......
T Consensus 262 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 262 L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-G---NGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-E---TTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-C---CCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 9 9999999999999999999999999999877 345566664 2 3489999999999999998755432211
Q ss_pred ccCCC-----------------------------------------CCCCCCCCC-------------------------
Q 008844 151 AVPDV-----------------------------------------ANGIAPSSR------------------------- 164 (551)
Q Consensus 151 ~~~~~-----------------------------------------~~~~~~~~~------------------------- 164 (551)
..... ...+.....
T Consensus 337 ~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~ 416 (615)
T 1pgu_A 337 GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANN 416 (615)
T ss_dssp CCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECS
T ss_pred CCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcC
Confidence 10000 000000000
Q ss_pred ---------------------CCCCCCCCCCCceEEEEeeCCCEEEEEec-CceEEEEECCCCcEE-EeeeccCccceEE
Q 008844 165 ---------------------NKYSDGTPPFTPTAACFNKYGDLVYVGNS-KGEILVIDHKSNQIR-ALVPVSGAAVIKN 221 (551)
Q Consensus 165 ---------------------~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-dg~i~i~d~~~~~~~-~~~~~~~~~~i~~ 221 (551)
.......+...+++++|+ +++|++++. +|.|++||+.++... ..+ ..|...|++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~v~~ 493 (615)
T 1pgu_A 417 DGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLK-TPLRAKPSY 493 (615)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECS-SCCSSCEEE
T ss_pred CCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccccc-CCccCceEE
Confidence 000000133456677777 778888888 999999999887665 333 278899999
Q ss_pred EEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceeeeeeeEE
Q 008844 222 IVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMHWKAPCF 300 (551)
Q Consensus 222 l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 300 (551)
++|+|++++|++++.||.|++|++. ....+..+.. |...|+ +++|
T Consensus 494 ~~~s~~g~~l~~~~~dg~i~iw~~~-----------------------------~~~~~~~~~~~h~~~v~-----~~~~ 539 (615)
T 1pgu_A 494 ISISPSETYIAAGDVMGKILLYDLQ-----------------------------SREVKTSRWAFRTSKIN-----AISW 539 (615)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETT-----------------------------TTEEEECCSCCCSSCEE-----EEEE
T ss_pred EEECCCCCEEEEcCCCCeEEEeeCC-----------------------------CCcceeEeecCCCCcee-----EEEE
Confidence 9999999999999999999999922 2445556666 777777 8999
Q ss_pred cC----------CCCEEEEeeccCCcceEEEEecC-C-ceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 301 SG----------DGEWVIAGSASKGEHKIYIWDRA-G-YLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 301 s~----------dg~~l~~gs~~~~dg~I~iwd~~-~-~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+| ++++|++++. |+.|+||++. + .++..+.+|...|++++|+|+++ |++++.||.|++|++..
T Consensus 540 sp~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 540 KPAEKGANEEEIEEDLVATGSL---DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CCCC------CCSCCEEEEEET---TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cCccccccccccCCCEEEEEcC---CCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99 9999999999 9999999999 5 88999999999999999999999 99999999999999874
No 55
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-34 Score=285.50 Aligned_cols=268 Identities=14% Similarity=0.178 Sum_probs=204.2
Q ss_pred ccccccCCCCccce--eecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee--EeecccccccEEEEEecCC
Q 008844 3 APIIDPLQGDFPEV--IEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAK--ELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 3 l~lwd~~~~~~~~~--l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~--~~~~~~h~~~V~~l~~s~~ 78 (551)
+.+|+..++..... .....|...|++++|+|++.+| +++.||+|+|||+.+++... .+...+|...|++|+|+|+
T Consensus 72 v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd 150 (357)
T 4g56_B 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD 150 (357)
T ss_dssp EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS
T ss_pred EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC
Confidence 45566655543322 2233477889999999998655 56789999999999876543 3334467999999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCC
Q 008844 79 GHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVAN 157 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (551)
+++|++++.|++|++||+.+++.+..+..+. .+..+.|+|++. .++++++.++.+++||+++++......
T Consensus 151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~~~~s~~~dg~v~~wd~~~~~~~~~~~------- 221 (357)
T 4g56_B 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--TIFLSCGEDGRILLWDTRKPKPATRID------- 221 (357)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--SCEEEEETTSCEEECCTTSSSCBCBCC-------
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--ceeeeeccCCceEEEECCCCceeeeee-------
Confidence 9999999999999999999999999998765 477889998753 378899999999999998876543211
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC-CEEEEee
Q 008844 158 GIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG-QYLLTNS 235 (551)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~t~s 235 (551)
...+...+++++|+|++ .+|++|+.|+.|++||+++++.+..+. .|...|++++|+|++ ++|++++
T Consensus 222 -----------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 222 -----------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp -----------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEE
T ss_pred -----------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEe
Confidence 11223378999999985 789999999999999999999887776 788999999999987 5799999
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASK 314 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~ 314 (551)
.|++|+|||+. ..+++. ..+|...|+ +++|+| ++.+|++++.
T Consensus 290 ~D~~i~iwd~~-----------------------------~~~~~~-~~~H~~~V~-----~vafsP~d~~~l~s~s~-- 332 (357)
T 4g56_B 290 EDCTVAVLDAD-----------------------------FSEVFR-DLSHRDFVT-----GVAWSPLDHSKFTTVGW-- 332 (357)
T ss_dssp TTSCEEEECTT-----------------------------SCEEEE-ECCCSSCEE-----EEEECSSSTTEEEEEET--
T ss_pred CCCEEEEEECC-----------------------------CCcEeE-ECCCCCCEE-----EEEEeCCCCCEEEEEcC--
Confidence 99999999922 133333 346888887 899998 8999999999
Q ss_pred CcceEEEEecC--CceeE
Q 008844 315 GEHKIYIWDRA--GYLVK 330 (551)
Q Consensus 315 ~dg~I~iwd~~--~~~~~ 330 (551)
|+.|++|++. ++...
T Consensus 333 -Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 333 -DHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp -TSCEEEEECC-------
T ss_pred -CCeEEEEECCCCCcccc
Confidence 9999999997 44433
No 56
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=314.82 Aligned_cols=214 Identities=13% Similarity=0.133 Sum_probs=175.3
Q ss_pred eeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 16 ~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
.+..+.|.+.|+|++|+|+|++||+|+.||+|+||+..+.+....+ .|..+|.+|+|+| |++|++++.|++|+|||
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~---~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL---EDRSAIKEMRFVK-GIYLVVINAKDTVYVLS 85 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC---SSCCCEEEEEEET-TTEEEEEETTCEEEEEE
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc---CCCCCEEEEEEcC-CCEEEEEECcCeEEEEE
Confidence 3344568899999999999999999999999999999877665443 3578999999999 88999999999999999
Q ss_pred cCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
+.+++++..+..+..+.++.|+|++. ++++++.++.|++||+.++............. ......|...
T Consensus 86 ~~~~~~~~~~~~~~~V~~v~~sp~g~---~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~---------~~~~~~h~~~ 153 (902)
T 2oaj_A 86 LYSQKVLTTVFVPGKITSIDTDASLD---WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS---------SFFPAARLSP 153 (902)
T ss_dssp TTTCSEEEEEECSSCEEEEECCTTCS---EEEEEETTSCEEEEETTTTEEEEEEECCHHHH---------HTCSSSCCCC
T ss_pred CCCCcEEEEEcCCCCEEEEEECCCCC---EEEEEcCCCcEEEEECCCCccccceecccccc---------ccccccCCCC
Confidence 99999999998777899999999864 79999999999999999887532211000000 0011234558
Q ss_pred ceEEEEeeC-CCEEEEEecCceEEEEECCCCcEEEeeecc-----------------CccceEEEEEeeCCCEEEEeeCC
Q 008844 176 PTAACFNKY-GDLVYVGNSKGEILVIDHKSNQIRALVPVS-----------------GAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 176 i~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-----------------~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
|++++|+|+ +.+|++|+.+|.| +||+++++.+..+... |...|++++|+|+|++|++++.|
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 999999996 4789999999999 9999999887776421 24779999999999999999999
Q ss_pred CeEEEEeCc
Q 008844 238 RTIRIYDNL 246 (551)
Q Consensus 238 g~i~iwd~~ 246 (551)
|+|++||+.
T Consensus 233 g~i~lWd~~ 241 (902)
T 2oaj_A 233 NSLVFWDAN 241 (902)
T ss_dssp CCEEEEETT
T ss_pred CeEEEEECC
Confidence 999999953
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-34 Score=284.13 Aligned_cols=269 Identities=18% Similarity=0.295 Sum_probs=218.6
Q ss_pred CccccccCCCCccceeeccc----------------ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeeccc
Q 008844 2 NAPIIDPLQGDFPEVIEEYL----------------EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKE 65 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~----------------h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~ 65 (551)
.+.||+..++.....+.... +...|++++|+|+|++||+|+.|++|+|||+.+++.+..+.+|
T Consensus 86 ~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h- 164 (393)
T 1erj_A 86 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH- 164 (393)
T ss_dssp CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-
T ss_pred cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-
Confidence 36789988887655553311 1124999999999999999999999999999999998888765
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 66 CVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 66 h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
...|.+++|+|++.+|++++.|++|++||+.++++...+..+..+..+.++|.. ..++++++.++.+++||+.++..
T Consensus 165 -~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~s~d~~v~iwd~~~~~~ 241 (393)
T 1erj_A 165 -EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD--GKYIAAGSLDRAVRVWDSETGFL 241 (393)
T ss_dssp -SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT--CCEEEEEETTSCEEEEETTTCCE
T ss_pred -CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC--CCEEEEEcCCCcEEEEECCCCcE
Confidence 899999999999999999999999999999999999999888889999999832 34899999999999999998875
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCc------------EEEeeec
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQ------------IRALVPV 213 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~------------~~~~~~~ 213 (551)
....... ......|...|.+++|+|+|.+|++|+.||.|++||+++.. +...+.
T Consensus 242 ~~~~~~~-------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~- 307 (393)
T 1erj_A 242 VERLDSE-------------NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI- 307 (393)
T ss_dssp EEEEC-------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE-
T ss_pred EEeeccc-------------ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe-
Confidence 4322110 01112345589999999999999999999999999997642 233333
Q ss_pred cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee
Q 008844 214 SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293 (551)
Q Consensus 214 ~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 293 (551)
.|...|.+++|+|++.+|++++.|+.|++||+ ..+.++..+.+|...|.
T Consensus 308 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~-----------------------------~~~~~~~~l~~h~~~v~-- 356 (393)
T 1erj_A 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDK-----------------------------KSGNPLLMLQGHRNSVI-- 356 (393)
T ss_dssp CCSSCEEEEEECGGGCEEEEEETTSEEEEEET-----------------------------TTCCEEEEEECCSSCEE--
T ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEEC-----------------------------CCCeEEEEECCCCCCEE--
Confidence 78899999999999999999999999999992 22455677888988888
Q ss_pred eeeeeEEcC------CCCEEEEeeccCCcceEEEEecC
Q 008844 294 HWKAPCFSG------DGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 294 ~~~~~~~s~------dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
+++|++ ++.+|++|+. |+.|+||++.
T Consensus 357 ---~v~~~~~~~~~p~~~~l~sgs~---Dg~i~iW~~~ 388 (393)
T 1erj_A 357 ---SVAVANGSSLGPEYNVFATGSG---DCKARIWKYK 388 (393)
T ss_dssp ---EEEECSSCTTCTTCEEEEEEET---TSEEEEEEEE
T ss_pred ---EEEecCCcCcCCCCCEEEEECC---CCcEEECccc
Confidence 666654 7899999999 9999999986
No 58
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=315.08 Aligned_cols=354 Identities=12% Similarity=0.111 Sum_probs=235.4
Q ss_pred CccccccCCCCccc-e--------eecccccceEEEEEEcCC-CCEEEEEeCCCeEEEEeccCCceeeEeecc-------
Q 008844 2 NAPIIDPLQGDFPE-V--------IEEYLEHGVMKCIAFNRR-GTLLAAGCSDGSCVIWDFETRGIAKELRDK------- 64 (551)
Q Consensus 2 nl~lwd~~~~~~~~-~--------l~~~~h~~~V~~l~fs~d-g~~latg~~dg~I~iwd~~~~~~~~~~~~~------- 64 (551)
.|+|||..++.... . .....|.+.|++++|+|+ +.+|++|+.||.| |||+.+++.+..+..|
T Consensus 121 ~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~ 199 (902)
T 2oaj_A 121 SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPG 199 (902)
T ss_dssp CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCC
T ss_pred cEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCC
Confidence 47899988775421 0 111237789999999996 5799999999999 9999999988888654
Q ss_pred ---------cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEc-----C--------------CCeeEEEE
Q 008844 65 ---------ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVL-----Q--------------QTPLQARL 116 (551)
Q Consensus 65 ---------~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~--------------~~~~~~~~ 116 (551)
.|...|++++|+|+|++|++++.|++|++||+.+++++..... + ..+..++|
T Consensus 200 ~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w 279 (902)
T 2oaj_A 200 GDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW 279 (902)
T ss_dssp STTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred cccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence 2457899999999999999999999999999999988764221 1 24678888
Q ss_pred ecCCC--CCcEEEEeeCC-----CCcEEEEcCC------------------Cc-eeeecc--------------------
Q 008844 117 HPGSS--TPSLCLACPLS-----SAPMIVDLST------------------GS-TSILPI-------------------- 150 (551)
Q Consensus 117 ~p~~~--~~~~~~~~~~~-----~~i~i~d~~~------------------~~-~~~~~~-------------------- 150 (551)
++... ...++++++.+ ..+.+|++.. +. ...+..
T Consensus 280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~ 359 (902)
T 2oaj_A 280 MCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFA 359 (902)
T ss_dssp EECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHH
T ss_pred EecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcC
Confidence 76422 12345555444 2566666310 00 000000
Q ss_pred -----------------ccCCCCCC--CCCC----------------------------------CCCCCCCCCCCCCce
Q 008844 151 -----------------AVPDVANG--IAPS----------------------------------SRNKYSDGTPPFTPT 177 (551)
Q Consensus 151 -----------------~~~~~~~~--~~~~----------------------------------~~~~~~~~~~~~~i~ 177 (551)
...+...+ .... ........+|...+.
T Consensus 360 g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~ 439 (902)
T 2oaj_A 360 GCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKR 439 (902)
T ss_dssp HTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCC
T ss_pred CCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCC
Confidence 00000000 0000 000011122333455
Q ss_pred EEEEeeCCCEEEEEecCceEEEEECCCCcEE----Eeee------ccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcC
Q 008844 178 AACFNKYGDLVYVGNSKGEILVIDHKSNQIR----ALVP------VSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLL 247 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~----~~~~------~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~ 247 (551)
+++|+|++++|++|+.||+|++||+.++... .... ..|...|++++|+|+|++||+|+.||+|+||++..
T Consensus 440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519 (902)
T ss_dssp CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC
Confidence 6677899999999999999999999887531 1111 16788999999999999999999999999999432
Q ss_pred Cccccc-----hhhhhhhc---cCCC-CCccee-------eeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEee
Q 008844 248 PLKNGL-----EALVDIEK---GIAE-PNGIEK-------MKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGS 311 (551)
Q Consensus 248 ~~~~~~-----~~~~~~~~---~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs 311 (551)
...... ..-..+.. .... ...... ....+..++..+.+|...|+ +++||||| +||+|+
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~-----svafSpdG-~lAsgs 593 (902)
T 2oaj_A 520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS-----AINNSNIG-FVGIAY 593 (902)
T ss_dssp CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE-----EEEECBTS-EEEEEE
T ss_pred ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE-----EEEecCCc-EEEEEe
Confidence 210000 00000000 0000 000000 00012345777888988888 89999999 999999
Q ss_pred ccCCcceEEEEecC-CceeE-----EEe-cCCCceEEEEEe-----cCC---CeEEEEcCCCcEEEEec
Q 008844 312 ASKGEHKIYIWDRA-GYLVK-----ILE-GPKEALIDLAWH-----PVH---PIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 312 ~~~~dg~I~iwd~~-~~~~~-----~l~-~h~~~v~~l~~s-----p~~---~~l~s~s~dg~i~iW~~ 365 (551)
. |+.|+|||+. +..+. .+. +|...|++|+|+ ||+ ++|++++.|++|++|++
T Consensus 594 ~---D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 594 A---AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp T---TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred C---CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9 9999999998 55443 233 899999999999 886 79999999999999999
No 59
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1e-33 Score=300.28 Aligned_cols=330 Identities=12% Similarity=0.092 Sum_probs=245.4
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeEeecccccc---cEEEEEecC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGIAKELRDKECVA---AITSVCWSK 77 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~---~V~~l~~s~ 77 (551)
.|.+|| +++....+. .|...|.+++|+|++. +|++|+.|+.|++||+.+++.+..+..| .. .|++++|+|
T Consensus 143 ~v~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 143 VFISWD--SGNSLGEVS--GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH--HKQGSFVRDVEFSP 216 (615)
T ss_dssp EEEETT--TCCEEEECC--SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS--SCTTCCEEEEEECS
T ss_pred EEEEEE--CCCcceeee--cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeeccc--CCCCceEEEEEECC
Confidence 356777 444444443 3789999999999998 8999999999999999999999988766 77 999999999
Q ss_pred C-CCEEEEEeCCCCEEEEEcCCCeEEEEE-----EcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccc
Q 008844 78 Y-GHRILVSAADKSLTLWDVLKGEKITRI-----VLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIA 151 (551)
Q Consensus 78 ~-g~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 151 (551)
+ +++|++++.|+.|++||+.+++.+..+ .....+..+.|+ + ..++++++.++.+++||+.++........
T Consensus 217 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D---SQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S---SSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C---CCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 9 999999999999999999999999988 344568888888 4 34899999999999999998876443221
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEee-----
Q 008844 152 VPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR----- 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~----- 226 (551)
.. ......+.++.|+ ++.++++|+.+|.|++||+.+++.+..+. .|...|++++| |
T Consensus 293 ~~----------------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~-~~l~~~ 353 (615)
T 1pgu_A 293 DK----------------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTV-NPLISG 353 (615)
T ss_dssp CT----------------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEET-TTTEEE
T ss_pred CC----------------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEe-cCcEEE
Confidence 11 0111267778885 88999999999999999999887776664 45555555555 3
Q ss_pred ----------------------------CCCEEEEeeCCCeEEEEeCcCCcc---------------------c------
Q 008844 227 ----------------------------NGQYLLTNSNDRTIRIYDNLLPLK---------------------N------ 251 (551)
Q Consensus 227 ----------------------------~g~~l~t~s~Dg~i~iwd~~~~~~---------------------~------ 251 (551)
++.+|++++.|+.|++|++..... .
T Consensus 354 ~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 433 (615)
T 1pgu_A 354 SYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 433 (615)
T ss_dssp ETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEE
T ss_pred CCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEe
Confidence 366677777777777777321100 0
Q ss_pred --cchhhhhhhcc------------CC--C--CCcceeeeeccceee-eeecccccccceeeeeeeEEcCCCCEEEEeec
Q 008844 252 --GLEALVDIEKG------------IA--E--PNGIEKMKMVGSKCL-ALFREFQDSITKMHWKAPCFSGDGEWVIAGSA 312 (551)
Q Consensus 252 --~~~~~~~~~~~------------~~--~--~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~ 312 (551)
..+.+..+... .. . ...+..+........ ..+..|...+. +++|+|+|++|++++.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 434 SFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS-----YISISPSETYIAAGDV 508 (615)
T ss_dssp TTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE-----EEEECTTSSEEEEEET
T ss_pred ccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceE-----EEEECCCCCEEEEcCC
Confidence 00000000000 00 0 011111222211111 44455666666 8999999999999999
Q ss_pred cCCcceEEEEecC-CceeEEEec-CCCceEEEEEec----------CCCeEEEEcCCCcEEEEecCCC
Q 008844 313 SKGEHKIYIWDRA-GYLVKILEG-PKEALIDLAWHP----------VHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 313 ~~~dg~I~iwd~~-~~~~~~l~~-h~~~v~~l~~sp----------~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
|+.|+||++. ++++..+.+ |...|++++|+| ++++|++++.||.|+||++.++
T Consensus 509 ---dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 509 ---MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp ---TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ---CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999999 999998888 999999999999 9999999999999999999886
No 60
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=292.45 Aligned_cols=293 Identities=20% Similarity=0.343 Sum_probs=220.3
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-----------eeeEeeccccc------------ccEEEEEec
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG-----------IAKELRDKECV------------AAITSVCWS 76 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~-----------~~~~~~~~~h~------------~~V~~l~~s 76 (551)
..+.+.|+|++|+|+|++||+|+.||.|+||++.++. ....+.+| . ..|++++|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h--~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSH--EPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECC--CCEEEGGGTEEECCCCCEEEEC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccc--cccccccccccccCceEEEEEc
Confidence 3467999999999999999999999999999999876 46677665 6 889999999
Q ss_pred CCC--CEEEEEeCCCCEEEEEcCCCeEE---------------------------------------EEE-EcC-CCeeE
Q 008844 77 KYG--HRILVSAADKSLTLWDVLKGEKI---------------------------------------TRI-VLQ-QTPLQ 113 (551)
Q Consensus 77 ~~g--~~l~s~s~dg~i~vwd~~~~~~~---------------------------------------~~~-~~~-~~~~~ 113 (551)
|++ .+|++++.|++|++|++.++... ..+ ..| ..+..
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 79999999999999999765432 122 223 45789
Q ss_pred EEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEe
Q 008844 114 ARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGN 192 (551)
Q Consensus 114 ~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~ 192 (551)
+.|+|++. +++++ .++.+++||+.........+.... .....|...|++++|+|++ .+|++|+
T Consensus 183 ~~~~~~~~---~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~p~~~~~l~s~~ 246 (447)
T 3dw8_B 183 ISINSDYE---TYLSA-DDLRINLWHLEITDRSFNIVDIKP------------ANMEELTEVITAAEFHPNSCNTFVYSS 246 (447)
T ss_dssp EEECTTSS---EEEEE-CSSEEEEEETTEEEEEEEEEECCC------------SSGGGCCCCEEEEEECSSCTTEEEEEE
T ss_pred EEEcCCCC---EEEEe-CCCeEEEEECCCCCceeeeeeccc------------ccccccCcceEEEEECCCCCcEEEEEe
Confidence 99999754 67777 799999999985433222111100 0112344489999999999 9999999
Q ss_pred cCceEEEEECCCCcE----EEeeeccCcc------------ceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhh
Q 008844 193 SKGEILVIDHKSNQI----RALVPVSGAA------------VIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEAL 256 (551)
Q Consensus 193 ~dg~i~i~d~~~~~~----~~~~~~~~~~------------~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (551)
.||.|++||+++++. ...+. .|.. .|.+++|+|+|++|++++. +.|+|||+...
T Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~-------- 316 (447)
T 3dw8_B 247 SKGTIRLCDMRASALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME-------- 316 (447)
T ss_dssp TTSCEEEEETTTCSSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC--------
T ss_pred CCCeEEEEECcCCccccceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC--------
Confidence 999999999999886 55554 4444 8999999999999999999 99999993221
Q ss_pred hhhhccCCCCCcceeeeeccceeeeeeccccccccee----------eeeeeEEcCCCCEEEEeeccCCcceEEEEecC-
Q 008844 257 VDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM----------HWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA- 325 (551)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~- 325 (551)
..++..+..|...+..+ ....++|+|+|++|++|+. ||.|+|||+.
T Consensus 317 --------------------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~---dg~v~iwd~~~ 373 (447)
T 3dw8_B 317 --------------------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY---NNFFRMFDRNT 373 (447)
T ss_dssp --------------------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS---TTEEEEEETTT
T ss_pred --------------------ccccceeeccccccccccccccccccccceEEEECCCCCEEEEecc---CCEEEEEEcCC
Confidence 22344444443322100 0114899999999999999 9999999999
Q ss_pred CceeEEEecC---------------------------------CCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 326 GYLVKILEGP---------------------------------KEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 326 ~~~~~~l~~h---------------------------------~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
++.+ .+.+| ...|..++|+|++++||+++.++ +++|.-
T Consensus 374 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 374 KRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred Ccce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 6654 33333 34688999999999999998765 777763
No 61
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1e-33 Score=287.36 Aligned_cols=274 Identities=17% Similarity=0.310 Sum_probs=230.4
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
|...|+|+.| ++++|++|+.||.|++||+.+++....+.+| ...|.+++| ++++|++|+.||+|++||+.+++.
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGH--TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCC--SSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC--CCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 5567998877 7899999999999999999999999998765 899999999 688999999999999999999999
Q ss_pred EEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 102 ITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 102 ~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
+..+..+.. +..+.+++ ..+++++.++.+++||+.++........ ...|...+.+++
T Consensus 206 ~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----------------~~~~~~~v~~~~ 263 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN-----GMMVTCSKDRSIAVWDMASPTDITLRRV-----------------LVGHRAAVNVVD 263 (435)
T ss_dssp EEEECCCCSCEEEEECCT-----TEEEEEETTSCEEEEECSSSSCCEEEEE-----------------ECCCSSCEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC-----CEEEEeeCCCcEEEEeCCCCCCceeeeE-----------------ecCCCCcEEEEE
Confidence 998887654 66777754 2899999999999999988765422111 112333788888
Q ss_pred EeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhh
Q 008844 181 FNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIE 260 (551)
Q Consensus 181 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (551)
| ++++|++|+.||.|++||+.+++.+..+. .|...|.++.| ++.+|++++.||.|++||+
T Consensus 264 ~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~--------------- 323 (435)
T 1p22_A 264 F--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDI--------------- 323 (435)
T ss_dssp E--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSCEEEEET---------------
T ss_pred e--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC---------------
Confidence 8 78899999999999999999999988886 78899999998 4789999999999999992
Q ss_pred ccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc---------eeE
Q 008844 261 KGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY---------LVK 330 (551)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~---------~~~ 330 (551)
..+.++..+..|...+. +++| ++.+|++|+. ||.|+|||+. +. ++.
T Consensus 324 --------------~~~~~~~~~~~h~~~v~-----~~~~--~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~ 379 (435)
T 1p22_A 324 --------------ECGACLRVLEGHEELVR-----CIRF--DNKRIVSGAY---DGKIKVWDLVAALDPRAPAGTLCLR 379 (435)
T ss_dssp --------------TTCCEEEEECCCSSCEE-----EEEC--CSSEEEEEET---TSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred --------------CCCCEEEEEeCCcCcEE-----EEEe--cCCEEEEEeC---CCcEEEEECCCCCCccccccchhee
Confidence 22556777888888887 6666 7899999999 9999999998 54 788
Q ss_pred EEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 331 ILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 331 ~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
.+.+|...|.+++| ++.+|++++.||.|+||++....
T Consensus 380 ~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 380 TLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred eccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 99999999999999 78899999999999999998754
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.3e-34 Score=325.36 Aligned_cols=291 Identities=14% Similarity=0.161 Sum_probs=249.7
Q ss_pred eeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 16 VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 16 ~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
.+....|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+| ...|++++|+|++++|++++.|++|+|||
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH--EDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccC--CCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 3334458899999999999999999999999999999999999998765 99999999999999999999999999999
Q ss_pred cCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
+.+++.+..+..+. .+.++.|+|++. ..++++++.++.+++||+.++....... .|..
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~--------------------~h~~ 744 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSN-HLLLATGSNDFFLKLWDLNQKECRNTMF--------------------GHTN 744 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSS-CCEEEEEETTSCEEEEETTSSSEEEEEC--------------------CCSS
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCC-ceEEEEEeCCCeEEEEECCCcchhheec--------------------CCCC
Confidence 99999999998776 477889998643 5588999999999999999887654321 2334
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc------------CccceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS------------GAAVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~------------~~~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
.|++++|+|++++|++|+.||.|++||+.++.....+... ....+.+++|+|+|+++++++ ++.+.+
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~ 823 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLL 823 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEE
Confidence 8999999999999999999999999999998876665321 134788999999999999886 789999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee-ecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL-FREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYI 321 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~i 321 (551)
|++.. ...+.. ...|...+. +++|+|+++++++++. ++.|++
T Consensus 824 ~d~~~-----------------------------~~~~~~~~~~~~~~v~-----~~~~sp~~~~l~~~~~---dg~v~v 866 (1249)
T 3sfz_A 824 FDIHT-----------------------------SGLLAEIHTGHHSTIQ-----YCDFSPYDHLAVIALS---QYCVEL 866 (1249)
T ss_dssp EETTT-----------------------------CCEEEEEECSSSSCCC-----EEEECSSTTEEEEECS---SSCEEE
T ss_pred EEecC-----------------------------CCceeEEcCCCCCceE-----EEEEcCCCCEEEEEeC---CCeEEE
Confidence 99321 222322 336667776 8999999999999999 999999
Q ss_pred EecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 322 WDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 322 wd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
|++. +..+..+.+|...|.+++|+|++.+|++++.||.|++|++..
T Consensus 867 wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 9999 999999999999999999999999999999999999999753
No 63
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-34 Score=285.75 Aligned_cols=286 Identities=16% Similarity=0.218 Sum_probs=233.1
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCC
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTP 123 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~ 123 (551)
..+.+|+..+..+.+++.+| ...|++++|+|++++|++|+.|++|+|||+.++..+..+..+.. +..+.|+|++.
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH--~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~-- 121 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGH--SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ-- 121 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS--
T ss_pred ccccccccceeEEeeccccc--ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC--
Confidence 34556777777788888766 99999999999999999999999999999999999999988764 77889999864
Q ss_pred cEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEEC
Q 008844 124 SLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDH 202 (551)
Q Consensus 124 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~ 202 (551)
++++++.++.+++|++......... .........|...+.++.|.|++ ..|++|+.|++|++||+
T Consensus 122 -~las~~~d~~v~iw~~~~~~~~~~~-------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~ 187 (380)
T 3iz6_a 122 -SVACGGLDSACSIFNLSSQADRDGN-------------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV 187 (380)
T ss_dssp -EEEECCSSSCCEEEECCCCSSCCCS-------------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred -EEEEeeCCCcEEEEECCCCccccCC-------------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence 8999999999999999764321100 00111233455688899999975 67999999999999999
Q ss_pred CCCcEEEeee----ccCccceEEEEEee-CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccc
Q 008844 203 KSNQIRALVP----VSGAAVIKNIVFSR-NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGS 277 (551)
Q Consensus 203 ~~~~~~~~~~----~~~~~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (551)
.+++.+..+. ..|...|.+++|++ ++.+|++|+.|++|++||+... .
T Consensus 188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~----------------------------~ 239 (380)
T 3iz6_a 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT----------------------------S 239 (380)
T ss_dssp TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT----------------------------C
T ss_pred CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC----------------------------C
Confidence 9999877662 36888999999987 7899999999999999993211 3
Q ss_pred eeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCC-------ceEEEEEecCCC
Q 008844 278 KCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKE-------ALIDLAWHPVHP 349 (551)
Q Consensus 278 ~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~-------~v~~l~~sp~~~ 349 (551)
.++..+.+|...|. +++|+|+|++|++|+. |+.|+|||+. +..+..+..+.. .|++++|+|++.
T Consensus 240 ~~~~~~~~h~~~v~-----~v~~~p~~~~l~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 240 RAVRTYHGHEGDIN-----SVKFFPDGQRFGTGSD---DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp CCCEEECCCSSCCC-----EEEECTTSSEEEEECS---SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred cceEEECCcCCCeE-----EEEEecCCCeEEEEcC---CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence 44667788998888 8999999999999999 9999999999 888888765432 489999999999
Q ss_pred eEEEEcCCCcEEEEecCCCCcc----------------eeecCCcceecee
Q 008844 350 IIVSVSLTGWVYIWAKDYTENW----------------SAFAPDFKELEEN 384 (551)
Q Consensus 350 ~l~s~s~dg~i~iW~~~~~~~~----------------~~~spd~~~l~~~ 384 (551)
+|++++.||.|+|||+...+.. .+|+|++..|+..
T Consensus 312 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence 9999999999999998655421 2677887776643
No 64
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-33 Score=278.69 Aligned_cols=260 Identities=18% Similarity=0.272 Sum_probs=219.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC------ceeeEeecccccccEEEEEe
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR------GIAKELRDKECVAAITSVCW 75 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~------~~~~~~~~~~h~~~V~~l~~ 75 (551)
.|+|||..++.....+.. |...|.+++|+|+|.+||+|+.|+.|++|++... .....+.+ |...|.+++|
T Consensus 87 ~v~vWd~~~~~~~~~~~~--~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~ 162 (354)
T 2pbi_B 87 KVIVWDSFTTNKEHAVTM--PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM--HTNYLSACSF 162 (354)
T ss_dssp EEEEEETTTCCEEEEEEC--SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE--CSSCEEEEEE
T ss_pred eEEEEECCCCCcceEEec--CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeec--cCCcEEEEEE
Confidence 478999998877666654 7788999999999999999999999999998643 23445554 4899999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCC
Q 008844 76 SKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 76 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
+|++.+|++++.|++|++||+.+++++..+..|. .+..+.++|... ..++++++.|+.+++||++++......
T Consensus 163 ~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-g~~l~sgs~Dg~v~~wd~~~~~~~~~~----- 236 (354)
T 2pbi_B 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET-GNTFVSGGCDKKAMVWDMRSGQCVQAF----- 236 (354)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS-CCEEEEEETTSCEEEEETTTCCEEEEE-----
T ss_pred eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC-CCEEEEEeCCCeEEEEECCCCcEEEEe-----
Confidence 9999999999999999999999999999998776 467788887532 358999999999999999998765432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEeeCCCEEEE
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSRNGQYLLT 233 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~t 233 (551)
..|...|++++|+|++.+|++|+.||+|++||+++++.+..+.. .+...+.+++|+|++++|++
T Consensus 237 ---------------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 237 ---------------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp ---------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred ---------------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 12334899999999999999999999999999999887766632 22357899999999999999
Q ss_pred eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeecc
Q 008844 234 NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS 313 (551)
Q Consensus 234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~ 313 (551)
++.|++|++||+. ....+..+.+|...|. +++|+|+|++|++|+.
T Consensus 302 g~~d~~i~vwd~~-----------------------------~~~~~~~l~~h~~~v~-----~l~~spdg~~l~sgs~- 346 (354)
T 2pbi_B 302 GYNDYTINVWDVL-----------------------------KGSRVSILFGHENRVS-----TLRVSPDGTAFCSGSW- 346 (354)
T ss_dssp EETTSCEEEEETT-----------------------------TCSEEEEECCCSSCEE-----EEEECTTSSCEEEEET-
T ss_pred EECCCcEEEEECC-----------------------------CCceEEEEECCCCcEE-----EEEECCCCCEEEEEcC-
Confidence 9999999999932 2445667788988887 8999999999999999
Q ss_pred CCcceEEEEe
Q 008844 314 KGEHKIYIWD 323 (551)
Q Consensus 314 ~~dg~I~iwd 323 (551)
|+.|+||+
T Consensus 347 --D~~v~vW~ 354 (354)
T 2pbi_B 347 --DHTLRVWA 354 (354)
T ss_dssp --TSEEEEEC
T ss_pred --CCCEEecC
Confidence 99999996
No 65
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-33 Score=274.65 Aligned_cols=261 Identities=14% Similarity=0.171 Sum_probs=207.6
Q ss_pred CccccccCCCCc--cceeec-ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 2 NAPIIDPLQGDF--PEVIEE-YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 2 nl~lwd~~~~~~--~~~l~~-~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
.|++|+...... ...+.. ..|...|.+++|+|+|++|++|+.|++|+|||+.+++.+..+.+| ...|.+++|+|+
T Consensus 41 ~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~ 118 (319)
T 3frx_A 41 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH--KSDVMSVDIDKK 118 (319)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECTT
T ss_pred cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC--CCcEEEEEEcCC
Confidence 367898764322 111222 237899999999999999999999999999999999999999876 899999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCC---CCcEEEEeeCCCCcEEEEcCCCceeeeccccCC
Q 008844 79 GHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSS---TPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~---~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
+.+|++++.|++|++||+. +.++..+..+. .+..+.+.|... ....+++++.++.+++||+.+.......
T Consensus 119 ~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----- 192 (319)
T 3frx_A 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF----- 192 (319)
T ss_dssp SCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-----
T ss_pred CCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-----
Confidence 9999999999999999986 55666666554 477888988643 3458999999999999999887654321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~ 234 (551)
..|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+...|.+++|+|++.+|+++
T Consensus 193 ---------------~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 193 ---------------IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL--SAQDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp ---------------CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE--ECCSCEEEEEECSSSSEEEEE
T ss_pred ---------------cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCcEEEEEEcCCCCEEEEE
Confidence 123448999999999999999999999999999999998888 456789999999999999888
Q ss_pred eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee--------cccccccceeeeeeeEEcCCCCE
Q 008844 235 SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF--------REFQDSITKMHWKAPCFSGDGEW 306 (551)
Q Consensus 235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~s~dg~~ 306 (551)
+. +.+++|++.. ...+..+ ..+...+. +++|+|+|++
T Consensus 256 ~~-~~i~v~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~v~-----~~~~spdg~~ 300 (319)
T 3frx_A 256 TA-TGIKVFSLDP-----------------------------QYLVDDLRPEFAGYSKAAEPHAV-----SLAWSADGQT 300 (319)
T ss_dssp ET-TEEEEEEETT-----------------------------EEEEEEECCCCTTCCGGGCCCEE-----EEEECTTSSE
T ss_pred cC-CCcEEEEeCc-----------------------------CeeeeccCccccccccCcCccee-----EEEECCCCCE
Confidence 65 5599998211 1111111 12233343 8999999999
Q ss_pred EEEeeccCCcceEEEEecC
Q 008844 307 VIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 307 l~~gs~~~~dg~I~iwd~~ 325 (551)
|++|+. |+.|+||++.
T Consensus 301 l~sg~~---Dg~i~vWd~~ 316 (319)
T 3frx_A 301 LFAGYT---DNVIRVWQVM 316 (319)
T ss_dssp EEEEET---TSCEEEEEEE
T ss_pred EEEeec---CceEEEEEEe
Confidence 999999 9999999975
No 66
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-34 Score=282.38 Aligned_cols=258 Identities=15% Similarity=0.277 Sum_probs=210.4
Q ss_pred cceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEecc--CCceeeEeecccccccEEEEEecCC--CCEEEEEeCCC
Q 008844 14 PEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFE--TRGIAKELRDKECVAAITSVCWSKY--GHRILVSAADK 89 (551)
Q Consensus 14 ~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~--~~~~~~~~~~~~h~~~V~~l~~s~~--g~~l~s~s~dg 89 (551)
...+.. |.+.|++++|+|++++||+|+.||.|+||++. ++..+..+.+| ...|++++|+++ +++|++++.|+
T Consensus 4 ~~~~~~--h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 4 VVIANA--HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp -CCEEE--CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEecC--CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC--CCcEEEEEeCCCCCCCEEEEeccCC
Confidence 344444 88999999999999999999999999999998 55666677655 999999999987 99999999999
Q ss_pred CEEEEEcCCCe--EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCC
Q 008844 90 SLTLWDVLKGE--KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKY 167 (551)
Q Consensus 90 ~i~vwd~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (551)
.|++||+.++. .+..+..+.
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~~---------------------------------------------------------- 101 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVHS---------------------------------------------------------- 101 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCS----------------------------------------------------------
T ss_pred EEEEEEcCCCceeEeeeecCCC----------------------------------------------------------
Confidence 99999999886 333222211
Q ss_pred CCCCCCCCceEEEEeeC--CCEEEEEecCceEEEEECCCCcE--EEeeeccCccceEEEEEee-------------CCCE
Q 008844 168 SDGTPPFTPTAACFNKY--GDLVYVGNSKGEILVIDHKSNQI--RALVPVSGAAVIKNIVFSR-------------NGQY 230 (551)
Q Consensus 168 ~~~~~~~~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~s~-------------~g~~ 230 (551)
..|.+++|+|+ +.+|++++.+|.|++||+.+... ...+. .|...|.+++|+| ++.+
T Consensus 102 ------~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 102 ------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp ------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCCC----------CTTCE
T ss_pred ------cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCccccccccccCCCCCCE
Confidence 17899999999 99999999999999999998743 22332 7889999999999 6999
Q ss_pred EEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC---CCEE
Q 008844 231 LLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD---GEWV 307 (551)
Q Consensus 231 l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d---g~~l 307 (551)
|++++.|+.|++||+.... ........+..|...|. +++|+|+ +++|
T Consensus 175 l~~~~~dg~i~i~d~~~~~-------------------------~~~~~~~~~~~h~~~v~-----~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 175 FVTGGADNLVKIWKYNSDA-------------------------QTYVLESTLEGHSDWVR-----DVAWSPTVLLRSYL 224 (379)
T ss_dssp EEEEETTSCEEEEEEETTT-------------------------TEEEEEEEECCCSSCEE-----EEEECCCCSSSEEE
T ss_pred EEEEeCCCeEEEEEecCCC-------------------------cceeeEEEEecccCcEe-----EEEECCCCCCCCeE
Confidence 9999999999999932210 00223456677888777 8999999 8999
Q ss_pred EEeeccCCcceEEEEecC-Cc---eeEEEe--cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCccee
Q 008844 308 IAGSASKGEHKIYIWDRA-GY---LVKILE--GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSA 373 (551)
Q Consensus 308 ~~gs~~~~dg~I~iwd~~-~~---~~~~l~--~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~ 373 (551)
++++. ||.|+||++. +. ....+. .|...|.+++|+|++++|++++.||.|+||++.....|..
T Consensus 225 ~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 293 (379)
T 3jrp_A 225 ASVSQ---DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 293 (379)
T ss_dssp EEEET---TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEE
T ss_pred EEEeC---CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccc
Confidence 99999 9999999998 43 222232 3788999999999999999999999999999997766653
No 67
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.4e-34 Score=288.58 Aligned_cols=280 Identities=13% Similarity=0.116 Sum_probs=226.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
+++++|+|+|++|++|+.||.|++||+.++.....+..+ ..+....|++++++|++++.|+.|++||+.++.....+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA---DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC---CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC---CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 457899999999999999999999999988776666543 44556678999999999999999999999999887776
Q ss_pred EcC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC
Q 008844 106 VLQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184 (551)
Q Consensus 106 ~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 184 (551)
..+ ..+.++.|+|++. ++++++.++.+++||+.++...... ..|...|.+++|+|+
T Consensus 136 ~~h~~~v~~~~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~--------------------~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE---ALISSSQDMQLKIWSVKDGSNPRTL--------------------IGHRATVTDIAIIDR 192 (420)
T ss_dssp TSSSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTCCCCEEE--------------------ECCSSCEEEEEEETT
T ss_pred ccccCccEEEEECCCCC---EEEEEeCCCeEEEEeCCCCcCceEE--------------------cCCCCcEEEEEEcCC
Confidence 554 4688999999754 8999999999999999987654322 123448999999999
Q ss_pred CCEEEEEecCceEEEEECCCCcEEEeeec--cCccceEEEE---------------------EeeCCCEEEEeeCCCeEE
Q 008844 185 GDLVYVGNSKGEILVIDHKSNQIRALVPV--SGAAVIKNIV---------------------FSRNGQYLLTNSNDRTIR 241 (551)
Q Consensus 185 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~l~---------------------~s~~g~~l~t~s~Dg~i~ 241 (551)
+++|++|+.||.|++||+++++.+..+.. .+...|.+++ |+|++++|++++.||.|+
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 99999999999999999999998877753 2344455544 568899999999999999
Q ss_pred EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCC-EEEEeeccCCcceEE
Q 008844 242 IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGE-WVIAGSASKGEHKIY 320 (551)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~-~l~~gs~~~~dg~I~ 320 (551)
+||+... .........|...+. +++|+|++. +|++|+. +|.|+
T Consensus 273 i~d~~~~----------------------------~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~g~~---dg~i~ 316 (420)
T 3vl1_A 273 VHNVFSK----------------------------EQTIQLPSKFTCSCN-----SLTVDGNNANYIYAGYE---NGMLA 316 (420)
T ss_dssp EEETTTC----------------------------CEEEEECCTTSSCEE-----EEEECSSCTTEEEEEET---TSEEE
T ss_pred EEECCCC----------------------------ceeEEcccccCCCce-----eEEEeCCCCCEEEEEeC---CCeEE
Confidence 9993221 112223334666676 899999999 9999999 99999
Q ss_pred EEecC-C-ceeEEEec-CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 321 IWDRA-G-YLVKILEG-PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 321 iwd~~-~-~~~~~l~~-h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
+||+. + .++..+.+ |...|.++.| +++.+|++++.||.|++|++...
T Consensus 317 vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 317 QWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred EEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 99999 5 45777777 5667777755 57889999999999999999874
No 68
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=277.55 Aligned_cols=285 Identities=13% Similarity=0.179 Sum_probs=227.0
Q ss_pred cccceEEEEEEcCC---CCEEEEEeCCCeEEEEeccC-Ccee-eEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 21 LEHGVMKCIAFNRR---GTLLAAGCSDGSCVIWDFET-RGIA-KELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 21 ~h~~~V~~l~fs~d---g~~latg~~dg~I~iwd~~~-~~~~-~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
.|.+.|+|++|+|+ |++||+|+.||.|+||++.+ +..+ ..+.+| ...|++++|+|++++|++++.|+.|++||
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH--TGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc--cCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 37899999999999 69999999999999999997 4444 556554 99999999999999999999999999999
Q ss_pred cCCCeEEEEEEcCCCeeEEEE--ecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 96 VLKGEKITRIVLQQTPLQARL--HPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
+.++..+........+..+.| +|+ ..++++++.++.+++||+.++.........
T Consensus 115 ~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------------- 170 (368)
T 3mmy_A 115 LSSNQAIQIAQHDAPVKTIHWIKAPN---YSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--------------------- 170 (368)
T ss_dssp TTTTEEEEEEECSSCEEEEEEEECSS---CEEEEEEETTSEEEEECSSCSSCSEEEECS---------------------
T ss_pred cCCCCceeeccccCceEEEEEEeCCC---CCEEEEccCCCcEEEEECCCCcEEEEEecC---------------------
Confidence 999998887777778999999 554 347999999999999999987654322110
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEE-EeeeccCccceEEEEEeeCCCE----EEEeeCCCeEEEEeCcCC
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIR-ALVPVSGAAVIKNIVFSRNGQY----LLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~----l~t~s~Dg~i~iwd~~~~ 248 (551)
..+.++.+ .+..+++++.++.+.+|++...... ......+...+.++.+.++... |++++.||.|++|++...
T Consensus 171 ~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 171 ERCYCADV--IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp SCEEEEEE--ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred CCceEEEe--cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 03444444 4568999999999999999887653 3333345567778888777665 999999999999993321
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc------------ccceeeeeeeEEcCCCCEEEEeeccCCc
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD------------SITKMHWKAPCFSGDGEWVIAGSASKGE 316 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~s~dg~~l~~gs~~~~d 316 (551)
.. ...+..+..|.. .+. +++|+|++++|++++. |
T Consensus 249 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~sp~~~~l~s~~~---d 294 (368)
T 3mmy_A 249 NP--------------------------AKDNFTFKCHRSNGTNTSAPQDIYAVN-----GIAFHPVHGTLATVGS---D 294 (368)
T ss_dssp CH--------------------------HHHSEEEECSEEC----CCCEEECCEE-----EEEECTTTCCEEEEET---T
T ss_pred Cc--------------------------cccceeeeeeecccccccccccccceE-----EEEEecCCCEEEEEcc---C
Confidence 10 012233333332 454 8999999999999999 9
Q ss_pred ceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 317 HKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 317 g~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
|.|+|||+. ++++..+.+|..+|.+++|+|++++|++++.|+..+.|++-.
T Consensus 295 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 295 GRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred CeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 999999999 999999999999999999999999999999988666665543
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.1e-32 Score=280.15 Aligned_cols=301 Identities=13% Similarity=0.121 Sum_probs=237.0
Q ss_pred ccce-EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 22 EHGV-MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 22 h~~~-V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
|... +.|+.| ++++|++|+.||+|++||+.+++.+..+.+| ...|++++|+|++ +|++|+.|++|++||+.+++
T Consensus 120 h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 120 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp CSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred CCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence 6655 577777 5679999999999999999999999998765 9999999999988 99999999999999999999
Q ss_pred EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC---CCCCCCCCCCCCCc
Q 008844 101 KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS---SRNKYSDGTPPFTP 176 (551)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i 176 (551)
.+..+..+. .+.++.+++.. ...++++++.++.+++||+.++................... .........|...+
T Consensus 195 ~~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 195 CTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp EEEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred EEEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 999988664 57788888642 24589999999999999998876432211100000000000 00000112233344
Q ss_pred eEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhh
Q 008844 177 TAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEAL 256 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (551)
.+ ++++++++++|+.||.|++||+.+++.+..+. .|...|.+++|+|++++|++++.||.|++||+
T Consensus 274 ~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~----------- 339 (464)
T 3v7d_B 274 RT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDL----------- 339 (464)
T ss_dssp EE--EEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEET-----------
T ss_pred EE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-----------
Confidence 44 47889999999999999999999999988886 78999999999999999999999999999992
Q ss_pred hhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecC
Q 008844 257 VDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGP 335 (551)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h 335 (551)
..+.++..+..|...+. +++|+ +.+|++++. ||.|++||+. +.....+. |
T Consensus 340 ------------------~~~~~~~~~~~h~~~v~-----~~~~~--~~~l~s~s~---dg~v~vwd~~~~~~~~~~~-~ 390 (464)
T 3v7d_B 340 ------------------ENGELMYTLQGHTALVG-----LLRLS--DKFLVSAAA---DGSIRGWDANDYSRKFSYH-H 390 (464)
T ss_dssp ------------------TTTEEEEEECCCSSCEE-----EEEEC--SSEEEEEET---TSEEEEEETTTCCEEEEEE-C
T ss_pred ------------------CCCcEEEEEeCCCCcEE-----EEEEc--CCEEEEEeC---CCcEEEEECCCCceeeeec-C
Confidence 22566778888888887 67776 689999999 9999999999 66555553 6
Q ss_pred CCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 336 KEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 336 ~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
...+..++|+|++.+|++++ ||.|+||++.+++...
T Consensus 391 ~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 391 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 77888999999999999999 9999999999876543
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-33 Score=305.72 Aligned_cols=317 Identities=13% Similarity=0.101 Sum_probs=255.7
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.|.|||..++.....+.. |.+.|++++|+|+|++||+|+.||.|+||++.+++.+..+.+| ...|++++|+|++++
T Consensus 36 ~v~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~ 111 (814)
T 3mkq_A 36 RVEIWNYETQVEVRSIQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH--PDYIRSIAVHPTKPY 111 (814)
T ss_dssp EEEEEETTTTEEEEEEEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECSSSSE
T ss_pred EEEEEECCCCceEEEEec--CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC--CCCEEEEEEeCCCCE
Confidence 378999998877776664 8899999999999999999999999999999999999998765 899999999999999
Q ss_pred EEEEeCCCCEEEEEcCCC-eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKG-EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
|++++.|++|++||+.++ .....+..+. .+.++.|+|.. ...+++++.++.+++||+..+........
T Consensus 112 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-------- 181 (814)
T 3mkq_A 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD--PSTFASGCLDRTVKVWSLGQSTPNFTLTT-------- 181 (814)
T ss_dssp EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE--EEEEEEEETTSEEEEEETTCSSCSEEEEC--------
T ss_pred EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcceeEEec--------
Confidence 999999999999999987 6666666654 58899999932 33899999999999999987664432221
Q ss_pred CCCCCCCCCCCCCCCCceEEEEee--CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNK--YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
.+...+.+++|+| ++.+|++|+.+|.|++||+.+++.+..+. .|...|.+++|+|++.+|++++.|
T Consensus 182 -----------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 249 (814)
T 3mkq_A 182 -----------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSED 249 (814)
T ss_dssp -----------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETT
T ss_pred -----------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCC
Confidence 1123789999999 99999999999999999999999888876 788999999999999999999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCC--EEEEeeccCC
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGE--WVIAGSASKG 315 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~--~l~~gs~~~~ 315 (551)
|.|++||+. ....+..+..+...+. +++|+|+|. +++++.
T Consensus 250 g~v~vwd~~-----------------------------~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~---- 291 (814)
T 3mkq_A 250 GTLKIWNSS-----------------------------TYKVEKTLNVGLERSW-----CIATHPTGRKNYIASGF---- 291 (814)
T ss_dssp SCEEEEETT-----------------------------TCSEEEEECCSSSSEE-----EEEECTTCGGGEEEEEE----
T ss_pred CeEEEEECC-----------------------------CCcEEEEeecCCCcEE-----EEEEccCCCceEEEEEe----
Confidence 999999922 2344555666666666 888999887 455555
Q ss_pred cceEEEEecC-Ccee-------------------------------------------EEEecCCCceEEEEEecCCCeE
Q 008844 316 EHKIYIWDRA-GYLV-------------------------------------------KILEGPKEALIDLAWHPVHPII 351 (551)
Q Consensus 316 dg~I~iwd~~-~~~~-------------------------------------------~~l~~h~~~v~~l~~sp~~~~l 351 (551)
++.+.+|++. +... ..+..+...+.+++|+|++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 371 (814)
T 3mkq_A 292 DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFV 371 (814)
T ss_dssp TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEE
T ss_pred CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEE
Confidence 4667777764 2211 1122344568899999999999
Q ss_pred EEEcCCCcEEEEecCCCCc-------ceeecCCcceece
Q 008844 352 VSVSLTGWVYIWAKDYTEN-------WSAFAPDFKELEE 383 (551)
Q Consensus 352 ~s~s~dg~i~iW~~~~~~~-------~~~~spd~~~l~~ 383 (551)
++++ +|.+.+|++..... -.+|+|++..++.
T Consensus 372 a~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 372 TVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEE
T ss_pred EEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEE
Confidence 9998 89999999865422 1378899887763
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1e-33 Score=277.39 Aligned_cols=281 Identities=11% Similarity=0.019 Sum_probs=225.7
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---eeeEeecccccccEEEEEecCCCC-EEEEEeCCCCEEEEEc
Q 008844 21 LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG---IAKELRDKECVAAITSVCWSKYGH-RILVSAADKSLTLWDV 96 (551)
Q Consensus 21 ~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~---~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~s~dg~i~vwd~ 96 (551)
.|.+.|++++|+|++++|++|+.||.|+||++.++. ....+.. |...|++++|+|+++ +|++++.|+.|++||+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR--YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE--CSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee--cCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 378999999999999999999999999999999877 2334443 589999999999999 9999999999999999
Q ss_pred -CCCeEEEEEEc---CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC---------CceeeeccccCCCCCCCCCCC
Q 008844 97 -LKGEKITRIVL---QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST---------GSTSILPIAVPDVANGIAPSS 163 (551)
Q Consensus 97 -~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~ 163 (551)
.++.. ..+.. ...+..+.|+| + ..+++++.++.+++||+.+ +.....
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--------------- 146 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-D---DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--------------- 146 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-T---TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS---------------
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-C---CEEEEEcCCCeEEEEcccccccccccccCCeeeE---------------
Confidence 88766 44443 44678999998 3 3899999999999999875 322110
Q ss_pred CCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCC-CcE-EEeeeccCccceEEEEEee-CCCEEEEeeCCCeE
Q 008844 164 RNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKS-NQI-RALVPVSGAAVIKNIVFSR-NGQYLLTNSNDRTI 240 (551)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~-~~~-~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg~i 240 (551)
..+...+.+++|++++ +++++.+|.|++||+++ +.. .......|...|.+++|+| ++++|++++.||.|
T Consensus 147 ------~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 147 ------TKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp ------SSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred ------EeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence 0133489999999887 99999999999999998 553 2333337788999999999 99999999999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc---------ccceeeeeeeEEcCCCCEEEEee
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD---------SITKMHWKAPCFSGDGEWVIAGS 311 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~s~dg~~l~~gs 311 (551)
++|++...... ........+..|.. .+. +++|+|++++|++++
T Consensus 219 ~i~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 219 AVEFFDDQGDD-----------------------YNSSKRFAFRCHRLNLKDTNLAYPVN-----SIEFSPRHKFLYTAG 270 (342)
T ss_dssp EEEECCTTCCS-----------------------TTCTTCEEEECCCCCTTCCSSCCCEE-----EEEECTTTCCEEEEE
T ss_pred EEEEEcCCCcc-----------------------cccccceeeecccccccccccceeEE-----EEEEcCCCCEEEEec
Confidence 99993221000 00122334444433 555 899999999999999
Q ss_pred ccCCcceEEEEecC-CceeEEEecC-CCceEEEEEecCCCeEEEEcCCCc-EEEEe
Q 008844 312 ASKGEHKIYIWDRA-GYLVKILEGP-KEALIDLAWHPVHPIIVSVSLTGW-VYIWA 364 (551)
Q Consensus 312 ~~~~dg~I~iwd~~-~~~~~~l~~h-~~~v~~l~~sp~~~~l~s~s~dg~-i~iW~ 364 (551)
. +|.|++||+. ++++..+.+| ..+|.+++ |++.+|++++.||. .+.|.
T Consensus 271 ~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 271 S---DGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp T---TSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred C---CceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9 9999999999 9999999998 99999999 99999999999998 55544
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-32 Score=279.74 Aligned_cols=289 Identities=15% Similarity=0.239 Sum_probs=242.8
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.|+|||..+++....+.. |.+.|.+++|+ +++|++|+.||+|++||+.+++.+..+.+| ...|.+++|+ +.+
T Consensus 140 ~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~ 211 (445)
T 2ovr_B 140 TLKVWSAVTGKCLRTLVG--HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGH--TSTVRCMHLH--EKR 211 (445)
T ss_dssp CEEEEETTTCCEEEECCC--CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEE--TTE
T ss_pred cEEEEECCCCcEEEEEcC--CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCC--CCcEEEEEec--CCE
Confidence 478999999887666654 88999999997 679999999999999999999999888765 8999999996 578
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
|++++.|++|++||+.+++.+..+..+.. +.++.+ + ...+++++.++.+++||+.++.......
T Consensus 212 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------- 276 (445)
T 2ovr_B 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D---GRRVVSGAYDFMVKVWDPETETCLHTLQ---------- 276 (445)
T ss_dssp EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C---SSCEEEEETTSCEEEEEGGGTEEEEEEC----------
T ss_pred EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C---CCEEEEEcCCCEEEEEECCCCcEeEEec----------
Confidence 99999999999999999999998887654 556666 2 3378999999999999998876543321
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
.|...+.+++| ++.++++|+.||.|++||+.+++.+..+. .|...+.++.+ ++.+|++++.||.|
T Consensus 277 ----------~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i 341 (445)
T 2ovr_B 277 ----------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADSTV 341 (445)
T ss_dssp ----------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSCE
T ss_pred ----------CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCeE
Confidence 22337888888 78899999999999999999999988876 78888888777 46799999999999
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc---cccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE---FQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
++||+. ...++..+.. |...+. +++|+ +++|++|+. ||
T Consensus 342 ~vwd~~-----------------------------~~~~~~~~~~~~~~~~~v~-----~~~~~--~~~l~s~~~---dg 382 (445)
T 2ovr_B 342 KIWDIK-----------------------------TGQCLQTLQGPNKHQSAVT-----CLQFN--KNFVITSSD---DG 382 (445)
T ss_dssp EEEETT-----------------------------TCCEEEEECSTTSCSSCEE-----EEEEC--SSEEEEEET---TS
T ss_pred EEEECC-----------------------------CCcEEEEEccCCCCCCCEE-----EEEEC--CCEEEEEeC---CC
Confidence 999932 1334445544 666666 66774 689999999 99
Q ss_pred eEEEEecC-CceeEEE-----ecCCCceEEEEEecCCCeEEEEcCCCc----EEEEecCC
Q 008844 318 KIYIWDRA-GYLVKIL-----EGPKEALIDLAWHPVHPIIVSVSLTGW----VYIWAKDY 367 (551)
Q Consensus 318 ~I~iwd~~-~~~~~~l-----~~h~~~v~~l~~sp~~~~l~s~s~dg~----i~iW~~~~ 367 (551)
.|+|||+. ++.+..+ .+|.+.|.+++|+|++.+|++++.||+ |.|||+..
T Consensus 383 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999 9888888 468889999999999999999999998 99999875
No 73
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5e-33 Score=269.16 Aligned_cols=262 Identities=15% Similarity=0.235 Sum_probs=219.9
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.++||+..+++....+.. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+| ...|.+++|+|++++
T Consensus 46 ~i~iw~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 46 LIKIWGAYDGKFEKTISG--HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNL 121 (312)
T ss_dssp CEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECSSSSE
T ss_pred eEEEEeCCCcccchhhcc--CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCE
Confidence 478999998887776654 8899999999999999999999999999999999999998766 899999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
|++++.|++|++||+.+++.+..+..+. .+..+.|+|++. ++++++.++.+++||+.++........
T Consensus 122 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~--------- 189 (312)
T 4ery_A 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---LIVSSSYDGLCRIWDTASGQCLKTLID--------- 189 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTCCEEEEECC---------
T ss_pred EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeEEec---------
Confidence 9999999999999999999998887765 577899998754 899999999999999998875433211
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceE--EEEEe-eCCCEEEEeeCC
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIK--NIVFS-RNGQYLLTNSND 237 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~--~l~~s-~~g~~l~t~s~D 237 (551)
.+...+.+++|+|++++|++++.||.|++||+.+++.+..+. .|...+. ...++ +++.+|++++.|
T Consensus 190 ----------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 190 ----------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp ----------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred ----------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCC
Confidence 112278899999999999999999999999999999887775 4443322 22333 678899999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
|.|++||+. ....+..+.+|...+. +++|+|++.+|++++.+. |+
T Consensus 259 g~i~vwd~~-----------------------------~~~~~~~~~~h~~~v~-----~~~~~p~~~~l~s~~~~~-d~ 303 (312)
T 4ery_A 259 NLVYIWNLQ-----------------------------TKEIVQKLQGHTDVVI-----STACHPTENIIASAALEN-DK 303 (312)
T ss_dssp SCEEEEETT-----------------------------TCCEEEEECCCSSCEE-----EEEECSSSSEEEEEECTT-TC
T ss_pred CEEEEEECC-----------------------------CchhhhhhhccCCcEE-----EEeecCcCCceEEEEccC-Cc
Confidence 999999922 2455677888888887 889999999999987322 89
Q ss_pred eEEEEecC
Q 008844 318 KIYIWDRA 325 (551)
Q Consensus 318 ~I~iwd~~ 325 (551)
.|++|+..
T Consensus 304 ~i~~W~~d 311 (312)
T 4ery_A 304 TIKLWKSD 311 (312)
T ss_dssp CEEEEECC
T ss_pred cEEEecCC
Confidence 99999863
No 74
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=274.01 Aligned_cols=278 Identities=13% Similarity=0.150 Sum_probs=209.5
Q ss_pred CccccccCCCCccce-eecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--eeeEeecccccccEEEEEecCC
Q 008844 2 NAPIIDPLQGDFPEV-IEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG--IAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 2 nl~lwd~~~~~~~~~-l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
.|+|||..++..... .....|...|.+++|+|+|++||+|+.|++|+||++.++. .+..+.+ |...|.+++|+|+
T Consensus 39 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~--h~~~v~~v~~sp~ 116 (345)
T 3fm0_A 39 RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG--HENEVKSVAWAPS 116 (345)
T ss_dssp CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECC--CSSCEEEEEECTT
T ss_pred eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccC--CCCCceEEEEeCC
Confidence 478999887754322 2223488999999999999999999999999999998764 4556655 4999999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCe---EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCC
Q 008844 79 GHRILVSAADKSLTLWDVLKGE---KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
+++|++++.|++|++||+.++. ++..+..+. .+..+.|+|++. ++++++.++.+++|++..+.......
T Consensus 117 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~---~l~s~s~d~~i~~w~~~~~~~~~~~~---- 189 (345)
T 3fm0_A 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---LLASASYDDTVKLYREEEDDWVCCAT---- 189 (345)
T ss_dssp SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS---CEEEEETTSCEEEEEEETTEEEEEEE----
T ss_pred CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC---EEEEEeCCCcEEEEEecCCCEEEEEE----
Confidence 9999999999999999998764 344555554 578899999864 79999999999999998775432111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC---------------cEEEeeeccCccce
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN---------------QIRALVPVSGAAVI 219 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~---------------~~~~~~~~~~~~~i 219 (551)
...|...|++++|+|+|++|++|+.||+|+||+.... .++..+...|...|
T Consensus 190 --------------~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 190 --------------LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp --------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred --------------ecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence 1123448999999999999999999999999996321 23344443488899
Q ss_pred EEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeE
Q 008844 220 KNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 299 (551)
.+++|+|++..|++++.|+.|++|+..... ..... ..........+|...|+ +++
T Consensus 256 ~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~-------------------~~~~~~~~~~~h~~~V~-----~v~ 310 (345)
T 3fm0_A 256 YDIAWCQLTGALATACGDDAIRVFQEDPNS-DPQQP-------------------TFSLTAHLHQAHSQDVN-----CVA 310 (345)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEEECTTS-CTTSC-------------------CEEEEEEETTSSSSCEE-----EEE
T ss_pred EEEEEecCCCEEEEEeCCCeEEEEEeCCCC-Cccee-------------------eEEEEeeecccccCcEe-----EeE
Confidence 999999999999999999999999932110 00000 00011223456777777 899
Q ss_pred EcCCC-CEEEEeeccCCcceEEEEecC-CceeE
Q 008844 300 FSGDG-EWVIAGSASKGEHKIYIWDRA-GYLVK 330 (551)
Q Consensus 300 ~s~dg-~~l~~gs~~~~dg~I~iwd~~-~~~~~ 330 (551)
|+|++ .+||+|+. ||.|+||++. ++...
T Consensus 311 ~~p~~~~~laS~s~---Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 311 WNPKEPGLLASCSD---DGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ECSSSTTEEEEEET---TSCEEEEEECC-----
T ss_pred EeCCCceEEEEcCC---CCcEEEEEecCCCCcc
Confidence 99998 59999999 9999999998 55443
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-32 Score=279.53 Aligned_cols=273 Identities=18% Similarity=0.305 Sum_probs=230.1
Q ss_pred ccce-EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 22 EHGV-MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 22 h~~~-V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
|.+. ++|+.+ +|++|++|+.||+|++||+.+++.+..+.+| ...|.+++|+ +++|++++.|++|++||+.+++
T Consensus 117 h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 117 HDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH--TGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp STTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCC--SSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE
T ss_pred cCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCC--CCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc
Confidence 6655 566555 6899999999999999999999999888765 8999999997 5799999999999999999999
Q ss_pred EEEEEEcCCC-eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 101 KITRIVLQQT-PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.+..+..+.. +.++.+++ ..+++++.++.+++||+.++....... .|...+.++
T Consensus 191 ~~~~~~~h~~~v~~~~~~~-----~~l~s~s~dg~i~~wd~~~~~~~~~~~--------------------~~~~~v~~~ 245 (445)
T 2ovr_B 191 CIHTLYGHTSTVRCMHLHE-----KRVVSGSRDATLRVWDIETGQCLHVLM--------------------GHVAAVRCV 245 (445)
T ss_dssp EEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEESSSCCEEEEEE--------------------CCSSCEEEE
T ss_pred EEEEECCCCCcEEEEEecC-----CEEEEEeCCCEEEEEECCCCcEEEEEc--------------------CCcccEEEE
Confidence 9999887654 66777754 379999999999999999887654321 123378888
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
+| ++.++++|+.||.|++||+.+++.+..+. .|...|.++.| ++.+|++++.|+.|++||+.
T Consensus 246 ~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~------------- 307 (445)
T 2ovr_B 246 QY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE------------- 307 (445)
T ss_dssp EE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETT-------------
T ss_pred EE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECC-------------
Confidence 88 78899999999999999999999888886 78899999999 78899999999999999932
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec---C
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG---P 335 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~---h 335 (551)
...++..+..|...+. ++. +++++|++|+. ||.|++||+. ++++..+.+ |
T Consensus 308 ----------------~~~~~~~~~~~~~~v~-----~~~--~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~ 361 (445)
T 2ovr_B 308 ----------------TGNCIHTLTGHQSLTS-----GME--LKDNILVSGNA---DSTVKIWDIKTGQCLQTLQGPNKH 361 (445)
T ss_dssp ----------------TCCEEEEECCCCSCEE-----EEE--EETTEEEEEET---TSCEEEEETTTCCEEEEECSTTSC
T ss_pred ----------------CCCEEEEEcCCcccEE-----EEE--EeCCEEEEEeC---CCeEEEEECCCCcEEEEEccCCCC
Confidence 2445666777776665 344 46789999999 9999999999 999999987 8
Q ss_pred CCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 336 KEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 336 ~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
...|.+++|+ +.+|++++.||.|+||++.+++..
T Consensus 362 ~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 362 QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 8899999995 579999999999999999987643
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-32 Score=281.60 Aligned_cols=292 Identities=12% Similarity=0.203 Sum_probs=233.2
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEec--CCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS--KYG 79 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s--~~g 79 (551)
.|+|||..+++....+.. |.+.|++++|++++ +|++|+.||+|++||+.+++.+..+.+| ...|.+++|+ +++
T Consensus 143 ~i~vwd~~~~~~~~~~~~--h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~ 217 (464)
T 3v7d_B 143 MIRVYDSINKKFLLQLSG--HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH--NSTVRCLDIVEYKNI 217 (464)
T ss_dssp CEEEEETTTTEEEEEECC--CSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEEESSSC
T ss_pred cEEEEECCCCcEEEEEeC--CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC--CCccEEEEEecCCCC
Confidence 478999999887666654 88999999999988 9999999999999999999999888765 8999999998 578
Q ss_pred CEEEEEeCCCCEEEEEcCCCeE-----------------------EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcE
Q 008844 80 HRILVSAADKSLTLWDVLKGEK-----------------------ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPM 136 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~~-----------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~ 136 (551)
.+|++++.|++|++||+.++.. +..+..+.. ....+.++ ..++++++.++.++
T Consensus 218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~---~~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTVSGH---GNIVVSGSYDNTLI 293 (464)
T ss_dssp EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS-CEEEEEEE---TTEEEEEETTSCEE
T ss_pred CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc-eEEEEcCC---CCEEEEEeCCCeEE
Confidence 9999999999999999987753 223333332 12223444 34899999999999
Q ss_pred EEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCc
Q 008844 137 IVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGA 216 (551)
Q Consensus 137 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 216 (551)
+||+.++....... .|...+.+++|+|++++|++|+.||.|++||+.+++.+..+. .|.
T Consensus 294 vwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~ 352 (464)
T 3v7d_B 294 VWDVAQMKCLYILS--------------------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHT 352 (464)
T ss_dssp EEETTTTEEEEEEC--------------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCS
T ss_pred EEECCCCcEEEEec--------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCC
Confidence 99999887654321 233389999999999999999999999999999999988886 789
Q ss_pred cceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 217 AVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 217 ~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
..|.+++|+ +.+|++++.||.|++||+... ...... .+...+.
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~-----------------------------~~~~~~-~~~~~~~----- 395 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDY-----------------------------SRKFSY-HHTNLSA----- 395 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTC-----------------------------CEEEEE-ECTTCCC-----
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCC-----------------------------ceeeee-cCCCCcc-----
Confidence 999999997 579999999999999993221 111111 2333343
Q ss_pred eeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEE-EecCCCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 297 APCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKI-LEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~-l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
.++|++++++|++|+ ++.|+|||+. ++++.. +..|...|.+++|+ ...++++++.||.+.+|-+
T Consensus 396 ~~~~~~~~~~l~~~~----dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS----ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEEECSSEEEEEE----TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEEEeCCCEEEEec----CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 679999999999988 5899999999 888875 67788999999997 3445666666887766654
No 77
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-32 Score=266.07 Aligned_cols=265 Identities=17% Similarity=0.238 Sum_probs=196.5
Q ss_pred CccccccCCCCcc--ceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC-------CceeeEeecccccccEEE
Q 008844 2 NAPIIDPLQGDFP--EVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET-------RGIAKELRDKECVAAITS 72 (551)
Q Consensus 2 nl~lwd~~~~~~~--~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~-------~~~~~~~~~~~h~~~V~~ 72 (551)
.|+|||...+... ..+....|.+.|.+++|+|++++||+|+.|++|+||++.. ...+..+.+| ...|.+
T Consensus 35 ~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h--~~~V~~ 112 (330)
T 2hes_X 35 KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH--ENEVKG 112 (330)
T ss_dssp CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------CEEE
T ss_pred EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC--CCcEEE
Confidence 4789998876432 2222223888999999999999999999999999999853 3445566554 899999
Q ss_pred EEecCCCCEEEEEeCCCCEEEEEcCCC----eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceee
Q 008844 73 VCWSKYGHRILVSAADKSLTLWDVLKG----EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSI 147 (551)
Q Consensus 73 l~~s~~g~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 147 (551)
++|+|++++|++|+.|++|++||+... +++..+..|. .+..+.|+|++. ++++++.|+.+++|++..+....
T Consensus 113 v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~---~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 113 VAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA---LLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp EEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS---EEEEEETTSCEEEEEEETTEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC---EEEEEcCCCeEEEEECCCCCeeE
Confidence 999999999999999999999999432 4566676664 588999999754 89999999999999987763221
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC--CCEEEEEecCceEEEEECCCC--------cEEEeeeccCcc
Q 008844 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY--GDLVYVGNSKGEILVIDHKSN--------QIRALVPVSGAA 217 (551)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~--------~~~~~~~~~~~~ 217 (551)
... ...|...|.+++|+|+ +.+|++|+.|++|++||+.++ .....+...|..
T Consensus 190 ~~~------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 190 VAV------------------LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp EEE------------------ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred EEE------------------ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 111 1223448999999999 678999999999999998765 334444434889
Q ss_pred ceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceee-eeeccccc-ccceeee
Q 008844 218 VIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCL-ALFREFQD-SITKMHW 295 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~ 295 (551)
.|.+++|++++ +|++++.||.|+||+.... ....+ .....|.. .+.
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~---------------------------~~~~~~~~~~~h~~~~v~---- 299 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDG---------------------------EWKVFAKRALCHGVYEIN---- 299 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEEEETT---------------------------EEEEEEEESCTTTTSCEE----
T ss_pred ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC---------------------------ceEEEeccccccccceEE----
Confidence 99999999665 8999999999999992110 00112 22344554 555
Q ss_pred eeeEEcC--CCCEEEEeeccCCcceEEEEecC
Q 008844 296 KAPCFSG--DGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 296 ~~~~~s~--dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
+++|+| ++++|++|+. ||.|+||++.
T Consensus 300 -~v~~~~~~~~~~las~s~---Dg~v~~W~~~ 327 (330)
T 2hes_X 300 -VVKWLELNGKTILATGGD---DGIVNFWSLE 327 (330)
T ss_dssp -EEEEC-----CCEEEEET---TSEEEEEEC-
T ss_pred -EEEEecCCCceEEEEecC---CCcEEEEEec
Confidence 889999 7999999999 9999999975
No 78
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-32 Score=269.44 Aligned_cols=273 Identities=13% Similarity=0.138 Sum_probs=200.4
Q ss_pred CccccccCCCCc----ccee-ecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEec
Q 008844 2 NAPIIDPLQGDF----PEVI-EEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS 76 (551)
Q Consensus 2 nl~lwd~~~~~~----~~~l-~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s 76 (551)
.|+|||...++. ...+ ....|...|.+++|+|++.+|++|+.|++|+|||+.+++.+..+.+| ...|.+++|+
T Consensus 50 ~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~s 127 (343)
T 2xzm_R 50 TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH--QSEVYSVAFS 127 (343)
T ss_dssp CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC--CSCEEEEEEC
T ss_pred EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC--CCcEEEEEEC
Confidence 478999875431 1111 12237889999999999999999999999999999999999988766 8999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeEEEEEE----cCCCeeEEEEecCCCC-------CcEEEEeeCCCCcEEEEcCCCce
Q 008844 77 KYGHRILVSAADKSLTLWDVLKGEKITRIV----LQQTPLQARLHPGSST-------PSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 77 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~p~~~~-------~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
|++++|++++.|++|++||+... ...... ....+.++.|+|.+.. ..++++++.++.+++||... ..
T Consensus 128 p~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~ 205 (343)
T 2xzm_R 128 PDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI 205 (343)
T ss_dssp SSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE
T ss_pred CCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce
Confidence 99999999999999999999743 333332 2234788999987532 25899999999999999433 22
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCC-CcEEEeeeccCccceEEEEE
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKS-NQIRALVPVSGAAVIKNIVF 224 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~ 224 (551)
.... ..|...|.+++|+|+|++|++|+.||.|++||+.. ......+ .+...|.+++|
T Consensus 206 ~~~~--------------------~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~ 263 (343)
T 2xzm_R 206 RYTF--------------------KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF--DAGSTINQIAF 263 (343)
T ss_dssp EEEE--------------------ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE--ECSSCEEEEEE
T ss_pred eEEE--------------------cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee--cCCCcEEEEEE
Confidence 1110 12334899999999999999999999999999954 3344444 35567999999
Q ss_pred eeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC
Q 008844 225 SRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG 304 (551)
Q Consensus 225 s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg 304 (551)
+|++.+|+++ .|+.|++|++......... .+. ...........+|...+. +++|+|+|
T Consensus 264 sp~~~~la~~-~d~~v~iw~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~~~~~v~-----~~~~sp~g 321 (343)
T 2xzm_R 264 NPKLQWVAVG-TDQGVKIFNLMTQSKAPVC---TIE-------------AEPITKAEGQKGKNPQCT-----SLAWNALG 321 (343)
T ss_dssp CSSSCEEEEE-ESSCEEEEESSSCCSCSEE---ECC-------------CCSGGGBTTBCCSCCCEE-----EEEECSSS
T ss_pred CCCCCEEEEE-CCCCEEEEEeCCCCCCceE---Eee-------------cCcchhhhhhcCCCCceE-----EEEECCCC
Confidence 9999877655 6888999994322100000 000 000000111224555555 89999999
Q ss_pred CEEEEeeccCCcceEEEEecC
Q 008844 305 EWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 305 ~~l~~gs~~~~dg~I~iwd~~ 325 (551)
++|++|+. ||.|++|++.
T Consensus 322 ~~l~sg~~---Dg~v~~w~~~ 339 (343)
T 2xzm_R 322 KKLFAGFT---DGVIRTFSFE 339 (343)
T ss_dssp CCEEEEET---TSEEEEEEEE
T ss_pred CeEEEecC---CceEEEEEEE
Confidence 99999999 9999999986
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.4e-32 Score=271.57 Aligned_cols=278 Identities=14% Similarity=0.194 Sum_probs=220.9
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.|+|||..+|+....+....|...|+||+|+|+|++||+|+.||+|+|||+.+++.+..+.+| ...|.+++|+ +.+
T Consensus 126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h--~~~v~~~s~~--~~~ 201 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH--SARVGSLSWN--SYI 201 (420)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEE--TTE
T ss_pred EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC--CCceEEEeeC--CCE
Confidence 378999999998887776667788999999999999999999999999999999999998766 8999998885 679
Q ss_pred EEEEeCCCCEEEEEcCCC-eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKG-EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
|++|+.|+.+++||.... ..+..+..+. .+..+.+.|.+. ++++++.++.+.+|++..+.........
T Consensus 202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~---~l~s~~~D~~v~i~~~~~~~~~~~~~~~------- 271 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR---HLASGGNDNLVNVWPSAPGEGGWVPLQT------- 271 (420)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS---EEEEEETTSCEEEEESSCCSSCSCCSEE-------
T ss_pred EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC---eeeeeeccccceEEeeccccccceeeee-------
Confidence 999999999999998764 4556666665 466788888754 8999999999999999887643222111
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEE--ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee-
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYG-DLVYVG--NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS- 235 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s- 235 (551)
...+...|.+++|+|.+ .+++++ +.|+.|++||+.++++...+ .+...+.++.|+++++.|++++
T Consensus 272 ---------~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~--~~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 272 ---------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp ---------ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE--ECSSCEEEEEEETTTTEEEEEEC
T ss_pred ---------ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee--ccccceeeeeecCCCCeEEEEEe
Confidence 12233489999999987 555553 57999999999999998888 5567899999999999988765
Q ss_pred -CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC
Q 008844 236 -NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK 314 (551)
Q Consensus 236 -~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~ 314 (551)
.|+.|+|||+ ....++..+.+|...|+ +++|+|+|++|++|+.
T Consensus 341 ~~d~~I~iwd~-----------------------------~~~~~v~~l~gH~~~V~-----~l~~spdg~~l~S~s~-- 384 (420)
T 4gga_A 341 FAQNQLVIWKY-----------------------------PTMAKVAELKGHTSRVL-----SLTMSPDGATVASAAA-- 384 (420)
T ss_dssp TTTCCEEEEET-----------------------------TTCCEEEEECCCSSCEE-----EEEECTTSSCEEEEET--
T ss_pred cCCCEEEEEEC-----------------------------CCCcEEEEEcCCCCCEE-----EEEEcCCCCEEEEEec--
Confidence 6999999992 23566788899999988 8999999999999999
Q ss_pred CcceEEEEecC-CceeEEEecCCCceEE
Q 008844 315 GEHKIYIWDRA-GYLVKILEGPKEALID 341 (551)
Q Consensus 315 ~dg~I~iwd~~-~~~~~~l~~h~~~v~~ 341 (551)
|++|+|||+. ..+.+....+...+..
T Consensus 385 -D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 385 -DETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp -TTEEEEECCSCSSCC------------
T ss_pred -CCeEEEEECCCCCccchhhhccCCccc
Confidence 9999999998 6566655555544433
No 80
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.8e-32 Score=266.47 Aligned_cols=274 Identities=14% Similarity=0.177 Sum_probs=210.7
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE-EEEeCCCCEEEEEcCCCe
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI-LVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~s~dg~i~vwd~~~~~ 100 (551)
|...|+|++|+|+|++||+|+.++ ++||++.++........ ..+..++|.++++++ ++++.|++|++||+.+++
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC----SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec----CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 789999999999999999998765 78999988766554432 247788888888877 567778999999999999
Q ss_pred EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC-ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 101 KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG-STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
.+..+..+..+..+.++++ .+++ ..++.+++||+.++ +.... +.. ....+
T Consensus 93 ~~~~~~~~~~v~~v~~~~~-----~~~~-~~~~~i~i~d~~~~~~~~~~-~~~----------------------~~~~~ 143 (355)
T 3vu4_A 93 DVSRIKVDAPVKDLFLSRE-----FIVV-SYGDVISVFKFGNPWKRITD-DIR----------------------FGGVC 143 (355)
T ss_dssp EEEEEECSSCEEEEEECSS-----EEEE-EETTEEEEEESSTTCCBSSC-CEE----------------------EEEEE
T ss_pred EEEEEECCCceEEEEEcCC-----EEEE-EEcCEEEEEECCCCceeeEE-ecc----------------------CCceE
Confidence 9999998888999999875 2333 35789999999887 32211 000 22345
Q ss_pred EEeeCCCEEEE--EecCceEEEEECCCCc----------------EEEeeeccCccceEEEEEeeCCCEEEEeeCCCe-E
Q 008844 180 CFNKYGDLVYV--GNSKGEILVIDHKSNQ----------------IRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRT-I 240 (551)
Q Consensus 180 ~~s~~g~~l~~--g~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~-i 240 (551)
++++ .++++ |+.+|.|++||+.++. .+..+. .|...|++++|+|+|++|++++.|++ |
T Consensus 144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp EEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence 5666 56666 5889999999999865 134443 89999999999999999999999998 9
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec-c-cccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR-E-FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
+|||+. ...++..+. + |...|. +++|+|+|++|++++. |+.
T Consensus 221 ~iwd~~-----------------------------~~~~~~~~~~g~h~~~v~-----~~~~s~~~~~l~s~s~---d~~ 263 (355)
T 3vu4_A 221 RVFKTE-----------------------------DGVLVREFRRGLDRADVV-----DMKWSTDGSKLAVVSD---KWT 263 (355)
T ss_dssp EEEETT-----------------------------TCCEEEEEECTTCCSCEE-----EEEECTTSCEEEEEET---TCE
T ss_pred EEEECC-----------------------------CCcEEEEEEcCCCCCcEE-----EEEECCCCCEEEEEEC---CCE
Confidence 999932 245566666 4 777777 8999999999999999 999
Q ss_pred EEEEecC-Cc--eeEEEec---------------------CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 319 IYIWDRA-GY--LVKILEG---------------------PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 319 I~iwd~~-~~--~~~~l~~---------------------h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
|+|||+. +. ....+.+ +......++|+|++.+|++++.||.+++|++...+
T Consensus 264 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999997 32 1111111 12234779999999999999999999999987644
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-31 Score=265.33 Aligned_cols=266 Identities=13% Similarity=0.200 Sum_probs=215.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.|.|||..+++....+.. .|...|++++|+|+|++|++|+.||.|+|||+.+++.+..+.+| ...|.+++| ++++
T Consensus 114 ~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~ 188 (401)
T 4aez_A 114 NVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH--QARVGCLSW--NRHV 188 (401)
T ss_dssp EEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEE--ETTE
T ss_pred eEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCC--CCceEEEEE--CCCE
Confidence 478999999887665543 36789999999999999999999999999999999999998765 899999999 4679
Q ss_pred EEEEeCCCCEEEEEcC-CCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVL-KGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~-~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
|++++.|+.|++||+. .+..+..+..+. .+..+.|+|++ .++++++.++.+++||+.++.......
T Consensus 189 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~--------- 256 (401)
T 4aez_A 189 LSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG---LQLASGGNDNVVQIWDARSSIPKFTKT--------- 256 (401)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTCSSEEEEEC---------
T ss_pred EEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC---CEEEEEeCCCeEEEccCCCCCccEEec---------
Confidence 9999999999999998 466677776665 57889999965 489999999999999999876544321
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEe--cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEE--e
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGN--SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLT--N 234 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t--~ 234 (551)
.+...|.+++|+|++ .++++|+ .+|.|++||+.+++.+..+ .+...|.+++|+|++++|++ |
T Consensus 257 -----------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~g 323 (401)
T 4aez_A 257 -----------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--DAGSQVTSLIWSPHSKEIMSTHG 323 (401)
T ss_dssp -----------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEECSSSSEEEEEEC
T ss_pred -----------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--eCCCcEEEEEECCCCCeEEEEee
Confidence 233389999999987 5666654 7999999999999998888 57788999999999999999 4
Q ss_pred eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC
Q 008844 235 SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK 314 (551)
Q Consensus 235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~ 314 (551)
+.||.|++|++... .......+..|...+. +++|+|+|++|++++.
T Consensus 324 ~~dg~i~v~~~~~~---------------------------~~~~~~~~~~h~~~v~-----~~~~s~dg~~l~s~~~-- 369 (401)
T 4aez_A 324 FPDNNLSIWSYSSS---------------------------GLTKQVDIPAHDTRVL-----YSALSPDGRILSTAAS-- 369 (401)
T ss_dssp TTTCEEEEEEEETT---------------------------EEEEEEEEECCSSCCC-----EEEECTTSSEEEEECT--
T ss_pred cCCCcEEEEecCCc---------------------------cceeEEEecCCCCCEE-----EEEECCCCCEEEEEeC--
Confidence 48999999992211 1222334567777787 8899999999999999
Q ss_pred CcceEEEEecC-CceeEEE
Q 008844 315 GEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 315 ~dg~I~iwd~~-~~~~~~l 332 (551)
||.|++|++. ++.+...
T Consensus 370 -dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 370 -DENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp -TSEEEEEECCC-------
T ss_pred -CCcEEEEECCCCcccccc
Confidence 9999999999 7665544
No 82
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=285.75 Aligned_cols=250 Identities=11% Similarity=0.090 Sum_probs=189.0
Q ss_pred ccceEEEEEEcCCC---------CEEEE-------------------EeCCCeEEEEeccCCcee----eEeeccccccc
Q 008844 22 EHGVMKCIAFNRRG---------TLLAA-------------------GCSDGSCVIWDFETRGIA----KELRDKECVAA 69 (551)
Q Consensus 22 h~~~V~~l~fs~dg---------~~lat-------------------g~~dg~I~iwd~~~~~~~----~~~~~~~h~~~ 69 (551)
+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++.. ..+.. |...
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~--~~~~ 209 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVH--SFGE 209 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEE--CCCS
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEe--cCCc
Confidence 46778888888876 56666 457789999999887643 23333 4788
Q ss_pred EEEEEecCC------CCEEEEEeCCCCEEEEEcCCCeEEE--EEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC
Q 008844 70 ITSVCWSKY------GHRILVSAADKSLTLWDVLKGEKIT--RIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLS 141 (551)
Q Consensus 70 V~~l~~s~~------g~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~ 141 (551)
|.+|+|+|+ +.+|++++.|++|+|||+.++.... .+....+. .
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~-------------~---------------- 260 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS-------------L---------------- 260 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS-------------E----------------
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce-------------E----------------
Confidence 999999996 5799999999999999997654210 00000000 0
Q ss_pred CCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE-EEeeeccCccceE
Q 008844 142 TGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI-RALVPVSGAAVIK 220 (551)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~ 220 (551)
....|...|++++|++++ .|++|+.||+|++||++++.. ...+. .|...|+
T Consensus 261 --------------------------~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~ 312 (524)
T 2j04_B 261 --------------------------TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYIL 312 (524)
T ss_dssp --------------------------EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEE
T ss_pred --------------------------EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEee-cccccEE
Confidence 001122389999999864 899999999999999997643 33344 7999999
Q ss_pred EE--EEeeCC-CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc--ccceeee
Q 008844 221 NI--VFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD--SITKMHW 295 (551)
Q Consensus 221 ~l--~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 295 (551)
+| +|+|++ .+|++++.|++|+|||+.. ..++..+.+|.. .+.
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~-----------------------------~~~~~~~~~~~~~~~v~---- 359 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-----------------------------IATTKTTVSRFRGSNLV---- 359 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGGG-----------------------------HHHHCEEEEECSCCSCC----
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECCC-----------------------------CCcccccccccccCccc----
Confidence 99 568887 8999999999999999321 233334444432 244
Q ss_pred eeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 296 KAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 296 ~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+++|+|+++.|++++. ++.|++||+. +.++..+.+|...|++|+|+|++++|++|+.||+|+||++..
T Consensus 360 -~v~fsp~~~~l~s~~~---d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 360 -PVVYCPQIYSYIYSDG---ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp -CEEEETTTTEEEEECS---SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred -ceEeCCCcCeEEEeCC---CCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 7899999999999998 8999999999 888888999999999999999999999999999999999754
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.6e-32 Score=272.22 Aligned_cols=264 Identities=16% Similarity=0.244 Sum_probs=208.9
Q ss_pred CccccccCC-CCccceeec-ccccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCC-------ceeeEeecccccccEE
Q 008844 2 NAPIIDPLQ-GDFPEVIEE-YLEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETR-------GIAKELRDKECVAAIT 71 (551)
Q Consensus 2 nl~lwd~~~-~~~~~~l~~-~~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~-------~~~~~~~~~~h~~~V~ 71 (551)
.|.||+... +.....+.. ..|.+.|++++|+| ++++||+|+.||+|+||++.++ ..+..+.+| ...|.
T Consensus 58 ~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h--~~~v~ 135 (402)
T 2aq5_A 58 AFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH--TKRVG 135 (402)
T ss_dssp CEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC--SSCEE
T ss_pred EEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC--CCeEE
Confidence 467888753 333222222 23789999999999 9999999999999999999987 556777655 89999
Q ss_pred EEEecCCC-CEEEEEeCCCCEEEEEcCCCeEEEEEE--cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeee
Q 008844 72 SVCWSKYG-HRILVSAADKSLTLWDVLKGEKITRIV--LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL 148 (551)
Q Consensus 72 ~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 148 (551)
+++|+|++ ++|++++.|++|++||+.+++.+..+. .+.
T Consensus 136 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------------- 176 (402)
T 2aq5_A 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP--------------------------------------- 176 (402)
T ss_dssp EEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC---------------------------------------
T ss_pred EEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC---------------------------------------
Confidence 99999998 699999999999999999988776662 221
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccc-eEEEEEeeC
Q 008844 149 PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAV-IKNIVFSRN 227 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~l~~s~~ 227 (551)
..|++++|+|++++|++++.||.|++||+++++.+..+...|... +.+++|+|+
T Consensus 177 -------------------------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 177 -------------------------DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp -------------------------SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred -------------------------CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence 178999999999999999999999999999999888873366654 899999999
Q ss_pred CCEEEEe---eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEcCC
Q 008844 228 GQYLLTN---SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFSGD 303 (551)
Q Consensus 228 g~~l~t~---s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s~d 303 (551)
+++|+++ +.|+.|++||+.... ..+... ..+...+. .++|+|+
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~----------------------------~~~~~~~~~~~~~v~-----~~~~s~~ 278 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLE----------------------------EPLSLQELDTSSGVL-----LPFFDPD 278 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCS----------------------------SCSEEEECCCCSSCE-----EEEEETT
T ss_pred CcEEEEeccCCCCceEEEEcCcccc----------------------------CCceEEeccCCCcee-----EEEEcCC
Confidence 9999999 799999999932210 001111 12344454 8899999
Q ss_pred CCEEEE-eeccCCcceEEEEecC-Cce-eEEEec--CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 304 GEWVIA-GSASKGEHKIYIWDRA-GYL-VKILEG--PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 304 g~~l~~-gs~~~~dg~I~iwd~~-~~~-~~~l~~--h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+++|++ |+. |+.|++|++. ++. +..+.. |...|.+++|+|++.++++ .++.+++|++.+..
T Consensus 279 ~~~l~~~g~~---dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 279 TNIVYLCGKG---DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp TTEEEEEETT---CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred CCEEEEEEcC---CCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 999975 556 8999999999 653 555554 4589999999999998875 46799999998643
No 84
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-31 Score=267.22 Aligned_cols=289 Identities=15% Similarity=0.112 Sum_probs=222.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---eeeEeecc------------------------------------
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG---IAKELRDK------------------------------------ 64 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~---~~~~~~~~------------------------------------ 64 (551)
.++.|++|+++|++|+++ .++.|++||+.+++ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999977766 47899999999998 55555422
Q ss_pred ----------------cccccEEEEEecCCCCEE-EEEeCCCCEEEEEcC--CCeEEEEEE---cCCCeeEEEEecCCCC
Q 008844 65 ----------------ECVAAITSVCWSKYGHRI-LVSAADKSLTLWDVL--KGEKITRIV---LQQTPLQARLHPGSST 122 (551)
Q Consensus 65 ----------------~h~~~V~~l~~s~~g~~l-~s~s~dg~i~vwd~~--~~~~~~~~~---~~~~~~~~~~~p~~~~ 122 (551)
.|...|++++|+|++++| ++++.|++|+|||+. ++..+..+. ....+.++.|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~- 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT- 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-
Confidence 133479999999999996 888899999999999 888877774 345688999999864
Q ss_pred CcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC---CCEEEEEecCceEEE
Q 008844 123 PSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY---GDLVYVGNSKGEILV 199 (551)
Q Consensus 123 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~g~~dg~i~i 199 (551)
++++++.++.+++|++..+...... ......|...|++++|+|+ +++|++|+.|+.|++
T Consensus 163 --~l~~~~~~g~v~~~~~~~~~~~~~~----------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~v 224 (450)
T 2vdu_B 163 --TVIIADKFGDVYSIDINSIPEEKFT----------------QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKI 224 (450)
T ss_dssp --EEEEEETTSEEEEEETTSCCCSSCC----------------CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEE
T ss_pred --EEEEEeCCCcEEEEecCCccccccc----------------ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEE
Confidence 7889999999999999877643200 0011223448999999999 999999999999999
Q ss_pred EECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeecccee
Q 008844 200 IDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKC 279 (551)
Q Consensus 200 ~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (551)
||+.+++.+..+...|...|.+++|+ ++++|++++.|+.|++||+... .+
T Consensus 225 wd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-----------------------------~~ 274 (450)
T 2vdu_B 225 SHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-----------------------------KN 274 (450)
T ss_dssp EEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC-----------------------------CE
T ss_pred EECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-----------------------------cE
Confidence 99999988777545799999999999 9999999999999999994321 11
Q ss_pred eeeeccc--------------------ccccceeeeeeeEEcCCCCEEEEee-ccCCcceEEEEec--C-C---ceeEEE
Q 008844 280 LALFREF--------------------QDSITKMHWKAPCFSGDGEWVIAGS-ASKGEHKIYIWDR--A-G---YLVKIL 332 (551)
Q Consensus 280 ~~~~~~~--------------------~~~v~~~~~~~~~~s~dg~~l~~gs-~~~~dg~I~iwd~--~-~---~~~~~l 332 (551)
+..+..+ ........+..++|+|++++|++++ . ++.|+||++ . + ..+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~---d~~i~iw~~~~~~~~~l~~~~~~ 351 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA---TKCIIILEMSEKQKGDLALKQII 351 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT---CSEEEEEEECSSSTTCEEEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC---CCeEEEEEeccCCCCceeeccEe
Confidence 1111100 0001122344889999999999998 6 899999999 4 5 677788
Q ss_pred ecCCCceEEEEEecCCCeEEEEcC-------CCcEEEEecCC
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSL-------TGWVYIWAKDY 367 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~-------dg~i~iW~~~~ 367 (551)
.+| ..|.+++|+|++ ++++++. +..|.||.+..
T Consensus 352 ~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 352 TFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 888 889999999954 5555433 45589998764
No 85
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=294.26 Aligned_cols=251 Identities=16% Similarity=0.276 Sum_probs=209.1
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEecc--CCceeeEeecccccccEEEEEecCC--CCEEEEEeCCCCEEEEEcC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFE--TRGIAKELRDKECVAAITSVCWSKY--GHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~--~~~~~~~~~~~~h~~~V~~l~~s~~--g~~l~s~s~dg~i~vwd~~ 97 (551)
|.+.|++++|+|+|++|++|+.||.|+||++. ++..+..+.+| ..+|++++|+|+ +++|++|+.||+|++||+.
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC--SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC--cCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence 88999999999999999999999999999998 45666667655 999999999988 9999999999999999998
Q ss_pred CCe--EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 98 KGE--KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 98 ~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
++. .+..+..+ ...
T Consensus 86 ~~~~~~~~~~~~h----------------------------------------------------------------~~~ 101 (753)
T 3jro_A 86 NGRWSQIAVHAVH----------------------------------------------------------------SAS 101 (753)
T ss_dssp TTEEEEEEEECCC----------------------------------------------------------------SSC
T ss_pred CCcccccccccCC----------------------------------------------------------------CCC
Confidence 876 22222222 128
Q ss_pred ceEEEEeeC--CCEEEEEecCceEEEEECCCCcE--EEeeeccCccceEEEEEee-------------CCCEEEEeeCCC
Q 008844 176 PTAACFNKY--GDLVYVGNSKGEILVIDHKSNQI--RALVPVSGAAVIKNIVFSR-------------NGQYLLTNSNDR 238 (551)
Q Consensus 176 i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~s~-------------~g~~l~t~s~Dg 238 (551)
|++++|+|+ +.++++|+.||.|++||+.++.. ...+. .|...|.+++|+| ++.+|++++.||
T Consensus 102 V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg 180 (753)
T 3jro_A 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180 (753)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence 899999999 99999999999999999998743 22232 7889999999999 589999999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC---CCEEEEeeccCC
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD---GEWVIAGSASKG 315 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d---g~~l~~gs~~~~ 315 (551)
.|++||+.... ........+..|...|. +++|+|+ +++|++|+.
T Consensus 181 ~I~iwd~~~~~-------------------------~~~~~~~~~~~h~~~V~-----~l~~sp~~~~~~~l~s~s~--- 227 (753)
T 3jro_A 181 LVKIWKYNSDA-------------------------QTYVLESTLEGHSDWVR-----DVAWSPTVLLRSYLASVSQ--- 227 (753)
T ss_dssp CEEEEEEETTT-------------------------TEEEEEEEECCCSSCEE-----EEEECCCCSSSEEEEEEES---
T ss_pred eEEEEeccCCc-------------------------ccceeeeeecCCCCcEE-----EEEeccCCCCCCEEEEEec---
Confidence 99999932210 00234556777888887 8999999 999999999
Q ss_pred cceEEEEecC-Cc-----eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 316 EHKIYIWDRA-GY-----LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 316 dg~I~iwd~~-~~-----~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
||.|+|||+. +. .+.....|...|++++|+|++++|++++.||.|+||++.....|.
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~ 290 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence 9999999998 43 333345588899999999999999999999999999999877665
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.7e-32 Score=266.86 Aligned_cols=282 Identities=14% Similarity=0.122 Sum_probs=217.3
Q ss_pred ccccccCCCCccceeeccc---ccceEEEEEEcCC----CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEe
Q 008844 3 APIIDPLQGDFPEVIEEYL---EHGVMKCIAFNRR----GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCW 75 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~---h~~~V~~l~fs~d----g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~ 75 (551)
|.|||..++.....+..+. |...|++++|+|+ |++|++|+.||.|+|||+.+++.+..+.+| ...|.+++|
T Consensus 46 v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~i~~~~~ 123 (366)
T 3k26_A 46 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH--GNAINELKF 123 (366)
T ss_dssp EEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC--CSCEEEEEE
T ss_pred EEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC--CCcEEEEEE
Confidence 6899998877666665443 5578999999999 679999999999999999999999988765 899999999
Q ss_pred cC-CCCEEEEEeCCCCEEEEEcCCCeEEEEE---E-cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeecc
Q 008844 76 SK-YGHRILVSAADKSLTLWDVLKGEKITRI---V-LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPI 150 (551)
Q Consensus 76 s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~---~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 150 (551)
+| ++.+|++++.|+.|++||+.+++.+..+ . ....+..+.|+|++. ++++++.++.+++||+.++.......
T Consensus 124 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~ 200 (366)
T 3k26_A 124 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE---KIMSCGMDHSLKLWRINSKRMMNAIK 200 (366)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS---EEEEEETTSCEEEEESCSHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC---EEEEecCCCCEEEEECCCCccccccc
Confidence 99 8999999999999999999999998888 3 334688999999754 79999999999999998865432111
Q ss_pred c---cCCCCCCCCCCC-----CCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE--------------E
Q 008844 151 A---VPDVANGIAPSS-----RNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI--------------R 208 (551)
Q Consensus 151 ~---~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--------------~ 208 (551)
. ............ ........+...|.+++|+ +++|++++.+|.|++||+.++.. +
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T 3k26_A 201 ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278 (366)
T ss_dssp HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence 0 000000000000 0001112255689999998 77999999999999999987643 4
Q ss_pred EeeeccCccceEEEEEeeC--CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc
Q 008844 209 ALVPVSGAAVIKNIVFSRN--GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF 286 (551)
Q Consensus 209 ~~~~~~~~~~i~~l~~s~~--g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (551)
..+. .|...|++++|+|+ +++|++++.||.|++||+..... .......+..|
T Consensus 279 ~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------~~~~~~~~~~~ 332 (366)
T 3k26_A 279 GRFD-YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP-------------------------HKAKCTTLTHH 332 (366)
T ss_dssp EEEE-CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG-------------------------GGCEEEEECCT
T ss_pred cccc-ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC-------------------------ccccceEEccc
Confidence 5554 68889999999999 99999999999999999322100 01123345555
Q ss_pred --ccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 287 --QDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 287 --~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
...|. +++|+|++++|++++. ||.|+|||+.
T Consensus 333 ~~~~~v~-----~~~~s~~~~~l~s~~~---dg~i~iwd~~ 365 (366)
T 3k26_A 333 KCGAAIR-----QTSFSRDSSILIAVCD---DASIWRWDRL 365 (366)
T ss_dssp TCCSCEE-----EEEECTTSSEEEEEET---TSEEEEEEC-
T ss_pred ccCCceE-----EEEeCCCCCeEEEEeC---CCEEEEEEec
Confidence 56666 8999999999999999 9999999974
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1e-31 Score=272.06 Aligned_cols=255 Identities=19% Similarity=0.309 Sum_probs=206.1
Q ss_pred eecccccceEEEEEEcCC-CCEEEEEeCCCeEEEEeccC----------CceeeEeecccccccEEEEEecCCCC-EEEE
Q 008844 17 IEEYLEHGVMKCIAFNRR-GTLLAAGCSDGSCVIWDFET----------RGIAKELRDKECVAAITSVCWSKYGH-RILV 84 (551)
Q Consensus 17 l~~~~h~~~V~~l~fs~d-g~~latg~~dg~I~iwd~~~----------~~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s 84 (551)
.....|.+.|++++|+|+ +.+||+|+.+|.|+||++.+ ...+..+.+| ...|++|+|+|++. +|++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH--QKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC--SSCCCCEEECTTSTTEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC--CCCeEEEEeCCCCCCeEEE
Confidence 445568899999999997 78999999999999999987 5666667655 89999999999988 9999
Q ss_pred EeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCC
Q 008844 85 SAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSR 164 (551)
Q Consensus 85 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (551)
|+.||+|++|++..+....... .+
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~----------~~---------------------------------------------- 223 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVI----------DA---------------------------------------------- 223 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEE----------EC----------------------------------------------
T ss_pred EeCCCeEEEEeCCCCCCCCcee----------cc----------------------------------------------
Confidence 9999999999998742100000 00
Q ss_pred CCCCCCCCCCCceEEEEee-CCCEEEEEecCceEEEEECCCC---cEEEeeeccCccceEEEEEeeCCC-EEEEeeCCCe
Q 008844 165 NKYSDGTPPFTPTAACFNK-YGDLVYVGNSKGEILVIDHKSN---QIRALVPVSGAAVIKNIVFSRNGQ-YLLTNSNDRT 239 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~---~~~~~~~~~~~~~i~~l~~s~~g~-~l~t~s~Dg~ 239 (551)
......|...|.+++|+| ++.+|++++.+|.|++||++++ +.+..+. .|...|++++|+|++. +|++++.||.
T Consensus 224 -~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~ 301 (430)
T 2xyi_A 224 -KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKT 301 (430)
T ss_dssp -SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred -ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence 000011223799999999 6789999999999999999987 4455554 7889999999999987 6889999999
Q ss_pred EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCC-EEEEeeccCCcce
Q 008844 240 IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGE-WVIAGSASKGEHK 318 (551)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~-~l~~gs~~~~dg~ 318 (551)
|++||+... ...+..+..|...+. +++|+|+++ +|++++. ++.
T Consensus 302 v~vwd~~~~----------------------------~~~~~~~~~h~~~v~-----~i~~sp~~~~~l~s~~~---d~~ 345 (430)
T 2xyi_A 302 VALWDLRNL----------------------------KLKLHSFESHKDEIF-----QVQWSPHNETILASSGT---DRR 345 (430)
T ss_dssp EEEEETTCT----------------------------TSCSEEEECCSSCEE-----EEEECSSCTTEEEEEET---TSC
T ss_pred EEEEeCCCC----------------------------CCCeEEeecCCCCEE-----EEEECCCCCCEEEEEeC---CCc
Confidence 999993321 234566677877777 899999995 5888888 999
Q ss_pred EEEEecC--C-------------ceeEEEecCCCceEEEEEecCCC-eEEEEcCCCcEEEEecCC
Q 008844 319 IYIWDRA--G-------------YLVKILEGPKEALIDLAWHPVHP-IIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 319 I~iwd~~--~-------------~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iW~~~~ 367 (551)
|+|||+. + .++..+.+|...|++++|+|+++ +|++++.||.|+||++..
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 9999998 2 67778889999999999999999 899999999999999874
No 88
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-31 Score=266.23 Aligned_cols=263 Identities=12% Similarity=0.123 Sum_probs=213.2
Q ss_pred CccccccCCCC------ccceeecccccceEEEEEEcCC----C---CEEEEEeCCCeEEEEeccCCce-----eeEeec
Q 008844 2 NAPIIDPLQGD------FPEVIEEYLEHGVMKCIAFNRR----G---TLLAAGCSDGSCVIWDFETRGI-----AKELRD 63 (551)
Q Consensus 2 nl~lwd~~~~~------~~~~l~~~~h~~~V~~l~fs~d----g---~~latg~~dg~I~iwd~~~~~~-----~~~~~~ 63 (551)
.|+|||..+++ ....+. .|...|++++|+|+ | ++|++|+.||.|++|++.++.. ...+..
T Consensus 37 ~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 114 (397)
T 1sq9_A 37 YLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 114 (397)
T ss_dssp EEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC
T ss_pred EEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecc
Confidence 37899998887 333333 48899999999999 9 9999999999999999998886 777765
Q ss_pred cc-c--cccEEEEEec----CCCCE-EEEEeCCCCEEEEEcCC------CeEEE-----EEEc--------CCCeeEEEE
Q 008844 64 KE-C--VAAITSVCWS----KYGHR-ILVSAADKSLTLWDVLK------GEKIT-----RIVL--------QQTPLQARL 116 (551)
Q Consensus 64 ~~-h--~~~V~~l~~s----~~g~~-l~s~s~dg~i~vwd~~~------~~~~~-----~~~~--------~~~~~~~~~ 116 (551)
|. | ...|.+++|+ |++++ |++++.|+.|++||+.+ +..+. .+.. ...+.++.|
T Consensus 115 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 115 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE
Confidence 41 1 4899999999 99999 99999999999999988 65554 5543 456889999
Q ss_pred ecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC---CCCceEEEEeeCCCEEEEEec
Q 008844 117 HPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP---PFTPTAACFNKYGDLVYVGNS 193 (551)
Q Consensus 117 ~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~g~~l~~g~~ 193 (551)
+|++ ++++++.++.+++||+.++......... ..| ...+.+++|+|++.+|++++.
T Consensus 195 ~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------~~h~~~~~~i~~i~~~~~~~~l~~~~~ 253 (397)
T 1sq9_A 195 SERG----LIATGFNNGTVQISELSTLRPLYNFESQ-----------------HSMINNSNSIRSVKFSPQGSLLAIAHD 253 (397)
T ss_dssp CTTS----EEEEECTTSEEEEEETTTTEEEEEEECC-----------------C---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred CCCc----eEEEEeCCCcEEEEECCCCceeEEEecc-----------------ccccccCCccceEEECCCCCEEEEEec
Confidence 9964 8999999999999999987654432210 012 338999999999999999999
Q ss_pred C---ceEEEEECCCCcEEEeeecc-------------CccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhh
Q 008844 194 K---GEILVIDHKSNQIRALVPVS-------------GAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 194 d---g~i~i~d~~~~~~~~~~~~~-------------~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
+ |.|++||+.+++.+..+. . |...|.+++|+|++++|++++.|+.|++||+..
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------- 322 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT---------- 322 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------
T ss_pred CCCCceEEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC----------
Confidence 9 999999999999888876 4 889999999999999999999999999999322
Q ss_pred hhhccCCCCCcceeeeeccceeeeeec------cc---------------ccccceeeeeeeEEcCCC----------CE
Q 008844 258 DIEKGIAEPNGIEKMKMVGSKCLALFR------EF---------------QDSITKMHWKAPCFSGDG----------EW 306 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~~s~dg----------~~ 306 (551)
..++..+. .| ...|. +++|+|+| ++
T Consensus 323 -------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~-----~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 323 -------------------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-----DVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp -------------------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE-----EEEEECTTTSBSTTCTTSCE
T ss_pred -------------------CceeEEEecccCcccchhhhhccccccccccCCcee-----EEEeccccccccccccccce
Confidence 23344444 34 66666 89999998 79
Q ss_pred EEEeeccCCcceEEEEecC
Q 008844 307 VIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 307 l~~gs~~~~dg~I~iwd~~ 325 (551)
|++++. ||.|+||++.
T Consensus 379 l~s~~~---dg~i~iw~~~ 394 (397)
T 1sq9_A 379 LCCVCL---DRSIRWFREA 394 (397)
T ss_dssp EEEEET---TTEEEEEEEE
T ss_pred EEEecC---CCcEEEEEcC
Confidence 999999 9999999986
No 89
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-30 Score=281.28 Aligned_cols=266 Identities=16% Similarity=0.207 Sum_probs=204.6
Q ss_pred CccccccCCCCccc---eeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 2 NAPIIDPLQGDFPE---VIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 2 nl~lwd~~~~~~~~---~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
.|+||+........ ......|...|.+++|+|+|++|++|+.||+|+|||+.++..+..+.+| ...|.+++|+|+
T Consensus 406 ~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h--~~~v~~~~~s~~ 483 (694)
T 3dm0_A 406 SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH--TKDVLSVAFSLD 483 (694)
T ss_dssp EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECTT
T ss_pred cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC--CCCEEEEEEeCC
Confidence 47899987543211 1112238899999999999999999999999999999999999888766 899999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeEEEEEE---cC-CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCC
Q 008844 79 GHRILVSAADKSLTLWDVLKGEKITRIV---LQ-QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
+++|++++.|++|++||+.......... .| ..+.++.|+|++. ...+++++.++.|++||+.++......
T Consensus 484 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~----- 557 (694)
T 3dm0_A 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-QPTIVSASWDKTVKVWNLSNCKLRSTL----- 557 (694)
T ss_dssp SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS-SCEEEEEETTSCEEEEETTTCCEEEEE-----
T ss_pred CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC-cceEEEEeCCCeEEEEECCCCcEEEEE-----
Confidence 9999999999999999986544333221 12 2478899999753 347899999999999999987754332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~ 234 (551)
..|...|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+...|.+++|+|++.+|+++
T Consensus 558 ---------------~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 558 ---------------AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--EANSVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp ---------------CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC--BCSSCEEEEEECSSSSEEEEE
T ss_pred ---------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--cCCCcEEEEEEcCCCcEEEEE
Confidence 123448999999999999999999999999999999988777 566789999999999877776
Q ss_pred eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc-------------ccc-cceeeeeeeEE
Q 008844 235 SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF-------------QDS-ITKMHWKAPCF 300 (551)
Q Consensus 235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-v~~~~~~~~~~ 300 (551)
.++.|+|||+... ..+..+..+ ... ...+.+++++|
T Consensus 621 -~~~~i~iwd~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 670 (694)
T 3dm0_A 621 -TEHGIKIWDLESK-----------------------------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670 (694)
T ss_dssp -ETTEEEEEETTTT-----------------------------EEEEEECCCCC----------------CCCCEEEEEE
T ss_pred -cCCCEEEEECCCC-----------------------------CChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence 4667999993221 111111100 000 00011348899
Q ss_pred cCCCCEEEEeeccCCcceEEEEecC
Q 008844 301 SGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 301 s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
||+|++|++|+. ||.|+||++.
T Consensus 671 spdg~~l~sgs~---Dg~i~iW~i~ 692 (694)
T 3dm0_A 671 SADGSTLFSGYT---DGVIRVWGIG 692 (694)
T ss_dssp CTTSSEEEEEET---TSEEEEEEC-
T ss_pred cCCCCEEEEEcC---CCeEEEEecc
Confidence 999999999999 9999999974
No 90
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=257.69 Aligned_cols=261 Identities=13% Similarity=0.186 Sum_probs=219.3
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.|.|||..+++....+.. |.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++
T Consensus 55 ~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~ 129 (369)
T 3zwl_B 55 SASVWYSLNGERLGTLDG--HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGNY 129 (369)
T ss_dssp CEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSSE
T ss_pred EEEEEeCCCchhhhhhhh--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEccCCCE
Confidence 478999998887766654 88999999999999999999999999999999999988886 3789999999999999
Q ss_pred EEEEeCC-----CCEEEEEcCCCe-----------EEEEEEcCC---CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 82 ILVSAAD-----KSLTLWDVLKGE-----------KITRIVLQQ---TPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 82 l~s~s~d-----g~i~vwd~~~~~-----------~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
|++++.+ +.|.+||+..+. .+..+..+. .+..+.|+|++. ++++++.++.+.+||+.+
T Consensus 130 l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 130 FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK---YIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC---EEEEEETTSEEEEEETTT
T ss_pred EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC---EEEEEcCCCEEEEEECCC
Confidence 9999998 999999987653 222333332 678889999754 788999999999999998
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEE
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNI 222 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l 222 (551)
.......... +...|.+++|+|++.+|++++.+|.|++||+.+++.+..+ .+...+.++
T Consensus 207 ~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~ 265 (369)
T 3zwl_B 207 NYEYVDSIDL-------------------HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY--ETDCPLNTA 265 (369)
T ss_dssp TTEEEEEEEC-------------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEE
T ss_pred CcEeEEEEec-------------------CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee--cCCCCceeE
Confidence 4333222211 2238999999999999999999999999999999998888 478899999
Q ss_pred EEeeCCCEEEEeeCCC--------------eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc
Q 008844 223 VFSRNGQYLLTNSNDR--------------TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD 288 (551)
Q Consensus 223 ~~s~~g~~l~t~s~Dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (551)
+|+|++++|++++.++ .|++|| ......+..+..|..
T Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d-----------------------------~~~~~~~~~~~~~~~ 316 (369)
T 3zwl_B 266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH-----------------------------KIFEEEIGRVQGHFG 316 (369)
T ss_dssp EECSSSSEEEEEECCC-------------CEEEEEE-----------------------------TTTCCEEEEEECCSS
T ss_pred EecCCCceEEEeecCCCceEEEEecCCCcceeEEEe-----------------------------cCCCcchhheecccC
Confidence 9999999999999988 788888 222455677778888
Q ss_pred ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce
Q 008844 289 SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL 328 (551)
Q Consensus 289 ~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~ 328 (551)
.|. +++|+|++++|++++. ||.|+||++. +..
T Consensus 317 ~v~-----~~~~s~~~~~l~s~~~---dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 317 PLN-----TVAISPQGTSYASGGE---DGFIRLHHFEKSYF 349 (369)
T ss_dssp CEE-----EEEECTTSSEEEEEET---TSEEEEEEECHHHH
T ss_pred cEE-----EEEECCCCCEEEEEcC---CCeEEEEECccccc
Confidence 887 8999999999999999 9999999998 543
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-30 Score=260.32 Aligned_cols=272 Identities=13% Similarity=0.131 Sum_probs=209.6
Q ss_pred ccCCceeeEeecccccccEEEEEecCCC-CEEEEEeCCCCEEEEEcCCCeEEEEEE---cCCCeeEEEEecCCCCCcEEE
Q 008844 52 FETRGIAKELRDKECVAAITSVCWSKYG-HRILVSAADKSLTLWDVLKGEKITRIV---LQQTPLQARLHPGSSTPSLCL 127 (551)
Q Consensus 52 ~~~~~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~ 127 (551)
+........+.+| ...|++++|+|++ ++|++|+.|+.|+|||+.++.....+. ....+.++.|+|.. ..+++
T Consensus 60 ~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~ 135 (383)
T 3ei3_B 60 LKSYKLHRTASPF--DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN--TNQLF 135 (383)
T ss_dssp HTTCEEEEEECCC--SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE--EEEEE
T ss_pred ccccceEEeccCC--CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC--CCEEE
Confidence 3445556666554 8999999999998 999999999999999999888877776 33468899999942 34899
Q ss_pred EeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE
Q 008844 128 ACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI 207 (551)
Q Consensus 128 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~ 207 (551)
+++.++.+++||+.......+... ..+...+.+++|+|++++|++|+.+|.|++||+ +++.
T Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSVIQVFAKT------------------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp EEETTTEEEEEETTSCEEEEEECC------------------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred EEeCCCEEEEEECCCCceEEEecc------------------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 999999999999996443332211 112237999999999999999999999999999 4666
Q ss_pred EEeeeccCccceEEEEEeeCCC-EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc
Q 008844 208 RALVPVSGAAVIKNIVFSRNGQ-YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF 286 (551)
Q Consensus 208 ~~~~~~~~~~~i~~l~~s~~g~-~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (551)
+..+. .|...|.+++|+|+++ +|++++.|+.|++||+.... ....++..+ .|
T Consensus 197 ~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------------------~~~~~~~~~-~~ 249 (383)
T 3ei3_B 197 IFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK-------------------------DKNSYIAEM-PH 249 (383)
T ss_dssp EEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCC-------------------------STTCEEEEE-EC
T ss_pred EEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCC-------------------------cccceEEEe-cC
Confidence 66665 7899999999999999 89999999999999932210 002233333 57
Q ss_pred ccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-CceeEEEecCC-----------------CceEEEEEecC
Q 008844 287 QDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK-----------------EALIDLAWHPV 347 (551)
Q Consensus 287 ~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~-----------------~~v~~l~~sp~ 347 (551)
...+. +++|+| +|++|++++. |+.|+|||+. +..+..+.+|. ..+..++|+|+
T Consensus 250 ~~~v~-----~~~~s~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d 321 (383)
T 3ei3_B 250 EKPVN-----AAYFNPTDSTKLLTTDQ---RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD 321 (383)
T ss_dssp SSCEE-----EEEECTTTSCEEEEEES---SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC
T ss_pred CCceE-----EEEEcCCCCCEEEEEcC---CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCC
Confidence 77776 899999 9999999999 9999999999 77777776553 23444666666
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcce--------------eecCCcceece
Q 008844 348 HPIIVSVSLTGWVYIWAKDYTENWS--------------AFAPDFKELEE 383 (551)
Q Consensus 348 ~~~l~s~s~dg~i~iW~~~~~~~~~--------------~~spd~~~l~~ 383 (551)
+.+ +++.||.|+||++.+++... +|+|++..|+.
T Consensus 322 g~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 322 DQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp TTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred ccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 666 66789999999998765322 56666666543
No 92
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.3e-29 Score=253.28 Aligned_cols=312 Identities=16% Similarity=0.125 Sum_probs=239.6
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLL-AAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~l-atg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
.|.+||..+++....+. ++..+.+++|+|+|++| ++++.++.|++||+.+++.+..+..+ ..|.+++|+|+++
T Consensus 13 ~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~spdg~ 86 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIP---VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---SSPQGVAVSPDGK 86 (391)
T ss_dssp EEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSS
T ss_pred EEEEEECCCCeEEEEee---cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---CCccceEECCCCC
Confidence 47899999886655544 45668999999999977 67778999999999999998888754 4899999999999
Q ss_pred EEEEEe-CCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 81 RILVSA-ADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 81 ~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
+|++++ .++.|++||+.+++.+..+..+..+..+.|+|++. .+++++..++.+++||+.+++........
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~------- 157 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGK--KLYVTNNGDKTVSVINTVTKAVINTVSVG------- 157 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEECC-------
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCC--EEEEEeCCCCEEEEEECCCCcEEEEEecC-------
Confidence 886555 57999999999999999999888899999999864 35578888999999999988765432111
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCCCEE-EEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee---
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYGDLV-YVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS--- 235 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s--- 235 (551)
..+.+++|+|++++| ++++.++.|++||+.+++.+..+ .+...+.+++|+|++++|++++
T Consensus 158 --------------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 158 --------------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp --------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSEEEEEEECTTSSEEEEEEECS
T ss_pred --------------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE--ecCCCccceEECCCCCEEEEEecCc
Confidence 157899999999887 56678899999999999888777 4667899999999999999888
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEE-EeeccC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVI-AGSASK 314 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~-~gs~~~ 314 (551)
.++.|++||+. ....+..+..+.. +. .++|+|+|++|+ +++.
T Consensus 222 ~~~~v~~~d~~-----------------------------~~~~~~~~~~~~~-~~-----~~~~s~dg~~l~~s~~~-- 264 (391)
T 1l0q_A 222 YFNTVSMIDTG-----------------------------TNKITARIPVGPD-PA-----GIAVTPDGKKVYVALSF-- 264 (391)
T ss_dssp SCCEEEEEETT-----------------------------TTEEEEEEECCSS-EE-----EEEECTTSSEEEEEETT--
T ss_pred CCCcEEEEECC-----------------------------CCeEEEEEecCCC-cc-----EEEEccCCCEEEEEcCC--
Confidence 68999999922 1333444444332 22 789999999884 5566
Q ss_pred CcceEEEEecC-CceeEEEecCCCceE---EEE------------EecCC----------CeEEEEcCCCcEEEEecCCC
Q 008844 315 GEHKIYIWDRA-GYLVKILEGPKEALI---DLA------------WHPVH----------PIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 315 ~dg~I~iwd~~-~~~~~~l~~h~~~v~---~l~------------~sp~~----------~~l~s~s~dg~i~iW~~~~~ 368 (551)
++.|++||+. ++++..+..|..+.. .+. |+.+. -.+...+.|..+++|++..+
T Consensus 265 -d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 265 -XNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp -TTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred -CCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCC
Confidence 8999999999 999888887765421 122 22221 23555666889999999765
Q ss_pred Ccc------eeecCCcceec
Q 008844 369 ENW------SAFAPDFKELE 382 (551)
Q Consensus 369 ~~~------~~~spd~~~l~ 382 (551)
..- ..|+|+|.+..
T Consensus 344 ~~~~~~~~~~~~~~~g~y~~ 363 (391)
T 1l0q_A 344 SSSKKQNPTHTYSETGIYTV 363 (391)
T ss_dssp CEECSSSCEECCSSCEEEEE
T ss_pred cccCcCCCeEEeCCCceEEE
Confidence 421 25666665443
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.7e-31 Score=259.94 Aligned_cols=282 Identities=13% Similarity=0.149 Sum_probs=214.4
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCC---CCEEEEEeCCCeEEEEeccCCc-eeeEeecccccccEEEEE---
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRR---GTLLAAGCSDGSCVIWDFETRG-IAKELRDKECVAAITSVC--- 74 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~d---g~~latg~~dg~I~iwd~~~~~-~~~~~~~~~h~~~V~~l~--- 74 (551)
.|.|||..+++..... ...|...|++++|+|+ |.+|++|+.||.|++||+.+++ .+..+.+| ...|.++.
T Consensus 45 ~v~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~ 121 (357)
T 3i2n_A 45 VIQLYEIQHGDLKLLR-EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGH--KEIINAIDGIG 121 (357)
T ss_dssp EEEEEEECSSSEEEEE-EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCC--SSCEEEEEEES
T ss_pred EEEEEeCCCCccccee-eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEec--ccceEEEeecc
Confidence 4789999888754333 3357899999999998 7999999999999999999888 77888765 89999995
Q ss_pred ---ecCCCCEEEEEeCCCCEEEEEcCCCe-EEEEEEcCC-----CeeEEEEec-CCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 75 ---WSKYGHRILVSAADKSLTLWDVLKGE-KITRIVLQQ-----TPLQARLHP-GSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 75 ---~s~~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~-----~~~~~~~~p-~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
|+|++++|++++.|+.|++||+.++. .+..+..+. .+..+.|.+ -.....++++++.++.+++||+.++.
T Consensus 122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence 57889999999999999999999886 666665433 466677433 11224589999999999999999987
Q ss_pred eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee---CCCEEEEEecCceEEEEECCCCcEEEeee----ccCcc
Q 008844 145 TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK---YGDLVYVGNSKGEILVIDHKSNQIRALVP----VSGAA 217 (551)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~g~~dg~i~i~d~~~~~~~~~~~----~~~~~ 217 (551)
...... +...+.+++|+| ++.+|++|+.+|.|++||+++++....+. ..|..
T Consensus 202 ~~~~~~---------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 202 LRWETN---------------------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS 260 (357)
T ss_dssp EEEEEE---------------------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred eeeecC---------------------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence 643311 122899999999 89999999999999999998765533221 26889
Q ss_pred ceEEEEEeeCCC-EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 218 VIKNIVFSRNGQ-YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 218 ~i~~l~~s~~g~-~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
.|++++|+|+++ +|++++.||.|++||+..+...... . ..+...........+..+..|...|.
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~-------~~g~~~~~~~~~~~~~~~~~~~~~v~----- 325 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK---D-------SEGIEMGVAGSVSLLQNVTLSTQPIS----- 325 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C---C-------TTSCCCCCCCEEEEEEEEECCSSCEE-----
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc---c-------CCCCccccccccceeeccccCCCCee-----
Confidence 999999999998 8999999999999994332110000 0 00000000011245667777888887
Q ss_pred eeEEcCCCCEEE-EeeccCCcceEEEEecC
Q 008844 297 APCFSGDGEWVI-AGSASKGEHKIYIWDRA 325 (551)
Q Consensus 297 ~~~~s~dg~~l~-~gs~~~~dg~I~iwd~~ 325 (551)
+++|+|+|++|+ +++. |+.|+||++.
T Consensus 326 ~~~~s~~~~~l~~s~~~---d~~i~iw~~~ 352 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSF---DQTVRVLIVT 352 (357)
T ss_dssp EEEECSSSTTEEEEEET---TSEEEEEEEC
T ss_pred EEEEcCCCCeEEEEecC---CCcEEEEECC
Confidence 899999999998 7998 9999999987
No 94
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.6e-30 Score=260.24 Aligned_cols=287 Identities=12% Similarity=0.117 Sum_probs=228.5
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeec---ccccccEEEEEecCCCCEEEEEeCCCCEEEEEc
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRD---KECVAAITSVCWSKYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~---~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~ 96 (551)
+.....+.+++|+|++.++++++.++.|++||+.+++....+.. .+|...|.+++|+++++++++++.|+.|++||+
T Consensus 119 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 119 FKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp EECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred EcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 33445677999999888888888899999999999988764321 245889999999999999999999999999999
Q ss_pred CCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.+++.+..+..+. .+..+.|+|++. .+++++..++.+.+||+.++........ ...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~---------------------~~~ 255 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRD--LVYCSNWISEDISVIDRKTKLEIRKTDK---------------------IGL 255 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTT--EEEEEETTTTEEEEEETTTTEEEEECCC---------------------CSE
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCC--EEEEEecCCCcEEEEECCCCcEEEEecC---------------------CCC
Confidence 9999998887654 578899999764 3456666899999999998765432111 116
Q ss_pred ceEEEEeeCCCEEEEEe--------cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEE-EEeeCCCeEEEEeCc
Q 008844 176 PTAACFNKYGDLVYVGN--------SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYL-LTNSNDRTIRIYDNL 246 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~--------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~t~s~Dg~i~iwd~~ 246 (551)
+.+++|+|+|++|++++ .+|.|++||+.+++.+..+ .+...+.+++|+|+++.| ++++.++.|++||+.
T Consensus 256 ~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 88999999999999988 4889999999999887776 566689999999999755 566889999999922
Q ss_pred CCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCC-----------
Q 008844 247 LPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKG----------- 315 (551)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~----------- 315 (551)
+...+..+. +...+. .++|+|+|++|++++....
T Consensus 334 -----------------------------~~~~~~~~~-~~~~~~-----~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 334 -----------------------------EKKVQKSIP-VFDKPN-----TIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp -----------------------------TTEEEEEEE-CSSSEE-----EEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred -----------------------------CCcEEEEec-CCCCCC-----eEEEcCCCCEEEEEecCCCccccccccccc
Confidence 122333332 333344 8899999999998886321
Q ss_pred -cceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcC-CCcEEEEecCC
Q 008844 316 -EHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSL-TGWVYIWAKDY 367 (551)
Q Consensus 316 -dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~~ 367 (551)
||.|++||+. ++.+..+.. ...+.+++|+|++++|++++. |+.|++|+++.
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 3699999999 888888876 457999999999999988775 99999999863
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.3e-31 Score=270.27 Aligned_cols=292 Identities=12% Similarity=0.128 Sum_probs=221.5
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeccCCceeeEe-ecccccccEEEEEecC-CCCEEEEEeCCCCEEEEEcCC---Ce---E
Q 008844 30 AFNRRGTLLAAGCSDGSCVIWDFETRGIAKEL-RDKECVAAITSVCWSK-YGHRILVSAADKSLTLWDVLK---GE---K 101 (551)
Q Consensus 30 ~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~-~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~---~~---~ 101 (551)
.|+|++..+++++ .|+. +++.+..+ .+ |...|++++|+| ++++|++|+.|++|+|||+.+ +. .
T Consensus 34 ~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL-RGKLIATLMEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC-CCCEEEEECTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc------cccc-cceEEeeeccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 4788898888765 4874 47777777 44 589999999999 999999999999999999876 43 3
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC---CCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLS---TGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
...+.....+.++.|+|++. ++++++.++.+++||+. .+..........-. ... .....+...+.+
T Consensus 105 ~~~~~h~~~v~~~~~~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~--~~~------~~~~~~~~~~~~ 173 (437)
T 3gre_A 105 SLTYDCSSTVTQITMIPNFD---AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIR--KIN------LKNFGKNEYAVR 173 (437)
T ss_dssp SEEEECSSCEEEEEECTTSS---EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEE--EEE------GGGGSSCCCEEE
T ss_pred eeeccCCCCEEEEEEeCCCC---EEEEEeCCCEEEEEEeccccCCceeeccccceeE--EEE------ccCcccccCceE
Confidence 44445566799999998654 89999999999999995 44332211100000 000 000001225677
Q ss_pred EE--EeeCCCEEEEEecCceEEEEECCCCcEEEeeecc-CccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 179 AC--FNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS-GAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 179 ~~--~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
+. +++++.+|++|+.||.|++||+++++.+..+... |...|++++|+|++++|++++.||.|++||+.
T Consensus 174 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--------- 244 (437)
T 3gre_A 174 MRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR--------- 244 (437)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT---------
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC---------
Confidence 77 5688999999999999999999999998888633 78999999999999999999999999999932
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeec-ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEe
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFR-EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
...++..+. .+...|..+.| +..|++++.+|++|+. |+.|+|||+. ++++..+.
T Consensus 245 --------------------~~~~~~~~~~~~~~~v~~~~~-~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 245 --------------------FNVLIRSWSFGDHAPITHVEV-CQFYGKNSVIVVGGSS---KTFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp --------------------TTEEEEEEBCTTCEEEEEEEE-CTTTCTTEEEEEEEST---TEEEEEEETTTTEEEEEEE
T ss_pred --------------------CccEEEEEecCCCCceEEEEe-ccccCCCccEEEEEcC---CCcEEEEEcCCCcEEEEEE
Confidence 234455443 55556662222 1255567889999999 9999999999 88888777
Q ss_pred cC--------------------------CCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceeec
Q 008844 334 GP--------------------------KEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFA 375 (551)
Q Consensus 334 ~h--------------------------~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~s 375 (551)
+| ...|++++|+ ++++|++++.||.|++|++.+++....+.
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred cCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 54 4558889999 77899999999999999999887665544
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=2.4e-31 Score=269.80 Aligned_cols=268 Identities=14% Similarity=0.136 Sum_probs=202.9
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
+|+|||..+++....+....|.+.|++|+|+| ++++|++|+.||+|+|||+.++........+.+...+.+++|+|++.
T Consensus 143 ~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (435)
T 4e54_B 143 DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR 222 (435)
T ss_dssp CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT
T ss_pred EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC
Confidence 58899999888777777667999999999998 68999999999999999998766554554555566789999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
+|++|+.||.|++||+.. +.+..+..|. .+.++.|+|.+ ..++++++.|+.|++||++.........
T Consensus 223 ~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~--~~~~~s~s~d~~v~iwd~~~~~~~~~~~--------- 290 (435)
T 4e54_B 223 MVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCC--DWFLATASVDQTVKIWDLRQVRGKASFL--------- 290 (435)
T ss_dssp EEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTC--SSEEEEEETTSBCCEEETTTCCSSSCCS---------
T ss_pred EEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCC--ceEEEEecCcceeeEEecccccccceEE---------
Confidence 999999999999999864 4555555554 58899999976 3488899999999999998765432111
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCc------cceEEEEEeeCCCEEEE
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGA------AVIKNIVFSRNGQYLLT 233 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~------~~i~~l~~s~~g~~l~t 233 (551)
....|...|++++|+|+|.+|++|+.||.|+|||+.++.....+. .|. ..+..+.|+|++.++++
T Consensus 291 --------~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 291 --------YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-PHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp --------BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC-CCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred --------EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe-cccccccccceeEEEEEcCCCCEEEE
Confidence 112345589999999999999999999999999999987765543 222 12334566776666665
Q ss_pred ee------------CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeee-E
Q 008844 234 NS------------NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAP-C 299 (551)
Q Consensus 234 ~s------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~ 299 (551)
++ .++.|++||.. .+..+..+ ..|...|. ++ +
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~-----------------------------~g~~~~~l~~~~~~~v~-----s~~~ 407 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGN-----------------------------SGKMMCQLYDPESSGIS-----SLNE 407 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSS-----------------------------SCCEEEEECCSSCCCCC-----CEEE
T ss_pred EEcCCCCeEEEEecCCCEEEEEECC-----------------------------CCcEEEEEeCCCCCcEE-----EEEE
Confidence 53 34679999821 23334443 35666665 54 6
Q ss_pred EcCCCCEEEEeeccCCcceEEEEecC-Cce
Q 008844 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYL 328 (551)
Q Consensus 300 ~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~ 328 (551)
|+|+|++|++|+ ++.|+||++. ++.
T Consensus 408 fspdg~~lasg~----d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 408 FNPMGDTLASAM----GYHILIWSQQEART 433 (435)
T ss_dssp ECTTSSCEEEEC----SSEEEECCCC----
T ss_pred ECCCCCEEEEEc----CCcEEEEECCcCee
Confidence 999999999876 5789999998 654
No 97
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=1.5e-29 Score=247.54 Aligned_cols=253 Identities=15% Similarity=0.215 Sum_probs=207.7
Q ss_pred cCCceeeEeecccccccEEEEEecCC-CCEEEEEeCCCCEEEEEcCCCe-----EEEEEEcCC-CeeEEEEecCCCCCcE
Q 008844 53 ETRGIAKELRDKECVAAITSVCWSKY-GHRILVSAADKSLTLWDVLKGE-----KITRIVLQQ-TPLQARLHPGSSTPSL 125 (551)
Q Consensus 53 ~~~~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~-~~~~~~~~p~~~~~~~ 125 (551)
++..+..+|.+| .+.|++|+|+|+ +++|+||+.|++|+|||+.++. +...+..|. .+..+.|+|++. +
T Consensus 26 ~~~~l~~tL~GH--~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~---~ 100 (340)
T 4aow_A 26 EQMTLRGTLKGH--NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ---F 100 (340)
T ss_dssp CEEEEEEEECCC--SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS---E
T ss_pred CceEEEEEECCc--cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC---E
Confidence 344555677665 999999999997 6899999999999999987643 455566554 578999999864 8
Q ss_pred EEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC
Q 008844 126 CLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN 205 (551)
Q Consensus 126 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~ 205 (551)
+++++.++.+++|+.............. ..+..+.+++++.+|++|+.||.+++||+...
T Consensus 101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~ 160 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTGTTTRRFVGHT--------------------KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160 (340)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCS--------------------SCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred EEEEcccccceEEeecccceeeeecCCC--------------------CceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence 9999999999999999887655433221 16788899999999999999999999999887
Q ss_pred cEEEeeeccCccceEEEEEeeCC--CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee
Q 008844 206 QIRALVPVSGAAVIKNIVFSRNG--QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF 283 (551)
Q Consensus 206 ~~~~~~~~~~~~~i~~l~~s~~g--~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (551)
.........|...+..++|++++ .++++++.|+.|++||+ .....+..+
T Consensus 161 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~-----------------------------~~~~~~~~~ 211 (340)
T 4aow_A 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-----------------------------ANCKLKTNH 211 (340)
T ss_dssp EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET-----------------------------TTTEEEEEE
T ss_pred ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC-----------------------------CCCceeeEe
Confidence 76555555788999999999865 57889999999999992 225566777
Q ss_pred cccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEE
Q 008844 284 REFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYI 362 (551)
Q Consensus 284 ~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~i 362 (551)
.+|...|+ +++|+|++++|++|+. |+.|+|||+. +.++..+.++ ..|..++|+|++.++ +++.|+.|+|
T Consensus 212 ~~h~~~v~-----~~~~s~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~i 281 (340)
T 4aow_A 212 IGHTGYLN-----TVTVSPDGSLCASGGK---DGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKI 281 (340)
T ss_dssp CCCSSCEE-----EEEECTTSSEEEEEET---TCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEE
T ss_pred cCCCCcEE-----EEEECCCCCEEEEEeC---CCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEE
Confidence 88888887 8999999999999999 9999999999 8888888754 689999999987655 5556999999
Q ss_pred EecCCCC
Q 008844 363 WAKDYTE 369 (551)
Q Consensus 363 W~~~~~~ 369 (551)
|++.+..
T Consensus 282 wd~~~~~ 288 (340)
T 4aow_A 282 WDLEGKI 288 (340)
T ss_dssp EETTTTE
T ss_pred EECCCCe
Confidence 9998653
No 98
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=4.1e-30 Score=254.80 Aligned_cols=261 Identities=12% Similarity=0.118 Sum_probs=211.1
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe--EEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 66 CVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE--KITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 66 h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
|..+|++++|+|++++|++++.|+.|++||+.+++ .+..+..+. .+..+.|+|++. ++++++.++.+++|++.+
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT---EEEEEETTSCEEEEEEET
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC---EEEEEcCCCeEEEEECCC
Confidence 48999999999999999999999999999999987 777887664 578999999754 889999999999999988
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE---EEeeeccCccce
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI---RALVPVSGAAVI 219 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~~~~i 219 (551)
+........ ..+...+.+++|+|++++|++|+.+|.|++||+..+.. ...+...|...|
T Consensus 84 ~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 84 RTWKPTLVI------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp TEEEEEEEC------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred CeeeeeEEe------------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence 764322111 12233899999999999999999999999999998763 344444788999
Q ss_pred EEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeE
Q 008844 220 KNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 299 (551)
.+++|+|++++|++++.|+.|++||+........... ...........++..+..|...+. +++
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~-----~~~ 209 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP-----------TPWGSKMPFGELMFESSSSCGWVH-----GVC 209 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC-----------BTTBSCCCTTCEEEECCCCSSCEE-----EEE
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc-----------cccccccchhhheEecCCCCCeEE-----EEE
Confidence 9999999999999999999999999432110000000 000000112455666667777777 899
Q ss_pred EcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 300 FSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 300 ~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
|+|++++|++++. |+.|++||+. ++++..+..|..+|.+++|+|++.+|+++ .|+.|++|++..
T Consensus 210 ~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 210 FSANGSRVAWVSH---DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ECSSSSEEEEEET---TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ECCCCCEEEEEeC---CCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999999999 9999999999 99999999999999999999999988888 799999999987
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.9e-31 Score=266.09 Aligned_cols=281 Identities=11% Similarity=0.028 Sum_probs=213.1
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
...|.+++|||||++||+++.|++|+ |...++ .+. +|...|.+++|+|+| .++.+.+|+..... +
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~--gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DIN--CNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L 79 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCS--SBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc---eec--CCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence 46799999999999999999999999 655444 444 459999999999999 56766666643222 2
Q ss_pred EEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q 008844 103 TRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN 182 (551)
Q Consensus 103 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 182 (551)
..+.....+..++|+|++. .+++++.+|.+++|+... .... .. ... ......+.+++|+
T Consensus 80 ~~~~~~~~V~~vawSPdG~---~LAs~s~dg~V~iwd~~~--~l~~-l~-~~~--------------~~~~~sv~svafS 138 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDD---WMAVLSNNGNVSVFKDNK--MLTN-LD-SKG--------------NLSSRTYHCFEWN 138 (588)
T ss_dssp STTSCSCCEEEEEECSSSS---CEEEEETTSCEEEEETTE--EEEE-CC-CSS--------------CSTTTCEEEEEEC
T ss_pred eecCCCCcEEEEEECCCCC---EEEEEeCCCcEEEEeCCc--eeee-cc-CCC--------------ccccccEEEEEEc
Confidence 2223345689999999876 699999999999999544 1111 11 000 0001268999999
Q ss_pred eCCCEEEEEecCceEEEEECCCCcE-------EEeee---ccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcccc
Q 008844 183 KYGDLVYVGNSKGEILVIDHKSNQI-------RALVP---VSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 183 ~~g~~l~~g~~dg~i~i~d~~~~~~-------~~~~~---~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
|+|++|++|+.||+|+|||+.++.. +..+. .+|...|.+++|+|+| |++++.|++|++|++....
T Consensus 139 PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~--- 213 (588)
T 2j04_A 139 PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS--- 213 (588)
T ss_dssp SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS---
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc---
Confidence 9999999999999999999998852 45542 3677899999999999 8888999999999932110
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeE
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVK 330 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~ 330 (551)
.......+ ..|...|. +++|+ |++||+++ ++.|++|++. +....
T Consensus 214 -----------------------~~~~~~tL~~~h~~~V~-----svaFs--g~~LASa~----~~tIkLWd~~~~~~~~ 259 (588)
T 2j04_A 214 -----------------------HQPVSRMIQNASRRKIT-----DLKIV--DYKVVLTC----PGYVHKIDLKNYSISS 259 (588)
T ss_dssp -----------------------SCCCEEEEECCCSSCCC-----CEEEE--TTEEEEEC----SSEEEEEETTTTEEEE
T ss_pred -----------------------cccceeeecccccCcEE-----EEEEE--CCEEEEEe----CCeEEEEECCCCeEEE
Confidence 00012234 35667777 88898 68999886 5899999999 54434
Q ss_pred EEecCCCceEEEEE--ecCCCeEEEEcCCCcEEEEecCCCCcceeecCCcceece
Q 008844 331 ILEGPKEALIDLAW--HPVHPIIVSVSLTGWVYIWAKDYTENWSAFAPDFKELEE 383 (551)
Q Consensus 331 ~l~~h~~~v~~l~~--sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~spd~~~l~~ 383 (551)
...+|.+.|.+++| +|++..|++++.||+ ++|..+. .+|+||+..++.
T Consensus 260 ~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~----~~~spd~~l~a~ 309 (588)
T 2j04_A 260 LKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE----LHVTADNIIAPY 309 (588)
T ss_dssp EECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----EEEECCCSSHHH
T ss_pred EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----EEECCCceEEEE
Confidence 44389999999999 999999999999999 9999883 348888887765
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=4.5e-30 Score=257.74 Aligned_cols=243 Identities=14% Similarity=0.213 Sum_probs=194.0
Q ss_pred eEEEEEEcCCCCEE-EEEeCCCeEEEEeccCCc----eeeEeecccccccEEEEEecC-CCCEEEEEeCCCCEEEEEcCC
Q 008844 25 VMKCIAFNRRGTLL-AAGCSDGSCVIWDFETRG----IAKELRDKECVAAITSVCWSK-YGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 25 ~V~~l~fs~dg~~l-atg~~dg~I~iwd~~~~~----~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~ 98 (551)
...+++++|+...+ ++|+.+|.|+||++.... .+..+. +|...|++++|+| ++++|++|+.|++|+|||+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~--~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC--GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC--CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe--cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 34568888886544 457889999999996542 233444 4599999999999 899999999999999999988
Q ss_pred Ce-------EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC
Q 008844 99 GE-------KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT 171 (551)
Q Consensus 99 ~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (551)
+. .+..+..
T Consensus 114 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 129 (402)
T 2aq5_A 114 GGLVLPLREPVITLEG---------------------------------------------------------------- 129 (402)
T ss_dssp TCCSSCBCSCSEEEEC----------------------------------------------------------------
T ss_pred CCCccccCCceEEecC----------------------------------------------------------------
Confidence 73 2222222
Q ss_pred CCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeee-ccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCc
Q 008844 172 PPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVP-VSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPL 249 (551)
Q Consensus 172 ~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~ 249 (551)
|...|++++|+|++ ++|++|+.||.|++||+.+++.+..+. ..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--- 206 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR--- 206 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT---
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC---
Confidence 22289999999998 799999999999999999999888773 3789999999999999999999999999999932
Q ss_pred cccchhhhhhhccCCCCCcceeeeeccceeeeee-cccccc-cceeeeeeeEEcCCCCEEEEe---eccCCcceEEEEec
Q 008844 250 KNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDS-ITKMHWKAPCFSGDGEWVIAG---SASKGEHKIYIWDR 324 (551)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~s~dg~~l~~g---s~~~~dg~I~iwd~ 324 (551)
....+..+ ..|... +. .++|+|++++|++| +. ++.|++||+
T Consensus 207 --------------------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~g~~~~~---d~~i~iwd~ 252 (402)
T 2aq5_A 207 --------------------------KGTVVAEKDRPHEGTRPV-----HAVFVSEGKILTTGFSRMS---ERQVALWDT 252 (402)
T ss_dssp --------------------------TTEEEEEEECSSCSSSCC-----EEEECSTTEEEEEEECTTC---CEEEEEEET
T ss_pred --------------------------CCceeeeeccCCCCCcce-----EEEEcCCCcEEEEeccCCC---CceEEEEcC
Confidence 23445555 455554 44 78999999999999 56 899999999
Q ss_pred C-Cce-eEEEe-cCCCceEEEEEecCCCeEEE-EcCCCcEEEEecCCCCc
Q 008844 325 A-GYL-VKILE-GPKEALIDLAWHPVHPIIVS-VSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 325 ~-~~~-~~~l~-~h~~~v~~l~~sp~~~~l~s-~s~dg~i~iW~~~~~~~ 370 (551)
. +.. +.... .|...|.+++|+|++.+|++ ++.||.|++|++.+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 9 443 44433 47788999999999998875 55799999999998763
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=5.8e-30 Score=260.50 Aligned_cols=269 Identities=12% Similarity=0.153 Sum_probs=199.9
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe-----------EEEEEEcC-------------CCeeEEEEecCCC
Q 008844 66 CVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-----------KITRIVLQ-------------QTPLQARLHPGSS 121 (551)
Q Consensus 66 h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~~-------------~~~~~~~~~p~~~ 121 (551)
|...|++++|+|+|++|++|+.||.|+||++.++. .+..+..| ..+..+.|+|++.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 47899999999999999999999999999998877 47777777 5588999999752
Q ss_pred CCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC-CCC-------------------CCCCCCCCCCCceEEEE
Q 008844 122 TPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP-SSR-------------------NKYSDGTPPFTPTAACF 181 (551)
Q Consensus 122 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~~~~~~i~~~~~ 181 (551)
...+++++.++.+++|++..+.................. ... .......|...|++++|
T Consensus 107 -~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 107 -AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp -SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred -cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 247899999999999999876543221111110000000 000 00112456678999999
Q ss_pred eeCCCEEEEEecCceEEEEECCC-CcEEEee------eccCccceEEEEEeeCC-CEEEEeeCCCeEEEEeCcCCccccc
Q 008844 182 NKYGDLVYVGNSKGEILVIDHKS-NQIRALV------PVSGAAVIKNIVFSRNG-QYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 182 s~~g~~l~~g~~dg~i~i~d~~~-~~~~~~~------~~~~~~~i~~l~~s~~g-~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
+|++++|++| .||.|++||+.+ +..+..+ ...|...|++++|+|++ .+|++++.||.|++||+......
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-- 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC-- 262 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS--
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc--
Confidence 9999999999 799999999994 4444432 22688999999999998 99999999999999994322100
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecccc------------cccceeeeeeeEEcCCCCEEEEeeccCCcceEEE
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ------------DSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYI 321 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~i 321 (551)
...+..+..+. ..+. +++|+|+|++|++++. +.|+|
T Consensus 263 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~g~~l~~~~~----~~v~i 310 (447)
T 3dw8_B 263 -----------------------DRHSKLFEEPEDPSNRSFFSEIISSIS-----DVKFSHSGRYMMTRDY----LSVKV 310 (447)
T ss_dssp -----------------------CTTCEEECCC-----CCHHHHHTTCEE-----EEEECTTSSEEEEEES----SEEEE
T ss_pred -----------------------cceeeEeccCCCccccccccccCceEE-----EEEECCCCCEEEEeeC----CeEEE
Confidence 00023333333 3555 8999999999999884 89999
Q ss_pred EecC--CceeEEEecCCCc---------------eEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 322 WDRA--GYLVKILEGPKEA---------------LIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 322 wd~~--~~~~~~l~~h~~~---------------v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
||+. +.++..+.+|... +..++|+|++++|++++.||.|+||++.+++.
T Consensus 311 wd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 311 WDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp EETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred EeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 9998 7888889888642 33499999999999999999999999988654
No 102
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.9e-29 Score=248.50 Aligned_cols=273 Identities=12% Similarity=0.144 Sum_probs=219.9
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE-EEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEE
Q 008844 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI-LVSAADKSLTLWDVLKGEKITRIVLQQTPLQA 114 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 114 (551)
.++++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.|++|++||+.+++.+..+..+..+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG---SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC---CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce
Confidence 46888999999999999999998888765 458999999999987 56668999999999999999999988899999
Q ss_pred EEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEE-EEEec
Q 008844 115 RLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLV-YVGNS 193 (551)
Q Consensus 115 ~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~g~~ 193 (551)
.|+|++. .+++++..++.+.+||+.+++....... ...+.+++|+|+|++| ++++.
T Consensus 80 ~~spdg~--~l~~~~~~~~~v~v~d~~~~~~~~~~~~---------------------~~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 80 AVSPDGK--QVYVTNMASSTLSVIDTTSNTVAGTVKT---------------------GKSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp EECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEEC---------------------SSSEEEEEECTTSSEEEEEETT
T ss_pred EECCCCC--EEEEEECCCCEEEEEECCCCeEEEEEeC---------------------CCCcceEEECCCCCEEEEEeCC
Confidence 9999864 3456666779999999998876543211 1167899999999977 67778
Q ss_pred CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEE-EEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceee
Q 008844 194 KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYL-LTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKM 272 (551)
Q Consensus 194 dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (551)
++.|++||+.+++.+..+. ....+.+++|+|++++| ++++.++.|++||+..
T Consensus 137 ~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~------------------------- 189 (391)
T 1l0q_A 137 DKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT------------------------- 189 (391)
T ss_dssp TTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-------------------------
T ss_pred CCEEEEEECCCCcEEEEEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-------------------------
Confidence 9999999999999888774 34567999999999987 5677899999999321
Q ss_pred eeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeE
Q 008844 273 KMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPII 351 (551)
Q Consensus 273 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l 351 (551)
..+...+. +...+. .++|+|+|++|++++....++.|++||+. ++.+..+..|. .+.+++|+|++++|
T Consensus 190 ----~~~~~~~~-~~~~~~-----~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l 258 (391)
T 1l0q_A 190 ----NSVIDTVK-VEAAPS-----GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKV 258 (391)
T ss_dssp ----TEEEEEEE-CSSEEE-----EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEE
T ss_pred ----CeEEEEEe-cCCCcc-----ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEE
Confidence 22233332 223333 78999999999998832127999999999 88888888765 57899999999977
Q ss_pred -EEEcCCCcEEEEecCCCCcce
Q 008844 352 -VSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 352 -~s~s~dg~i~iW~~~~~~~~~ 372 (551)
++++.|+.|++|++.+++...
T Consensus 259 ~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 259 YVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEE
T ss_pred EEEcCCCCEEEEEECCCCcEEE
Confidence 677889999999999876543
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.6e-29 Score=243.28 Aligned_cols=262 Identities=14% Similarity=0.198 Sum_probs=214.2
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.|+|||+.+++....+....|...|++++|+|+|++||+|+.||+|+||++.+++.+..+.+| ...+.++.+ ++.+
T Consensus 46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h--~~~~~~~~~--~~~~ 121 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH--SARVGSLSW--NSYI 121 (318)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEE--ETTE
T ss_pred EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCc--cceEEEeec--CCCE
Confidence 378999999998888876667789999999999999999999999999999999999999876 788877665 4679
Q ss_pred EEEEeCCCCEEEEEcCCC-eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKG-EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI 159 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 159 (551)
|++++.++.+++|+...+ ..+..+..+. .+..+.+.+.+. ++++++.++.+++||+.+++........
T Consensus 122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~------- 191 (318)
T 4ggc_A 122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR---HLASGGNDNLVNVWPSAPGEGGWVPLQT------- 191 (318)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS---EEEEEETTSCEEEEESSCBTTBSCCSEE-------
T ss_pred EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC---EEEEEecCcceeEEECCCCcccccceee-------
Confidence 999999999999998776 4455556554 466777777654 8999999999999999887643222111
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCCCEE---EEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee-
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYGDLV---YVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS- 235 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l---~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s- 235 (551)
...+...+.++++++.+..+ ++++.++.|++||.......... .+...+..+.|++++..+++++
T Consensus 192 ---------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 192 ---------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp ---------ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEEC
T ss_pred ---------ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeeeeeecccccceEEEEE
Confidence 11223378899999887433 35667899999999999887776 6778899999999999887654
Q ss_pred -CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC
Q 008844 236 -NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK 314 (551)
Q Consensus 236 -~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~ 314 (551)
.|+.|+|||+ ....++..+.+|...|+ +++|+|+|++|++|+.
T Consensus 261 ~~d~~i~iwd~-----------------------------~~~~~~~~l~gH~~~V~-----~l~~spdg~~l~S~s~-- 304 (318)
T 4ggc_A 261 FAQNQLVIWKY-----------------------------PTMAKVAELKGHTSRVL-----SLTMSPDGATVASAAA-- 304 (318)
T ss_dssp TTTCCEEEEET-----------------------------TTCCEEEEECCCSSCEE-----EEEECTTSSCEEEEET--
T ss_pred cCCCEEEEEEC-----------------------------CCCcEEEEEcCCCCCEE-----EEEEcCCCCEEEEEec--
Confidence 7999999992 23566788889999988 8999999999999999
Q ss_pred CcceEEEEecC
Q 008844 315 GEHKIYIWDRA 325 (551)
Q Consensus 315 ~dg~I~iwd~~ 325 (551)
|+.|+|||+.
T Consensus 305 -D~~v~iWd~~ 314 (318)
T 4ggc_A 305 -DETLRLWRCF 314 (318)
T ss_dssp -TTEEEEECCS
T ss_pred -CCeEEEEECC
Confidence 9999999986
No 104
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.4e-29 Score=239.03 Aligned_cols=247 Identities=18% Similarity=0.139 Sum_probs=205.3
Q ss_pred ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC-CCeeEEEEecCCCCCcEEEEeeCCCC
Q 008844 56 GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ-QTPLQARLHPGSSTPSLCLACPLSSA 134 (551)
Q Consensus 56 ~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~ 134 (551)
+....+.+| ...|++++| +++.+|++++.||.|++||+.++.....+..+ ..+..+.|+|++. ++++++.++.
T Consensus 9 ~~~~~l~~h--~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~ 82 (313)
T 3odt_A 9 QLSATLKGH--DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE---LLLFGGKDTM 82 (313)
T ss_dssp EEEEEECCC--SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT---EEEEEETTSC
T ss_pred HHHHHhhCC--CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC---EEEEecCCCe
Confidence 566777665 999999999 89999999999999999999999888877765 4588999999754 8999999999
Q ss_pred cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc
Q 008844 135 PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS 214 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 214 (551)
+.+|++......... .....|...+.+++| ++++|++++.+|.|++|| .+.....+. .
T Consensus 83 i~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~ 140 (313)
T 3odt_A 83 INGVPLFATSGEDPL-----------------YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-A 140 (313)
T ss_dssp EEEEETTCCTTSCC------------------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-C
T ss_pred EEEEEeeecCCCCcc-----------------cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-c
Confidence 999998775421111 111234448899999 577999999999999999 556666665 7
Q ss_pred CccceEEEEEee-CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccce
Q 008844 215 GAAVIKNIVFSR-NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITK 292 (551)
Q Consensus 215 ~~~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 292 (551)
|...|.+++|.| ++.+|++++.|+.|++||. ......+.. +...+.
T Consensus 141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~-------------------------------~~~~~~~~~~~~~~i~- 188 (313)
T 3odt_A 141 HNASVWDAKVVSFSENKFLTASADKTIKLWQN-------------------------------DKVIKTFSGIHNDVVR- 188 (313)
T ss_dssp CSSCEEEEEEEETTTTEEEEEETTSCEEEEET-------------------------------TEEEEEECSSCSSCEE-
T ss_pred CCCceeEEEEccCCCCEEEEEECCCCEEEEec-------------------------------CceEEEEeccCcccEE-
Confidence 899999999999 8999999999999999991 233444444 666666
Q ss_pred eeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 293 MHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 293 ~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
+++|+|++. |++++. ++.|++||+. ++++..+.+|...|++++|+|++ .|++++.||.|++|++.+++..
T Consensus 189 ----~~~~~~~~~-~~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 189 ----HLAVVDDGH-FISCSN---DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLK 259 (313)
T ss_dssp ----EEEEEETTE-EEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEE
T ss_pred ----EEEEcCCCe-EEEccC---CCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCcee
Confidence 889999998 888888 8999999999 99999999999999999999999 6889999999999999887643
No 105
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1.4e-29 Score=242.98 Aligned_cols=204 Identities=17% Similarity=0.300 Sum_probs=166.3
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC--eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG--EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
+|...|++++|+|+|++|++|+.|++|+|||+..+ +.+..+..|
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH---------------------------------- 52 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH---------------------------------- 52 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC----------------------------------
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc----------------------------------
Confidence 45999999999999999999999999999998643 333333322
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC--CCEEEEEecCceEEEEECCCCc--EEEeeeccCccc
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY--GDLVYVGNSKGEILVIDHKSNQ--IRALVPVSGAAV 218 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~~~ 218 (551)
...|.+++|++. +++|++|+.||+|+|||+.+++ .+..+. .|...
T Consensus 53 ------------------------------~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~ 101 (297)
T 2pm7_B 53 ------------------------------EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA-VHSAS 101 (297)
T ss_dssp ------------------------------SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC-CCSSC
T ss_pred ------------------------------cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee-cCCCc
Confidence 228899999763 8999999999999999999874 333343 68899
Q ss_pred eEEEEEeeC--CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 219 IKNIVFSRN--GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 219 i~~l~~s~~--g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
|.+++|+|+ +.+|++++.|++|++||+.... ......+..|...+.
T Consensus 102 v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~---------------------------~~~~~~~~~h~~~v~----- 149 (297)
T 2pm7_B 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG---------------------------TTSPIIIDAHAIGVN----- 149 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS---------------------------CBCCEEEECCSSCEE-----
T ss_pred eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC---------------------------ceeeeeeecccCccc-----
Confidence 999999997 8999999999999999932110 011234566777776
Q ss_pred eeEEcCC-------------CCEEEEeeccCCcceEEEEecC-Cc----eeEEEecCCCceEEEEEecCC---CeEEEEc
Q 008844 297 APCFSGD-------------GEWVIAGSASKGEHKIYIWDRA-GY----LVKILEGPKEALIDLAWHPVH---PIIVSVS 355 (551)
Q Consensus 297 ~~~~s~d-------------g~~l~~gs~~~~dg~I~iwd~~-~~----~~~~l~~h~~~v~~l~~sp~~---~~l~s~s 355 (551)
+++|+|+ +++|++|+. |+.|+|||+. +. +...+.+|...|.+++|+|++ .+|++++
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~---D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp EEEECCCC------------CCEEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcC---CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence 8889986 579999999 9999999998 55 667889999999999999995 7999999
Q ss_pred CCCcEEEEecCCC
Q 008844 356 LTGWVYIWAKDYT 368 (551)
Q Consensus 356 ~dg~i~iW~~~~~ 368 (551)
.|++|+||++...
T Consensus 227 ~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 227 QDRTCIIWTQDNE 239 (297)
T ss_dssp TTSCEEEEEESST
T ss_pred CCCcEEEEEeCCC
Confidence 9999999998763
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-30 Score=250.89 Aligned_cols=270 Identities=13% Similarity=0.069 Sum_probs=206.2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC---------CCe
Q 008844 30 AFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVL---------KGE 100 (551)
Q Consensus 30 ~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~---------~~~ 100 (551)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+.. ++.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 345678899999999999999999999888876 467888999987 9999999999999654 555
Q ss_pred EEEEEEcC--CCeeEEEEec--CCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 101 KITRIVLQ--QTPLQARLHP--GSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 101 ~~~~~~~~--~~~~~~~~~p--~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
.+..+... ..+..+.++| ++ .++++++.++.+++||+.++........ .+...+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------------------~~~~~i 173 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNT---EYFIWADNRGTIGFQSYEDDSQYIVHSA-------------------KSDVEY 173 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---C---CEEEEEETTCCEEEEESSSSCEEEEECC-------------------CSSCCC
T ss_pred eeEEeecCCCCCEEEEEcCCCCCC---CEEEEEeCCCcEEEEECCCCcEEEEEec-------------------CCCCce
Confidence 56666543 3588999999 64 3899999999999999998887433211 122268
Q ss_pred eEEEEeeCCCEEEEEecCceEEEEECCCCcEE-EeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 177 TAACFNKYGDLVYVGNSKGEILVIDHKSNQIR-ALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
++++|+|+|.+|++|+.||.|++||+++++.. ..+...|...|++++|+|++.+|++++ ++.|++||+...
T Consensus 174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~------- 245 (343)
T 3lrv_A 174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD------- 245 (343)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS-------
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC-------
Confidence 99999999999999999999999999999887 666534899999999999999999999 559999994321
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecc---cccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEE
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFRE---FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKI 331 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~ 331 (551)
.++..+.. +...+.. .+++|+|+|++|++++.. ++.|+||++. +.....
T Consensus 246 ----------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 246 ----------------------VGTLAYPTYTIPEFKTGT---VTYDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp ----------------------TTCBSSCCCBC-----CC---EEEEECTTSSEEEEEETT--TTEEEEEEECTTTCSEE
T ss_pred ----------------------Ccceeecccccccccccc---eEEEECCCCCEEEEecCC--CCcEEEEEEcccccceE
Confidence 11111211 2222221 268999999999997752 5789999997 332222
Q ss_pred EecCCCceEEEEEec---CCCeEEEEcCCCcEEEEecCC
Q 008844 332 LEGPKEALIDLAWHP---VHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 332 l~~h~~~v~~l~~sp---~~~~l~s~s~dg~i~iW~~~~ 367 (551)
. .++..++|+| +...|++++.||.+.++-...
T Consensus 299 ~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 299 K----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp E----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred e----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 2 5678889998 888999999999999886543
No 107
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.2e-31 Score=261.50 Aligned_cols=259 Identities=11% Similarity=0.054 Sum_probs=192.9
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC--eEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKG--EKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
..+|++++|+|++++|++++.|+.|+|||+.++ ..+..+..|. .+..+.|+|++. ++++++.++.+++||+.++
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN---RIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC---CEEEEETTSSEEEC-----
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC---EEEEEeCCCeEEEEEcCCC
Confidence 679999999999999999999999999999988 6666666654 588999999854 7899999999999999987
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE---EEeeeccCccceE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI---RALVPVSGAAVIK 220 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~ 220 (551)
...... .....|...|.+++|+|++++|++|+.||.|++||+.+++. ...+...|...|+
T Consensus 88 ~~~~~~-----------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 88 GTWKQT-----------------LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp -CCCCE-----------------EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred Cceeee-----------------eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 611000 01122344899999999999999999999999999998873 5555434899999
Q ss_pred EEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEE
Q 008844 221 NIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCF 300 (551)
Q Consensus 221 ~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 300 (551)
+++|+|++++|++++.|+.|++||+.......... ..... .......++..+ .|...+. +++|
T Consensus 151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~-~~~~~v~-----~~~~ 213 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE--------ASVWG---SRLPFNTVCAEY-PSGGWVH-----AVGF 213 (377)
T ss_dssp EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC--------SCSSC---SCCCEEEEEECC-CCSSSEE-----EEEE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc--------ccccc---cccchhhhhhcc-cCCceEE-----EEEE
Confidence 99999999999999999999999942111000000 00000 000113345555 7777777 8999
Q ss_pred cCCCCEEEEeeccCCcceEEEEecC-Cce----eEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 301 SGDGEWVIAGSASKGEHKIYIWDRA-GYL----VKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 301 s~dg~~l~~gs~~~~dg~I~iwd~~-~~~----~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+|+|++|++++. |+.|+|||+. +.. +..+.+|...|.+++|+|++.+|++++.++.+ +|+..
T Consensus 214 sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 214 SPSGNALAYAGH---DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CTTSSCEEEEET---TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCEEEEEeC---CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999999999999 9999999999 766 78899999999999999999999999866655 66665
No 108
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=9.4e-30 Score=251.47 Aligned_cols=261 Identities=13% Similarity=0.079 Sum_probs=195.8
Q ss_pred ccccccCCCCccc--e------eecccccceEEEEEEcCCCCEEEEEe-----------CCCeEEEEeccCCcee-e---
Q 008844 3 APIIDPLQGDFPE--V------IEEYLEHGVMKCIAFNRRGTLLAAGC-----------SDGSCVIWDFETRGIA-K--- 59 (551)
Q Consensus 3 l~lwd~~~~~~~~--~------l~~~~h~~~V~~l~fs~dg~~latg~-----------~dg~I~iwd~~~~~~~-~--- 59 (551)
|+||+...+.... . +....|...|.|++++ ++.+++|+ .|++|++|++.+.... .
T Consensus 45 i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~ 122 (365)
T 4h5i_A 45 LTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT 122 (365)
T ss_dssp EEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEee
Confidence 6888876443221 1 1111245667777664 56777664 4678999998764321 1
Q ss_pred Ee---ecccccccEEEEEecCCCCEEEEEe--CCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCC
Q 008844 60 EL---RDKECVAAITSVCWSKYGHRILVSA--ADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSA 134 (551)
Q Consensus 60 ~~---~~~~h~~~V~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 134 (551)
.. ....+...+.+++|||||++|++++ .|++|+|||+.+++++..+..+..+..+.|+|++. +++++ .++.
T Consensus 123 ~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~---~l~s~-s~~~ 198 (365)
T 4h5i_A 123 SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGK---VVAYI-TGSS 198 (365)
T ss_dssp EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSS---EEEEE-CSSC
T ss_pred eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCc---eEEec-ccee
Confidence 11 1222345689999999999987654 68999999999999999998888899999999875 45555 4677
Q ss_pred cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc----eEEEEECCCCcEE--
Q 008844 135 PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG----EILVIDHKSNQIR-- 208 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg----~i~i~d~~~~~~~-- 208 (551)
+.+|+..++........ ..+...+.+++|+|++.++++++.++ .+.+|++......
T Consensus 199 ~~~~~~~~~~~~~~~~~------------------~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~ 260 (365)
T 4h5i_A 199 LEVISTVTGSCIARKTD------------------FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL 260 (365)
T ss_dssp EEEEETTTCCEEEEECC------------------CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE
T ss_pred EEEEEeccCcceeeeec------------------CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce
Confidence 88888877765433211 12333799999999999999998887 6889998776542
Q ss_pred --EeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee-ecc
Q 008844 209 --ALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL-FRE 285 (551)
Q Consensus 209 --~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 285 (551)
..+. .|...|++++|+|+|++||+|+.|++|+|||+ ...+++.. +.+
T Consensus 261 ~~~~~~-~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~-----------------------------~~~~~~~~~~~g 310 (365)
T 4h5i_A 261 RSKQVT-NRFKGITSMDVDMKGELAVLASNDNSIALVKL-----------------------------KDLSMSKIFKQA 310 (365)
T ss_dssp EEEEEE-SSCSCEEEEEECTTSCEEEEEETTSCEEEEET-----------------------------TTTEEEEEETTS
T ss_pred eeeeec-CCCCCeEeEEECCCCCceEEEcCCCEEEEEEC-----------------------------CCCcEEEEecCc
Confidence 2232 67889999999999999999999999999992 22455655 468
Q ss_pred cccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 286 FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 286 ~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
|...|+ +++|||||++||+|+. |++|+||++.
T Consensus 311 H~~~V~-----~v~fSpdg~~laS~S~---D~tvrvw~ip 342 (365)
T 4h5i_A 311 HSFAIT-----EVTISPDSTYVASVSA---ANTIHIIKLP 342 (365)
T ss_dssp SSSCEE-----EEEECTTSCEEEEEET---TSEEEEEECC
T ss_pred ccCCEE-----EEEECCCCCEEEEEeC---CCeEEEEEcC
Confidence 999988 9999999999999999 9999999986
No 109
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=7.1e-29 Score=248.92 Aligned_cols=317 Identities=11% Similarity=0.102 Sum_probs=214.1
Q ss_pred CccccccCCCCccceeecc-----------cccceEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCceeeEeeccccccc
Q 008844 2 NAPIIDPLQGDFPEVIEEY-----------LEHGVMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAA 69 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~-----------~h~~~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~ 69 (551)
.|+|||..++.....+... .|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...
T Consensus 67 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~ 143 (408)
T 4a11_B 67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEET 143 (408)
T ss_dssp CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSC
T ss_pred eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCc
Confidence 4789999887665554321 2789999999999 78899999999999999999998888876 3688
Q ss_pred EEEEEecCC---CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 70 ITSVCWSKY---GHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 70 V~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
+.++.|++. +.+|++++.++.|++||+.++..+..+..+. .+.++.|+|++. .++++++.++.+++||++.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~ll~~~~~dg~i~i~d~~~~~~ 221 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--YILATASADSRVKLWDVRRASG 221 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--TEEEEEETTSCEEEEETTCSSC
T ss_pred eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--cEEEEEcCCCcEEEEECCCCCc
Confidence 999999884 4599999999999999999999888887664 578999999763 3788999999999999998764
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec----cCccceEE
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV----SGAAVIKN 221 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~----~~~~~i~~ 221 (551)
............ ..........+...|.+++|+|++++|++++.||.|++||+.+++....+.. .....+..
T Consensus 222 ~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 297 (408)
T 4a11_B 222 CLITLDQHNGKK----SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF 297 (408)
T ss_dssp CSEECCTTTTCS----CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCC
T ss_pred cccccccccccc----ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccccccee
Confidence 333322211110 0111122244566899999999999999999999999999999876443321 11122222
Q ss_pred EEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 222 IVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 222 l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
......+..+++++.++.|++||+ .....+..+.+|...|. +++|+
T Consensus 298 ~~~~~~~~~~~~~~~~~~i~v~d~-----------------------------~~~~~~~~~~~~~~~v~-----~~~~s 343 (408)
T 4a11_B 298 TVSCGCSSEFVFVPYGSTIAVYTV-----------------------------YSGEQITMLKGHYKTVD-----CCVFQ 343 (408)
T ss_dssp EECCSSSSCEEEEEETTEEEEEET-----------------------------TTCCEEEEECCCSSCEE-----EEEEE
T ss_pred EEecCCCceEEEEecCCEEEEEEC-----------------------------cCCcceeeeccCCCeEE-----EEEEc
Confidence 222334556777788999999992 22556777888888887 89999
Q ss_pred CCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCC-CeEEEEcCCCcEEEEecCC
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVH-PIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iW~~~~ 367 (551)
|++++|++++. ||.|+||++. ++++.....+. ....+.|.. ..+.+++.++.+++|+...
T Consensus 344 ~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 344 SNFQELYSGSR---DCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp TTTTEEEEEET---TSCEEEEEECC-------------------------------------------
T ss_pred CCCCEEEEECC---CCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeecCCcc
Confidence 99999999999 9999999999 77666554332 222333332 3455666799999998653
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-30 Score=258.43 Aligned_cols=265 Identities=13% Similarity=0.072 Sum_probs=208.1
Q ss_pred cccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccc-----cEEEEEecCC
Q 008844 4 PIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVA-----AITSVCWSKY 78 (551)
Q Consensus 4 ~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~-----~V~~l~~s~~ 78 (551)
.+|+..+++....+. ..|...|.+++|||+|.+||+++.||.|+||+..+ ++..+. | .. .|.+++|||+
T Consensus 67 ~~~~~~~~~~~~~~~-~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~--~~~~~~~sv~svafSPD 140 (588)
T 2j04_A 67 NKLDFELAQQNGLLN-SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-S--KGNLSSRTYHCFEWNPI 140 (588)
T ss_dssp CTTTTSCCCSSCSST-TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-C--SSCSTTTCEEEEEECSS
T ss_pred ceEEEEeCCCceEee-cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-C--CCccccccEEEEEEcCC
Confidence 455655554434333 24578899999999999999999999999999654 555665 4 33 6999999999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCe-------EEEEEEcCC-----CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee
Q 008844 79 GHRILVSAADKSLTLWDVLKGE-------KITRIVLQQ-----TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~-------~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 146 (551)
|++|++|+.||+|+|||+.++. .+..+..+. .+.+++|+|++ +++++.|+.+++|++..+...
T Consensus 141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-----Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-----LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-----EEEEETTCCEEEECCCSSSSC
T ss_pred CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-----EEEEeCCCeEEEEECCCCccc
Confidence 9999999999999999999875 356665333 68999999975 788999999999999887732
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEE--
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVF-- 224 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~-- 224 (551)
...... ...|...|.+++|+ |.+|++++ +|+|++||+.+++...... +|...|..++|
T Consensus 216 ~~~~tL----------------~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~ 275 (588)
T 2j04_A 216 PVSRMI----------------QNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNH 275 (588)
T ss_dssp CCEEEE----------------ECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETT
T ss_pred cceeee----------------cccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeee
Confidence 100000 01122379999999 68899887 6999999999888743333 79999999999
Q ss_pred eeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCC
Q 008844 225 SRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDG 304 (551)
Q Consensus 225 s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg 304 (551)
+|++..|++++.||+ ++|. .. .++|+|++
T Consensus 276 s~d~~~La~a~edG~-klw~-----------------------------------~d---------------~~~~spd~ 304 (588)
T 2j04_A 276 EKESTILLMSNKTSY-KVLL-----------------------------------ED---------------ELHVTADN 304 (588)
T ss_dssp CSSCEEEEECSSCEE-EEEE-----------------------------------SS---------------SEEEECCC
T ss_pred CCCCCEEEEEcCCCC-EEEe-----------------------------------ec---------------cEEECCCc
Confidence 999999999999999 9998 11 24589999
Q ss_pred CEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcC
Q 008844 305 EWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 305 ~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~ 356 (551)
..+++. |+.+++|+..+..+..+.+ ...|.+++|+|+|++||+++.
T Consensus 305 ~l~a~~-----d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 305 IIAPYL-----EKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSHHHH-----HHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEc-----CCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 888763 6899999988555555554 667999999999999999875
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.4e-29 Score=244.39 Aligned_cols=249 Identities=13% Similarity=0.097 Sum_probs=204.0
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe----EEEEEEcCCCeeEEEEecCCCCCc-EEEEeeCCCCcEEEE
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE----KITRIVLQQTPLQARLHPGSSTPS-LCLACPLSSAPMIVD 139 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~i~i~d 139 (551)
+|...|++++|+|++++|++++.|+.|++|++.++. ..........+..+.|+|+ .. ++++++.++.+++|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCEEEEC
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeEEEEE
Confidence 469999999999999999999999999999998887 5555555567899999997 45 789999999999999
Q ss_pred c-CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCC---------CcEEE
Q 008844 140 L-STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKS---------NQIRA 209 (551)
Q Consensus 140 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~---------~~~~~ 209 (551)
+ .++....+.. ..|...|.+++|+| +.+|++++.||.|++||+++ ++.+.
T Consensus 86 ~~~~~~~~~~~~-------------------~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 86 LIGSPSFQALTN-------------------NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp SSSSSSEEECBS-------------------CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred eccCCceEeccc-------------------cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 9 8776532211 01344899999999 99999999999999999987 66666
Q ss_pred eeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcC-CccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc
Q 008844 210 LVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLL-PLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD 288 (551)
Q Consensus 210 ~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (551)
.+ .|...|.+++|+|++ |++++.|+.|++||+.. .. .........+..
T Consensus 146 ~~--~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~---------------------------~~~~~~~~~~~~ 194 (342)
T 1yfq_A 146 NT--KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED---------------------------DNGTIEESGLKY 194 (342)
T ss_dssp SS--SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT---------------------------CCCEEEECSCSS
T ss_pred EE--eeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc---------------------------ccceeeecCCCC
Confidence 66 588999999999887 99999999999999322 10 111222334455
Q ss_pred ccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-C------ceeEEEecCCC---------ceEEEEEecCCCeE
Q 008844 289 SITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-G------YLVKILEGPKE---------ALIDLAWHPVHPII 351 (551)
Q Consensus 289 ~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~------~~~~~l~~h~~---------~v~~l~~sp~~~~l 351 (551)
.+. +++|+| ++++|++++. +|.|+||++. . ..+..+.+|.. .|.+++|+|++++|
T Consensus 195 ~i~-----~i~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 266 (342)
T 1yfq_A 195 QIR-----DVALLPKEQEGYACSSI---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266 (342)
T ss_dssp CEE-----EEEECSGGGCEEEEEET---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred cee-----EEEECCCCCCEEEEEec---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEE
Confidence 555 899999 9999999999 9999999998 6 78888988865 99999999999999
Q ss_pred EEEcCCCcEEEEecCCCCcceeec
Q 008844 352 VSVSLTGWVYIWAKDYTENWSAFA 375 (551)
Q Consensus 352 ~s~s~dg~i~iW~~~~~~~~~~~s 375 (551)
++++.||.|++|++.+++....+.
T Consensus 267 ~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 267 YTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp EEEETTSCEEEEETTTTEEEEECC
T ss_pred EEecCCceEEEEcCccHhHhhhhh
Confidence 999999999999999876544443
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=9.5e-30 Score=254.26 Aligned_cols=254 Identities=13% Similarity=0.088 Sum_probs=164.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeccCCceeeEe---ecccccccEEEEEecC--------CCCEEEEEeCCCCEEEEEcC
Q 008844 29 IAFNRRGTLLAAGCSDGSCVIWDFETRGIAKEL---RDKECVAAITSVCWSK--------YGHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 29 l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~---~~~~h~~~V~~l~~s~--------~g~~l~s~s~dg~i~vwd~~ 97 (551)
..+++++.+||+|+.|++|+|||+.++...... ...+|...|++|+|+| ++++|++++.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 334455678999999999999999987654321 1235699999999998 78999999999999999998
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
++.++..+..+.. .+.
T Consensus 175 ~~~~~~~~~~~~~----------------------------------------------------------------~v~ 190 (393)
T 4gq1_A 175 DEGPILAGYPLSS----------------------------------------------------------------PGI 190 (393)
T ss_dssp TTEEEEEEEECSS----------------------------------------------------------------CEE
T ss_pred CCceeeeecCCCC----------------------------------------------------------------CcE
Confidence 8876655543322 444
Q ss_pred EEEEeeCC-CEEEEEecCceEEEEECCCCcEEEee------------------------eccCccceEEEEEe-eCCCEE
Q 008844 178 AACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALV------------------------PVSGAAVIKNIVFS-RNGQYL 231 (551)
Q Consensus 178 ~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~------------------------~~~~~~~i~~l~~s-~~g~~l 231 (551)
+++|+|++ .+|++|+.||+|++||+++++..... ...|...+.++.|+ ++++.|
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 55555544 34555556666666665554332111 11566788899987 799999
Q ss_pred EEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC--CCCEEEE
Q 008844 232 LTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG--DGEWVIA 309 (551)
Q Consensus 232 ~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~--dg~~l~~ 309 (551)
++++.|+++++||+...... .. +......... ..-.........+...+ .++|+| ++.++++
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~--~~---l~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDY--NE---ISDSTMKLGP-----KNLLPNVQGISLFPSLL------GACPHPRYMDYFATA 334 (393)
T ss_dssp EEECTTSEEEEEEC-----------------------------CCSCSEEEECSSCCSS------CCEECSSCTTEEEEE
T ss_pred EEEeCCCCEEEEECccCCCC--ce---EeeecCcccc-----EEEccccccccccCcce------eEEEccCCCCEEEEE
Confidence 99999999999994322110 00 0000000000 00000111111111112 344544 4556777
Q ss_pred eeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 310 GSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 310 gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
|+. ||.|+|||+. +.++..+.+|..+|.+|+|+|+|++||+++.+| +.+|.+.
T Consensus 335 gs~---Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 335 HSQ---HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ETT---TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ECC---CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 887 9999999999 888888888999999999999999999998665 6666654
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.7e-28 Score=248.94 Aligned_cols=275 Identities=16% Similarity=0.269 Sum_probs=205.2
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHR 81 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~ 81 (551)
.|+|||..+++....+.. |.+.|.+++| ++++|++|+.||+|++||+.+++.+..+.+| ...|.+++|++ .+
T Consensus 154 ~i~iwd~~~~~~~~~~~~--h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~--~~ 225 (435)
T 1p22_A 154 TIKIWDKNTLECKRILTG--HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH--CEAVLHLRFNN--GM 225 (435)
T ss_dssp CEEEEESSSCCEEEEECC--CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC--CSCEEEEECCT--TE
T ss_pred eEEEEeCCCCeEEEEEcC--CCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC--CCcEEEEEEcC--CE
Confidence 478999999887777654 8899999999 7889999999999999999999999998765 89999999974 59
Q ss_pred EEEEeCCCCEEEEEcCCCeEE---EEEEcCC-CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCC
Q 008844 82 ILVSAADKSLTLWDVLKGEKI---TRIVLQQ-TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVAN 157 (551)
Q Consensus 82 l~s~s~dg~i~vwd~~~~~~~---~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (551)
|++|+.|++|++||+.++..+ ..+..+. .+..+.+. ...+++++.++.+++||+.++.......
T Consensus 226 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~------- 293 (435)
T 1p22_A 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-----DKYIVSASGDRTIKVWNTSTCEFVRTLN------- 293 (435)
T ss_dssp EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEETTTCCEEEEEE-------
T ss_pred EEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-----CCEEEEEeCCCeEEEEECCcCcEEEEEc-------
Confidence 999999999999999887654 3444443 45666663 3489999999999999999887654321
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 158 GIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
.|...+.+++| ++.++++|+.||.|++||+++++.+..+. .|...|.+++| ++.+|++++.|
T Consensus 294 -------------~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 294 -------------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp -------------CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETT
T ss_pred -------------CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCC
Confidence 12237888888 47899999999999999999999988886 78999999999 78899999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
|.|++||+....... ......++..+..|...|. +++| ++.+|++|+. ||
T Consensus 356 g~i~vwd~~~~~~~~--------------------~~~~~~~~~~~~~h~~~v~-----~l~~--~~~~l~s~s~---Dg 405 (435)
T 1p22_A 356 GKIKVWDLVAALDPR--------------------APAGTLCLRTLVEHSGRVF-----RLQF--DEFQIVSSSH---DD 405 (435)
T ss_dssp SCEEEEEHHHHTSTT--------------------SCTTTTEEEEECCCSSCCC-----CEEE--CSSCEEECCS---SS
T ss_pred CcEEEEECCCCCCcc--------------------ccccchheeeccCCCCCeE-----EEEe--CCCEEEEEeC---CC
Confidence 999999932110000 0001225667788888887 7777 7899999999 99
Q ss_pred eEEEEecC-CceeEEEecCCCceEEEEEe
Q 008844 318 KIYIWDRA-GYLVKILEGPKEALIDLAWH 345 (551)
Q Consensus 318 ~I~iwd~~-~~~~~~l~~h~~~v~~l~~s 345 (551)
.|+|||+. ....... ....+..++.|.
T Consensus 406 ~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 433 (435)
T 1p22_A 406 TILIWDFLNDPAAQAE-PPRSPSRTYTYI 433 (435)
T ss_dssp EEEEEC-----------------------
T ss_pred EEEEEECCCCCCcccC-CCCCCccceeee
Confidence 99999998 4433332 233445555554
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.4e-28 Score=243.06 Aligned_cols=256 Identities=13% Similarity=0.209 Sum_probs=205.1
Q ss_pred CccccccCC-CCcc-ceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEe--cC
Q 008844 2 NAPIIDPLQ-GDFP-EVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCW--SK 77 (551)
Q Consensus 2 nl~lwd~~~-~~~~-~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~--s~ 77 (551)
.|+|||..+ +... ..+. .|.+.|++++|+|++++|++|+.||.|++||+.++..+... . |...|++++| ++
T Consensus 65 ~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~--~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 65 DVRCWEVQDSGQTIPKAQQ--MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-Q--HDAPVKTIHWIKAP 139 (368)
T ss_dssp EEEEEEECTTSCEEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-E--CSSCEEEEEEEECS
T ss_pred cEEEEEcCCCCceeEEEec--cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-c--ccCceEEEEEEeCC
Confidence 378999987 4332 3333 38899999999999999999999999999999988876643 3 5899999999 89
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCC
Q 008844 78 YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVAN 157 (551)
Q Consensus 78 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (551)
++++|++++.|+.|++||+.+++.+..+..+..+..+.+.+. .++++..++.+.+|++.............
T Consensus 140 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---- 210 (368)
T 3mmy_A 140 NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP-----MAVVATAERGLIVYQLENQPSEFRRIESP---- 210 (368)
T ss_dssp SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT-----EEEEEEGGGCEEEEECSSSCEEEEECCCS----
T ss_pred CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC-----eeEEEeCCCcEEEEEeccccchhhhcccc----
Confidence 999999999999999999999999999998888777777754 68889999999999998876543322211
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeCCCE----EEEEecCceEEEEECCCC---cEEEeeeccCcc------------c
Q 008844 158 GIAPSSRNKYSDGTPPFTPTAACFNKYGDL----VYVGNSKGEILVIDHKSN---QIRALVPVSGAA------------V 218 (551)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~----l~~g~~dg~i~i~d~~~~---~~~~~~~~~~~~------------~ 218 (551)
....+.++++.++... +++|+.+|.|++|++... ..+..+. .|.. .
T Consensus 211 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 275 (368)
T 3mmy_A 211 --------------LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK-CHRSNGTNTSAPQDIYA 275 (368)
T ss_dssp --------------CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE-CSEEC----CCCEEECC
T ss_pred --------------ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee-eeecccccccccccccc
Confidence 1125667777666654 999999999999999987 3344443 4443 7
Q ss_pred eEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 219 IKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 219 i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
|++++|+|++++|++++.||.|++||+ ....++..+..|...+. ++
T Consensus 276 v~~~~~sp~~~~l~s~~~dg~i~iwd~-----------------------------~~~~~~~~~~~~~~~v~-----~~ 321 (368)
T 3mmy_A 276 VNGIAFHPVHGTLATVGSDGRFSFWDK-----------------------------DARTKLKTSEQLDQPIS-----AC 321 (368)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEET-----------------------------TTTEEEEECCCCSSCEE-----EE
T ss_pred eEEEEEecCCCEEEEEccCCeEEEEEC-----------------------------CCCcEEEEecCCCCCce-----EE
Confidence 999999999999999999999999992 22556777788888887 89
Q ss_pred EEcCCCCEEEEeeccCCcceEEEEe
Q 008844 299 CFSGDGEWVIAGSASKGEHKIYIWD 323 (551)
Q Consensus 299 ~~s~dg~~l~~gs~~~~dg~I~iwd 323 (551)
+|+|+|++|++++. ++..+.|+
T Consensus 322 ~~s~~g~~l~~~s~---d~~~~~~~ 343 (368)
T 3mmy_A 322 CFNHNGNIFAYASS---YDWSKGHE 343 (368)
T ss_dssp EECTTSSCEEEEEC---CCSTTCGG
T ss_pred EECCCCCeEEEEec---cccccccc
Confidence 99999999999998 55444333
No 115
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=4.3e-29 Score=241.83 Aligned_cols=220 Identities=16% Similarity=0.256 Sum_probs=173.1
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE--EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK--ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
+|...|++++|+|+|++|++|+.|++|+|||+.++.. +..+..|.
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~--------------------------------- 57 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE--------------------------------- 57 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS---------------------------------
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC---------------------------------
Confidence 4599999999999999999999999999999987753 33343332
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee--CCCEEEEEecCceEEEEECCCCc--EEEeeeccCccc
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK--YGDLVYVGNSKGEILVIDHKSNQ--IRALVPVSGAAV 218 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~~~ 218 (551)
..|.+++|++ ++++|++|+.|++|++||++++. ....+. .|...
T Consensus 58 -------------------------------~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~ 105 (316)
T 3bg1_A 58 -------------------------------GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA-GHDSS 105 (316)
T ss_dssp -------------------------------SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC-CCSSC
T ss_pred -------------------------------ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc-CCCCc
Confidence 2788999975 48899999999999999999874 344443 78999
Q ss_pred eEEEEEeeC--CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 219 IKNIVFSRN--GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 219 i~~l~~s~~--g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
|.+++|+|+ +.+|++++.|++|++|++.... .......+..|...+.
T Consensus 106 V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~--------------------------~~~~~~~~~~h~~~v~----- 154 (316)
T 3bg1_A 106 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEG--------------------------QWEVKKINNAHTIGCN----- 154 (316)
T ss_dssp CCEEEECCTTTCSCEEEECSSSCEEEEEECSSS--------------------------CEEECCBTTSSSSCBC-----
T ss_pred eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC--------------------------CcceeeeeccccCCcc-----
Confidence 999999998 7899999999999999932110 0011234456666666
Q ss_pred eeEEcCC-----------------CCEEEEeeccCCcceEEEEecC-C---ceeEEEecCCCceEEEEEecCC----CeE
Q 008844 297 APCFSGD-----------------GEWVIAGSASKGEHKIYIWDRA-G---YLVKILEGPKEALIDLAWHPVH----PII 351 (551)
Q Consensus 297 ~~~~s~d-----------------g~~l~~gs~~~~dg~I~iwd~~-~---~~~~~l~~h~~~v~~l~~sp~~----~~l 351 (551)
+++|+|+ +++|++|+. |+.|+|||+. + .++..+.+|...|.+++|+|++ .+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~---D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC---DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBT---TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred eEEEccccCCccccccccccCccccceEEEecC---CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 7788887 579999999 9999999998 4 4677889999999999999987 789
Q ss_pred EEEcCCCcEEEEecCCCC--c--------------ceeecCCcceece
Q 008844 352 VSVSLTGWVYIWAKDYTE--N--------------WSAFAPDFKELEE 383 (551)
Q Consensus 352 ~s~s~dg~i~iW~~~~~~--~--------------~~~~spd~~~l~~ 383 (551)
++++.||+|+||++.... . -.+|+|++..|+.
T Consensus 232 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las 279 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAV 279 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEE
T ss_pred EEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEE
Confidence 999999999999987621 0 1267788777664
No 116
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=2.4e-27 Score=245.58 Aligned_cols=324 Identities=11% Similarity=0.031 Sum_probs=241.4
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEec--cCCceeeEeecccccccEEEEEecC--
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDF--ETRGIAKELRDKECVAAITSVCWSK-- 77 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~--~~~~~~~~~~~~~h~~~V~~l~~s~-- 77 (551)
.|.+||..+++....+.. +.. +.+++|+|+|++|++++.+++|++||+ .+++++..+.. ...+..++|+|
T Consensus 160 ~V~v~D~~t~~~~~~i~~--g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~---g~~p~~va~sp~~ 233 (543)
T 1nir_A 160 QIALVDGDSKKIVKVIDT--GYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI---GIEARSVESSKFK 233 (543)
T ss_dssp EEEEEETTTCCEEEEEEC--STT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC---CSEEEEEEECCST
T ss_pred eEEEEECCCceEEEEEec--Ccc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec---CCCcceEEeCCCc
Confidence 378999999987666653 223 889999999999999999999999999 88888888863 45689999999
Q ss_pred --CCCEEEEEeC-CCCEEEEEcCCCeEEEEEEcCC------------CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 78 --YGHRILVSAA-DKSLTLWDVLKGEKITRIVLQQ------------TPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 78 --~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~------------~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
+|++|++++. +++|.|||..+++++..+.... .+..+.++|++ ..++++...++.|.+||+.+
T Consensus 234 ~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~--~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 234 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH--PEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEECTT
T ss_pred CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC--CEEEEEECCCCeEEEEEecC
Confidence 9999999985 8999999999999998887531 45678888865 45777888899999999987
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCCCcEEEeeecc---Cccc
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQIRALVPVS---GAAV 218 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~---~~~~ 218 (551)
.......... +...+..++|+|+|++|++++ .+++|.+||+.+++++..+... |.+.
T Consensus 312 ~~~l~~~~i~-------------------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 312 IDNLTVTSIG-------------------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp SSSCEEEEEE-------------------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred CCcceeEEec-------------------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 6532211000 011567899999999877665 5889999999999998877632 4433
Q ss_pred eEEEEEeeC-CCEEEEee-CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 219 IKNIVFSRN-GQYLLTNS-NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 219 i~~l~~s~~-g~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
...+ ++|+ +..++++. .|++|.+|++.... .. ....+++..+..+...+.
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~-~~---------------------~~~~~~v~~l~~~g~~~~----- 424 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKN-HP---------------------QYAWKKVAELQGQGGGSL----- 424 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT-CT---------------------TTBTSEEEEEECSCSCCC-----
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCC-Cc---------------------hhcCeEEEEEEcCCCCce-----
Confidence 3333 4677 56666665 58999999932100 00 001456777777766655
Q ss_pred eeEEcCCCCEEEEeeccC----CcceEEEEecC-Ccee-EEE--------ecCCCceEEEEEecCCCeEEEEc-----CC
Q 008844 297 APCFSGDGEWVIAGSASK----GEHKIYIWDRA-GYLV-KIL--------EGPKEALIDLAWHPVHPIIVSVS-----LT 357 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~----~dg~I~iwd~~-~~~~-~~l--------~~h~~~v~~l~~sp~~~~l~s~s-----~d 357 (551)
.++|+|+|++|++++..+ .++.|.|||+. ++.. ..+ ..+...+..++|+|+|+.|+++. .+
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~ 504 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDS 504 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSC
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCC
Confidence 789999999999987211 15799999999 6665 443 34567899999999999887662 47
Q ss_pred CcEEEEecCCCCcce------eecCCcce
Q 008844 358 GWVYIWAKDYTENWS------AFAPDFKE 380 (551)
Q Consensus 358 g~i~iW~~~~~~~~~------~~spd~~~ 380 (551)
+.|.|||..+.+... .+.|+|+.
T Consensus 505 ~~i~v~D~~t~~~~~~i~~~~~~~p~g~~ 533 (543)
T 1nir_A 505 SALVVVDDKTLKLKAVVKDPRLITPTGKF 533 (543)
T ss_dssp CEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred CeEEEEECCCceEEEeecCCCccCCCeee
Confidence 999999999987544 34455554
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.5e-27 Score=224.90 Aligned_cols=252 Identities=12% Similarity=0.148 Sum_probs=170.2
Q ss_pred EEEEEEcCCCC---EEEEEeCCCeEEEEeccCC---ceeeEeecccccccE-------------------------EEEE
Q 008844 26 MKCIAFNRRGT---LLAAGCSDGSCVIWDFETR---GIAKELRDKECVAAI-------------------------TSVC 74 (551)
Q Consensus 26 V~~l~fs~dg~---~latg~~dg~I~iwd~~~~---~~~~~~~~~~h~~~V-------------------------~~l~ 74 (551)
+.++-|-.-|- .+++++. ..|++|+..++ +.++++.+| ..+| .+|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFA--EVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECC--SSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEecc--CceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 45555644443 6777774 68999999988 677777655 5444 4555
Q ss_pred ecCC----CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEee--CCCCcEEEEcCC-Cceee
Q 008844 75 WSKY----GHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACP--LSSAPMIVDLST-GSTSI 147 (551)
Q Consensus 75 ~s~~----g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~i~i~d~~~-~~~~~ 147 (551)
|+|+ +.++++++. .+.+|++.+++ ++.++. .++.|++|++.. ++...
T Consensus 119 ~spd~~~~~~~l~s~g~--~~~v~~l~~g~------------------------lv~ss~~g~d~~V~~~~~s~dG~~~~ 172 (356)
T 2w18_A 119 CSSDDESEKQVLLKSGN--IKAVLGLTKRR------------------------LVSSSGTLSDQQVEVMTFAEDGGGKE 172 (356)
T ss_dssp C------CCEEEEEEEE--EEEEEEETTTE------------------------EEEEESSSTTCEEEEEEECTTSCEEE
T ss_pred ECCCccccccEEEeCCC--eEEEEecCCCc------------------------EEEecccCCCCcEEEEEECCCCceee
Confidence 5555 555555542 25555554333 223322 478888888854 44322
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee---CCCEEEEEecCceEEEEECCCCcEEEeeeccC--ccceEEE
Q 008844 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK---YGDLVYVGNSKGEILVIDHKSNQIRALVPVSG--AAVIKNI 222 (551)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~l 222 (551)
... .|...++.++|++ ++.+|++|+.|++|+|||+.+++++.++...| ...+.++
T Consensus 173 s~~--------------------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~v 232 (356)
T 2w18_A 173 NQF--------------------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHK 232 (356)
T ss_dssp EEE--------------------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEE
T ss_pred eec--------------------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEE
Confidence 111 1222778899999 77999999999999999999999999886322 3468888
Q ss_pred EEeeCCCEE------------EEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee-----cc
Q 008844 223 VFSRNGQYL------------LTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF-----RE 285 (551)
Q Consensus 223 ~~s~~g~~l------------~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 285 (551)
+|+|+|.++ ++|+.|++|++||.. ++.++..+ .+
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~-----------------------------tgk~l~v~~~~~p~G 283 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK-----------------------------TTLSVGVMLYCLPPG 283 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETT-----------------------------TTEEEEEEEECCCTT
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC-----------------------------CCEEEEEEEeeccCC
Confidence 999999876 567789999999922 13333222 23
Q ss_pred cccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceE-EEEEecCCCeEEEEcCCCcEEEE
Q 008844 286 FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALI-DLAWHPVHPIIVSVSLTGWVYIW 363 (551)
Q Consensus 286 ~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~-~l~~sp~~~~l~s~s~dg~i~iW 363 (551)
|..... +..+ ++.++|+|+. |++|+|||+. |+++..|.+|...+. .++|+|++++|++|+.|++|+||
T Consensus 284 h~~~~l-----sg~~--sg~~lASgS~---DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 284 QAGRFL-----EGDV--KDHCAAAILT---SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp CCCCEE-----EEEE--ETTEEEEEET---TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred CcceeE-----cccc--CCCEEEEEcC---CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 332221 2333 3789999999 9999999999 999999999987665 58999999999999999999999
Q ss_pred ec
Q 008844 364 AK 365 (551)
Q Consensus 364 ~~ 365 (551)
++
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 85
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=5.9e-28 Score=237.78 Aligned_cols=262 Identities=12% Similarity=0.066 Sum_probs=183.7
Q ss_pred EEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEE
Q 008844 49 IWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLA 128 (551)
Q Consensus 49 iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 128 (551)
||.+.+...+..+..| ...|++++|+|+|++|++|+.++ ++||++.++..+.....+ .+..+.+.+.+ ..++++
T Consensus 3 i~s~~~~~~~~~~~~h--~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHV--SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRT--NYVAFV 76 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTS--SEEEEE
T ss_pred cccccccCCccccccC--CCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCC--CEEEEE
Confidence 5666666666666554 89999999999999999988665 889999888776665544 46666777654 335577
Q ss_pred eeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC-cE
Q 008844 129 CPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN-QI 207 (551)
Q Consensus 129 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~-~~ 207 (551)
++.++.+++||+.++....... . ...+.+++|+++. ++++ .++.|++||+.++ +.
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~-~--------------------~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~ 132 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIK-V--------------------DAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR 132 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEE-C--------------------SSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB
T ss_pred ECCccEEEEEECCCCcEEEEEE-C--------------------CCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee
Confidence 8888999999999987654321 1 1178899998764 4444 4789999999988 66
Q ss_pred EEeeeccCccceEEEEEeeCCCEEEE--eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeecccee-eeeec
Q 008844 208 RALVPVSGAAVIKNIVFSRNGQYLLT--NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKC-LALFR 284 (551)
Q Consensus 208 ~~~~~~~~~~~i~~l~~s~~g~~l~t--~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 284 (551)
+..+.. ....+++++ .+|++ ++.||.|++||+...... ..... ......... +..+.
T Consensus 133 ~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~-----~~~~~---------~~~~~~~~p~~~~~~ 192 (355)
T 3vu4_A 133 ITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSA-----TTQDQ---------GVQQKAILGKGVLIK 192 (355)
T ss_dssp SSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC--------------------------------CCEEEC
T ss_pred eEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcc-----ccccc---------cccccccCcccEEEE
Confidence 555532 444566776 56666 588999999993321100 00000 000000111 56778
Q ss_pred ccccccceeeeeeeEEcCCCCEEEEeeccCCcce-EEEEecC-CceeEEEe-c-CCCceEEEEEecCCCeEEEEcCCCcE
Q 008844 285 EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK-IYIWDRA-GYLVKILE-G-PKEALIDLAWHPVHPIIVSVSLTGWV 360 (551)
Q Consensus 285 ~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~-I~iwd~~-~~~~~~l~-~-h~~~v~~l~~sp~~~~l~s~s~dg~i 360 (551)
+|...|. +++|+|+|++|++|+. |++ |+|||+. ++++..+. + |...|.+++|+|++++|++++.|++|
T Consensus 193 ~h~~~v~-----~~~~s~~g~~l~s~s~---d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 193 AHTNPIK-----MVRLNRKSDMVATCSQ---DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp CCSSCEE-----EEEECTTSSEEEEEET---TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred ccCCceE-----EEEECCCCCEEEEEeC---CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEE
Confidence 8988888 8999999999999999 998 9999999 99999998 6 99999999999999999999999999
Q ss_pred EEEecCCC
Q 008844 361 YIWAKDYT 368 (551)
Q Consensus 361 ~iW~~~~~ 368 (551)
+||++...
T Consensus 265 ~iw~~~~~ 272 (355)
T 3vu4_A 265 HVFEIFND 272 (355)
T ss_dssp EEEESSCC
T ss_pred EEEEccCC
Confidence 99999765
No 119
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.1e-28 Score=240.15 Aligned_cols=226 Identities=16% Similarity=0.279 Sum_probs=181.2
Q ss_pred ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC--CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC
Q 008844 56 GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK--GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS 133 (551)
Q Consensus 56 ~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 133 (551)
+++..+.+| ...|++++|+|++++|++++.|+.|+||++.. +..+..+..|.
T Consensus 2 ~~~~~~~~h--~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~------------------------ 55 (379)
T 3jrp_A 2 SMVVIANAH--NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE------------------------ 55 (379)
T ss_dssp ---CCEEEC--CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS------------------------
T ss_pred CccEEecCC--cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC------------------------
Confidence 445566655 99999999999999999999999999999973 33333333222
Q ss_pred CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC--CCEEEEEecCceEEEEECCCCc--EEE
Q 008844 134 APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY--GDLVYVGNSKGEILVIDHKSNQ--IRA 209 (551)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~--~~~ 209 (551)
..|++++|+++ +.+|++|+.||.|++||+.+++ .+.
T Consensus 56 ----------------------------------------~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 95 (379)
T 3jrp_A 56 ----------------------------------------GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 95 (379)
T ss_dssp ----------------------------------------SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred ----------------------------------------CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEee
Confidence 27899999877 8999999999999999999987 444
Q ss_pred eeeccCccceEEEEEeeC--CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc
Q 008844 210 LVPVSGAAVIKNIVFSRN--GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ 287 (551)
Q Consensus 210 ~~~~~~~~~i~~l~~s~~--g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (551)
.+. .|...|.+++|+|+ +.+|++++.|+.|++||+.... ......+..|.
T Consensus 96 ~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------------------------~~~~~~~~~~~ 147 (379)
T 3jrp_A 96 VHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG---------------------------TTSPIIIDAHA 147 (379)
T ss_dssp EEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS---------------------------CCCEEEEECCT
T ss_pred eec-CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC---------------------------ceeeEEecCCC
Confidence 443 68899999999999 9999999999999999932210 12233455677
Q ss_pred cccceeeeeeeEEcC-------------CCCEEEEeeccCCcceEEEEecC-Cc----eeEEEecCCCceEEEEEecC--
Q 008844 288 DSITKMHWKAPCFSG-------------DGEWVIAGSASKGEHKIYIWDRA-GY----LVKILEGPKEALIDLAWHPV-- 347 (551)
Q Consensus 288 ~~v~~~~~~~~~~s~-------------dg~~l~~gs~~~~dg~I~iwd~~-~~----~~~~l~~h~~~v~~l~~sp~-- 347 (551)
..+. +++|+| ++.+|++++. ++.|++||+. +. ++..+.+|...|.+++|+|+
T Consensus 148 ~~v~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 148 IGVN-----SASWAPATIEEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp TCEE-----EEEECCCC----------CTTCEEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred CceE-----EEEEcCccccccccccCCCCCCEEEEEeC---CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 7776 889999 6999999999 9999999997 43 55678889999999999999
Q ss_pred -CCeEEEEcCCCcEEEEecCCCCcc-----------------eeecCCcceece
Q 008844 348 -HPIIVSVSLTGWVYIWAKDYTENW-----------------SAFAPDFKELEE 383 (551)
Q Consensus 348 -~~~l~s~s~dg~i~iW~~~~~~~~-----------------~~~spd~~~l~~ 383 (551)
+.+|++++.||.|+||++...+.. .+|+|++..|..
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 273 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence 899999999999999999875311 167888876654
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=6.4e-28 Score=236.11 Aligned_cols=268 Identities=14% Similarity=0.190 Sum_probs=188.0
Q ss_pred CccccccCCCCcc-ceeec-ccccceEEEEEEcC--CCCEEEEEeCCCeEEEEeccCC---------ceeeEeecccccc
Q 008844 2 NAPIIDPLQGDFP-EVIEE-YLEHGVMKCIAFNR--RGTLLAAGCSDGSCVIWDFETR---------GIAKELRDKECVA 68 (551)
Q Consensus 2 nl~lwd~~~~~~~-~~l~~-~~h~~~V~~l~fs~--dg~~latg~~dg~I~iwd~~~~---------~~~~~~~~~~h~~ 68 (551)
.|+|||..++... ..+.. ..|...|++++|+| ++++|++|+.||.|+|||+.++ ..+..+.. |..
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~ 111 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND--SKG 111 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC--CSS
T ss_pred eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc--cCC
Confidence 4789998865432 12222 23789999999999 6999999999999999999876 44556654 489
Q ss_pred cEEEEEecCC--CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCcee
Q 008844 69 AITSVCWSKY--GHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTS 146 (551)
Q Consensus 69 ~V~~l~~s~~--g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 146 (551)
.|.+++|+|+ +.+|++++.|+.|++||+.+++.+..+........+.
T Consensus 112 ~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~------------------------------- 160 (351)
T 3f3f_A 112 SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS------------------------------- 160 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS-------------------------------
T ss_pred ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc-------------------------------
Confidence 9999999999 9999999999999999998876433322111100000
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC---CCEEEEEecCceEEEEECCCCcE--EEeeeccCccceEE
Q 008844 147 ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY---GDLVYVGNSKGEILVIDHKSNQI--RALVPVSGAAVIKN 221 (551)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~ 221 (551)
.....+...+.+++|+|+ +.++++++.++.+.+|+...+.. +..+. .|...|++
T Consensus 161 --------------------~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~ 219 (351)
T 3f3f_A 161 --------------------IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRS 219 (351)
T ss_dssp --------------------CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEE
T ss_pred --------------------cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeE
Confidence 001122337899999997 89999999999999998888876 44443 68899999
Q ss_pred EEEeeCC----CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCC------------------CCCcceeeeecccee
Q 008844 222 IVFSRNG----QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIA------------------EPNGIEKMKMVGSKC 279 (551)
Q Consensus 222 l~~s~~g----~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 279 (551)
++|+|++ ++|++++.||.|++||+....... ........... ...............
T Consensus 220 ~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL-ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp EEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEEEEE
T ss_pred EEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc-ccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 9999998 899999999999999943221100 00000000000 000000011112355
Q ss_pred eeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 280 LALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 280 ~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
+..+.+|...|+ +++|+|++++|++++. ||.|+||++. +..+..+
T Consensus 299 ~~~~~~h~~~v~-----~~~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHNGEVW-----SVSWNLTGTILSSAGD---DGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSSCEE-----EEEECSSSCCEEEEET---TSCEEEEEECTTSCEEEE
T ss_pred EEEEecccccEE-----EEEEcCCCCEEEEecC---CCcEEEEecCcCcchhhe
Confidence 667777888887 8999999999999999 9999999999 6544443
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-28 Score=240.40 Aligned_cols=242 Identities=11% Similarity=0.069 Sum_probs=180.9
Q ss_pred EEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeecccc
Q 008844 73 VCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAV 152 (551)
Q Consensus 73 l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 152 (551)
..+.+++.+|++|+.||+|++||+.+++.+..+. ...+..+.++|. +++++.|+.+++|+........- ...
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~-~~~ 113 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILD-SKT 113 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEE-TTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc------eEEecCCCeEEEEEccCceEEee-cCC
Confidence 3455678899999999999999999999888776 233444555553 89999999999998764321100 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEee--CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCE
Q 008844 153 PDVANGIAPSSRNKYSDGTPPFTPTAACFNK--YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQY 230 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 230 (551)
.. ........+...|.+++|+| ++++|++|+.||.|++||+++++.+......+...|++++|+|+|.+
T Consensus 114 ~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~ 184 (343)
T 3lrv_A 114 NK---------VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL 184 (343)
T ss_dssp CC---------EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE
T ss_pred cc---------eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE
Confidence 00 00000112233799999999 99999999999999999999999877665466778999999999999
Q ss_pred EEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceee-eeecc-cccccceeeeeeeEEcCCCCEEE
Q 008844 231 LLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCL-ALFRE-FQDSITKMHWKAPCFSGDGEWVI 308 (551)
Q Consensus 231 l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~s~dg~~l~ 308 (551)
|++|+.||.|+|||+.. ...+ ..+.. |...|. +++|+|+|.+|+
T Consensus 185 lasg~~dg~i~iwd~~~-----------------------------~~~~~~~~~~~h~~~v~-----~l~fs~~g~~l~ 230 (343)
T 3lrv_A 185 LALYSPDGILDVYNLSS-----------------------------PDQASSRFPVDEEAKIK-----EVKFADNGYWMV 230 (343)
T ss_dssp EEEECTTSCEEEEESSC-----------------------------TTSCCEECCCCTTSCEE-----EEEECTTSSEEE
T ss_pred EEEEcCCCEEEEEECCC-----------------------------CCCCccEEeccCCCCEE-----EEEEeCCCCEEE
Confidence 99999999999999322 2223 44555 777777 899999999999
Q ss_pred EeeccCCcceEEEEecC-CceeEEEec---CCCceE--EEEEecCCCeEEEEcC-CCcEEEEecCCCC
Q 008844 309 AGSASKGEHKIYIWDRA-GYLVKILEG---PKEALI--DLAWHPVHPIIVSVSL-TGWVYIWAKDYTE 369 (551)
Q Consensus 309 ~gs~~~~dg~I~iwd~~-~~~~~~l~~---h~~~v~--~l~~sp~~~~l~s~s~-dg~i~iW~~~~~~ 369 (551)
+++. + .|+|||+. +..+..+.. |...+. +++|+|++++|++++. |+.|+||++....
T Consensus 231 s~~~---~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 231 VECD---Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEES---S-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEeC---C-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 9996 4 99999999 665544443 444444 6999999999999998 9999999996543
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.5e-27 Score=238.31 Aligned_cols=239 Identities=13% Similarity=0.175 Sum_probs=193.2
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe---EEEEEEcCC----------------------------------
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE---KITRIVLQQ---------------------------------- 109 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~---------------------------------- 109 (551)
..++.+++|+++|++|+++ .++.|.+||+.+|+ .+..+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4688999999999966666 47899999999998 666655322
Q ss_pred ---------------------CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC--CCceeeeccccCCCCCCCCCCCCCC
Q 008844 110 ---------------------TPLQARLHPGSSTPSLCLACPLSSAPMIVDLS--TGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 110 ---------------------~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
.+.++.|+|++. .++++++.++.+++|++. ++.........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------- 146 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRF-------------- 146 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecc--------------
Confidence 377899999864 235888899999999998 66544332110
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEE----eeeccCccceEEEEEeeC---CCEEEEeeCCCe
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRA----LVPVSGAAVIKNIVFSRN---GQYLLTNSNDRT 239 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~----~~~~~~~~~i~~l~~s~~---g~~l~t~s~Dg~ 239 (551)
.+...|++++|+|++++|++|+.+|.|++|++.++.... .+. .|...|++++|+|+ +++|++++.|+.
T Consensus 147 ----~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~~ 221 (450)
T 2vdu_B 147 ----CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDEH 221 (450)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTSC
T ss_pred ----cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcCCCCCCcEEEEEcCCCc
Confidence 112278999999999999999999999999998876543 443 78899999999999 999999999999
Q ss_pred EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee-ecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 240 IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL-FREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
|++||+. ...++.. +.+|...|. +++|+ ++++|++++. |+.
T Consensus 222 i~vwd~~-----------------------------~~~~~~~~~~~h~~~v~-----~~~~s-d~~~l~s~~~---d~~ 263 (450)
T 2vdu_B 222 IKISHYP-----------------------------QCFIVDKWLFGHKHFVS-----SICCG-KDYLLLSAGG---DDK 263 (450)
T ss_dssp EEEEEES-----------------------------CTTCEEEECCCCSSCEE-----EEEEC-STTEEEEEES---SSE
T ss_pred EEEEECC-----------------------------CCceeeeeecCCCCceE-----EEEEC-CCCEEEEEeC---CCe
Confidence 9999922 1333433 457777777 88999 9999999998 999
Q ss_pred EEEEecC-CceeEEEecC-------------------------CCceEEEEEecCCCeEEEEc-CCCcEEEEec
Q 008844 319 IYIWDRA-GYLVKILEGP-------------------------KEALIDLAWHPVHPIIVSVS-LTGWVYIWAK 365 (551)
Q Consensus 319 I~iwd~~-~~~~~~l~~h-------------------------~~~v~~l~~sp~~~~l~s~s-~dg~i~iW~~ 365 (551)
|+|||+. ++++..+..+ ...|.+++|+|++++|++++ .++.|+||++
T Consensus 264 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 264 IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999 8888888632 35689999999999999998 7999999999
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.1e-26 Score=218.89 Aligned_cols=201 Identities=14% Similarity=0.217 Sum_probs=143.2
Q ss_pred cceEEEEEEcCC----CCEEEEEeC--------------------CCeEEEEecc-CCceeeEeecccccccEEEEEecC
Q 008844 23 HGVMKCIAFNRR----GTLLAAGCS--------------------DGSCVIWDFE-TRGIAKELRDKECVAAITSVCWSK 77 (551)
Q Consensus 23 ~~~V~~l~fs~d----g~~latg~~--------------------dg~I~iwd~~-~~~~~~~~~~~~h~~~V~~l~~s~ 77 (551)
.+.|.+|+|+|+ ++++++++. |+.|++|++. +++.+..+.+| ...++.++|++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~--~~~v~~l~fs~ 188 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM--PPEETILTFAE 188 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC--CCSSCEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccC--CCceeeEEeec
Confidence 357889999999 888887663 7778888874 46666766665 66677777777
Q ss_pred ---CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCC
Q 008844 78 ---YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 78 ---~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
++.+|++++.|++|+|||+.+|+++.++..+....
T Consensus 189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v------------------------------------------ 226 (356)
T 2w18_A 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ------------------------------------------ 226 (356)
T ss_dssp EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------------------------------------------
T ss_pred cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce------------------------------------------
Confidence 66889999999999999999999999887543200
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCE------------EEEEecCceEEEEECCCCcEEEee----eccCccc
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDL------------VYVGNSKGEILVIDHKSNQIRALV----PVSGAAV 218 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~------------l~~g~~dg~i~i~d~~~~~~~~~~----~~~~~~~ 218 (551)
..+.+++|+|+|.+ +++|+.|++|++||..+++.+..+ +.+|...
T Consensus 227 -------------------~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~ 287 (356)
T 2w18_A 227 -------------------ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR 287 (356)
T ss_dssp -------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC
T ss_pred -------------------eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce
Confidence 03334444444443 477889999999999999887655 2245545
Q ss_pred eEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 219 IKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 219 i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
+.+..+ ++.++++++.|++|+|||+ ..++++..+.+|...+. ..+
T Consensus 288 ~lsg~~--sg~~lASgS~DgTIkIWDl-----------------------------~tGk~l~tL~gH~~~vv----s~v 332 (356)
T 2w18_A 288 FLEGDV--KDHCAAAILTSGTIAIWDL-----------------------------LLGQCTALLPPVSDQHW----SFV 332 (356)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEET-----------------------------TTCSEEEEECCC--CCC----CEE
T ss_pred eEcccc--CCCEEEEEcCCCcEEEEEC-----------------------------CCCcEEEEecCCCCCeE----EEE
Confidence 444444 4889999999999999992 33677888888877654 147
Q ss_pred EEcCCCCEEEEeeccCCcceEEEEec
Q 008844 299 CFSGDGEWVIAGSASKGEHKIYIWDR 324 (551)
Q Consensus 299 ~~s~dg~~l~~gs~~~~dg~I~iwd~ 324 (551)
+|||||++|++|+. |++|+|||+
T Consensus 333 afSPDG~~LaSGS~---D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLAGQK---DGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEEECT---TSCEEEEEE
T ss_pred EECCCCCEEEEEEC---CCcEEEecC
Confidence 99999999999999 999999996
No 124
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.7e-26 Score=232.12 Aligned_cols=284 Identities=12% Similarity=0.142 Sum_probs=210.4
Q ss_pred Ccccccc--CCCCccceeecccccceEEEEEEcC--------------CCCEEEEEeCC------CeEEEEeccCCceee
Q 008844 2 NAPIIDP--LQGDFPEVIEEYLEHGVMKCIAFNR--------------RGTLLAAGCSD------GSCVIWDFETRGIAK 59 (551)
Q Consensus 2 nl~lwd~--~~~~~~~~l~~~~h~~~V~~l~fs~--------------dg~~latg~~d------g~I~iwd~~~~~~~~ 59 (551)
.++|||+ .+++.........|...+.++++++ .+..|+.++.+ +.|++||+.. ....
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQF 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCE
Confidence 4789999 8887543322333666666666654 25666666554 7999999974 4556
Q ss_pred EeecccccccEEEEEecCCCCEEEEEeCCC---CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCC--
Q 008844 60 ELRDKECVAAITSVCWSKYGHRILVSAADK---SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSA-- 134 (551)
Q Consensus 60 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-- 134 (551)
.+..| ...|.+++|+|+|++|++++.++ .|++||+.+++..........+..+.|+|++. .++++++.++.
T Consensus 173 ~l~~~--~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~ 248 (415)
T 2hqs_A 173 VVHRS--PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLN 248 (415)
T ss_dssp EEEEE--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCE
T ss_pred EEeCC--CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC--EEEEEEecCCCce
Confidence 66655 78999999999999999999875 99999999998765444455678999999874 24446666555
Q ss_pred cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-Cc--eEEEEECCCCcEEEee
Q 008844 135 PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-KG--EILVIDHKSNQIRALV 211 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~ 211 (551)
|++||+.++....+. .+...+.+++|+|+|++|++++. +| .|++||+.+++.....
T Consensus 249 i~~~d~~~~~~~~l~---------------------~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~ 307 (415)
T 2hqs_A 249 LYVMDLASGQIRQVT---------------------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT 307 (415)
T ss_dssp EEEEETTTCCEEECC---------------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred EEEEECCCCCEEeCc---------------------CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe
Confidence 888999887754321 11227889999999999988876 44 7888899988764433
Q ss_pred eccCccceEEEEEeeCCCEEEEeeCC---CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc
Q 008844 212 PVSGAAVIKNIVFSRNGQYLLTNSND---RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD 288 (551)
Q Consensus 212 ~~~~~~~i~~l~~s~~g~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (551)
.+...+.+++|+|+|++|++++.+ ..|++||+.. ... ..+..+.
T Consensus 308 --~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-----------------------------~~~-~~l~~~~- 354 (415)
T 2hqs_A 308 --WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-----------------------------GGV-QVLSSTF- 354 (415)
T ss_dssp --CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-----------------------------CCE-EECCCSS-
T ss_pred --cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-----------------------------CCE-EEecCCC-
Confidence 466788999999999999988764 5899999221 222 2233332
Q ss_pred ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCC
Q 008844 289 SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHP 349 (551)
Q Consensus 289 ~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~ 349 (551)
.+. .++|+|+|++|++++.+++...|++||+.+.....+.+|.+.|.+++|+|.-.
T Consensus 355 ~~~-----~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 355 LDE-----TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp SCE-----EEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred CcC-----CeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 333 88999999999999873222389999999778888999999999999999754
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=7.8e-26 Score=229.03 Aligned_cols=259 Identities=12% Similarity=0.103 Sum_probs=206.0
Q ss_pred CccccccCCCCccceeec---ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 2 NAPIIDPLQGDFPEVIEE---YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~---~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
.|.+||+.+++....+.. ..|.+.|.+++|+++++++++++.|+.|++||+.+++.+..+..+ ...+.+++|+|+
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~ 222 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLT--GKWSKILLYDPI 222 (433)
T ss_dssp SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS--SSSEEEEEEETT
T ss_pred eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCC--CCCeeEEEEcCC
Confidence 378999998876653321 236789999999999999999999999999999999988888755 789999999999
Q ss_pred CCEEEEEe-CCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEee--------CCCCcEEEEcCCCceeeec
Q 008844 79 GHRILVSA-ADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACP--------LSSAPMIVDLSTGSTSILP 149 (551)
Q Consensus 79 g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--------~~~~i~i~d~~~~~~~~~~ 149 (551)
+++|++++ .++.|++||+.+++.+..+..+..+..+.|+|++. .+++++ .++.+++||+.+++.....
T Consensus 223 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~---~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~ 299 (433)
T 3bws_A 223 RDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGK---ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI 299 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSS---EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCC---EEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence 99886555 79999999999999988888877889999999864 455555 4789999999988654332
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEE-EEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCC
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLV-YVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG 228 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g 228 (551)
.. ...+.+++|+|+++.+ ++++.++.|.+||+.+++.+..+ .+...+.+++|+|+|
T Consensus 300 ~~---------------------~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 300 GP---------------------PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI--PVFDKPNTIALSPDG 356 (433)
T ss_dssp EE---------------------EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTS
T ss_pred cC---------------------CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe--cCCCCCCeEEEcCCC
Confidence 11 1167889999999755 56688999999999999888877 567789999999999
Q ss_pred CEEEEeeC---------------CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee
Q 008844 229 QYLLTNSN---------------DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293 (551)
Q Consensus 229 ~~l~t~s~---------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 293 (551)
++|++++. ||.|++||+. ....+..+.. ...+.
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~-----------------------------~~~~~~~~~~-~~~~~-- 404 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT-----------------------------TDTVKEFWEA-GNQPT-- 404 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT-----------------------------TTEEEEEEEC-SSSEE--
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECC-----------------------------CCcEEEEecC-CCCCc--
Confidence 99888876 5799999921 1333333333 22333
Q ss_pred eeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 294 HWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 294 ~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
.++|+|+|++|++++.. ++.|++|++.
T Consensus 405 ---~~~~s~dg~~l~~~~~~--d~~i~v~~~~ 431 (433)
T 3bws_A 405 ---GLDVSPDNRYLVISDFL--DHQIRVYRRD 431 (433)
T ss_dssp ---EEEECTTSCEEEEEETT--TTEEEEEEET
T ss_pred ---eEEEcCCCCEEEEEECC--CCeEEEEEec
Confidence 88999999999887632 7999999975
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-26 Score=246.75 Aligned_cols=219 Identities=17% Similarity=0.296 Sum_probs=179.8
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCC--eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 65 ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKG--EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 65 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
+|.++|++++|+|++++|++|+.||+|+|||+..+ ..+..+..|.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~--------------------------------- 53 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--------------------------------- 53 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS---------------------------------
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc---------------------------------
Confidence 45999999999999999999999999999998743 3333333222
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC--CCEEEEEecCceEEEEECCCCc--EEEeeeccCccc
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY--GDLVYVGNSKGEILVIDHKSNQ--IRALVPVSGAAV 218 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~~~ 218 (551)
..|++++|+++ +++|++|+.||.|++||+.+++ .+..+. .|...
T Consensus 54 -------------------------------~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~h~~~ 101 (753)
T 3jro_A 54 -------------------------------GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSAS 101 (753)
T ss_dssp -------------------------------SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSC
T ss_pred -------------------------------CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc-CCCCC
Confidence 28899999988 8999999999999999999987 344443 78999
Q ss_pred eEEEEEeeC--CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 219 IKNIVFSRN--GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 219 i~~l~~s~~--g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
|++++|+|+ +.+|++++.||.|++||+.... ......+..|...+.
T Consensus 102 V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~---------------------------~~~~~~~~~~~~~v~----- 149 (753)
T 3jro_A 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG---------------------------TTSPIIIDAHAIGVN----- 149 (753)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEECCSSS---------------------------CCCCEEEECCSSCEE-----
T ss_pred eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC---------------------------CcceeEeecCCCceE-----
Confidence 999999999 9999999999999999933211 122334556777776
Q ss_pred eeEEcC-------------CCCEEEEeeccCCcceEEEEecC-C----ceeEEEecCCCceEEEEEecC---CCeEEEEc
Q 008844 297 APCFSG-------------DGEWVIAGSASKGEHKIYIWDRA-G----YLVKILEGPKEALIDLAWHPV---HPIIVSVS 355 (551)
Q Consensus 297 ~~~~s~-------------dg~~l~~gs~~~~dg~I~iwd~~-~----~~~~~l~~h~~~v~~l~~sp~---~~~l~s~s 355 (551)
+++|+| ++.+|++|+. ||.|++||+. + .++..+.+|...|++++|+|+ +.+|++++
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred EEEecCcccccccccccCCCCCEEEEEEC---CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 889999 5999999999 9999999998 4 566788899999999999999 89999999
Q ss_pred CCCcEEEEecCCCCc-----------------ceeecCCcceece
Q 008844 356 LTGWVYIWAKDYTEN-----------------WSAFAPDFKELEE 383 (551)
Q Consensus 356 ~dg~i~iW~~~~~~~-----------------~~~~spd~~~l~~ 383 (551)
.||.|++|++.+++. ..+|+|++..+..
T Consensus 227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 271 (753)
T 3jro_A 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271 (753)
T ss_dssp SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEE
T ss_pred cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEE
Confidence 999999999987531 1278898887764
No 127
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=9.7e-26 Score=228.11 Aligned_cols=234 Identities=14% Similarity=0.212 Sum_probs=174.9
Q ss_pred CccccccCC--------CCccceeecccccceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCce-------eeEeeccc
Q 008844 2 NAPIIDPLQ--------GDFPEVIEEYLEHGVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGI-------AKELRDKE 65 (551)
Q Consensus 2 nl~lwd~~~--------~~~~~~l~~~~h~~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~-------~~~~~~~~ 65 (551)
.|.||+... +..........|...|++++|+|++. +|++|+.||.|+||++.++.. ...+. .
T Consensus 152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~ 229 (430)
T 2xyi_A 152 DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT--G 229 (430)
T ss_dssp CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC--C
T ss_pred cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec--C
Confidence 478898875 11222222234888999999999998 999999999999999987432 23443 4
Q ss_pred ccccEEEEEecC-CCCEEEEEeCCCCEEEEEcCCCe---EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC
Q 008844 66 CVAAITSVCWSK-YGHRILVSAADKSLTLWDVLKGE---KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLS 141 (551)
Q Consensus 66 h~~~V~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~ 141 (551)
|...|.+++|+| ++.+|++++.|+.|++||++++. .+..+..+
T Consensus 230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~--------------------------------- 276 (430)
T 2xyi_A 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH--------------------------------- 276 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC---------------------------------
T ss_pred CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC---------------------------------
Confidence 589999999999 67899999999999999998762 22222211
Q ss_pred CCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC-EEEEEecCceEEEEECCC-CcEEEeeeccCccce
Q 008844 142 TGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD-LVYVGNSKGEILVIDHKS-NQIRALVPVSGAAVI 219 (551)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~i 219 (551)
...|++++|+|++. +|++|+.+|.|++||+++ ...+..+. .|...|
T Consensus 277 -------------------------------~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v 324 (430)
T 2xyi_A 277 -------------------------------TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEI 324 (430)
T ss_dssp -------------------------------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCE
T ss_pred -------------------------------CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCE
Confidence 12789999999986 788999999999999998 44555554 789999
Q ss_pred EEEEEeeCCC-EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 220 KNIVFSRNGQ-YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 220 ~~l~~s~~g~-~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
.+++|+|+++ +|++++.|+.|+|||+........ . ... .......+..+.+|...+. .+
T Consensus 325 ~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~-~~~-------------~~~~~~~~~~~~~h~~~v~-----~~ 384 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS-T-EDA-------------EDGPPELLFIHGGHTAKIS-----DF 384 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC-H-HHH-------------HHCCTTEEEECCCCSSCEE-----EE
T ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC-c-ccc-------------ccCCcceEEEcCCCCCCce-----EE
Confidence 9999999985 689999999999999432110000 0 000 0000234556667777777 89
Q ss_pred EEcCCCC-EEEEeeccCCcceEEEEecC
Q 008844 299 CFSGDGE-WVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 299 ~~s~dg~-~l~~gs~~~~dg~I~iwd~~ 325 (551)
+|+|++. +|++++. +|.|+||++.
T Consensus 385 ~~~p~~~~~l~s~s~---dg~i~iw~~~ 409 (430)
T 2xyi_A 385 SWNPNEPWIICSVSE---DNIMQVWQMA 409 (430)
T ss_dssp EECSSSTTEEEEEET---TSEEEEEEEC
T ss_pred EECCCCCCEEEEEEC---CCCEEEeEcc
Confidence 9999999 8889998 9999999997
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.5e-25 Score=228.56 Aligned_cols=290 Identities=12% Similarity=0.098 Sum_probs=215.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEc--CCCeEEEEEEc
Q 008844 30 AFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDV--LKGEKITRIVL 107 (551)
Q Consensus 30 ~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~--~~~~~~~~~~~ 107 (551)
+|+|++.++++++.+++|.+||..+++++.++... . .+.+++|+|+|++|++++.|++|.+||+ .+++.+..+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g--~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--Y-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS--T-TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC--c-ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 48999999999999999999999999999998743 2 2889999999999999999999999999 89999999998
Q ss_pred CCCeeEEEEec----CCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee
Q 008844 108 QQTPLQARLHP----GSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK 183 (551)
Q Consensus 108 ~~~~~~~~~~p----~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 183 (551)
...+..+.|+| ++. .+++++..++++.+||..+++.............. ........+.++.+++
T Consensus 221 g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~---------~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT---------QTYHPEPRVAAIIASH 289 (543)
T ss_dssp CSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS---------CCEESCCCEEEEEECS
T ss_pred CCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCc---------cccccCCceEEEEECC
Confidence 88889999999 764 24444446899999999988765432211000000 0000111678899999
Q ss_pred CCCE-EEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee-CCCeEEEEeCcCCccccchhhhhhhc
Q 008844 184 YGDL-VYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS-NDRTIRIYDNLLPLKNGLEALVDIEK 261 (551)
Q Consensus 184 ~g~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (551)
++.. +++...+|.|.+||+.+.+.+......+...+.+++|+|+|++|++++ .+++|.+||+.
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~--------------- 354 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK--------------- 354 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT---------------
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC---------------
Confidence 8755 455667899999999887654422224566788899999999876654 58999999922
Q ss_pred cCCCCCcceeeeeccceeeeeecc----cccccceeeeeeeEEcCC-CCEEEEeeccCCcceEEEEecC--------Cce
Q 008844 262 GIAEPNGIEKMKMVGSKCLALFRE----FQDSITKMHWKAPCFSGD-GEWVIAGSASKGEHKIYIWDRA--------GYL 328 (551)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~s~d-g~~l~~gs~~~~dg~I~iwd~~--------~~~ 328 (551)
.++++..+.. |..... . .++|+ |.+++++... +++|.||++. +++
T Consensus 355 --------------tg~l~~~i~~g~~ph~g~g~-----~-~~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 355 --------------DRRLSALVDVGKTPHPGRGA-----N-FVHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp --------------TTEEEEEEECSSSBCCTTCE-----E-EEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSE
T ss_pred --------------CCeEEEeeccCCCCCCCCCc-----c-cCCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeE
Confidence 2334444332 222111 1 24677 5556665421 7899999986 478
Q ss_pred eEEEecCCCceEEEEEecCCCeEEEEc-------CCCcEEEEecCCCCc
Q 008844 329 VKILEGPKEALIDLAWHPVHPIIVSVS-------LTGWVYIWAKDYTEN 370 (551)
Q Consensus 329 ~~~l~~h~~~v~~l~~sp~~~~l~s~s-------~dg~i~iW~~~~~~~ 370 (551)
++.+.+|...+..|+|||++++|++++ .+++|.|||+.+.+.
T Consensus 413 v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 413 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred EEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 899999998999999999999999987 267999999997653
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.5e-25 Score=243.14 Aligned_cols=316 Identities=14% Similarity=0.092 Sum_probs=221.1
Q ss_pred cceEEEEEEcCCCCEEEEEeC-CC-----eEEEEeccCCceeeEeeccccc----------------------ccEEEEE
Q 008844 23 HGVMKCIAFNRRGTLLAAGCS-DG-----SCVIWDFETRGIAKELRDKECV----------------------AAITSVC 74 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~-dg-----~I~iwd~~~~~~~~~~~~~~h~----------------------~~V~~l~ 74 (551)
...|.+++|||||++||+++. |+ .|++||+.+++....+..+.+. ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 8999999999887777655333 3488999
Q ss_pred ecCCCCEEEEEeCCCCEEEEEcCCC---eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccc
Q 008844 75 WSKYGHRILVSAADKSLTLWDVLKG---EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIA 151 (551)
Q Consensus 75 ~s~~g~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 151 (551)
|||||++|++++. +.|.+||+.++ ...........+..+.|+|++. .++.++ ++.|++||+.++....+...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~---~la~~~-~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG---FVSFIR-GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS---EEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC---EEEEEe-CCcEEEEecCCCCEEEeccC
Confidence 9999999999986 99999999888 5433333335678899999975 444444 56899999998776543221
Q ss_pred cCCCC-CCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc---------------------------------eE
Q 008844 152 VPDVA-NGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG---------------------------------EI 197 (551)
Q Consensus 152 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg---------------------------------~i 197 (551)
..... .+.. ..........+.+++|+|+|++|++++.++ .|
T Consensus 191 ~~~~~~~g~~-----~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 191 GSTTIGNGIA-----EFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCSSEEESCC-----CHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred Cccceecccc-----ceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 11000 0000 000000000257899999999999987765 89
Q ss_pred EEEECCC-CcEEEeeec-cCccceEEEEEeeCCCEEEEeeC-----CCeEEEEeCcCCccccchhhhhhhccCCCCCcce
Q 008844 198 LVIDHKS-NQIRALVPV-SGAAVIKNIVFSRNGQYLLTNSN-----DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIE 270 (551)
Q Consensus 198 ~i~d~~~-~~~~~~~~~-~~~~~i~~l~~s~~g~~l~t~s~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (551)
.+||+.+ ++....... .+...+..++| |+|++|++++. +..|++||+.
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~------------------------ 320 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA------------------------ 320 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT------------------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC------------------------
Confidence 9999998 876554322 36788999999 99999987654 5679999822
Q ss_pred eeeeccceeeeeeccccc-ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEEEecCCCceEEE-EEec
Q 008844 271 KMKMVGSKCLALFREFQD-SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPKEALIDL-AWHP 346 (551)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~~v~~l-~~sp 346 (551)
++.+...+..+.. .+. .+..++|+|||+++++++. ++.++||.+. +. ...+..|...|..+ .|+|
T Consensus 321 -----~g~~~~~~~~~~~~~~~--~~~~~~~spdg~~~~~~~~---~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 321 -----SNQQRVLAHETSPTWVP--LHNSLRFLDDGSILWSSER---TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp -----TCCEEEEEEEECSSCCC--CCSCCEECTTSCEEEEECT---TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET
T ss_pred -----CCceEEEEEcCCCCcCC--cCCceEECCCCeEEEEecC---CCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC
Confidence 1233333333322 110 1127899999998888877 7766666655 66 78888888888887 5999
Q ss_pred CCCeEEE-EcCCC--cEEEEecCC-CC-----------cceeecCCcceecee
Q 008844 347 VHPIIVS-VSLTG--WVYIWAKDY-TE-----------NWSAFAPDFKELEEN 384 (551)
Q Consensus 347 ~~~~l~s-~s~dg--~i~iW~~~~-~~-----------~~~~~spd~~~l~~~ 384 (551)
+++.|+. ++.++ .++||++.. +. ...+|+||++.+...
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDS 442 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEE
Confidence 9997755 44455 899999864 22 113799999987643
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.9e-25 Score=223.13 Aligned_cols=201 Identities=10% Similarity=0.021 Sum_probs=125.2
Q ss_pred CCCCCceEEEEee--------CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCC-EEEEeeCCCeEE
Q 008844 171 TPPFTPTAACFNK--------YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQ-YLLTNSNDRTIR 241 (551)
Q Consensus 171 ~~~~~i~~~~~s~--------~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~t~s~Dg~i~ 241 (551)
+|...|++++|+| ++++|++|+.|++|+|||+.++..+..+. .|...|.+++|+|++. +|++++.|++|+
T Consensus 134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~ 212 (393)
T 4gq1_A 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIR 212 (393)
T ss_dssp SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence 3455899999998 78999999999999999998887765554 7888999999999874 799999999999
Q ss_pred EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc-CCCCEEEEeeccCCcceEE
Q 008844 242 IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS-GDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s-~dg~~l~~gs~~~~dg~I~ 320 (551)
+||+....... ...... ......................+|...+. ++.|+ ++|+.|++++. |+.++
T Consensus 213 ~wd~~t~~~~~-~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~v~-----~v~~~~~dg~~l~s~s~---d~~i~ 280 (393)
T 4gq1_A 213 IFDWTLNLSAE-ENSQTE---LVKNPWLLTLNTLPLVNTCHSSGIASSLA-----NVRWIGSDGSGILAMCK---SGAWL 280 (393)
T ss_dssp EEETTCCC--------------CSCCCSEEEESGGGC------CCSSSCS-----EEEEETTTTCEEEEECT---TSEEE
T ss_pred EEECCCCcccc-cccccC---CcccceEEecccccceeeeecccccccce-----eeeeecCCCCEEEEEeC---CCCEE
Confidence 99944322110 000000 00000000011111111222345566665 67775 89999999999 99999
Q ss_pred EEecC-CceeEEEecCCCceEEEEEe------------------c--CCCeEEEEcCCCcEEEEecCCCCcc--------
Q 008844 321 IWDRA-GYLVKILEGPKEALIDLAWH------------------P--VHPIIVSVSLTGWVYIWAKDYTENW-------- 371 (551)
Q Consensus 321 iwd~~-~~~~~~l~~h~~~v~~l~~s------------------p--~~~~l~s~s~dg~i~iW~~~~~~~~-------- 371 (551)
+||+. +.....+..|...+..+.+. | ++.++++++.||.|+||++.+++..
T Consensus 281 vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~ 360 (393)
T 4gq1_A 281 RWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM 360 (393)
T ss_dssp EEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS
T ss_pred EEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC
Confidence 99998 77666666665544444333 3 3346778888999999999887633
Q ss_pred ----eeecCCcceecee
Q 008844 372 ----SAFAPDFKELEEN 384 (551)
Q Consensus 372 ----~~~spd~~~l~~~ 384 (551)
.+|+|||+.|+..
T Consensus 361 ~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 361 PIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp CEEEEEECTTSSEEEEE
T ss_pred cEEEEEEcCCCCEEEEE
Confidence 2799999998754
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.8e-25 Score=224.56 Aligned_cols=281 Identities=17% Similarity=0.150 Sum_probs=205.2
Q ss_pred ceEEEEEEcCCCC-EEEEEe----CCC----eEEEEec--cCCceeeE--eecccccccEEEEEecC-------------
Q 008844 24 GVMKCIAFNRRGT-LLAAGC----SDG----SCVIWDF--ETRGIAKE--LRDKECVAAITSVCWSK------------- 77 (551)
Q Consensus 24 ~~V~~l~fs~dg~-~latg~----~dg----~I~iwd~--~~~~~~~~--~~~~~h~~~V~~l~~s~------------- 77 (551)
..+...+|++.|. ++++|+ .+| .|+|||+ .+++.+.. +.+| ...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVN--KQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEEC--GGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcC--hhHHHHHHHHHHHHHHHHHcCCCC
Confidence 4567778888774 666876 467 8999999 88887744 5554 77787777764
Q ss_pred -CCCEEEEEeCC------CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC---CcEEEEcCCCceee
Q 008844 78 -YGHRILVSAAD------KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS---APMIVDLSTGSTSI 147 (551)
Q Consensus 78 -~g~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~ 147 (551)
.+..|+.++.+ +.|++||+..+...........+..+.|+|++. .+++++.++ .+++||+.+++...
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~---~la~~s~~~~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQ 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSS---EEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCcEEE
Confidence 15566666553 799999997554433334455788999999875 567776664 89999999887654
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEE-EEecCc--eEEEEECCCCcEEEeeeccCccceEEEEE
Q 008844 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVY-VGNSKG--EILVIDHKSNQIRALVPVSGAAVIKNIVF 224 (551)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~ 224 (551)
+.. +...+.+++|+|+|++|+ +++.+| .|++||+.+++..... .|...+.+++|
T Consensus 218 l~~---------------------~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~ 274 (415)
T 2hqs_A 218 VAS---------------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTW 274 (415)
T ss_dssp EEC---------------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC--CCSSCEEEEEE
T ss_pred eec---------------------CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCc--CCCCcccceEE
Confidence 321 112688999999999887 565555 4999999998875443 67788999999
Q ss_pred eeCCCEEEEeeC-CC--eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 225 SRNGQYLLTNSN-DR--TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 225 s~~g~~l~t~s~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
+|+|++|++++. ++ .|++||+. +.. ...+..+...+. .++|+
T Consensus 275 spdg~~l~~~s~~~g~~~i~~~d~~-----------------------------~~~-~~~l~~~~~~~~-----~~~~s 319 (415)
T 2hqs_A 275 FPDSQNLAFTSDQAGRPQVYKVNIN-----------------------------GGA-PQRITWEGSQNQ-----DADVS 319 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETT-----------------------------SSC-CEECCCSSSEEE-----EEEEC
T ss_pred CCCCCEEEEEECCCCCcEEEEEECC-----------------------------CCC-EEEEecCCCccc-----CeEEC
Confidence 999999988876 45 56666721 111 222223333333 78999
Q ss_pred CCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCC---cEEEEecCCCC
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG---WVYIWAKDYTE 369 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg---~i~iW~~~~~~ 369 (551)
|+|++|++++...++..|++||+. ++. ..+..|. .+.+++|+|++++|++++.++ .|++|++....
T Consensus 320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 999999998874334789999999 655 4566564 899999999999999988866 79999987543
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=3.8e-24 Score=232.03 Aligned_cols=305 Identities=11% Similarity=0.079 Sum_probs=216.9
Q ss_pred CccccccCCCCccceeeccccc----------------------ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--e
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEH----------------------GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG--I 57 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~----------------------~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~--~ 57 (551)
+|.+||..+++....+....+. ..|.+++|||||++|++++. +.|++||+.++. .
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA 143 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence 4788999888765555432222 34889999999999999886 999999999872 3
Q ss_pred eeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCC-----------------eeEEEEecCC
Q 008844 58 AKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQT-----------------PLQARLHPGS 120 (551)
Q Consensus 58 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----------------~~~~~~~p~~ 120 (551)
...+..+ ...+.+++|||||++|++++ ++.|.+||+.++........+.. +..+.|+|++
T Consensus 144 ~~~l~~~--~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg 220 (741)
T 2ecf_A 144 VRQLTHG--EGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD 220 (741)
T ss_dssp CCBCCCS--SSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS
T ss_pred EEEcccC--CcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC
Confidence 3445444 78899999999999999988 56899999998876654443332 3668999987
Q ss_pred CCCcEEEEeeCCC---------------------------------CcEEEEcCC-CceeeeccccCCCCCCCCCCCCCC
Q 008844 121 STPSLCLACPLSS---------------------------------APMIVDLST-GSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 121 ~~~~~~~~~~~~~---------------------------------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
. .+++++.++ .+.+||+.+ +....+...
T Consensus 221 ~---~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--------------- 282 (741)
T 2ecf_A 221 S---AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG--------------- 282 (741)
T ss_dssp S---CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC---------------
T ss_pred C---EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC---------------
Confidence 5 344443332 567777777 654433211
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEec-----CceEEEEECCCCcEEEeeeccCcc---ceEEEEEeeCCCEEEEeeCCC
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNS-----KGEILVIDHKSNQIRALVPVSGAA---VIKNIVFSRNGQYLLTNSNDR 238 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~~~~~---~i~~l~~s~~g~~l~t~s~Dg 238 (551)
..+...+..++| |+|++|++++. +..|++||+.+++....+...... .+..++|+|+|++|++++.||
T Consensus 283 ---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g 358 (741)
T 2ecf_A 283 ---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG 358 (741)
T ss_dssp ---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS
T ss_pred ---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC
Confidence 012237889999 99999987764 578999999999887766422222 456899999999999999999
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee-EEcCCCCEEEEeeccCCcc
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP-CFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~s~dg~~l~~gs~~~~dg 317 (551)
.++||.+. .. +. ...+..+...+. .+ .|+|+|++|++.+...+..
T Consensus 359 ~~~l~~~~---------------------------~~-~~-~~~l~~~~~~v~-----~~~~~s~dg~~l~~~~~~~~~~ 404 (741)
T 2ecf_A 359 FQHLYRID---------------------------SK-GK-AAALTHGNWSVD-----ELLAVDEKAGLAYFRAGIESAR 404 (741)
T ss_dssp SCEEEEEC---------------------------SS-SC-EEESCCSSSCEE-----EEEEEETTTTEEEEEECSSCTT
T ss_pred ccEEEEEc---------------------------CC-CC-eeeeeecceEEE-----eEeEEeCCCCEEEEEEeCCCCc
Confidence 88888721 11 12 344444444443 44 6999999887665522122
Q ss_pred eEEEEecC--CceeEEEecCCCceEEEEEecCCCeEEEEcCC----CcEEEEecCC
Q 008844 318 KIYIWDRA--GYLVKILEGPKEALIDLAWHPVHPIIVSVSLT----GWVYIWAKDY 367 (551)
Q Consensus 318 ~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~d----g~i~iW~~~~ 367 (551)
.++||++. +..+..+.. ...+..++|+|++++|+....+ +.+++|+...
T Consensus 405 ~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 405 ESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp CBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred eEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 88999886 666777765 6678899999999988766543 4688888754
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=5.4e-24 Score=238.91 Aligned_cols=330 Identities=13% Similarity=0.051 Sum_probs=227.1
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC------CeEEEEeccCCceeeEeecccccccE-----
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD------GSCVIWDFETRGIAKELRDKECVAAI----- 70 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d------g~I~iwd~~~~~~~~~~~~~~h~~~V----- 70 (551)
.|.+|+...++. ..+.. |.+.+.+++|||||++||+++.+ ..|++|++.++. ...+..| ...+
T Consensus 34 ~l~~~~~~gg~~-~~lt~--~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~--~~~~~~~~~ 107 (1045)
T 1k32_A 34 DLWEHDLKSGST-RKIVS--NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYF--SGKSTGRRM 107 (1045)
T ss_dssp EEEEEETTTCCE-EEEEC--SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCC--CEEEETTEE
T ss_pred cEEEEECCCCcE-EEeee--CCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccC--CCccccccc
Confidence 367888877653 34433 78899999999999999988643 479999998776 5566555 6777
Q ss_pred --EEEEecCCCCEEEEEeCC------CCEEEEEcCCCeEEEEEEc-----------------------------------
Q 008844 71 --TSVCWSKYGHRILVSAAD------KSLTLWDVLKGEKITRIVL----------------------------------- 107 (551)
Q Consensus 71 --~~l~~s~~g~~l~s~s~d------g~i~vwd~~~~~~~~~~~~----------------------------------- 107 (551)
.+++|+|||+++++++.+ ..|.+|++.++........
T Consensus 108 ~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~l 187 (1045)
T 1k32_A 108 FTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKI 187 (1045)
T ss_dssp CSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEE
T ss_pred ccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCE
Confidence 999999999977777754 3578888877654321111
Q ss_pred ---------------CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC--Cceeeecc-------ccCCCCCCCCC--
Q 008844 108 ---------------QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST--GSTSILPI-------AVPDVANGIAP-- 161 (551)
Q Consensus 108 ---------------~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~--~~~~~~~~-------~~~~~~~~~~~-- 161 (551)
...+..+.|+++ .+++++..++.+.+|.+.. +....+.. ........+..
T Consensus 188 w~~~~~~~~~~l~~~~~~v~~~~~s~d----~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~ 263 (1045)
T 1k32_A 188 WIEVNSGAFKKIVDMSTHVSSPVIVGH----RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK 263 (1045)
T ss_dssp EEEEETTEEEEEECCSSCCEEEEEETT----EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE
T ss_pred EEECCCCCeEECcCCCCcccceEEeCC----EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe
Confidence 011223334443 3556667778888887653 22221110 00000000000
Q ss_pred ---------CCCCCCCCCC-----------CCCCceEEEEe-eCCCEEEEEecCceEEEEECCCCcEEEeeeccCcc-ce
Q 008844 162 ---------SSRNKYSDGT-----------PPFTPTAACFN-KYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAA-VI 219 (551)
Q Consensus 162 ---------~~~~~~~~~~-----------~~~~i~~~~~s-~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-~i 219 (551)
.......... +...+.+++|+ |+|++|++++ ++.|.+|++.++...... .+.. .+
T Consensus 264 ~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~--~~~~~~~ 340 (1045)
T 1k32_A 264 GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP--EPLRIRY 340 (1045)
T ss_dssp TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS--CCSCEEE
T ss_pred CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEcc--CCCcceE
Confidence 0000000000 12258899999 9999888887 889999999988766543 5555 89
Q ss_pred EEEEEeeCCCEEEEeeCCCeEE-EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 220 KNIVFSRNGQYLLTNSNDRTIR-IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
..++|+ +|+.|++++.++.|. +|++.. .. ...+..+...+. .+
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-----------------------------~~-~~~l~~~~~~~~-----~~ 384 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRT-----------------------------GK-AEKFEENLGNVF-----AM 384 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTT-----------------------------CC-EEECCCCCCSEE-----EE
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCC-----------------------------CC-ceEecCCcccee-----ee
Confidence 999999 999999998888888 888211 11 222224444444 88
Q ss_pred EEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCC----------cEEEEecCC
Q 008844 299 CFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG----------WVYIWAKDY 367 (551)
Q Consensus 299 ~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg----------~i~iW~~~~ 367 (551)
+|||||++|++++. ++.|++||+. ++....+.+|...+.+++|+|++++|++++.++ .|++|++.+
T Consensus 385 ~~SpDG~~la~~~~---~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 385 GVDRNGKFAVVAND---RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EECCCCCEEEEECC---CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 99999999999998 8999999999 888888878999999999999999999887644 899999987
Q ss_pred CCcc-----------eeecCCcceece
Q 008844 368 TENW-----------SAFAPDFKELEE 383 (551)
Q Consensus 368 ~~~~-----------~~~spd~~~l~~ 383 (551)
++.. .+|+|||+.|..
T Consensus 462 g~~~~l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 462 RKIFAATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp TEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred CcEEEeeCCCcccCCceEcCCCCEEEE
Confidence 5411 269999987753
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=7.6e-23 Score=199.13 Aligned_cols=277 Identities=11% Similarity=0.099 Sum_probs=194.4
Q ss_pred EEEcCCCCE-EEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC-CCCEEEEEcCCCeE-EEEE
Q 008844 29 IAFNRRGTL-LAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA-DKSLTLWDVLKGEK-ITRI 105 (551)
Q Consensus 29 l~fs~dg~~-latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~vwd~~~~~~-~~~~ 105 (551)
..|.+++.+ +++++.++.|.+||+.+++....+..+ ...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG--YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC--CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc--CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 346666554 667778899999999999988887754 5566 9999999997777766 88999999999987 7777
Q ss_pred EcCCCeeE-EEEecCCCCCcEEEEeeCCC---CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 106 VLQQTPLQ-ARLHPGSSTPSLCLACPLSS---APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 106 ~~~~~~~~-~~~~p~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
..+..+.. +.|+|++. ++++...++ .+.+||+.++........ ...+.+++|
T Consensus 80 ~~~~~~~~~~~~s~dg~---~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------------------~~~~~~~~~ 135 (331)
T 3u4y_A 80 QEGQSSMADVDITPDDQ---FAVTVTGLNHPFNMQSYSFLKNKFISTIPI---------------------PYDAVGIAI 135 (331)
T ss_dssp EECSSCCCCEEECTTSS---EEEECCCSSSSCEEEEEETTTTEEEEEEEC---------------------CTTEEEEEE
T ss_pred ccCCCCccceEECCCCC---EEEEecCCCCcccEEEEECCCCCeEEEEEC---------------------CCCccceEE
Confidence 77777777 99999865 455444442 899999998876443111 115689999
Q ss_pred eeCCCEEEEE-ecCce-EEEEECCCCcEEEe---eeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEeCcCCccccchh
Q 008844 182 NKYGDLVYVG-NSKGE-ILVIDHKSNQIRAL---VPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 182 s~~g~~l~~g-~~dg~-i~i~d~~~~~~~~~---~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
+|+|++++++ ..++. |.+|++.....+.. ........+..++|+|+|++|+++ ..++.|++||+..
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-------- 207 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-------- 207 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS--------
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC--------
Confidence 9999866555 45577 99999876433211 111445668999999999966555 4689999999321
Q ss_pred hhhhhccCCCCCcceeeeecccee---eeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce--e
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKC---LALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL--V 329 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~--~ 329 (551)
... +..+... ..+. .++|+|+|++|+++... ++.|.+||+. +++ +
T Consensus 208 ---------------------~~~~~~~~~~~~~-~~~~-----~~~~spdg~~l~v~~~~--~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 208 ---------------------PENITLLNAVGTN-NLPG-----TIVVSRDGSTVYVLTES--TVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp ---------------------TTSCEEEEEEECS-SCCC-----CEEECTTSSEEEEECSS--EEEEEEEETTTTEEEEE
T ss_pred ---------------------CcccceeeeccCC-CCCc-----eEEECCCCCEEEEEEcC--CCEEEEEECCCCceeee
Confidence 111 2222221 2223 78999999988776542 6889999999 766 4
Q ss_pred EEEecC----CCc---eEEEEEecCCCeEEEEcC-CCcEEEEecCCCC
Q 008844 330 KILEGP----KEA---LIDLAWHPVHPIIVSVSL-TGWVYIWAKDYTE 369 (551)
Q Consensus 330 ~~l~~h----~~~---v~~l~~sp~~~~l~s~s~-dg~i~iW~~~~~~ 369 (551)
..+..+ ..+ ...++|+|++++|++++. ++.|.+|++....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 444332 222 355899999998866554 7799999998643
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=7.8e-23 Score=199.08 Aligned_cols=290 Identities=11% Similarity=0.085 Sum_probs=202.9
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC-CCeEEEEeccCCce-eeEeecccccccEEEEEecCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS-DGSCVIWDFETRGI-AKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~-dg~I~iwd~~~~~~-~~~~~~~~h~~~V~~l~~s~~g 79 (551)
.|.+||+.+++....+.. +...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+ ..++.+++|+|+|
T Consensus 21 ~v~~~d~~~~~~~~~~~~--~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg 95 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITL--GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG--QSSMADVDITPDD 95 (331)
T ss_dssp EEEEEETTTCCEEEEEEC--CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC--SSCCCCEEECTTS
T ss_pred eEEEEeCcccceeeeEEc--cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC--CCCccceEECCCC
Confidence 478999999887666653 45556 9999999997776665 88999999999987 6666554 5555559999999
Q ss_pred CEEEEEeCCC---CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCC-cEEEEcCCCceeeecc-ccCC
Q 008844 80 HRILVSAADK---SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSA-PMIVDLSTGSTSILPI-AVPD 154 (551)
Q Consensus 80 ~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-i~i~d~~~~~~~~~~~-~~~~ 154 (551)
++|+++..++ .|.+||+.+++.+..+..+..+..+.|+|++. .++++...++. +.+|++.......... ...
T Consensus 96 ~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~- 172 (331)
T 3u4y_A 96 QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGN--GLILIDRSSANTVRRFKIDADGVLFDTGQEFI- 172 (331)
T ss_dssp SEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSS--CEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-
T ss_pred CEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCC--EEEEEecCCCceEEEEEECCCCcEeecCCccc-
Confidence 9999555553 89999999999999998888889999999875 36667677788 9999998644321110 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCCCcE---EEeeeccCccceEEEEEeeCCCE
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQI---RALVPVSGAAVIKNIVFSRNGQY 230 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~l~~s~~g~~ 230 (551)
.....+..++|+|+|+++++++ .++.|.+||+.+++. +..+. ....+..++|+|+|++
T Consensus 173 ----------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~ 234 (331)
T 3u4y_A 173 ----------------SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGST 234 (331)
T ss_dssp ----------------CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSE
T ss_pred ----------------cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCE
Confidence 0111578999999999666554 689999999999887 66663 4567789999999997
Q ss_pred EEEee-CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc----cccccceeeeeeeEEcCCCC
Q 008844 231 LLTNS-NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE----FQDSITKMHWKAPCFSGDGE 305 (551)
Q Consensus 231 l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~s~dg~ 305 (551)
|++++ .++.|.+||..... ...+..+.. ....... .+.++|+|+|+
T Consensus 235 l~v~~~~~~~i~~~d~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~ 285 (331)
T 3u4y_A 235 VYVLTESTVDVFNFNQLSGT---------------------------LSFVKSFGHGLLIDPRPLFG--ANQMALNKTET 285 (331)
T ss_dssp EEEECSSEEEEEEEETTTTE---------------------------EEEEEEEECCCCCCCGGGTT--CCCEEECTTSS
T ss_pred EEEEEcCCCEEEEEECCCCc---------------------------eeeecccccccccCCCCccc--ccceEECCCCC
Confidence 76654 57889999932110 000111110 1111110 02579999999
Q ss_pred EEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecCC
Q 008844 306 WVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVH 348 (551)
Q Consensus 306 ~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~ 348 (551)
+|++++.. ++.|.||++....+..+.+....-....++|+.
T Consensus 286 ~l~v~~~~--~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 286 KLFISANI--SRELKVFTISGKVVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEEEETT--TTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred EEEEecCC--CCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence 99777652 579999999965565555444333334445543
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=5.9e-23 Score=200.68 Aligned_cols=282 Identities=10% Similarity=0.106 Sum_probs=188.4
Q ss_pred EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC-CCEEEEEcC--CCe--EEEEEEcCCCe
Q 008844 37 LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD-KSLTLWDVL--KGE--KITRIVLQQTP 111 (551)
Q Consensus 37 ~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d-g~i~vwd~~--~~~--~~~~~~~~~~~ 111 (551)
++++++.++.|++|++........+....|...+.+++|+|++++|++++.+ +.|.+|++. ++. .+..+..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 4444477999999999632211222212346789999999999999998886 999999997 555 44555555678
Q ss_pred eEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE
Q 008844 112 LQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG 191 (551)
Q Consensus 112 ~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g 191 (551)
..+.|+|++. .+++++..++.+.+|++..+.......... ....+.+++|+|+|++|+++
T Consensus 87 ~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------------~~~~~~~~~~s~dg~~l~~~ 146 (343)
T 1ri6_A 87 THISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVE------------------GLDGCHSANISPDNRTLWVP 146 (343)
T ss_dssp SEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEEC------------------CCTTBCCCEECTTSSEEEEE
T ss_pred cEEEEcCCCC--EEEEEecCCCeEEEEECCCCcccccccccc------------------CCCCceEEEECCCCCEEEEe
Confidence 8999999864 244455558889999996332211111110 01157889999999988888
Q ss_pred e-cCceEEEEECCC-CcEEE----eeeccCccceEEEEEeeCCCEEEEee-CCCeEEEEeCcCCccccchhhhhhhccCC
Q 008844 192 N-SKGEILVIDHKS-NQIRA----LVPVSGAAVIKNIVFSRNGQYLLTNS-NDRTIRIYDNLLPLKNGLEALVDIEKGIA 264 (551)
Q Consensus 192 ~-~dg~i~i~d~~~-~~~~~----~~~~~~~~~i~~l~~s~~g~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (551)
+ .++.|.+||+.+ ++... .+.......+.+++|+|++++|++++ .++.|.+|++... ...
T Consensus 147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-~g~------------ 213 (343)
T 1ri6_A 147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP-HGN------------ 213 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT-TSC------------
T ss_pred cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCc------------
Confidence 7 899999999987 65532 22323456788999999999776554 7899999993210 000
Q ss_pred CCCcceeeeeccceeeeeecccccccc-eeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--C---ceeEEEecCCCc
Q 008844 265 EPNGIEKMKMVGSKCLALFREFQDSIT-KMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--G---YLVKILEGPKEA 338 (551)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~---~~~~~l~~h~~~ 338 (551)
............... ......++|+|+|++|+++... ++.|++|++. + +.+..+..+..
T Consensus 214 ------------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~- 278 (343)
T 1ri6_A 214 ------------IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT--ASLITVFSVSEDGSVLSKEGFQPTETQ- 278 (343)
T ss_dssp ------------CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCCEEEEEEEECSSS-
T ss_pred ------------EEEEeeccccCccccccCCccceEECCCCCEEEEEecC--CCEEEEEEEcCCCCceEEeeeecCCCc-
Confidence 000111110000000 0112268999999988865531 7899999997 2 23444554444
Q ss_pred eEEEEEecCCCeEEEEc-CCCcEEEEecC
Q 008844 339 LIDLAWHPVHPIIVSVS-LTGWVYIWAKD 366 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s-~dg~i~iW~~~ 366 (551)
+..++|+|++++|++++ .++.|.+|+++
T Consensus 279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 279 PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 89999999999888887 58999999765
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.3e-23 Score=226.50 Aligned_cols=304 Identities=16% Similarity=0.124 Sum_probs=208.6
Q ss_pred ccccccCCCCcc-ceeecccc---------------cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccc
Q 008844 3 APIIDPLQGDFP-EVIEEYLE---------------HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKEC 66 (551)
Q Consensus 3 l~lwd~~~~~~~-~~l~~~~h---------------~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h 66 (551)
| +||+.+++.. ..+..... ...|.+++|||+ .+|+.+. ++.|++||+.+++..... .+
T Consensus 46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~-~~-- 119 (706)
T 2z3z_A 46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF-DT-- 119 (706)
T ss_dssp E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE-CC--
T ss_pred E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc-CC--
Confidence 5 8898888762 33322110 146999999999 6666553 599999999988765443 23
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-----CeEEEEEEcCCC---------------eeEEEEecCCCCCcEE
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLK-----GEKITRIVLQQT---------------PLQARLHPGSSTPSLC 126 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~---------------~~~~~~~p~~~~~~~~ 126 (551)
...+.+++|+|+|++|+++ .++.|.+|++.+ ++.......+.. +..+.|+|++. .+
T Consensus 120 ~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~---~l 195 (706)
T 2z3z_A 120 NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS---CL 195 (706)
T ss_dssp TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS---EE
T ss_pred cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC---EE
Confidence 5678899999999999986 589999999998 776554443333 36889999875 45
Q ss_pred EEee---------------------------------CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 127 LACP---------------------------------LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 127 ~~~~---------------------------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
++++ .+..+.+||+.++....+... ..+.
T Consensus 196 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~------------------~~~~ 257 (706)
T 2z3z_A 196 AFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG------------------EPKE 257 (706)
T ss_dssp EEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC------------------SCTT
T ss_pred EEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC------------------CCCc
Confidence 5554 345688999988775433211 1122
Q ss_pred CCceEEEEeeCCCEEEEEecCc-----eEEEEECCCC-cEEEeeeccCcc---ceEEEEEee--CCCEEEEeeCCCeEEE
Q 008844 174 FTPTAACFNKYGDLVYVGNSKG-----EILVIDHKSN-QIRALVPVSGAA---VIKNIVFSR--NGQYLLTNSNDRTIRI 242 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg-----~i~i~d~~~~-~~~~~~~~~~~~---~i~~l~~s~--~g~~l~t~s~Dg~i~i 242 (551)
..+.+++|+|+|++|++++.++ .|.+||+.++ .........+.. .+.+++|+| +|++|++++.|+.++|
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l 337 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL 337 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence 3688999999999999887765 9999999998 443333212222 246789999 9999999999999999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeee-eEEcCCCCEEEEeeccCC--cceE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKA-PCFSGDGEWVIAGSASKG--EHKI 319 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~s~dg~~l~~gs~~~~--dg~I 319 (551)
|.+.. .+..+..+..+...+. . ++|+|+|++|++++...+ ...|
T Consensus 338 ~~~~~----------------------------~~~~~~~l~~~~~~v~-----~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 338 YLYDT----------------------------TGRLIRQVTKGEWEVT-----NFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp EEEET----------------------------TSCEEEECCCSSSCEE-----EEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred EEEEC----------------------------CCCEEEecCCCCeEEE-----eeeEEcCCCCEEEEEecCCCCceEEE
Confidence 98210 1233444444444443 3 799999999887766321 1267
Q ss_pred EEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCC----CcEEEEecCCCC
Q 008844 320 YIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLT----GWVYIWAKDYTE 369 (551)
Q Consensus 320 ~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~d----g~i~iW~~~~~~ 369 (551)
+.|++. +. +..+. |...+.+++|+|++++|+..+.+ +.|++|++.+++
T Consensus 385 ~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 385 YCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 777877 44 44454 66779999999999988776443 569999998765
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=4.9e-22 Score=195.07 Aligned_cols=273 Identities=16% Similarity=0.132 Sum_probs=207.1
Q ss_pred ccceEEEEEEcCCCCEEEEEeC-------CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE-eCCCCEEE
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCS-------DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS-AADKSLTL 93 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~-------dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~v 93 (551)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+.+++|+|+|++|+++ ..++.|.+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---LKPFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---SCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---CCcceEEECCCCCEEEEEecCCCEEEE
Confidence 4466889999999999888874 468999999999988888643 457889999999966555 44799999
Q ss_pred EEcCCCeEEEEEEcCCC----------eeEEEEecCCCCCcEEEEe-eCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 94 WDVLKGEKITRIVLQQT----------PLQARLHPGSSTPSLCLAC-PLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~~----------~~~~~~~p~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
||+.+++.+..+..+.. +..+.++|++. .++++. ..++.+.+||+.+++........
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------- 183 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIKLKTAIQNT---------- 183 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTEEEEEECCC----------
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCceEEEecCC----------
Confidence 99999999888877542 57789999864 244444 35788999999988765432100
Q ss_pred CCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec---cCccceEEEEEeeCCCEEEEeeC-CC
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV---SGAAVIKNIVFSRNGQYLLTNSN-DR 238 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~l~~s~~g~~l~t~s~-Dg 238 (551)
...+.+++|+|+|+++++++.++.|.+||+.+++....+.. .+...+.+++|+|+|++|++++. ++
T Consensus 184 ----------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 253 (353)
T 3vgz_A 184 ----------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA 253 (353)
T ss_dssp ----------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred ----------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence 11467889999999999999999999999999998877754 24556888999999998777665 59
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
.|.+||... ...+..+.... . . .++|+|+|++|+++... ++.
T Consensus 254 ~v~~~d~~~-----------------------------~~~~~~~~~~~-~-~-----~~~~s~dg~~l~v~~~~--~~~ 295 (353)
T 3vgz_A 254 EVLVVDTRN-----------------------------GNILAKVAAPE-S-L-----AVLFNPARNEAYVTHRQ--AGK 295 (353)
T ss_dssp EEEEEETTT-----------------------------CCEEEEEECSS-C-C-----CEEEETTTTEEEEEETT--TTE
T ss_pred EEEEEECCC-----------------------------CcEEEEEEcCC-C-c-----eEEECCCCCEEEEEECC--CCe
Confidence 999999211 22222222111 1 2 78999999977776632 789
Q ss_pred EEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCC
Q 008844 319 IYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTG 358 (551)
Q Consensus 319 I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg 358 (551)
|.+||+. ++.+..+..+ ..+..++|+|++++|+++..++
T Consensus 296 v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 296 VSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999999 8888888754 4689999999999777766543
No 139
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=3.9e-23 Score=217.55 Aligned_cols=277 Identities=12% Similarity=0.043 Sum_probs=202.0
Q ss_pred ccceEEEEEEcCCCCEEEEEeC-CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC---CCCEEEEEcC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCS-DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA---DKSLTLWDVL 97 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~vwd~~ 97 (551)
+..+|.+++|+|||++||+++. +|+++||++.++.. ..+..+ +...+.+++|+|+ +++++++. +....||.+.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~-~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNRE-PINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSS-CCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eeeecc-cccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 3467999999999999999887 99999999966554 444433 2368999999999 77777765 4556676554
Q ss_pred C---CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 98 K---GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 98 ~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
. +... .+..........|+|++.. .+++....+.+.+||+.++....+...
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~--~~~~s~~~~~~~l~d~~~g~~~~l~~~----------------------- 150 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGEA--VVFTGATEDRVALYALDGGGLRELARL----------------------- 150 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSSC--EEEEEECSSCEEEEEEETTEEEEEEEE-----------------------
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCCe--EEEEecCCCCceEEEccCCcEEEeecC-----------------------
Confidence 3 3322 4433444556788888743 556666677777999998876544211
Q ss_pred CceEEEEeeCCCEEEEEecC----ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC--eEEEEeCcCC
Q 008844 175 TPTAACFNKYGDLVYVGNSK----GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR--TIRIYDNLLP 248 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg--~i~iwd~~~~ 248 (551)
...+++|+|+|++|++++.+ +.|++||+.+++..... .+...+..++|+|||++|+++..++ .|++||+.
T Consensus 151 ~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~-- 226 (582)
T 3o4h_A 151 PGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPR-- 226 (582)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT--
T ss_pred CCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCC--
Confidence 12688999999999988877 78999999998876543 6778899999999999999888888 89999822
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee---eeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM---HWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
++... .+..+...+... .+...+|+|||.++++++. ++.++||++
T Consensus 227 ---------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~---~g~~~l~~~- 274 (582)
T 3o4h_A 227 ---------------------------DGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR---EGRSAVFID- 274 (582)
T ss_dssp ---------------------------TCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE---TTEEEEEET-
T ss_pred ---------------------------CCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc---CCcEEEEEE-
Confidence 12222 444444444411 1113349999988888888 899999999
Q ss_pred CceeEEEecCCCceEEEEEecCCCeEEEEcCCCc---EEEEecCC
Q 008844 326 GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGW---VYIWAKDY 367 (551)
Q Consensus 326 ~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~---i~iW~~~~ 367 (551)
|+.+. .+.+.|.+++|+ ++.++++++.+.. |++|+...
T Consensus 275 g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 275 GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 76554 345678999999 9999988887644 67777653
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=4.8e-23 Score=196.54 Aligned_cols=254 Identities=15% Similarity=0.130 Sum_probs=184.1
Q ss_pred EEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-CeEEEEEEcC--CCeeEEEE
Q 008844 40 AGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK-GEKITRIVLQ--QTPLQARL 116 (551)
Q Consensus 40 tg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~--~~~~~~~~ 116 (551)
.++.++.|++||+.+++..... .+ ...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ..+..+.|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~-~~--~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW-QT--PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE-EE--SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCCceeeec-cC--CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 3457899999999988766443 33 78999999999999999987 78999999998 8776655554 34677899
Q ss_pred ecCCCCCcEEEEee--CCCCcEEEEc--CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEE-EE
Q 008844 117 HPGSSTPSLCLACP--LSSAPMIVDL--STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVY-VG 191 (551)
Q Consensus 117 ~p~~~~~~~~~~~~--~~~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~g 191 (551)
+|++. .++++. .++...+|.+ .++....+.. ...+.+++|+|+|++|+ ++
T Consensus 93 spdg~---~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------------~~~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 93 SPDGA---LYAISDKVEFGKSAIYLLPSTGGTPRLMTK----------------------NLPSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp CTTSS---EEEEEECTTTSSCEEEEEETTCCCCEECCS----------------------SSSEEEEEECTTSSEEEEEE
T ss_pred CCCCC---EEEEEEeCCCCcceEEEEECCCCceEEeec----------------------CCCccceEECCCCCEEEEEE
Confidence 99864 566666 3345566554 4443222110 01478899999999877 67
Q ss_pred ecCceEEEEEC--CCCcEEEeeeccCccceEEEEEeeCCCEEEEee-CCCeEEEEeCcCCccccchhhhhhhccCCCCCc
Q 008844 192 NSKGEILVIDH--KSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS-NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNG 268 (551)
Q Consensus 192 ~~dg~i~i~d~--~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (551)
..++.+.||++ .++...... .+...+.+++|+|+|++|++++ .++.++||++...
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~-------------------- 205 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLT--HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD-------------------- 205 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECC--CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------------------
T ss_pred CCCCceEEEEEECCCCcceEcc--cCCCccccceECCCCCEEEEEecCCCCccEEEECCC--------------------
Confidence 78898888885 455544333 6778899999999999888766 5899999982111
Q ss_pred ceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC--------CcceEEEEecC-Cce--eEEEecCCC
Q 008844 269 IEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK--------GEHKIYIWDRA-GYL--VKILEGPKE 337 (551)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~--------~dg~I~iwd~~-~~~--~~~l~~h~~ 337 (551)
...+..+..+...+. .++|+|+|++|++++.+. +.+.|++||+. ++. +..+.+|..
T Consensus 206 --------~~~~~~~~~~~~~~~-----~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 272 (297)
T 2ojh_A 206 --------GSSVERITDSAYGDW-----FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG 272 (297)
T ss_dssp --------SSCEEECCCCSEEEE-----EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT
T ss_pred --------CCCcEEEecCCcccC-----CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc
Confidence 222334444444443 789999999999888731 12679999998 654 444557888
Q ss_pred ceEEEEEecCCCeEEEEcCC
Q 008844 338 ALIDLAWHPVHPIIVSVSLT 357 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s~d 357 (551)
.+..++|+|++++|++++.+
T Consensus 273 ~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEEC
T ss_pred ccccceECCCCCEEEEEEec
Confidence 99999999999999888764
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.8e-22 Score=195.85 Aligned_cols=290 Identities=11% Similarity=0.090 Sum_probs=193.7
Q ss_pred ccccccC-CCCccceeecccccceEEEEEEcCCCCEEEEEeCC-CeEEEEecc--CCce--eeEeecccccccEEEEEec
Q 008844 3 APIIDPL-QGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD-GSCVIWDFE--TRGI--AKELRDKECVAAITSVCWS 76 (551)
Q Consensus 3 l~lwd~~-~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d-g~I~iwd~~--~~~~--~~~~~~~~h~~~V~~l~~s 76 (551)
|.+|+.. ++.. ..+....+...+.+++|+|+|++|++++.+ +.|.+|++. ++.. +..+..+ ..+.+++|+
T Consensus 17 v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s 92 (343)
T 1ri6_A 17 IHVWNLNHEGAL-TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---GSLTHISTD 92 (343)
T ss_dssp EEEEEECTTSCE-EEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEEC
T ss_pred EEEEEECCCCcE-EEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC---CCCcEEEEc
Confidence 6788875 3332 334444567789999999999999988876 999999997 5553 3344332 378999999
Q ss_pred CCCCEEEEEeC-CCCEEEEEc---CCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC-Cceeeec--
Q 008844 77 KYGHRILVSAA-DKSLTLWDV---LKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST-GSTSILP-- 149 (551)
Q Consensus 77 ~~g~~l~s~s~-dg~i~vwd~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~-- 149 (551)
|++++|++++. ++.|.+||+ ..+..+..+.....+..+.|+|++. .++++...++.+.+|++.+ +......
T Consensus 93 ~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 93 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR--TLWVPALKQDRICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCC--EEEEecCCCCEEEEEEecCCCceeeeccc
Confidence 99998877765 888999999 4445556666666788899999864 2444444889999999987 5443221
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCC--CcE--EEeee---cc--Cccce
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKS--NQI--RALVP---VS--GAAVI 219 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~--~~~--~~~~~---~~--~~~~i 219 (551)
..... ....+..++|+|+|+++++++ .++.|.+|++.. +.. ...+. .. ....+
T Consensus 171 ~~~~~-----------------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T 1ri6_A 171 EVTTV-----------------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA 233 (343)
T ss_dssp EEECS-----------------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred ccccC-----------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCc
Confidence 10000 011677899999999776655 789999999953 433 22221 11 12457
Q ss_pred EEEEEeeCCCEEEEe-eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeee
Q 008844 220 KNIVFSRNGQYLLTN-SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAP 298 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 298 (551)
..++|+|+|++|+++ ..++.|++|++.... . ....+..+..... +. .+
T Consensus 234 ~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~-~------------------------~~~~~~~~~~~~~-~~-----~~ 282 (343)
T 1ri6_A 234 ADIHITPDGRHLYACDRTASLITVFSVSEDG-S------------------------VLSKEGFQPTETQ-PR-----GF 282 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTS-C------------------------CEEEEEEEECSSS-CC-----CE
T ss_pred cceEECCCCCEEEEEecCCCEEEEEEEcCCC-C------------------------ceEEeeeecCCCc-cc-----eE
Confidence 789999999988754 479999999922100 0 0111222222222 33 78
Q ss_pred EEcCCCCEEEEeeccCCcceEEEEecC---Cc--eeEEEecCCCceEEEEEecCCC
Q 008844 299 CFSGDGEWVIAGSASKGEHKIYIWDRA---GY--LVKILEGPKEALIDLAWHPVHP 349 (551)
Q Consensus 299 ~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~--~~~~l~~h~~~v~~l~~sp~~~ 349 (551)
+|+|+|++|++++.. ++.|.+|++. +. .+..+.. .....+++|.|+.+
T Consensus 283 ~~s~dg~~l~~~~~~--~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 283 NVDHSGKYLIAAGQK--SHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EECTTSSEEEEECTT--TCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EECCCCCEEEEecCC--CCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 999999999888742 6899999655 43 3334443 24567788877643
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=9e-24 Score=228.42 Aligned_cols=315 Identities=11% Similarity=0.037 Sum_probs=208.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccc---cEEEEEecCCCCEEEEEeCC---------CCEE
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVA---AITSVCWSKYGHRILVSAAD---------KSLT 92 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~---~V~~l~~s~~g~~l~s~s~d---------g~i~ 92 (551)
.+.+++|+|||+++++ +.||+|++||+.+++....+..+ .. .|.+++|||||++|++++.+ +.|.
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK--KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT--TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccc--cccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 4678899999998877 68999999999999887777654 33 49999999999999999764 7788
Q ss_pred EEEcCCCeEEEEEEcCC----CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCC--CCCCCCCCCC
Q 008844 93 LWDVLKGEKITRIVLQQ----TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVA--NGIAPSSRNK 166 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 166 (551)
+||+.+++. ..+.... .+..+.|+|++. .++.++. +.+++|++.++....+........ .+......
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~---~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~-- 167 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ---QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY-- 167 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT---CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH--
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCC---EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE--
Confidence 999998876 3332221 266789999875 3444443 789999999887654432111000 00000000
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEecCc----------------------------------eEEEEECCCCcEEEeee
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNSKG----------------------------------EILVIDHKSNQIRALVP 212 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~dg----------------------------------~i~i~d~~~~~~~~~~~ 212 (551)
.......+.+++|+|+|++|++++.++ .|++||+.+++....+.
T Consensus 168 --~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 168 --EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp --HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred --EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 000001347899999999999887543 89999999988644443
Q ss_pred cc-----CccceEEEEEeeCCCEEEEeeC----CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee
Q 008844 213 VS-----GAAVIKNIVFSRNGQYLLTNSN----DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF 283 (551)
Q Consensus 213 ~~-----~~~~i~~l~~s~~g~~l~t~s~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (551)
.. +...+..++|+|||++|++.+. +..|++||+. ++.+...+
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~-----------------------------~g~~~~~~ 296 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT-----------------------------TGVCTKKH 296 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT-----------------------------TCCEEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC-----------------------------CCcceEEE
Confidence 11 2577899999999998876643 3578999821 12223322
Q ss_pred ccc-ccccceeeeeeeEEcCCCCEEEEe-eccCCcc------eEEEEe-cCCce---eEEEecCCCceEE-EEEecCCCe
Q 008844 284 REF-QDSITKMHWKAPCFSGDGEWVIAG-SASKGEH------KIYIWD-RAGYL---VKILEGPKEALID-LAWHPVHPI 350 (551)
Q Consensus 284 ~~~-~~~v~~~~~~~~~~s~dg~~l~~g-s~~~~dg------~I~iwd-~~~~~---~~~l~~h~~~v~~-l~~sp~~~~ 350 (551)
..+ ...+... ...++|||||++|+.. +.. ++ .|++|+ ..+.. ...+..+...+.. ++|+|+++.
T Consensus 297 ~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~--~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~ 373 (723)
T 1xfd_A 297 EDESEAWLHRQ-NEEPVFSKDGRKFFFIRAIP--QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK 373 (723)
T ss_dssp EEECSSCCCCC-CCCCEECTTSCSEEEEEEEC--CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTE
T ss_pred EeccCCEEecc-CCCceEcCCCCeEEEEEecc--cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCE
Confidence 221 1221100 0267999999988865 332 44 688888 44333 5555544444554 699999999
Q ss_pred EEEEcCC---CcEEEEecCCCC--------------c---ceeecCCcceece
Q 008844 351 IVSVSLT---GWVYIWAKDYTE--------------N---WSAFAPDFKELEE 383 (551)
Q Consensus 351 l~s~s~d---g~i~iW~~~~~~--------------~---~~~~spd~~~l~~ 383 (551)
|+..+.+ +.++||++.... . ..+|+|||+.+..
T Consensus 374 l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 374 IYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp EEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred EEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 8776654 789999975321 0 1378999987764
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2.5e-22 Score=216.45 Aligned_cols=308 Identities=9% Similarity=0.048 Sum_probs=206.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee-eEeeccccc---------------ccEEEEEecCCCCEEEEEeCCC
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIA-KELRDKECV---------------AAITSVCWSKYGHRILVSAADK 89 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~-~~~~~~~h~---------------~~V~~l~~s~~g~~l~s~s~dg 89 (551)
+..+.|. |..+++++.++ | +||+.+++.+ ..+..+... ..|.+++|+|+ .+|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4456777 66777777777 8 9999999873 444333111 46999999999 6666654 59
Q ss_pred CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC-----CceeeeccccCC-CCCCCCCCC
Q 008844 90 SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST-----GSTSILPIAVPD-VANGIAPSS 163 (551)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~-~~~~~~~~~ 163 (551)
.|.+||+.+++..........+..+.|+|++. .++. ..++.|++|++.+ +....+...... ...+..
T Consensus 102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~---~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~--- 174 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGD---RVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA--- 174 (706)
T ss_dssp EEEEEETTTTEEEEEECCTTCCTTCEECTTSS---EEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC---
T ss_pred EEEEEECCCCceEEccCCcccccCCcCCCCCC---EEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc---
Confidence 99999999988766655556677889999875 3444 4679999999998 665433211110 000000
Q ss_pred CCCCCCCCCCCCceEEEEeeCCCEEEEEe---------------------------------cCceEEEEECCCCcEEEe
Q 008844 164 RNKYSDGTPPFTPTAACFNKYGDLVYVGN---------------------------------SKGEILVIDHKSNQIRAL 210 (551)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~s~~g~~l~~g~---------------------------------~dg~i~i~d~~~~~~~~~ 210 (551)
........+.+++|+|+|++|++++ .++.|++||+.+++....
T Consensus 175 ----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~ 250 (706)
T 2z3z_A 175 ----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL 250 (706)
T ss_dssp ----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC
T ss_pred ----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee
Confidence 0000112468899999999999987 457899999999887554
Q ss_pred eec-cCccceEEEEEeeCCCEEEEeeCCC-----eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec
Q 008844 211 VPV-SGAAVIKNIVFSRNGQYLLTNSNDR-----TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR 284 (551)
Q Consensus 211 ~~~-~~~~~i~~l~~s~~g~~l~t~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (551)
... .+...+.+++|+|+|++|++++.++ .|++||+.. +.....+.
T Consensus 251 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-----------------------------g~~~~~~~ 301 (706)
T 2z3z_A 251 QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-----------------------------GRFVRTLF 301 (706)
T ss_dssp CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-----------------------------CCEEEEEE
T ss_pred ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-----------------------------CceeeEEE
Confidence 422 4567899999999999999987776 899999221 11111111
Q ss_pred -c-cccccceeeeeeeEEcC--CCCEEEEeeccCCcceEEEEecC--CceeEEEecCCCceEE-EEEecCCCeEEEEcC-
Q 008844 285 -E-FQDSITKMHWKAPCFSG--DGEWVIAGSASKGEHKIYIWDRA--GYLVKILEGPKEALID-LAWHPVHPIIVSVSL- 356 (551)
Q Consensus 285 -~-~~~~v~~~~~~~~~~s~--dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~l~~h~~~v~~-l~~sp~~~~l~s~s~- 356 (551)
. ....+. ....++|+| +|++|+++.. ++.++||.+. +..+..+..|...+.. ++|+|+++.|+.++.
T Consensus 302 ~~~~~~~~~--~~~~~~~sp~~dg~~l~~~~~---~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 302 VETDKHYVE--PLHPLTFLPGSNNQFIWQSRR---DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEECSSCCC--CCSCCEECTTCSSEEEEEECT---TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EccCCCeEC--ccCCceeecCCCCEEEEEEcc---CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 1 111110 012679999 9999998887 7778888775 7778888888888877 899999997766554
Q ss_pred CC----cEEEEecCCCCc----------ceeecCCcceecee
Q 008844 357 TG----WVYIWAKDYTEN----------WSAFAPDFKELEEN 384 (551)
Q Consensus 357 dg----~i~iW~~~~~~~----------~~~~spd~~~l~~~ 384 (551)
++ .|+.|++.+++. -.+|+|||+.+...
T Consensus 377 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp SCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEE
T ss_pred CCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEE
Confidence 44 677777765431 12799999877643
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=3.2e-22 Score=194.93 Aligned_cols=266 Identities=14% Similarity=0.067 Sum_probs=196.2
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeEeecccccc-cEEEEEecCCCCEEEE-EeCCCCEEEEEcCCCeEEEEEEcCC----
Q 008844 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKECVA-AITSVCWSKYGHRILV-SAADKSLTLWDVLKGEKITRIVLQQ---- 109 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~-~V~~l~~s~~g~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~---- 109 (551)
++|++++.++.|.+||+.+++.+..+... +.. .+.+++|+|++++|++ ++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcC-CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 47899999999999999999988887643 122 5889999999987654 4557899999999999888887654
Q ss_pred --CeeEEEEecCCCCCcEEEEee------------CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 110 --TPLQARLHPGSSTPSLCLACP------------LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 110 --~~~~~~~~p~~~~~~~~~~~~------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.+..+.|+|++. .++++. .++.+.+||+.+++....... ...
T Consensus 81 ~~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------------------~~~ 136 (337)
T 1pby_B 81 VKSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---------------------PRQ 136 (337)
T ss_dssp EECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---------------------CSS
T ss_pred cccccceEECCCCC---EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC---------------------CCC
Confidence 567889999864 444443 579999999988765432111 015
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccC-ccceEEEEEeeCCCEEEEeeCC-C---------------
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG-AAVIKNIVFSRNGQYLLTNSND-R--------------- 238 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~t~s~D-g--------------- 238 (551)
+.+++|+|+|++|+++ ++.|.+||+.+++....+.... ..+ +.|+|++++|++.+.. +
T Consensus 137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 211 (337)
T 1pby_B 137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211 (337)
T ss_dssp CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeecccccccc
Confidence 6788999999988888 6899999999998877765332 122 3789999877665543 3
Q ss_pred --------eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceee-eeecccccccceeeeeeeEEcCCCCEEEE
Q 008844 239 --------TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCL-ALFREFQDSITKMHWKAPCFSGDGEWVIA 309 (551)
Q Consensus 239 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~s~dg~~l~~ 309 (551)
.|.+||+. +.... ..+..+...+. .++|+|+|++|++
T Consensus 212 ~~~~~~~~~v~~~d~~-----------------------------~~~~~~~~~~~~~~~~~-----~~~~s~dg~~l~~ 257 (337)
T 1pby_B 212 ADPTAYRTGLLTMDLE-----------------------------TGEMAMREVRIMDVFYF-----STAVNPAKTRAFG 257 (337)
T ss_dssp TSGGGEEEEEEEEETT-----------------------------TCCEEEEEEEECSSCEE-----EEEECTTSSEEEE
T ss_pred ccccccccceEEEeCC-----------------------------CCCceEeecCCCCCcee-----eEEECCCCCEEEE
Confidence 24555511 11111 11122222222 7899999999998
Q ss_pred eeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 310 GSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 310 gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
+ ++.|++||+. ++.+..+..+ ..+.+++|+|++++|++++.++.|++|++.+++..
T Consensus 258 ~-----~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 258 A-----YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp E-----ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred e-----CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 8 2689999999 8888777643 56789999999999999988999999999877643
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=1.3e-21 Score=191.87 Aligned_cols=277 Identities=12% Similarity=0.148 Sum_probs=178.7
Q ss_pred cccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC---CCeEEEEeccCCce--eeEeecccccccEEEEEecCC
Q 008844 4 PIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS---DGSCVIWDFETRGI--AKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 4 ~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~---dg~I~iwd~~~~~~--~~~~~~~~h~~~V~~l~~s~~ 78 (551)
..||+.++.+.. +....+...+..++|+|+|+ |++++. ++.|++|++.++.. +..+.. +...+..++|+|+
T Consensus 21 ~~~d~~tg~~~~-~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~--~~~~p~~~a~spd 96 (347)
T 3hfq_A 21 GTLDTTAKTLTN-DGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA--PGTPPAYVAVDEA 96 (347)
T ss_dssp EEEETTTTEEEE-EEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE--ESCCCSEEEEETT
T ss_pred EEEcCCCCeEEE-eeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec--CCCCCEEEEECCC
Confidence 345565665432 22333556778899999999 555443 68999999987653 333332 3678899999999
Q ss_pred CCEEEEEe-CCCCEEEEEcCC-CeEE--EEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCC
Q 008844 79 GHRILVSA-ADKSLTLWDVLK-GEKI--TRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPD 154 (551)
Q Consensus 79 g~~l~s~s-~dg~i~vwd~~~-~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 154 (551)
|++|++++ .++.|.+|++.. +... ..+..... .|.
T Consensus 97 g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~------~p~----------------------------------- 135 (347)
T 3hfq_A 97 RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH------GPR----------------------------------- 135 (347)
T ss_dssp TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC------CSS-----------------------------------
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC------CCC-----------------------------------
Confidence 99999888 678999999953 3321 11111000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECC-CCcEEE--eeeccCccceEEEEEeeCCCEE
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK-SNQIRA--LVPVSGAAVIKNIVFSRNGQYL 231 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~-~~~~~~--~~~~~~~~~i~~l~~s~~g~~l 231 (551)
.......+.+++|+|+|+++++...++.|.+|++. +++... .+.......+..++|+|+|++|
T Consensus 136 --------------~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 136 --------------PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp --------------TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred --------------ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 00011167889999999966666678899999998 555432 2222334467889999999976
Q ss_pred EE-eeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccc-cceeeeeeeEEcCCCCEEEE
Q 008844 232 LT-NSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDS-ITKMHWKAPCFSGDGEWVIA 309 (551)
Q Consensus 232 ~t-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~s~dg~~l~~ 309 (551)
++ +..++.|++|++... .+. ...+..+...... ........++|+|+|++|++
T Consensus 202 ~v~~~~~~~v~v~~~~~~-~g~------------------------~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQ-TGA------------------------FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp EEEETTTTEEEEEEEETT-TTE------------------------EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred EEEeCCCCEEEEEEecCC-CCc------------------------eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence 65 456899999982210 000 0001111111110 00011237899999998855
Q ss_pred eeccCCcceEEEEecC--C--ceeEEEecCCCceEEEEEecCCCeEEEEcC-CCcEEEEecC
Q 008844 310 GSASKGEHKIYIWDRA--G--YLVKILEGPKEALIDLAWHPVHPIIVSVSL-TGWVYIWAKD 366 (551)
Q Consensus 310 gs~~~~dg~I~iwd~~--~--~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~ 366 (551)
+... ++.|.+|++. + ..+..+..+...+..++|+|++++|++++. ++.|.+|+++
T Consensus 257 ~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 257 SNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 4431 7899999997 4 445566666677899999999998888876 5899999664
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=4.2e-22 Score=215.35 Aligned_cols=313 Identities=9% Similarity=0.051 Sum_probs=203.5
Q ss_pred CccccccCCCCccceeecccccc---eEEEEEEcCCCCEEEEEeCC---------CeEEEEeccCCceeeEeec-ccccc
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHG---VMKCIAFNRRGTLLAAGCSD---------GSCVIWDFETRGIAKELRD-KECVA 68 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~---~V~~l~fs~dg~~latg~~d---------g~I~iwd~~~~~~~~~~~~-~~h~~ 68 (551)
+|.+||+.+++....+.. |.. .|.+++|||||++||+++.+ +.|++||+.+++. ..+.. ..|..
T Consensus 38 ~i~~~d~~~g~~~~~~~~--~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~ 114 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEG--KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNA 114 (723)
T ss_dssp CEEEBCGGGCCCEEEECT--TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSC
T ss_pred CEEEEECCCCcEEEEecc--ccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccc
Confidence 478999999876655543 332 48999999999999999764 7889999998876 33332 23355
Q ss_pred cEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-Ce------------------eEEEEecCCCCCcEEEEe
Q 008844 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-TP------------------LQARLHPGSSTPSLCLAC 129 (551)
Q Consensus 69 ~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~------------------~~~~~~p~~~~~~~~~~~ 129 (551)
.+.+++|||||++|++++. +.|.+||+.+++.......+. .+ ..+.|+|++. .++++
T Consensus 115 ~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~---~la~~ 190 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAYA 190 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEEE
T ss_pred cccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC---EEEEE
Confidence 6899999999999999885 799999999887766554432 22 5799999875 34444
Q ss_pred eCC-C---------------------------------CcEEEEcCCCce-eeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 130 PLS-S---------------------------------APMIVDLSTGST-SILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 130 ~~~-~---------------------------------~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
+.+ + .+.+||+.++.. ..+... .....+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~---------------~~~~~~~~ 255 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP---------------DDPRMREY 255 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC---------------CCGGGSSE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC---------------ccCCCccc
Confidence 332 2 455666655542 111000 00000123
Q ss_pred CceEEEEeeCCCEEEEEec----CceEEEEECCCCcEEEeeeccCccce----EEEEEeeCCCEEEE--eeCCC----e-
Q 008844 175 TPTAACFNKYGDLVYVGNS----KGEILVIDHKSNQIRALVPVSGAAVI----KNIVFSRNGQYLLT--NSNDR----T- 239 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~i----~~l~~s~~g~~l~t--~s~Dg----~- 239 (551)
.+..++|+|+|++|++... +..|.+||+.+++....+...+...+ ..++|+|+|+.|+. +..++ .
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 6889999999998877653 36899999999988766543344443 37899999997775 44577 4
Q ss_pred -EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccce--eeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCc
Q 008844 240 -IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSK--CLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGE 316 (551)
Q Consensus 240 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~d 316 (551)
|.+||+... .. +...+......+. ..++|||||++|+..+...+.
T Consensus 336 ~l~~~d~~~~----------------------------~~~~~~~~l~~~~~~~~----~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 336 HITVSSSQPN----------------------------SSNDNIQSITSGDWDVT----KILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp EEEEECSSCC----------------------------SSSCCCCBSCCSSSCEE----EEEEEETTTTEEEEEESSSCT
T ss_pred EEEEEeccCC----------------------------CCccceeEeecCCeEEE----eeeEEcCCCCEEEEEEcCCCC
Confidence 555551110 11 0222221111121 136899999999877662111
Q ss_pred ceEEEEecC--Cc-eeEEEec---CCCceEEEEEecCCCeEEEEcC-CC--cEEEEecCCC
Q 008844 317 HKIYIWDRA--GY-LVKILEG---PKEALIDLAWHPVHPIIVSVSL-TG--WVYIWAKDYT 368 (551)
Q Consensus 317 g~I~iwd~~--~~-~~~~l~~---h~~~v~~l~~sp~~~~l~s~s~-dg--~i~iW~~~~~ 368 (551)
+.++||++. +. ....+.. |...+..++|+|++++|+.... .+ ...+++...+
T Consensus 384 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~ 444 (723)
T 1xfd_A 384 RRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (723)
T ss_dssp TCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred cceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCC
Confidence 788999987 32 3444544 5677899999999998876544 22 2344554333
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=3.6e-22 Score=190.40 Aligned_cols=250 Identities=12% Similarity=0.046 Sum_probs=179.7
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC-CceeeEeecccccccEEEEEecCCCC
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET-RGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~-~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
.|.+||+.+++.... ..|...|.+++|+|+|++|++++ ++.|++||+.+ ++....+..+ +...|.+++|+|+++
T Consensus 23 ~i~~~d~~~~~~~~~---~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~ 97 (297)
T 2ojh_A 23 SIEIFNIRTRKMRVV---WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-ATICNNDHGISPDGA 97 (297)
T ss_dssp EEEEEETTTTEEEEE---EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-CCCBCSCCEECTTSS
T ss_pred eEEEEeCCCCceeee---ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-ccccccceEECCCCC
Confidence 478899988765432 23678899999999999999987 78999999998 7766555443 347889999999999
Q ss_pred EEEEEeC--CCCEEEEEc--CCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC--CCceeeeccccCC
Q 008844 81 RILVSAA--DKSLTLWDV--LKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLS--TGSTSILPIAVPD 154 (551)
Q Consensus 81 ~l~s~s~--dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~--~~~~~~~~~~~~~ 154 (551)
+|++++. ++.+.||.+ .++. ...+.....+..+.|+|++. .+++++..++.+.+|++. ++....+.
T Consensus 98 ~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~l~~~~~~~~~~~~~~----- 169 (297)
T 2ojh_A 98 LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGK--SFTYCGIRDQVFDIYSMDIDSGVETRLT----- 169 (297)
T ss_dssp EEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSS--EEEEEEEETTEEEEEEEETTTCCEEECC-----
T ss_pred EEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCC--EEEEEECCCCceEEEEEECCCCcceEcc-----
Confidence 9999983 455556554 4444 44555555678889999864 345577788888888864 33332111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECC-CCcEEEeeeccCccceEEEEEeeCCCEEE
Q 008844 155 VANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHK-SNQIRALVPVSGAAVIKNIVFSRNGQYLL 232 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 232 (551)
.+...+.+++|+|+|++|++++ .++.+.||++. .+.....+. .+...+.+++|+|+|++|+
T Consensus 170 ----------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~ 232 (297)
T 2ojh_A 170 ----------------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVV 232 (297)
T ss_dssp ----------------CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEE
T ss_pred ----------------cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEE
Confidence 1122789999999999888766 48888999875 344444443 5677899999999999999
Q ss_pred EeeCC-----------CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEc
Q 008844 233 TNSND-----------RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 233 t~s~D-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
+++.+ +.|++||+... ....+..+..+...+. .++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~---------------------------~~~~~~~~~~~~~~~~-----~~~~s 280 (297)
T 2ojh_A 233 FVSYDADVFDHPRDLDVRVQLMDMDGG---------------------------NVETLFDLFGGQGTMN-----SPNWS 280 (297)
T ss_dssp EEEEETTCCSCCSSEEEEEEEEETTSC---------------------------SCEEEEEEEESTTTSC-----SCCBC
T ss_pred EEEcCCCCCcccccCceEEEEEecCCC---------------------------CceeeeccCCCCcccc-----cceEC
Confidence 88776 56999982211 0122333345556666 78999
Q ss_pred CCCCEEEEeecc
Q 008844 302 GDGEWVIAGSAS 313 (551)
Q Consensus 302 ~dg~~l~~gs~~ 313 (551)
|+|++|++++.+
T Consensus 281 pdg~~l~~~~~~ 292 (297)
T 2ojh_A 281 PDGDEFAYVRYF 292 (297)
T ss_dssp TTSSEEEEEEEC
T ss_pred CCCCEEEEEEec
Confidence 999999988873
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=1.4e-21 Score=190.40 Aligned_cols=266 Identities=12% Similarity=0.016 Sum_probs=191.7
Q ss_pred CccccccCCCCccceeecccccc---eEEEEEEcCCCCEEE-EEeCCCeEEEEeccCCceeeEeeccc---ccccEEEEE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHG---VMKCIAFNRRGTLLA-AGCSDGSCVIWDFETRGIAKELRDKE---CVAAITSVC 74 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~---~V~~l~fs~dg~~la-tg~~dg~I~iwd~~~~~~~~~~~~~~---h~~~V~~l~ 74 (551)
.|.+||+.+++....+.. .. .+.+++|+|+|++|+ ++..++.|.+||+.+++.+..+.... |...+.+++
T Consensus 12 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp EEEEEETTTTEEEEEEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred eEEEEECCCCcEEEEEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence 478899988866555432 23 578999999998664 55567899999999999887776431 123677899
Q ss_pred ecCCCCEEEEEe------------CCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC
Q 008844 75 WSKYGHRILVSA------------ADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST 142 (551)
Q Consensus 75 ~s~~g~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~ 142 (551)
|+|+|++|++++ .++.|.+||+.+++.+..+.....+..+.|+|++.. ++++ ++.+.+||+.+
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~---l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK---LYGL--GRDLHVMDPEA 163 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSC---EEEE--SSSEEEEETTT
T ss_pred ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCE---EEEe--CCeEEEEECCC
Confidence 999999999886 579999999999999888887777888999998752 3333 68999999998
Q ss_pred CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-c-----------------------eEE
Q 008844 143 GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-G-----------------------EIL 198 (551)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-g-----------------------~i~ 198 (551)
+.......... ....+.|+|+|..+++++.. + .|.
T Consensus 164 ~~~~~~~~~~~---------------------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 164 GTLVEDKPIQS---------------------WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp TEEEEEECSTT---------------------TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred CcEeeeeeccc---------------------cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 87543211100 00012456777655443322 1 579
Q ss_pred EEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccce
Q 008844 199 VIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSK 278 (551)
Q Consensus 199 i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (551)
+||+.+++........+...+.+++|+|+|++|+++ ++.|++||+. +.+
T Consensus 223 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~-----------------------------~~~ 271 (337)
T 1pby_B 223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE-----------------------------KNA 271 (337)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT-----------------------------TTE
T ss_pred EEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC-----------------------------CCc
Confidence 999999987522222455678899999999999888 7999999921 122
Q ss_pred eeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC
Q 008844 279 CLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK 336 (551)
Q Consensus 279 ~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~ 336 (551)
.+..+... ..+. +++|+|+|++|++++. ++.|++||+. ++.+..+..+.
T Consensus 272 ~~~~~~~~-~~~~-----~~~~s~dg~~l~~~~~---~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 272 SIKRVPLP-HSYY-----SVNVSTDGSTVWLGGA---LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEEEECS-SCCC-----EEEECTTSCEEEEESB---SSEEEEEETTTCCEEEEEECGG
T ss_pred CcceecCC-Ccee-----eEEECCCCCEEEEEcC---CCcEEEEECcCCcEEEEEEcCC
Confidence 22222211 2233 7899999999999877 8999999999 88888887653
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=7.6e-21 Score=186.16 Aligned_cols=271 Identities=10% Similarity=0.031 Sum_probs=192.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE-eCCCCEEEEEcCCCeEEEEEE
Q 008844 28 CIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS-AADKSLTLWDVLKGEKITRIV 106 (551)
Q Consensus 28 ~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~ 106 (551)
.+++++++.++++++.++.|++||+.+++.+..+..+ ....+..++|+|++++++++ ..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC-CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 4578889999999999999999999999988887654 12257899999999876544 568999999999999888887
Q ss_pred cCCC-------eeEEEEecCCCCCcEEEEeeC------------CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCC
Q 008844 107 LQQT-------PLQARLHPGSSTPSLCLACPL------------SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKY 167 (551)
Q Consensus 107 ~~~~-------~~~~~~~p~~~~~~~~~~~~~------------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (551)
.... +..+.|+|++. .++++.. .+.+.+||+.++.........
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------- 144 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--------------- 144 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE---------------
T ss_pred cccccccccccccceEECCCCC---EEEEEcccccccccccccCCCeEEEEECCCccccceeeec---------------
Confidence 6442 67889999865 4555543 489999999875432111000
Q ss_pred CCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCcc-----------------------ceEEEEE
Q 008844 168 SDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAA-----------------------VIKNIVF 224 (551)
Q Consensus 168 ~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-----------------------~i~~l~~ 224 (551)
.++..+.+++|+|+|+ +++++ +.|.+||+.+++.+..+...... ....+++
T Consensus 145 ---~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 145 ---PMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp ---ECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred ---cCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 0111578899999999 66654 34999999999887776432200 3345666
Q ss_pred eeCCC-----------EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee
Q 008844 225 SRNGQ-----------YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293 (551)
Q Consensus 225 s~~g~-----------~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 293 (551)
++++. ++......+.+++|+ . ..+...+
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~---~~~~~~~--- 257 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQE-----------------------------------F---ADLTELY--- 257 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEE-----------------------------------E---EECSSCE---
T ss_pred cCCCcCCccccccceeEEEEeccCCcEEecc-----------------------------------c---ccCCCcc---
Confidence 65442 122333445555555 1 1112222
Q ss_pred eeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 294 HWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 294 ~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
..++|+| +|++|+++ . +.|++||+. ++.+..+..+ ..+.+++|+|++++|++++.++.|++|++.+.+..
T Consensus 258 --~~~~~sp~dg~~l~~~-~----~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 258 --FTGLRSPKDPNQIYGV-L----NRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp --EEEEECSSCTTEEEEE-E----SEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred --eeeEecCCCCCEEEEE-c----CeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 2789999 99999988 3 689999999 8888777643 45789999999999988888999999999876644
Q ss_pred e
Q 008844 372 S 372 (551)
Q Consensus 372 ~ 372 (551)
.
T Consensus 330 ~ 330 (349)
T 1jmx_B 330 K 330 (349)
T ss_dssp E
T ss_pred e
Confidence 3
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=1.5e-21 Score=218.98 Aligned_cols=278 Identities=13% Similarity=0.081 Sum_probs=212.2
Q ss_pred ccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccC-CceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC
Q 008844 20 YLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFET-RGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 20 ~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~-~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 98 (551)
..|.+.+.++.|+++ .++++++.++.+.||.+.. +.....+..+ . .+..++|+|+|++|+++. ++.|.+|++..
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~--~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~ 274 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSF--T-DYYPRHLNTDGRRILFSK-GGSIYIFNPDT 274 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCC--C-SSCEEEEEESSSCEEEEE-TTEEEEECTTT
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCC--C-CcceeeEcCCCCEEEEEe-CCEEEEecCCc
Confidence 347789999999988 6777888889999998764 4445555544 2 466779999999998885 89999999954
Q ss_pred CeEEEEEEcCC------------CeeEEEEe-cCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCC
Q 008844 99 GEKITRIVLQQ------------TPLQARLH-PGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRN 165 (551)
Q Consensus 99 ~~~~~~~~~~~------------~~~~~~~~-p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (551)
.. +..+..+. .+..+.|+ |++. .+++++ ++.+.+|++..+....+.
T Consensus 275 ~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~---~la~~~-~~~i~~~~~~~~~~~~~~---------------- 333 (1045)
T 1k32_A 275 EK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD---LIAFVS-RGQAFIQDVSGTYVLKVP---------------- 333 (1045)
T ss_dssp CC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGG---CEEEEE-TTEEEEECTTSSBEEECS----------------
T ss_pred eE-eeeeccCcccccccccccccccceeeecCCCCC---EEEEEE-cCEEEEEcCCCCceEEcc----------------
Confidence 43 33443321 47789999 9875 233333 788999998877644321
Q ss_pred CCCCCCCCC-CceEEEEeeCCCEEEEEecCceEE-EEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 166 KYSDGTPPF-TPTAACFNKYGDLVYVGNSKGEIL-VIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 166 ~~~~~~~~~-~i~~~~~s~~g~~l~~g~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
.+.. .+..++|+ +|+.|++++.++.|. +|++.+++..... .|...+..++|+|+|++|++++.++.|++|
T Consensus 334 -----~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 334 -----EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp -----CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -----CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 1112 57889999 999999988888999 9999988765544 677889999999999999999999999999
Q ss_pred eCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC-------Cc
Q 008844 244 DNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK-------GE 316 (551)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~-------~d 316 (551)
|+. ++........|...+. .++|||||++|++++... .+
T Consensus 406 d~~-----------------------------tg~~~~~~~~~~~~v~-----~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 406 DLE-----------------------------TGKPTVIERSREAMIT-----DFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp ETT-----------------------------TCCEEEEEECSSSCCC-----CEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred ECC-----------------------------CCceEEeccCCCCCcc-----ceEECCCCCeEEEEecCccccccCCCC
Confidence 922 1333444445666666 889999999999887621 13
Q ss_pred ceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 317 HKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 317 g~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+.|++||+. ++ +..+..|...+..++|+|+|++|++++.++...+|+..
T Consensus 452 ~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 452 QAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 589999999 65 77788888889999999999999999988877777653
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=3.2e-21 Score=192.08 Aligned_cols=304 Identities=13% Similarity=0.099 Sum_probs=199.6
Q ss_pred cccCCCCccceeecccccceEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeccCCceeeEeecccccccEEEEEecC
Q 008844 6 IDPLQGDFPEVIEEYLEHGVMKC-----IAFNRRGTLLAAGCS-DG--SCVIWDFETRGIAKELRDKECVAAITSVCWSK 77 (551)
Q Consensus 6 wd~~~~~~~~~l~~~~h~~~V~~-----l~fs~dg~~latg~~-dg--~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~ 77 (551)
+|+.++.....+.. |...... .+|||||++||.++. +| .|.+||+.+++.......+ ...+..+.|+|
T Consensus 15 ~~~~~g~~~~~lt~--~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~--~~~~~~~~~sp 90 (388)
T 3pe7_A 15 QDASTGAQVTRLTP--PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR--GDNTFGGFLSP 90 (388)
T ss_dssp ECTTTCCEEEECSC--TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS--CBCSSSCEECT
T ss_pred ecCCCCcceEEecC--CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC--CCCccceEEcC
Confidence 46777766555544 4444555 789999999998887 66 4888899888876665443 55555778999
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCee-EE--EEecCCCCCcEEEE----------------------eeCC
Q 008844 78 YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPL-QA--RLHPGSSTPSLCLA----------------------CPLS 132 (551)
Q Consensus 78 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~--~~~p~~~~~~~~~~----------------------~~~~ 132 (551)
+|+.|+.++.++.|.+||+.+++....+..+.... .. .++|++. +++. ....
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT---KLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS---EEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC---eeccccccCcccccccccchhhhhhccCCc
Confidence 99999999999999999999998877776665432 22 2356543 3332 1234
Q ss_pred CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee-CCCEEEEEecC------ceEEEEECCCC
Q 008844 133 SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK-YGDLVYVGNSK------GEILVIDHKSN 205 (551)
Q Consensus 133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g~~d------g~i~i~d~~~~ 205 (551)
..|.+||+.++....+.... ..+..++|+| +|+.|+..... ..|.++|+.++
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~---------------------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN---------------------QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES---------------------SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred ceEEEEECCCCceEEeecCC---------------------ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 67889999988765443211 1578899999 99988877653 37889998877
Q ss_pred cEEEeeeccCccceEEEEEeeCCCEEEEeeC-CC----eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceee
Q 008844 206 QIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-DR----TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCL 280 (551)
Q Consensus 206 ~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (551)
.............+..++|+|+|+.|+..+. ++ .|++||+.... ...+
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---------------------------~~~l 279 (388)
T 3pe7_A 227 NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE---------------------------NRQL 279 (388)
T ss_dssp CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC---------------------------EEEE
T ss_pred ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc---------------------------eEEE
Confidence 6554442111145788999999998766543 22 39999932110 0111
Q ss_pred eeecccccccceeeeeeeEEcCCCCEEEEeecc------CCcceEEEEecCCceeEEEecCCC-----------ceEEEE
Q 008844 281 ALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS------KGEHKIYIWDRAGYLVKILEGPKE-----------ALIDLA 343 (551)
Q Consensus 281 ~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~------~~dg~I~iwd~~~~~~~~l~~h~~-----------~v~~l~ 343 (551)
..+..+.... .....++|+|||++|+....+ .++..|++||+.+..+..+..|.. .+..++
T Consensus 280 ~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 357 (388)
T 3pe7_A 280 TSMPACSHLM--SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPS 357 (388)
T ss_dssp EEECCEEEEE--ECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCE
T ss_pred EcCCCceeee--ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCcc
Confidence 1111110000 001145799999998865421 226789999999434455666665 578899
Q ss_pred EecCCCeEEEEcC-CCcEEEEecC
Q 008844 344 WHPVHPIIVSVSL-TGWVYIWAKD 366 (551)
Q Consensus 344 ~sp~~~~l~s~s~-dg~i~iW~~~ 366 (551)
|+|+++.|+.++. +|...||.++
T Consensus 358 ~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 358 FTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCCCEEEEEecCCCceeEEEEE
Confidence 9999998877664 7777777654
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=3.2e-20 Score=182.06 Aligned_cols=267 Identities=14% Similarity=0.197 Sum_probs=195.3
Q ss_pred cccEEEEEecCCCCEEEEEeC-------CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEE
Q 008844 67 VAAITSVCWSKYGHRILVSAA-------DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVD 139 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d 139 (551)
...+..++|+|++++|++++. ++.|.+||+.+++.+..+.....+..+.++|++. .++++...++.+.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQ--TLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTT--EEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCC--EEEEEecCCCEEEEEe
Confidence 466889999999999888874 4689999999999999998877788999999864 3666677789999999
Q ss_pred cCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe--cCceEEEEECCCCcEEEeeeccCcc
Q 008844 140 LSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN--SKGEILVIDHKSNQIRALVPVSGAA 217 (551)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~ 217 (551)
+.+++........... ......+..+.+++|+|+|+++++++ .++.|.+||+.+++.+..+. .+..
T Consensus 118 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~ 185 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRK-----------RTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGK 185 (353)
T ss_dssp TTTCCEEEEEESCCCC-----------CCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCT
T ss_pred CCCCeeEEEEecCCCc-----------cccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCC
Confidence 9988764332111000 00001112478899999999888776 47899999999999888774 2555
Q ss_pred ceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeee
Q 008844 218 VIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKA 297 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 297 (551)
.+.+++|+|+|++|++++.++.|.+||... ......+...... ....+..
T Consensus 186 ~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-----------------------------~~~~~~~~~~~~~-~~~~~~~ 235 (353)
T 3vgz_A 186 MSTGLALDSEGKRLYTTNADGELITIDTAD-----------------------------NKILSRKKLLDDG-KEHFFIN 235 (353)
T ss_dssp TCCCCEEETTTTEEEEECTTSEEEEEETTT-----------------------------TEEEEEEECCCSS-SCCCEEE
T ss_pred ccceEEECCCCCEEEEEcCCCeEEEEECCC-----------------------------CeEEEEEEcCCCC-CCcccce
Confidence 678899999999999999999999999221 2222222210000 0111227
Q ss_pred eEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEc-CCCcEEEEecCCCCcce---
Q 008844 298 PCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVS-LTGWVYIWAKDYTENWS--- 372 (551)
Q Consensus 298 ~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s-~dg~i~iW~~~~~~~~~--- 372 (551)
++|+|+|++|++++.. ++.|++||+. ++.+..+..+. ...++|+|++++|++++ .++.|.+|++.+++...
T Consensus 236 ~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 236 ISLDTARQRAFITDSK--AAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp EEEETTTTEEEEEESS--SSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEeCC--CCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 8999999988887752 5899999999 88888887544 36799999999655554 69999999998765322
Q ss_pred --------eecCCccee
Q 008844 373 --------AFAPDFKEL 381 (551)
Q Consensus 373 --------~~spd~~~l 381 (551)
+|+||++.+
T Consensus 312 ~~~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 312 TPTHPNSLALSADGKTL 328 (353)
T ss_dssp CCSEEEEEEECTTSCEE
T ss_pred cCCCCCeEEEcCCCCEE
Confidence 677777644
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=5.7e-19 Score=174.01 Aligned_cols=286 Identities=11% Similarity=0.074 Sum_probs=181.4
Q ss_pred CCCEEEEEeC----CCeEEEEecc--CCceeeEeecccccccEEEEEecCCCCEEEEEeCC----CCEEEEEcCC--CeE
Q 008844 34 RGTLLAAGCS----DGSCVIWDFE--TRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD----KSLTLWDVLK--GEK 101 (551)
Q Consensus 34 dg~~latg~~----dg~I~iwd~~--~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d----g~i~vwd~~~--~~~ 101 (551)
...++++|+. ++.|.+|.+. ++........ +...+..++|+|+|++|++++.+ +.|.+|++.. +..
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 3445666643 5689999774 4554333322 46788899999999999999885 7999999865 443
Q ss_pred --EEEEEc-CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccc-cCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 102 --ITRIVL-QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIA-VPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 102 --~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
+..... ...+..+.+ ++ ..++++...++.+.+|++........... ........ .........+.
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~-------~~~~~~~~~~~ 158 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NG--KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP-------DKERQTMPHLH 158 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CS--SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS-------CTTTCSSCCEE
T ss_pred EEeeEeccCCCCcEEEEE--CC--CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC-------CccccCCCcce
Confidence 233332 234555555 33 23455555788999999975433211110 00000000 00011122568
Q ss_pred EEEEeeCCCEEEEEe-cCceEEEEECCCCc-------EE-----EeeeccCccceEEEEEeeCCCEEEEee-CCCeEEEE
Q 008844 178 AACFNKYGDLVYVGN-SKGEILVIDHKSNQ-------IR-----ALVPVSGAAVIKNIVFSRNGQYLLTNS-NDRTIRIY 243 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~-------~~-----~~~~~~~~~~i~~l~~s~~g~~l~t~s-~Dg~i~iw 243 (551)
+++|+|+|++|++++ .++.|.+|++.... +. ..........+.+++|+|+|++|++++ .++.|.+|
T Consensus 159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence 899999999776655 47899999887543 21 222234566788999999999887776 68999999
Q ss_pred eCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec---ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 244 DNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR---EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
++.... ...+..+. .+.... ..++|+|||++|+++.... ++.|.
T Consensus 239 ~~~~g~---------------------------~~~~~~~~~~~~~~~~~-----~~i~~spdg~~l~v~~~~~-~~~i~ 285 (361)
T 3scy_A 239 RYADGM---------------------------LDEIQTVAADTVNAQGS-----GDIHLSPDGKYLYASNRLK-ADGVA 285 (361)
T ss_dssp EEETTE---------------------------EEEEEEEESCSSCCCCE-----EEEEECTTSSEEEEEECSS-SCEEE
T ss_pred EecCCc---------------------------eEEeEEEecCCCCCCCc-----ccEEECCCCCEEEEECCCC-CCEEE
Confidence 921100 00011111 111112 2789999999998887621 37899
Q ss_pred EEecC---Cc--eeEEEecCCCceEEEEEecCCCeEEEEc-CCCcEEEEecC
Q 008844 321 IWDRA---GY--LVKILEGPKEALIDLAWHPVHPIIVSVS-LTGWVYIWAKD 366 (551)
Q Consensus 321 iwd~~---~~--~~~~l~~h~~~v~~l~~sp~~~~l~s~s-~dg~i~iW~~~ 366 (551)
+|++. +. .+..+.. ...+..++|+|++++|++++ .++.|.+|.++
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 99985 44 3444444 45788999999999888887 57899997765
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=5.9e-20 Score=181.31 Aligned_cols=261 Identities=11% Similarity=0.106 Sum_probs=170.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEecc-CCceeeEeecccccccEEEEEecCCCCE--EEEEe-------------C
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFE-TRGIAKELRDKECVAAITSVCWSKYGHR--ILVSA-------------A 87 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~-~~~~~~~~~~~~h~~~V~~l~~s~~g~~--l~s~s-------------~ 87 (551)
..+..++|+|+|++|++++.+ .|.+|++. ++++........ .+.+.+++|+|+|++ +++++ .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-CCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 467889999999999998887 99999997 776654332111 123556899999994 44553 5
Q ss_pred CCCEEEEEcC-CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 88 DKSLTLWDVL-KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 88 dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
++++.+|++. +|+....+... +.
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~---------~~----------------------------------------------- 141 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNY---------EY----------------------------------------------- 141 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEE---------EC-----------------------------------------------
T ss_pred CceEEEEccCCCCcCcceEeeE---------Ee-----------------------------------------------
Confidence 7889999886 45543322110 00
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEec-CceEEEEECC-CCcEEE--eeecc-CccceEEEEEeeCCCEEEEeeC-CCeE
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNS-KGEILVIDHK-SNQIRA--LVPVS-GAAVIKNIVFSRNGQYLLTNSN-DRTI 240 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~-dg~i~i~d~~-~~~~~~--~~~~~-~~~~i~~l~~s~~g~~l~t~s~-Dg~i 240 (551)
.+...+.+++|+|+|++|+++.. ++.|.+|++. +++... .+... +...+..++|+|+|++|++++. ++.|
T Consensus 142 ----~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 217 (365)
T 1jof_A 142 ----QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp ----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred ----CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE
Confidence 00016788999999998887764 6799999998 776532 23212 3567899999999999887765 7899
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec----cccccc-ceeeeeeeE-EcCCCCEEEEeeccC
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR----EFQDSI-TKMHWKAPC-FSGDGEWVIAGSASK 314 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v-~~~~~~~~~-~s~dg~~l~~gs~~~ 314 (551)
.+|++. ...+.... . ...+..+. ++.... .......++ |+|||++|+++....
T Consensus 218 ~v~~~~-~~~g~~~~-----------------~---~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 218 CEYVID-PATHMPVY-----------------T---HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEEEC-TTTCCEEE-----------------E---EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEEEe-CCCCcEEE-----------------c---cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999821 10000000 0 00011111 111100 000123789 999999998776521
Q ss_pred Cc----ceEEEEecC--CceeE---EEecCCCceEEEEEec---CCCeEEEEcC-CCcEEEEecCCC
Q 008844 315 GE----HKIYIWDRA--GYLVK---ILEGPKEALIDLAWHP---VHPIIVSVSL-TGWVYIWAKDYT 368 (551)
Q Consensus 315 ~d----g~I~iwd~~--~~~~~---~l~~h~~~v~~l~~sp---~~~~l~s~s~-dg~i~iW~~~~~ 368 (551)
+ +.|.+|++. |++.. .+..+...+..++|+| ++++|++++. ++.|.||+++..
T Consensus 277 -~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 -KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 1 189999995 66543 2334555678899999 8999999987 589999998754
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.7e-19 Score=177.71 Aligned_cols=282 Identities=14% Similarity=0.155 Sum_probs=181.3
Q ss_pred ccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC----CeEEEEeccC--CceeeEeecccccccEEEEEecCCCC
Q 008844 7 DPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD----GSCVIWDFET--RGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 7 d~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d----g~I~iwd~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
|+.++++..... . +...+..++|+|+|++|++++.+ +.|.+|++.. +..........+...+..+++ +++
T Consensus 35 d~~~g~~~~~~~-~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~ 110 (361)
T 3scy_A 35 NEETGESLPLSD-A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK 110 (361)
T ss_dssp ETTTCCEEEEEE-E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS
T ss_pred eCCCCCEEEeec-c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC
Confidence 455665543332 2 56778889999999999999875 7999999875 433222222223556778888 788
Q ss_pred EEEEEe-CCCCEEEEEcCCCeEEE----EEEcC-----------CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 81 RILVSA-ADKSLTLWDVLKGEKIT----RIVLQ-----------QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 81 ~l~s~s-~dg~i~vwd~~~~~~~~----~~~~~-----------~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
+|++++ .++.|.+|++.....+. .+... ..+..+.|+|++. .++++...++.+.+|++....
T Consensus 111 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 111 NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK--YLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTC
T ss_pred EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC--EEEEEeCCCCEEEEEEEcCCC
Confidence 888777 47899999997543221 11111 1236789999874 255556668899999987654
Q ss_pred e------e-ee----ccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCCCcEE--Ee
Q 008844 145 T------S-IL----PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQIR--AL 210 (551)
Q Consensus 145 ~------~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~--~~ 210 (551)
. . .. ..... ....+..++|+|+|+++++++ .++.|.+|++.++... ..
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVA------------------PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECC------------------TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred CcccccceeecccccceecC------------------CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 2 1 10 00000 111577899999999888777 6899999999877652 22
Q ss_pred eec--cCccceEEEEEeeCCCEEEEeeCC--CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc
Q 008844 211 VPV--SGAAVIKNIVFSRNGQYLLTNSND--RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF 286 (551)
Q Consensus 211 ~~~--~~~~~i~~l~~s~~g~~l~t~s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (551)
+.. .+......++|+|+|++|+++..+ +.|.+|++. +..+ ....+..+..
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~-~~~g------------------------~~~~~~~~~~- 304 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD-ETNG------------------------TLTKVGYQLT- 304 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC-TTTC------------------------CEEEEEEEEC-
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc-CCCC------------------------cEEEeeEecC-
Confidence 211 223457899999999998776654 899999921 1000 0011222221
Q ss_pred ccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---CceeEEE-ecCCCceEEEEEe
Q 008844 287 QDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GYLVKIL-EGPKEALIDLAWH 345 (551)
Q Consensus 287 ~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~~~~~l-~~h~~~v~~l~~s 345 (551)
...+. .++|+|+|++|++++.. ++.|.+|.+. |++.... ..+...+.+|.|.
T Consensus 305 g~~~~-----~~~~spdg~~l~~~~~~--~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 305 GIHPR-----NFIITPNGKYLLVACRD--TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp SSCCC-----EEEECTTSCEEEEEETT--TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCc-----eEEECCCCCEEEEEECC--CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 22233 78999999999988852 6889997665 5544432 1244568888885
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=9.6e-21 Score=204.52 Aligned_cols=296 Identities=13% Similarity=0.050 Sum_probs=193.4
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccc---cEEEEEecCCCCEEEEEeC---------CCCEEEEE
Q 008844 28 CIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVA---AITSVCWSKYGHRILVSAA---------DKSLTLWD 95 (551)
Q Consensus 28 ~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~---~V~~l~~s~~g~~l~s~s~---------dg~i~vwd 95 (551)
+++|+|+|++++++ .|++|++||+.+++....+..+ .. .|.+++|||||++|++++. ++.|++||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNR--TMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHH--HHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccc--cccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 77999999766654 6999999999999887766543 33 4899999999999998876 68999999
Q ss_pred cCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC--
Q 008844 96 VLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP-- 173 (551)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (551)
+.+++.+........+..+.|+|++.. ++.+ .++.|++|++.++....+....... ....++.
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~~---la~~-~~~~i~~~~~~~g~~~~l~~~~~~~-----------~v~~g~~~~ 161 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGSK---LAYV-YQNNIYLKQRPGDPPFQITFNGREN-----------KIFNGIPDW 161 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTTC---EEEE-ETTEEEEESSTTSCCEECCCCCBTT-----------TEEESSCCH
T ss_pred CCCCccccceecCcccccceECCCCCE---EEEE-ECCeEEEEeCCCCCcEEEecCCCcC-----------CeEcccccc
Confidence 999876321223356778999999863 3333 4789999999888765432111000 0000000
Q ss_pred -------CCceEEEEeeCCCEEEEEecCc----------------------------------eEEEEECCCCcEE---E
Q 008844 174 -------FTPTAACFNKYGDLVYVGNSKG----------------------------------EILVIDHKSNQIR---A 209 (551)
Q Consensus 174 -------~~i~~~~~s~~g~~l~~g~~dg----------------------------------~i~i~d~~~~~~~---~ 209 (551)
....+++|+|+|++|++++.+. .|++||+.+++.. .
T Consensus 162 v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 162 VYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 1235899999999999987652 7899999988752 2
Q ss_pred eee----ccCccceEEEEEeeCCCEEEEeeC--CC--eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee
Q 008844 210 LVP----VSGAAVIKNIVFSRNGQYLLTNSN--DR--TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA 281 (551)
Q Consensus 210 ~~~----~~~~~~i~~l~~s~~g~~l~t~s~--Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (551)
... ..|...+..++|+||++++++... ++ .|.+||+..+ ..++.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~-------------------------~~~g~~~~ 296 (719)
T 1z68_A 242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRED-------------------------WQTWDCPK 296 (719)
T ss_dssp CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSS-------------------------SSSEECCG
T ss_pred ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCC-------------------------CCCCceEE
Confidence 110 146778999999999887776432 32 3666761000 00122222
Q ss_pred ee----cccccccceeeeeeeEEcCCCCEEEEe-eccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcC
Q 008844 282 LF----REFQDSITKMHWKAPCFSGDGEWVIAG-SASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 282 ~~----~~~~~~v~~~~~~~~~~s~dg~~l~~g-s~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~ 356 (551)
.+ ..+...+.......++|+|||+.|+.. +...+...|++|++.+.....+..+...+..+.++ ++..|+..+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 22 233333321001157899999977653 32222457888888733356666666678888877 7777666655
Q ss_pred C-----CcEEEEecCC
Q 008844 357 T-----GWVYIWAKDY 367 (551)
Q Consensus 357 d-----g~i~iW~~~~ 367 (551)
+ +.++||.+..
T Consensus 376 ~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 376 EFEEYPGRRNIYRISI 391 (719)
T ss_dssp CGGGCTTCBEEEEEEC
T ss_pred cCCCCCceEEEEEEeC
Confidence 4 7888998753
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.3e-19 Score=182.51 Aligned_cols=251 Identities=13% Similarity=0.036 Sum_probs=166.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce----------eeEe---ecccccccEEEEEecCCCCEEE----EEe
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI----------AKEL---RDKECVAAITSVCWSKYGHRIL----VSA 86 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~----------~~~~---~~~~h~~~V~~l~~s~~g~~l~----s~s 86 (551)
..++++++++++.+|++|+.++ |+||+...... +... ....|...|++++|+|+|++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4578999999999999999888 89987642110 1100 0012356799999999999999 788
Q ss_pred CCCCEEEEEcCCCe--------EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCC
Q 008844 87 ADKSLTLWDVLKGE--------KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 87 ~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
.|++|+|||+.++. .+..+.
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 143 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHK---------------------------------------------------- 143 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEE----------------------------------------------------
T ss_pred CCceEEEEEccccccCCcCCcceeeeee----------------------------------------------------
Confidence 89999999987541 100000
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeC-CCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNKY-GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
....|...|.+++|+|+ +.+|++++.||+|++||++++....... .|...|++++|+|+|++|++++.|
T Consensus 144 ---------~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~~~~v~~v~wspdg~~lasgs~d 213 (434)
T 2oit_A 144 ---------LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PSTVAVTSVCWSPKGKQLAVGKQN 213 (434)
T ss_dssp ---------CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CGGGCEEEEEECTTSSCEEEEETT
T ss_pred ---------ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CCCCceeEEEEcCCCCEEEEEcCC
Confidence 00112338999999998 7999999999999999999986654443 688899999999999999999999
Q ss_pred CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccc--ceeeeeeeEEcCCCCEEEEeeccCC
Q 008844 238 RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSI--TKMHWKAPCFSGDGEWVIAGSASKG 315 (551)
Q Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~s~dg~~l~~gs~~~~ 315 (551)
|+|++||+. . .....+..+...- ....+.+++|++++.++++.+...|
T Consensus 214 g~v~iwd~~-~-----------------------------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 214 GTVVQYLPT-L-----------------------------QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp SCEEEECTT-C-----------------------------CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred CcEEEEccC-C-----------------------------cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 999999932 0 1111111111100 0112338899999888866553210
Q ss_pred ----cceEEEEecC-C--c---eeEEEe-------cCCCceEEEEEecCCCeEEEEcC-CCcEEEEecCC
Q 008844 316 ----EHKIYIWDRA-G--Y---LVKILE-------GPKEALIDLAWHPVHPIIVSVSL-TGWVYIWAKDY 367 (551)
Q Consensus 316 ----dg~I~iwd~~-~--~---~~~~l~-------~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~~ 367 (551)
...+++|++. . + ....+. +...+...+.+.++..+|++++. .+.|.|.....
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 1248999987 2 1 112211 11223334445577776666554 66688877543
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=6.4e-19 Score=190.49 Aligned_cols=291 Identities=13% Similarity=0.091 Sum_probs=184.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeeccccc---ccEEEEEecCCCCEEEEEeCC---------CCEE
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECV---AAITSVCWSKYGHRILVSAAD---------KSLT 92 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~---~~V~~l~~s~~g~~l~s~s~d---------g~i~ 92 (551)
...+++|+|+|.+|+++ ||+|++||+.+++....+.++... .....++|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35688999999999986 899999999999987777665211 123458899999999998875 5667
Q ss_pred EEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCC--CCCCCCCCCCCCCC
Q 008844 93 LWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVA--NGIAPSSRNKYSDG 170 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 170 (551)
+||+.+++...............|+|++.. ++.+ .++.|++|++.++....+........ ++........
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~---la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e---- 167 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHK---LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE---- 167 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTC---EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH----
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCE---EEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc----
Confidence 999999886543333456889999999863 3333 57899999998887654432111000 0000000000
Q ss_pred CCCCCceEEEEeeCCCEEEEEecC------------------------------------ceEEEEECCC---C---cEE
Q 008844 171 TPPFTPTAACFNKYGDLVYVGNSK------------------------------------GEILVIDHKS---N---QIR 208 (551)
Q Consensus 171 ~~~~~i~~~~~s~~g~~l~~g~~d------------------------------------g~i~i~d~~~---~---~~~ 208 (551)
..-.....+.|||||++|+.++.| ..|++||+.+ + +..
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 000133568999999999887532 1588999998 7 333
Q ss_pred Eeeec----cCccceEEEEEeeCCCEEEEeeC----CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccce--
Q 008844 209 ALVPV----SGAAVIKNIVFSRNGQYLLTNSN----DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSK-- 278 (551)
Q Consensus 209 ~~~~~----~~~~~i~~l~~s~~g~~l~t~s~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 278 (551)
..... .+...+..++|+|||+.++.... +..|++||+.. +.
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-----------------------------g~~~ 298 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-----------------------------SSGR 298 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-----------------------------TTTE
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-----------------------------Cccc
Confidence 33210 26778999999999997665432 34689998221 11
Q ss_pred --eeee--e--cccccccceeeeeeeEEcCCCCEEE-EeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeE
Q 008844 279 --CLAL--F--REFQDSITKMHWKAPCFSGDGEWVI-AGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPII 351 (551)
Q Consensus 279 --~~~~--~--~~~~~~v~~~~~~~~~~s~dg~~l~-~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l 351 (551)
|... + ..+...+.......++|||||+.|+ ..+...|...|++|++.+.....+......|..+.+ +++..|
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i 377 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYL 377 (740)
T ss_dssp EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEE
T ss_pred cceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEE
Confidence 1111 1 2233333210112678999999887 776655567899999994444455544555665543 446654
Q ss_pred EEEc
Q 008844 352 VSVS 355 (551)
Q Consensus 352 ~s~s 355 (551)
+..+
T Consensus 378 ~f~~ 381 (740)
T 4a5s_A 378 YYIS 381 (740)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=8.8e-20 Score=196.97 Aligned_cols=311 Identities=8% Similarity=0.014 Sum_probs=198.3
Q ss_pred CccccccCCCCccceeecccccc---eEEEEEEcCCCCEEEEEeC---------CCeEEEEeccCCceeeEeeccccccc
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHG---VMKCIAFNRRGTLLAAGCS---------DGSCVIWDFETRGIAKELRDKECVAA 69 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~---~V~~l~fs~dg~~latg~~---------dg~I~iwd~~~~~~~~~~~~~~h~~~ 69 (551)
+|.+||..+++....+.. |.. .|.+++|||||++||+++. ++.|++||+.+++.+..... ...
T Consensus 37 ~i~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~ 111 (719)
T 1z68_A 37 NIVLYNIETGQSYTILSN--RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRP 111 (719)
T ss_dssp CEEEEESSSCCEEEEECH--HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSS
T ss_pred CEEEEEcCCCcEEEEEcc--ccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccc
Confidence 578999998876544432 222 3899999999999999876 68999999998876321111 246
Q ss_pred EEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC-C------------------eeEEEEecCCCCCcEEEEee
Q 008844 70 ITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQ-T------------------PLQARLHPGSSTPSLCLACP 130 (551)
Q Consensus 70 V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~------------------~~~~~~~p~~~~~~~~~~~~ 130 (551)
+.+++|||||++|+++. ++.|++|++.++.......... . ...+.|+|++. .++.++
T Consensus 112 ~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~---~la~~~ 187 (719)
T 1z68_A 112 IQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK---FLAYAE 187 (719)
T ss_dssp BCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS---EEEEEE
T ss_pred cccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCC---EEEEEE
Confidence 88999999999999986 7899999998887654322111 1 13789999975 455544
Q ss_pred CC-C---------------------------------CcEEEEcCCCcee-eeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 131 LS-S---------------------------------APMIVDLSTGSTS-ILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 131 ~~-~---------------------------------~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.+ + .+.+||+.++... ...+... .....+...
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~-------------~~~~~~~~~ 254 (719)
T 1z68_A 188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP-------------AMIASSDYY 254 (719)
T ss_dssp EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC-------------HHHHTSCEE
T ss_pred ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC-------------ccCCCCcce
Confidence 33 2 5667777766531 0000000 000112336
Q ss_pred ceEEEEeeCCCEEEEEecC----ceEEEEE----CCCCcEEEeee---ccCccceE-----EEEEeeCCCEEEE--eeCC
Q 008844 176 PTAACFNKYGDLVYVGNSK----GEILVID----HKSNQIRALVP---VSGAAVIK-----NIVFSRNGQYLLT--NSND 237 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~i~-----~l~~s~~g~~l~t--~s~D 237 (551)
+..++|+|+++++++.... ..|.+|| +.+++....+. ..|...+. .++|+|+|+.|+. +..+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 8899999998877764432 3589999 88877654442 25555565 7899999996554 4456
Q ss_pred Ce--EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeecc--
Q 008844 238 RT--IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS-- 313 (551)
Q Consensus 238 g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~-- 313 (551)
|. |.+|++. +.. ...+..+...+. .+.++ +++.|+..+..
T Consensus 335 g~~~l~~~~~~-----------------------------~~~-~~~lt~~~~~v~-----~~~~~-d~~~i~~~~~~~~ 378 (719)
T 1z68_A 335 GYKHIHYIKDT-----------------------------VEN-AIQITSGKWEAI-----NIFRV-TQDSLFYSSNEFE 378 (719)
T ss_dssp SCEEEEEESSC-----------------------------STT-CEECSCSSSCEE-----EEEEE-CSSEEEEEESCGG
T ss_pred CceEEEEEECC-----------------------------CCc-eEecccCceEEE-----EEEEE-eCCEEEEEEecCC
Confidence 65 5555511 111 222332332333 45666 88888887762
Q ss_pred CCcceEEEEecC---Cc-eeEEEec----CCCceEEEEEecCCCeEEE-EcCC--CcEEEEecCCCCc
Q 008844 314 KGEHKIYIWDRA---GY-LVKILEG----PKEALIDLAWHPVHPIIVS-VSLT--GWVYIWAKDYTEN 370 (551)
Q Consensus 314 ~~dg~I~iwd~~---~~-~~~~l~~----h~~~v~~l~~sp~~~~l~s-~s~d--g~i~iW~~~~~~~ 370 (551)
...+.+++|.+. +. ....+.. |...+..+.|+|++++|+. ++.. ..+++|++.+++.
T Consensus 379 ~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 379 EYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp GCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 112667777765 32 2334432 5667889999999987764 4433 4688999877653
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=2.6e-18 Score=173.02 Aligned_cols=160 Identities=13% Similarity=0.172 Sum_probs=122.5
Q ss_pred ccceEEEEEEcCCCCEEE----EEeCCCeEEEEeccCC--------ceeeEee-cccccccEEEEEecCC-CCEEEEEeC
Q 008844 22 EHGVMKCIAFNRRGTLLA----AGCSDGSCVIWDFETR--------GIAKELR-DKECVAAITSVCWSKY-GHRILVSAA 87 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~la----tg~~dg~I~iwd~~~~--------~~~~~~~-~~~h~~~V~~l~~s~~-g~~l~s~s~ 87 (551)
+.+.|++++|+|+|++|| +|+.|+.|+|||+.++ +.+..+. ..+|...|.+++|+|+ +.+|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 456799999999999999 7888999999999765 2222221 2345899999999997 889999999
Q ss_pred CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCC
Q 008844 88 DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKY 167 (551)
Q Consensus 88 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (551)
||+|++||++++..+.....+.
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~---------------------------------------------------------- 192 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPST---------------------------------------------------------- 192 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGG----------------------------------------------------------
T ss_pred CCeEEEEEcCCCcceeeccCCC----------------------------------------------------------
Confidence 9999999999875443332211
Q ss_pred CCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec------cCccceEEEEEeeCCCEEEEee-CCC--
Q 008844 168 SDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV------SGAAVIKNIVFSRNGQYLLTNS-NDR-- 238 (551)
Q Consensus 168 ~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~------~~~~~i~~l~~s~~g~~l~t~s-~Dg-- 238 (551)
..+++++|+|+|++|++|+.||.|++||++ ++....+.. .|...|.+++|++++.++++.+ .+|
T Consensus 193 ------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 193 ------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ------GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred ------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 178999999999999999999999999998 555444431 1234899999999888775533 343
Q ss_pred ----eEEEEeCc
Q 008844 239 ----TIRIYDNL 246 (551)
Q Consensus 239 ----~i~iwd~~ 246 (551)
.+++|++.
T Consensus 266 ~~~~~v~i~~l~ 277 (434)
T 2oit_A 266 ETSPDVVMALLP 277 (434)
T ss_dssp SSCCEEEEEECC
T ss_pred CCCCceEEEEec
Confidence 38899943
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=2.6e-19 Score=188.34 Aligned_cols=230 Identities=14% Similarity=0.122 Sum_probs=165.8
Q ss_pred cccEEEEEecCCCCEEEEEeC-CCCEEEEEcCCCeEEEEEEcC-CCeeEEEEecCCCCCcEEEEeeC---CCCcEEEEcC
Q 008844 67 VAAITSVCWSKYGHRILVSAA-DKSLTLWDVLKGEKITRIVLQ-QTPLQARLHPGSSTPSLCLACPL---SSAPMIVDLS 141 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~---~~~i~i~d~~ 141 (551)
..+|.+++|+|||++|++++. |+++.||++.++........+ ..+..+.|+|+ .+++++.. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd----~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG----RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS----EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC----eEEEEeccCCCCcceEEEEEe
Confidence 568999999999999999887 999999999766654444344 25677888886 25555554 4445665543
Q ss_pred C---CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC-EEEEEecCceEEEEECCCCcEEEeeeccCcc
Q 008844 142 T---GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD-LVYVGNSKGEILVIDHKSNQIRALVPVSGAA 217 (551)
Q Consensus 142 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 217 (551)
. +....+ .. ...+...+|+|+|+ .+++...++.+.+||+.+++...... +..
T Consensus 97 ~~~~g~~~~l--~~--------------------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~ 152 (582)
T 3o4h_A 97 TSRPGEEQRL--EA--------------------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--LPG 152 (582)
T ss_dssp TTSTTCCEEC--TT--------------------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--ESS
T ss_pred ccCCCccccc--cC--------------------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--CCC
Confidence 3 221111 00 00344678899885 34444555566699999988766553 222
Q ss_pred ceEEEEEeeCCCEEEEeeCC----CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccccccee
Q 008844 218 VIKNIVFSRNGQYLLTNSND----RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKM 293 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 293 (551)
.+++|+|||++|++++.+ +.|++||+.. +. ...+..+...+.
T Consensus 153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-----------------------------g~-~~~l~~~~~~~~-- 198 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-----------------------------GG-LRVFDSGEGSFS-- 198 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-----------------------------CC-CEEECCSSCEEE--
T ss_pred --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-----------------------------CC-ceEeecCCCccc--
Confidence 789999999999988877 7899998221 12 234455555554
Q ss_pred eeeeeEEcCCCCEEEEeeccCCcc--eEEEEecC-CceeEEEecCCCceEEEE--------EecCCCeEEEEcCCCcEEE
Q 008844 294 HWKAPCFSGDGEWVIAGSASKGEH--KIYIWDRA-GYLVKILEGPKEALIDLA--------WHPVHPIIVSVSLTGWVYI 362 (551)
Q Consensus 294 ~~~~~~~s~dg~~l~~gs~~~~dg--~I~iwd~~-~~~~~~l~~h~~~v~~l~--------~sp~~~~l~s~s~dg~i~i 362 (551)
.++|||||++|+++.. ++ .|++||+. ++.. .+.+|...+..++ |+|++.++++++.+|.++|
T Consensus 199 ---~~~~SpDG~~l~~~~~---~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l 271 (582)
T 3o4h_A 199 ---SASISPGMKVTAGLET---AREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAV 271 (582)
T ss_dssp ---EEEECTTSCEEEEEEC---SSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred ---cceECCCCCEEEEccC---CCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEE
Confidence 8899999999997666 56 89999999 7766 7788887777777 9999988899999999999
Q ss_pred Eec
Q 008844 363 WAK 365 (551)
Q Consensus 363 W~~ 365 (551)
|++
T Consensus 272 ~~~ 274 (582)
T 3o4h_A 272 FID 274 (582)
T ss_dssp EET
T ss_pred EEE
Confidence 998
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=9.2e-18 Score=164.94 Aligned_cols=285 Identities=13% Similarity=0.150 Sum_probs=196.4
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC----------CCeEEEEeccCCceeeEeeccc----ccc
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS----------DGSCVIWDFETRGIAKELRDKE----CVA 68 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~----------dg~I~iwd~~~~~~~~~~~~~~----h~~ 68 (551)
+.+||+.+++....+.. +..+ .++|+|+|++|+++.. ++.|.+||+.+++.+..+.... +..
T Consensus 33 v~v~D~~t~~~~~~i~~--g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 33 VHVYDYTNGKFLGMVPT--AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp EEEEETTTCCEEEEEEC--CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred EEEEECCCCeEEEEecC--CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence 56899888876655543 3344 8999999999998863 5789999999998888876421 124
Q ss_pred cEEEEEecCCCCEEEEEeC--CCCEEEEEcCCCeEEEE-EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC-Cc
Q 008844 69 AITSVCWSKYGHRILVSAA--DKSLTLWDVLKGEKITR-IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST-GS 144 (551)
Q Consensus 69 ~V~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~-~~ 144 (551)
....++|+|+|++|+++.. +++|.+||+.+++.+.. +... ....+.+.|.+. ..+++.+.++.+.+|++.. +.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~--~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRP--RSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSS--SEEEEEETTSSEEEEEECTTSS
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCC--eeEEEECCCCcEEEEEECCCCc
Confidence 5678999999999999874 58999999999988776 4432 233355677653 4778889999999999865 44
Q ss_pred eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE--EEeeeccC-------
Q 008844 145 TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI--RALVPVSG------- 215 (551)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~------- 215 (551)
..... ... ..... .. ....+.+++++..++..+.++.|.++|+..... ...+....
T Consensus 186 ~~~~~-~~~---~~~~~--------~~---~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T 2oiz_A 186 VASQS-RSK---QMFSV--------KD---DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN 250 (361)
T ss_dssp EEEEE-ECC---CCSCT--------TT---SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred Eeeec-ccc---ceEcC--------CC---CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence 33111 000 00000 00 112233467787777788899999999976543 22221100
Q ss_pred --ccceEEEEEeeCCCEEEEeeC-----------CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee
Q 008844 216 --AAVIKNIVFSRNGQYLLTNSN-----------DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL 282 (551)
Q Consensus 216 --~~~i~~l~~s~~g~~l~t~s~-----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (551)
......++|+|+++.++++.. .+.|.+||+ ...+.+..
T Consensus 251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~-----------------------------~t~~~v~~ 301 (361)
T 2oiz_A 251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT-----------------------------KTKQRVAR 301 (361)
T ss_dssp CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET-----------------------------TTTEEEEE
T ss_pred cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC-----------------------------CCCcEEEE
Confidence 011123789999888776543 348999992 22444555
Q ss_pred ecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-C--ceeEEEecCCCceEEEEEecCCC
Q 008844 283 FREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-G--YLVKILEGPKEALIDLAWHPVHP 349 (551)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~--~~~~~l~~h~~~v~~l~~sp~~~ 349 (551)
+..+. .. .++|+|||++|++++. +.|.|||.. + +.+..+..+......++++|+|.
T Consensus 302 i~~~~--p~-----~ia~spdg~~l~v~n~----~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 302 IPGRD--AL-----SMTIDQQRNLMLTLDG----GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECTT--CC-----EEEEETTTTEEEEECS----SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EecCC--ee-----EEEECCCCCEEEEeCC----CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 55444 33 8999999999987763 789999999 8 88888866777889999999985
No 163
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=9.5e-18 Score=164.21 Aligned_cols=234 Identities=12% Similarity=0.122 Sum_probs=147.6
Q ss_pred EEEEEe----CCCeEEEEecc--CCceeeEeecccccccEEEEEecCCCCEEEEEeC---CCCEEEEEcCCCeEEEEEEc
Q 008844 37 LLAAGC----SDGSCVIWDFE--TRGIAKELRDKECVAAITSVCWSKYGHRILVSAA---DKSLTLWDVLKGEKITRIVL 107 (551)
Q Consensus 37 ~latg~----~dg~I~iwd~~--~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~~~~~~~ 107 (551)
.|++|+ .++.|.+|.++ ++..... ....+...+..++|+|+|+ |++++. ++.|.+|++.++........
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~-~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 81 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTND-GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV 81 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEE-EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEe-eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence 345553 24567777765 4544331 1112356788899999999 665554 68999999977653211110
Q ss_pred CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCE
Q 008844 108 QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDL 187 (551)
Q Consensus 108 ~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 187 (551)
. ... ..+..++|+|+|++
T Consensus 82 ~--------~~~------------------------------------------------------~~p~~~a~spdg~~ 99 (347)
T 3hfq_A 82 V--------APG------------------------------------------------------TPPAYVAVDEARQL 99 (347)
T ss_dssp E--------EES------------------------------------------------------CCCSEEEEETTTTE
T ss_pred e--------cCC------------------------------------------------------CCCEEEEECCCCCE
Confidence 0 000 06778999999998
Q ss_pred EEEEe-cCceEEEEECC-CCcE--EEeeecc--------CccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 188 VYVGN-SKGEILVIDHK-SNQI--RALVPVS--------GAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 188 l~~g~-~dg~i~i~d~~-~~~~--~~~~~~~--------~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
|++++ .++.|.+|++. .+.. +..+... ....+.+++|+|+|+++++...++.|++|++.... .
T Consensus 100 l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g--~--- 174 (347)
T 3hfq_A 100 VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG--Q--- 174 (347)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS--C---
T ss_pred EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC--c---
Confidence 88887 67999999996 3333 3333211 12348899999999966666678999999922000 0
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC---Cce--eE
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA---GYL--VK 330 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~---~~~--~~ 330 (551)
......+..... .....++|+|||++|++++.. ++.|++|++. +.+ +.
T Consensus 175 ---------------------~~~~~~~~~~~g----~~p~~~~~spdg~~l~v~~~~--~~~v~v~~~~~~~g~~~~~~ 227 (347)
T 3hfq_A 175 ---------------------LSEQSVLTMEAG----FGPRHLVFSPDGQYAFLAGEL--SSQIASLKYDTQTGAFTQLG 227 (347)
T ss_dssp ---------------------EEEEEEEECCTT----CCEEEEEECTTSSEEEEEETT--TTEEEEEEEETTTTEEEEEE
T ss_pred ---------------------EEEeeeEEcCCC----CCCceEEECCCCCEEEEEeCC--CCEEEEEEecCCCCceEEee
Confidence 000111111111 011278999999987776542 6899999987 332 23
Q ss_pred EEecCC------CceEEEEEecCCCeEE-EEcCCCcEEEEecC
Q 008844 331 ILEGPK------EALIDLAWHPVHPIIV-SVSLTGWVYIWAKD 366 (551)
Q Consensus 331 ~l~~h~------~~v~~l~~sp~~~~l~-s~s~dg~i~iW~~~ 366 (551)
.+.... ..+..++|+|++++|+ +...++.|.+|++.
T Consensus 228 ~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 228 IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 333322 3488999999999774 45568999999987
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=5.2e-19 Score=176.37 Aligned_cols=298 Identities=11% Similarity=0.049 Sum_probs=189.9
Q ss_pred ccccCCCCccceeeccc---ccceEEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 5 IIDPLQGDFPEVIEEYL---EHGVMKCIAFNRRGTLLAAGCSD---GSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 5 lwd~~~~~~~~~l~~~~---h~~~V~~l~fs~dg~~latg~~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
.+|+.++.....+.... |...+.+++|||||++||.+... ..|.+|++.+++........ ......+.|+|+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~--~~~~~~~~~spd 91 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK--GDNTFGGFISTD 91 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS--CBCTTTCEECTT
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC--CCccccceECCC
Confidence 34777887655554311 11226788999999998877543 47888999887754443322 222334789999
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCee-E-------------------EEEecCCCCCcEEEEe----eCCCC
Q 008844 79 GHRILVSAADKSLTLWDVLKGEKITRIVLQQTPL-Q-------------------ARLHPGSSTPSLCLAC----PLSSA 134 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~-------------------~~~~p~~~~~~~~~~~----~~~~~ 134 (551)
|++|+.++.++.|.+||+.+++.......+.... . ..++|++. .+++.. .....
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCR 169 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcce
Confidence 9999999999999999999888766665444311 1 12233322 011111 34557
Q ss_pred cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee-CCCEEEEEecC------ceEEEEECCCCcE
Q 008844 135 PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK-YGDLVYVGNSK------GEILVIDHKSNQI 207 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g~~d------g~i~i~d~~~~~~ 207 (551)
+.+||+.++....+... ...+..+.|+| ++..|+..+.+ ..|.+||+.++..
T Consensus 170 l~~~d~~~g~~~~~~~~---------------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 170 LIKVDIETGELEVIHQD---------------------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp EEEEETTTCCEEEEEEE---------------------SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred EEEEECCCCcEEeeccC---------------------CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 88899988776544311 11678899999 78777666543 4699999987765
Q ss_pred EEeeeccC-ccceEEEEEeeCCCEEEEeeCC-----CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee
Q 008844 208 RALVPVSG-AAVIKNIVFSRNGQYLLTNSND-----RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA 281 (551)
Q Consensus 208 ~~~~~~~~-~~~i~~l~~s~~g~~l~t~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (551)
..... .. ...+..++|+|+|++|+.++.+ +.|++||+.. +. ..
T Consensus 229 ~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-----------------------------g~-~~ 277 (396)
T 3c5m_A 229 RKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-----------------------------LE-NE 277 (396)
T ss_dssp EESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-----------------------------CC-EE
T ss_pred eEeec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-----------------------------CC-eE
Confidence 44442 21 3468889999999988777554 4599998211 11 11
Q ss_pred eecccccccceeeeeeeEEcC-CCCEEEEeecc-------------CCcceEEEEecC-CceeEEEecCCC---------
Q 008844 282 LFREFQDSITKMHWKAPCFSG-DGEWVIAGSAS-------------KGEHKIYIWDRA-GYLVKILEGPKE--------- 337 (551)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~-------------~~dg~I~iwd~~-~~~~~~l~~h~~--------- 337 (551)
.+..... + .++|+| +|++|++++.. .++..|++||+. +.. ..+..+..
T Consensus 278 ~l~~~~~------~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 278 EVMVMPP------C-SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDR 349 (396)
T ss_dssp EEEECCS------E-EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBS
T ss_pred EeeeCCC------C-CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccc
Confidence 1111111 1 268999 99988875421 125789999998 554 44554544
Q ss_pred --ceEEEEEecCCCeEEEEcC-CCcEEEEecC
Q 008844 338 --ALIDLAWHPVHPIIVSVSL-TGWVYIWAKD 366 (551)
Q Consensus 338 --~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~ 366 (551)
.+..++|+|+++.|+.++. ++...||.+.
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2567899999998887765 5665566543
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=7.1e-17 Score=153.38 Aligned_cols=239 Identities=13% Similarity=0.211 Sum_probs=173.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc----cccccEEEEEe-cCCCCEEEEEeC-CCCEEEEEcC
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK----ECVAAITSVCW-SKYGHRILVSAA-DKSLTLWDVL 97 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~----~h~~~V~~l~~-s~~g~~l~s~s~-dg~i~vwd~~ 97 (551)
..+.+++++++|+++++...++.|.+||.. ++.+..+... .|...+.++++ .++++++++... ++.|.+|+ .
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~ 107 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q 107 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence 568999999999999888889999999987 6666555421 23467899999 467766665533 78999999 5
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
+++.+..+.... ...+.
T Consensus 108 ~g~~~~~~~~~~---------------------------------------------------------------~~~~~ 124 (286)
T 1q7f_A 108 YGQFVRKFGATI---------------------------------------------------------------LQHPR 124 (286)
T ss_dssp TSCEEEEECTTT---------------------------------------------------------------CSCEE
T ss_pred CCcEEEEecCcc---------------------------------------------------------------CCCce
Confidence 666554442110 00567
Q ss_pred EEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhh
Q 008844 178 AACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEAL 256 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (551)
.++++++|+++++...++.|.+||.. ++.+..+.. .+...+.+|+++++|+++++.+.++.|++|+..
T Consensus 125 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~---------- 193 (286)
T 1q7f_A 125 GVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE---------- 193 (286)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT----------
T ss_pred EEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC----------
Confidence 89999999977777778999999964 555555432 234568999999999988888889999999921
Q ss_pred hhhhccCCCCCcceeeeeccceeeeeeccc--ccccceeeeeeeEEcCCCCEEEEeeccCCcc-eEEEEecCCceeEEEe
Q 008844 257 VDIEKGIAEPNGIEKMKMVGSKCLALFREF--QDSITKMHWKAPCFSGDGEWVIAGSASKGEH-KIYIWDRAGYLVKILE 333 (551)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg-~I~iwd~~~~~~~~l~ 333 (551)
+..+..+... ..... .++++++|+++++... ++ .|++|+..++.+..+.
T Consensus 194 --------------------g~~~~~~~~~g~~~~p~-----~i~~d~~G~l~v~~~~---~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 194 --------------------GQYLRQIGGEGITNYPI-----GVGINSNGEILIADNH---NNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp --------------------CCEEEEESCTTTSCSEE-----EEEECTTCCEEEEECS---SSCEEEEECTTSCEEEEEE
T ss_pred --------------------CCEEEEEccCCccCCCc-----EEEECCCCCEEEEeCC---CCEEEEEECCCCCEEEEEc
Confidence 1112222211 11222 7899999998888776 65 9999997787777776
Q ss_pred cCCC--ceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 334 GPKE--ALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 334 ~h~~--~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.+.. .+.+++++|++.++++ +.++.|++|++..
T Consensus 246 ~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 246 SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 6543 4789999999987777 5699999999764
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=3.6e-17 Score=160.74 Aligned_cols=276 Identities=11% Similarity=0.038 Sum_probs=188.3
Q ss_pred CCCEEEEEe------CCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC----------CCCEEEEEcC
Q 008844 34 RGTLLAAGC------SDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA----------DKSLTLWDVL 97 (551)
Q Consensus 34 dg~~latg~------~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~----------dg~i~vwd~~ 97 (551)
+++++++.. .|+.|.+||..+++.+..+... ..+ .++|+|+|++|++++. +++|.+||+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g--~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA--FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC--EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC--CCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 556666553 3679999999999988888654 444 8999999999999863 6789999999
Q ss_pred CCeEEEEEEcC-------CCeeEEEEecCCCCCcEEEEe-eC-CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCC
Q 008844 98 KGEKITRIVLQ-------QTPLQARLHPGSSTPSLCLAC-PL-SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 98 ~~~~~~~~~~~-------~~~~~~~~~p~~~~~~~~~~~-~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
+++.+..+... ..+..+.++|++. +++++ .. ++.+.+||+.+++.....+...
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~---~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--------------- 151 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGK---FIVLQNASPATSIGIVDVAKGDYVEDVTAAA--------------- 151 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSS---EEEEEEESSSEEEEEEETTTTEEEEEEGGGT---------------
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCC---EEEEECCCCCCeEEEEECCCCcEEEEEecCC---------------
Confidence 99999888753 3467889999875 44444 33 6889999999886543201111
Q ss_pred CCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCC-CcEEEeee-----ccCccceEEEEEeeCCCEEEEeeCCCeEE
Q 008844 169 DGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKS-NQIRALVP-----VSGAAVIKNIVFSRNGQYLLTNSNDRTIR 241 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~-~~~~~~~~-----~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~ 241 (551)
....+.+.|++ ..+++.+.+|.+.+|++.. ++...... ..+..++ .+.+++++..++..+.++.|.
T Consensus 152 ------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~ 224 (361)
T 2oiz_A 152 ------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVY 224 (361)
T ss_dssp ------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEE
T ss_pred ------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEE
Confidence 11224556665 6677788899999998865 55442211 0112222 344578888888888899999
Q ss_pred EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc-----cccceeeeeeeEEcCCCCEEEEeec-cC-
Q 008844 242 IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ-----DSITKMHWKAPCFSGDGEWVIAGSA-SK- 314 (551)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~s~dg~~l~~gs~-~~- 314 (551)
++|+.... ......+.... .......+..++|+|+++.++++.. +.
T Consensus 225 v~d~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 225 SADFSGDE---------------------------VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp EEECSSSS---------------------------CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred EEEecCCC---------------------------ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 99931110 00000000000 0000011124789999988877643 10
Q ss_pred ------CcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 315 ------GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 315 ------~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
..+.|.+||+. ++.+..+..+. +..|+|+|++++|++++. +.|.|||..++
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 13589999999 99999999877 999999999999999887 99999999987
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=1.8e-17 Score=162.13 Aligned_cols=287 Identities=11% Similarity=0.030 Sum_probs=178.9
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEE-EEeCCCeEEEEeccCCceeeEeecccc----cccEEEEEec
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLA-AGCSDGSCVIWDFETRGIAKELRDKEC----VAAITSVCWS 76 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~la-tg~~dg~I~iwd~~~~~~~~~~~~~~h----~~~V~~l~~s 76 (551)
.|.+||+.+++....+... ....+..++|+|+|++++ ++..++.|.+||+.+++.+..+..... ...+.+++|+
T Consensus 22 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~s 100 (349)
T 1jmx_B 22 NLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 100 (349)
T ss_dssp EEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC
T ss_pred eEEEEECCCCcEEEEEecC-CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEEC
Confidence 3679999888765555431 112578899999998665 455689999999999988877764311 2347889999
Q ss_pred CCCCEEEEEeCC------------CCEEEEEcCCC---eEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC
Q 008844 77 KYGHRILVSAAD------------KSLTLWDVLKG---EKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLS 141 (551)
Q Consensus 77 ~~g~~l~s~s~d------------g~i~vwd~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~ 141 (551)
|+|++|++++.+ +.|.+||+.++ ..+..+..+..+..+.|+|++. +++ + ++.+.+||+.
T Consensus 101 pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---l~~-~--~~~i~~~d~~ 174 (349)
T 1jmx_B 101 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS---LYV-A--GPDIYKMDVK 174 (349)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC---EEE-E--SSSEEEECTT
T ss_pred CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc---EEE-c--cCcEEEEeCC
Confidence 999999998865 89999999884 3345556666678888999874 333 3 3449999999
Q ss_pred CCceeeecc-ccCCCCCCCCCCCCCCCCCCCCCC---CceEEEEeeCCCEEEEEec-CceEEEEECCCCcEEEeeeccCc
Q 008844 142 TGSTSILPI-AVPDVANGIAPSSRNKYSDGTPPF---TPTAACFNKYGDLVYVGNS-KGEILVIDHKSNQIRALVPVSGA 216 (551)
Q Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~ 216 (551)
+++...... ..........+............. .+..+++++++........ ...+..++..+++....-...+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
T 1jmx_B 175 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT 254 (349)
T ss_dssp TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence 887554221 110000000000000000000000 2344566655422211111 11233366666665322222456
Q ss_pred cceEEEEEee-CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeee
Q 008844 217 AVIKNIVFSR-NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHW 295 (551)
Q Consensus 217 ~~i~~l~~s~-~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 295 (551)
..+.+++|+| ++++|+++ ++.|.+||+. +.+.+..+.. ...+.
T Consensus 255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~-----------------------------~~~~~~~~~~-~~~~~---- 298 (349)
T 1jmx_B 255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLK-----------------------------QRKLIKAANL-DHTYY---- 298 (349)
T ss_dssp SCEEEEEECSSCTTEEEEE--ESEEEEEETT-----------------------------TTEEEEEEEC-SSCCC----
T ss_pred CcceeeEecCCCCCEEEEE--cCeEEEEECc-----------------------------cCeEEEEEcC-CCCcc----
Confidence 6788999999 99999888 8899999921 1222222221 12233
Q ss_pred eeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecC
Q 008844 296 KAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGP 335 (551)
Q Consensus 296 ~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h 335 (551)
.++|+|+|++|++++. ++.|++||+. ++.+..+..+
T Consensus 299 -~~~~s~dg~~l~~~~~---~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 299 -CVAFDKKGDKLYLGGT---FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp -EEEECSSSSCEEEESB---SSEEEEEETTTTEEEEEEECS
T ss_pred -ceEECCCCCEEEEecC---CCeEEEEeccccceeeeeecC
Confidence 7899999999998776 8999999999 8888887755
No 168
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=1.4e-15 Score=156.99 Aligned_cols=313 Identities=11% Similarity=0.017 Sum_probs=211.4
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEecc--CCceeeEeecccccccEEEEEec----
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFE--TRGIAKELRDKECVAAITSVCWS---- 76 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~--~~~~~~~~~~~~h~~~V~~l~~s---- 76 (551)
|.++|+.+++....+.. ...+.+++|+|||++|++++.++.|.+||+. +++.+..+... .....++|+
T Consensus 179 V~viD~~t~~v~~~i~~---g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G---~~P~~ia~s~~~~ 252 (567)
T 1qks_A 179 IALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---SEARSIETSKMEG 252 (567)
T ss_dssp EEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---SEEEEEEECCSTT
T ss_pred EEEEECCCCeEEEEEeC---CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC---CCCceeEEccccC
Confidence 56788888876655543 3456799999999999999999999999996 78888777653 346799999
Q ss_pred CCCCEEEEEeC-CCCEEEEEcCCCeEEEEEEcCC------------CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 77 KYGHRILVSAA-DKSLTLWDVLKGEKITRIVLQQ------------TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 77 ~~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~------------~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
|+|++|++++. +++|.|+|..+.+.+..+.... .+..+..++.+ +.+++.....+.+.++|....
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~--~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR--PEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEETTCS
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC--CEEEEEecCCCeEEEEecCCC
Confidence 69999988876 6999999999999988876431 23455555543 456677777789999998775
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCCCcEEEeeec----cCccc
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQIRALVPV----SGAAV 218 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~----~~~~~ 218 (551)
.......... ......+.|+|+|++|+++. .++.|.++|+.+++.+..+.. .|.+.
T Consensus 331 ~~~~v~~i~~-------------------~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~ 391 (567)
T 1qks_A 331 NNLKTTEISA-------------------ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 391 (567)
T ss_dssp SEEEEEEEEC-------------------CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred ccceeeeeec-------------------cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence 4222111000 01456789999999988776 578999999999998777764 23322
Q ss_pred eEEEEEeeCCCEE-EEee-CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 219 IKNIVFSRNGQYL-LTNS-NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 219 i~~l~~s~~g~~l-~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
-..+ ++|++..+ +++. .+++|.+++.. +..... ...+.+..+......-.
T Consensus 392 g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~-~~~~~~---------------------~~~kvv~~i~~~g~g~~----- 443 (567)
T 1qks_A 392 GANF-VHPTFGPVWATSHMGDDSVALIGTD-PEGHPD---------------------NAWKILDSFPALGGGSL----- 443 (567)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECC-TTTCTT---------------------TBTSEEEEEECSCSCCC-----
T ss_pred ceee-ECCCCCcEEEeCCCCCCeEEEecCC-CCCCcc---------------------ccCEEEEEEecCCCCCE-----
Confidence 2222 57875444 4443 46899999922 100000 00112233322211111
Q ss_pred eeEEcCCCCEEEEeeccCC----cceEEEEecC-C-----c-eeEEEec--------CCCceEEEEEecCCCeEEEEc--
Q 008844 297 APCFSGDGEWVIAGSASKG----EHKIYIWDRA-G-----Y-LVKILEG--------PKEALIDLAWHPVHPIIVSVS-- 355 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~~~~----dg~I~iwd~~-~-----~-~~~~l~~--------h~~~v~~l~~sp~~~~l~s~s-- 355 (551)
.+.++|++++|.+...-+. ...|.|+|+. . . ....+.. ....+..+.|+|+|..|..+.
T Consensus 444 ~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~ 523 (567)
T 1qks_A 444 FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN 523 (567)
T ss_dssp CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEEC
T ss_pred EEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeec
Confidence 4678999999998763111 2589999998 5 2 1233321 234689999999999766653
Q ss_pred ---CCCcEEEEecCCCCc
Q 008844 356 ---LTGWVYIWAKDYTEN 370 (551)
Q Consensus 356 ---~dg~i~iW~~~~~~~ 370 (551)
.++.|.|+|..+.+.
T Consensus 524 ~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 524 GKDQESALVVVDDKTLEL 541 (567)
T ss_dssp CTTSCCEEEEEETTTTEE
T ss_pred CCCCCCcEEEEECCCceE
Confidence 378999999988764
No 169
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.78 E-value=2.1e-16 Score=151.01 Aligned_cols=257 Identities=12% Similarity=0.117 Sum_probs=176.4
Q ss_pred CCccccccCC------CCccceeecccccceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEE
Q 008844 1 MNAPIIDPLQ------GDFPEVIEEYLEHGVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSV 73 (551)
Q Consensus 1 mnl~lwd~~~------~~~~~~l~~~~h~~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l 73 (551)
|-+.++|+.- +...+.+.. +.....+++|+|+|+ +++++..++.|.+|+..++ ...+..+ ...+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~l 74 (296)
T 3e5z_A 1 MTLRAARPEFLDLFPAGAEARRLAD--GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP--SHHQNGH 74 (296)
T ss_dssp -CEEESSGGGGGGSCTTCCCEEEEC--CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS--CSSEEEE
T ss_pred CceEecChhHHhhcCCCCcEEEEec--CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC--CCCccee
Confidence 5566777652 222333332 345678999999998 7888888999999999877 5566544 6789999
Q ss_pred EecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccC
Q 008844 74 CWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVP 153 (551)
Q Consensus 74 ~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 153 (551)
+|+++|+++++...++.|.+||..+++........... +
T Consensus 75 ~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~------~----------------------------------- 113 (296)
T 3e5z_A 75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGK------K----------------------------------- 113 (296)
T ss_dssp EECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTE------E-----------------------------------
T ss_pred eECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCC------C-----------------------------------
Confidence 99999998777766789999998887653322110000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEE----Ee-------------cCceEEEEECCCCcEEEeeeccCc
Q 008844 154 DVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYV----GN-------------SKGEILVIDHKSNQIRALVPVSGA 216 (551)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----g~-------------~dg~i~i~d~~~~~~~~~~~~~~~ 216 (551)
...+..++++|+|+++++ |+ ..+.|..++.. ++..... .+.
T Consensus 114 -------------------~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~ 171 (296)
T 3e5z_A 114 -------------------LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--RDR 171 (296)
T ss_dssp -------------------CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--CCC
T ss_pred -------------------CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee--cCC
Confidence 005667889999987776 33 13567777766 5544333 556
Q ss_pred cceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeecccee---eeeeccccccccee
Q 008844 217 AVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKC---LALFREFQDSITKM 293 (551)
Q Consensus 217 ~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~ 293 (551)
.....++|+|+|+.|++.+.++.|.+|++... +.. ...+......+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~----------------------------g~~~~~~~~~~~~~~~p~-- 221 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR----------------------------GETEYQGVHFTVEPGKTD-- 221 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSS----------------------------SCEEEEEEEECCSSSCCC--
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCC----------------------------CcCcCCCeEeeCCCCCCC--
Confidence 67789999999998877778899999992100 000 111111222222
Q ss_pred eeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEE-ecCCCeEEEEcCCCcEEEEecC
Q 008844 294 HWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAW-HPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 294 ~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~-sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
.++++++|+++++. . +.|++|+..++.+..+..+.. +.+++| .|++..|++++.++ +.-++..
T Consensus 222 ---~i~~d~~G~l~v~~-~----~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 222 ---GLRVDAGGLIWASA-G----DGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp ---SEEEBTTSCEEEEE-T----TEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred ---eEEECCCCCEEEEc-C----CeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 78999999977666 3 579999998888888888877 999999 58988888888664 3334443
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1e-16 Score=155.54 Aligned_cols=250 Identities=12% Similarity=0.143 Sum_probs=176.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeccCCceeeEeecccccccEEEEEecCCC
Q 008844 24 GVMKCIAFNRRGTLLAAGCSD------------------------GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYG 79 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~d------------------------g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g 79 (551)
+.+.+|+|+|+|+++++...+ +.|.+||..+++++..+.. .+-..+..|+++++|
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-NLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-TTCSSEEEEEECTTS
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-CccCCceEEEECCCC
Confidence 679999999999999988777 4799999998988766542 335678999999999
Q ss_pred CEEEEEeCCCCEEEEEcCCCe-EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCC
Q 008844 80 HRILVSAADKSLTLWDVLKGE-KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
+++++...++.|.+|+..... .+..+..... +.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-------~g--------------------------------------- 136 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-------PG--------------------------------------- 136 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTB-------CC---------------------------------------
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCC-------CC---------------------------------------
Confidence 988888888999999974331 2222211000 00
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEee-CCCEEEEEe-cCceEEEEECCCCcEEEeeecc---------CccceEEEEEeeC
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNK-YGDLVYVGN-SKGEILVIDHKSNQIRALVPVS---------GAAVIKNIVFSRN 227 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~---------~~~~i~~l~~s~~ 227 (551)
....+-..+..++++| +|.++++.+ .++.|.+|+ ..+..+..+... +......|+++|+
T Consensus 137 ---------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~ 206 (329)
T 3fvz_A 137 ---------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH 206 (329)
T ss_dssp ---------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred ---------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence 0000111678999999 788777775 689999999 566666655311 1234789999998
Q ss_pred -CCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec--ccccccceeeeeeeEEcC--
Q 008844 228 -GQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR--EFQDSITKMHWKAPCFSG-- 302 (551)
Q Consensus 228 -g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~s~-- 302 (551)
+.++++...++.|++|+.. ++..+..+. .+...+. .++|+|
T Consensus 207 ~g~l~v~d~~~~~I~~~~~~-----------------------------~G~~~~~~~~~~~~~~~~-----~~~~~pg~ 252 (329)
T 3fvz_A 207 LDQLCVADRENGRIQCFKTD-----------------------------TKEFVREIKHASFGRNVF-----AISYIPGF 252 (329)
T ss_dssp TTEEEEEETTTTEEEEEETT-----------------------------TCCEEEEECCTTTTTCEE-----EEEEETTE
T ss_pred CCEEEEEECCCCEEEEEECC-----------------------------CCcEEEEEeccccCCCcc-----eeeecCCE
Confidence 7777777789999999921 122233331 2222333 677888
Q ss_pred ----CCCEEEEeeccCCcceEEEEecC-CceeEEEe---cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 303 ----DGEWVIAGSASKGEHKIYIWDRA-GYLVKILE---GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 303 ----dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~---~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+|+..++... ...|++|+.. ++.+..+. ++...+..|+++|++.++++...++.|++|++..
T Consensus 253 ~~~~~g~~~v~~~~---~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 253 LFAVNGKPYFGDQE---PVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCCCTTCSC---CCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEeCCCEEeccCC---CcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333322233 5689999988 98888874 5667799999999998888888899999999864
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=4.5e-17 Score=161.94 Aligned_cols=259 Identities=12% Similarity=0.051 Sum_probs=171.6
Q ss_pred EEeccCCceeeEeecccccccEEE-----EEecCCCCEEEEEeC-CCC--EEEEEcCCCeEEEEEEcCCCe-eEEEEecC
Q 008844 49 IWDFETRGIAKELRDKECVAAITS-----VCWSKYGHRILVSAA-DKS--LTLWDVLKGEKITRIVLQQTP-LQARLHPG 119 (551)
Q Consensus 49 iwd~~~~~~~~~~~~~~h~~~V~~-----l~~s~~g~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~-~~~~~~p~ 119 (551)
.++..++..+..+..+ ...... .+|+|||++|+.++. ++. |.+||+.+++.......+... ....|+|+
T Consensus 14 ~~~~~~g~~~~~lt~~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPP--DVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EECTTTCCEEEECSCT--TSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred EecCCCCcceEEecCC--cccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 4577778888777655 555555 789999999999887 664 888899888877665555443 36789998
Q ss_pred CCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce--EEEEeeCCCEEEEEe-----
Q 008844 120 SSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT--AACFNKYGDLVYVGN----- 192 (551)
Q Consensus 120 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~g~~l~~g~----- 192 (551)
+. .++.+..+..+++||+.++....+..... ..+. ...+++++.+++...
T Consensus 92 g~---~l~~~~~~~~l~~~d~~~g~~~~~~~~~~--------------------~~~~~~~~~~~~dg~~l~~~~~~~~~ 148 (388)
T 3pe7_A 92 DD---ALFYVKDGRNLMRVDLATLEENVVYQVPA--------------------EWVGYGTWVANSDCTKLVGIEIRRED 148 (388)
T ss_dssp SS---EEEEEETTTEEEEEETTTCCEEEEEECCT--------------------TEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred CC---EEEEEeCCCeEEEEECCCCcceeeeechh--------------------hcccccceeECCCCCeeccccccCcc
Confidence 75 67777778899999999987654422110 0222 234588998877432
Q ss_pred -----------------cCceEEEEECCCCcEEEeeeccCccceEEEEEee-CCCEEEEeeCC------CeEEEEeCcCC
Q 008844 193 -----------------SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSR-NGQYLLTNSND------RTIRIYDNLLP 248 (551)
Q Consensus 193 -----------------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~D------g~i~iwd~~~~ 248 (551)
.++.|.+||+.+++..... .+...+..++|+| +|+.|+.++.+ ..|.+++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-- 224 (388)
T 3pe7_A 149 WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED-- 224 (388)
T ss_dssp CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT--
T ss_pred cccccccchhhhhhccCCcceEEEEECCCCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC--
Confidence 3478999999999876655 5566789999999 99998877653 256666611
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc--cccceeeeeeeEEcCCCCEEEEeeccCCc--ceEEEEec
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ--DSITKMHWKAPCFSGDGEWVIAGSASKGE--HKIYIWDR 324 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~s~dg~~l~~gs~~~~d--g~I~iwd~ 324 (551)
+.....+..+. ..+. .++|||||+.|+..+...+. ..|++||+
T Consensus 225 ----------------------------~~~~~~l~~~~~~~~~~-----~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 225 ----------------------------GTNMRKVKTHAEGESCT-----HEFWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp ----------------------------SCCCEESCCCCTTEEEE-----EEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred ----------------------------CCceEEeeeCCCCcccc-----cceECCCCCEEEEEecCCCCCcceEEEEec
Confidence 11122222222 1222 67899999988776653222 24999999
Q ss_pred C-CceeE--EEecCCC---ceEEEEEecCCCeEEEE---------cCCCcEEEEecCCCC
Q 008844 325 A-GYLVK--ILEGPKE---ALIDLAWHPVHPIIVSV---------SLTGWVYIWAKDYTE 369 (551)
Q Consensus 325 ~-~~~~~--~l~~h~~---~v~~l~~sp~~~~l~s~---------s~dg~i~iW~~~~~~ 369 (551)
. ++... .+.++.. ....++|+|+++.|+.. ..+..|++|++.+++
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 9 65332 3332111 12224799999987754 446789999998754
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=1.4e-15 Score=148.60 Aligned_cols=256 Identities=11% Similarity=0.104 Sum_probs=173.3
Q ss_pred ccceEEEEEEcCCCCEEEEEe---------CCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC---C
Q 008844 22 EHGVMKCIAFNRRGTLLAAGC---------SDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD---K 89 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~---------~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d---g 89 (551)
....+..++| ||++||... .++.|.+|++.+++.. .+ ..+.+++|+|+|++|+.++.+ +
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l------~~~~~~~~SpDg~~la~~~~~~~~~ 83 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI------ENATMPRISPDGKKIAFMRANEEKK 83 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE------ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec------ccCCCeEECCCCCEEEEEEeccCCC
Confidence 3456778888 899887652 2567999999987643 33 457889999999999887753 2
Q ss_pred --CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEee-C--------------------------CCCcEEEEc
Q 008844 90 --SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACP-L--------------------------SSAPMIVDL 140 (551)
Q Consensus 90 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~--------------------------~~~i~i~d~ 140 (551)
.|.+|++.+++.......+. +..+.|+|++. .++.++ . ...+.+|++
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEAKN-IRSLEWNEDSR---KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEESE-EEEEEECTTSS---EEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred cceEEEEECCCCceEEEEcCCC-ccceeECCCCC---EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 38888988888766665555 88899999874 333333 2 246888898
Q ss_pred CCCce-eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC---------ceEEEEECCCCcEEEe
Q 008844 141 STGST-SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK---------GEILVIDHKSNQIRAL 210 (551)
Q Consensus 141 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d---------g~i~i~d~~~~~~~~~ 210 (551)
.++.. ..+.. . .+..++|+|+| +++++..+ ..|.++| +++....
T Consensus 160 ~~~~~~~~l~~--~---------------------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 213 (347)
T 2gop_A 160 ESEEVIEEFEK--P---------------------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKM 213 (347)
T ss_dssp TTTEEEEEEEE--E---------------------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEE
T ss_pred CCCeEEeeecC--C---------------------CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEe
Confidence 88765 33211 0 45678999999 77777543 2466666 5555444
Q ss_pred eeccCccceEEEEEeeCCCEEEEeeCCC--------eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee
Q 008844 211 VPVSGAAVIKNIVFSRNGQYLLTNSNDR--------TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL 282 (551)
Q Consensus 211 ~~~~~~~~i~~l~~s~~g~~l~t~s~Dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (551)
. .+ ..+..+ +|+|++|+.++.++ .|.+|| . +.....
T Consensus 214 ~--~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-----------------------------~~~~~l 257 (347)
T 2gop_A 214 F--EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-----------------------------KEVMGI 257 (347)
T ss_dssp E--EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-----------------------------SCEEES
T ss_pred c--cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-----------------------------CceEec
Confidence 3 23 455544 99999988877543 566665 1 122222
Q ss_pred ecccccccceeeeee-eEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcE
Q 008844 283 FREFQDSITKMHWKA-PCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWV 360 (551)
Q Consensus 283 ~~~~~~~v~~~~~~~-~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i 360 (551)
...+...+. . ++|+ +| ++++++. ++.++|| +. ++....+ .+...|.+++|+| .++++++.++..
T Consensus 258 ~~~~~~~~~-----~~~~~s-dg-~~~~~~~---~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~ 323 (347)
T 2gop_A 258 LDEVDRGVG-----QAKIKD-GK-VYFTLFE---EGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRL 323 (347)
T ss_dssp STTCCSEEE-----EEEEET-TE-EEEEEEE---TTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSC
T ss_pred cccCCcccC-----CccEEc-Cc-EEEEEec---CCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCCh
Confidence 233333333 4 7899 88 8888887 8899999 87 7664444 4577899999999 677777766654
Q ss_pred -EEEecC
Q 008844 361 -YIWAKD 366 (551)
Q Consensus 361 -~iW~~~ 366 (551)
.||.++
T Consensus 324 ~~l~~~~ 330 (347)
T 2gop_A 324 RELFTWD 330 (347)
T ss_dssp CEEEEES
T ss_pred HHheEeC
Confidence 777765
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=6.5e-16 Score=150.18 Aligned_cols=277 Identities=10% Similarity=0.140 Sum_probs=187.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
..|.+++|++++..++..+.++.++.| .+.....+..+ ...+.+++|+++|++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKK--GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESS--CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEecc--CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 457888999998888777788899999 34555556544 5678999999999987888889999999998887665
Q ss_pred EEE-cCCCeeEEEEecCCCCCcEEEEeeCC----CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 104 RIV-LQQTPLQARLHPGSSTPSLCLACPLS----SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 104 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
... ....+..+.+.|++. ++++...+ +.|.+|+..++.......... ....+..
T Consensus 81 ~~~~~~~~~~~i~~~~dg~---l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------------~~~~~~~ 139 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGR---LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS------------------TAYCIDD 139 (333)
T ss_dssp EEECSSSSEEEEEECTTSC---EEEEECTTSSSCCEEEEECTTSCSCEEEECSSS------------------SCCCEEE
T ss_pred EeeCCCCCcceEEECCCCc---EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc------------------cCCcccc
Confidence 443 345688889988763 55555555 589999988776542211000 1126889
Q ss_pred EEEeeCCCEEEEEec------CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEE-eeCCCeEEEEeCcCCccc
Q 008844 179 ACFNKYGDLVYVGNS------KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLT-NSNDRTIRIYDNLLPLKN 251 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t-~s~Dg~i~iwd~~~~~~~ 251 (551)
++++|+|+++++... .+.|..|+..+++..... .+...+..++|+|+|++|++ .+.++.|.+|++.... .
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g-~ 216 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG-V 216 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-S
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC-c
Confidence 999999987776553 367888887766654433 23345788999999986654 4567899999921100 0
Q ss_pred cchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEE
Q 008844 252 GLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKI 331 (551)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~ 331 (551)
. +..........+..+ .. ...++++++|+++++... ++.|++|+..++.+..
T Consensus 217 ---~----------------~~~~~~~~~~~~~~~-~~-----~~~i~~d~~G~l~v~~~~---~~~v~~~d~~g~~~~~ 268 (333)
T 2dg1_A 217 ---T----------------IQPFGATIPYYFTGH-EG-----PDSCCIDSDDNLYVAMYG---QGRVLVFNKRGYPIGQ 268 (333)
T ss_dssp ---S----------------EEEEEEEEEEECCSS-SE-----EEEEEEBTTCCEEEEEET---TTEEEEECTTSCEEEE
T ss_pred ---C----------------cccccceEEEecCCC-CC-----CCceEECCCCCEEEEEcC---CCEEEEECCCCCEEEE
Confidence 0 000000000011111 11 227899999998877766 7899999988777777
Q ss_pred EecCCC------ceEEEEEecCCCeEEEEcCC
Q 008844 332 LEGPKE------ALIDLAWHPVHPIIVSVSLT 357 (551)
Q Consensus 332 l~~h~~------~v~~l~~sp~~~~l~s~s~d 357 (551)
+..+.. .+.+++|+|++..|+.++.+
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 765543 68999999998776655554
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=4.9e-16 Score=165.96 Aligned_cols=289 Identities=11% Similarity=0.009 Sum_probs=182.1
Q ss_pred ccceEEEEEEcCCCCEEEEE--eCCCeEEEEeccCCceeeEeecccccccEE---------EEEec--CCCCE-EEEEeC
Q 008844 22 EHGVMKCIAFNRRGTLLAAG--CSDGSCVIWDFETRGIAKELRDKECVAAIT---------SVCWS--KYGHR-ILVSAA 87 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg--~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~---------~l~~s--~~g~~-l~s~s~ 87 (551)
|...|..++|++++-++++. +.++...||....+.....+..+ ...+. ...|+ |||++ |+.++.
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPA--PWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT--TCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCC--CccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 67889999999887777776 55789999996555556666554 44554 55565 99998 776654
Q ss_pred -CCCEEEEEcC--C-CeEEEEEEc------CCCeeEEEEecCCCCCcEEEEeeCC----------CCcEEEEcCC-----
Q 008844 88 -DKSLTLWDVL--K-GEKITRIVL------QQTPLQARLHPGSSTPSLCLACPLS----------SAPMIVDLST----- 142 (551)
Q Consensus 88 -dg~i~vwd~~--~-~~~~~~~~~------~~~~~~~~~~p~~~~~~~~~~~~~~----------~~i~i~d~~~----- 142 (551)
+..|.+|++. . +. ...+.. ......+.|+|++. .+++++.+ ..|++|++.+
T Consensus 100 ~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~---~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERG---EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTT---EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCC---EEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 5667777765 2 43 333333 22456889999875 45555544 4788999887
Q ss_pred -CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC--------ceEEEEECC-CC---cEEE
Q 008844 143 -GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK--------GEILVIDHK-SN---QIRA 209 (551)
Q Consensus 143 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d--------g~i~i~d~~-~~---~~~~ 209 (551)
+....+.. .+...+..++|+|+|++|+.++.+ ..|++||+. ++ +...
T Consensus 176 ~~~~~~l~~--------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 176 RSAVRELSD--------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp GGGSEESSC--------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred CCceeEEEe--------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 44432210 011256778999999999887754 489999999 56 3333
Q ss_pred eeeccCccceEEEEEeeCCCEEEEeeCCCe--EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc
Q 008844 210 LVPVSGAAVIKNIVFSRNGQYLLTNSNDRT--IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ 287 (551)
Q Consensus 210 ~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (551)
.. ..+...+..++|+|+|++++++..++. |.+|++. ++....... +.
T Consensus 236 l~-~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~-----------------------------~~~~~~l~~-~~ 284 (662)
T 3azo_A 236 LL-GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA-----------------------------TGAATQLCR-RE 284 (662)
T ss_dssp EE-EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTT-----------------------------TCCEEESSC-CS
T ss_pred eC-CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECC-----------------------------CCceeeccc-cc
Confidence 33 245688999999999998888888884 4555410 111111111 11
Q ss_pred cccceee----eeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEE-EEecCCCeEEEEcCCCc--E
Q 008844 288 DSITKMH----WKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDL-AWHPVHPIIVSVSLTGW--V 360 (551)
Q Consensus 288 ~~v~~~~----~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l-~~sp~~~~l~s~s~dg~--i 360 (551)
..+.... ...++|+|++++++++.. + ...|+++++.+..+..+..|...+..+ +++++.-++++++.+.. |
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-G-AAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBS-S-SCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEc-C-ccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 1111111 126789999999888875 2 344444466644577888887778777 55443334445555544 5
Q ss_pred EEEecCCCC
Q 008844 361 YIWAKDYTE 369 (551)
Q Consensus 361 ~iW~~~~~~ 369 (551)
++|++.+++
T Consensus 363 ~~~d~~~g~ 371 (662)
T 3azo_A 363 VELDTVTGR 371 (662)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 555655554
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=1.8e-16 Score=171.28 Aligned_cols=308 Identities=9% Similarity=0.029 Sum_probs=184.8
Q ss_pred CccccccCCCCccceeecccccc-----eEEEEEEcCCCCEEEEEeCC---------CeEEEEeccCCceeeEeeccccc
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHG-----VMKCIAFNRRGTLLAAGCSD---------GSCVIWDFETRGIAKELRDKECV 67 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~-----~V~~l~fs~dg~~latg~~d---------g~I~iwd~~~~~~~~~~~~~~h~ 67 (551)
+|.+||+.+++....+.. |.. ....++|||||++|+.++.+ +.+.+||+.+++... +..+ .
T Consensus 37 ~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~--~ 111 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLEN--STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERI--P 111 (740)
T ss_dssp EEEEEETTTCCEEEEECT--TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCC--C
T ss_pred cEEEEECCCCceEEEEec--hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccC--C
Confidence 478999998876555443 221 22447899999999998875 567799999987654 4433 6
Q ss_pred ccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC-CC-e-----------------eEEEEecCCCCCcEEEE
Q 008844 68 AAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ-QT-P-----------------LQARLHPGSSTPSLCLA 128 (551)
Q Consensus 68 ~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~-~-----------------~~~~~~p~~~~~~~~~~ 128 (551)
..+..++|||||+.|+.+. ++.|.+|++.++...+..... .. + ..+.|+|+++ .++.
T Consensus 112 ~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~---~la~ 187 (740)
T 4a5s_A 112 NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT---FLAY 187 (740)
T ss_dssp TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS---EEEE
T ss_pred CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC---EEEE
Confidence 7899999999999999885 789999999888754322111 11 1 2378999875 3433
Q ss_pred e-eCCCCcEEEE-----------------------------------cCC---C---ceeeeccccCCCCCCCCCCCCCC
Q 008844 129 C-PLSSAPMIVD-----------------------------------LST---G---STSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 129 ~-~~~~~i~i~d-----------------------------------~~~---~---~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
. ..++.+.+|+ +.+ + ....+....
T Consensus 188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~-------------- 253 (740)
T 4a5s_A 188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA-------------- 253 (740)
T ss_dssp EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH--------------
T ss_pred EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc--------------
Confidence 3 3333344444 333 2 111110000
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEec----CceEEEEECCCCc----EE---EeeeccCccceE-----EEEEeeCCCE
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNS----KGEILVIDHKSNQ----IR---ALVPVSGAAVIK-----NIVFSRNGQY 230 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~----dg~i~i~d~~~~~----~~---~~~~~~~~~~i~-----~l~~s~~g~~ 230 (551)
....+...+..++|+|+|+.++.... +..|.+||+.+++ +. ..+...+...|. .++|+|||+.
T Consensus 254 -~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 254 -SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp -HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred -cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 00013346889999999997666543 3479999999887 22 111123444443 7889999998
Q ss_pred EE-Eee-CCC--eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCE
Q 008844 231 LL-TNS-NDR--TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEW 306 (551)
Q Consensus 231 l~-t~s-~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~ 306 (551)
|+ ..+ .+| .|++|+.. +.... .+......+. .+ +++|++.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~-----------------------------~~~~~-~lT~g~~~v~-----~~-~~~d~~~ 376 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQID-----------------------------KKDCT-FITKGTWEVI-----GI-EALTSDY 376 (740)
T ss_dssp EEEEEECTTSCEEEEEEETT-----------------------------CSSCE-ESCCSSSCEE-----EE-EEECSSE
T ss_pred EEEEEEcCCCceEEEEEECC-----------------------------CCceE-ecccCCEEEE-----EE-EEEeCCE
Confidence 76 555 344 46666611 12212 2222222222 21 2244777
Q ss_pred EEEeecc----CCcceEEEEecC-CceeEEEec----CCCceEEEEEecCCCeEEEEcCC---CcEEEEecCCCC
Q 008844 307 VIAGSAS----KGEHKIYIWDRA-GYLVKILEG----PKEALIDLAWHPVHPIIVSVSLT---GWVYIWAKDYTE 369 (551)
Q Consensus 307 l~~gs~~----~~dg~I~iwd~~-~~~~~~l~~----h~~~v~~l~~sp~~~~l~s~s~d---g~i~iW~~~~~~ 369 (551)
|+..+.. .+...|+..++. +.....+.. ....+..+.|+|++.+++..... ..+.+++..+++
T Consensus 377 i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 377 LYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp EEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred EEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 7666542 123456666666 333324442 23568899999999976654432 357777776543
No 176
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.72 E-value=2.5e-15 Score=148.05 Aligned_cols=231 Identities=13% Similarity=0.081 Sum_probs=148.3
Q ss_pred EEEEEeCC--CeEEEEec--cCCceeeEeec-ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC-CCeEEEEEEcCCC
Q 008844 37 LLAAGCSD--GSCVIWDF--ETRGIAKELRD-KECVAAITSVCWSKYGHRILVSAADKSLTLWDVL-KGEKITRIVLQQT 110 (551)
Q Consensus 37 ~latg~~d--g~I~iwd~--~~~~~~~~~~~-~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~ 110 (551)
+|++|+.. +.|.+|++ .++.+...-.. -.+...+..++|+|+|++|++++.+ .|.+|++. +++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~- 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI- 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-
Confidence 45566653 56888765 45544222111 0113468899999999999999887 99999997 776543222100
Q ss_pred eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCE--E
Q 008844 111 PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDL--V 188 (551)
Q Consensus 111 ~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--l 188 (551)
.+ .+.+++|+|+|++ +
T Consensus 82 --------~g------------------------------------------------------~~~~~~~spdg~~l~~ 99 (365)
T 1jof_A 82 --------GG------------------------------------------------------HPRANDADTNTRAIFL 99 (365)
T ss_dssp --------CS------------------------------------------------------SGGGGCTTSCCEEEEE
T ss_pred --------CC------------------------------------------------------CCccEEECCCCCEEEE
Confidence 00 2334677888874 4
Q ss_pred EEEe-------------cCceEEEEECC-CCcEEEeeec---cCccceEEEEEeeCCCEEEEeeC-CCeEEEEeCcCCcc
Q 008844 189 YVGN-------------SKGEILVIDHK-SNQIRALVPV---SGAAVIKNIVFSRNGQYLLTNSN-DRTIRIYDNLLPLK 250 (551)
Q Consensus 189 ~~g~-------------~dg~i~i~d~~-~~~~~~~~~~---~~~~~i~~l~~s~~g~~l~t~s~-Dg~i~iwd~~~~~~ 250 (551)
++++ .+|.+.+|++. .++....+.. .+...+.+++|+|+|++|+++.. ++.|++|++. +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~-~-- 176 (365)
T 1jof_A 100 LAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL-A-- 176 (365)
T ss_dssp EECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC-T--
T ss_pred EEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC-C--
Confidence 4443 68899999997 4665433321 24567999999999998887654 6899999921 0
Q ss_pred ccchhhhhhhccCCCCCcceeeeecccee--eeeec--ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-
Q 008844 251 NGLEALVDIEKGIAEPNGIEKMKMVGSKC--LALFR--EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA- 325 (551)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~- 325 (551)
++.. +..+. .+...+. .++|+|+|++|++++.. ++.|.+|++.
T Consensus 177 -------------------------~g~~~~~~~~~~~~~g~~p~-----~~~~spdg~~l~v~~~~--~~~v~v~~~~~ 224 (365)
T 1jof_A 177 -------------------------SGEVELVGSVDAPDPGDHPR-----WVAMHPTGNYLYALMEA--GNRICEYVIDP 224 (365)
T ss_dssp -------------------------TSCEEEEEEEECSSTTCCEE-----EEEECTTSSEEEEEETT--TTEEEEEEECT
T ss_pred -------------------------CCCEEEeeeEecCCCCCCCC-----EeEECCCCCEEEEEECC--CCeEEEEEEeC
Confidence 0111 11111 1112222 78999999999887752 5789999875
Q ss_pred --Ccee---EEEec-------CCC------ceEEEE-EecCCCeEEEEcCC-C-----cEEEEecC
Q 008844 326 --GYLV---KILEG-------PKE------ALIDLA-WHPVHPIIVSVSLT-G-----WVYIWAKD 366 (551)
Q Consensus 326 --~~~~---~~l~~-------h~~------~v~~l~-~sp~~~~l~s~s~d-g-----~i~iW~~~ 366 (551)
|++. ..+.. |.. .+..++ |+|++++|++++.+ + .|.+|++.
T Consensus 225 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 5542 22221 222 588999 99999988877642 2 89999986
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=1.4e-13 Score=131.18 Aligned_cols=278 Identities=10% Similarity=-0.014 Sum_probs=188.7
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
...+.+++++++|+++++...++.|.+||.. +... .+....+...+.+|++.++|.++++...++.|..|+.. +..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~- 89 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII- 89 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-
Confidence 3678999999999988877668899999988 5543 33322235679999999999988777668889999976 443
Q ss_pred EEEEc---CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 103 TRIVL---QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 103 ~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
..+.. ...+..+.+.+++ .++++...++.+..|+. ++......... ....+..+
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~d~-~g~~~~~~~~~-------------------~~~~~~~i 146 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNG---DIWFTEMNGNRIGRITD-DGKIREYELPN-------------------KGSYPSFI 146 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTS---CEEEEETTTTEEEEECT-TCCEEEEECSS-------------------TTCCEEEE
T ss_pred EEEeCCCcCCCceeeEECCCC---CEEEEecCCceEEEECC-CCCEEEecCCC-------------------CCCCCceE
Confidence 33332 2356778887764 36666666788999988 55443221110 01167899
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
+++++|+++++....+.|.+||. +++............+.+++++++|+++++...++.|.+|+. ..
T Consensus 147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g----------- 213 (299)
T 2z2n_A 147 TLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG----------- 213 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-----------
T ss_pred EEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC-----------
Confidence 99999987777777889999999 766654322134566889999999987777767889999982 11
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEE-EecCCCc
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKI-LEGPKEA 338 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~-l~~h~~~ 338 (551)
.............+. .++++++|++.++... ++.|.+|+..+..... +..+...
T Consensus 214 -----------------~~~~~~~~~~~~~~~-----~i~~~~~g~l~v~~~~---~~~i~~~d~~g~~~~~~~~~~~~~ 268 (299)
T 2z2n_A 214 -----------------EITEFKIPTPNARPH-----AITAGAGIDLWFTEWG---ANKIGRLTSNNIIEEYPIQIKSAE 268 (299)
T ss_dssp -----------------CEEEEECSSTTCCEE-----EEEECSTTCEEEEETT---TTEEEEEETTTEEEEEECSSSSCC
T ss_pred -----------------cEEEEECCCCCCCce-----eEEECCCCCEEEeccC---CceEEEECCCCceEEEeCCCCCCc
Confidence 000000111112222 7899999986666545 6889999987543322 2344567
Q ss_pred eEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 339 LIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 339 v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+.++++ +++.++++.+ .+.|..++..+
T Consensus 269 ~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 269 PHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred cceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 899999 8888777766 56666677654
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=6.2e-15 Score=142.80 Aligned_cols=273 Identities=10% Similarity=0.054 Sum_probs=185.7
Q ss_pred ccccccCCCCccceeecc----cccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC
Q 008844 3 APIIDPLQGDFPEVIEEY----LEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY 78 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~----~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~ 78 (551)
|.+||+.++++...+... ........+++. +++++++...++.|.+||..+++.+..+.. ......|+++++
T Consensus 19 l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~---~~~p~~i~~~~~ 94 (328)
T 3dsm_A 19 LSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG---FTSPRYIHFLSD 94 (328)
T ss_dssp EEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC---CSSEEEEEEEET
T ss_pred EEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC---CCCCcEEEEeCC
Confidence 678899888765544211 111345777774 355555666679999999999999888853 467889999998
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCC------CeeEEEEecCCCCCcEEEEee-CCCCcEEEEcCCCceeeeccc
Q 008844 79 GHRILVSAADKSLTLWDVLKGEKITRIVLQQ------TPLQARLHPGSSTPSLCLACP-LSSAPMIVDLSTGSTSILPIA 151 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~ 151 (551)
++++++...++.|.+||+.+++....+.... .+..+.+ .+ ..++++.. .++.|.++|+.+++......
T Consensus 95 g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~---~~lyv~~~~~~~~v~viD~~t~~~~~~i~- 169 (328)
T 3dsm_A 95 EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG---KYVYVNCWSYQNRILKIDTETDKVVDELT- 169 (328)
T ss_dssp TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET---TEEEEEECTTCCEEEEEETTTTEEEEEEE-
T ss_pred CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC---CEEEEEcCCCCCEEEEEECCCCeEEEEEE-
Confidence 8544444378999999999999888887766 5666666 22 23445544 48899999999887543211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC----------ceEEEEECCCCcEEEeeeccCccceEE
Q 008844 152 VPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK----------GEILVIDHKSNQIRALVPVSGAAVIKN 221 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d----------g~i~i~d~~~~~~~~~~~~~~~~~i~~ 221 (551)
.. ..+..++++++|++++++..+ +.|.+||..+++....+..........
T Consensus 170 ~g--------------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~ 229 (328)
T 3dsm_A 170 IG--------------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE 229 (328)
T ss_dssp CS--------------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred cC--------------------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence 00 045678899999877766554 799999999998877765443457899
Q ss_pred EEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceee--eeecccccccceeeeeeeE
Q 008844 222 IVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCL--ALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 222 l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~ 299 (551)
++|+|++++|+++.. .|.+||.... ... ..+...... ...++
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~t~-----------------------------~~~~~~~~~~~~~~-----p~gi~ 273 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVEAD-----------------------------RVPVRPFLEFRDTK-----YYGLT 273 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETTCS-----------------------------SCCSSCSBCCCSSC-----EEEEE
T ss_pred EEEecCCCEEEEEcc--EEEEEECCCC-----------------------------ceeeeeeecCCCCc-----eEEEE
Confidence 999999998888755 8889982111 000 000000111 12789
Q ss_pred EcCCCCEEEEee-----ccCCcceEEEEecCCceeEEEecCCCceEEEEE
Q 008844 300 FSGDGEWVIAGS-----ASKGEHKIYIWDRAGYLVKILEGPKEALIDLAW 344 (551)
Q Consensus 300 ~s~dg~~l~~gs-----~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~ 344 (551)
++|++..|+++. . ++.|.+|+..|+++..+.. ......++|
T Consensus 274 vdp~~g~lyva~~~~y~~---~~~V~v~d~~g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 274 VNPNNGEVYVADAIDYQQ---QGIVYRYSPQGKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp ECTTTCCEEEEECTTSSS---EEEEEEECTTCCEEEEEEE-EESEEEEEE
T ss_pred EcCCCCeEEEEccccccc---CCEEEEECCCCCEEEEEEe-ccCcceEEE
Confidence 999544444443 4 7899999999888887764 233455555
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=5.5e-16 Score=154.37 Aligned_cols=262 Identities=12% Similarity=0.022 Sum_probs=164.5
Q ss_pred ccccccCCCCccceeecccccce-EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEE---------
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGV-MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITS--------- 72 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~-V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~--------- 72 (551)
|.+||..+++..... . +... ..++.|+|||++|+.++.++.|++|++.+++....+..+ ......
T Consensus 62 l~~~d~~~~~~~~l~-~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~g~~l~~~~~ 136 (396)
T 3c5m_A 62 YYLLNLETQQAVQLT-E--GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD--EEWKGYGTWVANSDC 136 (396)
T ss_dssp EEEEETTTTEEEECC-C--SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC--TTEEEEEEEEECTTS
T ss_pred EEEEECCCCcEEEee-c--CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc--cccCCCCCEEEeccC
Confidence 556677666532221 1 2222 334789999999999999999999999988766555533 222222
Q ss_pred ----------EEecCCCCEEEEE-----eCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEec-CCCCCcEEEEeeCC----
Q 008844 73 ----------VCWSKYGHRILVS-----AADKSLTLWDVLKGEKITRIVLQQTPLQARLHP-GSSTPSLCLACPLS---- 132 (551)
Q Consensus 73 ----------l~~s~~g~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~---- 132 (551)
+.|+|+++.++.+ ..+..|.+||+.+++..........+..+.|+| ++. .++.+..+
T Consensus 137 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~---~l~~~~~~~~~~ 213 (396)
T 3c5m_A 137 TKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDS---TVGFCHEGPHDL 213 (396)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEE---EEEEEECSCSSS
T ss_pred CccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCC---EEEEEecCCCCC
Confidence 3567888777654 356789999999988776666666678889999 543 23333322
Q ss_pred --CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-----ceEEEEECCCC
Q 008844 133 --SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-----GEILVIDHKSN 205 (551)
Q Consensus 133 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-----g~i~i~d~~~~ 205 (551)
..|.+|++..+....+... .....+..++|+|+|++|+.++.+ +.|++||+.++
T Consensus 214 ~~~~l~~~d~~~~~~~~l~~~-------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 214 VDARMWLVNEDGSNVRKIKEH-------------------AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp CSCCCEEEETTSCCCEESSCC-------------------CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCceEEEEECCCCceeEeecc-------------------CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 4688888876553322110 001157788999999987776544 55999999988
Q ss_pred cEEEeeeccCccceEEEEEee-CCCEEEEee----------------CCCeEEEEeCcCCccccchhhhhhhccCCCCCc
Q 008844 206 QIRALVPVSGAAVIKNIVFSR-NGQYLLTNS----------------NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNG 268 (551)
Q Consensus 206 ~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s----------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (551)
+........ ... +.|+| +|++|++++ .++.|++||+..
T Consensus 275 ~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~--------------------- 329 (396)
T 3c5m_A 275 ENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA--------------------- 329 (396)
T ss_dssp CEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT---------------------
T ss_pred CeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc---------------------
Confidence 765443211 233 89999 999888754 347799998221
Q ss_pred ceeeeeccceeeeeecccccccc------eeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 269 IEKMKMVGSKCLALFREFQDSIT------KMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
+. ...+..+...+. ......++|+|+|++|+.++...+...|+++++.
T Consensus 330 --------~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~ 383 (396)
T 3c5m_A 330 --------KS-AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP 383 (396)
T ss_dssp --------TB-CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred --------Cc-eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence 11 111222221000 0001167899999999888764334456666666
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=4.3e-14 Score=145.93 Aligned_cols=284 Identities=13% Similarity=0.069 Sum_probs=197.6
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC--CCeEEEEEEcCCC
Q 008844 33 RRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVL--KGEKITRIVLQQT 110 (551)
Q Consensus 33 ~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~ 110 (551)
+.+.++++...+++|.+||..+++.+..+.. ...+..+.|+|+|++|++++.++.|.+||+. +++.+..+.....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC---CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence 4455677777889999999999999988864 3467799999999999999999999999995 8889999988888
Q ss_pred eeEEEEe----cCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC-CCCceEEEEeeCC
Q 008844 111 PLQARLH----PGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP-PFTPTAACFNKYG 185 (551)
Q Consensus 111 ~~~~~~~----p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g 185 (551)
+..+.|+ |++. .++++....+.+.++|..+.+.............. ...+ ...+..+..++++
T Consensus 242 P~~ia~s~~~~pDGk--~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~----------~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 242 ARSIETSKMEGWEDK--YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE----------QEYHPEPRVAAILASHYR 309 (567)
T ss_dssp EEEEEECCSTTCTTT--EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT----------CCEESCCCEEEEEECSSS
T ss_pred CceeEEccccCCCCC--EEEEEEccCCeEEEEECCCCcEEEEEecccccccc----------ccccCCCceEEEEEcCCC
Confidence 8999999 5764 46677778899999998887765432111000000 0000 1156778888887
Q ss_pred CEEEEE-ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee-CCCeEEEEeCcCCccccchhhhhhhccC
Q 008844 186 DLVYVG-NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS-NDRTIRIYDNLLPLKNGLEALVDIEKGI 263 (551)
Q Consensus 186 ~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (551)
..+++. ...|.|.++|......+.............+.|+|+|++|++++ .++.|.++|+..
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t---------------- 373 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE---------------- 373 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT----------------
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC----------------
Confidence 655444 55799999999887553333324456677899999999987665 578999999221
Q ss_pred CCCCcceeeeeccceeeeeec-----ccccccceeeeeeeE-EcCCCCEEEEeeccCCcceEEEEecC--------Ccee
Q 008844 264 AEPNGIEKMKMVGSKCLALFR-----EFQDSITKMHWKAPC-FSGDGEWVIAGSASKGEHKIYIWDRA--------GYLV 329 (551)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~s~dg~~l~~gs~~~~dg~I~iwd~~--------~~~~ 329 (551)
.+.+..+. .|.. . .+. +.|++..+.+.+.- +++.|.+++.. .+.+
T Consensus 374 -------------~kl~~~i~vgg~~Phpg--~-----g~~~~~p~~g~v~~t~~~-g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 374 -------------GKLVAIEDTGGQTPHPG--R-----GANFVHPTFGPVWATSHM-GDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp -------------TEEEEEEECSSSSBCCT--T-----CEEEEETTTEEEEEEEBS-SSSEEEEEECCTTTCTTTBTSEE
T ss_pred -------------CcEEEEEeccCcCCCCc--c-----ceeeECCCCCcEEEeCCC-CCCeEEEecCCCCCCccccCEEE
Confidence 22122211 1111 1 222 57875555443321 16899999987 2467
Q ss_pred EEEecCCCceEEEEEecCCCeEEEEcC-------CCcEEEEecCCC
Q 008844 330 KILEGPKEALIDLAWHPVHPIIVSVSL-------TGWVYIWAKDYT 368 (551)
Q Consensus 330 ~~l~~h~~~v~~l~~sp~~~~l~s~s~-------dg~i~iW~~~~~ 368 (551)
+.+......-..+..||++++|.+... .++|.|+|+.+.
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 777765444466889999998888663 358999999876
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=1.6e-14 Score=155.26 Aligned_cols=283 Identities=11% Similarity=0.016 Sum_probs=181.7
Q ss_pred CCCCEEEEEeCC-----CeEEEEeccCCceeeEeec----ccccccEEEEEecCCCCEEEEEeCCC-----CEEEEEcCC
Q 008844 33 RRGTLLAAGCSD-----GSCVIWDFETRGIAKELRD----KECVAAITSVCWSKYGHRILVSAADK-----SLTLWDVLK 98 (551)
Q Consensus 33 ~dg~~latg~~d-----g~I~iwd~~~~~~~~~~~~----~~h~~~V~~l~~s~~g~~l~s~s~dg-----~i~vwd~~~ 98 (551)
|+|++++....+ +.|.+.+..++.....+.. .+|...+.+++|||||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 889988766533 2345555544443322221 12345789999999999998776533 899999999
Q ss_pred CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCC----------------cEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 99 GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSA----------------PMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
|+.+...........+.|+|++. .++.+..++. |++|++.++......+...
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~--------- 228 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGK---GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF--------- 228 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSS---EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC---------
T ss_pred CCCCcccccCcccceEEEEeCCC---EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc---------
Confidence 98776443333356789999875 4555555544 8899998776321111000
Q ss_pred CCCCCCCCCCCCCceEEEEeeCCCEEEEEec-----CceEEEEECCC------Cc-EEEeeeccCccceEEEEEeeCCCE
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-----KGEILVIDHKS------NQ-IRALVPVSGAAVIKNIVFSRNGQY 230 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~~i~~l~~s~~g~~ 230 (551)
..+...+..+.|+|+|++|+.++. +..|++||+.+ +. ....+. .+...+.. .|+++|..
T Consensus 229 -------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~s~dg~~ 299 (710)
T 2xdw_A 229 -------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI-DNFEGEYD-YVTNEGTV 299 (710)
T ss_dssp -------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSCEE-EEEEETTE
T ss_pred -------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee-CCCCcEEE-EEeccCCE
Confidence 011124678999999999988765 56899999986 53 233332 44444444 58899988
Q ss_pred EEEeeCC----CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc--ccceeeeeeeEEcCCC
Q 008844 231 LLTNSND----RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD--SITKMHWKAPCFSGDG 304 (551)
Q Consensus 231 l~t~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~s~dg 304 (551)
|+..+.. +.|.+|++..+. ......+..+.. .+. .++|++++
T Consensus 300 l~~~s~~~~~~~~l~~~d~~~~~---------------------------~~~~~~l~~~~~~~~~~-----~~~~~~~~ 347 (710)
T 2xdw_A 300 FTFKTNRHSPNYRLINIDFTDPE---------------------------ESKWKVLVPEHEKDVLE-----WVACVRSN 347 (710)
T ss_dssp EEEEECTTCTTCEEEEEETTSCC---------------------------GGGCEEEECCCSSCEEE-----EEEEETTT
T ss_pred EEEEECCCCCCCEEEEEeCCCCC---------------------------cccceeccCCCCCCeEE-----EEEEEcCC
Confidence 7766553 358888832110 001122222222 233 67888777
Q ss_pred CEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEE-c---CCCcEEEEecCCCC
Q 008844 305 EWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSV-S---LTGWVYIWAKDYTE 369 (551)
Q Consensus 305 ~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~-s---~dg~i~iW~~~~~~ 369 (551)
.++++...+. ...|++|++. |+.+..+..+.+.+..++++|++..|+.. + ..+.|++|++.+++
T Consensus 348 ~lv~~~~~~g-~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 348 FLVLCYLHDV-KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEEETT-EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEEECC-EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7777777611 2357788885 88888888888889999999998755533 2 25789999998766
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=1.5e-14 Score=141.37 Aligned_cols=198 Identities=13% Similarity=0.128 Sum_probs=135.3
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC---C--eEEEEeccCCceeeEeecccccccEEEEEecC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD---G--SCVIWDFETRGIAKELRDKECVAAITSVCWSK 77 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d---g--~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~ 77 (551)
|.+||..+++. ..+ ..+.+++|||||++||.++.+ + .|.+|++.+++........ . +.+++|+|
T Consensus 45 l~~~d~~~~~~-~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~-~~~~~wsp 113 (347)
T 2gop_A 45 IVIENLKNNAR-RFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK---N-IRSLEWNE 113 (347)
T ss_dssp EEEEETTTCCE-EEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---E-EEEEEECT
T ss_pred EEEEeCCCCce-EEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---C-ccceeECC
Confidence 56777776653 222 457889999999999987654 3 4888888887765554432 3 99999999
Q ss_pred CCCEEEEEeCC---------------------------CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEee
Q 008844 78 YGHRILVSAAD---------------------------KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACP 130 (551)
Q Consensus 78 ~g~~l~s~s~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 130 (551)
+|+.|+.++.+ ..|.+||+.+++.+..+... .+..+.|+|++ +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg----~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK----IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE----EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe----EEEEEe
Confidence 99998887632 57999999988874444433 67788999976 455554
Q ss_pred CCC-------CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC--------c
Q 008844 131 LSS-------APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK--------G 195 (551)
Q Consensus 131 ~~~-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d--------g 195 (551)
.+. ...+|.+.++....+... ..+..+ +|+|++|+.++.+ .
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~~~~~l~~~----------------------~~~~~~--spdg~~l~~~~~~~~~~~~~~~ 244 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDGKEEKMFEK----------------------VSFYAV--DSDGERILLYGKPEKKYMSEHN 244 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETTEEEEEEEE----------------------ESEEEE--EECSSCEEEEECCSSSCCCSSC
T ss_pred cccccccccccccEEEeCCCceEEeccC----------------------cceeeE--CCCCCEEEEEEccccCCccccc
Confidence 432 334554444443322111 033333 9999988877643 4
Q ss_pred eEEEEECCCCcEEEeeeccCccceEE-EEEeeCCCEEEEeeCCCeEEEEeCc
Q 008844 196 EILVIDHKSNQIRALVPVSGAAVIKN-IVFSRNGQYLLTNSNDRTIRIYDNL 246 (551)
Q Consensus 196 ~i~i~d~~~~~~~~~~~~~~~~~i~~-l~~s~~g~~l~t~s~Dg~i~iwd~~ 246 (551)
.|.+|| +++...... .+...+.. +.|+ ++ ++++++.++.++|| +.
T Consensus 245 ~l~~~d--~~~~~~l~~-~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 245 KLYIYD--GKEVMGILD-EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EEEEEC--SSCEEESST-TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred eEEEEC--CCceEeccc-cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 788888 665544442 45677886 9999 88 88899999999999 54
No 183
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=9.2e-16 Score=163.85 Aligned_cols=192 Identities=11% Similarity=0.033 Sum_probs=132.3
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEecc--CCceeeEeeccc---ccccEEEEEecCCCCEEEEEeCC----------
Q 008844 28 CIAFN--RRGTL-LAAGCS-DGSCVIWDFE--TRGIAKELRDKE---CVAAITSVCWSKYGHRILVSAAD---------- 88 (551)
Q Consensus 28 ~l~fs--~dg~~-latg~~-dg~I~iwd~~--~~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~s~d---------- 88 (551)
...|+ |||++ ||.++. +..|.+|++. +......+.... |...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45555 99998 776654 5667777765 203445554421 46789999999999999998876
Q ss_pred CCEEEEEcCC------CeEEEEE-EcCCCeeEEEEecCCCCCcEEEEeeCC--------CCcEEEEcC-CC---ceeeec
Q 008844 89 KSLTLWDVLK------GEKITRI-VLQQTPLQARLHPGSSTPSLCLACPLS--------SAPMIVDLS-TG---STSILP 149 (551)
Q Consensus 89 g~i~vwd~~~------~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~--------~~i~i~d~~-~~---~~~~~~ 149 (551)
..|.+||+.+ +...... ..+.....+.|+|++. .++.++.+ ..|.+|++. ++ ....+.
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~---~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGR---QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSS---EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCC---EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 5899999987 5543332 2234456788999875 44444433 469999998 46 332221
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc--eEEEEECCCCcEEEeeeccCccc--------e
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG--EILVIDHKSNQIRALVPVSGAAV--------I 219 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~--------i 219 (551)
.. +...+..++|+|+|++++++..+| .|.+||+.+++...... .+... +
T Consensus 238 ~~--------------------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~ 296 (662)
T 3azo_A 238 GG--------------------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGM 296 (662)
T ss_dssp EE--------------------TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTC
T ss_pred CC--------------------CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccC
Confidence 11 011678899999999888888788 77788877777655543 22221 5
Q ss_pred EEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 220 KNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
..++|+|+++++++++. +.++||.
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 297 RWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp CSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred ceEeEeCCCEEEEEEEc-CccEEEE
Confidence 67899999999999988 9999995
No 184
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.68 E-value=3.9e-14 Score=136.16 Aligned_cols=265 Identities=14% Similarity=0.134 Sum_probs=175.2
Q ss_pred CCccccccCCCCccceeecccccceEEEEEEcCCCCEEEE-------EeCCCeEEEEeccCCceeeEeec--ccccccEE
Q 008844 1 MNAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAA-------GCSDGSCVIWDFETRGIAKELRD--KECVAAIT 71 (551)
Q Consensus 1 mnl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~lat-------g~~dg~I~iwd~~~~~~~~~~~~--~~h~~~V~ 71 (551)
|+|.+.++....+... -....+++|+++|+++++ +..++.|.+|+..+++....... .++...+.
T Consensus 1 ~~i~~~~~~~~~~~~~------~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 74 (314)
T 1pjx_A 1 MEIPVIEPLFTKVTED------IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA 74 (314)
T ss_dssp CCSCEECCCCEEEECC------CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE
T ss_pred CccccccHhHhhhhcc------CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc
Confidence 8889998875543222 234678999999998887 56788999999887776433210 11256789
Q ss_pred EEEecCC-CCEEEEEeCCCCEEEEEcCCCeEEEE-EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeec
Q 008844 72 SVCWSKY-GHRILVSAADKSLTLWDVLKGEKITR-IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILP 149 (551)
Q Consensus 72 ~l~~s~~-g~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 149 (551)
+++++++ ++++++ +....|.+||.. ++.... ......
T Consensus 75 ~i~~~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~--------------------------------------- 113 (314)
T 1pjx_A 75 GCQCDRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEG--------------------------------------- 113 (314)
T ss_dssp EEEECSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTS---------------------------------------
T ss_pred eEEEecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCC---------------------------------------
Confidence 9999999 664444 444578889987 654221 110000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC---------------ceEEEEECCCCcEEEeeecc
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK---------------GEILVIDHKSNQIRALVPVS 214 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d---------------g~i~i~d~~~~~~~~~~~~~ 214 (551)
.....+.+++++++|+++++...+ +.|..|+.. ++..... .
T Consensus 114 ---------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~ 169 (314)
T 1pjx_A 114 ---------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD--T 169 (314)
T ss_dssp ---------------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--E
T ss_pred ---------------------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec--c
Confidence 000157788999999877766554 678888876 5554433 3
Q ss_pred CccceEEEEEe----eCCCEEEEe-eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc-c
Q 008844 215 GAAVIKNIVFS----RNGQYLLTN-SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ-D 288 (551)
Q Consensus 215 ~~~~i~~l~~s----~~g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 288 (551)
+......++|+ ++++.|+++ ..++.|.+|+..... . .........+..+. .
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g--~---------------------~~~~~~~~~~~~~~~~ 226 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA--K---------------------IENKKVWGHIPGTHEG 226 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT--E---------------------EEEEEEEEECCCCSSC
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC--c---------------------cccceEEEECCCCCCC
Confidence 34456889999 999766554 567899999821000 0 00000111111111 1
Q ss_pred ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeE-EEEcCCCcEEEEecC
Q 008844 289 SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPII-VSVSLTGWVYIWAKD 366 (551)
Q Consensus 289 ~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iW~~~ 366 (551)
.. ..++++++|+++++... ++.|.+|+.. ++.+..+..+...+.+++|+|++..| ++...++.|..|++.
T Consensus 227 ~p-----~~i~~d~~G~l~v~~~~---~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 227 GA-----DGMDFDEDNNLLVANWG---SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EE-----EEEEEBTTCCEEEEEET---TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CC-----CceEECCCCCEEEEEcC---CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 22 27899999998888766 7899999999 88888888777889999999999944 455557899999987
Q ss_pred C
Q 008844 367 Y 367 (551)
Q Consensus 367 ~ 367 (551)
.
T Consensus 299 ~ 299 (314)
T 1pjx_A 299 R 299 (314)
T ss_dssp S
T ss_pred C
Confidence 5
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=1.3e-14 Score=136.19 Aligned_cols=240 Identities=9% Similarity=0.042 Sum_probs=161.2
Q ss_pred eEEEEEEcCCCCEEE-EEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 25 VMKCIAFNRRGTLLA-AGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 25 ~V~~l~fs~dg~~la-tg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
...+++++++|++++ +...++.|.+|+..+..... +. ..+...+.+|++.++|+++++.. ++.|.+||...+.. .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LP-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-T 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CC-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Ee-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-e
Confidence 678999999999777 44678899999986554322 21 12245678999999998666555 88899998754432 1
Q ss_pred EEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee
Q 008844 104 RIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK 183 (551)
Q Consensus 104 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 183 (551)
.+... ....+..+++++
T Consensus 101 ~~~~~---------------------------------------------------------------~~~~p~~i~~~~ 117 (270)
T 1rwi_B 101 VLPFD---------------------------------------------------------------GLNYPEGLAVDT 117 (270)
T ss_dssp ECCCC---------------------------------------------------------------SCSSEEEEEECT
T ss_pred eeecC---------------------------------------------------------------CcCCCcceEECC
Confidence 11000 001577899999
Q ss_pred CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccC
Q 008844 184 YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGI 263 (551)
Q Consensus 184 ~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (551)
+|+++++...++.|.+|+..+........ .....+.+|+++++|+++++...++.|.+|+...
T Consensus 118 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---------------- 180 (270)
T 1rwi_B 118 QGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES---------------- 180 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT----------------
T ss_pred CCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC----------------
Confidence 99877777778999999876655433221 3334678899999999777777788999998211
Q ss_pred CCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEe-cCCCceEEE
Q 008844 264 AEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILE-GPKEALIDL 342 (551)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~-~h~~~v~~l 342 (551)
.............. ..++++++|.++++... ++.|++|+..+.....+. .+...+.++
T Consensus 181 -------------~~~~~~~~~~~~~p-----~~i~~d~~g~l~v~~~~---~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 181 -------------NNQVVLPFTDITAP-----WGIAVDEAGTVYVTEHN---TNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp -------------CCEEECCCSSCCSE-----EEEEECTTCCEEEEETT---TSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred -------------CceEeecccCCCCc-----eEEEECCCCCEEEEECC---CCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 11011101111122 27899999977766665 688999999844333332 233578999
Q ss_pred EEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 343 AWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 343 ~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+++|++.++++...++.|+++++...+
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 999999988888889999999987543
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=4.7e-14 Score=132.64 Aligned_cols=215 Identities=14% Similarity=0.116 Sum_probs=162.9
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeE
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQ 113 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 113 (551)
.+++|++++.++.|.+||..+++.+..+..+. ...+.++.++|+|++|+ +.++.|..||. +|+.+..+..+...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~-- 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK-GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC-- 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT-TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC--
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc-cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc--
Confidence 46789999999999999999999999987651 14688999999999888 34788999998 89988887753210
Q ss_pred EEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec
Q 008844 114 ARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS 193 (551)
Q Consensus 114 ~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~ 193 (551)
.+.++.+.++|+++++.+.
T Consensus 78 -------------------------------------------------------------~~~~~~~~~dG~~lv~~~~ 96 (276)
T 3no2_A 78 -------------------------------------------------------------EMQTARILPDGNALVAWCG 96 (276)
T ss_dssp -------------------------------------------------------------EEEEEEECTTSCEEEEEES
T ss_pred -------------------------------------------------------------cccccEECCCCCEEEEecC
Confidence 4566778889999988887
Q ss_pred -CceEEEEECCCCcEEEeeecc-----CccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCC
Q 008844 194 -KGEILVIDHKSNQIRALVPVS-----GAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPN 267 (551)
Q Consensus 194 -dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (551)
++.|..+|. +++.+..+... +......+++.++|++|++...++.|..||.
T Consensus 97 ~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~---------------------- 153 (276)
T 3no2_A 97 HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP---------------------- 153 (276)
T ss_dssp TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT----------------------
T ss_pred CCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC----------------------
Confidence 888888886 67776665422 1124456678899999999999999999991
Q ss_pred cceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC------CceE
Q 008844 268 GIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK------EALI 340 (551)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~------~~v~ 340 (551)
. ++.+..+... .... .+.+.++|++++++.. ++.|..+|.. |+.+..+..+. ..+.
T Consensus 154 -------~-G~~~w~~~~~-~~~~-----~~~~~~~g~~~v~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~ 216 (276)
T 3no2_A 154 -------N-GQLLNSVKLS-GTPF-----SSAFLDNGDCLVACGD---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVA 216 (276)
T ss_dssp -------T-SCEEEEEECS-SCCC-----EEEECTTSCEEEECBT---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEE
T ss_pred -------C-CCEEEEEECC-CCcc-----ceeEcCCCCEEEEeCC---CCeEEEEeCcCCcEEEEecCCCCCCccccccc
Confidence 1 2223333222 1222 5677899999999887 7889999999 99999887542 2377
Q ss_pred EEEEecCCCeEEEEc
Q 008844 341 DLAWHPVHPIIVSVS 355 (551)
Q Consensus 341 ~l~~sp~~~~l~s~s 355 (551)
.++..+++.++++..
T Consensus 217 ~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 217 QLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred cceEcCCCCEEEEec
Confidence 888889999888773
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=3.2e-15 Score=160.29 Aligned_cols=245 Identities=11% Similarity=0.060 Sum_probs=157.2
Q ss_pred cceEEEEEEcCCCCEEEEE-----eCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCC-------
Q 008844 23 HGVMKCIAFNRRGTLLAAG-----CSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKS------- 90 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg-----~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~------- 90 (551)
...+.+++|||||++||.+ +.+.+|++||+.+++.+...... ......++|+|||+.|+.++.|..
T Consensus 120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--cccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 3468999999999999943 34568999999998865111111 111268999999999999988776
Q ss_pred ------EEEEEcCCCeE--EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCC
Q 008844 91 ------LTLWDVLKGEK--ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPS 162 (551)
Q Consensus 91 ------i~vwd~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 162 (551)
|.+|++.++.. ...+...
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~------------------------------------------------------ 223 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERT------------------------------------------------------ 223 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCC------------------------------------------------------
T ss_pred CCCCCEEEEEECCCCchhceEEEecC------------------------------------------------------
Confidence 88888766541 1111100
Q ss_pred CCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc----eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee---
Q 008844 163 SRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG----EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS--- 235 (551)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s--- 235 (551)
.+...+..+.|+|+|++|++++.++ .|++|+..++...... .+...+....+ ++|.+++.+.
T Consensus 224 --------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~--~~~~~~~~~~~-~~g~l~~~s~~~~ 292 (695)
T 2bkl_A 224 --------GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV--KGVGAKYEVHA-WKDRFYVLTDEGA 292 (695)
T ss_dssp --------CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE--ECSSCCEEEEE-ETTEEEEEECTTC
T ss_pred --------CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee--cCCCceEEEEe-cCCcEEEEECCCC
Confidence 0111567889999999888877665 7888877666654444 34445566666 6666444433
Q ss_pred CCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc-ccccceeeeeeeEEcCCCCEEEEeeccC
Q 008844 236 NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF-QDSITKMHWKAPCFSGDGEWVIAGSASK 314 (551)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~s~dg~~l~~gs~~~ 314 (551)
.++.|.+|++..+.. ......+..+ ...+. .++|+ ++.++++...
T Consensus 293 ~~~~l~~~d~~~~~~--------------------------~~~~~l~~~~~~~~l~-----~~~~~-~~~lv~~~~~-- 338 (695)
T 2bkl_A 293 PRQRVFEVDPAKPAR--------------------------ASWKEIVPEDSSASLL-----SVSIV-GGHLSLEYLK-- 338 (695)
T ss_dssp TTCEEEEEBTTBCSG--------------------------GGCEEEECCCSSCEEE-----EEEEE-TTEEEEEEEE--
T ss_pred CCCEEEEEeCCCCCc--------------------------cCCeEEecCCCCCeEE-----EEEEE-CCEEEEEEEE--
Confidence 257899998321100 0001111111 22233 56777 6677777777
Q ss_pred CcceEEEEecC--CceeEEEecC-CCceEEEEEecCCCeEEEE----cCCCcEEEEecCCCC
Q 008844 315 GEHKIYIWDRA--GYLVKILEGP-KEALIDLAWHPVHPIIVSV----SLTGWVYIWAKDYTE 369 (551)
Q Consensus 315 ~dg~I~iwd~~--~~~~~~l~~h-~~~v~~l~~sp~~~~l~s~----s~dg~i~iW~~~~~~ 369 (551)
++..+||.+. |..+..+..+ ...+..++++|++..|+.. ...++|++|++.+++
T Consensus 339 -dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 339 -DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp -TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6777776554 7667777665 6678889999999866632 235789999998765
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.65 E-value=1.4e-12 Score=127.99 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=188.2
Q ss_pred EEcCCCCEEEEEeC--CC---eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe----------CCCCEEEE
Q 008844 30 AFNRRGTLLAAGCS--DG---SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA----------ADKSLTLW 94 (551)
Q Consensus 30 ~fs~dg~~latg~~--dg---~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s----------~dg~i~vw 94 (551)
...|+++++++... .. +|.+||..+++.+..+... ..+ .++++|||++|+++. .++.|.+|
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g--~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG--FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC--CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 45578888877653 22 8899999999988887643 333 999999999999886 36789999
Q ss_pred EcCCCeEEEEEEcC--------CCeeEEEEecCCCCCcEEEEee-C-CCCcEEEEcCCCceeeeccccCCCCCCCCCCCC
Q 008844 95 DVLKGEKITRIVLQ--------QTPLQARLHPGSSTPSLCLACP-L-SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSR 164 (551)
Q Consensus 95 d~~~~~~~~~~~~~--------~~~~~~~~~p~~~~~~~~~~~~-~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (551)
|..+++.+..+... ..+..+.++|++. .++++. . ++.|.++| .+++.....+.
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~---~l~v~n~~~~~~v~viD-~t~~~~~~~i~------------- 165 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA---DLLFFQFAAGPAVGLVV-QGGSSDDQLLS------------- 165 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCC---EEEEEecCCCCeEEEEE-CCCCEEeEEcC-------------
Confidence 99999888887654 3456889999875 344444 3 57899999 88765422011
Q ss_pred CCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeec----cCccc-eEEEEEeeCCCEEEEeeCCC
Q 008844 165 NKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPV----SGAAV-IKNIVFSRNGQYLLTNSNDR 238 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~----~~~~~-i~~l~~s~~g~~l~t~s~Dg 238 (551)
...++.+.+.+ +.+++.+.+|.+.++|. +++....... ....+ .....+.+++..++..+..+
T Consensus 166 ----------~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 234 (373)
T 2mad_H 166 ----------SPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG 234 (373)
T ss_pred ----------CCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc
Confidence 11234555666 45566778999999999 8777633210 11122 23356777766655555788
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccccc-----ccceeeeeeeEEcCCCCEEEEeecc
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQD-----SITKMHWKAPCFSGDGEWVIAGSAS 313 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~s~dg~~l~~gs~~ 313 (551)
.+.+.|+.... ...+..+..... ......+..++++|+++.|+++...
T Consensus 235 ~v~vid~~~~~---------------------------~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~ 287 (373)
T 2mad_H 235 KILQADISAAG---------------------------ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred eEEEEeccCCc---------------------------ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence 99999832110 000011100000 0000112247899999988886542
Q ss_pred C-------CcceEEEEecC-CceeEEEecCCCceEEEEEecCCC-eEEEEc-CCCcEEEEecCCCCccee
Q 008844 314 K-------GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHP-IIVSVS-LTGWVYIWAKDYTENWSA 373 (551)
Q Consensus 314 ~-------~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s-~dg~i~iW~~~~~~~~~~ 373 (551)
. ..+.|.++|.. ++.+..+.. ......++|+|+++ +|+++. .++.|.+||+.+.+....
T Consensus 288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 288 QSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 1 13679999999 888888864 34689999999999 788877 489999999998765443
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=5.1e-13 Score=129.59 Aligned_cols=197 Identities=9% Similarity=0.061 Sum_probs=137.2
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC----CCEEEEEcC
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD----KSLTLWDVL 97 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d----g~i~vwd~~ 97 (551)
+...+.+++|+++|++++++..++.|.+||..+++....+..+ ...+.+++|+++|+++++...+ +.|.+||..
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH--KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS--SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC--CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence 3355789999999998888888999999999988766544333 6789999999999987777666 689999988
Q ss_pred CCeEEEEEE---cCCCeeEEEEecCCCCCcEEEEeeC------CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCC
Q 008844 98 KGEKITRIV---LQQTPLQARLHPGSSTPSLCLACPL------SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 98 ~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
++.....+. ....+..+.+.|++. ++++... .+.+..++..++....+....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~---l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------------- 181 (333)
T 2dg1_A 121 GDNLQDIIEDLSTAYCIDDMVFDSKGG---FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI---------------- 181 (333)
T ss_dssp SCSCEEEECSSSSCCCEEEEEECTTSC---EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE----------------
T ss_pred CCEEEEEEccCccCCcccceEECCCCC---EEEEeccccccCCCceEEEEeCCCCEEEEeecCC----------------
Confidence 776543332 123467788888753 4444432 245556665554443321110
Q ss_pred CCCCCCCceEEEEeeCCCEEEEE-ecCceEEEEECCC-CcEEEee------eccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 169 DGTPPFTPTAACFNKYGDLVYVG-NSKGEILVIDHKS-NQIRALV------PVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g~~l~~g-~~dg~i~i~d~~~-~~~~~~~------~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
..+..++|+|+|+.|+++ +.++.|.+||+.+ +..+..+ .......+..++++++|+++++...++.|
T Consensus 182 -----~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 182 -----SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp -----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred -----CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 056789999999866555 5578999999964 3322111 11112467889999999988887778999
Q ss_pred EEEe
Q 008844 241 RIYD 244 (551)
Q Consensus 241 ~iwd 244 (551)
.+|+
T Consensus 257 ~~~d 260 (333)
T 2dg1_A 257 LVFN 260 (333)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9998
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=2.7e-13 Score=131.18 Aligned_cols=263 Identities=14% Similarity=0.105 Sum_probs=177.4
Q ss_pred CCCeEEEEeccCCceeeEeec----ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEec
Q 008844 43 SDGSCVIWDFETRGIAKELRD----KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHP 118 (551)
Q Consensus 43 ~dg~I~iwd~~~~~~~~~~~~----~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p 118 (551)
.+++|.+||..+++....+.. .........+.+. +++++++...++.|.+||..+++.+..+.....+..+.+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~ 93 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS 93 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence 378999999999987665421 1112446778775 34555555567999999999999999987777888999988
Q ss_pred CCCCCcEEEEeeCCCCcEEEEcCCCceeee-ccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe--cCc
Q 008844 119 GSSTPSLCLACPLSSAPMIVDLSTGSTSIL-PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN--SKG 195 (551)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~--~dg 195 (551)
++ .++++...++.+.+||..+++.... ...... .....+..+++ ++..++++. .++
T Consensus 94 ~g---~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~----------------~~~~~p~~i~~--~~~~lyv~~~~~~~ 152 (328)
T 3dsm_A 94 DE---KAYVTQIWDYRIFIINPKTYEITGYIECPDMD----------------MESGSTEQMVQ--YGKYVYVNCWSYQN 152 (328)
T ss_dssp TT---EEEEEEBSCSEEEEEETTTTEEEEEEECTTCC----------------TTTCBCCCEEE--ETTEEEEEECTTCC
T ss_pred CC---eEEEEECCCCeEEEEECCCCeEEEEEEcCCcc----------------ccCCCcceEEE--ECCEEEEEcCCCCC
Confidence 75 2555554789999999998875532 111100 00013445666 344555555 488
Q ss_pred eEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC----------CeEEEEeCcCCccccchhhhhhhccCCC
Q 008844 196 EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND----------RTIRIYDNLLPLKNGLEALVDIEKGIAE 265 (551)
Q Consensus 196 ~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (551)
.|.+||+.+++.+..+.. ......++++|+|++++++..+ +.|.+||..
T Consensus 153 ~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~------------------- 211 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE------------------- 211 (328)
T ss_dssp EEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT-------------------
T ss_pred EEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC-------------------
Confidence 999999999998887753 3345688999999977776654 789999921
Q ss_pred CCcceeeeeccceeeeeeccc-ccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeE--EEecCCCceEE
Q 008844 266 PNGIEKMKMVGSKCLALFREF-QDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVK--ILEGPKEALID 341 (551)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~--~l~~h~~~v~~ 341 (551)
+......+... ..... .++|+|++++|+++.. .|++||.. ++... .+..+......
T Consensus 212 ----------t~~v~~~~~~~~g~~p~-----~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~~~~~~p~g 271 (328)
T 3dsm_A 212 ----------TFTVEKQFKFKLGDWPS-----EVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLEFRDTKYYG 271 (328)
T ss_dssp ----------TTEEEEEEECCTTCCCE-----EEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBCCCSSCEEE
T ss_pred ----------CCeEEEEEecCCCCCce-----eEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeecCCCCceEE
Confidence 11222222111 11222 8899999999988652 79999998 65432 12222456889
Q ss_pred EEEecC-CCeEEEE----cCCCcEEEEecCCCC
Q 008844 342 LAWHPV-HPIIVSV----SLTGWVYIWAKDYTE 369 (551)
Q Consensus 342 l~~sp~-~~~l~s~----s~dg~i~iW~~~~~~ 369 (551)
++++|+ +.++++. ..++.|.+|+.. ++
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 999994 5555555 568899999987 44
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=2.6e-12 Score=122.36 Aligned_cols=275 Identities=9% Similarity=0.004 Sum_probs=185.5
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
...+.++++.++|+++++...++.|.+|+.. ++... +....+...+.+|++.++|+++++...++.|..||.. ++.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~- 94 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF- 94 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence 3578999999999988887778999999988 55443 3222224678999999999877776667889999987 654
Q ss_pred EEEEc---CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 103 TRIVL---QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 103 ~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
..+.. ...+..+.+.+++ .++++....+.+..++.. +......... ....+..+
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-------------------~~~~~~~i 151 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNG---DIWFTQLNGDRIGKLTAD-GTIYEYDLPN-------------------KGSYPAFI 151 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTT---CEEEEETTTTEEEEECTT-SCEEEEECSS-------------------TTCCEEEE
T ss_pred EEecCCCCCCCCccceECCCC---CEEEEccCCCeEEEECCC-CCEEEccCCC-------------------CCCCceeE
Confidence 33333 2456777777754 366666667888888887 5443322110 01167899
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
++.++|+++++....+.|..|+. +++........+...+.+++++++|.++++....+.|.+|+. .
T Consensus 152 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~------------ 217 (300)
T 2qc5_A 152 TLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-T------------ 217 (300)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T------------
T ss_pred EECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-C------------
Confidence 99999996666666789999998 565544221133457889999999987777666788999982 1
Q ss_pred hccCCCCCcceeeeeccceeee-eecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEE-EecCCC
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLA-LFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKI-LEGPKE 337 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~-l~~h~~ 337 (551)
..... ........+ ..++++++|++.++... ++.|.+|+..+..... +.....
T Consensus 218 -----------------g~~~~~~~~~~~~~~-----~~i~~d~~g~l~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~ 272 (300)
T 2qc5_A 218 -----------------GEISEYDIPTPNARP-----HAITAGKNSEIWFTEWG---ANQIGRITNDNTIQEYQLQTENA 272 (300)
T ss_dssp -----------------CCEEEEECSSTTCCE-----EEEEECSTTCEEEEETT---TTEEEEECTTSCEEEEECCSTTC
T ss_pred -----------------CcEEEEECCCCCCCc-----eEEEECCCCCEEEeccC---CCeEEEECCCCcEEEEECCccCC
Confidence 00000 011111122 27899999986666655 6889999987543322 333446
Q ss_pred ceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 338 ALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
.+.++++.+++.++++.. . .|..++.
T Consensus 273 ~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 273 EPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 689999999998666655 4 6666654
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.8e-13 Score=147.19 Aligned_cols=243 Identities=14% Similarity=0.084 Sum_probs=158.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCC-----eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCC--------
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDG-----SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKS-------- 90 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg-----~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~-------- 90 (551)
..+..++|||||++||.+..++ .|++||+.+++.+..... ...+.+++|+|||+.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc---CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 4688999999999999876543 899999999987664332 233678999999999999988766
Q ss_pred --------EEEEEcCCCeE--EEEEEcC---CCeeEEEEecCCCCCcEEEEeeC----CCCcEEEEcCC------Cc--e
Q 008844 91 --------LTLWDVLKGEK--ITRIVLQ---QTPLQARLHPGSSTPSLCLACPL----SSAPMIVDLST------GS--T 145 (551)
Q Consensus 91 --------i~vwd~~~~~~--~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~----~~~i~i~d~~~------~~--~ 145 (551)
|.+|++.++.. ...+... .....+.|+|++.. ++++... +..+++||+.+ +. .
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988762 2222322 22568899998752 3333321 56788999876 42 2
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC----ceEEEEECCCCcE---EEeeeccCc--
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK----GEILVIDHKSNQI---RALVPVSGA-- 216 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d----g~i~i~d~~~~~~---~~~~~~~~~-- 216 (551)
..+... ...+. ..|+++|..|+..+.. +.|.+||+.++.. ...+ .+.
T Consensus 280 ~~l~~~---------------------~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~ 335 (710)
T 2xdw_A 280 VKLIDN---------------------FEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PEHEK 335 (710)
T ss_dssp EEEECS---------------------SSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSS
T ss_pred EEeeCC---------------------CCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--CCCCC
Confidence 211100 00222 3588999888776653 4699999988742 3333 333
Q ss_pred cceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeee
Q 008844 217 AVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWK 296 (551)
Q Consensus 217 ~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 296 (551)
..+..++|++++.++++...++..+||-+. ...+..+..+..+...+.
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~---------------------------~~~g~~~~~l~~~~~~v~----- 383 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHD---------------------------LATGALLKIFPLEVGSVV----- 383 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEE---------------------------TTTCCEEEEECCCSSEEE-----
T ss_pred CeEEEEEEEcCCEEEEEEEECCEEEEEEEE---------------------------CCCCCEEEecCCCCceEE-----
Confidence 368889999777788888888876555310 111222333333333343
Q ss_pred eeEEcCCCCEEEEeec-cCCcceEEEEecC-Cc
Q 008844 297 APCFSGDGEWVIAGSA-SKGEHKIYIWDRA-GY 327 (551)
Q Consensus 297 ~~~~s~dg~~l~~gs~-~~~dg~I~iwd~~-~~ 327 (551)
.++++|++..|+.... ....+.|++||+. ++
T Consensus 384 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 384 GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6788999876664422 1225789999998 66
No 193
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.60 E-value=7.4e-13 Score=125.47 Aligned_cols=219 Identities=14% Similarity=0.198 Sum_probs=147.9
Q ss_pred ccccccCCCCccceeecc----cccceEEEEEE-cCCCCEEEEEeC-CCeEEEEeccCCceeeEeecccccccEEEEEec
Q 008844 3 APIIDPLQGDFPEVIEEY----LEHGVMKCIAF-NRRGTLLAAGCS-DGSCVIWDFETRGIAKELRDKECVAAITSVCWS 76 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~----~h~~~V~~l~f-s~dg~~latg~~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s 76 (551)
|.+||+. +.....+... .+...+.++++ .++|+++++... ++.|.+|+ .+++.+..+... +...+.+|+++
T Consensus 53 i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~-~~~~~~~i~~~ 129 (286)
T 1q7f_A 53 IQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGAT-ILQHPRGVTVD 129 (286)
T ss_dssp EEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTT-TCSCEEEEEEC
T ss_pred EEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCc-cCCCceEEEEe
Confidence 5677765 4333333211 12346889999 578877776643 78999999 557766666432 34678999999
Q ss_pred CCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCC
Q 008844 77 KYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVA 156 (551)
Q Consensus 77 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 156 (551)
++|+++++...++.|.+|+. ++..+..+.....
T Consensus 130 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~---------------------------------------------- 162 (286)
T 1q7f_A 130 NKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKH---------------------------------------------- 162 (286)
T ss_dssp TTSCEEEEETTTTEEEEECT-TSCEEEEEECTTT----------------------------------------------
T ss_pred CCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCc----------------------------------------------
Confidence 99998887777889999995 4554444321100
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEeeCCCEEEEee
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~t~s 235 (551)
...+..++++++|+++++...++.|.+||.. ++.+..+.. .+...+..|+++++|+++++..
T Consensus 163 ----------------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 163 ----------------LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADN 225 (286)
T ss_dssp ----------------CSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred ----------------cCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeC
Confidence 0157889999999877777789999999974 455555531 1235789999999999888887
Q ss_pred CCC-eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccC
Q 008844 236 NDR-TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASK 314 (551)
Q Consensus 236 ~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~ 314 (551)
.++ .|.+|+. . +..+..+..+.... ....++++|+|+++++ +.
T Consensus 226 ~~~~~i~~~~~-~-----------------------------g~~~~~~~~~~~~~---~~~~i~~~~~g~l~vs-~~-- 269 (286)
T 1q7f_A 226 HNNFNLTIFTQ-D-----------------------------GQLISALESKVKHA---QCFDVALMDDGSVVLA-SK-- 269 (286)
T ss_dssp SSSCEEEEECT-T-----------------------------SCEEEEEEESSCCS---CEEEEEEETTTEEEEE-ET--
T ss_pred CCCEEEEEECC-C-----------------------------CCEEEEEcccCCCC---cceeEEECCCCcEEEE-CC--
Confidence 776 9999981 1 12222232221111 1127899999987766 56
Q ss_pred CcceEEEEecC
Q 008844 315 GEHKIYIWDRA 325 (551)
Q Consensus 315 ~dg~I~iwd~~ 325 (551)
++.|++|++.
T Consensus 270 -~~~v~v~~~~ 279 (286)
T 1q7f_A 270 -DYRLYIYRYV 279 (286)
T ss_dssp -TTEEEEEECS
T ss_pred -CCeEEEEEcc
Confidence 7999999986
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=2e-13 Score=147.44 Aligned_cols=279 Identities=14% Similarity=0.084 Sum_probs=168.2
Q ss_pred cCCCCEEEEEeCCCe---EEEEecc-----CCceeeEee----cccccccEEEEEecCCCCEEEEEeCC-----CCEEEE
Q 008844 32 NRRGTLLAAGCSDGS---CVIWDFE-----TRGIAKELR----DKECVAAITSVCWSKYGHRILVSAAD-----KSLTLW 94 (551)
Q Consensus 32 s~dg~~latg~~dg~---I~iwd~~-----~~~~~~~~~----~~~h~~~V~~l~~s~~g~~l~s~s~d-----g~i~vw 94 (551)
+|+|++++....++. -.||-.. .+.....+. ..+|...+..++|||||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489998887665432 4555443 333322221 12234578899999999999887653 369999
Q ss_pred EcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC--------------CcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 95 DVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS--------------APMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
|+.+|+.+...........+.|+|+ . .++.+..+. .|++|++.++......+..
T Consensus 195 dl~tg~~~~~~~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~-------- 262 (741)
T 1yr2_A 195 GVADGKPLADELKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA-------- 262 (741)
T ss_dssp ETTTCCEEEEEEEEEESCCCEESTT-S---EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC--------
T ss_pred ECCCCCCCCccCCCceeccEEEECC-C---EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec--------
Confidence 9999987654221112246789987 4 344444433 3778888766521111100
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc-----eEEEEECCCC--c-EEEeeeccCccceEEEEEeeCCCEEE
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG-----EILVIDHKSN--Q-IRALVPVSGAAVIKNIVFSRNGQYLL 232 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg-----~i~i~d~~~~--~-~~~~~~~~~~~~i~~l~~s~~g~~l~ 232 (551)
...++..+..+.|+|+|++|+..+.++ .|++||+.++ . ..... .+...+... ++|+|..|+
T Consensus 263 --------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~-~~~dg~~l~ 331 (741)
T 1yr2_A 263 --------TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI--PDLKAQWDF-VDGVGDQLW 331 (741)
T ss_dssp --------CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE--CSSSSCEEE-EEEETTEEE
T ss_pred --------cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec--CCCCceEEE-EeccCCEEE
Confidence 001111467899999999988877544 8999999887 4 33333 344444444 348999888
Q ss_pred EeeCC----CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEE
Q 008844 233 TNSND----RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVI 308 (551)
Q Consensus 233 t~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~ 308 (551)
..+.+ +.|.+|++..+. ......+..+...+. .++++ ++.+++
T Consensus 332 ~~s~~~~~~~~l~~~d~~~~~---------------------------~~~~~l~~~~~~~l~-----~~~~~-~~~lv~ 378 (741)
T 1yr2_A 332 FVSGDGAPLKKIVRVDLSGST---------------------------PRFDTVVPESKDNLE-----SVGIA-GNRLFA 378 (741)
T ss_dssp EEECTTCTTCEEEEEECSSSS---------------------------CEEEEEECCCSSEEE-----EEEEE-BTEEEE
T ss_pred EEECCCCCCCEEEEEeCCCCc---------------------------cccEEEecCCCCeEE-----EEEEE-CCEEEE
Confidence 77653 458888821110 011222222222222 45666 556667
Q ss_pred EeeccCCcceEEEEec--CCceeEEEecC-CCceEEEEEecCCCeEEEE----cCCCcEEEEecCCCC
Q 008844 309 AGSASKGEHKIYIWDR--AGYLVKILEGP-KEALIDLAWHPVHPIIVSV----SLTGWVYIWAKDYTE 369 (551)
Q Consensus 309 ~gs~~~~dg~I~iwd~--~~~~~~~l~~h-~~~v~~l~~sp~~~~l~s~----s~dg~i~iW~~~~~~ 369 (551)
+... ++..+||.+ .+..+..+..+ ...+..++++|++..|+.. ...++|++|++.+++
T Consensus 379 ~~~~---dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 379 SYIH---DAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEE---TTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEE---CCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7766 666555544 47677777654 5678999999998855522 235789999998765
No 195
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.60 E-value=1.8e-13 Score=132.57 Aligned_cols=231 Identities=11% Similarity=0.111 Sum_probs=155.1
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeEeec-------ccccccEEEE
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG-IAKELRD-------KECVAAITSV 73 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~-~~~~~~~-------~~h~~~V~~l 73 (551)
.|.+||+.++++...+.. .+-..+..|+|+++|+++++...++.|++|+..... .+..+.. ..+-.....|
T Consensus 70 ~i~~~d~~~g~~~~~~~~-~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGK-NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CEEEECTTTCCEEEEECT-TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred cEEEEECCCCeEEeccCC-CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 377889888876544331 123568899999999999988889999999986542 4555531 1234578999
Q ss_pred EecC-CCCEEEEEe-CCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccc
Q 008844 74 CWSK-YGHRILVSA-ADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIA 151 (551)
Q Consensus 74 ~~s~-~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 151 (551)
+|+| ++.++++.+ .++.|++|+ .+|..+..+...... ..
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~-------~~------------------------------- 189 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG-------SS------------------------------- 189 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS-------SS-------------------------------
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC-------CC-------------------------------
Confidence 9999 788888776 589999999 566665544211100 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC-CCEEEEEecCceEEEEECCCCcEEEeeec-cCccceEEEEEee---
Q 008844 152 VPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY-GDLVYVGNSKGEILVIDHKSNQIRALVPV-SGAAVIKNIVFSR--- 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~s~--- 226 (551)
.....-..+..++++|+ +.++++...++.|.+|+..+++.+..+.. .+...+..++|+|
T Consensus 190 ----------------~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~ 253 (329)
T 3fvz_A 190 ----------------PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFL 253 (329)
T ss_dssp ----------------CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred ----------------CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEE
Confidence 00000015789999998 67677777889999999998888777742 3456788999998
Q ss_pred ---CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec---ccccccceeeeeeeEE
Q 008844 227 ---NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR---EFQDSITKMHWKAPCF 300 (551)
Q Consensus 227 ---~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~ 300 (551)
+|+.+++...+..|++|+.. .+..+..+. .+..... .+++
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~-----------------------------~g~~~~~~~~~~~~~~~p~-----~ia~ 299 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFS-----------------------------SGEIIDVFKPVRKHFDMPH-----DIVA 299 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETT-----------------------------TCCEEEEECCSSSCCSSEE-----EEEE
T ss_pred EEeCCCEEeccCCCcEEEEEEcC-----------------------------CCeEEEEEcCCCCccCCee-----EEEE
Confidence 34333333445689999821 122333331 2222222 8899
Q ss_pred cCCCCEEEEeeccCCcceEEEEecC
Q 008844 301 SGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 301 s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
+|+|.++++... ++.|++|++.
T Consensus 300 ~~dG~lyvad~~---~~~I~~~~~~ 321 (329)
T 3fvz_A 300 SEDGTVYIGDAH---TNTVWKFTLT 321 (329)
T ss_dssp CTTSEEEEEESS---SCCEEEEEEE
T ss_pred CCCCCEEEEECC---CCEEEEEeCC
Confidence 999977777666 7899999987
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=1.3e-12 Score=126.47 Aligned_cols=286 Identities=13% Similarity=0.091 Sum_probs=189.4
Q ss_pred EEEcCCCCEEEEEeC-----CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe----------CCCCEEE
Q 008844 29 IAFNRRGTLLAAGCS-----DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA----------ADKSLTL 93 (551)
Q Consensus 29 l~fs~dg~~latg~~-----dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s----------~dg~i~v 93 (551)
....|+++.|++... ++.|.++|..+++.+..+... ..+ . +.++|+|++|++++ .++.|.+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 456789998888865 579999999999999988754 344 4 99999999988876 3678999
Q ss_pred EEcCCCeEEEEEEcCC--------CeeEEEEecCCCCCcEEEEee-CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCC
Q 008844 94 WDVLKGEKITRIVLQQ--------TPLQARLHPGSSTPSLCLACP-LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSR 164 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (551)
||..+++.+..+.... .+..+.++|++.. ++++.. .++.+.++|+.+++...... .
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~vv~tI~-v------------ 178 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAFKRMLD-V------------ 178 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE-C------------
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcEEEEEE-C------------
Confidence 9999999999887543 5778999998752 344443 36889999999988653210 0
Q ss_pred CCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCC-CcEEEeee-c--cCccceE-EEEEe-eCCCEEEEeeCCC
Q 008844 165 NKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKS-NQIRALVP-V--SGAAVIK-NIVFS-RNGQYLLTNSNDR 238 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~-~--~~~~~i~-~l~~s-~~g~~l~t~s~Dg 238 (551)
.-....+....+.+++.+.||.+.++++.+ ++...... . ....++. ...|. ++|++++ .+.+|
T Consensus 179 ----------~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g 247 (386)
T 3sjl_D 179 ----------PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTG 247 (386)
T ss_dssp ----------CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTS
T ss_pred ----------CCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCC
Confidence 001223333346677778888888888876 55432211 0 1112222 24665 5776555 55689
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec-----ccccccceeeeeeeEEcCCCCEEEEeecc
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR-----EFQDSITKMHWKAPCFSGDGEWVIAGSAS 313 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~s~dg~~l~~gs~~ 313 (551)
.|.++|..... ...+..+. ..........+..++++++++.|+.....
T Consensus 248 ~V~v~d~~~~~---------------------------~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 248 KIHQIDLSSGD---------------------------AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp EEEEEECTTSS---------------------------CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCc---------------------------ceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 99999932110 00011110 00001111122257889999988887531
Q ss_pred C-------CcceEEEEecC-CceeEEEecCCCceEEEEEecCCC-eEEEE-cCCCcEEEEecCCCCcce
Q 008844 314 K-------GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHP-IIVSV-SLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 314 ~-------~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~-s~dg~i~iW~~~~~~~~~ 372 (551)
+ ..+.|.++|+. ++.+..+... ..+..|+++|+++ +|+++ ..++.|.++|..+.+...
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 0 13679999999 8888887643 4688999999996 66664 459999999999876543
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=9.3e-13 Score=127.60 Aligned_cols=282 Identities=16% Similarity=0.135 Sum_probs=182.5
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEe----------CCCeEEEEeccCCceeeEeeccc-----cc
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGC----------SDGSCVIWDFETRGIAKELRDKE-----CV 67 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~----------~dg~I~iwd~~~~~~~~~~~~~~-----h~ 67 (551)
|.++|+.+++....+.. ...+ . ++++|||++|+++. .++.|.+||..+++.+..+.... ..
T Consensus 61 V~ViD~~t~~v~~~I~v--G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g 136 (386)
T 3sjl_D 61 QFVIDGEAGRVIGMIDG--GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG 136 (386)
T ss_dssp EEEEETTTTEEEEEEEE--CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred EEEEECCCCeEEEEEEC--CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccC
Confidence 56778888876666654 2333 4 99999999888775 35789999999999988875421 01
Q ss_pred ccEEEEEecCCCCEEEEEeC--CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC-Cc
Q 008844 68 AAITSVCWSKYGHRILVSAA--DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST-GS 144 (551)
Q Consensus 68 ~~V~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~-~~ 144 (551)
.....+.|+|||++|+++.. ++.|.++|+.+++.+.++..... ..+.|.+ ...+++.+.||.+.++++.. +.
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g--~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTA--PDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEE--TTEEEEEETTSCEEEEECCSSSC
T ss_pred CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCC--CceeEEECCCCCEEEEECCCCCe
Confidence 24567899999999998874 68999999999999999976542 2233433 33667888899999999976 55
Q ss_pred eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe-eCCCEEEEEecCceEEEEECCCCcE--EEeeec--------
Q 008844 145 TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN-KYGDLVYVGNSKGEILVIDHKSNQI--RALVPV-------- 213 (551)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~-------- 213 (551)
........ ....... ......|. ++|++++ .+.+|.|+++|+.+... ...+..
T Consensus 212 v~~~~~~~------~~~~~~~---------~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~ 275 (386)
T 3sjl_D 212 PEITHTEV------FHPEDEF---------LINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD 275 (386)
T ss_dssp CEEEECCC------CSCTTSC---------BCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred EEEeecce------ecccccc---------ccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccc
Confidence 42111000 0000000 11123554 6676555 55589999999987653 222210
Q ss_pred -cCccceEEEEEeeCCCEEEEeeC----------CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee
Q 008844 214 -SGAAVIKNIVFSRNGQYLLTNSN----------DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL 282 (551)
Q Consensus 214 -~~~~~i~~l~~s~~g~~l~t~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (551)
-....+..++++++++.|++... .+.|.++|+ .+.+.+..
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~-----------------------------~t~kv~~~ 326 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA-----------------------------KTGERLAK 326 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET-----------------------------TTCCEEEE
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC-----------------------------CCCeEEEE
Confidence 01223345778999888877643 246888882 12233333
Q ss_pred ecccccccceeeeeeeEEcCCCC-EEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecC
Q 008844 283 FREFQDSITKMHWKAPCFSGDGE-WVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPV 347 (551)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~s~dg~-~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~ 347 (551)
+..- ..+. .++|++|++ +|+++... ++.|.++|.. ++.+..+... +..+.|.+++|
T Consensus 327 i~vg-~~~~-----~lavs~D~~~~ly~tn~~--~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 327 FEMG-HEID-----SINVSQDEKPLLYALSTG--DKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEE-EEEC-----EEEECSSSSCEEEEEETT--TTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EECC-CCcc-----eEEECCCCCeEEEEEcCC--CCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 3211 1222 889999997 66665432 6899999999 9999988753 44456666665
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.59 E-value=6.2e-12 Score=123.44 Aligned_cols=269 Identities=11% Similarity=0.035 Sum_probs=173.9
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEe----------CCCeEEEEeccCCceeeEeecc--c---c
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGC----------SDGSCVIWDFETRGIAKELRDK--E---C 66 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~----------~dg~I~iwd~~~~~~~~~~~~~--~---h 66 (551)
.|.++|+.+++....+.. ...+ .++|||||++|+++. .++.|.+||..+.+.+..+... . +
T Consensus 48 ~v~v~D~~t~~~~~~i~~--g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNG--GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCCeEEEEecC--CCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 457889988876555443 2233 899999999999886 3678999999998888776532 0 0
Q ss_pred cccEEEEEecCCCCEEEEEeC--CCCEEEEEcCCCeEEEE-EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 67 VAAITSVCWSKYGHRILVSAA--DKSLTLWDVLKGEKITR-IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
......+.|+|+|++|++++. ++.|.++| .+++.+.. +..... +.+.|.+. ..+++.+.++.+.+++. ++
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~--~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAP--STFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCC--ceEEEEcCCCCEEEEEC-CC
Confidence 123458999999999999875 47899999 99988877 654332 44556543 35677888999999999 77
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE--EEeeecc-------
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI--RALVPVS------- 214 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~------- 214 (551)
+.......... . ....+ ......+.+++..++..+..+.+.++|+.+... +..+...
T Consensus 197 ~~~~~~~~~~~------------~-~~~~p-~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~ 262 (373)
T 2mad_H 197 GAAGAGLVGAM------------L-TAAQN-LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD 262 (373)
T ss_pred cEEEEEecccc------------c-cCCcc-eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence 65422100000 0 00000 112345667765555555788999999976532 2222110
Q ss_pred --CccceEEEEEeeCCCEEEEeeC----------CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee
Q 008844 215 --GAAVIKNIVFSRNGQYLLTNSN----------DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL 282 (551)
Q Consensus 215 --~~~~i~~l~~s~~g~~l~t~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (551)
.......++++|+++.|++... .+.|.++|. .+.+.+..
T Consensus 263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~-----------------------------~t~~vv~~ 313 (373)
T 2mad_H 263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG-----------------------------LVGQTSSQ 313 (373)
T ss_pred ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC-----------------------------CCCEEEEE
Confidence 1223445788999888777643 357888882 12233333
Q ss_pred ecccccccceeeeeeeEEcCCCC-EEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 283 FREFQDSITKMHWKAPCFSGDGE-WVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~s~dg~-~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
+.. ..... .++|+|||+ +++++... ++.|.+||.. ++.+..+
T Consensus 314 i~~-g~~p~-----~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 314 ISL-GHDVD-----AISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEC-CCCcC-----eEEECCCCCeEEEEEcCC--CCeEEEEECCCCCEEeee
Confidence 321 11222 889999999 66666521 7899999999 8888774
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=3.5e-12 Score=125.90 Aligned_cols=283 Identities=12% Similarity=0.077 Sum_probs=188.8
Q ss_pred CCCCEEEEEeCC-----CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe----------CCCCEEEEEcC
Q 008844 33 RRGTLLAAGCSD-----GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA----------ADKSLTLWDVL 97 (551)
Q Consensus 33 ~dg~~latg~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s----------~dg~i~vwd~~ 97 (551)
++++.+++.... +.|.++|..+++.+..+... ..+ .+.++|||++|+++. .++.|.++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 567766666542 69999999999999999764 445 899999999988886 36789999999
Q ss_pred CCeEEEEEEcC--------CCeeEEEEecCCCCCcEEEEee-C-CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCC
Q 008844 98 KGEKITRIVLQ--------QTPLQARLHPGSSTPSLCLACP-L-SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKY 167 (551)
Q Consensus 98 ~~~~~~~~~~~--------~~~~~~~~~p~~~~~~~~~~~~-~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (551)
+++.+..+... ..+..+.++|++. .++++. . .+.+.++|+.+++..... ...
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk---~lyV~n~~~~~~VsVID~~t~kvv~~I-~v~-------------- 219 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNK---NLLFYQFSPAPAVGVVDLEGKTFDRML-DVP-------------- 219 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEE-ECC--------------
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCC---EEEEEecCCCCeEEEEECCCCeEEEEE-EcC--------------
Confidence 99999988754 3467889999875 344443 3 678999999998765321 110
Q ss_pred CCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEe----eeccCccceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 168 SDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRAL----VPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 168 ~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~----~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
. +....|++ ..+++.+.+|.+.+.++.+++.... +..........+.|.+++..++..+..+.|.+
T Consensus 220 -------g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~V 290 (426)
T 3c75_H 220 -------D--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQ 290 (426)
T ss_dssp -------S--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEE
T ss_pred -------C--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEE
Confidence 1 12233443 5566667788888888766655422 11111111123567899888777778899999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc---ccccc--ceeeeeeeEEcCCCCEEEEeeccC---
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE---FQDSI--TKMHWKAPCFSGDGEWVIAGSASK--- 314 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v--~~~~~~~~~~s~dg~~l~~gs~~~--- 314 (551)
.|..... ...+..+.. ....+ ....+..++|+|+++.+++...+.
T Consensus 291 iD~~~~~---------------------------~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 291 ADLTAEG---------------------------ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp EEECSSC---------------------------EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred EeccCCc---------------------------eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence 9921110 000000000 00000 001111478999999887765311
Q ss_pred ----CcceEEEEecC-CceeEEEecCCCceEEEEEecCCC-eEEEEc-CCCcEEEEecCCCCcceee
Q 008844 315 ----GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHP-IIVSVS-LTGWVYIWAKDYTENWSAF 374 (551)
Q Consensus 315 ----~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s-~dg~i~iW~~~~~~~~~~~ 374 (551)
+.+.|.++|.. .+.+..+... .....|+|+|+++ +|+++. .++.|.|+|+.+.+....+
T Consensus 344 thk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 14689999999 8888888643 3588999999999 888887 4999999999987755444
No 200
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.54 E-value=1.9e-12 Score=127.80 Aligned_cols=270 Identities=12% Similarity=0.056 Sum_probs=181.4
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEe----------CCCeEEEEeccCCceeeEeecc--c---c
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGC----------SDGSCVIWDFETRGIAKELRDK--E---C 66 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~----------~dg~I~iwd~~~~~~~~~~~~~--~---h 66 (551)
.|.++|+.+++....+.. ...+ .++|+|||++|+++. .++.|.++|..+++.+..+... . .
T Consensus 100 ~VsVID~~t~~vv~~I~v--G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDG--GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEETTTTEEEEEEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred eEEEEECCCCEEEEEEEC--CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 367888888877766654 2234 799999999888876 3678999999999998887531 0 0
Q ss_pred cccEEEEEecCCCCEEEEEeC--CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCc
Q 008844 67 VAAITSVCWSKYGHRILVSAA--DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGS 144 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~ 144 (551)
......+.|+|||++|+++.. ++.|.+.|+.+++.+..+..... ....|.+. ..+++.+.++.+.++++..++
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~--~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASP--TVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET--TEEEEEETTSSEEEEECCTTC
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCC--cEEEEEcCCCCEEEEECCCCc
Confidence 123457899999999999874 57899999999999998886542 33445443 467788889999999996555
Q ss_pred eeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEE--eeecc--------
Q 008844 145 TSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRA--LVPVS-------- 214 (551)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~-------- 214 (551)
.......... .. ..+ ....+.|.+++..++..+..|.|.+.|+....... .+...
T Consensus 251 v~~~~~~~~~------v~--------~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 251 TKVTNTEVFH------TE--------DEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp CEEEECCCCS------CT--------TSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred EEEEeeeeec------cC--------CCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 4421100000 00 000 11235678888888877888999999997665321 11100
Q ss_pred -CccceEEEEEeeCCCEEEEeeC----------CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee
Q 008844 215 -GAAVIKNIVFSRNGQYLLTNSN----------DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF 283 (551)
Q Consensus 215 -~~~~i~~l~~s~~g~~l~t~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (551)
.......++++|+++.|++... .+.|.++|.. ..+.+..+
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~-----------------------------T~kvv~~I 366 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE-----------------------------TGERINKI 366 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT-----------------------------TCCEEEEE
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC-----------------------------CCeEEEEE
Confidence 0111223789999887776642 3579999921 12223333
Q ss_pred cccccccceeeeeeeEEcCCCC-EEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 284 REFQDSITKMHWKAPCFSGDGE-WVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 284 ~~~~~~v~~~~~~~~~~s~dg~-~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
..-. .+| .+.|+|||+ ++++.... ++.|.|+|+. ++.+..+
T Consensus 367 ~vg~-----~P~-gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 367 ELGH-----EID-SINVSQDAEPLLYALSAG--TQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEE-----EEC-EEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEEEE
T ss_pred ECCC-----CcC-eEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEEEe
Confidence 2111 122 889999999 88887742 7999999999 8888887
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=5.5e-12 Score=125.60 Aligned_cols=253 Identities=12% Similarity=0.055 Sum_probs=160.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC--CEEEEEcCCCeE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK--SLTLWDVLKGEK 101 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg--~i~vwd~~~~~~ 101 (551)
.....|+|+++|+++++...++.|++||..++.+....... .... ++|++++++|+++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 35789999999998888877899999999987766555432 2233 99999999999988765 688888765443
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
...+... .+. ....+.++++
T Consensus 207 ~~~~g~~--------~~~----------------------------------------------------~~~~p~~iav 226 (409)
T 3hrp_A 207 PTRIGQL--------GST----------------------------------------------------FSGKIGAVAL 226 (409)
T ss_dssp EEEEEEC--------CTT----------------------------------------------------SCSCCCBCEE
T ss_pred eEEeeec--------cch----------------------------------------------------hcCCcEEEEE
Confidence 2222000 000 0015677899
Q ss_pred eeCCCEEEEEecCceEEEEECCCCcEEEee---eccCccc--eEEEEEeeC-CCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 182 NKYGDLVYVGNSKGEILVIDHKSNQIRALV---PVSGAAV--IKNIVFSRN-GQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 182 s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~---~~~~~~~--i~~l~~s~~-g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
+|++..|+++..++.|+.||..++...... ...+... ...++|+|+ +.++++....+.|+.|+.. .. ...
T Consensus 227 ~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~---~~~ 302 (409)
T 3hrp_A 227 DETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD-GE---CEW 302 (409)
T ss_dssp CTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT-CC---EEE
T ss_pred eCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC-CC---EEE
Confidence 996556666777899999999887653321 1112221 238999995 5556666678899999821 10 000
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEee-ccCCcceEEEEecC-CceeEEEe
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGS-ASKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs-~~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
+.+... ..+ ...+ ......+. ....++++++|+++++-. . ++.|+.|++. |. +..+.
T Consensus 303 ---~~g~~~-~~g-----~~dg--~~~~~~~~------~P~gia~d~dG~lyvad~~~---~~~I~~~~~~~G~-v~~~~ 361 (409)
T 3hrp_A 303 ---FCGSAT-QKT-----VQDG--LREEALFA------QPNGMTVDEDGNFYIVDGFK---GYCLRKLDILDGY-VSTVA 361 (409)
T ss_dssp ---EEECTT-CCS-----CBCE--EGGGCBCS------SEEEEEECTTCCEEEEETTT---TCEEEEEETTTTE-EEEEE
T ss_pred ---EEeCCC-CCC-----cCCC--cccccEeC------CCeEEEEeCCCCEEEEeCCC---CCEEEEEECCCCE-EEEEe
Confidence 000000 000 0000 00000011 112789999999777766 6 7899999976 65 44444
Q ss_pred cC---------------CCceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 334 GP---------------KEALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 334 ~h---------------~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
++ -.....|+++|++.++++-..+++|+.+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 44 235889999999888888888888988775
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=4.7e-12 Score=118.95 Aligned_cols=188 Identities=9% Similarity=0.056 Sum_probs=143.4
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCC
Q 008844 78 YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVAN 157 (551)
Q Consensus 78 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (551)
.+++|++++.++.|.+||..+|+.+..+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----------------------------------------------- 36 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----------------------------------------------- 36 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-----------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-----------------------------------------------
Confidence 467889999999999999889998888775431
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-
Q 008844 158 GIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN- 236 (551)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~- 236 (551)
..+.++.++|+|++++ +.++.|..||. +++.+..+.......+.++.+.++|++|++.+.
T Consensus 37 ----------------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~ 97 (276)
T 3no2_A 37 ----------------WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH 97 (276)
T ss_dssp ----------------CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST
T ss_pred ----------------CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCC
Confidence 0466788889999888 45788999999 899988886443457889999999999999877
Q ss_pred CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec------ccccccceeeeeeeEEcCCCCEEEEe
Q 008844 237 DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR------EFQDSITKMHWKAPCFSGDGEWVIAG 310 (551)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~s~dg~~l~~g 310 (551)
++.|..++. . ++.+..+. .+.... ..+++.++|++|++.
T Consensus 98 ~~~v~~vd~-~-----------------------------Gk~l~~~~~~~~~~~~~~~~-----~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 98 PSTILEVNM-K-----------------------------GEVLSKTEFETGIERPHAQF-----RQINKNKKGNYLVPL 142 (276)
T ss_dssp TEEEEEECT-T-----------------------------SCEEEEEEECCSCSSGGGSC-----SCCEECTTSCEEEEE
T ss_pred CCEEEEEeC-C-----------------------------CCEEEEEeccCCCCcccccc-----cCceECCCCCEEEEe
Confidence 777777761 0 11111111 111111 256789999999998
Q ss_pred eccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 311 SASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 311 s~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
.. ++.|++||..|+.+..+..+ ..+.++.+.+++.+|++++.++.|..++..+++.
T Consensus 143 ~~---~~~v~~~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 143 FA---TSEVREIAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp TT---TTEEEEECTTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred cC---CCEEEEECCCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 88 89999999999988888765 4566788899999999988888999999986653
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=3.1e-11 Score=114.89 Aligned_cols=232 Identities=9% Similarity=0.115 Sum_probs=150.3
Q ss_pred EEEEEEcCC-CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 008844 26 MKCIAFNRR-GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 26 V~~l~fs~d-g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 104 (551)
..+..|+++ +.++++....+.|..||..++.. ..+.. ...+.+++++++|+++++ . +..|.+||..+++....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~---~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM---DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC---SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC---CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 457789985 55666667789999999987765 33322 467999999999995554 4 56799999887764332
Q ss_pred EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC
Q 008844 105 IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184 (551)
Q Consensus 105 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 184 (551)
....... ....+..++++++
T Consensus 89 ~~~~~~~------------------------------------------------------------~~~~~~di~~d~d 108 (297)
T 3g4e_A 89 ATVDNDK------------------------------------------------------------KNNRFNDGKVDPA 108 (297)
T ss_dssp EECCTTC------------------------------------------------------------SSEEEEEEEECTT
T ss_pred EecCCCC------------------------------------------------------------CCCCCCCEEECCC
Confidence 2211100 0005677888999
Q ss_pred CCEEEEEec-----------CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEE-EeeCCCeEEEEeCcCCcccc
Q 008844 185 GDLVYVGNS-----------KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLL-TNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 185 g~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-t~s~Dg~i~iwd~~~~~~~~ 252 (551)
|+++++... .+.|+.++.. ++..... .+......++|+|+++.|+ +.+.++.|.+|++ .+..+.
T Consensus 109 G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~--~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~-d~~~G~ 184 (297)
T 3g4e_A 109 GRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYF--DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY-DLQTGQ 184 (297)
T ss_dssp SCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEE--EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEE-CTTTCC
T ss_pred CCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEe--eccccccceEEcCCCCEEEEecCCCCcEEEEec-cCCCCc
Confidence 985554422 2455555553 3333322 3344568899999998765 4556789999982 110000
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEE
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKI 331 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~ 331 (551)
. ...+.+..+....... ..++++++|++.++... .+.|.+|+.. |+++..
T Consensus 185 ~---------------------~~~~~~~~~~~~~~~p-----~g~~~d~~G~lwva~~~---~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 185 I---------------------SNRRSVYKLEKEEQIP-----DGMCIDAEGKLWVACYN---GGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp E---------------------EEEEEEEECCGGGCEE-----EEEEEBTTSCEEEEEET---TTEEEEECTTTCCEEEE
T ss_pred c---------------------cCcEEEEECCCCCCCC-----CeeEECCCCCEEEEEcC---CCEEEEEcCCCceEEEE
Confidence 0 0011111222212222 27899999987777766 6889999998 999999
Q ss_pred EecCCCceEEEEEe-cCCCeEEEEcC
Q 008844 332 LEGPKEALIDLAWH-PVHPIIVSVSL 356 (551)
Q Consensus 332 l~~h~~~v~~l~~s-p~~~~l~s~s~ 356 (551)
+..+...+++++|. |++..|+.++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 99887889999998 88876655543
No 204
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=4e-12 Score=121.06 Aligned_cols=210 Identities=9% Similarity=0.026 Sum_probs=137.6
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc--cccccEEEEEecCCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK--ECVAAITSVCWSKYGH 80 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~--~h~~~V~~l~~s~~g~ 80 (551)
|.+|++.++ ...+.. +...+.+++|+++|+++++...++.|.+||..+++........ .....+..++++|+|+
T Consensus 52 i~~~~~~~~--~~~~~~--~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~ 127 (296)
T 3e5z_A 52 TWAWSDDGQ--LSPEMH--PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS 127 (296)
T ss_dssp EEEEETTSC--EEEEES--SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC
T ss_pred EEEEECCCC--eEEEEC--CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC
Confidence 456777665 333332 4567899999999998888777789999999888765443221 0123467899999999
Q ss_pred EEEEEeC-----------------CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 81 RILVSAA-----------------DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 81 ~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
++++.+. .+.|..++.. +.. ..+...
T Consensus 128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~----------------------------------- 170 (296)
T 3e5z_A 128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD----------------------------------- 170 (296)
T ss_dssp EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC-----------------------------------
T ss_pred EEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC-----------------------------------
Confidence 8887321 1233333322 221 111100
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECC-CCcE---EEeeeccCccce
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK-SNQI---RALVPVSGAAVI 219 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~-~~~~---~~~~~~~~~~~i 219 (551)
...+..++|+|+|+.+++.+.++.|.+|++. ++.. ...+ ..+...+
T Consensus 171 -----------------------------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p 220 (296)
T 3e5z_A 171 -----------------------------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKT 220 (296)
T ss_dssp -----------------------------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCC
T ss_pred -----------------------------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCC
Confidence 0056789999999988777778999999987 5554 3333 2455667
Q ss_pred EEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeE
Q 008844 220 KNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPC 299 (551)
Q Consensus 220 ~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 299 (551)
.+++++++|+++++. ++.|.+|+.. +..+..+..+.. +. +++
T Consensus 221 ~~i~~d~~G~l~v~~--~~~v~~~~~~------------------------------g~~~~~~~~~~~-~~-----~~~ 262 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA--GDGVHVLTPD------------------------------GDELGRVLTPQT-TS-----NLC 262 (296)
T ss_dssp CSEEEBTTSCEEEEE--TTEEEEECTT------------------------------SCEEEEEECSSC-CC-----EEE
T ss_pred CeEEECCCCCEEEEc--CCeEEEECCC------------------------------CCEEEEEECCCC-ce-----eEE
Confidence 789999999866655 8899999811 233444444444 44 788
Q ss_pred E-cCCCCEEEEeeccCCcceEEEEecC
Q 008844 300 F-SGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 300 ~-s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
| +|+++.|++++. + .|+-++..
T Consensus 263 f~~~d~~~L~v~t~---~-~l~~~~~~ 285 (296)
T 3e5z_A 263 FGGPEGRTLYMTVS---T-EFWSIETN 285 (296)
T ss_dssp EESTTSCEEEEEET---T-EEEEEECS
T ss_pred EECCCCCEEEEEcC---C-eEEEEEcc
Confidence 8 689999999886 4 45556665
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.50 E-value=1.7e-11 Score=117.24 Aligned_cols=233 Identities=11% Similarity=0.081 Sum_probs=152.1
Q ss_pred cceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeE
Q 008844 23 HGVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 23 ~~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~ 101 (551)
.......+|+++|+ +++++..++.|..|+. +++ ...+... ...+..++++++|+++++...++.|.+|+.. +..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~--~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDA--TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEES--CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCC--CCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence 34567889999998 6677777899999998 454 3444433 5678999999999966665556789999875 543
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
. .+..... +. ....+..+++
T Consensus 119 ~-~~~~~~~---------~~--------------------------------------------------~~~~~~~i~~ 138 (305)
T 3dr2_A 119 H-LLVGRYA---------GK--------------------------------------------------RLNSPNDLIV 138 (305)
T ss_dssp E-EEECEET---------TE--------------------------------------------------ECSCCCCEEE
T ss_pred E-EEEeccC---------CC--------------------------------------------------ccCCCCCEEE
Confidence 2 2211000 00 0004567888
Q ss_pred eeCCCEEEE----Eec-------------CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC------C
Q 008844 182 NKYGDLVYV----GNS-------------KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND------R 238 (551)
Q Consensus 182 s~~g~~l~~----g~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D------g 238 (551)
+++|+++++ |.. .+.|+.||..+++..... .......++|+|+++.|+++... +
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~ 215 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSV 215 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEEECTTSSEEEEEECCC---CCC
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceEEcCCCCEEEEEecCCcCCCCC
Confidence 888887765 332 357888888777654332 23456789999999988777665 6
Q ss_pred eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 239 TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
.|++|++.... ......+.. ..... ..++++++|++.+ ++. ++
T Consensus 216 ~i~~~~~~~~~---------------------------l~~~~~~~~~~~~~p-----dgi~~d~~G~lwv-~~~---~g 259 (305)
T 3dr2_A 216 EITAFAWRDGA---------------------------LHDRRHFASVPDGLP-----DGFCVDRGGWLWS-SSG---TG 259 (305)
T ss_dssp EEEEEEEETTE---------------------------EEEEEEEECCSSSCC-----CSEEECTTSCEEE-CCS---SE
T ss_pred EEEEEEecCCC---------------------------ccCCeEEEECCCCCC-----CeEEECCCCCEEE-ecC---Cc
Confidence 89999821100 000001100 11112 2678999999544 444 44
Q ss_pred eEEEEecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEE
Q 008844 318 KIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVY 361 (551)
Q Consensus 318 ~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~ 361 (551)
|++|+..++.+..+..+. .+..++|+|+++.|+.++.++..+
T Consensus 260 -v~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 260 -VCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp -EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred -EEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 999999888888887665 589999999998888777654433
No 206
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=1.4e-10 Score=110.14 Aligned_cols=236 Identities=9% Similarity=0.041 Sum_probs=161.9
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEc---CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVL---QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
...+.+|++.++|+++++...++.|.+||.. +... .+.. ...+..+.+.+++. ++++...++.+..|+.. +
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGE---VWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSC---EEEEETTTTEEEEECTT-S
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCC---EEEeCCCCCeEEEECCC-C
Confidence 5679999999999977776668899999987 5543 3332 24577788877653 56665667889999876 3
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIV 223 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 223 (551)
........ . ....+..++++++|.++++...++.|.+||. +++............+.+++
T Consensus 88 ~~~~~~~~--~-----------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 88 IIKEYTLP--N-----------------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp CEEEEECS--S-----------------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred cEEEEeCC--C-----------------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE
Confidence 33222110 0 1116789999999988877777889999998 66554332223456789999
Q ss_pred EeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee-ecccccccceeeeeeeEEcC
Q 008844 224 FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL-FREFQDSITKMHWKAPCFSG 302 (551)
Q Consensus 224 ~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~s~ 302 (551)
++++|+++++...++.|..|+. . +..... .......+ ..+++++
T Consensus 148 ~~~~g~l~v~~~~~~~i~~~~~-~-----------------------------g~~~~~~~~~~~~~~-----~~i~~~~ 192 (299)
T 2z2n_A 148 LGSDNALWFTENQNNAIGRITE-S-----------------------------GDITEFKIPTPASGP-----VGITKGN 192 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-T-----------------------------CCEEEEECSSTTCCE-----EEEEECT
T ss_pred EcCCCCEEEEeCCCCEEEEEcC-C-----------------------------CcEEEeeCCCCCCcc-----eeEEECC
Confidence 9999988777777889999982 1 110100 11111112 2789999
Q ss_pred CCCEEEEeeccCCcceEEEEecCCceeEE-EecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 303 DGEWVIAGSASKGEHKIYIWDRAGYLVKI-LEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 303 dg~~l~~gs~~~~dg~I~iwd~~~~~~~~-l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+|++.++... .+.|++|+..+..... +..+...+.++++++++.++++...++.|.+|+..
T Consensus 193 ~g~l~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 193 DDALWFVEII---GNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TSSEEEEETT---TTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCCEEEEccC---CceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 9997776655 6789999987443322 23345678999999999977777678899999973
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=1.2e-11 Score=133.49 Aligned_cols=246 Identities=11% Similarity=0.081 Sum_probs=155.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCC--------
Q 008844 24 GVMKCIAFNRRGTLLAAGCSD-----GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKS-------- 90 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~-------- 90 (551)
..+..++|||||++||.++.+ ..|++||+.+++.+.... + ...+..++|+|| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~--~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-K--WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-E--EEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-C--CceeccEEEECC-CEEEEEEecCccccccccc
Confidence 368899999999999987654 469999999998755321 1 223468899999 99988887654
Q ss_pred ------EEEEEcCCCeE--EEEEEcCC---CeeEEEEecCCCCCcEEEEeeC----CCCcEEEEcCCC--c-eeeecccc
Q 008844 91 ------LTLWDVLKGEK--ITRIVLQQ---TPLQARLHPGSSTPSLCLACPL----SSAPMIVDLSTG--S-TSILPIAV 152 (551)
Q Consensus 91 ------i~vwd~~~~~~--~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~----~~~i~i~d~~~~--~-~~~~~~~~ 152 (551)
|.+|++.++.. ...+.... ....+.|+|++.. ++++... ...+++||+.++ . ...+....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 316 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL 316 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEEEECCCCCCcccEEecCCC
Confidence 88999877652 22233222 3678889998752 3333322 347889999876 3 22221110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec----CceEEEEECCCC--cEEEeeeccCccceEEEEEee
Q 008844 153 PDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS----KGEILVIDHKSN--QIRALVPVSGAAVIKNIVFSR 226 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~----dg~i~i~d~~~~--~~~~~~~~~~~~~i~~l~~s~ 226 (551)
. ..... ++++|+.|+..+. ++.|.+||+.++ .....+. .+...+..++|+
T Consensus 317 --~-------------------~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~- 372 (741)
T 1yr2_A 317 --K-------------------AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA- 372 (741)
T ss_dssp --S-------------------SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-
T ss_pred --C-------------------ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-
Confidence 0 22333 3588988888765 456999999885 3344442 445567778887
Q ss_pred CCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc-cccccceeeeeeeEEcCCCC
Q 008844 227 NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE-FQDSITKMHWKAPCFSGDGE 305 (551)
Q Consensus 227 ~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~s~dg~ 305 (551)
++.++++...|+..+||.+. .. +.....+.. ....+. .++++|++.
T Consensus 373 ~~~lv~~~~~dg~~~l~~~~---------------------------~~-g~~~~~l~~~~~~~v~-----~~~~s~d~~ 419 (741)
T 1yr2_A 373 GNRLFASYIHDAKSQVLAFD---------------------------LD-GKPAGAVSLPGIGSAS-----GLSGRPGDR 419 (741)
T ss_dssp BTEEEEEEEETTEEEEEEEE---------------------------TT-SCEEEECBCSSSCEEE-----EEECCBTCS
T ss_pred CCEEEEEEEECCEEEEEEEe---------------------------CC-CCceeeccCCCCeEEE-----EeecCCCCC
Confidence 66677888889998888611 10 122222221 122333 678889988
Q ss_pred EEEEeec-cCCcceEEEEecC-CceeEEEe
Q 008844 306 WVIAGSA-SKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 306 ~l~~gs~-~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
.|+.... ....+.|++||+. ++ ...+.
T Consensus 420 ~l~~~~ss~~~P~~i~~~d~~tg~-~~~l~ 448 (741)
T 1yr2_A 420 HAYLSFSSFTQPATVLALDPATAK-TTPWE 448 (741)
T ss_dssp CEEEEEEETTEEEEEEEEETTTTE-EEECS
T ss_pred EEEEEEcCCCCCCEEEEEECCCCc-EEEEe
Confidence 6663322 1115889999998 55 44443
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.46 E-value=3.5e-12 Score=136.70 Aligned_cols=234 Identities=11% Similarity=0.017 Sum_probs=147.2
Q ss_pred cCCCCEEEEEeCCC---e--EEEEeccCCceeeEeec----ccccccEEEEEecCCCCEEEEE-----eCCCCEEEEEcC
Q 008844 32 NRRGTLLAAGCSDG---S--CVIWDFETRGIAKELRD----KECVAAITSVCWSKYGHRILVS-----AADKSLTLWDVL 97 (551)
Q Consensus 32 s~dg~~latg~~dg---~--I~iwd~~~~~~~~~~~~----~~h~~~V~~l~~s~~g~~l~s~-----s~dg~i~vwd~~ 97 (551)
+|+|.+++....++ . |.+.+...+.....+.. .+|...+.+++|||||++|+.+ +.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888776543 3 44444444443333321 1345679999999999999843 335689999998
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
+|+.+. .... +. ....
T Consensus 156 tg~~~~----~~~~------~~------------------------------------------------------~~~~ 171 (695)
T 2bkl_A 156 SGEWSK----VDVI------EG------------------------------------------------------GKYA 171 (695)
T ss_dssp TCCBCS----SCCB------SC------------------------------------------------------CTTC
T ss_pred CCCCcC----Cccc------Cc------------------------------------------------------cccc
Confidence 876420 0000 00 0125
Q ss_pred EEEEeeCCCEEEEEecCce-------------EEEEECCCCcE--EEeeec-cCccceEEEEEeeCCCEEEEeeCCC---
Q 008844 178 AACFNKYGDLVYVGNSKGE-------------ILVIDHKSNQI--RALVPV-SGAAVIKNIVFSRNGQYLLTNSNDR--- 238 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~-------------i~i~d~~~~~~--~~~~~~-~~~~~i~~l~~s~~g~~l~t~s~Dg--- 238 (551)
.++|+|+|+.|+.++.+.. |++|++.++.. ...+.. .+...+..+.|+|+|++|+.++.++
T Consensus 172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 251 (695)
T 2bkl_A 172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE 251 (695)
T ss_dssp CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence 6889999999998887665 99999998762 222211 3446788999999999998887665
Q ss_pred -eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 239 -TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 239 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
.|++|+. + +. ....+..+...+. ...+ ++|.+++.+..+..++
T Consensus 252 ~~l~~~~~--~---------------------------~~-~~~~l~~~~~~~~-----~~~~-~~g~l~~~s~~~~~~~ 295 (695)
T 2bkl_A 252 NDVYWKRP--G---------------------------EK-DFRLLVKGVGAKY-----EVHA-WKDRFYVLTDEGAPRQ 295 (695)
T ss_dssp EEEEEECT--T---------------------------CS-SCEEEEECSSCCE-----EEEE-ETTEEEEEECTTCTTC
T ss_pred eEEEEEcC--C---------------------------CC-ceEEeecCCCceE-----EEEe-cCCcEEEEECCCCCCC
Confidence 5555551 0 01 1222333333332 3445 5666444443222368
Q ss_pred eEEEEecC-Cce---eEEEecC-CCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 318 KIYIWDRA-GYL---VKILEGP-KEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 318 ~I~iwd~~-~~~---~~~l~~h-~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
.|++|++. +.. ...+..+ ...+..++|+ ++.++++...|+..+||.+.
T Consensus 296 ~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 296 RVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 99999998 543 3333333 4568889998 67788888889998888665
No 209
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.45 E-value=8e-12 Score=117.09 Aligned_cols=197 Identities=10% Similarity=0.038 Sum_probs=134.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
..+.+++++++|+++++.. ++.|.+|+..+... ..+... ....+.+|++.++|+++++...++.|.+|+..+.....
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 143 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCC-SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecC-CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence 4678899999999776665 88999999876543 333221 13678999999999877776667888888654332111
Q ss_pred EEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee
Q 008844 104 RIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK 183 (551)
Q Consensus 104 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 183 (551)
. . .. ....+.++++++
T Consensus 144 ~--~----------~~----------------------------------------------------~~~~p~~i~~~~ 159 (270)
T 1rwi_B 144 L--P----------FT----------------------------------------------------GLNDPDGVAVDN 159 (270)
T ss_dssp C--C----------CC----------------------------------------------------SCCSCCCEEECT
T ss_pred e--c----------cc----------------------------------------------------cCCCceeEEEeC
Confidence 0 0 00 001567889999
Q ss_pred CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccC
Q 008844 184 YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGI 263 (551)
Q Consensus 184 ~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (551)
+|+++++...++.|.+||..+........ .+...+.+|+++++|.++++...++.|.+|+...
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~---------------- 222 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS---------------- 222 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC----------------
T ss_pred CCCEEEEECCCCEEEEEecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC----------------
Confidence 99877776778899999998876544332 3346789999999997777777788999998211
Q ss_pred CCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC
Q 008844 264 AEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
.............+ ..++++++|+++++... ++.|++|++.
T Consensus 223 -------------~~~~~~~~~~~~~p-----~~i~~~~~g~l~v~~~~---~~~v~~~~~~ 263 (270)
T 1rwi_B 223 -------------TTSTVLPFTGLNTP-----LAVAVDSDRTVYVADRG---NDRVVKLTSL 263 (270)
T ss_dssp -------------SCCEECCCCSCSCE-----EEEEECTTCCEEEEEGG---GTEEEEECCC
T ss_pred -------------CcceeeccCCCCCc-----eeEEECCCCCEEEEECC---CCEEEEEcCC
Confidence 00000000111122 28899999997777777 8999999987
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.45 E-value=1.2e-10 Score=112.52 Aligned_cols=232 Identities=13% Similarity=0.063 Sum_probs=148.1
Q ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 008844 26 MKCIAFNRRG-TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITR 104 (551)
Q Consensus 26 V~~l~fs~dg-~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~ 104 (551)
..+.+|+|++ .++++...++.|.+|+..++... .+.. ...+.+++|+++|+++++. .+ .|.+||..+++....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL---PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC---CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 4678899974 56666667889999999877543 3322 4679999999999877654 34 488999877764322
Q ss_pred EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC
Q 008844 105 IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184 (551)
Q Consensus 105 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 184 (551)
...... .....+..++++++
T Consensus 125 ~~~~~~------------------------------------------------------------~~~~~~~~i~~d~~ 144 (326)
T 2ghs_A 125 AELESD------------------------------------------------------------LPGNRSNDGRMHPS 144 (326)
T ss_dssp ECSSTT------------------------------------------------------------CTTEEEEEEEECTT
T ss_pred eeCCCC------------------------------------------------------------CCCCCCCCEEECCC
Confidence 111000 00015678889999
Q ss_pred CCEEEEEec------CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEeCcCCccccchhhh
Q 008844 185 GDLVYVGNS------KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYDNLLPLKNGLEALV 257 (551)
Q Consensus 185 g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~ 257 (551)
|+++++... .+.|+.++ +++..... .+......++|+|+++.|+.+ +.++.|.+|++.... + ..
T Consensus 145 G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~--~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-G-l~--- 215 (326)
T 2ghs_A 145 GALWIGTMGRKAETGAGSIYHVA--KGKVTKLF--ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART-G-LP--- 215 (326)
T ss_dssp SCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE--EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT-C-CB---
T ss_pred CCEEEEeCCCcCCCCceEEEEEe--CCcEEEee--CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc-C-Cc---
Confidence 986654432 35677777 45543332 233456789999999877554 457899999821000 0 00
Q ss_pred hhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCC
Q 008844 258 DIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKE 337 (551)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~ 337 (551)
......+..+....... ..++++++|++.++... .+.|.+|+..++.+..+..+..
T Consensus 216 ----------------~~~~~~~~~~~~~~~~p-----~gi~~d~~G~lwva~~~---~~~v~~~d~~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 216 ----------------TGKAEVFIDSTGIKGGM-----DGSVCDAEGHIWNARWG---EGAVDRYDTDGNHIARYEVPGK 271 (326)
T ss_dssp ----------------SSCCEEEEECTTSSSEE-----EEEEECTTSCEEEEEET---TTEEEEECTTCCEEEEEECSCS
T ss_pred ----------------ccCceEEEECCCCCCCC-----CeeEECCCCCEEEEEeC---CCEEEEECCCCCEEEEEECCCC
Confidence 00001111111111112 27889999987777665 6789999988888888887777
Q ss_pred ceEEEEEe-cCCCeEEEEcC
Q 008844 338 ALIDLAWH-PVHPIIVSVSL 356 (551)
Q Consensus 338 ~v~~l~~s-p~~~~l~s~s~ 356 (551)
.+++++|+ |++..|+.++.
T Consensus 272 ~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEB
T ss_pred CcEEEEEecCCCCEEEEEec
Confidence 89999998 88776655443
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=2.2e-11 Score=118.54 Aligned_cols=271 Identities=11% Similarity=0.066 Sum_probs=167.9
Q ss_pred ceEEEEEEcCCCCEEEEEe--CCCeEEEEeccCCceeeEee-----cccccccEEEEEecCCCCEEEEEeC-----CCCE
Q 008844 24 GVMKCIAFNRRGTLLAAGC--SDGSCVIWDFETRGIAKELR-----DKECVAAITSVCWSKYGHRILVSAA-----DKSL 91 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~--~dg~I~iwd~~~~~~~~~~~-----~~~h~~~V~~l~~s~~g~~l~s~s~-----dg~i 91 (551)
..+..++++++|+++++.. .++.++||.+.++.+ ..+. ...|-..+.+|++.++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5789999999999988864 234356666554543 2221 1124578999999999876555433 5789
Q ss_pred EEEEcCCCeEEEEEEcCC-------CeeEEEEecCCCCCcEEEEee---CCCCcEEEEcCCCceeeeccccCCCCCCCCC
Q 008844 92 TLWDVLKGEKITRIVLQQ-------TPLQARLHPGSSTPSLCLACP---LSSAPMIVDLSTGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~-------~~~~~~~~p~~~~~~~~~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 161 (551)
.+||+.+++.+..+..+. .+..+.+.+.+ ..++++.. .++.|.+||+.++............
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~--g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~------ 167 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH--NFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI------ 167 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT--TEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT------
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCC--CEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc------
Confidence 999999999888887642 24677888753 23455555 6788999999887754432110000
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC-eE
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR-TI 240 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg-~i 240 (551)
......+..+|..+.+...+|.+..|. ..+..|+|+|+|+.|+++...+ .|
T Consensus 168 -------------~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 168 -------------APEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp -------------SCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEE
T ss_pred -------------cccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeE
Confidence 000123445676777777777765442 2357799999999888887765 44
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee--ecccccccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL--FREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
..++...-..... ........ ..+...... .++++++|+++++... .+.
T Consensus 220 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~g~pd-----gia~d~~G~l~va~~~---~~~ 270 (343)
T 2qe8_A 220 YRIKSADLSNLQL---------------------TDAELGSKIERYSEKPICD-----GISIDKDHNIYVGDLA---HSA 270 (343)
T ss_dssp EEEEHHHHTCTTC---------------------CHHHHHTTCEEEEECCSCS-----CEEECTTCCEEEEEGG---GTE
T ss_pred EEEEHHHhcCCCC---------------------ChhhhhcceEecccCCCCc-----eEEECCCCCEEEEccC---CCe
Confidence 4444100000000 00000000 001111222 7899999998888877 889
Q ss_pred EEEEec-CCceeEEEecC-CCceEEEEEecCCCeEEEEcCCCcE
Q 008844 319 IYIWDR-AGYLVKILEGP-KEALIDLAWHPVHPIIVSVSLTGWV 360 (551)
Q Consensus 319 I~iwd~-~~~~~~~l~~h-~~~v~~l~~sp~~~~l~s~s~dg~i 360 (551)
|.+|+. .|+........ ...+.+++|.+++.++++.+..+.+
T Consensus 271 V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 271 IGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred EEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 999999 47654444332 3568899999998877777654443
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=1.9e-11 Score=130.81 Aligned_cols=260 Identities=13% Similarity=0.091 Sum_probs=151.1
Q ss_pred cceEEEEEEcCCCCEEEEEe-----CCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcC
Q 008844 23 HGVMKCIAFNRRGTLLAAGC-----SDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~-----~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~ 97 (551)
...+..++|||||++||.+. ....|+|||+.+++.+... .. ......++|+ ||+.|+.++.+..
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~--~~k~~~~~Ws-Dg~~l~y~~~~~~------- 196 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LK--DVKFSGISWL-GNEGFFYSSYDKP------- 196 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EE--EEESCCCEEE-TTTEEEEEESSCC-------
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cC--CceeccEEEe-CCCEEEEEEecCc-------
Confidence 34688899999999998543 2357999999999865432 11 1123678999 9999998887743
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCC-CCCCc
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGT-PPFTP 176 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 176 (551)
.+.. .........|++|++.++......+... .. +....
T Consensus 197 ~~~~------------------------~~~~~~~~~v~~~~lgt~~~~~~~v~~~----------------~~~~~~~~ 236 (693)
T 3iuj_A 197 DGSE------------------------LSARTDQHKVYFHRLGTAQEDDRLVFGA----------------IPAQHHRY 236 (693)
T ss_dssp C-------------------------------CCCCEEEEEETTSCGGGCEEEESC----------------SGGGCCSE
T ss_pred cccc------------------------ccccCCCcEEEEEECCCCcccceEEEec----------------CCCCCeEE
Confidence 0000 0000001122333333222100000000 00 01135
Q ss_pred eEEEEeeCCCEEEEEec----CceEEEEECCCCc-EEEeeeccCccceEEEEEeeCCCEEEEeeC-C---CeEEEEeCcC
Q 008844 177 TAACFNKYGDLVYVGNS----KGEILVIDHKSNQ-IRALVPVSGAAVIKNIVFSRNGQYLLTNSN-D---RTIRIYDNLL 247 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~----dg~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-D---g~i~iwd~~~ 247 (551)
..+.|+|+|++|+.... ...|+++|+.++. ....+. .+....... |+++|..|+..+. + +.|.++++..
T Consensus 237 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 237 VGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp EEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred EEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 67889999998866543 2589999998763 222332 444444444 6677766554443 3 5688887322
Q ss_pred CccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCc
Q 008844 248 PLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGY 327 (551)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~ 327 (551)
+. ......+..+...+ - .|++++++|+.....++...|++|++.+.
T Consensus 315 ~~---------------------------~~~~~~l~~~~~~~------~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 315 PG---------------------------PAHWRDLIPERQQV------L-TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp CC---------------------------GGGCEEEECCCSSC------E-EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred CC---------------------------ccccEEEecCCCCE------E-EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 11 00112233333322 2 78899999988876433447999999855
Q ss_pred eeEEEec-CCCceEEEEEecCCCeEEEEcCC----CcEEEEecCCCC
Q 008844 328 LVKILEG-PKEALIDLAWHPVHPIIVSVSLT----GWVYIWAKDYTE 369 (551)
Q Consensus 328 ~~~~l~~-h~~~v~~l~~sp~~~~l~s~s~d----g~i~iW~~~~~~ 369 (551)
....+.. +...+..+.++|++..|+....+ +.|+.|++.+++
T Consensus 361 ~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 5565543 34567788888888866555433 789999987764
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.39 E-value=1.3e-09 Score=103.35 Aligned_cols=236 Identities=11% Similarity=0.025 Sum_probs=161.3
Q ss_pred cccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC---CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC
Q 008844 67 VAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ---QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG 143 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~ 143 (551)
...+.+|++.++|+++++...++.|.+||.. ++... +... ..+..+.+.+++ .++++...++.+..++.. +
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLG---DIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTS---CEEEEETTTTEEEEECTT-S
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCC---CEEEEecCCCeEEEECCC-C
Confidence 4678999999999977777678999999987 65443 3332 346677777654 256666667789999887 5
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEE
Q 008844 144 STSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIV 223 (551)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~ 223 (551)
......... ....+.++++.++|+++++...++.|..||.. ++............+.+++
T Consensus 93 ~~~~~~~~~-------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 93 GFTEYPLPQ-------------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp CEEEEECSS-------------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred CeEEecCCC-------------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence 543221110 01267899999999887777778899999988 6554332112456789999
Q ss_pred EeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee-eecccccccceeeeeeeEEcC
Q 008844 224 FSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA-LFREFQDSITKMHWKAPCFSG 302 (551)
Q Consensus 224 ~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~s~ 302 (551)
++++|+++++...++.|..|+. .. .... ........+ ..+++++
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g-----------------------------~~~~~~~~~~~~~~-----~~i~~d~ 197 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TG-----------------------------KLEEYPLPTNAAAP-----VGITSGN 197 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TC-----------------------------CEEEEECSSTTCCE-----EEEEECT
T ss_pred ECCCCCEEEEecCCCeEEEECC-CC-----------------------------cEEEeeCCCCCCCc-----ceEEECC
Confidence 9999997776666788999982 10 1010 010111112 2789999
Q ss_pred CCCEEEEeeccCCcceEEEEecCCceeEE-EecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 303 DGEWVIAGSASKGEHKIYIWDRAGYLVKI-LEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 303 dg~~l~~gs~~~~dg~I~iwd~~~~~~~~-l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+|++.++... .+.|.+|+..+..... +..+...+.++++.+++.++++...++.|..|+..
T Consensus 198 ~g~l~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 198 DGALWFVEIM---GNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TSSEEEEETT---TTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCEEEEccC---CCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 9987776655 6789999987544433 33345678999999999977777667899999873
No 214
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.37 E-value=2.5e-11 Score=117.88 Aligned_cols=259 Identities=9% Similarity=-0.050 Sum_probs=166.7
Q ss_pred eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe----------CCCCEEEEEcCCCeEEEEEEcC-------
Q 008844 46 SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA----------ADKSLTLWDVLKGEKITRIVLQ------- 108 (551)
Q Consensus 46 ~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~------- 108 (551)
+|.++|..+++.+.++... ..+ .+.++|++++|+++. .+++|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG--~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGA--FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEEC--TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCC--CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 8899999999999998764 345 799999999999886 3688999999999999999765
Q ss_pred -CCeeEEEEecCCCCCcEEEEeeC-CCCcEE--EEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC
Q 008844 109 -QTPLQARLHPGSSTPSLCLACPL-SSAPMI--VDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY 184 (551)
Q Consensus 109 -~~~~~~~~~p~~~~~~~~~~~~~-~~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 184 (551)
..+..+.++|++.. ++++... ...+.+ +|+.+ ...++.. . ++.+.|+
T Consensus 123 g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t--v~~i~v~-----------------------~--~~~~~p~ 173 (368)
T 1mda_H 123 GPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD--DQLTKSA-----------------------S--CFHIHPG 173 (368)
T ss_dssp SCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE--EEEEECS-----------------------S--CCCCEEE
T ss_pred CCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh--ceEEECC-----------------------C--ceEEccC
Confidence 35778999998753 4444433 456777 88876 2222110 0 0112344
Q ss_pred C-CEEEEEecCceEEEEECCC-----CcEEE----eeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 185 G-DLVYVGNSKGEILVIDHKS-----NQIRA----LVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 185 g-~~l~~g~~dg~i~i~d~~~-----~~~~~----~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
| ..+++.+.+|.+.+.++.+ ++... .+. ....+. . .+++..++..+. +.|.+.|+....
T Consensus 174 g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~-vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~----- 242 (368)
T 1mda_H 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN-CSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAG----- 242 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC-BCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSC-----
T ss_pred CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeee-CCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCc-----
Confidence 4 3455566788888888876 43321 121 123333 3 666666666666 899999831100
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeeccc-----ccccceeeeeeeEEcCCCCEEEEeeccC-C-----cceEEEEe
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFREF-----QDSITKMHWKAPCFSGDGEWVIAGSASK-G-----EHKIYIWD 323 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~s~dg~~l~~gs~~~-~-----dg~I~iwd 323 (551)
...+..+... ........+..++|+|+|+.++.+.... + .+.+.++|
T Consensus 243 ----------------------~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD 300 (368)
T 1mda_H 243 ----------------------ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp ----------------------CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred ----------------------ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEE
Confidence 0001111000 0000011111378999999888764311 1 12355999
Q ss_pred cC-CceeEEEecCCCceEEEEEecCCC-eEEEEc-CCCcEEEEecCCCCcc
Q 008844 324 RA-GYLVKILEGPKEALIDLAWHPVHP-IIVSVS-LTGWVYIWAKDYTENW 371 (551)
Q Consensus 324 ~~-~~~~~~l~~h~~~v~~l~~sp~~~-~l~s~s-~dg~i~iW~~~~~~~~ 371 (551)
+. ++.+..+.... ....|+|+|+++ ++++.. .++.|.++|+.+.+..
T Consensus 301 ~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 301 ASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp SSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 99 88888776543 688999999998 566666 5999999999987644
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.36 E-value=3.7e-11 Score=116.68 Aligned_cols=274 Identities=11% Similarity=-0.011 Sum_probs=171.6
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEe----------CCCeEEEEeccCCceeeEeecccc-----c
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGC----------SDGSCVIWDFETRGIAKELRDKEC-----V 67 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~----------~dg~I~iwd~~~~~~~~~~~~~~h-----~ 67 (551)
|.++|+.+++....+.. ...+ .++|+|||++|+++. .++.|.+||+.+++.+.++...+. .
T Consensus 48 vsvID~~t~~v~~~i~v--G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 48 NWVSCAGCGVTLGHSLG--AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEETTTTEEEEEEEE--CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred EEEEECCCCeEEEEEeC--CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 55888888877766654 2344 799999999998886 368899999999999999864300 1
Q ss_pred ccEEEEEecCCCCEEEEEeC--CCCEEE--EEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC-
Q 008844 68 AAITSVCWSKYGHRILVSAA--DKSLTL--WDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST- 142 (551)
Q Consensus 68 ~~V~~l~~s~~g~~l~s~s~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~- 142 (551)
.....+.|+|||++|+++.. ...|.+ +|+.+ +..+..... ..+.|.+. ..+++.+.++.+.+.++.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~--~~~~~~~~dg~~~~vd~~~~ 195 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAA--ATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEET--TEEECCCCTTSCEEEECCSS
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCC--eEEEEEcCCCCEEEEECccc
Confidence 23567899999999999875 457888 99877 555544322 12334443 3566777899999999876
Q ss_pred ----CceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCc--EEEeeecc--
Q 008844 143 ----GSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQ--IRALVPVS-- 214 (551)
Q Consensus 143 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~-- 214 (551)
++.... .. . ....... +. . .+++..++..+. +.|.+.|+.+.. .+..+...
T Consensus 196 ~~~~~~v~~~-~t--~-----------~i~vg~~--P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~ 254 (368)
T 1mda_H 196 PAAAGIVGAQ-CT--G-----------AQNCSSQ--AA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNES 254 (368)
T ss_dssp CCCCEECCCC-SC--T-----------TSCBCSC--CE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCT
T ss_pred cccCCeEEEE-ee--e-----------eeeCCCC--cc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccc
Confidence 322110 00 0 0000000 22 3 666666666666 999999997643 23322211
Q ss_pred ----C---ccceEEEEEeeCCCEEEEeeC---------CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccce
Q 008844 215 ----G---AAVIKNIVFSRNGQYLLTNSN---------DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSK 278 (551)
Q Consensus 215 ----~---~~~i~~l~~s~~g~~l~t~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (551)
+ ......++|+|+++.|+++.. ++.+.++|+. ..+
T Consensus 255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-----------------------------t~~ 305 (368)
T 1mda_H 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-----------------------------VGQ 305 (368)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-----------------------------SCC
T ss_pred cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC-----------------------------CCe
Confidence 0 111222689999998887543 2356699921 122
Q ss_pred eeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEec
Q 008844 279 CLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHP 346 (551)
Q Consensus 279 ~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp 346 (551)
.+..+..... . ..++|+|||++++.+.... ++.|.++|+. ++.+..+.... ....+++++
T Consensus 306 vv~~i~vg~~-p-----~gi~~s~Dg~~l~va~~~~-~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 306 TSGPISNGHD-S-----DAIIAAQDGASDNYANSAG-TEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEECCEEEEE-E-----CEEEECCSSSCEEEEEETT-TTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred EEEEEECCCC-c-----ceEEECCCCCEEEEEccCC-CCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 2333322211 1 2889999998554444301 7899999999 99998887553 344555543
No 216
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.36 E-value=1.4e-09 Score=106.08 Aligned_cols=241 Identities=8% Similarity=-0.050 Sum_probs=150.2
Q ss_pred Eec--CCCCEEEEEeC-CCCEEEEEcCCC----eEEEEEE--------cCCCeeEEEEecCCCCCcEEEEeeCC------
Q 008844 74 CWS--KYGHRILVSAA-DKSLTLWDVLKG----EKITRIV--------LQQTPLQARLHPGSSTPSLCLACPLS------ 132 (551)
Q Consensus 74 ~~s--~~g~~l~s~s~-dg~i~vwd~~~~----~~~~~~~--------~~~~~~~~~~~p~~~~~~~~~~~~~~------ 132 (551)
.++ ++.++|+..+. ++.|.|+|+.+. +.+..+. ....+..+.+.|++ +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG----i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA----IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC----EEEEEEEETTSCSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe----EEEEcCCCcCCCCC
Confidence 336 77888776654 789999999765 6666663 11245566777875 55565555
Q ss_pred CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-------------------c
Q 008844 133 SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-------------------S 193 (551)
Q Consensus 133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-------------------~ 193 (551)
+.+.++|..+.+.......... .......+.|+|+++.+++.. .
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~-----------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~ 226 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRG-----------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY 226 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCT-----------------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred CeEEEEECCCCeEEEEEccCCC-----------------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence 7899999998876543211100 001234588899999888874 3
Q ss_pred CceEEEEECCCCcEEEeeecc-CccceEEEEE--eeCCCEEEEee------CCCeEEEEeCcCCccccchhhhhhhccCC
Q 008844 194 KGEILVIDHKSNQIRALVPVS-GAAVIKNIVF--SRNGQYLLTNS------NDRTIRIYDNLLPLKNGLEALVDIEKGIA 264 (551)
Q Consensus 194 dg~i~i~d~~~~~~~~~~~~~-~~~~i~~l~~--s~~g~~l~t~s------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (551)
..+|.+||+.+++.+.++..+ .......|.| +|+++++++++ .+++|.+|... . +.......
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d-~--g~~~~~~v------ 297 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE-D--GKWNAEKV------ 297 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE-T--TEEEEEEE------
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec-C--CceeEEEE------
Confidence 689999999999888888654 2234556666 99999887776 46688887611 0 11100000
Q ss_pred CCCcceeeeeccceeeeeec----ccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC----CceeEEEecCC
Q 008844 265 EPNGIEKMKMVGSKCLALFR----EFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA----GYLVKILEGPK 336 (551)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~----~~~~~~l~~h~ 336 (551)
+..........+. .+.. + ......+.+|+||++|.++... .+.|.+||+. .+++..+....
T Consensus 298 -------Idi~~~~v~~~lp~~~~~f~~-~-~~~pa~I~lS~DGrfLYVSnrg--~d~VavfdV~d~~~~~lv~~I~tGG 366 (462)
T 2ece_A 298 -------IEIPAEPLEGNLPEILKPFKA-V-PPLVTDIDISLDDKFLYLSLWG--IGEVRQYDISNPFKPVLTGKVKLGG 366 (462)
T ss_dssp -------EEECCEECCSSCCGGGGGGTE-E-CCCCCCEEECTTSCEEEEEETT--TTEEEEEECSSTTSCEEEEEEECBT
T ss_pred -------EeCCCcccccccccccccccc-C-CCceeEEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEEEEeCC
Confidence 0000000000000 0000 0 0112278999999999998873 6899999985 34555554321
Q ss_pred --------------CceEEEEEecCCCeEEEEc
Q 008844 337 --------------EALIDLAWHPVHPIIVSVS 355 (551)
Q Consensus 337 --------------~~v~~l~~sp~~~~l~s~s 355 (551)
+....++++|+|++|+++.
T Consensus 367 ~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 367 IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1368899999999998887
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=2.4e-11 Score=118.24 Aligned_cols=141 Identities=13% Similarity=0.184 Sum_probs=104.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---------eee-EeecccccccEEEEEecCCCCEEEEEeCCCCEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG---------IAK-ELRDKECVAAITSVCWSKYGHRILVSAADKSLTL 93 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~---------~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v 93 (551)
..++.+++++...+|++|+.++ +++|++.... ... .... +.. |+.|+| ++++|+++ .++.|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 3689999999999999999875 6669876543 111 1112 356 999999 89999998 7899999
Q ss_pred EEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 94 WDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
||+.+.........+..
T Consensus 111 ~dv~sl~~~~~~~~~~~--------------------------------------------------------------- 127 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEK--------------------------------------------------------------- 127 (388)
T ss_dssp EESSSTTCEEEEEECSS---------------------------------------------------------------
T ss_pred EEchhhhccCccceeec---------------------------------------------------------------
Confidence 99977654333322111
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.+..+.+.+. .+++++.+|.|.+||+.++.... +...|++++|+|+| ++.|..||+|++|+
T Consensus 128 -~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 128 -PVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFA 188 (388)
T ss_dssp -CEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETTSCEEEEE
T ss_pred -ceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcCCcEEEEc
Confidence 2333333322 38888999999999999887643 34589999999999 77888999999998
No 218
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.33 E-value=6.5e-10 Score=117.86 Aligned_cols=322 Identities=12% Similarity=0.039 Sum_probs=190.3
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccc---------cEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVA---------AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~---------~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
+..|++++.++.|.-+|..+|+.+..+....... ....+++ .+..|++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4567777778999999999999888776432110 0112233 3567888889999999999999999998
Q ss_pred EcC-C-----CeeEEEEecCCCCCcEEEEeeC------CCCcEEEEcCCCceeeeccccCCCCCCCC----------CCC
Q 008844 106 VLQ-Q-----TPLQARLHPGSSTPSLCLACPL------SSAPMIVDLSTGSTSILPIAVPDVANGIA----------PSS 163 (551)
Q Consensus 106 ~~~-~-----~~~~~~~~p~~~~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~----------~~~ 163 (551)
... . .+...-...+ . .++++.. ++.++.+|..+++................ ...
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~---~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFK---G-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEET---T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred cCCcCcCcCcccccCcEEEC---C-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 875 2 1111001111 1 3444432 68899999999987644322211100000 000
Q ss_pred --CCCCCCCCCCCCceEEEEeeCCCEEEEEecCc-------------------eEEEEECCCCcEEEeeeccCc------
Q 008844 164 --RNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG-------------------EILVIDHKSNQIRALVPVSGA------ 216 (551)
Q Consensus 164 --~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg-------------------~i~i~d~~~~~~~~~~~~~~~------ 216 (551)
...............+++++++.+|++++.++ .|..+|..+++.+..+...+.
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 00000000111234678999999999988765 599999999999888764322
Q ss_pred --cceEEEEEeeCC---CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee---------e
Q 008844 217 --AVIKNIVFSRNG---QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA---------L 282 (551)
Q Consensus 217 --~~i~~l~~s~~g---~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 282 (551)
....-+....+| ..|++++.+|.|+++|..... .+....... ......+. ..+..+. .
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~-----~l~~~~~~~--~~~~~~~d-~~g~~~~~~~~~~~~~~ 382 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK-----FISAKNFVP--VNWASGYD-KHGKPIGIAAARDGSKP 382 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC-----EEEEEESSC--CSSEEEEC-TTSCEEECGGGGCTTSC
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC-----Eeccccccc--cCcccccC-CCCceeeccccCcCCCc
Confidence 122223444577 678999999999999932211 111000000 00000000 0000000 0
Q ss_pred ecccccccceeeeeeeEEcCCCCEEEEeecc----------------------------------------CCcceEEEE
Q 008844 283 FREFQDSITKMHWKAPCFSGDGEWVIAGSAS----------------------------------------KGEHKIYIW 322 (551)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~----------------------------------------~~dg~I~iw 322 (551)
........-...|..++|+|++.+|++...+ ...+.|+.|
T Consensus 383 ~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~ 462 (677)
T 1kb0_A 383 QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW 462 (677)
T ss_dssp EECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE
T ss_pred cEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEE
Confidence 0000011112345678999998888876431 012789999
Q ss_pred ecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 323 DRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 323 d~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
|+. |+.+-.+.. ..++....+...+.+++.++.||.|++||..+++..
T Consensus 463 D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 463 DPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp ETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 999 888877763 345556667778888999999999999999988753
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.27 E-value=9.6e-11 Score=114.01 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=99.1
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.|+.++| ++++|+++ .+|.|++||+.+........ .+...+.++.+.+. .+++++.||.|.+|++..
T Consensus 89 ~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~-~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~------- 155 (388)
T 1xip_A 89 DVIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT-SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT------- 155 (388)
T ss_dssp TEEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE-ECSSCEEEEEECSS--EEEEEETTSEEEEEETTT-------
T ss_pred CeeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc-eeecceeeEEecCC--CEEEEECCCCEEEEEccC-------
Confidence 3788999 88999999 88999999998876544443 56677888777654 388889999999999221
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cce--eEE
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYL--VKI 331 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~--~~~ 331 (551)
.... .+...|. +++|||+| ++.|.. +|.|++|+.. +.. ...
T Consensus 156 ----------------------~~~~----~~~~~Vs-----~v~WSpkG--~~vg~~---dg~i~~~~~~~~~~~~k~~ 199 (388)
T 1xip_A 156 ----------------------KSTK----QLAQNVT-----SFDVTNSQ--LAVLLK---DRSFQSFAWRNGEMEKQFE 199 (388)
T ss_dssp ----------------------CCEE----EEEESEE-----EEEECSSE--EEEEET---TSCEEEEEEETTEEEEEEE
T ss_pred ----------------------Cccc----cccCCce-----EEEEcCCc--eEEEEc---CCcEEEEcCCCccccccce
Confidence 1111 1223444 99999999 677887 8999999888 443 555
Q ss_pred E------e---cCCCceEEEEEecCCCeEEEEc
Q 008844 332 L------E---GPKEALIDLAWHPVHPIIVSVS 355 (551)
Q Consensus 332 l------~---~h~~~v~~l~~sp~~~~l~s~s 355 (551)
+ . +|...|.+|.|.+++.+|++-+
T Consensus 200 I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 200 FSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 6 2 4678899999999999888743
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.26 E-value=3.3e-09 Score=112.64 Aligned_cols=327 Identities=12% Similarity=0.084 Sum_probs=188.5
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccc--------cE-EEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVA--------AI-TSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~--------~V-~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
+..|++++.++.|.-+|..+|+.+..+....... .+ ..+.+ .+..|++++.|+.|..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5577778888999999999999988875431100 00 11222 3567888889999999999999999988
Q ss_pred EcC-CC--eeEEEEecCCCCCcEEEEee------CCCCcEEEEcCCCceeeeccccCCCCCCCCCCC-----CCCCCC--
Q 008844 106 VLQ-QT--PLQARLHPGSSTPSLCLACP------LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSS-----RNKYSD-- 169 (551)
Q Consensus 106 ~~~-~~--~~~~~~~p~~~~~~~~~~~~------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-- 169 (551)
... .. ...+...|.-... .++++. .++.++.||..+++................... ......
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 764 11 0111111100011 344433 368899999999987644322110000000000 000000
Q ss_pred ----CCCCCCceEEEEeeCCCEEEEEecCce-------------------EEEEECCCCcEEEeeeccCc--------cc
Q 008844 170 ----GTPPFTPTAACFNKYGDLVYVGNSKGE-------------------ILVIDHKSNQIRALVPVSGA--------AV 218 (551)
Q Consensus 170 ----~~~~~~i~~~~~s~~g~~l~~g~~dg~-------------------i~i~d~~~~~~~~~~~~~~~--------~~ 218 (551)
.........+++++++.+|++++.++. |..||..+++.+..+...+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 001112246889999999999988874 99999999999887754321 12
Q ss_pred eEEEEEeeCCC---EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee------------e
Q 008844 219 IKNIVFSRNGQ---YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL------------F 283 (551)
Q Consensus 219 i~~l~~s~~g~---~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 283 (551)
+.......+|+ .|+.++.+|.++++|..... .+....... ..-...+.......+.. .
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-----~l~~~~~~~--~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~ 379 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE-----LLSAKGIVP--QSWTKGMDMKTGRPILDEENAAYWKNGKRN 379 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC-----EEEEEESSC--CSSEEEEETTTTEEEECHHHHCTTTSSSCE
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC-----Eeccccccc--cccccccCccCCCcccchhhccccCCCCee
Confidence 22223334665 78899999999999932211 110000000 00000000000000000 0
Q ss_pred cccccccceeeeeeeEEcCCCCEEEEeecc----------------------C--------------------CcceEEE
Q 008844 284 REFQDSITKMHWKAPCFSGDGEWVIAGSAS----------------------K--------------------GEHKIYI 321 (551)
Q Consensus 284 ~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~----------------------~--------------------~dg~I~i 321 (551)
.......-...|..++|+|+..+|++...+ - .+|.|+.
T Consensus 380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A 459 (689)
T 1yiq_A 380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA 459 (689)
T ss_dssp EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence 000111112246678999998888876431 0 0378999
Q ss_pred EecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc-ce
Q 008844 322 WDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN-WS 372 (551)
Q Consensus 322 wd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~-~~ 372 (551)
||+. |+.+-.+..+. ++....+...+.+|++++.||.|+.||..+++. |.
T Consensus 460 ~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 460 WDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp EETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 9999 98888877553 344446677888999999999999999998874 44
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=3.3e-09 Score=100.81 Aligned_cols=208 Identities=11% Similarity=0.063 Sum_probs=137.3
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc--cccccEEEEEecCCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK--ECVAAITSVCWSKYGH 80 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~--~h~~~V~~l~~s~~g~ 80 (551)
|..||+.++.. . .+.....+.+++++++|+++++. ++.|.+||..+++........ .....++.++++|+|+
T Consensus 37 i~~~d~~~~~~-~---~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~ 110 (297)
T 3g4e_A 37 VCRWDSFTKQV-Q---RVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR 110 (297)
T ss_dssp EEEEETTTCCE-E---EEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC
T ss_pred EEEEECCCCcE-E---EEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC
Confidence 34566665543 1 12234678999999999966543 568999999887654333221 1135688999999999
Q ss_pred EEEEEeCC---------CCEEEEEcCC-CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEc--CCCceeee
Q 008844 81 RILVSAAD---------KSLTLWDVLK-GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDL--STGSTSIL 148 (551)
Q Consensus 81 ~l~s~s~d---------g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~--~~~~~~~~ 148 (551)
++++.... ....||.+.. +...........+..++|+|++. .++++....+.|.+|++ .++.....
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~--~lyv~~~~~~~i~~~~~d~~~G~~~~~ 188 (297)
T 3g4e_A 111 YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHK--IFYYIDSLSYSVDAFDYDLQTGQISNR 188 (297)
T ss_dssp EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSC--EEEEEEGGGTEEEEEEECTTTCCEEEE
T ss_pred EEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCC--EEEEecCCCCcEEEEeccCCCCcccCc
Confidence 76654321 3345665543 44443333334567899999764 35666777888999987 44543211
Q ss_pred --ccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEe-
Q 008844 149 --PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFS- 225 (551)
Q Consensus 149 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s- 225 (551)
...... ....+..++++++|++.++....+.|.+||..+++.+..+. .+...+++++|.
T Consensus 189 ~~~~~~~~-----------------~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g 250 (297)
T 3g4e_A 189 RSVYKLEK-----------------EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGG 250 (297)
T ss_dssp EEEEECCG-----------------GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-CSSSBEEEEEEES
T ss_pred EEEEECCC-----------------CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-CCCCCceEEEEeC
Confidence 111100 01156789999999877777778899999999999888876 345679999998
Q ss_pred eCCCEEEEeeC
Q 008844 226 RNGQYLLTNSN 236 (551)
Q Consensus 226 ~~g~~l~t~s~ 236 (551)
|+++.|++++.
T Consensus 251 ~d~~~L~vt~~ 261 (297)
T 3g4e_A 251 KNYSEMYVTCA 261 (297)
T ss_dssp GGGCEEEEEEB
T ss_pred CCCCEEEEEcC
Confidence 88887766554
No 222
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.25 E-value=1.2e-09 Score=104.67 Aligned_cols=221 Identities=11% Similarity=0.066 Sum_probs=143.1
Q ss_pred ccccccCCCCccceeec--ccccceEEEEEEcCC-CCEEEEEeCCCeEEEEeccCCceeeE-eecc--cccccEEEEEec
Q 008844 3 APIIDPLQGDFPEVIEE--YLEHGVMKCIAFNRR-GTLLAAGCSDGSCVIWDFETRGIAKE-LRDK--ECVAAITSVCWS 76 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~--~~h~~~V~~l~fs~d-g~~latg~~dg~I~iwd~~~~~~~~~-~~~~--~h~~~V~~l~~s 76 (551)
|.+||+.++++...... ..+...+.+++++++ |+++++.. .+.|.+|+.. ++.... .... .....+.++++.
T Consensus 48 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d 125 (314)
T 1pjx_A 48 ILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD 125 (314)
T ss_dssp EEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC
T ss_pred EEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC
Confidence 56777777765322110 013356899999999 77665554 4479999988 665433 2211 112458899999
Q ss_pred CCCCEEEEEeCC---------------CCEEEEEcCCCeEEEEEEcCCCeeEEEEe----cCCCCCcEEEEeeCCCCcEE
Q 008844 77 KYGHRILVSAAD---------------KSLTLWDVLKGEKITRIVLQQTPLQARLH----PGSSTPSLCLACPLSSAPMI 137 (551)
Q Consensus 77 ~~g~~l~s~s~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~i~i 137 (551)
++|+++++...+ +.|..|+.. ++..........+..+.++ |++. .++++...++.+.+
T Consensus 126 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~--~l~v~~~~~~~i~~ 202 (314)
T 1pjx_A 126 YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPY--QLIVAETPTKKLWS 202 (314)
T ss_dssp TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEE--EEEEEETTTTEEEE
T ss_pred CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCC--EEEEEECCCCeEEE
Confidence 999877776554 467777765 6554443333456778888 7642 24555567789999
Q ss_pred EEcC-CCceeeeccccCCCCCCCCCCCCCCCCCCCCC-CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccC
Q 008844 138 VDLS-TGSTSILPIAVPDVANGIAPSSRNKYSDGTPP-FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG 215 (551)
Q Consensus 138 ~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 215 (551)
|++. .+..........- ..+. ..+..++++++|+++++...++.|.+||..+++.+..+. .+
T Consensus 203 ~~~~~~g~~~~~~~~~~~---------------~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~ 266 (314)
T 1pjx_A 203 YDIKGPAKIENKKVWGHI---------------PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CP 266 (314)
T ss_dssp EEEEETTEEEEEEEEEEC---------------CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CS
T ss_pred EECCCCCccccceEEEEC---------------CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CC
Confidence 9986 3432111000000 0000 157789999999988887788999999998777655554 34
Q ss_pred ccceEEEEEeeCCCEEEE-eeCCCeEEEEe
Q 008844 216 AAVIKNIVFSRNGQYLLT-NSNDRTIRIYD 244 (551)
Q Consensus 216 ~~~i~~l~~s~~g~~l~t-~s~Dg~i~iwd 244 (551)
...+.+++|+++|+.|++ ...++.|..|+
T Consensus 267 ~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 267 FEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 577899999999995554 45568899998
No 223
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=3.4e-09 Score=105.40 Aligned_cols=157 Identities=8% Similarity=0.012 Sum_probs=101.6
Q ss_pred EEEeeCCCEEEEEecCc--eEEEEECCCCcEEEee---eccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccc
Q 008844 179 ACFNKYGDLVYVGNSKG--EILVIDHKSNQIRALV---PVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGL 253 (551)
Q Consensus 179 ~~~s~~g~~l~~g~~dg--~i~i~d~~~~~~~~~~---~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~ 253 (551)
++|+++++.|+++..++ .|.+|+...+.....+ .......+.+++++|++..|+++..++.|+.|+....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~----- 250 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ----- 250 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC-----
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC-----
Confidence 88999999998888766 8999998766543332 1124466788999995555666777889999982111
Q ss_pred hhhhhhhccCCCCCcceeeeeccceeeeeecc--cccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEE
Q 008844 254 EALVDIEKGIAEPNGIEKMKMVGSKCLALFRE--FQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKI 331 (551)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~ 331 (551)
. ...+.. ........+++.++|+|++..|+.+... .+.|+.|+..+. +..
T Consensus 251 ------------------------~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~--~~~I~~~~~~g~-~~~ 302 (409)
T 3hrp_A 251 ------------------------E-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN--LSSVYKITPDGE-CEW 302 (409)
T ss_dssp ------------------------C-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT--TTEEEEECTTCC-EEE
T ss_pred ------------------------C-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC--CCEEEEEecCCC-EEE
Confidence 0 111100 0000000011278999965555544432 789999998865 333
Q ss_pred EecCC---------------CceEEEEEecCCCeEEEEc-CCCcEEEEecCCC
Q 008844 332 LEGPK---------------EALIDLAWHPVHPIIVSVS-LTGWVYIWAKDYT 368 (551)
Q Consensus 332 l~~h~---------------~~v~~l~~sp~~~~l~s~s-~dg~i~iW~~~~~ 368 (551)
+.++. .....|+|+|++.++++-. .++.|+.|++..+
T Consensus 303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 43332 3478999999999888877 7899999997554
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.21 E-value=2.4e-08 Score=98.30 Aligned_cols=265 Identities=11% Similarity=0.090 Sum_probs=162.7
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCee-
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPL- 112 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~- 112 (551)
++..|++++.++.|..+|..+++.+..+.... ......... +..++.++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG--EALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS 177 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSS--CCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC--ceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee
Confidence 35577788889999999999999887765431 111111222 4578888889999999999999998887654432
Q ss_pred -----EEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc-eEEEEeeCCC
Q 008844 113 -----QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP-TAACFNKYGD 186 (551)
Q Consensus 113 -----~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~g~ 186 (551)
..... + ..++++..++.+..+|..+++.............. .. . ... .+ ....+ .+.
T Consensus 178 ~~~~~~~~~~-~----~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~-~~-~--~~~------~~~~~p~~--~~~ 240 (376)
T 3q7m_A 178 LRGESAPTTA-F----GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGST-EI-D--RLS------DVDTTPVV--VNG 240 (376)
T ss_dssp -CCCCCCEEE-T----TEEEECCTTTEEEEEETTTCCEEEEEECCC---------------------CCCCCCEE--ETT
T ss_pred ecCCCCcEEE-C----CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCc-cc-c--ccc------ccCCCcEE--ECC
Confidence 11111 1 25777788899999999988765432211100000 00 0 000 00 00111 246
Q ss_pred EEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCC
Q 008844 187 LVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEP 266 (551)
Q Consensus 187 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (551)
.+++++.+|.|..+|..+++.+..... .....+.. ++..|++++.++.|..+|...
T Consensus 241 ~v~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t------------------- 296 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDG------------------- 296 (376)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTT-------------------
T ss_pred EEEEEecCcEEEEEECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCC-------------------
Confidence 788888899999999999998876642 22344443 466788888899999999211
Q ss_pred CcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEE-EEE
Q 008844 267 NGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALID-LAW 344 (551)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~-l~~ 344 (551)
++.+-.......... ..+.+ .+..|++++. +|.|+++|.. |+.+.........+.. ...
T Consensus 297 ----------G~~~w~~~~~~~~~~----~~~~~--~~~~l~v~~~---~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~ 357 (376)
T 3q7m_A 297 ----------GVTLWTQSDLLHRLL----TSPVL--YNGNLVVGDS---EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA 357 (376)
T ss_dssp ----------CCEEEEECTTTTSCC----CCCEE--ETTEEEEECT---TSEEEEEETTTCCEEEEEECCTTCBCSCCEE
T ss_pred ----------CcEEEeecccCCCcc----cCCEE--ECCEEEEEeC---CCeEEEEECCCCcEEEEEecCCCcceeCCEE
Confidence 221111111111111 02222 2567888887 8999999998 9888777654443332 222
Q ss_pred ecCCCeEEEEcCCCcEEEEe
Q 008844 345 HPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 345 sp~~~~l~s~s~dg~i~iW~ 364 (551)
.+..|+.++.+|.|+.|+
T Consensus 358 --~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 358 --ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp --ETTEEEEEBTTSCEEEEE
T ss_pred --ECCEEEEEeCCCEEEEEe
Confidence 245777888899999886
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.16 E-value=2.3e-08 Score=98.46 Aligned_cols=270 Identities=10% Similarity=0.028 Sum_probs=166.2
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccc-------cccEE-EEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKEC-------VAAIT-SVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIV 106 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h-------~~~V~-~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 106 (551)
+..|++++.++.|..||..+++.+..+..... ...+. .+.. ++..|++++.++.|..+|..+|+.+..+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 56788888899999999999998877654211 12232 2222 35678888889999999999999998887
Q ss_pred cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC
Q 008844 107 LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD 186 (551)
Q Consensus 107 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 186 (551)
....+.......+ ..++++..++.+..+|..+++............. .. ........ +.
T Consensus 131 ~~~~~~~~p~~~~----~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-----------~~----~~~~~~~~--~~ 189 (376)
T 3q7m_A 131 VAGEALSRPVVSD----GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-----------LR----GESAPTTA--FG 189 (376)
T ss_dssp CSSCCCSCCEEET----TEEEEECTTSEEEEEETTTCCEEEEEECCC----------------C----CCCCCEEE--TT
T ss_pred CCCceEcCCEEEC----CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-----------ec----CCCCcEEE--CC
Confidence 6644321111112 2677788899999999999886543221110000 00 00111222 45
Q ss_pred EEEEEecCceEEEEECCCCcEEEeeeccCccc---eEE---EEEee--CCCEEEEeeCCCeEEEEeCcCCccccchhhhh
Q 008844 187 LVYVGNSKGEILVIDHKSNQIRALVPVSGAAV---IKN---IVFSR--NGQYLLTNSNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 187 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~---i~~---l~~s~--~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
.+++++.+|.|..+|..+++.+.......... +.. +...| .+..+++++.++.|..+|...
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t----------- 258 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS----------- 258 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT-----------
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC-----------
Confidence 78888999999999999999877764322100 000 00111 245677788899999998211
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec-CC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG-PK 336 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~-h~ 336 (551)
++.+.... . .... .+.. ++..|++++. ++.|+.+|.. |+.+..... ..
T Consensus 259 ------------------G~~~w~~~-~-~~~~-----~~~~--~~~~l~~~~~---~g~l~~~d~~tG~~~w~~~~~~~ 308 (376)
T 3q7m_A 259 ------------------GQIMWKRE-L-GSVN-----DFIV--DGNRIYLVDQ---NDRVMALTIDGGVTLWTQSDLLH 308 (376)
T ss_dssp ------------------CCEEEEEC-C-CCEE-----EEEE--ETTEEEEEET---TCCEEEEETTTCCEEEEECTTTT
T ss_pred ------------------CcEEeecc-C-CCCC-----CceE--ECCEEEEEcC---CCeEEEEECCCCcEEEeecccCC
Confidence 11111111 0 1111 2222 4667777777 7899999998 887766652 22
Q ss_pred CceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 337 EALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 337 ~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
..+..... .+..|+.++.+|.|+++|..+++.
T Consensus 309 ~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 309 RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp SCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence 23333333 245788888899999999988764
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=4.9e-08 Score=103.49 Aligned_cols=295 Identities=12% Similarity=0.053 Sum_probs=166.6
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecc-ccc--ccEEEEEecCCCCEEEEEeC------CCCEEEEEcCCCeEEEE
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDK-ECV--AAITSVCWSKYGHRILVSAA------DKSLTLWDVLKGEKITR 104 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~-~h~--~~V~~l~~s~~g~~l~s~s~------dg~i~vwd~~~~~~~~~ 104 (551)
.+..|++++.|+.|..+|..+|+.+..+... ... ..+.+--.. .+..+++++. ++.|..||..+|+.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3567888899999999999999998887643 100 112110011 1345555543 68999999999999998
Q ss_pred EEcCCCe---------------------------------eEEEEecCCCCCcEEEEeeCCC------------------
Q 008844 105 IVLQQTP---------------------------------LQARLHPGSSTPSLCLACPLSS------------------ 133 (551)
Q Consensus 105 ~~~~~~~---------------------------------~~~~~~p~~~~~~~~~~~~~~~------------------ 133 (551)
+...... ..+.+.|... +++.+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~---~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN---TMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT---EEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC---EEEEECCCCccccCCCCCccCCCCeee
Confidence 8764321 1245555432 444444432
Q ss_pred -CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC---CEEEEEecCceEEEEECCCCcEEE
Q 008844 134 -APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG---DLVYVGNSKGEILVIDHKSNQIRA 209 (551)
Q Consensus 134 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~~g~~dg~i~i~d~~~~~~~~ 209 (551)
.+..+|..+++............- .......+..+....+| ..+++++.+|.|+++|..+++.+.
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~w-----------d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~ 351 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNW-----------DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS 351 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCS-----------CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred EEEEEEECCCCCEEEEEecCCCccc-----------ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence 488889998886654322111000 00001133444455577 689999999999999999999987
Q ss_pred eeeccCcc----------ce------------------------EEEEEeeCCCEEEEeeCCCeEEEEeCcCCcccc---
Q 008844 210 LVPVSGAA----------VI------------------------KNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNG--- 252 (551)
Q Consensus 210 ~~~~~~~~----------~i------------------------~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~--- 252 (551)
.+...... ++ ..++|+|++.++++...+-...++... .....
T Consensus 352 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~-~~~~g~~~ 430 (677)
T 1kb0_A 352 AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK-KWEFNQAG 430 (677)
T ss_dssp EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT-TCCTTCCC
T ss_pred cccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc-cccccccc
Confidence 66432111 11 146888988888887665444444311 00000
Q ss_pred ----chhhhhhhc--------cCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEE
Q 008844 253 ----LEALVDIEK--------GIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIY 320 (551)
Q Consensus 253 ----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~ 320 (551)
........+ .......+..+...+++.+-.+. +...+. ...++.++.++++++. ++.|+
T Consensus 431 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~-----~g~~~~~g~~v~~g~~---dg~l~ 501 (677)
T 1kb0_A 431 PGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWN-----GGTLTTAGNVVFQGTA---DGRLV 501 (677)
T ss_dssp TTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCC-----CCEEEETTTEEEEECT---TSEEE
T ss_pred ccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCc-----CcceEeCCCEEEEECC---CCcEE
Confidence 000000000 00000011112222233222221 111222 4456677888888887 99999
Q ss_pred EEecC-CceeEEEecCCC-ceEEEEEecCCCeEEE
Q 008844 321 IWDRA-GYLVKILEGPKE-ALIDLAWHPVHPIIVS 353 (551)
Q Consensus 321 iwd~~-~~~~~~l~~h~~-~v~~l~~sp~~~~l~s 353 (551)
+||.. |+.+..+..+.. ...-+.|.++|+.+++
T Consensus 502 a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 502 AYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 99999 999988875442 2344666788874443
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.13 E-value=4.3e-08 Score=104.11 Aligned_cols=296 Identities=11% Similarity=0.044 Sum_probs=166.8
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC---CCCEEEEEe------CCCCEEEEEcCCCeEEEEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK---YGHRILVSA------ADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~---~g~~l~s~s------~dg~i~vwd~~~~~~~~~~ 105 (551)
+..|++++.|+.|..+|..+|+.+..+....+......+..+| ++ .+++++ .++.|..||..+|+.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 5678889999999999999999887775420111111111222 44 444443 3689999999999999888
Q ss_pred EcCC--Ce------------------------------eEEEEecCCCCCcEEEEeeCCC-------------------C
Q 008844 106 VLQQ--TP------------------------------LQARLHPGSSTPSLCLACPLSS-------------------A 134 (551)
Q Consensus 106 ~~~~--~~------------------------------~~~~~~p~~~~~~~~~~~~~~~-------------------~ 134 (551)
.... +. ..+.+.|.. .+++.+..++ .
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~---~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL---NLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT---TEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC---CEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 6311 00 134555543 2555555554 3
Q ss_pred cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC---EEEEEecCceEEEEECCCCcEEEee
Q 008844 135 PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD---LVYVGNSKGEILVIDHKSNQIRALV 211 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l~~g~~dg~i~i~d~~~~~~~~~~ 211 (551)
+..+|..+++............- .......+....+..+|+ .+++++.+|.|+++|..+++.+...
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~w-----------d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAW-----------DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCS-----------CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEccCCceeEeeecCCcccc-----------cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 88999999987654322111000 000001222233334564 7889999999999999999987544
Q ss_pred eccCcc--------------------------------------ceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCc--c-
Q 008844 212 PVSGAA--------------------------------------VIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPL--K- 250 (551)
Q Consensus 212 ~~~~~~--------------------------------------~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~--~- 250 (551)
...... .-..++|+|+..+|++...+....++...... .
T Consensus 346 ~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~ 425 (689)
T 1yiq_A 346 GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNP 425 (689)
T ss_dssp ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCS
T ss_pred cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccc
Confidence 321100 01126889988888888776666555421100 0
Q ss_pred --ccchhh---hhhh-------ccCCC-CCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcc
Q 008844 251 --NGLEAL---VDIE-------KGIAE-PNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEH 317 (551)
Q Consensus 251 --~~~~~~---~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg 317 (551)
.....- ..+. ..... ...+..+...+++.+-.+..+ .... ...++..+.+|++|+. |+
T Consensus 426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~-----~g~~~tagglvf~gt~---dg 496 (689)
T 1yiq_A 426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFN-----GGTLSTAGNLVFEGSA---DG 496 (689)
T ss_dssp CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCC-----CCEEEETTTEEEEECT---TS
T ss_pred cccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCcc-----CccceECCCEEEEECC---CC
Confidence 000000 0000 00000 011222333334333332222 1111 3356667889999988 99
Q ss_pred eEEEEecC-CceeEEEecCCCc-eEEEEEecCCC-eEEEE
Q 008844 318 KIYIWDRA-GYLVKILEGPKEA-LIDLAWHPVHP-IIVSV 354 (551)
Q Consensus 318 ~I~iwd~~-~~~~~~l~~h~~~-v~~l~~sp~~~-~l~s~ 354 (551)
.|+.||.. |+.+..+..+.+. ..-+.|..+|+ |+++.
T Consensus 497 ~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred cEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 99999999 9999888765432 24467778887 44444
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.12 E-value=3.6e-08 Score=94.90 Aligned_cols=207 Identities=14% Similarity=0.017 Sum_probs=129.7
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc--cccccEEEEEecCCCC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK--ECVAAITSVCWSKYGH 80 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~--~h~~~V~~l~~s~~g~ 80 (551)
|.+||+.++... . +.....+.+++|+++|+++++. .+ .|.+||..+++........ .....+.++.++|+|+
T Consensus 73 i~~~d~~~~~~~-~---~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~ 146 (326)
T 2ghs_A 73 LHELHLASGRKT-V---HALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA 146 (326)
T ss_dssp EEEEETTTTEEE-E---EECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC
T ss_pred EEEEECCCCcEE-E---EECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC
Confidence 445566555321 1 1234578999999999887764 44 4999999887754332211 1134689999999999
Q ss_pred EEEEEeCC----CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcC--CC-ceee--eccc
Q 008844 81 RILVSAAD----KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLS--TG-STSI--LPIA 151 (551)
Q Consensus 81 ~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~--~~-~~~~--~~~~ 151 (551)
++++...+ ....||.+.+++..........+..+.|+|++. .++++....+.|.+|++. ++ .... ....
T Consensus 147 l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~--~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~ 224 (326)
T 2ghs_A 147 LWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGT--TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID 224 (326)
T ss_dssp EEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSC--EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred EEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCC--EEEEEECCCCEEEEEEcccccCCcccCceEEEE
Confidence 77655421 233444443555443333223466788998763 245555667889999986 44 2110 0000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEe-eCCCE
Q 008844 152 VPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFS-RNGQY 230 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~ 230 (551)
.. .....+..++++++|++.++....+.|.+||. +++.+..+. .+...+++++|+ ++++.
T Consensus 225 ~~-----------------~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 225 ST-----------------GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp CT-----------------TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTSCE
T ss_pred CC-----------------CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEecCCCCE
Confidence 00 01115678999999987777666789999998 566666664 345579999998 88877
Q ss_pred EEEeeC
Q 008844 231 LLTNSN 236 (551)
Q Consensus 231 l~t~s~ 236 (551)
|++++.
T Consensus 286 L~vt~~ 291 (326)
T 2ghs_A 286 LLVTSA 291 (326)
T ss_dssp EEEEEB
T ss_pred EEEEec
Confidence 765544
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=2.2e-08 Score=97.68 Aligned_cols=195 Identities=9% Similarity=0.054 Sum_probs=129.1
Q ss_pred EEc--CCCCEEEEE-eCCCeEEEEeccCC----ceeeEeec-----ccccccEEEEEecCCCCEEEEEeCC------CCE
Q 008844 30 AFN--RRGTLLAAG-CSDGSCVIWDFETR----GIAKELRD-----KECVAAITSVCWSKYGHRILVSAAD------KSL 91 (551)
Q Consensus 30 ~fs--~dg~~latg-~~dg~I~iwd~~~~----~~~~~~~~-----~~h~~~V~~l~~s~~g~~l~s~s~d------g~i 91 (551)
.++ +++++|++. ..+++|.|+|+.+. ++.+++.. .........+..+|+| +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 788877765 45788999999765 56666630 0002345677889999 77766555 789
Q ss_pred EEEEcCCCeEEEEEEcCCC----eeEEEEecCCCCCcEEEEee-------------------CCCCcEEEEcCCCceeee
Q 008844 92 TLWDVLKGEKITRIVLQQT----PLQARLHPGSSTPSLCLACP-------------------LSSAPMIVDLSTGSTSIL 148 (551)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~-------------------~~~~i~i~d~~~~~~~~~ 148 (551)
.++|..+++.+.++..... .+.+.|+|++. .+++.. ...+|.+||+.+++....
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~---~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE---VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT---EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCC---EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 9999999999998874422 34577888764 566653 478999999998754332
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE--eeCCCEEEEEe------cCceEEEEECCCCcE--EEeeeccC---
Q 008844 149 PIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF--NKYGDLVYVGN------SKGEILVIDHKSNQI--RALVPVSG--- 215 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~g~~l~~g~------~dg~i~i~d~~~~~~--~~~~~~~~--- 215 (551)
+..... ......+.| +|+++++++++ .+++|.+|....+.. ...+....
T Consensus 244 -I~vg~~-----------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v 305 (462)
T 2ece_A 244 -LTLGEE-----------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL 305 (462)
T ss_dssp -EESCTT-----------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred -EecCCC-----------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence 111100 003444545 99999988887 466888776654432 11110000
Q ss_pred --------------ccceEEEEEeeCCCEEEEeeC-CCeEEEEeCc
Q 008844 216 --------------AAVIKNIVFSRNGQYLLTNSN-DRTIRIYDNL 246 (551)
Q Consensus 216 --------------~~~i~~l~~s~~g~~l~t~s~-Dg~i~iwd~~ 246 (551)
......|.+++||++|+++.. .+.|.+||+.
T Consensus 306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 245788999999999887766 7899999943
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=5.1e-11 Score=117.05 Aligned_cols=204 Identities=17% Similarity=0.139 Sum_probs=107.8
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeE
Q 008844 34 RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQ 113 (551)
Q Consensus 34 dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 113 (551)
++.+|++++.||.|+.||..+|+.+..+.. ..+.+..+..++..+++++.|+.|..||..+|+.+..+..+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 567889999999999999999998887764 3444555556777788778899999999988876554432210000
Q ss_pred EEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec
Q 008844 114 ARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS 193 (551)
Q Consensus 114 ~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~ 193 (551)
.. .++ +. .+..|++|+.
T Consensus 84 -----~~-----------------------------------------------------sp~----~~-~~~~v~~g~~ 100 (369)
T 2hz6_A 84 -----QA-----------------------------------------------------SPC----RS-SDGILYMGKK 100 (369)
T ss_dssp -----TT-----------------------------------------------------CSC----C------CCCCEE
T ss_pred -----cc-----------------------------------------------------Cce----Ee-cCCEEEEEeC
Confidence 00 000 01 2346778888
Q ss_pred CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeee
Q 008844 194 KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMK 273 (551)
Q Consensus 194 dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (551)
+|.|+.||..+++.+..+... . ...++|++..|++++.|+.|+.||...
T Consensus 101 dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~~~~dg~v~a~d~~t-------------------------- 149 (369)
T 2hz6_A 101 QDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYLGRTEYTITMYDTKT-------------------------- 149 (369)
T ss_dssp EEEEEEECCC---------------------------EEEEEEEEEEECCCSSS--------------------------
T ss_pred CCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEEEecCCEEEEEECCC--------------------------
Confidence 999999999999988776422 1 234567888899999999999999221
Q ss_pred eccceeeeeecccccccceeeeeeeEEcCCC---CEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEE-EEEecCC
Q 008844 274 MVGSKCLALFREFQDSITKMHWKAPCFSGDG---EWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALID-LAWHPVH 348 (551)
Q Consensus 274 ~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg---~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~-l~~sp~~ 348 (551)
++.+-.+.... +..++++++. ..+++++. +|.|+.||.. |+.+-.+.. ..++.. ..+++++
T Consensus 150 ---G~~~W~~~~~~-------~~~~~~~~~~~~~~~v~~~~~---dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 150 ---RELRWNATYFD-------YAASLPEDDVDYKMSHFVSNG---DGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREG 215 (369)
T ss_dssp ---SSCCCEEEEEE-------ECCBCCCCCTTCCCCEEEEET---SCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSS
T ss_pred ---CCEEEeEeccc-------ccCccccCCccccceEEEECC---CCEEEEEECCCCcEEEEecC-CCceEEEEEecCCc
Confidence 11111111100 1133444432 45667777 8999999998 888777663 334433 3444454
Q ss_pred C
Q 008844 349 P 349 (551)
Q Consensus 349 ~ 349 (551)
.
T Consensus 216 ~ 216 (369)
T 2hz6_A 216 L 216 (369)
T ss_dssp C
T ss_pred e
Confidence 3
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=7.3e-09 Score=99.80 Aligned_cols=282 Identities=13% Similarity=0.078 Sum_probs=169.0
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI 82 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l 82 (551)
|..|| .+++...... .+...+.++.+.++|.++ .++.+ |..||. +++.+..+... ........+. +..|
T Consensus 42 l~~~d-~~g~~~~~~~--~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~--~~~~~~~~~~--~~~l 110 (330)
T 3hxj_A 42 LYAIN-TDGSVKWFFK--SGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTK--KAIVSDFTIF--EDIL 110 (330)
T ss_dssp TEEEC-TTSCEEESSC--GGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC-------CCEEEE--TTEE
T ss_pred EEEEC-CCCcEEEEEe--cCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECC--CCcccCceEE--CCEE
Confidence 34556 5554322221 133456778887777644 44444 888886 56555444322 2222223333 4567
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEEEcCCCe-eEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCC
Q 008844 83 LVSAADKSLTLWDVLKGEKITRIVLQQTP-LQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAP 161 (551)
Q Consensus 83 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 161 (551)
+.++.++.|..+|.. ++........... ..+...+++ .++.+..++.+..++.. +....... ...
T Consensus 111 ~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g----~l~vgt~~~~l~~~d~~-g~~~~~~~-~~~------- 176 (330)
T 3hxj_A 111 YVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG----TIYVGSNDNYLYAINPD-GTEKWRFK-TND------- 176 (330)
T ss_dssp EEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS----CEEEECTTSEEEEECTT-SCEEEEEE-CSS-------
T ss_pred EEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC----EEEEEcCCCEEEEECCC-CCEeEEEe-cCC-------
Confidence 788888999999988 8877776654432 233343333 36667777899999988 55432211 100
Q ss_pred CCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEE
Q 008844 162 SSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIR 241 (551)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~ 241 (551)
..+.++.+.++|. |++++ +.|..|| .+++.+.... .....+.++...++|. |.+++.++.|.
T Consensus 177 ------------~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~-l~v~t~~~gl~ 238 (330)
T 3hxj_A 177 ------------AITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISEDGT-IYVTSLDGHLY 238 (330)
T ss_dssp ------------CCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTTSC-EEEEETTTEEE
T ss_pred ------------CceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEc-cCCcceeceEECCCCe-EEEEcCCCeEE
Confidence 1455566767776 55555 8899999 7777766654 3445677888888775 55566778888
Q ss_pred EEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEE
Q 008844 242 IYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYI 321 (551)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~i 321 (551)
.++. . +..+..+......+. .+.+.++|. |..++. +|.|+.
T Consensus 239 ~~~~-~-----------------------------g~~~~~~~~~~~~~~-----~~~~~~~g~-l~v~t~---~ggl~~ 279 (330)
T 3hxj_A 239 AINP-D-----------------------------GTEKWRFKTGKRIES-----SPVIGNTDT-IYFGSY---DGHLYA 279 (330)
T ss_dssp EECT-T-----------------------------SCEEEEEECSSCCCS-----CCEECTTSC-EEEECT---TCEEEE
T ss_pred EECC-C-----------------------------CCEeEEeeCCCCccc-----cceEcCCCe-EEEecC---CCCEEE
Confidence 8871 1 111112221111122 455665664 556666 678999
Q ss_pred EecCCceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 322 WDRAGYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 322 wd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+|..++.+..+......+.++...+++. |..++.+|.+++.....
T Consensus 280 ~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 280 INPDGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp ECTTSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred ECCCCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 9966777777766666677888877776 45577799999877654
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=1.9e-08 Score=101.60 Aligned_cols=203 Identities=10% Similarity=-0.029 Sum_probs=130.6
Q ss_pred CCCCEEEEEeC-CCeEEEEeccCCceeeEeecccccccEEEEEe-c-CCCCEEEEEe------------------CCCCE
Q 008844 33 RRGTLLAAGCS-DGSCVIWDFETRGIAKELRDKECVAAITSVCW-S-KYGHRILVSA------------------ADKSL 91 (551)
Q Consensus 33 ~dg~~latg~~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~-s-~~g~~l~s~s------------------~dg~i 91 (551)
+||++|++... ++.|.+.|+.+.++...+... ....+..+++ + |++.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 38888887665 467999999999988866432 1356888888 5 8999999885 24679
Q ss_pred EEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC--------------CcEEEEcCCC-------ceeee-c
Q 008844 92 TLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS--------------APMIVDLSTG-------STSIL-P 149 (551)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------------~i~i~d~~~~-------~~~~~-~ 149 (551)
.++|..+.+.+.++.....+..+.++|++. ..++++.... .+.+.+.... +.... .
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk--~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGK--WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSS--EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCC--EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 999999999999988766778888998764 2444443331 2333333211 00000 0
Q ss_pred cccCCCCCCCCCCCCCC-CCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCCCc------------EEEeeeccC
Q 008844 150 IAVPDVANGIAPSSRNK-YSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQ------------IRALVPVSG 215 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~------------~~~~~~~~~ 215 (551)
+..-+.... .... .........+.++.++|||+++++++ .+.+|.++|+.+.+ ....+ .-
T Consensus 256 V~VID~~~~----~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~v 329 (595)
T 1fwx_A 256 VKVVDGRKE----ASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--EL 329 (595)
T ss_dssp EEEEECSGG----GCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BC
T ss_pred EEEEeCccc----CCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CC
Confidence 000000000 0000 00000111567899999999888776 57899999999763 34444 33
Q ss_pred ccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 216 AAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 216 ~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
......++|+++|...++.-.|+.|.+|+
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWN 358 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence 45678899999994445566799999999
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.07 E-value=5.9e-07 Score=83.59 Aligned_cols=250 Identities=12% Similarity=0.049 Sum_probs=151.3
Q ss_pred CCEEEEEeCCCeEEEEeccCCcee-----eEeecccccccEEEEEecCCCCEEEEEe-CCCCEEEEEcCCCeEEEEEEcC
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIA-----KELRDKECVAAITSVCWSKYGHRILVSA-ADKSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~-----~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~ 108 (551)
|.+|+.+.. +.|+.+++...... ..+... ...+.+++|++++..|+.+. ..+.|.++++..+.....+...
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~--~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 77 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIP--AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD 77 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEE--EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCC--CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC
Confidence 345555553 57888888754321 122211 34678999999766666554 4789999998765443333222
Q ss_pred -CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCE
Q 008844 109 -QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDL 187 (551)
Q Consensus 109 -~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 187 (551)
..+..+.+.|.+ ..++++....+.|.++++.......+... . ...+..++++|++..
T Consensus 78 ~~~p~~ia~d~~~--~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~------------------~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 78 LGSPEGIALDHLG--RTIFWTDSQLDRIEVAKMDGTQRRVLFDT--G------------------LVNPRGIVTDPVRGN 135 (267)
T ss_dssp CCCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECS--S------------------CSSEEEEEEETTTTE
T ss_pred CCCccEEEEEecC--CeEEEEECCCCEEEEEEcCCCCEEEEEEC--C------------------CCCccEEEEeeCCCE
Confidence 467788888754 23666666677888888865433221100 0 015688999997766
Q ss_pred EEEEec---CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEeCcCCccccchhhhhhhccC
Q 008844 188 VYVGNS---KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYDNLLPLKNGLEALVDIEKGI 263 (551)
Q Consensus 188 l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (551)
|+++.. .+.|..+++.......... ........+++++++..|+.+ ...+.|.+++...
T Consensus 136 lyv~~~~~~~~~I~~~~~dg~~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g---------------- 198 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ---------------- 198 (267)
T ss_dssp EEEEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE----------------
T ss_pred EEEEECCCCCcEEEEEecCCCCcEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC----------------
Confidence 666654 4789899886543222221 233467889999987766554 4568899998210
Q ss_pred CCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC-CceEE
Q 008844 264 AEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK-EALID 341 (551)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~-~~v~~ 341 (551)
............+ . .+++ ++.+|+.+... .+.|++++.. ++.+..+.... .....
T Consensus 199 -------------~~~~~~~~~~~~P-~-----gi~~--d~~~lyva~~~--~~~v~~~d~~~g~~~~~i~~g~~~~p~g 255 (267)
T 1npe_A 199 -------------PGRRKVLEGLQYP-F-----AVTS--YGKNLYYTDWK--TNSVIAMDLAISKEMDTFHPHKQTRLYG 255 (267)
T ss_dssp -------------EEEEEEEECCCSE-E-----EEEE--ETTEEEEEETT--TTEEEEEETTTTEEEEEECCSSCCCCCC
T ss_pred -------------CceEEEecCCCCc-e-----EEEE--eCCEEEEEECC--CCeEEEEeCCCCCceEEEccccccccce
Confidence 1111111111111 1 4454 35666666542 5889999998 88888886433 24778
Q ss_pred EEEecCCC
Q 008844 342 LAWHPVHP 349 (551)
Q Consensus 342 l~~sp~~~ 349 (551)
|++.|++.
T Consensus 256 i~~~~~~~ 263 (267)
T 1npe_A 256 ITIALSQC 263 (267)
T ss_dssp EEEECSCC
T ss_pred eeecCccC
Confidence 88888764
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.06 E-value=3.9e-08 Score=99.30 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=97.4
Q ss_pred CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC---------------eEEEEeCcCCccccchhhhh
Q 008844 194 KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR---------------TIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 194 dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg---------------~i~iwd~~~~~~~~~~~~~~ 258 (551)
++.+.++|..+.+...++.... ....++++|+|+++++++.+. .|.+++.- .. ...+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~--~~--~~~v~- 246 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA--EI--EKAIA- 246 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH--HH--HHHHH-
T ss_pred CceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc--ce--eEecc-
Confidence 5689999999999988886533 456788999999999988653 46677611 00 00000
Q ss_pred hhccCCCCCcceeeeecc--cee-eeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc-------
Q 008844 259 IEKGIAEPNGIEKMKMVG--SKC-LALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY------- 327 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~------- 327 (551)
.+.......+..+.... ... +..+..- .....+.++|||+++++++.. ...|.++|+. .+
T Consensus 247 -~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg------~~PhGv~~sPDGk~v~V~~~~--s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 247 -AGDYQELNGVKVVDGRKEASSLFTRYIPIA------NNPHGCNMAPDKKHLCVAGKL--SPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp -HTCSEEETTEEEEECSGGGCCSSEEEEEEE------SSCCCEEECTTSSEEEEECTT--SSBEEEEEGGGHHHHHHSCC
T ss_pred -CCCeeEECcEEEEeCcccCCceeEEEEecC------CCceEEEEcCCCCEEEEeCCC--CCeEEEEECccccccccccc
Confidence 01011112222222222 111 1111111 112378999999999888763 7899999998 32
Q ss_pred -----eeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 328 -----LVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 328 -----~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.+..+. -......++|+|+|...++.-.|+.|.+|+++.
T Consensus 318 ~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 318 DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 233333 234678999999994444555699999999986
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.06 E-value=1.7e-08 Score=96.17 Aligned_cols=194 Identities=11% Similarity=0.068 Sum_probs=124.5
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc--cccccEEEEEecCCCCEEEE----EeC--------
Q 008844 22 EHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK--ECVAAITSVCWSKYGHRILV----SAA-------- 87 (551)
Q Consensus 22 h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~--~h~~~V~~l~~s~~g~~l~s----~s~-------- 87 (551)
+...+.+++++++|+++++...++.|.+|+.. ++........ .....+..+++.++|+++++ |..
T Consensus 84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence 44668999999999977776666889999986 5533222111 01234678999999998886 332
Q ss_pred -----CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCC------CCcEEEEcCCCceeeeccccCCCC
Q 008844 88 -----DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLS------SAPMIVDLSTGSTSILPIAVPDVA 156 (551)
Q Consensus 88 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~~~~~~~~~ 156 (551)
.+.|..||..+++..... ....+..++|+|++. .++.+... +.|.+|++..+......... ..
T Consensus 163 ~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~---~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~-~~- 236 (305)
T 3dr2_A 163 DPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQ---TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA-SV- 236 (305)
T ss_dssp CCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSS---EEEEEECCC---CCCEEEEEEEETTEEEEEEEEE-CC-
T ss_pred ccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCC---EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE-EC-
Confidence 245777777667654433 334567889999864 34443333 67889998765421110000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN 236 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~ 236 (551)
....+..++++++|+ |.+++.+ .|.+|+. .++.+..+... ..+.+++|+++++.|++++.
T Consensus 237 ---------------~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~--~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 237 ---------------PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTP--GTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp ---------------SSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECS--SCCCEEEECTTSCEEEEEET
T ss_pred ---------------CCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECC--CceeEEEEeCCCCEEEEEcC
Confidence 011456789999999 5555544 5999998 56666666422 25889999999988888877
Q ss_pred CCeEEE
Q 008844 237 DRTIRI 242 (551)
Q Consensus 237 Dg~i~i 242 (551)
++..++
T Consensus 297 ~~l~~~ 302 (305)
T 3dr2_A 297 PCLWML 302 (305)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 654443
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.05 E-value=1.3e-07 Score=86.70 Aligned_cols=209 Identities=12% Similarity=0.077 Sum_probs=132.7
Q ss_pred ceeeEeecccccccEEEEEecCCCCEEEEEeC--CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCC
Q 008844 56 GIAKELRDKECVAAITSVCWSKYGHRILVSAA--DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSS 133 (551)
Q Consensus 56 ~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 133 (551)
+.+.++. |+.......|.|++++.++++.+. ++.|.++|+.+++.+..+......
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~---------------------- 66 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY---------------------- 66 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC----------------------
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc----------------------
Confidence 4455553 221234689999998755555443 679999999999988887643321
Q ss_pred CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCCCcEEEeee
Q 008844 134 APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQIRALVP 212 (551)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~ 212 (551)
....+++ +++.|++++ .++.+.++|..+.+.+..++
T Consensus 67 -----------------------------------------fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~~v~~~i~ 103 (266)
T 2iwa_A 67 -----------------------------------------FGEGLTL--LNEKLYQVVWLKNIGFIYDRRTLSNIKNFT 103 (266)
T ss_dssp -----------------------------------------CEEEEEE--ETTEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred -----------------------------------------ceEEEEE--eCCEEEEEEecCCEEEEEECCCCcEEEEEE
Confidence 1112333 344555544 57899999999999998886
Q ss_pred ccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc--cccc
Q 008844 213 VSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF--QDSI 290 (551)
Q Consensus 213 ~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v 290 (551)
.+ ... ...++++|+.|+++..++.|.++|... .+.+..+.-- ...+
T Consensus 104 ~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t-----------------------------~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 104 HQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHT-----------------------------FKLIKKHNVKYNGHRV 151 (266)
T ss_dssp CC-SSS--CCEEEECSSSEEEECSSSEEEEECTTT-----------------------------CCEEEEEECEETTEEC
T ss_pred CC-CCC--eEEEEECCCEEEEECCCCeEEEEECCC-----------------------------CcEEEEEEECCCCccc
Confidence 44 111 244667888887777789999999211 1111111111 0111
Q ss_pred ceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCC-------------CceEEEEEecCCC-eEEEEc
Q 008844 291 TKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPK-------------EALIDLAWHPVHP-IIVSVS 355 (551)
Q Consensus 291 ~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~-------------~~v~~l~~sp~~~-~l~s~s 355 (551)
. ..+.+.|. +|+ |.+.... .+.|.+.|.. ++.+..+.... ...+.|+|+|+++ +++++.
T Consensus 152 ~--~~nele~~-dg~-lyvn~~~--~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 152 I--RLNELEYI-NGE-VWANIWQ--TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp C--CEEEEEEE-TTE-EEEEETT--SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred c--cceeEEEE-CCE-EEEecCC--CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 0 11256676 664 4444432 6799999999 99888886421 2568999999987 555565
Q ss_pred CCCcEEEEecCCC
Q 008844 356 LTGWVYIWAKDYT 368 (551)
Q Consensus 356 ~dg~i~iW~~~~~ 368 (551)
..+.|++.++...
T Consensus 226 ~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 226 LWPKLFEIKLHLV 238 (266)
T ss_dssp TCSEEEEEEEEEC
T ss_pred CCCeEEEEEEecc
Confidence 6888988887653
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.05 E-value=6.9e-08 Score=88.50 Aligned_cols=206 Identities=11% Similarity=0.022 Sum_probs=138.1
Q ss_pred ceeecccccce--EEEEEEcCCCCEEEEEeC--CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe-CCC
Q 008844 15 EVIEEYLEHGV--MKCIAFNRRGTLLAAGCS--DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA-ADK 89 (551)
Q Consensus 15 ~~l~~~~h~~~--V~~l~fs~dg~~latg~~--dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg 89 (551)
+++..+.|... ...++|+++|.+.++.+. ++.|.++|+.+++.+..+....+ .....+++. +..|+.+. .++
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCC
Confidence 45555556543 578999998755554443 57999999999999988764321 122345554 44555554 488
Q ss_pred CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeee-ccccCCCCCCCCCCCCCCCC
Q 008844 90 SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL-PIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (551)
.+.++|..+++.+.++... ......+.+++. .++++ ..++.+.++|..+.+.... .+.....
T Consensus 87 ~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~--~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~------------- 149 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGK--ILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGH------------- 149 (266)
T ss_dssp EEEEEETTTTEEEEEEECC-SSSCCEEEECSS--SEEEE-CSSSEEEEECTTTCCEEEEEECEETTE-------------
T ss_pred EEEEEECCCCcEEEEEECC-CCCeEEEEECCC--EEEEE-CCCCeEEEEECCCCcEEEEEEECCCCc-------------
Confidence 9999999999999998766 223344566653 34444 4688999999988764432 2111100
Q ss_pred CCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccC------------ccceEEEEEeeCCCE-EEEee
Q 008844 169 DGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG------------AAVIKNIVFSRNGQY-LLTNS 235 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~l~~s~~g~~-l~t~s 235 (551)
.-..++.+.|. +|...+.....+.|.+.|..+++.+..+.... ......|+|+|+++. ++++.
T Consensus 150 ---p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 150 ---RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp ---ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred ---ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 00135677887 66544444467899999999999988886431 135689999999865 55566
Q ss_pred CCCeEEEEe
Q 008844 236 NDRTIRIYD 244 (551)
Q Consensus 236 ~Dg~i~iwd 244 (551)
..+.|.+.+
T Consensus 226 ~~~~v~~i~ 234 (266)
T 2iwa_A 226 LWPKLFEIK 234 (266)
T ss_dssp TCSEEEEEE
T ss_pred CCCeEEEEE
Confidence 788898888
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=8.7e-08 Score=101.45 Aligned_cols=327 Identities=13% Similarity=0.111 Sum_probs=184.4
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccc--------cE-EEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVA--------AI-TSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~--------~V-~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
+..|++++.++.|.-+|..+|+.+..+....... .+ ..+++ .+..|++++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4567777788999999999999888775431000 00 11222 2457888888999999999999999988
Q ss_pred EcCCCe--eEEEEecCCCCCcEEEEeeC------CCCcEEEEcCCCceeeeccccCCCCCCCCCCC-----CCCC-----
Q 008844 106 VLQQTP--LQARLHPGSSTPSLCLACPL------SSAPMIVDLSTGSTSILPIAVPDVANGIAPSS-----RNKY----- 167 (551)
Q Consensus 106 ~~~~~~--~~~~~~p~~~~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----- 167 (551)
...... ..+...|.-... .++++.. ++.+..+|..+++................... ....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred ccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 764210 000001100011 3444432 57899999999987654322111000000000 0000
Q ss_pred -CCCCCCCCceEEEEeeCCCEEEEEecCce-------------------EEEEECCCCcEEEeeeccC-c-------cce
Q 008844 168 -SDGTPPFTPTAACFNKYGDLVYVGNSKGE-------------------ILVIDHKSNQIRALVPVSG-A-------AVI 219 (551)
Q Consensus 168 -~~~~~~~~i~~~~~s~~g~~l~~g~~dg~-------------------i~i~d~~~~~~~~~~~~~~-~-------~~i 219 (551)
...........+++++.+.++++++.++. |..+|..+++.+..++..+ . .+.
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 00001112345789998889999987764 9999999999988876432 1 233
Q ss_pred EEEEEeeCCC---EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeee---------eecccc
Q 008844 220 KNIVFSRNGQ---YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLA---------LFREFQ 287 (551)
Q Consensus 220 ~~l~~s~~g~---~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 287 (551)
....+..+|+ .|++++.+|.++++|..... .+....... ..-...+.......+. ......
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-----~l~~~~~~~--~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK-----LISAEKFGK--VTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCC-----EEEEEESSC--CCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCC-----Eeccccccc--cccccccccccCCccccccccccCCeeEECC
Confidence 3333445675 68899999999999932211 110000000 0000000000000000 000011
Q ss_pred cccceeeeeeeEEcCCCCEEEEeec---------------------------------cCCcceEEEEecC-CceeEEEe
Q 008844 288 DSITKMHWKAPCFSGDGEWVIAGSA---------------------------------SKGEHKIYIWDRA-GYLVKILE 333 (551)
Q Consensus 288 ~~v~~~~~~~~~~s~dg~~l~~gs~---------------------------------~~~dg~I~iwd~~-~~~~~~l~ 333 (551)
...-...|..++++|+...++.... ...+|.|+.||+. |+.+-.+.
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~ 455 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence 1111224556788888776664211 0014889999999 88877766
Q ss_pred cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcce
Q 008844 334 GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 334 ~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~ 372 (551)
.+ .++....+...+.+|++++.||.|++||..+++..-
T Consensus 456 ~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 456 YP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp ES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 43 334444555678889999999999999999887543
No 239
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.02 E-value=1.2e-06 Score=83.23 Aligned_cols=239 Identities=12% Similarity=0.044 Sum_probs=138.2
Q ss_pred ceeecccccceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC--CEE
Q 008844 15 EVIEEYLEHGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK--SLT 92 (551)
Q Consensus 15 ~~l~~~~h~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg--~i~ 92 (551)
+++..+........++|+++|+++++-..++.|..||..+ .....+.. ...+..|++.++|+++++..... .|.
T Consensus 23 ~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 23 KIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred eEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3444443335578899999999777776789999999875 34333332 35688999999999666554332 366
Q ss_pred EEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 93 LWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
.++..+++.......... .
T Consensus 99 ~~d~~~g~~~~~~~~~~~----------~--------------------------------------------------- 117 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDA----------I--------------------------------------------------- 117 (306)
T ss_dssp EEECTTSCEEEEEECTTC----------S---------------------------------------------------
T ss_pred EEcCCCCeEEEEEeCCCc----------c---------------------------------------------------
Confidence 666666654322221100 0
Q ss_pred CCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE-EEeee--------ccCccceEEEEEeeCCCEEEEe-eCCCeEEE
Q 008844 173 PFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI-RALVP--------VSGAAVIKNIVFSRNGQYLLTN-SNDRTIRI 242 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~--------~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~i 242 (551)
....++..+.+..+++-...|.|+++|..++.. +.... ...-.....| ++++++|+++ +..+.|..
T Consensus 118 --~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~ 193 (306)
T 2p4o_A 118 --FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLR 193 (306)
T ss_dssp --CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEE
T ss_pred --ccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEE
Confidence 122333333333333333578888888876532 11100 0111234555 8888766554 55788999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
|++... .. ......+... ... ..++++++|++.++... .+.|.++
T Consensus 194 ~~~~~~--g~------------------------~~~~~~~~~~-~~P-----~gi~vd~dG~l~va~~~---~~~V~~~ 238 (306)
T 2p4o_A 194 IPVDST--DK------------------------PGEPEIFVEQ-TNI-----DDFAFDVEGNLYGATHI---YNSVVRI 238 (306)
T ss_dssp EEBCTT--SC------------------------BCCCEEEEES-CCC-----SSEEEBTTCCEEEECBT---TCCEEEE
T ss_pred EEeCCC--CC------------------------CCccEEEecc-CCC-----CCeEECCCCCEEEEeCC---CCeEEEE
Confidence 982110 00 0000111111 111 27899999987766665 6889999
Q ss_pred ecCCceeE--EEecCCCceEEEEEe---cCCCeEEEEcCC
Q 008844 323 DRAGYLVK--ILEGPKEALIDLAWH---PVHPIIVSVSLT 357 (551)
Q Consensus 323 d~~~~~~~--~l~~h~~~v~~l~~s---p~~~~l~s~s~d 357 (551)
+..|+... .+.......++++|. |++..|+.++..
T Consensus 239 ~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 239 APDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 98776533 233333568999998 887766665543
No 240
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.01 E-value=3.8e-08 Score=105.15 Aligned_cols=218 Identities=12% Similarity=0.106 Sum_probs=129.5
Q ss_pred CccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCCC-------------eEEEEeccCCce--eeEeeccc-
Q 008844 2 NAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSDG-------------SCVIWDFETRGI--AKELRDKE- 65 (551)
Q Consensus 2 nl~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~dg-------------~I~iwd~~~~~~--~~~~~~~~- 65 (551)
.|+|||..+++.... ..+......++|+ ||+.|+.++.+. .|++|++.++.. ...+....
T Consensus 156 ~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~ 231 (693)
T 3iuj_A 156 EIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA 231 (693)
T ss_dssp EEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG
T ss_pred EEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC
Confidence 367889988875332 1111223678999 999999888774 399999987653 23333332
Q ss_pred ccccEEEEEecCCCCEEEEEeC----CCCEEEEEcCCCe-EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEc
Q 008844 66 CVAAITSVCWSKYGHRILVSAA----DKSLTLWDVLKGE-KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDL 140 (551)
Q Consensus 66 h~~~V~~l~~s~~g~~l~s~s~----dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~ 140 (551)
|...+.++.|+|||++|+.... ...|.+||+.++. ....+..+..
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~------------------------------ 281 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD------------------------------ 281 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS------------------------------
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC------------------------------
Confidence 3456789999999998865442 2478888886653 1222221111
Q ss_pred CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-c---CceEEEEECCCCcE---EEeeec
Q 008844 141 STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-S---KGEILVIDHKSNQI---RALVPV 213 (551)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~---dg~i~i~d~~~~~~---~~~~~~ 213 (551)
..... ++++|..|+..+ . .+.|.++++.++.. ...+
T Consensus 282 ----------------------------------~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-- 324 (693)
T 3iuj_A 282 ----------------------------------ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-- 324 (693)
T ss_dssp ----------------------------------SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--
T ss_pred ----------------------------------ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--
Confidence 12222 556665555443 3 36899999988654 3333
Q ss_pred cCccceEEEEEeeCCCEEEEeeC-CC--eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeec-ccccc
Q 008844 214 SGAAVIKNIVFSRNGQYLLTNSN-DR--TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFR-EFQDS 289 (551)
Q Consensus 214 ~~~~~i~~l~~s~~g~~l~t~s~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 289 (551)
.+...+. .|++++++|+.... ++ .|++|++. +.. ...+. .....
T Consensus 325 ~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~-----------------------------g~~-~~~l~~p~~~~ 372 (693)
T 3iuj_A 325 PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE-----------------------------GKR-VREVALPGLGS 372 (693)
T ss_dssp CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT-----------------------------SCE-EEEECCSSSSE
T ss_pred cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC-----------------------------CCe-eEEeecCCCce
Confidence 4444444 89999998877765 44 57788721 111 11111 11122
Q ss_pred cceeeeeeeEEcCCCCEEEEeecc-CCcceEEEEecC-Cc
Q 008844 290 ITKMHWKAPCFSGDGEWVIAGSAS-KGEHKIYIWDRA-GY 327 (551)
Q Consensus 290 v~~~~~~~~~~s~dg~~l~~gs~~-~~dg~I~iwd~~-~~ 327 (551)
+. .+.+++++..|+....+ ..-+.|+.||+. ++
T Consensus 373 ~~-----~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 373 VS-----GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EE-----ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EE-----eeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 22 55667888877665441 113789999988 54
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.00 E-value=5e-09 Score=101.76 Aligned_cols=183 Identities=8% Similarity=0.058 Sum_probs=115.7
Q ss_pred cceEEEEEEcCCCCEEEEEeC-----CCeEEEEeccCCceeeEeecc----cccccEEEEEecCCCCEE-EEEe---CCC
Q 008844 23 HGVMKCIAFNRRGTLLAAGCS-----DGSCVIWDFETRGIAKELRDK----ECVAAITSVCWSKYGHRI-LVSA---ADK 89 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~-----dg~I~iwd~~~~~~~~~~~~~----~h~~~V~~l~~s~~g~~l-~s~s---~dg 89 (551)
-..+.+++|+++|+++++-.. ++.|.+||+.+++.+..+... .+...+..+++++++..+ ++.. .++
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~ 145 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA 145 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence 367899999999987776543 578999999999877776542 123456899999865454 4444 578
Q ss_pred CEEEEEcCCCeEEEEEEcCCCee--EEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCC
Q 008844 90 SLTLWDVLKGEKITRIVLQQTPL--QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKY 167 (551)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (551)
.|.+||+.+++....+..+.... ...+.+++. .+.....++.+..|.
T Consensus 146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~---~~~~~~~~g~~~~~~---------------------------- 194 (343)
T 2qe8_A 146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV---PVQIGQPDGTVIRPH---------------------------- 194 (343)
T ss_dssp EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE---ECBEECTTSCEECCC----------------------------
T ss_pred eEEEEECCCCCEEEEecCCCcccccccceeECCE---EEEeccCCCceecee----------------------------
Confidence 99999999887655543321100 011112110 111122222222111
Q ss_pred CCCCCCCCceEEEEeeCCCEEEEEecCc-eEEEEECC---CCc-----E---EEeeeccCccceEEEEEeeCCCEEEEee
Q 008844 168 SDGTPPFTPTAACFNKYGDLVYVGNSKG-EILVIDHK---SNQ-----I---RALVPVSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 168 ~~~~~~~~i~~~~~s~~g~~l~~g~~dg-~i~i~d~~---~~~-----~---~~~~~~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
..+..++|+|+|+.|+++...+ .|..++.. .+. . +... .+......++++++|.++++..
T Consensus 195 ------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~~g~pdgia~d~~G~l~va~~ 266 (343)
T 2qe8_A 195 ------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY--SEKPICDGISIDKDHNIYVGDL 266 (343)
T ss_dssp ------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE--EECCSCSCEEECTTCCEEEEEG
T ss_pred ------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec--ccCCCCceEEECCCCCEEEEcc
Confidence 1567899999999888887665 66666532 111 0 0111 2233556799999999999888
Q ss_pred CCCeEEEEe
Q 008844 236 NDRTIRIYD 244 (551)
Q Consensus 236 ~Dg~i~iwd 244 (551)
.++.|.+|+
T Consensus 267 ~~~~V~~~d 275 (343)
T 2qe8_A 267 AHSAIGVIT 275 (343)
T ss_dssp GGTEEEEEE
T ss_pred CCCeEEEEE
Confidence 899999999
No 242
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.98 E-value=2.4e-07 Score=88.96 Aligned_cols=245 Identities=13% Similarity=0.147 Sum_probs=143.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc------------------cccccEEEEEecC-CCCEEEEE
Q 008844 25 VMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK------------------ECVAAITSVCWSK-YGHRILVS 85 (551)
Q Consensus 25 ~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~------------------~h~~~V~~l~~s~-~g~~l~s~ 85 (551)
...+++|+++|++|+++..++.|..|+..++... .+... .....+..|++.+ +++ |+.+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 3567889999998888888999999998765543 22210 0013578999997 554 5555
Q ss_pred eCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCC
Q 008844 86 AADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRN 165 (551)
Q Consensus 86 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (551)
...+.|..+|..++. +..+...... . +
T Consensus 98 d~~~~i~~~d~~~g~-~~~~~~~~~~--~---~----------------------------------------------- 124 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGH-ATQLATSVDG--V---P----------------------------------------------- 124 (322)
T ss_dssp ETTTEEEEECTTCEE-CEEEESEETT--E---E-----------------------------------------------
T ss_pred ECCCCEEEEeCCCCE-EEEecccCCC--C---c-----------------------------------------------
Confidence 545558888865443 2222110000 0 0
Q ss_pred CCCCCCCCCCceEEEEee-CCCEEEEEe-----------------cCceEEEEECCCCcEEEeeeccCccceEEEEEeeC
Q 008844 166 KYSDGTPPFTPTAACFNK-YGDLVYVGN-----------------SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN 227 (551)
Q Consensus 166 ~~~~~~~~~~i~~~~~s~-~g~~l~~g~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~ 227 (551)
...+..+++.+ +|++.++-. ..|.|..||..+++..... ........|+|+++
T Consensus 125 -------~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~p~gia~~~d 195 (322)
T 2fp8_A 125 -------FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL--KELHVPGGAEVSAD 195 (322)
T ss_dssp -------CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE--EEESCCCEEEECTT
T ss_pred -------ccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec--cCCccCcceEECCC
Confidence 00344566666 665444322 2477899998777654332 12234467999999
Q ss_pred CCEEEEe-eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCE
Q 008844 228 GQYLLTN-SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEW 306 (551)
Q Consensus 228 g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~ 306 (551)
|++|+++ +..+.|.+|++.... ......+..... . ..+++.++|++
T Consensus 196 g~~lyv~d~~~~~I~~~~~~~~~---------------------------~~~~~~~~~~~g-P-----~gi~~d~~G~l 242 (322)
T 2fp8_A 196 SSFVLVAEFLSHQIVKYWLEGPK---------------------------KGTAEVLVKIPN-P-----GNIKRNADGHF 242 (322)
T ss_dssp SSEEEEEEGGGTEEEEEESSSTT---------------------------TTCEEEEEECSS-E-----EEEEECTTSCE
T ss_pred CCEEEEEeCCCCeEEEEECCCCc---------------------------CCccceEEeCCC-C-----CCeEECCCCCE
Confidence 9866655 556889999832110 000111111111 1 27899999986
Q ss_pred EEEeecc-------CCcceEEEEecCCceeEEEecCC----CceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 307 VIAGSAS-------KGEHKIYIWDRAGYLVKILEGPK----EALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 307 l~~gs~~-------~~dg~I~iwd~~~~~~~~l~~h~----~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
.++.... ...+.|..++..|+.+..+.... ..++.+++ .++.++++....+.|.++++..
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 6654320 00256888887788888776543 34677776 4565555555688899988764
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=6.4e-07 Score=92.83 Aligned_cols=324 Identities=11% Similarity=0.035 Sum_probs=175.4
Q ss_pred CCEEEEEeC-CCeEEEEec-cCCceeeEeecccccc--------cE-EEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 008844 35 GTLLAAGCS-DGSCVIWDF-ETRGIAKELRDKECVA--------AI-TSVCWSKYGHRILVSAADKSLTLWDVLKGEKIT 103 (551)
Q Consensus 35 g~~latg~~-dg~I~iwd~-~~~~~~~~~~~~~h~~--------~V-~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~ 103 (551)
+..|++++. ++.|.-+|. .+|+.+..+....... .+ ..++. .+..|+.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666777 889999999 8999887765431100 00 11222 25578888889999999999999998
Q ss_pred EEEcCCCe--eEEEEecCCCCCcEEEEeeC------CCCcEEEEcCCCceeeeccccCCCCCC-CCCC------------
Q 008844 104 RIVLQQTP--LQARLHPGSSTPSLCLACPL------SSAPMIVDLSTGSTSILPIAVPDVANG-IAPS------------ 162 (551)
Q Consensus 104 ~~~~~~~~--~~~~~~p~~~~~~~~~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~------------ 162 (551)
.+...... ..+...|.-... .++++.. ++.+..+|..+++.............. ..+.
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 88754310 001001100012 3444443 789999999999876433221110000 0000
Q ss_pred ------CCCCCCCCCCCCCceEEEEeeCCCEEEEEecC----------------ceEEEEECCCCcEEEeeeccCc----
Q 008844 163 ------SRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK----------------GEILVIDHKSNQIRALVPVSGA---- 216 (551)
Q Consensus 163 ------~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d----------------g~i~i~d~~~~~~~~~~~~~~~---- 216 (551)
....... ........+++.+....+++++.+ +.|..+|..+++.+..++..+.
T Consensus 219 ~g~~~w~~~~~~~-gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 219 LGTKTWEGDAWKI-GGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp HHHHTSSTTGGGG-CCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred cccccCcccceec-CCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0000000 000011346677777778777643 3699999999999887754321
Q ss_pred -----cceEEEEEeeCCC---EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeee------
Q 008844 217 -----AVIKNIVFSRNGQ---YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLAL------ 282 (551)
Q Consensus 217 -----~~i~~l~~s~~g~---~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 282 (551)
.++. +....+|+ .++.++.+|.+.++|..... .+....... .......+....+..+..
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-----~~w~~~~~~-~~~w~~~~d~~~g~p~~~~~~~~~ 370 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN-----LIVAEKVDP-AVNVFKKVDLKTGTPVRDPEFATR 370 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC-----EEEEEESST-TCCSEEEECTTTCSEEECGGGCCC
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC-----EEeeecccC-CccccccccccCCceecccccCCC
Confidence 2221 22234674 57778889999999932211 110000000 000000000000000000
Q ss_pred -----ecccccccceeeeeeeEEcCCCCEEEEeecc----------------------------------CCcceEEEEe
Q 008844 283 -----FREFQDSITKMHWKAPCFSGDGEWVIAGSAS----------------------------------KGEHKIYIWD 323 (551)
Q Consensus 283 -----~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~----------------------------------~~dg~I~iwd 323 (551)
........-...|..++|+|+..+|++...+ ...+.|+.||
T Consensus 371 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D 450 (571)
T 2ad6_A 371 MDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFD 450 (571)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEEC
T ss_pred CCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEE
Confidence 0000011112235578899988877766431 0158899999
Q ss_pred cC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 324 RA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 324 ~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
.. |+.+-.+... ..+....+...+..|+.++.||.|++||..+++.
T Consensus 451 ~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 451 LTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp TTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 98 8877766532 2333333344566777788999999999998874
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.94 E-value=4.6e-07 Score=81.93 Aligned_cols=194 Identities=16% Similarity=0.195 Sum_probs=123.1
Q ss_pred eeeEeecccccccEEEEEecCCCCEEEEEeCCC--CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCC
Q 008844 57 IAKELRDKECVAAITSVCWSKYGHRILVSAADK--SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSA 134 (551)
Q Consensus 57 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 134 (551)
++.++. |....-...|.|+ ++.++.+.+.+| .|+++|+.+|+.+..+.......
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F---------------------- 88 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF---------------------- 88 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC----------------------
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc----------------------
Confidence 445552 3334456889998 677677777665 89999999999988887543221
Q ss_pred cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-cCceEEEEECCCCcEEEeeec
Q 008844 135 PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQIRALVPV 213 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~ 213 (551)
...+.+.++.|+..+ .++.+.+||..+.+.+..++.
T Consensus 89 -------------------------------------------geGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~ 125 (262)
T 3nol_A 89 -------------------------------------------GEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY 125 (262)
T ss_dssp -------------------------------------------EEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred -------------------------------------------eeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence 111222344555544 588999999999999999875
Q ss_pred cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeeccc--ccccc
Q 008844 214 SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREF--QDSIT 291 (551)
Q Consensus 214 ~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 291 (551)
... ...++++++.|+.+..++.|.++|... .+.+..+.-. ...+.
T Consensus 126 ~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T-----------------------------~~v~~~I~V~~~g~~~~ 172 (262)
T 3nol_A 126 DGE----GWGLTHNDQYLIMSDGTPVLRFLDPES-----------------------------LTPVRTITVTAHGEELP 172 (262)
T ss_dssp SSC----CCCEEECSSCEEECCSSSEEEEECTTT-----------------------------CSEEEEEECEETTEECC
T ss_pred CCC----ceEEecCCCEEEEECCCCeEEEEcCCC-----------------------------CeEEEEEEeccCCcccc
Confidence 432 234556788887777788899999211 1111111111 11111
Q ss_pred eeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecC------------CCceEEEEEecCCCeEEEEcC
Q 008844 292 KMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGP------------KEALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 292 ~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h------------~~~v~~l~~sp~~~~l~s~s~ 356 (551)
. .+.+.|. +|+ |.+.... ...|.+.|.. |+.+..+... ....+.|||+|++..|+..+.
T Consensus 173 ~--lNELe~~-~G~-lyan~w~--~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 173 E--LNELEWV-DGE-IFANVWQ--TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp C--EEEEEEE-TTE-EEEEETT--SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred c--cceeEEE-CCE-EEEEEcc--CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 1 1134554 665 4444432 6789999999 9988887642 134688999999887766664
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.93 E-value=2.6e-07 Score=83.55 Aligned_cols=196 Identities=9% Similarity=0.131 Sum_probs=130.9
Q ss_pred ceeecccccce--EEEEEEcCCCCEEEEEeCCC--eEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe-CCC
Q 008844 15 EVIEEYLEHGV--MKCIAFNRRGTLLAAGCSDG--SCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA-ADK 89 (551)
Q Consensus 15 ~~l~~~~h~~~--V~~l~fs~dg~~latg~~dg--~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg 89 (551)
+++..+.|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+... .........+++..|+... .++
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEeCCEEEEEEeeCC
Confidence 46666767643 4788998 676666666665 8999999999999888654 2333322223355565554 488
Q ss_pred CEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeee-ccccCCCCCCCCCCCCCCCC
Q 008844 90 SLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL-PIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (551)
.+.+||..+.+.+.++........++ +++. .++.+..++.+.++|..+.+.... .+.....
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~---~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~------------- 169 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQ---YLIMSDGTPVLRFLDPESLTPVRTITVTAHGE------------- 169 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCEE--ECSS---CEEECCSSSEEEEECTTTCSEEEEEECEETTE-------------
T ss_pred EEEEEECccCcEEEEEECCCCceEEe--cCCC---EEEEECCCCeEEEEcCCCCeEEEEEEeccCCc-------------
Confidence 99999999999999998765444444 4432 344444578899999988765433 1111000
Q ss_pred CCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccC-----------ccceEEEEEeeCCCEEEEeeC
Q 008844 169 DGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG-----------AAVIKNIVFSRNGQYLLTNSN 236 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~i~~l~~s~~g~~l~t~s~ 236 (551)
.-..++.+.|. +|.+.+....+..|.++|..+++.+..+.... ....+.|+|+|+++.|++.+.
T Consensus 170 ---~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 170 ---ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ---ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ---cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 00134557776 67544444468899999999999988876421 235689999998877766654
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.91 E-value=3.3e-10 Score=111.18 Aligned_cols=185 Identities=13% Similarity=0.024 Sum_probs=101.9
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCC
Q 008844 78 YGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVAN 157 (551)
Q Consensus 78 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 157 (551)
++..|++++.|+.|..||..+|+.+..+.. ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~---------------------------------------------- 40 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPV---------------------------------------------- 40 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCS----------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCc----------------------------------------------
Confidence 467899999999999999999998887764 211
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceE-EEEEeeCCCEEEEeeC
Q 008844 158 GIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIK-NIVFSRNGQYLLTNSN 236 (551)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~-~l~~s~~g~~l~t~s~ 236 (551)
.+..+..++..+++++.+|.|+.||..+++.+..+.......+. ...+. .+..|++++.
T Consensus 41 -------------------~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~ 100 (369)
T 2hz6_A 41 -------------------LQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKK 100 (369)
T ss_dssp -------------------CCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEE
T ss_pred -------------------eecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeC
Confidence 11112245666777788999999999998876555321111110 01111 3446778888
Q ss_pred CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCc
Q 008844 237 DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGE 316 (551)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~d 316 (551)
++.|+.||.. +++.+..+..+. ...++|++..|++++. +
T Consensus 101 dg~v~a~D~~-----------------------------tG~~~w~~~~~~---------~~~~~p~~~~v~~~~~---d 139 (369)
T 2hz6_A 101 QDIWYVIDLL-----------------------------TGEKQQTLSSAF---------ADSLSPSTSLLYLGRT---E 139 (369)
T ss_dssp EEEEEEECCC------------------------------------------------------------EEEEEE---E
T ss_pred CCEEEEEECC-----------------------------CCcEEEEecCCC---------cccccccCCEEEEEec---C
Confidence 9999999921 122222222111 1245668888999988 8
Q ss_pred ceEEEEecC-CceeEEEecCCCceEEEEEecCC---CeEEEEcCCCcEEEEecCCCCc-ce
Q 008844 317 HKIYIWDRA-GYLVKILEGPKEALIDLAWHPVH---PIIVSVSLTGWVYIWAKDYTEN-WS 372 (551)
Q Consensus 317 g~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~---~~l~s~s~dg~i~iW~~~~~~~-~~ 372 (551)
+.|+.||.. |+.+..+..+. ....++.++. ..+++++.+|.|+.||..+++. |.
T Consensus 140 g~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 140 YTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp EEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred CEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 999999998 87765554321 2233344432 4677788899999999987763 53
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.89 E-value=3.1e-07 Score=83.00 Aligned_cols=193 Identities=10% Similarity=0.046 Sum_probs=128.5
Q ss_pred ceeecccccce--EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEE--EEEecCCCCEEEEEeCCCC
Q 008844 15 EVIEEYLEHGV--MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAIT--SVCWSKYGHRILVSAADKS 90 (551)
Q Consensus 15 ~~l~~~~h~~~--V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~--~l~~s~~g~~l~s~s~dg~ 90 (551)
+++..+.|... ...|.|+ ++.+.++.+.+|.|+++|+.+++.+..+ .. .... .+++.. +++.+..-.++.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~---~~~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL---GNIFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC---TTCCEEEEEECS-SCEEEEESSSCE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC---CCcceeEEEEeC-CEEEEEEccCCE
Confidence 45666666533 4678887 4666677778899999999999998887 43 2333 355543 233344445899
Q ss_pred EEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeec-cccCCCCCCCCCCCCCCCCC
Q 008844 91 LTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILP-IAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 169 (551)
+.+||..+++.+.++........++ +++. .++.+..++.+.++|..+.+..... +.....
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~---~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-------------- 178 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEGWGLC--YWNG---KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-------------- 178 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCCCCEE--EETT---EEEEECSSSEEEEECTTTCCEEEEEECEETTE--------------
T ss_pred EEEEECCcCcEEEEEeCCCceeEEe--cCCC---EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc--------------
Confidence 9999999999999998765545554 3332 4555556889999999887754321 111100
Q ss_pred CCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc------------CccceEEEEEeeCCCEEEEee
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS------------GAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~------------~~~~i~~l~~s~~g~~l~t~s 235 (551)
.-..++.+.|. +|.+.+.......|.+.|..+++.+..+... .....+.|+|+|+++.|++.+
T Consensus 179 --~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 179 --PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp --ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred --ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 00144567776 6754444446789999999999998887643 124678999999766555543
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.89 E-value=2.1e-06 Score=88.89 Aligned_cols=324 Identities=11% Similarity=0.059 Sum_probs=176.3
Q ss_pred CCEEEEEeC-CCeEEEEec-cCCceeeEeecccccc---------cEEEEEecCCCCE----EEEEeCCCCEEEEEcCCC
Q 008844 35 GTLLAAGCS-DGSCVIWDF-ETRGIAKELRDKECVA---------AITSVCWSKYGHR----ILVSAADKSLTLWDVLKG 99 (551)
Q Consensus 35 g~~latg~~-dg~I~iwd~-~~~~~~~~~~~~~h~~---------~V~~l~~s~~g~~----l~s~s~dg~i~vwd~~~~ 99 (551)
+..|++++. ++.|.-+|. .+|+.+-.+....... ....++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446667777 889999999 8999887775431110 0123455443434 888888999999999999
Q ss_pred eEEEEEEcCC-----CeeE-EEEecCCCCCcEEEEee------CCCCcEEEEcCCCceeeeccccCCCCCC-CCCC----
Q 008844 100 EKITRIVLQQ-----TPLQ-ARLHPGSSTPSLCLACP------LSSAPMIVDLSTGSTSILPIAVPDVANG-IAPS---- 162 (551)
Q Consensus 100 ~~~~~~~~~~-----~~~~-~~~~p~~~~~~~~~~~~------~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~---- 162 (551)
+.+....... .+.. ..+. ++ .++++. .++.++.+|..+++.............. +.+.
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g----~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD----KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT----EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC----EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 9998877543 1111 1111 21 344444 3789999999999876433222111000 0000
Q ss_pred --------------CCCCCCCCCCCCCceEEEEeeCCCEEEEEecC----------------ceEEEEECCCCcEEEeee
Q 008844 163 --------------SRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK----------------GEILVIDHKSNQIRALVP 212 (551)
Q Consensus 163 --------------~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d----------------g~i~i~d~~~~~~~~~~~ 212 (551)
........ ....-..+++.+...++++++.+ +.|..+|..+++.+..++
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~g-g~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIG-GGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGC-CCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccccCCCcceecC-CCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence 00000000 00011246677788888888765 389999999999988776
Q ss_pred ccCc---------cceEEEEEe-eCC---CEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeecccee
Q 008844 213 VSGA---------AVIKNIVFS-RNG---QYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKC 279 (551)
Q Consensus 213 ~~~~---------~~i~~l~~s-~~g---~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (551)
..+. .++. +... .+| ..|+.++.+|.+.++|..... .+....... ...-...+....+..
T Consensus 296 ~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-----~lw~~~~~~-~~~~~~~~~~~~g~p 368 (599)
T 1w6s_A 296 KTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA-----LVSANKLDD-TVNVFKSVDLKTGQP 368 (599)
T ss_dssp SSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC-----EEEEEESST-TCCSEEEECTTTCCE
T ss_pred cCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC-----EeecccccC-CcccccccccCCCce
Confidence 5432 1221 2222 467 467778899999999932211 110000000 000000000000000
Q ss_pred eee-----------ecccccccceeeeeeeEEcCCCCEEEEeecc------------------------------C----
Q 008844 280 LAL-----------FREFQDSITKMHWKAPCFSGDGEWVIAGSAS------------------------------K---- 314 (551)
Q Consensus 280 ~~~-----------~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~------------------------------~---- 314 (551)
+.. ........-...|..++|+|+..+|++...+ .
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~ 448 (599)
T 1w6s_A 369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN 448 (599)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence 000 0000111112345577788877766553210 0
Q ss_pred --CcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc-ce
Q 008844 315 --GEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN-WS 372 (551)
Q Consensus 315 --~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~-~~ 372 (551)
..|.|+.||+. |+.+-..... .++..-.....+.+|+.++.||.|+.||..+++. |.
T Consensus 449 ~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~ 509 (599)
T 1w6s_A 449 YEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK 509 (599)
T ss_dssp TBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 14789999998 8777665421 2222212233566777889999999999998874 54
No 249
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.89 E-value=2.9e-08 Score=95.61 Aligned_cols=260 Identities=13% Similarity=0.111 Sum_probs=157.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEE
Q 008844 27 KCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIV 106 (551)
Q Consensus 27 ~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~ 106 (551)
.++.+..+|. |.+++.++.|..|| .+++....+... ...+.++...+++. |+.++.+ |..+|. +++.+..+.
T Consensus 23 ~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 23 SSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSG--EIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGG--GEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred cCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecC--CCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE
Confidence 3455556665 55567788899999 888876655433 45567787877765 5555544 888885 555433322
Q ss_pred cCCCe-eEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC
Q 008844 107 LQQTP-LQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG 185 (551)
Q Consensus 107 ~~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 185 (551)
..... ....+. + ..+.+++.++.+..+|.. +....... ... ..+.++...+++
T Consensus 95 ~~~~~~~~~~~~-~----~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~-------------------~~~~~~~~~~~g 148 (330)
T 3hxj_A 95 TKKAIVSDFTIF-E----DILYVTSMDGHLYAINTD-GTEKWRFK-TKK-------------------AIYATPIVSEDG 148 (330)
T ss_dssp C-----CCEEEE-T----TEEEEECTTSEEEEECTT-SCEEEEEE-CSS-------------------CCCSCCEECTTS
T ss_pred CCCCcccCceEE-C----CEEEEEecCCEEEEEcCC-CCEEEEEc-CCC-------------------ceeeeeEEcCCC
Confidence 22211 111222 2 256677778889999988 55432211 110 034455666666
Q ss_pred CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCC
Q 008844 186 DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAE 265 (551)
Q Consensus 186 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (551)
. |++|+.++.|..||.. ++.+..+. .....+.++.+.+++.+++ ++ +.|..|| ..
T Consensus 149 ~-l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~------------------ 203 (330)
T 3hxj_A 149 T-IYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PD------------------ 203 (330)
T ss_dssp C-EEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TT------------------
T ss_pred E-EEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CC------------------
Confidence 6 6778888999999999 77766664 3345566777777777544 44 7788887 21
Q ss_pred CCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEe
Q 008844 266 PNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWH 345 (551)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~s 345 (551)
+..+.........+. ++++.++|.+. +++. ++.|+.++..+..+..+......+..+.+.
T Consensus 204 -----------g~~~~~~~~~~~~~~-----~~~~~~~g~l~-v~t~---~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (330)
T 3hxj_A 204 -----------GTEKWNFYAGYWTVT-----RPAISEDGTIY-VTSL---DGHLYAINPDGTEKWRFKTGKRIESSPVIG 263 (330)
T ss_dssp -----------SCEEEEECCSSCCCS-----CCEECTTSCEE-EEET---TTEEEEECTTSCEEEEEECSSCCCSCCEEC
T ss_pred -----------CcEEEEEccCCccee-----ceEECCCCeEE-EEcC---CCeEEEECCCCCEeEEeeCCCCccccceEc
Confidence 111111111122233 67788887654 4555 577888886677776666555445556665
Q ss_pred cCCCeEEEEcCCCcEEEEecC
Q 008844 346 PVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 346 p~~~~l~s~s~dg~i~iW~~~ 366 (551)
+++ .|..++.+|.|..++..
T Consensus 264 ~~g-~l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 264 NTD-TIYFGSYDGHLYAINPD 283 (330)
T ss_dssp TTS-CEEEECTTCEEEEECTT
T ss_pred CCC-eEEEecCCCCEEEECCC
Confidence 555 55667778889888863
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.85 E-value=1.5e-06 Score=77.93 Aligned_cols=194 Identities=14% Similarity=0.114 Sum_probs=128.4
Q ss_pred ceeecccccc--eEEEEEEcCCCCEEEEEeCC--CeEEEEeccCCceeeEeecccccccEE--EEEecCCCCEEEEE-eC
Q 008844 15 EVIEEYLEHG--VMKCIAFNRRGTLLAAGCSD--GSCVIWDFETRGIAKELRDKECVAAIT--SVCWSKYGHRILVS-AA 87 (551)
Q Consensus 15 ~~l~~~~h~~--~V~~l~fs~dg~~latg~~d--g~I~iwd~~~~~~~~~~~~~~h~~~V~--~l~~s~~g~~l~s~-s~ 87 (551)
+++..+.|.. -...|.|++ +.++.+.+.. ..|+++|+.+++.+..+... .... .+++. +..|+.. -.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~---~~~fgeGi~~~--~~~ly~ltw~ 83 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP---PPYFGAGIVAW--RDRLIQLTWR 83 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC---TTCCEEEEEEE--TTEEEEEESS
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC---CCcceeEEEEe--CCEEEEEEee
Confidence 5666777763 366899986 5555555554 48999999999999888654 2222 33443 4445444 45
Q ss_pred CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeee-ccccCCCCCCCCCCCCCC
Q 008844 88 DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSIL-PIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 88 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (551)
++.+.+||..+.+.+.++........++ +++ ..+++ +..++.+.++|..+.+.... .+.....
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg--~~L~v-Sdgs~~l~~iDp~t~~~~~~I~V~~~g~----------- 147 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEGWALT--SDD--SHLYM-SDGTAVIRKLDPDTLQQVGSIKVTAGGR----------- 147 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCCCEEE--ECS--SCEEE-ECSSSEEEEECTTTCCEEEEEECEETTE-----------
T ss_pred CCEEEEEECCcCcEEEEEeCCCCceEEe--eCC--CEEEE-ECCCCeEEEEeCCCCeEEEEEEEccCCc-----------
Confidence 8999999999999999998876555554 443 23444 45688899999988765432 1111100
Q ss_pred CCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeecc------------CccceEEEEEeeCCCEEEEe
Q 008844 167 YSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVS------------GAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~------------~~~~i~~l~~s~~g~~l~t~ 234 (551)
.-..++.+.|. +|..++.......|.+.|..+++.+..+... .....+.|+++|+++.|++.
T Consensus 148 -----~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 148 -----PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp -----ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred -----ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 00134556655 5654444446789999999999998887633 12467899999987766655
Q ss_pred eC
Q 008844 235 SN 236 (551)
Q Consensus 235 s~ 236 (551)
+.
T Consensus 222 GK 223 (243)
T 3mbr_X 222 GK 223 (243)
T ss_dssp ET
T ss_pred CC
Confidence 43
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.84 E-value=6.4e-06 Score=89.44 Aligned_cols=285 Identities=11% Similarity=0.096 Sum_probs=169.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEE
Q 008844 26 MKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~ 105 (551)
|.++...++|.+.+ |+.++-|..|+..+++....... .+...|.++...+++.+ ..++.++-|.+||..++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~-~~~~~i~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPI-LGTKQIQAILQQSPTRI-WVATEGAGLFLINPKTKEIKNYL 251 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEE-EEEEBSSCEEEEETTTTEEEEEC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCC-CCCCeeEEEEEcCCCCE-EEEECCCCeEEEeCCCCeEEEee
Confidence 88888888887555 56554588999877665432211 12467889888877764 44554445899998776544322
Q ss_pred Ec--------CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 106 VL--------QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 106 ~~--------~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
.. ...+.++...+.+ .+..+... .+.+|+..++............ .......|.
T Consensus 252 ~~~~~~~~l~~~~i~~i~~d~~g----~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~i~ 313 (795)
T 4a2l_A 252 HSPSNPKSISSNYIRSLAMDSQN----RLWIGTFN-DLNIYHEGTDSFASYSSNPVEN-------------GSLSQRSVR 313 (795)
T ss_dssp CCTTCTTSCSCSBEEEEEECTTS----CEEEEESS-CEEEEETTTTEEEEECCCTTST-------------TSCSSSCEE
T ss_pred cCCCCccccCCCeEEEEEEcCCC----CEEEEeCC-hhheEcCCCCeEEEEecCCCCC-------------CCCCCCcEE
Confidence 21 1224455554443 24444444 7888998777654432211000 011122789
Q ss_pred EEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-----cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcccc
Q 008844 178 AACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-----SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
++...++|. |.+|+.++-|.+|+..+......... .....|.++...++|. |.+|+.++-|..|+....
T Consensus 314 ~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~---- 387 (795)
T 4a2l_A 314 SIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ---- 387 (795)
T ss_dssp EEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC----
T ss_pred EEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC----
Confidence 999998887 67788888899999876654322210 1245689999888876 556777777888882110
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccc---c-ccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ---D-SITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY 327 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~ 327 (551)
....+.... . ......+.+++..++|+.|..|+. ++-|++|+.. ++
T Consensus 388 --------------------------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~---~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 388 --------------------------RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH---AGGLSILHRNSGQ 438 (795)
T ss_dssp --------------------------CEEEECCC------CCSCSCEEEEEEETTTTEEEEEET---TTEEEEEETTTCC
T ss_pred --------------------------cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC---cCceeEEeCCCCc
Confidence 011111000 0 011112237788888885666776 5669999988 54
Q ss_pred eeEEEe----cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCC
Q 008844 328 LVKILE----GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 328 ~~~~l~----~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~ 368 (551)
...... .+...|.++...+++.+.+... . -|.+|+..+.
T Consensus 439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 439 VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQR 481 (795)
T ss_dssp EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTT
T ss_pred EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCC
Confidence 333221 1345789999988888666554 4 4778887653
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.83 E-value=3.8e-06 Score=75.28 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=120.7
Q ss_pred eeeEeecccccccEEEEEecCCCCEEEEEeCC--CCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCC
Q 008844 57 IAKELRDKECVAAITSVCWSKYGHRILVSAAD--KSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSA 134 (551)
Q Consensus 57 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 134 (551)
++.++ .|....-...|.|++ +.++.+.+.. ..|+++|+.+|+.+..+.........
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fge-------------------- 68 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGA-------------------- 68 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEE--------------------
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCccee--------------------
Confidence 44455 344456678999986 5666666664 48999999999999888765432221
Q ss_pred cEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEE-EEecCceEEEEECCCCcEEEeeec
Q 008844 135 PMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVY-VGNSKGEILVIDHKSNQIRALVPV 213 (551)
Q Consensus 135 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~g~~dg~i~i~d~~~~~~~~~~~~ 213 (551)
.+...++.|+ +.-.++.+.+||..+.+.+.+++.
T Consensus 69 ---------------------------------------------Gi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 69 ---------------------------------------------GIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp ---------------------------------------------EEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred ---------------------------------------------EEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 1112233444 444688999999999999999875
Q ss_pred cCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc--cccccc
Q 008844 214 SGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE--FQDSIT 291 (551)
Q Consensus 214 ~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 291 (551)
...+ ..+.+++..|+++..++.|.++|... .+.+..+.- ....+.
T Consensus 104 ~~~G----wglt~dg~~L~vSdgs~~l~~iDp~t-----------------------------~~~~~~I~V~~~g~~~~ 150 (243)
T 3mbr_X 104 PGEG----WALTSDDSHLYMSDGTAVIRKLDPDT-----------------------------LQQVGSIKVTAGGRPLD 150 (243)
T ss_dssp SSCC----CEEEECSSCEEEECSSSEEEEECTTT-----------------------------CCEEEEEECEETTEECC
T ss_pred CCCc----eEEeeCCCEEEEECCCCeEEEEeCCC-----------------------------CeEEEEEEEccCCcccc
Confidence 4322 34446777777776788999999211 111111111 111111
Q ss_pred eeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecC------------C-CceEEEEEecCCCeEEEEcC
Q 008844 292 KMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGP------------K-EALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 292 ~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h------------~-~~v~~l~~sp~~~~l~s~s~ 356 (551)
..+.+.+. +|+..+..-. ...|.+.|.. |+.+..+... . ...+.|||+|++..|+..+.
T Consensus 151 --~lNeLe~~-~G~lyanvw~---s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 151 --NLNELEWV-NGELLANVWL---TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp --CEEEEEEE-TTEEEEEETT---TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred --cceeeEEe-CCEEEEEECC---CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 11234443 5654443334 5789999999 9988887632 1 24688999998876666553
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.77 E-value=3.7e-05 Score=83.44 Aligned_cols=288 Identities=7% Similarity=0.050 Sum_probs=172.3
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc-----cccccEEEEEecCCCCEEEEEeCCCCEEEEEcC
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK-----ECVAAITSVCWSKYGHRILVSAADKSLTLWDVL 97 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~-----~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~ 97 (551)
...|.++...++|.+.+ |+.++-|.+|+..+++........ -....|.++...++|.+. .|+.+ -|.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCC
Confidence 45688888888887555 444444889998876544332110 013579999999888754 45545 58999987
Q ss_pred CCeEEEEEEc--------CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 98 KGEKITRIVL--------QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 98 ~~~~~~~~~~--------~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
++........ ...+.++...+.+ .+..+...+.+..++.............. . .
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~--~------------~ 352 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQG----GMWLGTYFGGLNYYHPIRNRFKNIRNIPY--K------------N 352 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTS----CEEEEESSSCEEEECGGGGSSEEECCCTT--S------------S
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCc----CEEEEECCCCeEEeCCCcccceEEcCCCC--C------------C
Confidence 7764432211 1234455555443 35667777888888876554332211100 0 0
Q ss_pred CCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec-------cCccceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV-------SGAAVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
......|.+++..++|. |.+|+.++-|..|+..++........ .....|.++...++|+.|.+|+.++-|.+
T Consensus 353 ~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~ 431 (795)
T 4a2l_A 353 SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSI 431 (795)
T ss_dssp SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeE
Confidence 11122688998888886 66788888899999988766443211 12467899999888885777778778999
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
|+.... . +..+...........+.++...++|++.++. . . -|++|
T Consensus 432 ~d~~~~-----------------------------~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~---~-Gl~~~ 476 (795)
T 4a2l_A 432 LHRNSG-----------------------------Q-VENFNQRNSQLVNENVYAILPDGEGNLWLGT-L---S-ALVRF 476 (795)
T ss_dssp EETTTC-----------------------------C-EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S---S-CEEEE
T ss_pred EeCCCC-----------------------------c-EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c---C-ceeEE
Confidence 982110 0 1111110000111122377778888755544 3 2 38889
Q ss_pred ecC-CceeEEEec------CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 323 DRA-GYLVKILEG------PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 323 d~~-~~~~~~l~~------h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+.. +........ +...|.++...+++.+.+... +-|..|+..+.+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 477 NPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp ETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred eCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 987 443322211 235789999998888666554 457788876543
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.77 E-value=1.7e-06 Score=78.26 Aligned_cols=193 Identities=12% Similarity=0.071 Sum_probs=120.0
Q ss_pred ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCc
Q 008844 56 GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAP 135 (551)
Q Consensus 56 ~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i 135 (551)
+++.++ .|.-..-...|.|+ ++.++++.+.+|.|+++|+.+++.+..+ .....+..
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~Fge--------------------- 99 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAE--------------------- 99 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEE---------------------
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCccee---------------------
Confidence 344555 23334456788997 4667777778889999999999887776 44322111
Q ss_pred EEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeecc
Q 008844 136 MIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVS 214 (551)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 214 (551)
.+++ .+ ++.++.-.++.+.+||..+.+.+..++..
T Consensus 100 ------------------------------------------Git~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 100 ------------------------------------------GLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp ------------------------------------------EEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred ------------------------------------------EEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 1222 23 33444456889999999999999998753
Q ss_pred CccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecc--cccccce
Q 008844 215 GAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE--FQDSITK 292 (551)
Q Consensus 215 ~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 292 (551)
..+ ..++++++.|+.+..++.|.++|... .+.+..+.- ....+.
T Consensus 136 ~eG----wGLt~Dg~~L~vSdGs~~l~~iDp~T-----------------------------~~v~~~I~V~~~g~~v~- 181 (268)
T 3nok_A 136 GEG----WGLCYWNGKLVRSDGGTMLTFHEPDG-----------------------------FALVGAVQVKLRGQPVE- 181 (268)
T ss_dssp SCC----CCEEEETTEEEEECSSSEEEEECTTT-----------------------------CCEEEEEECEETTEECC-
T ss_pred Cce----eEEecCCCEEEEECCCCEEEEEcCCC-----------------------------CeEEEEEEeCCCCcccc-
Confidence 322 33446788888877789999999211 111111111 111111
Q ss_pred eeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecC-------------CCceEEEEEecCCCeEEEEc
Q 008844 293 MHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGP-------------KEALIDLAWHPVHPIIVSVS 355 (551)
Q Consensus 293 ~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h-------------~~~v~~l~~sp~~~~l~s~s 355 (551)
..+.+.|. +|+ |.+.... ...|.+.|.. |+.+..+... ....+.|||+|++..|+..+
T Consensus 182 -~lNeLe~~-dG~-lyanvw~--s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 182 -LINELECA-NGV-IYANIWH--SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -CEEEEEEE-TTE-EEEEETT--CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -cccccEEe-CCE-EEEEECC--CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 11245555 675 4444432 6789999999 9888887642 13568899999877655554
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.75 E-value=2.4e-05 Score=81.07 Aligned_cols=327 Identities=10% Similarity=0.064 Sum_probs=173.0
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeEeeccccccc-------EEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC
Q 008844 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAA-------ITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~-------V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 108 (551)
..|++++.++.|.-+|..+|+.+-.+........ ...+++ .+..|+.++.++.|..+|..+|+.+..+...
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 3555566545599999999998877764311100 011222 2457888888999999999999999888764
Q ss_pred CC-----ee-EEEEecCCCCCc-EEEEee------CCCCcEEEEcCCCceeeeccccCCC-------------CCCCCCC
Q 008844 109 QT-----PL-QARLHPGSSTPS-LCLACP------LSSAPMIVDLSTGSTSILPIAVPDV-------------ANGIAPS 162 (551)
Q Consensus 109 ~~-----~~-~~~~~p~~~~~~-~~~~~~------~~~~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~~ 162 (551)
.. +. ...+..+..... .++++. .++.++.+|..+++........... .......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 31 11 111111111111 344443 3788999999999876532211000 0000000
Q ss_pred CCC------C--CCCCCCCCCceEEEEeeCCCEEEEEec--------------------C----ceEEEEECCCCcEEEe
Q 008844 163 SRN------K--YSDGTPPFTPTAACFNKYGDLVYVGNS--------------------K----GEILVIDHKSNQIRAL 210 (551)
Q Consensus 163 ~~~------~--~~~~~~~~~i~~~~~s~~g~~l~~g~~--------------------d----g~i~i~d~~~~~~~~~ 210 (551)
... + .........-..+++++...++++++. + +.|..+|..+++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000 0 000000111235778888888887763 2 6899999999999888
Q ss_pred eeccCc---------cceEEEEEe-eCCC---EEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccc
Q 008844 211 VPVSGA---------AVIKNIVFS-RNGQ---YLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGS 277 (551)
Q Consensus 211 ~~~~~~---------~~i~~l~~s-~~g~---~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (551)
++..+. .++. +... .+|+ .|+.++.+|.++++|.... +.+........ ......+.....
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-----~~lw~~~~~~~-~~~~~~~~~~~g 379 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNG-----KLQNAFPFVDN-ITWASHIDLKTG 379 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTC-----CEEEEEESSSC-CCSEEEECTTTC
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCC-----CEecccccccC-ccccccccccCC
Confidence 754322 1221 1221 4674 6888899999999993221 11110000000 000000000000
Q ss_pred eeee-----------------eecccccccceeeeeeeEEcCCCCEEEEeecc---------------------------
Q 008844 278 KCLA-----------------LFREFQDSITKMHWKAPCFSGDGEWVIAGSAS--------------------------- 313 (551)
Q Consensus 278 ~~~~-----------------~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~--------------------------- 313 (551)
+.+. .........-...|..++++|+...+++...+
T Consensus 380 ~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p 459 (582)
T 1flg_A 380 RPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKR 459 (582)
T ss_dssp CEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecC
Confidence 0000 00000011112235567888876655543310
Q ss_pred ---CCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc-ce
Q 008844 314 ---KGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN-WS 372 (551)
Q Consensus 314 ---~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~-~~ 372 (551)
...|.|+.||+. |+.+-....+. ++..-.....+.+++.++.||.|+.||..+++. |.
T Consensus 460 ~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 460 MYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp SCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence 015889999998 88776665332 222222223566788899999999999998874 54
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.74 E-value=2.1e-05 Score=72.92 Aligned_cols=194 Identities=10% Similarity=0.048 Sum_probs=119.1
Q ss_pred ceEEEEEEcCCCCEEEEE-eCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe-CCCCEEEEEcCCCeE
Q 008844 24 GVMKCIAFNRRGTLLAAG-CSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA-ADKSLTLWDVLKGEK 101 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg-~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~ 101 (551)
..+.+++|++++..|+.+ ...+.|.++++.+......+... ......|++.+++..|+.+. ..+.|.++++.....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~--~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT--CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC--CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence 457899999976655544 45689999999765543333221 35678999999766565554 467899999864332
Q ss_pred EEEEEcC-CCeeEEEEecCCCCCcEEEEeeC--CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceE
Q 008844 102 ITRIVLQ-QTPLQARLHPGSSTPSLCLACPL--SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTA 178 (551)
Q Consensus 102 ~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (551)
....... ..+..+.+.|.+. .++++... .+.|..+++.......+... ....+..
T Consensus 114 ~~~~~~~~~~P~~i~vd~~~g--~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~--------------------~~~~P~g 171 (267)
T 1npe_A 114 RVLFDTGLVNPRGIVTDPVRG--NLYWTDWNRDNPKIETSHMDGTNRRILAQD--------------------NLGLPNG 171 (267)
T ss_dssp EEEECSSCSSEEEEEEETTTT--EEEEEECCSSSCEEEEEETTSCCCEEEECT--------------------TCSCEEE
T ss_pred EEEEECCCCCccEEEEeeCCC--EEEEEECCCCCcEEEEEecCCCCcEEEEEC--------------------CCCCCcE
Confidence 2222222 4577888888532 24444433 35677777654332221100 0115789
Q ss_pred EEEeeCCCEEEEEe-cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 179 ACFNKYGDLVYVGN-SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 179 ~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
+++++++..|+++. ..+.|.++|+........+. .......+++. .+.++++....+.|.+++
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d-~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSY-GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec--CCCCceEEEEe-CCEEEEEECCCCeEEEEe
Confidence 99999887776655 46899999998655444332 22334566654 343444444568899998
No 257
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=1.7e-05 Score=79.13 Aligned_cols=152 Identities=14% Similarity=0.214 Sum_probs=96.3
Q ss_pred eEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC-C---EEEEEcCCC
Q 008844 25 VMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK-S---LTLWDVLKG 99 (551)
Q Consensus 25 ~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg-~---i~vwd~~~~ 99 (551)
....|+|+| ++..|+++...+.|+.+|+.++.+..... . ......|+|+++|++|+.+...+ . ..+|-...+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~--~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-G--LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-C--CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-C--CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 457889998 45556655555889999998766544433 2 46688999999999777666422 1 122211222
Q ss_pred eEE--EEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 100 EKI--TRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 100 ~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
... ..+. . ...+.
T Consensus 215 ~~~~~~~l~-----------~------------------------------------------------------~~~p~ 229 (430)
T 3tc9_A 215 GFKVITELT-----------K------------------------------------------------------GQNCN 229 (430)
T ss_dssp TSCSEEEEE-----------E------------------------------------------------------CSSCC
T ss_pred ceeeeeeec-----------c------------------------------------------------------CCCce
Confidence 110 0000 0 00456
Q ss_pred EEEEee-CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEE-EeeCCCeEEEEe
Q 008844 178 AACFNK-YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLL-TNSNDRTIRIYD 244 (551)
Q Consensus 178 ~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-t~s~Dg~i~iwd 244 (551)
.++++| +|.++++-...+.|..|+..++................|+|+|+|++|+ +-...+.|..++
T Consensus 230 giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~ 298 (430)
T 3tc9_A 230 GAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSD 298 (430)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEe
Confidence 788899 6666666667889999999877653333323334578899999999554 445678899987
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.69 E-value=1.5e-05 Score=82.63 Aligned_cols=293 Identities=13% Similarity=0.025 Sum_probs=152.6
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccc--cEEE-EEecCCCCEEEEEeC------CCCEEEEEcCCCeEEEEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVA--AITS-VCWSKYGHRILVSAA------DKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~--~V~~-l~~s~~g~~l~s~s~------dg~i~vwd~~~~~~~~~~ 105 (551)
+..|++++.++.|..+|..+|+.+..+....+.. .+.+ .... ++ .+++++. ++.|..+|..+|+.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999999887765432111 1211 1111 34 5555554 789999999999999988
Q ss_pred EcCCCe---------------------------------------eEEEEecCCCCCcEEEEeeCC--------------
Q 008844 106 VLQQTP---------------------------------------LQARLHPGSSTPSLCLACPLS-------------- 132 (551)
Q Consensus 106 ~~~~~~---------------------------------------~~~~~~p~~~~~~~~~~~~~~-------------- 132 (551)
...... ..+.+.+.. . .++.+..+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~--g-~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL--N-LFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT--T-EEEEECCCCSCSCGGGSCSCCT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC--C-eEEEECCCCccccCCccCCCce
Confidence 764322 012233321 2 33333321
Q ss_pred --CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC---EEEEEecCceEEEEECCCCcE
Q 008844 133 --SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD---LVYVGNSKGEILVIDHKSNQI 207 (551)
Q Consensus 133 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l~~g~~dg~i~i~d~~~~~~ 207 (551)
+.+..+|..+++............- .......+..+....+|+ .+++++.+|.++++|..+++.
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~-----------d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEW-----------DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSS-----------CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred eEEEEEEEecCCCcEEEEecCCCCccc-----------ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 2488889988886543221110000 000000222233335774 677889999999999999999
Q ss_pred EEeeeccCc------------cce--------------------------EEEEEeeCCCEEEEeeCCCeEEEEeCcCCc
Q 008844 208 RALVPVSGA------------AVI--------------------------KNIVFSRNGQYLLTNSNDRTIRIYDNLLPL 249 (551)
Q Consensus 208 ~~~~~~~~~------------~~i--------------------------~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~ 249 (551)
+........ .++ ..++++|+..+|++.+.+....++......
T Consensus 339 ~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~ 418 (571)
T 2ad6_A 339 IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY 418 (571)
T ss_dssp EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccc
Confidence 877653320 111 236788888888887665444444311100
Q ss_pred cccchhhh----hhhccC----CCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEE
Q 008844 250 KNGLEALV----DIEKGI----AEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYI 321 (551)
Q Consensus 250 ~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~i 321 (551)
......+. ...... .....+..+...+++.+-.+. +...+. ...+...+..|++++. ++.|+.
T Consensus 419 ~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~-----~~~~~t~gg~v~~g~~---dg~l~a 489 (571)
T 2ad6_A 419 RAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAW-----GGTLYTKGGLVWYATL---DGYLKA 489 (571)
T ss_dssp CTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCC-----SBCEEETTTEEEEECT---TSEEEE
T ss_pred ccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCcc-----ceeEEECCCEEEEEcC---CCeEEE
Confidence 00000000 000000 000001111122222222111 111111 2222334667777887 899999
Q ss_pred EecC-CceeEEEecCCCc-eEEEEEecCCCeEE
Q 008844 322 WDRA-GYLVKILEGPKEA-LIDLAWHPVHPIIV 352 (551)
Q Consensus 322 wd~~-~~~~~~l~~h~~~-v~~l~~sp~~~~l~ 352 (551)
||.. |+++..+...... -.-+.+..+++.++
T Consensus 490 ~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 490 LDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 9999 9998888754321 12233456666443
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=5.7e-05 Score=81.78 Aligned_cols=286 Identities=7% Similarity=0.021 Sum_probs=166.5
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEee-------c-----ccccccEEEEEecCCCCEEEEEeCCCC
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELR-------D-----KECVAAITSVCWSKYGHRILVSAADKS 90 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~-------~-----~~h~~~V~~l~~s~~g~~l~s~s~dg~ 90 (551)
...|.++...++|.+.+ |+..+-|.+++..++....... . .-....|.+|...++|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 35699999988887554 5654568889987765432211 0 01245799999988886 666776777
Q ss_pred EEEEEcCCCeEEEEEE----------cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCC
Q 008844 91 LTLWDVLKGEKITRIV----------LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIA 160 (551)
Q Consensus 91 i~vwd~~~~~~~~~~~----------~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 160 (551)
|..|+...+....... ....+.++...+++ .+..+..++.+..++..++....... ..
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~--~~------ 402 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG----KLWIGTDGGGINVFENGKRVAIYNKE--NR------ 402 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS----CEEEEEBSSCEEEEETTEEEEECC------------
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC----CEEEEeCCCcEEEEECCCCeEEEccC--CC------
Confidence 9999876654322211 11224444444433 35556666778888876554332210 00
Q ss_pred CCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee-ccCccceEEEEEeeCCCEEEEeeCCCe
Q 008844 161 PSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP-VSGAAVIKNIVFSRNGQYLLTNSNDRT 239 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~t~s~Dg~ 239 (551)
......|.+++..++|. |.+|+..+.|..++..+++...... ......|.++...++|. |..++. +-
T Consensus 403 ---------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~G 470 (781)
T 3v9f_A 403 ---------ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AG 470 (781)
T ss_dssp ----------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TE
T ss_pred ---------CCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-Cc
Confidence 01122688888887776 5567777789999998876543321 12346789998888776 444555 56
Q ss_pred EEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccc-cccceeeeeeeEEcCCCCEEEEeeccCCcce
Q 008844 240 IRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQ-DSITKMHWKAPCFSGDGEWVIAGSASKGEHK 318 (551)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~ 318 (551)
|.+|+.... . ...+.... .......+.+++..++|++.++... +-
T Consensus 471 l~~~~~~~~-----------------------------~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~----~G 516 (781)
T 3v9f_A 471 VFVIDLASK-----------------------------K-VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG----GG 516 (781)
T ss_dssp EEEEESSSS-----------------------------S-CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS----SC
T ss_pred eEEEeCCCC-----------------------------e-EEecccCcccccccceeEEEEEcCCCCEEEEEcC----CC
Confidence 778872110 0 00000000 0000112237788888886655442 34
Q ss_pred EEEEecCCceeEEEec----CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 319 IYIWDRAGYLVKILEG----PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 319 I~iwd~~~~~~~~l~~----h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
|+.|+.....+..+.. ....|.++...+++.+.++.. .|.|..|+..+.+
T Consensus 517 l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 517 VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 8888887434444432 235688999988888766655 6766888876543
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.64 E-value=2.1e-06 Score=90.99 Aligned_cols=277 Identities=11% Similarity=0.033 Sum_probs=148.3
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEeccCCceeeEeec-ccccccEEEEEecCCCCEEEEEeC-CCCEEE
Q 008844 28 CIAFNR-RGTLLAAGCSDG-----------SCVIWDFETRGIAKELRD-KECVAAITSVCWSKYGHRILVSAA-DKSLTL 93 (551)
Q Consensus 28 ~l~fs~-dg~~latg~~dg-----------~I~iwd~~~~~~~~~~~~-~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~v 93 (551)
++++.+ +|++++.|+.+. .+.+||..+++....... ..+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456677 889999887543 588999988764332211 111233445777889999999985 568999
Q ss_pred EEcCCCeEEEEEEcCCC--eeEEEEecCCCCCcEEEEee-CC-----CCcEEEEcCCCceeeeccccCCCCCCCCCCCCC
Q 008844 94 WDVLKGEKITRIVLQQT--PLQARLHPGSSTPSLCLACP-LS-----SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRN 165 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~-~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (551)
||..++.....-..+.. -..+...+++. +++.++ .+ ..+.+||..+.....++...... .... +.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~---iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p---~~~~-~~ 342 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR---VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP---MLTA-DK 342 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC---EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG---GCCC-CT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCe---EEEEeCcccCCcccccceEeCCCCCcceeCCCccccc---cccc-cc
Confidence 99988765433222222 23445555543 666666 33 46889999887765542110000 0000 00
Q ss_pred CCCCCCCCCCceEEEEeeCCCEEEEEecC---------ceEEEEECCCCcEEEeeeccC--------ccceEEEEEee-C
Q 008844 166 KYSDGTPPFTPTAACFNKYGDLVYVGNSK---------GEILVIDHKSNQIRALVPVSG--------AAVIKNIVFSR-N 227 (551)
Q Consensus 166 ~~~~~~~~~~i~~~~~s~~g~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~~~--------~~~i~~l~~s~-~ 227 (551)
..++..++..++.|+.+ ..+..||..+........... ...-.++.|.. +
T Consensus 343 ------------~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~ 410 (656)
T 1k3i_A 343 ------------QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK 410 (656)
T ss_dssp ------------TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT
T ss_pred ------------cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCC
Confidence 00111233344444433 457888988776433221110 11223444443 6
Q ss_pred CCEEEEeeCCC-----------eEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeee
Q 008844 228 GQYLLTNSNDR-----------TIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHW 295 (551)
Q Consensus 228 g~~l~t~s~Dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 295 (551)
+++++.|+.++ .|.+||... ....... .... ....+
T Consensus 411 ~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~-----------------------------~~W~~~~~~~mp---~~R~~ 458 (656)
T 1k3i_A 411 GKILTFGGSPDYQDSDATTNAHIITLGEPGT-----------------------------SPNTVFASNGLY---FARTF 458 (656)
T ss_dssp TEEEEECCBSSSSSSBCCCCEEEEECCSTTS-----------------------------CCEEEECTTCCS---SCCBS
T ss_pred CeEEEEeCCCCCCCCCcCCcceEEEcCCCCC-----------------------------CCeeEEccCCCC---CCccc
Confidence 77778877532 455565111 0111110 0000 00111
Q ss_pred eeeEEcCCCCEEEEeeccCC--------cceEEEEecC-CceeEEEe---cCCCceEEEEEecCCCeEEEEcC
Q 008844 296 KAPCFSGDGEWVIAGSASKG--------EHKIYIWDRA-GYLVKILE---GPKEALIDLAWHPVHPIIVSVSL 356 (551)
Q Consensus 296 ~~~~~s~dg~~l~~gs~~~~--------dg~I~iwd~~-~~~~~~l~---~h~~~v~~l~~sp~~~~l~s~s~ 356 (551)
.++++.|+|+++++|+...+ -..+.+||.. .+. ..+. .+........+.|++++++.||.
T Consensus 459 ~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 459 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-YKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce-eecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 25567789999999986311 1568999988 432 2222 12222334556789999999985
No 261
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.62 E-value=2.3e-05 Score=82.86 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=97.8
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecC--CCCEEEEEeC------CCCEEEEEcCCCeEEEEEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSK--YGHRILVSAA------DKSLTLWDVLKGEKITRIV 106 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~------dg~i~vwd~~~~~~~~~~~ 106 (551)
+..|++++.|+.|..+|..+|+.+..+...... ....+..+| .+..++++.. ++.|..+|..+|+.+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTT-SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCC-CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 457888889999999999999988777642110 000111111 1334555543 5899999999999999886
Q ss_pred cCC--Ce------------------------------eEEEEecCCCCCcEEEEeeCCC-------------------Cc
Q 008844 107 LQQ--TP------------------------------LQARLHPGSSTPSLCLACPLSS-------------------AP 135 (551)
Q Consensus 107 ~~~--~~------------------------------~~~~~~p~~~~~~~~~~~~~~~-------------------~i 135 (551)
... +. ....+.|.. .+++.+..++ .+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~---~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL---DLLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT---TEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC---CEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 421 10 023444432 2455555444 38
Q ss_pred EEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCC---EEEEEecCceEEEEECCCCcEEEee
Q 008844 136 MIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGD---LVYVGNSKGEILVIDHKSNQIRALV 211 (551)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l~~g~~dg~i~i~d~~~~~~~~~~ 211 (551)
..+|..+++............- .......+....+..+|+ .+++++.+|.++++|..+++.+...
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~w-----------d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSW-----------DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCS-----------CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEcCCCCceeeEeecCCCccc-----------cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 8889988887654322111000 000001233333445665 6889999999999999999987544
No 262
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.57 E-value=5.3e-05 Score=75.49 Aligned_cols=255 Identities=12% Similarity=0.097 Sum_probs=136.9
Q ss_pred eEEEEEEcCC--CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC----C-EEEEEcC
Q 008844 25 VMKCIAFNRR--GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK----S-LTLWDVL 97 (551)
Q Consensus 25 ~V~~l~fs~d--g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg----~-i~vwd~~ 97 (551)
....|+|+|+ +..|+.+...+.|+.++..++....... . ......|+|+++|+ |+.+...+ . +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~--~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-N--IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-C--CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-C--CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 3568899984 3445555444889999998777654443 2 45689999999999 55554322 1 1111110
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
.+.. ... .+.. -..+.
T Consensus 216 ~~~~--------~~~--~~~~------------------------------------------------------~~~P~ 231 (433)
T 4hw6_A 216 SGFT--------ERL--SLCN------------------------------------------------------ARGAK 231 (433)
T ss_dssp GTTC--------CEE--EEEE------------------------------------------------------CSSBC
T ss_pred CCee--------ccc--cccc------------------------------------------------------cCCCC
Confidence 0000 000 0000 00456
Q ss_pred EEEEee-CCCEEEEEecCceEEEEECCCCcEE-EeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEeCcCCccccch
Q 008844 178 AACFNK-YGDLVYVGNSKGEILVIDHKSNQIR-ALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 178 ~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.+++++ +|.++++-..++.|+.++..++... ..+.......-..|+|+|+|++|+.+ ...+.|+.++.. .......
T Consensus 232 giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d-~~~~~~~ 310 (433)
T 4hw6_A 232 TCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN-RETGKLA 310 (433)
T ss_dssp CCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC-TTTCCBC
T ss_pred EEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC-CCCcccC
Confidence 678888 6665555556789999999877762 23222222334579999999855544 557889988721 1100000
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEE---------cCCCCEEEEeeccCCcceEEEEecC
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCF---------SGDGEWVIAGSASKGEHKIYIWDRA 325 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------s~dg~~l~~gs~~~~dg~I~iwd~~ 325 (551)
....+.+.... .+ + ..+ ......+.. -..+++ .++|.+.++-.. .+.|+.++..
T Consensus 311 ~~~~~ag~~g~-~g---~--~dg--~~~~a~~~~------P~giav~~n~~y~~dd~~g~lyvaD~~---n~~I~~~~~~ 373 (433)
T 4hw6_A 311 VPYIVCGQHSS-PG---W--VDG--MGTGARLWG------PNQGIFVKNEAYAGEEDEYDFYFCDRD---SHTVRVLTPE 373 (433)
T ss_dssp CCEEEEECTTC-CC---C--BCE--EGGGSBCSS------EEEEEEEECGGGTTSSCCEEEEEEETT---TTEEEEECTT
T ss_pred cEEEEEecCCC-Cc---c--CCC--cccceEEcC------CccEEEEccccccccCCCCcEEEEECC---CCEEEEECCC
Confidence 00000000000 00 0 000 000000111 126788 677776666555 7889999876
Q ss_pred CceeEEEecC------------------CCceEEEEEe-cCCCeEEEEcCCCcEEEEecC
Q 008844 326 GYLVKILEGP------------------KEALIDLAWH-PVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 326 ~~~~~~l~~h------------------~~~v~~l~~s-p~~~~l~s~s~dg~i~iW~~~ 366 (551)
|...... +. -.....|++. +++.++++-..+++|+.++++
T Consensus 374 G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 374 GRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 7444333 21 0236789999 566666665667788877754
No 263
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.56 E-value=6.8e-05 Score=68.19 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=122.8
Q ss_pred cccEEEEEecCCCCEEEE-EeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce
Q 008844 67 VAAITSVCWSKYGHRILV-SAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST 145 (551)
Q Consensus 67 ~~~V~~l~~s~~g~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~ 145 (551)
...+..|+|.|++..|++ ...++.|...|+. ++.+..+.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~----------------------------------- 69 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV----------------------------------- 69 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-----------------------------------
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-----------------------------------
Confidence 467999999998665554 6668888889987 887777754321
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE---EEeee-----ccCcc
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI---RALVP-----VSGAA 217 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~---~~~~~-----~~~~~ 217 (551)
...-.+++.+++.++++.-.++.+.++++..... +.... ...+.
T Consensus 70 ----------------------------~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~ 121 (255)
T 3qqz_A 70 ----------------------------KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNC 121 (255)
T ss_dssp ----------------------------SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSS
T ss_pred ----------------------------CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccC
Confidence 0344556666665555544566777777654331 22221 12345
Q ss_pred ceEEEEEeeCCCEEEEeeCCCeEEEEeCcC-CccccchhhhhhhccCCCCCcceeeeeccceeeeeecc--cccccceee
Q 008844 218 VIKNIVFSRNGQYLLTNSNDRTIRIYDNLL-PLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFRE--FQDSITKMH 294 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~ 294 (551)
....|+|+|.++.|+++.......||.+.. +. ...+..+.. .........
T Consensus 122 g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~---------------------------~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 122 GFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS---------------------------SNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp CCEEEEEETTTTEEEEEEESSSEEEEEEESTTC---------------------------SSCCEEEECHHHHHTCCSSC
T ss_pred CcceEEEeCCCCEEEEEECcCCceEEEEccccc---------------------------CCceeeecchhhccccccCC
Confidence 678999999998777777655556665110 00 000111100 000011112
Q ss_pred eeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCC---------CceEEEEEecCCCeEEEEcCCCcEEEEec
Q 008844 295 WKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPK---------EALIDLAWHPVHPIIVSVSLTGWVYIWAK 365 (551)
Q Consensus 295 ~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~---------~~v~~l~~sp~~~~l~s~s~dg~i~iW~~ 365 (551)
...+++.|....|++-+.. ...|.++|..|+.+..+.-.. .....|+|.++|++.++ +.-+.++++..
T Consensus 175 ~S~l~~dp~tg~lliLS~~--s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHE--SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CCEEEEETTTTEEEEEETT--TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ceeEEEcCCCCeEEEEECC--CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 3488999855444444432 688999998887777665432 25688999999985444 66666666654
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.55 E-value=0.00021 Score=68.95 Aligned_cols=238 Identities=9% Similarity=-0.045 Sum_probs=137.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe-CCCCEEEEEcCCCeEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA-ADKSLTLWDVLKGEKI 102 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~ 102 (551)
...+|.+..+.+ +|+.+. ...|+..++........+.. ...+..|+|.+....|+.+. ..+.|..+++..+...
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~---~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN---LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC---CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence 344666666644 444443 35688888876555444433 34578999997665565544 4677777777544321
Q ss_pred EEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q 008844 103 TRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN 182 (551)
Q Consensus 103 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 182 (551)
..+.... ..+..+++.
T Consensus 109 ~~~~~~~----------------------------------------------------------------~~p~glavd 124 (349)
T 3v64_C 109 EVVSTGL----------------------------------------------------------------ESPGGLAVD 124 (349)
T ss_dssp EEECSSC----------------------------------------------------------------SCCCEEEEE
T ss_pred EEEeCCC----------------------------------------------------------------CCccEEEEe
Confidence 1111000 044567787
Q ss_pred eCCCEEE-EEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee-CC-CeEEEEeCcCCccccchhhhhh
Q 008844 183 KYGDLVY-VGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS-ND-RTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 183 ~~g~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s-~D-g~i~iwd~~~~~~~~~~~~~~~ 259 (551)
+.+..|+ +-...+.|.++++........+. ........|+++|.+..|+.+. .. +.|..++..
T Consensus 125 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d------------- 190 (349)
T 3v64_C 125 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD------------- 190 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-------------
T ss_pred cCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-------------
Confidence 7554444 44556789999987654433332 3345678999999666655544 34 667777611
Q ss_pred hccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCcee-EEEecCCC
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLV-KILEGPKE 337 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~-~~l~~h~~ 337 (551)
+.. ...+ ...-.. .+.++|+|++..|+.+... .+.|+.+++.|... ..+.....
T Consensus 191 ----------------G~~-~~~~~~~~~~~-----PnGla~d~~~~~lY~aD~~--~~~I~~~~~dG~~~~~~~~~~~~ 246 (349)
T 3v64_C 191 ----------------GSG-RRIIADTHLFW-----PNGLTIDYAGRRMYWVDAK--HHVIERANLDGSHRKAVISQGLP 246 (349)
T ss_dssp ----------------SCS-CEESCCSSCSC-----EEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSCS
T ss_pred ----------------CCC-cEEEEECCCCC-----cceEEEeCCCCEEEEEECC--CCEEEEEeCCCCceEEEEeCCCC
Confidence 110 1111 100011 1378999988888777653 57899999984333 33333344
Q ss_pred ceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 338 ALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 338 ~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
....|++ ..+.++++-...+.|..++..+++
T Consensus 247 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 247 HPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 5677887 344455555557778777754444
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.54 E-value=9.3e-06 Score=87.29 Aligned_cols=59 Identities=7% Similarity=0.050 Sum_probs=42.4
Q ss_pred eEEEEEEc-CCCCEEEEEeC-C----CeEEEEeccCC-ceeeE-eecccccccEEEEEecCCCCEEEEEeCC
Q 008844 25 VMKCIAFN-RRGTLLAAGCS-D----GSCVIWDFETR-GIAKE-LRDKECVAAITSVCWSKYGHRILVSAAD 88 (551)
Q Consensus 25 ~V~~l~fs-~dg~~latg~~-d----g~I~iwd~~~~-~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~s~d 88 (551)
.+...+|| |||++||.+.. + .+|+++|+.++ +.+.. + ......++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-----~~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-----SGTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-----EEECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-----cCceeeEEEecCCCEEEEEEEC
Confidence 57889999 99998886543 2 25999999988 63221 1 1224568899999888877654
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.51 E-value=7.9e-05 Score=77.16 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=95.1
Q ss_pred EEEEeCCCeEEEEeccCCceeeEeecccccc--cEEE-EEecCCCCEEEEEe------CCCCEEEEEcCCCeEEEEEEcC
Q 008844 38 LAAGCSDGSCVIWDFETRGIAKELRDKECVA--AITS-VCWSKYGHRILVSA------ADKSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 38 latg~~dg~I~iwd~~~~~~~~~~~~~~h~~--~V~~-l~~s~~g~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~ 108 (551)
|++++.|+.|.-+|..+|+.+.......+.. .+.+ .... ++ .+++++ .++.|..+|..+|+.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999887765432110 1211 1111 34 455554 3799999999999999988765
Q ss_pred CCee---------------------------------------EEEEecCCCCCcEEEEeeCC----------------C
Q 008844 109 QTPL---------------------------------------QARLHPGSSTPSLCLACPLS----------------S 133 (551)
Q Consensus 109 ~~~~---------------------------------------~~~~~p~~~~~~~~~~~~~~----------------~ 133 (551)
.... ...+.+. ..+++.+..+ +
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~---~g~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG---TNLIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT---TTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC---CCEEEEeCCCCccccCcccCCCccccc
Confidence 4321 1122222 1234444433 3
Q ss_pred CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe-eCC---CEEEEEecCceEEEEECCCCcEEE
Q 008844 134 APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN-KYG---DLVYVGNSKGEILVIDHKSNQIRA 209 (551)
Q Consensus 134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g---~~l~~g~~dg~i~i~d~~~~~~~~ 209 (551)
.+..+|..+++............-. .........+... .+| ..++.++.+|.++++|..+++.+.
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd-----------~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWD-----------YAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSC-----------CCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred eEEEEeCCCCceeeEeecCCCcccc-----------ccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 6888999998876443221110000 0000011222222 467 467778999999999999999977
Q ss_pred eee
Q 008844 210 LVP 212 (551)
Q Consensus 210 ~~~ 212 (551)
...
T Consensus 348 ~~~ 350 (599)
T 1w6s_A 348 ANK 350 (599)
T ss_dssp EEE
T ss_pred ccc
Confidence 664
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=0.00021 Score=70.15 Aligned_cols=236 Identities=9% Similarity=-0.050 Sum_probs=135.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE-eCCCCEEEEEcCCCeEEEEE
Q 008844 27 KCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS-AADKSLTLWDVLKGEKITRI 105 (551)
Q Consensus 27 ~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~~~~~ 105 (551)
+|.+..+. .+|+.+. ...|+.+++........+.. ...+..++|.+.+..|+.+ ...+.|..+++..+.....+
T Consensus 80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~---~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN---LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp CEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred eECCcccc-ceeEeec-CccceeeccCCCcEEEEecC---CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 45555553 3444443 35688888876655444433 3567899999765555544 44677888887654322211
Q ss_pred EcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC
Q 008844 106 VLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG 185 (551)
Q Consensus 106 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 185 (551)
.... ..+..+++.+.+
T Consensus 155 ~~~~----------------------------------------------------------------~~p~glavd~~~ 170 (386)
T 3v65_B 155 STGL----------------------------------------------------------------ESPGGLAVDWVH 170 (386)
T ss_dssp CSSC----------------------------------------------------------------SCCCCEEEETTT
T ss_pred eCCC----------------------------------------------------------------CCccEEEEEeCC
Confidence 1000 034567777655
Q ss_pred CEEE-EEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-C-CeEEEEeCcCCccccchhhhhhhcc
Q 008844 186 DLVY-VGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-D-RTIRIYDNLLPLKNGLEALVDIEKG 262 (551)
Q Consensus 186 ~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-D-g~i~iwd~~~~~~~~~~~~~~~~~~ 262 (551)
..|+ +-...+.|.++++........+. ........|+++|.+.+|+.+.. . +.|..++..
T Consensus 171 g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------------- 233 (386)
T 3v65_B 171 DKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------------- 233 (386)
T ss_dssp TEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT----------------
T ss_pred CeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC----------------
Confidence 4444 44456788888887554433332 33456789999987766665543 3 567777611
Q ss_pred CCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCce-eEEEecCCCceEE
Q 008844 263 IAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYL-VKILEGPKEALID 341 (551)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~-~~~l~~h~~~v~~ 341 (551)
+..........-.. .+.++|+|++..|+.+... .+.|+.+++.|.. ...+.........
T Consensus 234 -------------G~~~~~~~~~~~~~-----PnGlavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~~P~g 293 (386)
T 3v65_B 234 -------------GSGRRIIADTHLFW-----PNGLTIDYAGRRMYWVDAK--HHVIERANLDGSHRKAVISQGLPHPFA 293 (386)
T ss_dssp -------------SCSCEEEECSSCSC-----EEEEEEEGGGTEEEEEETT--TTEEEEECTTSCSCEEEECSSCSSEEE
T ss_pred -------------CCCcEEEEECCCCC-----eeeEEEeCCCCEEEEEECC--CCEEEEEeCCCCeeEEEEECCCCCceE
Confidence 11101111110111 1278999888877777653 6789999988433 3333333445677
Q ss_pred EEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 342 LAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 342 l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
|++ ..+.++++-...+.|..++..+++
T Consensus 294 iav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 294 ITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 888 344555555557778887754444
No 268
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=0.00051 Score=74.28 Aligned_cols=293 Identities=10% Similarity=0.099 Sum_probs=164.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecc-----cccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDK-----ECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK 98 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~-----~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~ 98 (551)
..|.++...++|.+.+ |+.++-|..|+..+++........ -....|.+|...++|.+.+ ++.. -|.+||..+
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCC
Confidence 4588888877776555 566656888998876543221100 0135689999888887555 4444 588999877
Q ss_pred CeEEEEEEc--------CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCC
Q 008844 99 GEKITRIVL--------QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDG 170 (551)
Q Consensus 99 ~~~~~~~~~--------~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (551)
+........ ...+.++...+++ .+..+...+.+.+++..++.............. . ......
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~--~----~~~~~~ 309 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDN----KLWIATELNGIMILDLQQNQFLLPEQIRFEFIR--E----GDNNYS 309 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTS----EEEEEESSSCEEEEETTCC---------CEEEC--B----CSSTTS
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCC----CEEEEeCCCCeEEECCCCCeeeeeecccccccc--C----CCCCCC
Confidence 654322111 1234455444433 456666667888898877654322110000000 0 000001
Q ss_pred CCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee--------ccCccceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 171 TPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP--------VSGAAVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 171 ~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~--------~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
.....|.++...++|. |.+|+.++-|..|+..+........ ......|.++...++|. |.+|+.++-|..
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~ 387 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINV 387 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEE
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEE
Confidence 1122688999888886 7778878889999988765433211 01245689998888776 556666666888
Q ss_pred EeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEE
Q 008844 243 YDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIW 322 (551)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iw 322 (551)
|+... .....+.. ........+.+++..++|.+.+ |+. .+-|..+
T Consensus 388 ~~~~~------------------------------~~~~~~~~-~~~~~~~~v~~i~~d~~g~lWi-gt~---~~Gl~~~ 432 (781)
T 3v9f_A 388 FENGK------------------------------RVAIYNKE-NRELLSNSVLCSLKDSEGNLWF-GTY---LGNISYY 432 (781)
T ss_dssp EETTE------------------------------EEEECC------CCCSBEEEEEECTTSCEEE-EET---TEEEEEE
T ss_pred EECCC------------------------------CeEEEccC-CCCCCCcceEEEEECCCCCEEE-Eec---cCCEEEE
Confidence 88110 00111100 0011111223777777777555 555 4668999
Q ss_pred ecC-CceeEEEe---cCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 323 DRA-GYLVKILE---GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 323 d~~-~~~~~~l~---~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+.. ++. ..+. .....|.++...+++.+.+... +-|.+|+..+.+
T Consensus 433 ~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 433 NTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKK 480 (781)
T ss_dssp CSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSS
T ss_pred cCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCe
Confidence 987 543 3332 1346789999888887665544 458888876543
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.47 E-value=0.00021 Score=74.04 Aligned_cols=73 Identities=21% Similarity=0.126 Sum_probs=48.8
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccc--cEE-EEEecC---CCC-EEEEEe------CCCCEEEEEcCCCeE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVA--AIT-SVCWSK---YGH-RILVSA------ADKSLTLWDVLKGEK 101 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~--~V~-~l~~s~---~g~-~l~s~s------~dg~i~vwd~~~~~~ 101 (551)
+..|++++.++.|.-+|..+|+.+.......+.. .+. +..... +|+ .|++++ .++.|..+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 4577788889999999999999887765432111 111 111111 233 566654 378999999999999
Q ss_pred EEEEEc
Q 008844 102 ITRIVL 107 (551)
Q Consensus 102 ~~~~~~ 107 (551)
+.....
T Consensus 197 ~W~~~~ 202 (582)
T 1flg_A 197 IWMRPF 202 (582)
T ss_dssp EEEEES
T ss_pred EeecCC
Confidence 987754
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.001 Score=63.20 Aligned_cols=228 Identities=11% Similarity=0.008 Sum_probs=137.0
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC----ceeeeccccCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG----STSILPIAVPDVA 156 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~~ 156 (551)
+|+.+. ...|+..|+........+.....+..+.|.+.+ ..++++-...+.|..+++... ....+ +. .
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~--~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-~~--~-- 74 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTV-IS--R-- 74 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEE-EC--S--
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCC--CEEEEEECCCCcEEEEECCCCCCCcccEEE-Ee--C--
Confidence 444444 356899999887766666555677888888754 235666666778888887752 11111 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE-ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG-NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
.-..+..+++++.+..|+.+ ...+.|.++++........+. ........++++|.+..|+.+.
T Consensus 75 ---------------~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d 138 (316)
T 1ijq_A 75 ---------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTD 138 (316)
T ss_dssp ---------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEE
T ss_pred ---------------CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEc
Confidence 00156788998766555544 567899999988655444332 2345678999999766665554
Q ss_pred CC--CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEcCCCCEEEEeec
Q 008844 236 ND--RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFSGDGEWVIAGSA 312 (551)
Q Consensus 236 ~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s~dg~~l~~gs~ 312 (551)
.. +.|..++.. +.....+ ...-.. .+.+++++++..|+.+..
T Consensus 139 ~~~~~~I~~~~~d------------------------------G~~~~~~~~~~~~~-----P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 139 WGTPAKIKKGGLN------------------------------GVDIYSLVTENIQW-----PNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp CSSSCEEEEEETT------------------------------SCCEEEEECSSCSC-----EEEEEEETTTTEEEEEET
T ss_pred cCCCCeEEEEcCC------------------------------CCCeEEEEECCCCC-----ceEEEEeccCCEEEEEEC
Confidence 43 577777611 1111111 110011 128899998888877765
Q ss_pred cCCcceEEEEecCCceeEEE-ec--CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 313 SKGEHKIYIWDRAGYLVKIL-EG--PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 313 ~~~dg~I~iwd~~~~~~~~l-~~--h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
. .+.|..+++.|.....+ .. .-.....|++. .+.++++-...+.|..++..+++.
T Consensus 184 ~--~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 184 K--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp T--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred C--CCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 2 57899999984433333 22 12346778875 355555555678888888765543
No 271
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=0.00047 Score=68.91 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=93.4
Q ss_pred eEEEEEEcCC-C-CEEEEEeCCCeEEEEeccCCceeeEeeccc-ccccEEEEEe-------cCCCCEEEEEeCCC-C---
Q 008844 25 VMKCIAFNRR-G-TLLAAGCSDGSCVIWDFETRGIAKELRDKE-CVAAITSVCW-------SKYGHRILVSAADK-S--- 90 (551)
Q Consensus 25 ~V~~l~fs~d-g-~~latg~~dg~I~iwd~~~~~~~~~~~~~~-h~~~V~~l~~-------s~~g~~l~s~s~dg-~--- 90 (551)
....|+|+|. + +++++-...+.|++.|+.++.+...+.... .......|+| ++++.+|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4578999983 4 444444444678899988777655543211 1235899999 99999777776543 2
Q ss_pred ---EEEEEcCC-CeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCC
Q 008844 91 ---LTLWDVLK-GEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNK 166 (551)
Q Consensus 91 ---i~vwd~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (551)
|.+++... |... .......+. . .
T Consensus 220 ~~~V~~i~r~~~G~~~----~~~~~~~v~---~--------------------------------~-------------- 246 (496)
T 3kya_A 220 SPSVYIIKRNADGTFD----DRSDIQLIA---A--------------------------------Y-------------- 246 (496)
T ss_dssp EEEEEEEECCTTSCCS----TTSCEEEEE---E--------------------------------E--------------
T ss_pred CceEEEEecCCCCcee----ecccceeec---c--------------------------------C--------------
Confidence 33333211 1100 000000000 0 0
Q ss_pred CCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECC-------CCcE-----------E-EeeeccCccceEEEEEee
Q 008844 167 YSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHK-------SNQI-----------R-ALVPVSGAAVIKNIVFSR 226 (551)
Q Consensus 167 ~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~-------~~~~-----------~-~~~~~~~~~~i~~l~~s~ 226 (551)
.....++++|++ .++++-..++.|+.+|+. ++.. . ..+........+.|+|+|
T Consensus 247 -------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p 319 (496)
T 3kya_A 247 -------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP 319 (496)
T ss_dssp -------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT
T ss_pred -------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC
Confidence 034567888854 555556678889999987 5543 1 122223345568999999
Q ss_pred CCCEEEEe-eCCCeEEEEe
Q 008844 227 NGQYLLTN-SNDRTIRIYD 244 (551)
Q Consensus 227 ~g~~l~t~-s~Dg~i~iwd 244 (551)
+|++|+.+ +....|+.++
T Consensus 320 ~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 320 TGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEe
Confidence 99965544 5577888866
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.36 E-value=9.1e-06 Score=86.06 Aligned_cols=227 Identities=12% Similarity=0.058 Sum_probs=121.8
Q ss_pred ccccccCCCCccceeecc-cccceEEEEEEcCCCCEEEEEeC-CCeEEEEeccCCceeeEeecccccccEEEEEecCCCC
Q 008844 3 APIIDPLQGDFPEVIEEY-LEHGVMKCIAFNRRGTLLAAGCS-DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGH 80 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~-~h~~~V~~l~fs~dg~~latg~~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~ 80 (551)
+.+||+.++......... .+.....++++..+|+++++|+. +..+.+||..++.....-.... ...-.+++..++++
T Consensus 221 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGR 299 (656)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSC
T ss_pred EEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCe
Confidence 567888887764432211 12223345778899999999984 4689999998876543322111 11223455667899
Q ss_pred EEEEEe-CC-----CCEEEEEcCCCeEEEEEE-----cCCCeeEEEEecCCCCCcEEEEeeCC---------CCcEEEEc
Q 008844 81 RILVSA-AD-----KSLTLWDVLKGEKITRIV-----LQQTPLQARLHPGSSTPSLCLACPLS---------SAPMIVDL 140 (551)
Q Consensus 81 ~l~s~s-~d-----g~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~---------~~i~i~d~ 140 (551)
+++.|+ .+ ..+.+||..++.....-. .........+.. +..+++.++.+ ..+..||.
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~Gg~~g~~~~~~~~~~v~~yd~ 376 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS---DNHAWLFGWKKGSVFQAGPSTAMNWYYT 376 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT---TCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec---CCceEEEECCCCcEEEecCccceeeeec
Confidence 999988 34 579999998876433200 000000000001 11233333333 34567777
Q ss_pred CCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee-CCCEEEEEecCc-----------eEEEEECCCCcEE
Q 008844 141 STGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK-YGDLVYVGNSKG-----------EILVIDHKSNQIR 208 (551)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g~~dg-----------~i~i~d~~~~~~~ 208 (551)
.+............ .... ......-.++.|.. +++++++|+.++ .|.+||..+..-.
T Consensus 377 ~~~~w~~~~~~~~~-~~~~----------~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 445 (656)
T 1k3i_A 377 SGSGDVKSAGKRQS-NRGV----------APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT 445 (656)
T ss_dssp STTCEEEEEEECEE-TTEE----------CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred CCcceeecCCcccc-cccc----------CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee
Confidence 76653321100000 0000 00000234444543 667788887543 6888998877654
Q ss_pred Eee--eccCccceEEEEEeeCCCEEEEeeCC-----------CeEEEEe
Q 008844 209 ALV--PVSGAAVIKNIVFSRNGQYLLTNSND-----------RTIRIYD 244 (551)
Q Consensus 209 ~~~--~~~~~~~i~~l~~s~~g~~l~t~s~D-----------g~i~iwd 244 (551)
... .......-.+++..|+++++++|+.+ ..+.+||
T Consensus 446 ~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd 494 (656)
T 1k3i_A 446 VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV 494 (656)
T ss_dssp EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence 432 21222223445667899999999864 4577888
No 273
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.33 E-value=0.0025 Score=60.80 Aligned_cols=274 Identities=10% Similarity=0.034 Sum_probs=141.2
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeec--ccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRD--KECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE 100 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~--~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~ 100 (551)
...+.+|.|.+.+..+|+| ..|.| ++..+.++.-..+.. ......+.+|.|.+ +. ++.++..+.|.. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence 3578999998888888855 56765 333333332222211 11245788999986 44 444455564433 222233
Q ss_pred EEEEEEc----CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 101 KITRIVL----QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 101 ~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
.-..+.. ......+.+.+.+ .++++...+.++ .....+..-... ... ....+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~g~v~-~S~DgG~tW~~~-~~~------------------~~~~~ 165 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNG----SAEMITNVGAIY-RTKDSGKNWQAL-VQE------------------AIGVM 165 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETT----EEEEEETTCCEE-EESSTTSSEEEE-ECS------------------CCCCE
T ss_pred CceECccccCCCCCeEEEEEECCC----CEEEEeCCccEE-EEcCCCCCCEEe-ecC------------------CCcce
Confidence 2222221 1234445544432 233444444332 222223221111 000 01157
Q ss_pred eEEEEeeCCCEEEEEecCceEEE-EECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchh
Q 008844 177 TAACFNKYGDLVYVGNSKGEILV-IDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEA 255 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i-~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~ 255 (551)
..+++.+++.+++++. .|.|+. .|- .+..-..+.......+..+++.++++.++ ++.+|.+++...
T Consensus 166 ~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~---------- 232 (327)
T 2xbg_A 166 RNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDP---------- 232 (327)
T ss_dssp EEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEET----------
T ss_pred EEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecC----------
Confidence 7889999888777665 454444 332 12221122224556788999999887654 446788777630
Q ss_pred hhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEec
Q 008844 256 LVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEG 334 (551)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~ 334 (551)
.++.....+... .......+..+++.+++.+++++. ++.| ++..+ |+.-..+..
T Consensus 233 -------------------D~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~----~g~i-~~S~DgG~tW~~~~~ 287 (327)
T 2xbg_A 233 -------------------DNSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGG----AGAL-LCSQDGGQTWQQDVD 287 (327)
T ss_dssp -------------------TEEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEES----TTCE-EEESSTTSSCEECGG
T ss_pred -------------------CCCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeC----CCeE-EEeCCCCcccEEcCc
Confidence 001111111100 000001123778888888877766 4666 44555 665555542
Q ss_pred ---CCCceEEEEEecCCCeEEEEcCCCcEEEEe
Q 008844 335 ---PKEALIDLAWHPVHPIIVSVSLTGWVYIWA 364 (551)
Q Consensus 335 ---h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~ 364 (551)
+...+.++.|.+++. +++++.+|.|.-++
T Consensus 288 ~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 288 VKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp GTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred cCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 245688999986554 66667789776655
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.31 E-value=0.00033 Score=66.31 Aligned_cols=204 Identities=13% Similarity=0.097 Sum_probs=114.8
Q ss_pred ccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceee
Q 008844 68 AAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSI 147 (551)
Q Consensus 68 ~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 147 (551)
.....++|+++++++++-...+.|..||... .....+....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~-------------------------------------- 72 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEG-------------------------------------- 72 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSS--------------------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCC--------------------------------------
Confidence 4577899999998666666778888888653 3222221110
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC--ceEEEEECCCCcEEEeeeccCccceEEEEEe
Q 008844 148 LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK--GEILVIDHKSNQIRALVPVSGAAVIKNIVFS 225 (551)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d--g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s 225 (551)
.+..++++++|+++++.... ..|..++..+++...............++..
T Consensus 73 ---------------------------~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~ 125 (306)
T 2p4o_A 73 ---------------------------KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL 125 (306)
T ss_dssp ---------------------------EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES
T ss_pred ---------------------------CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCccccc
Confidence 46678888888865554332 3577788888876544332233334556655
Q ss_pred eCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCC
Q 008844 226 RNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGE 305 (551)
Q Consensus 226 ~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~ 305 (551)
+++..+++....+.|.++|..... ... .... .. +...... .... ..+.+ +++++
T Consensus 126 ~~~~~~v~d~~~g~i~~~d~~~~~---~~v----------------~~~~-~~-~~~~~~~-~~~~--~pngi--s~dg~ 179 (306)
T 2p4o_A 126 SDTQYLTADSYRGAIWLIDVVQPS---GSI----------------WLEH-PM-LARSNSE-SVFP--AANGL--KRFGN 179 (306)
T ss_dssp SSSEEEEEETTTTEEEEEETTTTE---EEE----------------EEEC-GG-GSCSSTT-CCSC--SEEEE--EEETT
T ss_pred CCCcEEEEECCCCeEEEEeCCCCc---EeE----------------EEEC-Cc-ccccccc-CCCC--cCCCc--CcCCC
Confidence 555545555568888888821100 000 0000 00 0000000 0000 01133 88888
Q ss_pred EEEEeeccCCcceEEEEecC--Cce--eEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 306 WVIAGSASKGEHKIYIWDRA--GYL--VKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 306 ~l~~gs~~~~dg~I~iwd~~--~~~--~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
+|+.+... .+.|++|++. +.+ ...+.. ......|++.++|+++++....+.|.+++..
T Consensus 180 ~lyv~d~~--~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 180 FLYVSNTE--KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEEEETT--TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EEEEEeCC--CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 87776653 6889999987 322 122211 1345678999999876666667788888754
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.31 E-value=0.0026 Score=60.32 Aligned_cols=181 Identities=12% Similarity=0.014 Sum_probs=111.4
Q ss_pred EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe-CCCCEEEEEcCC---CeEEEE-EEc-CCC
Q 008844 37 LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA-ADKSLTLWDVLK---GEKITR-IVL-QQT 110 (551)
Q Consensus 37 ~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~vwd~~~---~~~~~~-~~~-~~~ 110 (551)
+|+.+.. ..|+..++.+......+.. ...+.+++|.+.+..|+.+. ..+.|..+++.. +..... +.. -..
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~---~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC---CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 3444443 5689999988776555543 45678999998765555554 468899999865 122222 221 134
Q ss_pred eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEE
Q 008844 111 PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYV 190 (551)
Q Consensus 111 ~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 190 (551)
+..+++.+.+ ..++++-...+.|.++++.......+... ....+..++++|.+..|+.
T Consensus 79 p~glavd~~~--~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--------------------~~~~P~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 79 PDGLAVDWIH--SNIYWTDSVLGTVSVADTKGVKRKTLFRE--------------------NGSKPRAIVVDPVHGFMYW 136 (316)
T ss_dssp CCEEEEETTT--TEEEEEETTTTEEEEEETTSSSEEEEEEC--------------------TTCCEEEEEEETTTTEEEE
T ss_pred cCEEEEeecC--CeEEEEECCCCEEEEEeCCCCceEEEEEC--------------------CCCCcceEEeCCCCCEEEE
Confidence 5677777543 23556666777888888775543322110 0016789999997766666
Q ss_pred EecC--ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEe
Q 008844 191 GNSK--GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYD 244 (551)
Q Consensus 191 g~~d--g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd 244 (551)
+... +.|..+++.......... ..-.....|++++++..|+.+ +..+.|..++
T Consensus 137 ~d~~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d 192 (316)
T 1ijq_A 137 TDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSID 192 (316)
T ss_dssp EECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EccCCCCeEEEEcCCCCCeEEEEE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEe
Confidence 5542 789999886543322221 234567899999877666555 4567899998
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.003 Score=62.05 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=133.2
Q ss_pred EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe-CCCCEEEEEcCCCeE---EEEEEcCCCee
Q 008844 37 LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA-ADKSLTLWDVLKGEK---ITRIVLQQTPL 112 (551)
Q Consensus 37 ~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~---~~~~~~~~~~~ 112 (551)
+|+.+. ...|+..++........+.. ...+..|+|.+.+..|+.+. ..+.|..+++..... ...+..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~---~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~----- 155 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----- 155 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS---CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-----
T ss_pred eeEEec-cceeEEEccCCcceeEeccc---cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-----
Confidence 455443 46899999887665544432 46788999998666565554 456777777643210 000000
Q ss_pred EEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEE-EE
Q 008844 113 QARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVY-VG 191 (551)
Q Consensus 113 ~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~g 191 (551)
. ....+..+++.+.+..|+ +-
T Consensus 156 -----~-----------------------------------------------------~~~~p~glavD~~~~~lY~~d 177 (400)
T 3p5b_L 156 -----R-----------------------------------------------------DIQAPDGLAVDWIHSNIYWTD 177 (400)
T ss_dssp -----S-----------------------------------------------------SCSCEEEEEEETTTTEEEEEE
T ss_pred -----C-----------------------------------------------------CCCCcccEEEEecCCceEEEE
Confidence 0 000566788887554444 44
Q ss_pred ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC--CCeEEEEeCcCCccccchhhhhhhccCCCCCcc
Q 008844 192 NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN--DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGI 269 (551)
Q Consensus 192 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (551)
...+.|.+.++........+. ........|+++|.+.+|+.... .+.|...++.
T Consensus 178 ~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d----------------------- 233 (400)
T 3p5b_L 178 SVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN----------------------- 233 (400)
T ss_dssp TTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-----------------------
T ss_pred CCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-----------------------
Confidence 567889999988766544443 34455789999997666665543 3567777611
Q ss_pred eeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEE-ec--CCCceEEEEEec
Q 008844 270 EKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKIL-EG--PKEALIDLAWHP 346 (551)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l-~~--h~~~v~~l~~sp 346 (551)
+..........-... +.+++++++..|+.+... .+.|+.+++.|.....+ .. .-.....|++.
T Consensus 234 ------G~~~~~~~~~~l~~P-----~glavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~- 299 (400)
T 3p5b_L 234 ------GVDIYSLVTENIQWP-----NGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF- 299 (400)
T ss_dssp ------SCSCEEEECSSCSCE-----EEEEEETTTTEEEEEETT--TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-
T ss_pred ------CCccEEEEECCCCce-----EEEEEEeCCCEEEEEECC--CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-
Confidence 111111111100111 278999988888877653 57899999984433333 32 22345677763
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 347 VHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 347 ~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
.+.++++-...+.|..++..+++..
T Consensus 300 ~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 300 EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CCEEEEecCCCCeEEEEEcCCCCce
Confidence 3345555555778888886665543
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.27 E-value=0.00042 Score=67.88 Aligned_cols=216 Identities=8% Similarity=0.010 Sum_probs=119.8
Q ss_pred ceEEEEEEcCCCCEEE-EEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEE-EeCCCCEEEEEcCCCeE
Q 008844 24 GVMKCIAFNRRGTLLA-AGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILV-SAADKSLTLWDVLKGEK 101 (551)
Q Consensus 24 ~~V~~l~fs~dg~~la-tg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~s~dg~i~vwd~~~~~~ 101 (551)
..+..++|++.+..|+ +-...+.|..+++........+... ......|++.+.+..|+. -...+.|.+.++.....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~--~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS--CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC--CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence 4577899997655554 4455688999998866543333322 234566777765444444 34456666666543221
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
...+... -..+..+++
T Consensus 194 ~~l~~~~----------------------------------------------------------------l~~P~giav 209 (386)
T 3v65_B 194 KVLLWQS----------------------------------------------------------------LEKPRAIAL 209 (386)
T ss_dssp EEEECSS----------------------------------------------------------------CSCEEEEEE
T ss_pred EEeecCC----------------------------------------------------------------CCCCcEEEE
Confidence 1111000 005677888
Q ss_pred eeCCCEEEEEec-C-ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEeCcCCccccchhhhh
Q 008844 182 NKYGDLVYVGNS-K-GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYDNLLPLKNGLEALVD 258 (551)
Q Consensus 182 s~~g~~l~~g~~-d-g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~~ 258 (551)
+|.+..|+.+.. . +.|..+++.......... ..-.....|+|+|++..|+.+ +..+.|..+++..
T Consensus 210 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG----------- 277 (386)
T 3v65_B 210 HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG----------- 277 (386)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-----------
T ss_pred EcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-----------
Confidence 887666665543 3 688888887554433332 334457889999876665554 4567888888211
Q ss_pred hhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCC
Q 008844 259 IEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKE 337 (551)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~ 337 (551)
......+........ .+++. .+ .|+.+... .+.|..++.. |..+..+.....
T Consensus 278 ------------------~~~~~~~~~~~~~P~-----giav~-~~-~ly~td~~--~~~V~~~~~~~G~~~~~i~~~~~ 330 (386)
T 3v65_B 278 ------------------SHRKAVISQGLPHPF-----AITVF-ED-SLYWTDWH--TKSINSANKFTGKNQEIIRNKLH 330 (386)
T ss_dssp ------------------CSCEEEECSSCSSEE-----EEEEE-TT-EEEEEETT--TTEEEEEETTTCCSCEEEECSCS
T ss_pred ------------------CeeEEEEECCCCCce-----EEEEE-CC-EEEEeeCC--CCeEEEEECCCCcceEEEccCCC
Confidence 000111110001111 56662 33 44444432 6889999855 777777765544
Q ss_pred ceEEEEE
Q 008844 338 ALIDLAW 344 (551)
Q Consensus 338 ~v~~l~~ 344 (551)
....|++
T Consensus 331 ~p~gi~v 337 (386)
T 3v65_B 331 FPMDIHT 337 (386)
T ss_dssp CCCCEEE
T ss_pred CCceEEE
Confidence 5555554
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.27 E-value=0.00078 Score=64.96 Aligned_cols=154 Identities=6% Similarity=0.062 Sum_probs=92.3
Q ss_pred ceEEEEEEcCCCCEEEEE-eCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEE-EEEeCCCCEEEEEcCCCeE
Q 008844 24 GVMKCIAFNRRGTLLAAG-CSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRI-LVSAADKSLTLWDVLKGEK 101 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg-~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~s~dg~i~vwd~~~~~~ 101 (551)
..+..++|++....|+.. ...+.|..+++........+... ......|++.+.+..| ++-...+.|.+.++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~--~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC--CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 346789999765555544 45688999998865543333221 2445678887754444 4444466777777643221
Q ss_pred EEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEE
Q 008844 102 ITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACF 181 (551)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (551)
...+... -..+..+++
T Consensus 151 ~~l~~~~----------------------------------------------------------------l~~P~~iav 166 (349)
T 3v64_C 151 KVLLWQS----------------------------------------------------------------LEKPRAIAL 166 (349)
T ss_dssp EEEECTT----------------------------------------------------------------CSCEEEEEE
T ss_pred EEEEeCC----------------------------------------------------------------CCCcceEEE
Confidence 1111000 005677888
Q ss_pred eeCCCEEEEEe-cC-ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEe
Q 008844 182 NKYGDLVYVGN-SK-GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYD 244 (551)
Q Consensus 182 s~~g~~l~~g~-~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd 244 (551)
+|.+..|+.+. .. +.|..+++.......... ..-.....|+|+|++..|+.+ +..+.|..++
T Consensus 167 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 167 HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 88665555544 34 788888887544333322 234457899999876666555 4567888888
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.24 E-value=0.0022 Score=63.11 Aligned_cols=154 Identities=11% Similarity=0.013 Sum_probs=92.5
Q ss_pred ceEEEEEEcCCCCEEEEE-eCCCeEEEEeccCC----ceeeEeecccccccEEEEEecCCCCEE-EEEeCCCCEEEEEcC
Q 008844 24 GVMKCIAFNRRGTLLAAG-CSDGSCVIWDFETR----GIAKELRDKECVAAITSVCWSKYGHRI-LVSAADKSLTLWDVL 97 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg-~~dg~I~iwd~~~~----~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~s~dg~i~vwd~~ 97 (551)
..+..|+|++.+..|+.. ...+.|+.+++... .....+... ......|++.+.+..| ++-...+.|.+.++.
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~--~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC--CCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 567899999866555554 45688988888752 222222212 4567788888744444 444456777777765
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
.......+.... ..+.
T Consensus 190 g~~~~~l~~~~~----------------------------------------------------------------~~P~ 205 (400)
T 3p5b_L 190 GVKRKTLFRENG----------------------------------------------------------------SKPR 205 (400)
T ss_dssp TCSEEEEEECSS----------------------------------------------------------------CCEE
T ss_pred CCceEEEEeCCC----------------------------------------------------------------CCcc
Confidence 433222211100 0456
Q ss_pred EEEEeeCCCEEEEEec--CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEe
Q 008844 178 AACFNKYGDLVYVGNS--KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYD 244 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd 244 (551)
.++++|.+.+|+.+.. .+.|...++........+. ..-.....|++++++..|+.+ +..+.|..++
T Consensus 206 ~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d 274 (400)
T 3p5b_L 206 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSID 274 (400)
T ss_dssp EEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence 7788876666665542 3678888887554433332 333567899999877766665 4467888888
No 280
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.21 E-value=0.0003 Score=67.11 Aligned_cols=192 Identities=15% Similarity=0.071 Sum_probs=120.5
Q ss_pred eEEEEEEcC-CCCEEEEEeCCCeEEEEeccCCceeeEeecc---cccccEEEEEecC-CCCEEEEEeC------------
Q 008844 25 VMKCIAFNR-RGTLLAAGCSDGSCVIWDFETRGIAKELRDK---ECVAAITSVCWSK-YGHRILVSAA------------ 87 (551)
Q Consensus 25 ~V~~l~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~~~~---~h~~~V~~l~~s~-~g~~l~s~s~------------ 87 (551)
.+.+|++.+ +|++++ +...+.|.++|..++.. ..+... ........+++.+ +|++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTEEEE-EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 578899997 665554 44445588888775543 222211 0123478899999 9987666432
Q ss_pred -----CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce---eeeccccCCCCCCC
Q 008844 88 -----DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST---SILPIAVPDVANGI 159 (551)
Q Consensus 88 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~~~~ 159 (551)
.+.|..||..++........-..+..++++|++. .++++-...+.|..|++..... ..+. .
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~--~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~-------- 227 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS--FVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K-------- 227 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSS--EEEEEEGGGTEEEEEESSSTTTTCEEEEE-E--------
T ss_pred cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCC--EEEEEeCCCCeEEEEECCCCcCCccceEE-e--------
Confidence 3678888887776543333334456788888753 2455556678899998875321 1100 0
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec----------CceEEEEECCCCcEEEeeeccC---ccceEEEEEee
Q 008844 160 APSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS----------KGEILVIDHKSNQIRALVPVSG---AAVIKNIVFSR 226 (551)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~----------dg~i~i~d~~~~~~~~~~~~~~---~~~i~~l~~s~ 226 (551)
.. .+..+++.++|++.++... .+.|..+|.. ++.+..+.... ...++++++ .
T Consensus 228 ------------~~-gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~ 292 (322)
T 2fp8_A 228 ------------IP-NPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-H 292 (322)
T ss_dssp ------------CS-SEEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-E
T ss_pred ------------CC-CCCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-e
Confidence 01 1567899999986665544 4778999874 66666664332 234666766 4
Q ss_pred CCCEEEEeeCCCeEEEEe
Q 008844 227 NGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 227 ~g~~l~t~s~Dg~i~iwd 244 (551)
+++++++....+.|.+++
T Consensus 293 ~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 293 DGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp TTEEEEECSSCSEEEEEE
T ss_pred CCEEEEeecCCCceEEEe
Confidence 666666666788899998
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.18 E-value=0.0028 Score=57.54 Aligned_cols=200 Identities=6% Similarity=0.053 Sum_probs=124.5
Q ss_pred ceEEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe--
Q 008844 24 GVMKCIAFNRRGTLL-AAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-- 100 (551)
Q Consensus 24 ~~V~~l~fs~dg~~l-atg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-- 100 (551)
..+..|+|+|++..| ++...++.|...|.. ++.++.+...+ ....-.|++.+++.++++.-.++.+.++++....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 469999999976644 456778899999998 88888875432 3567888999888877776567889999876544
Q ss_pred -EEEEEEcC-------CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC----CceeeeccccCCCCCCCCCCCCCCCC
Q 008844 101 -KITRIVLQ-------QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST----GSTSILPIAVPDVANGIAPSSRNKYS 168 (551)
Q Consensus 101 -~~~~~~~~-------~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
.+...... ...-.+++.|.+. .++++...+ ...+|.+.. .......... ..
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~--~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~--------------~~ 167 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDH--TFWFFKEKN-PIEVYKVNGLLSSNELHISKDKA--------------LQ 167 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTT--EEEEEEESS-SEEEEEEESTTCSSCCEEEECHH--------------HH
T ss_pred eeeeeeccccccccccCCcceEEEeCCCC--EEEEEECcC-CceEEEEcccccCCceeeecchh--------------hc
Confidence 23333321 1236889998753 344444444 334444431 1011100000 00
Q ss_pred CCCCCCCceEEEEeeCCCE-EEEEecCceEEEEECCCCcEEEeeeccCc--------cceEEEEEeeCCCEEEEeeCCCe
Q 008844 169 DGTPPFTPTAACFNKYGDL-VYVGNSKGEILVIDHKSNQIRALVPVSGA--------AVIKNIVFSRNGQYLLTNSNDRT 239 (551)
Q Consensus 169 ~~~~~~~i~~~~~s~~g~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~~--------~~i~~l~~s~~g~~l~t~s~Dg~ 239 (551)
.......+.+++++|.... ++.......|.++|... +.+..+.+... ..--.|+|.++|++.+ .+.-+.
T Consensus 168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~ 245 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNR 245 (255)
T ss_dssp HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTE
T ss_pred cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCce
Confidence 0001125789999997654 55555677899999764 46555544321 3568999999998444 467777
Q ss_pred EEEEe
Q 008844 240 IRIYD 244 (551)
Q Consensus 240 i~iwd 244 (551)
++.|.
T Consensus 246 ~y~f~ 250 (255)
T 3qqz_A 246 FYRFT 250 (255)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.18 E-value=0.00012 Score=78.61 Aligned_cols=67 Identities=7% Similarity=0.001 Sum_probs=45.1
Q ss_pred EEEEeeCCCEEEEEecC-----ceEEEEECCCCcE--EEeeeccCccceEEEEEeeCCCEEEEeeC---CCeEEEEe
Q 008844 178 AACFNKYGDLVYVGNSK-----GEILVIDHKSNQI--RALVPVSGAAVIKNIVFSRNGQYLLTNSN---DRTIRIYD 244 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~d-----g~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~t~s~---Dg~i~iwd 244 (551)
.++|+|+|+.|+....+ ..|+++++.++.. ...+..........+.|+|+|++|+..+. ...|+++|
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence 56789999877776654 3688889887642 23332233345678899999999887653 33567777
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.15 E-value=0.0038 Score=59.20 Aligned_cols=181 Identities=11% Similarity=-0.012 Sum_probs=110.3
Q ss_pred EEEEEeCCCeEEEEeccCCc--eeeEeecccccccEEEEEecCCCCEEEEE-eCCCCEEEEEcCCCeE--EEEEEcCCCe
Q 008844 37 LLAAGCSDGSCVIWDFETRG--IAKELRDKECVAAITSVCWSKYGHRILVS-AADKSLTLWDVLKGEK--ITRIVLQQTP 111 (551)
Q Consensus 37 ~latg~~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~--~~~~~~~~~~ 111 (551)
+|+.+. ...|+.+++.... ....+.. ...+.+|.|.+.+..|+.+ ...+.|..+++..+.. ......-..+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~---~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGG---LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEE---EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecC---CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 344443 4679999998664 2222222 3457799999865555444 4578899999876532 1111222345
Q ss_pred eEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE
Q 008844 112 LQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG 191 (551)
Q Consensus 112 ~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g 191 (551)
..+++.+.+ ..++++-...+.|.++++.......+... .-..+..+++.|.+..|+.+
T Consensus 82 ~glavd~~~--g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--------------------~~~~P~giavdp~~g~ly~t 139 (318)
T 3sov_A 82 DGLACDWLG--EKLYWTDSETNRIEVSNLDGSLRKVLFWQ--------------------ELDQPRAIALDPSSGFMYWT 139 (318)
T ss_dssp CEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECS--------------------SCSSEEEEEEEGGGTEEEEE
T ss_pred cEEEEEcCC--CeEEEEECCCCEEEEEECCCCcEEEEEeC--------------------CCCCccEEEEeCCCCEEEEE
Confidence 667777643 33556666677788888776543322110 01167899999977677766
Q ss_pred ec--CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEe
Q 008844 192 NS--KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYD 244 (551)
Q Consensus 192 ~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd 244 (551)
.. .+.|..+++.......... ..-.....|+|++++..|+.+ +..+.|..++
T Consensus 140 d~~~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 140 DWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp ECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecCCCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 53 5789999987543333322 233456889999976666555 4577898888
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.13 E-value=0.0012 Score=62.44 Aligned_cols=206 Identities=13% Similarity=0.164 Sum_probs=122.0
Q ss_pred CCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecC----CCCCcEEEEeeC---CCCcEEEEcC--CCceeeec
Q 008844 79 GHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPG----SSTPSLCLACPL---SSAPMIVDLS--TGSTSILP 149 (551)
Q Consensus 79 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~---~~~i~i~d~~--~~~~~~~~ 149 (551)
..+++.....+-+.+||+ +|+.+..+.. .....+.+.|+ +...-++++... .+++.+|++. ++....+.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 456666667788999999 8999888764 34455555442 211113344443 5789999774 33322220
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEE--eeC-CC-EEEEEecCceEEEEECC-------CCcEEEeeeccCccc
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACF--NKY-GD-LVYVGNSKGEILVIDHK-------SNQIRALVPVSGAAV 218 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~-g~-~l~~g~~dg~i~i~d~~-------~~~~~~~~~~~~~~~ 218 (551)
...... ......+..+|+ ++. +. ++++...+|.+..|++. +.+.+..+. ..+.
T Consensus 118 ~~~~pv--------------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq 181 (355)
T 3amr_A 118 DPDHPI--------------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQ 181 (355)
T ss_dssp CTTSCE--------------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSC
T ss_pred ccccCc--------------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCC
Confidence 000000 000026677787 664 43 68888889999999882 335566664 3467
Q ss_pred eEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee--cccccccceeeee
Q 008844 219 IKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF--REFQDSITKMHWK 296 (551)
Q Consensus 219 i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~ 296 (551)
+..++..+....|+++-.+.-|..|+ ..|.... ....+..+ ..+...+.
T Consensus 182 ~EgcvvDd~~g~Lyv~eEd~GIw~~d-a~p~~~~-----------------------~~~~v~~~~~g~l~aDvE----- 232 (355)
T 3amr_A 182 TEGMAADDEYGRLYIAEEDEAIWKFS-AEPDGGS-----------------------NGTVIDRADGRHLTRDIE----- 232 (355)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEE-CSTTSCS-----------------------CCEEEEEBSSSSBCSCEE-----
T ss_pred cceEEEcCCCCeEEEecccceEEEEe-CCcCCCC-----------------------CceEEEEecCCccccCcc-----
Confidence 88999999888999999987666665 1111000 01112111 11222333
Q ss_pred eeEE--cCCCC-EEEEeeccCCcceEEEEecC--CceeEEEe
Q 008844 297 APCF--SGDGE-WVIAGSASKGEHKIYIWDRA--GYLVKILE 333 (551)
Q Consensus 297 ~~~~--s~dg~-~l~~gs~~~~dg~I~iwd~~--~~~~~~l~ 333 (551)
.+++ .++|+ ||++++.. ++.+.||+.. .+.+..+.
T Consensus 233 GLai~~~~~g~gyLivSsQG--~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 233 GLTIYYAADGKGYLMASSQG--NSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEECGGGCEEEEEEEGG--GTEEEEEESSTTCCEEEEEE
T ss_pred eEEEEecCCCCEEEEEEcCC--CCEEEEEECCCCCcEEEEEE
Confidence 4455 56667 78888762 6799999996 56666664
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.12 E-value=0.004 Score=59.01 Aligned_cols=230 Identities=10% Similarity=0.010 Sum_probs=130.2
Q ss_pred EEEEEeCCCCEEEEEcCCCe--EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGE--KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANG 158 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 158 (551)
+|+.+. ...|+.+++.... ....+.....+..+.|.+.. ..++++-...+.|..+++..+.........
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~--~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~------ 76 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH--GLIYWSDVSEEAIKRTEFNKTESVQNVVVS------ 76 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG--TEEEEEETTTTEEEEEETTSSSCCCEEEEE------
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC--CEEEEEECCCCcEEEEEccCCCceEEEEcC------
Confidence 344433 4678888886653 22222222345667777643 235555555666777777655321100000
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeCCCEEE-EEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-
Q 008844 159 IAPSSRNKYSDGTPPFTPTAACFNKYGDLVY-VGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN- 236 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~- 236 (551)
.-..+..+++.+.+..|+ +-...+.|.++++........+. ........|++.|.+.+|+.+..
T Consensus 77 -------------~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~ly~td~~ 142 (318)
T 3sov_A 77 -------------GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWG 142 (318)
T ss_dssp -------------CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTEEEEEECS
T ss_pred -------------CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCEEEEEecC
Confidence 001566889987555454 44567899999987654433332 34456789999997666665543
Q ss_pred -CCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCC
Q 008844 237 -DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKG 315 (551)
Q Consensus 237 -Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~ 315 (551)
.+.|..++.. +.........--.. -+.+++++++..|+.+...
T Consensus 143 ~~~~I~r~~~d-----------------------------G~~~~~~~~~~l~~-----Pnglavd~~~~~lY~aD~~-- 186 (318)
T 3sov_A 143 EVPKIERAGMD-----------------------------GSSRFIIINSEIYW-----PNGLTLDYEEQKLYWADAK-- 186 (318)
T ss_dssp SSCEEEEEETT-----------------------------SCSCEEEECSSCSC-----EEEEEEETTTTEEEEEETT--
T ss_pred CCCEEEEEEcC-----------------------------CCCeEEEEECCCCC-----ccEEEEeccCCEEEEEECC--
Confidence 4667777611 11001111100001 1388999988888777653
Q ss_pred cceEEEEecCCceeEEE-ecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCc
Q 008844 316 EHKIYIWDRAGYLVKIL-EGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTEN 370 (551)
Q Consensus 316 dg~I~iwd~~~~~~~~l-~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~ 370 (551)
.+.|+.+++.|.....+ .+.......|++.. +.++.+-...+.|..++..+++.
T Consensus 187 ~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 68899999984333333 33345567777753 34555555578888888766553
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.10 E-value=0.0038 Score=66.72 Aligned_cols=181 Identities=12% Similarity=0.006 Sum_probs=114.0
Q ss_pred EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE-eCCCCEEEEEcCCC----eEEEEEE-cCCC
Q 008844 37 LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS-AADKSLTLWDVLKG----EKITRIV-LQQT 110 (551)
Q Consensus 37 ~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~----~~~~~~~-~~~~ 110 (551)
+|+.+. ...|+..++........+.. ...+..|+|.+....|+.+ ...+.|..+++... .....+. ....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~---~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred cccccc-ccceeEeeccCCcceeeecC---CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 444443 35688888876655444433 4667899999865555544 44678888888642 1222222 2234
Q ss_pred eeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEE
Q 008844 111 PLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYV 190 (551)
Q Consensus 111 ~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 190 (551)
+..+++.+.+ ..++++-...+.|.+.++.......+.... -..+..|+++|.+.+|+.
T Consensus 473 P~GLAvD~~~--~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~--------------------l~~P~gIaVDp~~g~LYw 530 (791)
T 3m0c_C 473 PDGLAVDWIH--SNIYWTDSVLGTVSVADTKGVKRKTLFREN--------------------GSKPRAIVVDPVHGFMYW 530 (791)
T ss_dssp CCEEEEETTT--TEEEEEETTTTEEEEEETTSSSEEEEEECT--------------------TCCEEEEEEETTTTEEEE
T ss_pred cceeeeeecC--CcEEEEecCCCeEEEEeCCCCeEEEEEeCC--------------------CCCcceEEEecCCCCEEE
Confidence 6677887754 346677777788888888766544332110 015789999998767766
Q ss_pred Eec--CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe-eCCCeEEEEe
Q 008844 191 GNS--KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN-SNDRTIRIYD 244 (551)
Q Consensus 191 g~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~-s~Dg~i~iwd 244 (551)
+.. .+.|.+.++........+. ..-.....|++++.+..|+.+ ...+.|..++
T Consensus 531 tD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 531 TDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp EECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 653 3789999987655544442 334578899999876666655 4466788887
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.08 E-value=0.0011 Score=62.09 Aligned_cols=201 Identities=8% Similarity=0.072 Sum_probs=120.1
Q ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeE-eec----ccccccEEEEEe---cCCCCEEEEEe----------
Q 008844 26 MKCIAFNRRGTLLAAGC-SDGSCVIWDFETRGIAKE-LRD----KECVAAITSVCW---SKYGHRILVSA---------- 86 (551)
Q Consensus 26 V~~l~fs~dg~~latg~-~dg~I~iwd~~~~~~~~~-~~~----~~h~~~V~~l~~---s~~g~~l~s~s---------- 86 (551)
-.|++|.+....|..++ ..++|..|+...+..... +.. ......+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34778987554555454 789999999986654333 211 001224689999 58877777543
Q ss_pred ---CCCCEEEEEcC---CCeEEEEEEcC------------C--CeeEEEEecCCCCCcEEEEeeCC-CCcEEEEcCCCce
Q 008844 87 ---ADKSLTLWDVL---KGEKITRIVLQ------------Q--TPLQARLHPGSSTPSLCLACPLS-SAPMIVDLSTGST 145 (551)
Q Consensus 87 ---~dg~i~vwd~~---~~~~~~~~~~~------------~--~~~~~~~~p~~~~~~~~~~~~~~-~~i~i~d~~~~~~ 145 (551)
.+..|..||+. +++.+....+. . ....+...+++. ..++.+.. +.|..++......
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn---aYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN---SYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC---EEEEEEESSCEEEEECTTSCCE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC---EEEeCCCCCCeEEEEeCCCCEE
Confidence 15779999998 88877776642 1 244566666543 56666666 6666666655433
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcE--EEeeecc---CccceE
Q 008844 146 SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQI--RALVPVS---GAAVIK 220 (551)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~---~~~~i~ 220 (551)
..+...... .......+.++++|+|+.|++....|.|..+|+.+... +.....+ ......
T Consensus 172 ~~~~~~~~~---------------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~d 236 (334)
T 2p9w_A 172 STFAWESGN---------------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTE 236 (334)
T ss_dssp EEEEECCCC---------------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEE
T ss_pred eeeeecCCC---------------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcc
Confidence 322211110 00112678999999999999988899999999885432 2111001 112234
Q ss_pred EE-EEeeCCCEEE-EeeCCCeEEEEe
Q 008844 221 NI-VFSRNGQYLL-TNSNDRTIRIYD 244 (551)
Q Consensus 221 ~l-~~s~~g~~l~-t~s~Dg~i~iwd 244 (551)
.| ..-.+|+.|+ +....+.+.+.+
T Consensus 237 gilp~~~~G~vllV~~~~~~~~~l~S 262 (334)
T 2p9w_A 237 KIVTVPVGNESVLVGARAPYAISFRS 262 (334)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEC
T ss_pred cccccccCCEEEEEEcCCCCEEEEEC
Confidence 43 3345787744 444566555554
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.96 E-value=0.015 Score=62.11 Aligned_cols=230 Identities=11% Similarity=0.014 Sum_probs=132.7
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCce----eeeccccCCCC
Q 008844 81 RILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGST----SILPIAVPDVA 156 (551)
Q Consensus 81 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~~ 156 (551)
+|+.+. ...|+..++........+.....+..+.+.+.. ..++++-...+.|+.+++..... ..+. .
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~--~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~----- 467 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-S----- 467 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECSCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEE-C-----
T ss_pred cccccc-ccceeEeeccCCcceeeecCCCceEEEeecccC--CeeEEeeccceeEEEEeccCCCCCcceeEEE-e-----
Confidence 444443 466888888766655555555667778887743 33555656666777777765311 1110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE-ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG-NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
.....+..|++.+.+..|+.+ ...+.|.+.++........+. ........|+++|.+.+|+.+.
T Consensus 468 --------------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD 532 (791)
T 3m0c_C 468 --------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTD 532 (791)
T ss_dssp --------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEE
T ss_pred --------------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEec
Confidence 001156789999888655555 457899999998665544442 3445688999999866666554
Q ss_pred C-C-CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeecc
Q 008844 236 N-D-RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSAS 313 (551)
Q Consensus 236 ~-D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~ 313 (551)
. . +.|.+.++. +......+...-... +.|++++.+..|+.+...
T Consensus 533 ~g~~~~I~~~~~d-----------------------------G~~~~~lv~~~l~~P-----~GLavD~~~~~LYwaD~~ 578 (791)
T 3m0c_C 533 WGTPAKIKKGGLN-----------------------------GVDIYSLVTENIQWP-----NGITLDLLSGRLYWVDSK 578 (791)
T ss_dssp CSSSCEEEEEETT-----------------------------SCCEEEEECSSCSCE-----EEEEEETTTTEEEEEETT
T ss_pred CCCCCeEEEEecC-----------------------------CCceEEEEeCCCCCc-----eEEEEecCCCeEEEEeCC
Confidence 3 2 567777611 111111111111112 278999888888777652
Q ss_pred CCcceEEEEecCCceeEEE-ecC--CCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcc
Q 008844 314 KGEHKIYIWDRAGYLVKIL-EGP--KEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 314 ~~dg~I~iwd~~~~~~~~l-~~h--~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~ 371 (551)
.+.|..+++.|.....+ ... -.....|++..+ .++++-...+.|...+..+++..
T Consensus 579 --~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 579 --LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp --TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCC
T ss_pred --CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcce
Confidence 57899999984433333 322 223456666433 34444444677777776665443
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.94 E-value=0.0027 Score=59.36 Aligned_cols=158 Identities=11% Similarity=0.040 Sum_probs=94.2
Q ss_pred CceEEEE---eeCCCEEEEEe-------------cCceEEEEECC---CCcEEEeeecc------------CccceEEEE
Q 008844 175 TPTAACF---NKYGDLVYVGN-------------SKGEILVIDHK---SNQIRALVPVS------------GAAVIKNIV 223 (551)
Q Consensus 175 ~i~~~~~---s~~g~~l~~g~-------------~dg~i~i~d~~---~~~~~~~~~~~------------~~~~i~~l~ 223 (551)
.+..+.| .++++++++.. .+..|..||+. +++.+....+. .......++
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence 3467777 57766666543 25779999999 77775544321 113578999
Q ss_pred EeeCCCEEEEeeCC-CeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEc
Q 008844 224 FSRNGQYLLTNSND-RTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFS 301 (551)
Q Consensus 224 ~s~~g~~l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s 301 (551)
..++|+..++++.- +.|..++.. +..+..+ ............+.+++.
T Consensus 144 vD~~GnaYVt~s~~~~~I~rV~pd------------------------------G~~~~~~~~~~~~~~~~~G~nGIv~~ 193 (334)
T 2p9w_A 144 QDRDGNSYVAFALGMPAIARVSAD------------------------------GKTVSTFAWESGNGGQRPGYSGITFD 193 (334)
T ss_dssp ECTTSCEEEEEEESSCEEEEECTT------------------------------SCCEEEEEECCCCSSSCCSCSEEEEE
T ss_pred ECCCCCEEEeCCCCCCeEEEEeCC------------------------------CCEEeeeeecCCCcccccCcceEEEe
Confidence 99999999988888 887777611 1111111 111111122334588999
Q ss_pred CCCCEEEEeeccCCcceEEEEecC-Cce--eEEEe--cCC---CceEE-EEEecCCCe-EEEEcCCCcEEEEecC
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA-GYL--VKILE--GPK---EALID-LAWHPVHPI-IVSVSLTGWVYIWAKD 366 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~-~~~--~~~l~--~h~---~~v~~-l~~sp~~~~-l~s~s~dg~i~iW~~~ 366 (551)
|+|+.|++... .|.|..+|+. -.. +. +. +.. ..... +.--.+++. |++.+..+.+.+.+.+
T Consensus 194 pdg~~Liv~~~---~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 194 PHSNKLIAFGG---PRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp TTTTEEEEESS---SSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSS
T ss_pred CCCCEEEEEcC---CCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCC
Confidence 99999998887 7899999988 221 21 11 211 12233 233346776 5555556655555443
No 290
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.93 E-value=0.038 Score=61.74 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=52.2
Q ss_pred cceEEEEEEcCC------CCEEEEEeC-CCeEEEEeccCCceeeEeecccccccEEEEEec--CCCCEEEEEeCCCCEEE
Q 008844 23 HGVMKCIAFNRR------GTLLAAGCS-DGSCVIWDFETRGIAKELRDKECVAAITSVCWS--KYGHRILVSAADKSLTL 93 (551)
Q Consensus 23 ~~~V~~l~fs~d------g~~latg~~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s--~~g~~l~s~s~dg~i~v 93 (551)
...|.|+++.|. ++++|+|+. |++|+|+++.+.+.+....... .....++.+. ....+|+.|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 467999999863 479999997 9999999998766554433211 1233334332 23457888888998866
Q ss_pred EEc--CCCeEE
Q 008844 94 WDV--LKGEKI 102 (551)
Q Consensus 94 wd~--~~~~~~ 102 (551)
+.+ .+|...
T Consensus 632 ~~~d~~tg~l~ 642 (1158)
T 3ei3_A 632 FGLNIETGLLS 642 (1158)
T ss_dssp EEECTTTCCEE
T ss_pred EEEcCCCCccc
Confidence 654 345443
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.00076 Score=67.07 Aligned_cols=154 Identities=12% Similarity=0.180 Sum_probs=96.2
Q ss_pred CceEEEEee-CCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-CC----eEEEEeCcCC
Q 008844 175 TPTAACFNK-YGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-DR----TIRIYDNLLP 248 (551)
Q Consensus 175 ~i~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-Dg----~i~iwd~~~~ 248 (551)
.+..++++| ++..|+++...+.|..+|+.++...... ........|+|+++|++|+++.. .+ .+.+++ ...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 567899997 4556776666589999999887765554 34566889999999996666554 22 233333 000
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcC-CCCEEEEeeccCCcceEEEEecC-C
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSG-DGEWVIAGSASKGEHKIYIWDRA-G 326 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~-dg~~l~~gs~~~~dg~I~iwd~~-~ 326 (551)
. ......+..+..+ ..++++| +|.++++-.. .+.|+.|+.. +
T Consensus 215 ---~------------------------~~~~~~l~~~~~p------~giavdp~~g~lyv~d~~---~~~V~~~~~~~~ 258 (430)
T 3tc9_A 215 ---G------------------------FKVITELTKGQNC------NGAETHPINGELYFNSWN---AGQVFRYDFTTQ 258 (430)
T ss_dssp ---T------------------------SCSEEEEEECSSC------CCEEECTTTCCEEEEETT---TTEEEEEETTTT
T ss_pred ---c------------------------eeeeeeeccCCCc------eEEEEeCCCCEEEEEECC---CCEEEEEECCCC
Confidence 0 0000111111111 2788999 5665555444 6899999998 4
Q ss_pred ceeEEEec-CCCceEEEEEecCCCeEEEE-cCCCcEEEEecCC
Q 008844 327 YLVKILEG-PKEALIDLAWHPVHPIIVSV-SLTGWVYIWAKDY 367 (551)
Q Consensus 327 ~~~~~l~~-h~~~v~~l~~sp~~~~l~s~-s~dg~i~iW~~~~ 367 (551)
........ .......|+|+|++++|+.+ ...+.|+.++.+.
T Consensus 259 ~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 259 ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 43232222 22457889999999955544 4578899988764
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.89 E-value=0.031 Score=58.19 Aligned_cols=230 Identities=10% Similarity=-0.013 Sum_probs=135.3
Q ss_pred EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe-CCCCEEEEEcCCCeEEEEEEcCCCeeEEE
Q 008844 37 LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA-ADKSLTLWDVLKGEKITRIVLQQTPLQAR 115 (551)
Q Consensus 37 ~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 115 (551)
+|+.+ ....|+..++.+......+... .-..+..|+|.+.+..|+.+. .++.|..+++........+....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~------ 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL------ 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC------
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC------
Confidence 44444 4568999999876543333321 135678999998766665554 46777777765432211111000
Q ss_pred EecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE-ecC
Q 008844 116 LHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG-NSK 194 (551)
Q Consensus 116 ~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g-~~d 194 (551)
..+..+++.+.+..|+.+ ...
T Consensus 80 ----------------------------------------------------------~~P~GlAvD~~~~~LY~tD~~~ 101 (628)
T 4a0p_A 80 ----------------------------------------------------------DYPEGMAVDWLGKNLYWADTGT 101 (628)
T ss_dssp ----------------------------------------------------------SCCCEEEEETTTTEEEEEETTT
T ss_pred ----------------------------------------------------------CCcceEEEEeCCCEEEEEECCC
Confidence 045677787665555444 456
Q ss_pred ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC--CCeEEEEeCcCCccccchhhhhhhccCCCCCcceee
Q 008844 195 GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN--DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKM 272 (551)
Q Consensus 195 g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (551)
+.|.+.++........+. ..-.....|++.|...+|+.+.. .+.|...++
T Consensus 102 ~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~--------------------------- 153 (628)
T 4a0p_A 102 NRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM--------------------------- 153 (628)
T ss_dssp TEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET---------------------------
T ss_pred CEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC---------------------------
Confidence 889999987654433332 33455689999986556655543 455666651
Q ss_pred eeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEecCCCeEE
Q 008844 273 KMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIIV 352 (551)
Q Consensus 273 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~sp~~~~l~ 352 (551)
.+............ .+.++++++++.|+.+... .+.|..+++.|.....+.........|++.. +.+++
T Consensus 154 --dG~~~~~l~~~~~~------P~GlalD~~~~~LY~aD~~--~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~ 222 (628)
T 4a0p_A 154 --DGSERTTLVPNVGR------ANGLTIDYAKRRLYWTDLD--TNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYW 222 (628)
T ss_dssp --TSCSCEEEECSCSS------EEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEE
T ss_pred --CCCceEEEECCCCC------cceEEEccccCEEEEEECC--CCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEE
Confidence 11111111111111 1288999988888877663 6789999998433344544444567888865 44455
Q ss_pred EEcCCCcEEEEecCCCCcc
Q 008844 353 SVSLTGWVYIWAKDYTENW 371 (551)
Q Consensus 353 s~s~dg~i~iW~~~~~~~~ 371 (551)
+-...+.|...+..+++..
T Consensus 223 tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 223 TDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp EETTTTEEEEEETTTCCSC
T ss_pred ecCCCCEEEEEECCCCCce
Confidence 5545788888887666543
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.88 E-value=0.02 Score=54.50 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=92.4
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
.+..+.+.+++..++++ .+|.|+. ....++.-..........+..+++.+++.+++++...+..+-+|-
T Consensus 123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--------- 191 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--------- 191 (327)
T ss_dssp CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT---------
T ss_pred CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC---------
Confidence 45677777777666555 4565432 223344333333345567899999999888877754444444440
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEE
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKIL 332 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l 332 (551)
++.....+ ...... +..+++++++++++++. +|.|++.... |.....+
T Consensus 192 ---------------------gG~tW~~~~~~~~~~-----~~~~~~~~~g~~~~~~~----~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 192 ---------------------GQTAWEPHNRTTSRR-----LHNMGFTPDGRLWMIVN----GGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp ---------------------TCSSCEEEECCSSSC-----EEEEEECTTSCEEEEET----TTEEEEEETTEEEEECCC
T ss_pred ---------------------CCCceeECCCCCCCc-----cceeEECCCCCEEEEeC----CceEEEecCCCCCeeEec
Confidence 00111111 111122 23778899988776554 5778887544 5443333
Q ss_pred ec----CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCCcceeec
Q 008844 333 EG----PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTENWSAFA 375 (551)
Q Consensus 333 ~~----h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~~~~~~s 375 (551)
.. +...+.++++.+++.+++++. +|.| ++..+.++.|..+.
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDV 286 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECG
T ss_pred cCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcC
Confidence 32 223588999998877666655 7777 56777888887654
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.87 E-value=0.038 Score=57.48 Aligned_cols=159 Identities=13% Similarity=-0.015 Sum_probs=98.4
Q ss_pred CceEEEEeeCCCEEEEEe-cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCC-EEEEeeCCCeEEEEeCcCCcccc
Q 008844 175 TPTAACFNKYGDLVYVGN-SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQ-YLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
.+.+++|++.+..|+.+. ..+.|+.+++........+. ..-.....|++...+. +.++-+..+.|.+.++..
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~-~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G----- 423 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT-AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG----- 423 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-----
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE-CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC-----
Confidence 577899998666666554 57889999987654433332 2335667899987554 445555678888887211
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEE
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKI 331 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~ 331 (551)
....... ..+..+ +.+++.|...+|+.+.... .+.|...++.|.....
T Consensus 424 ------------------------~~~~~l~~~~l~~P------~~iavdp~~G~ly~tD~g~-~~~I~r~~~dG~~~~~ 472 (619)
T 3s94_A 424 ------------------------TMRKILISEDLEEP------RAIVLDPMVGYMYWTDWGE-IPKIERAALDGSDRVV 472 (619)
T ss_dssp ------------------------CSCEEEECTTCCSE------EEEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEE
T ss_pred ------------------------CeEEEEEECCCCCe------eeEEEEcCCCcEEEecCCC-CCEEEEEccCCCccEE
Confidence 1000111 111111 2889999766666655421 3678888888544443
Q ss_pred E-ecCCCceEEEEEecCCCeEEEEcC-CCcEEEEecCCCCc
Q 008844 332 L-EGPKEALIDLAWHPVHPIIVSVSL-TGWVYIWAKDYTEN 370 (551)
Q Consensus 332 l-~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iW~~~~~~~ 370 (551)
+ ...-...+.|++.++...|+.+.. .+.|...+++....
T Consensus 473 l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~ 513 (619)
T 3s94_A 473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513 (619)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred EEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce
Confidence 3 333457889999987776666654 67788888876543
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.86 E-value=0.017 Score=53.45 Aligned_cols=270 Identities=12% Similarity=0.054 Sum_probs=165.0
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCc
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPS 124 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 124 (551)
.+|.|.|+..+..+...... -.+. -.+|..+.|+.-. ..++.|+|+++...+..+....++..-.|....
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~-AdsA----IMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~---- 118 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPIS-ADSA----IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---- 118 (365)
T ss_dssp EEEEEEETTSTTSCEEEECC-CSEE----EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS----
T ss_pred CEEEEEECCCCCCccccccc-ccee----eeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC----
Confidence 47899999876544222111 0222 3478777777665 688999999999999999999999888887653
Q ss_pred EEEEeeCCCCcEEEEcCCCceee-eccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-------cCce
Q 008844 125 LCLACPLSSAPMIVDLSTGSTSI-LPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-------SKGE 196 (551)
Q Consensus 125 ~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-------~dg~ 196 (551)
.++--.+..++-|++....... +.-..... ....|.....+++.++++..+ -.|.
T Consensus 119 -~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L----------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 119 -TVALVTDNAVYHWSMEGESQPVKMFDRHSSL----------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp -EEEEEESSEEEEEESSTTCCCEEEEECCGGG----------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred -eEEEEcCCcEEEEcccCCCCCceeeecchhc----------------ccceEEEEEECCCCCEEEEEeEeccCCcccee
Confidence 4555556789999987633221 11111111 012777788888888877644 2478
Q ss_pred EEEEECCCCcEEEeeeccCccceEEEEEeeC---CCEEEEeeC---CCeEEEEeCcCCccccchhhhhhhccCCCCCcce
Q 008844 197 ILVIDHKSNQIRALVPVSGAAVIKNIVFSRN---GQYLLTNSN---DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIE 270 (551)
Q Consensus 197 i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~---g~~l~t~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (551)
+.+|..+.+.....- +|......+.+..+ ...++.+.. .+.++|.++-.+..+..
T Consensus 182 mQLYS~er~~sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~----------------- 242 (365)
T 2xzh_A 182 MQLYSVDRKVSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ----------------- 242 (365)
T ss_dssp EEEEETTTTEEEEEC--CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCC-----------------
T ss_pred EEEEeecccccceee--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCC-----------------
Confidence 899998766543332 55433322222111 112332222 25788888422210100
Q ss_pred eeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCC
Q 008844 271 KMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHP 349 (551)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~ 349 (551)
....+.+..+.. .......++ ++..|+.-..++.-+. -|.|++||+. |.++..-+-..++|..-+-+....
T Consensus 243 ---~f~kk~vdi~fp-pea~~DFPV-amqvs~kygviyviTK---~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~ 314 (365)
T 2xzh_A 243 ---PFPKKAVDVFFP-PEAQNDFPV-AMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA 314 (365)
T ss_dssp ---CCCCEEEEECCC-TTCTTCCEE-EEEEETTTTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGT
T ss_pred ---CcccccceeeCC-ccccCCceE-EEEecccCCEEEEEeC---CcEEEEEEcccCcEEEEeccCCCceEEecccCCCC
Confidence 000111222211 112233333 7888888888888888 8999999999 999988887777887666666655
Q ss_pred eEEEEcCCCcEEEEecCCC
Q 008844 350 IIVSVSLTGWVYIWAKDYT 368 (551)
Q Consensus 350 ~l~s~s~dg~i~iW~~~~~ 368 (551)
-++.....|.|.--.++..
T Consensus 315 Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 315 GIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTCEEEEEEECTT
T ss_pred cEEEEcCCCEEEEEEECcc
Confidence 6666667888776666543
No 296
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.85 E-value=0.0065 Score=58.08 Aligned_cols=156 Identities=12% Similarity=0.104 Sum_probs=88.3
Q ss_pred EEEEEecCCCCEEEEEe------------CCCCEEEEEcCC--CeEE-EEEEcC------CCeeEEEEecCCCCCc-EEE
Q 008844 70 ITSVCWSKYGHRILVSA------------ADKSLTLWDVLK--GEKI-TRIVLQ------QTPLQARLHPGSSTPS-LCL 127 (551)
Q Consensus 70 V~~l~~s~~g~~l~s~s------------~dg~i~vwd~~~--~~~~-~~~~~~------~~~~~~~~~p~~~~~~-~~~ 127 (551)
.-.|...|+|..+++++ .+|.|.++|..+ ++.. ..+... -.+..+.+.++..... +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34555677765444431 688999999873 3322 122221 2467788777522222 333
Q ss_pred EeeC--CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-------------
Q 008844 128 ACPL--SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN------------- 192 (551)
Q Consensus 128 ~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~------------- 192 (551)
+... ...+.+|++.........+..... ..-..++.+.+.++|.+.++..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g---------------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~ 196 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRH---------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM 196 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECC---------------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEecccc---------------CCCCCCceEEEeCCCCEEecCCcEeCCcccccchh
Confidence 4333 456667776554322111111100 0111678999999998766654
Q ss_pred ----cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee-CCCeEEEEe
Q 008844 193 ----SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS-NDRTIRIYD 244 (551)
Q Consensus 193 ----~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s-~Dg~i~iwd 244 (551)
..|.|+.+|.. +..... ..-..-+.|+|+|+++.|+++. ..+.|+.|+
T Consensus 197 ~~~~~~g~vyr~d~~--~~~~~~--~~l~~pNGia~spDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 197 HLGLAWSFVTYYSPN--DVRVVA--EGFDFANGINISPDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp HTTCCCEEEEEECTT--CCEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred hccCCccEEEEEECC--eEEEee--cCCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence 13567777663 332222 3345578899999998877664 578899998
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.78 E-value=0.0025 Score=63.35 Aligned_cols=228 Identities=9% Similarity=0.133 Sum_probs=123.2
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeCC---Ce-EEEEeccCCcee-eEeecccccccEEEEEecC
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCSD---GS-CVIWDFETRGIA-KELRDKECVAAITSVCWSK 77 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~d---g~-I~iwd~~~~~~~-~~~~~~~h~~~V~~l~~s~ 77 (551)
|+.+|+.++.....+. ......+|+|+++|+++++.... .. +...+...+... ..+.. -.....+++.|
T Consensus 164 I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~---~~~P~giavd~ 237 (433)
T 4hw6_A 164 FRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCN---ARGAKTCAVHP 237 (433)
T ss_dssp EEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEE---CSSBCCCEECT
T ss_pred EEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccc---cCCCCEEEEeC
Confidence 3455555554332222 23457899999999955444311 12 333333222110 12211 23456788999
Q ss_pred -CCCEEEEEeCCCCEEEEEcCCCeEEEEE-EcC--CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCC--Ccee--eec
Q 008844 78 -YGHRILVSAADKSLTLWDVLKGEKITRI-VLQ--QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLST--GSTS--ILP 149 (551)
Q Consensus 78 -~g~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~--~~~~--~~~ 149 (551)
+|.++++-..++.|..++..++.....+ ... .....++++|++. .++++-...+.|..+++.. +... ...
T Consensus 238 ~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~--~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ 315 (433)
T 4hw6_A 238 QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD--WAYIIYNGKHCIYRVDYNRETGKLAVPYIV 315 (433)
T ss_dssp TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS--EEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC--EEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence 6665555556788999998877763332 222 2234688888763 3666666778888887653 2211 000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCceEEEE---------eeCCCEEEEEecCceEEEEECCCCcEEEeeeccC-----
Q 008844 150 IAVPDVANGIAPSSRNKYSDGTPPFTPTAACF---------NKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG----- 215 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~----- 215 (551)
..... ..+...... ....-..+..+++ .++|.++++-..++.|+.++. ++......-...
T Consensus 316 ag~~g-~~g~~dg~~----~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G 389 (433)
T 4hw6_A 316 CGQHS-SPGWVDGMG----TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWG 389 (433)
T ss_dssp EECTT-CCCCBCEEG----GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSC
T ss_pred EecCC-CCccCCCcc----cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccc
Confidence 00000 000000000 0000115678899 677776666667789999985 554433321100
Q ss_pred -----------ccceEEEEEe-eCCCEEEEeeCCCeEEEEe
Q 008844 216 -----------AAVIKNIVFS-RNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 216 -----------~~~i~~l~~s-~~g~~l~t~s~Dg~i~iwd 244 (551)
-.....|+++ ++|.++++-...+.|+.++
T Consensus 390 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 390 YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 1236789999 6676666666678888876
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.0097 Score=56.17 Aligned_cols=186 Identities=11% Similarity=0.150 Sum_probs=115.3
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCC----CC---EEEEEeC---CCCEEEEEc--CCCeEE
Q 008844 35 GTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKY----GH---RILVSAA---DKSLTLWDV--LKGEKI 102 (551)
Q Consensus 35 g~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~----g~---~l~s~s~---dg~i~vwd~--~~~~~~ 102 (551)
..+++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ |+ ++++... +++|.+|++ .++. +
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 345555566788999999 7888888753 34555555442 22 2333333 578999977 3443 4
Q ss_pred EEEEc-------C-CCeeEEEE--ecCCCCCcEEEEeeCCCCcEEEEcC---CCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 103 TRIVL-------Q-QTPLQARL--HPGSSTPSLCLACPLSSAPMIVDLS---TGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 103 ~~~~~-------~-~~~~~~~~--~p~~~~~~~~~~~~~~~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
..+.. . ..++.+++ .|.. ...++++...++.+..|.+. .+......+.....
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~-g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-------------- 178 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKT-GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-------------- 178 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTT-CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--------------
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCC-CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--------------
Confidence 44411 1 45666777 4432 23467777788888888873 33222211111110
Q ss_pred CCCCCCceEEEEeeCCCEEEEEecCceEEEEECC-----CCcEEEeeeccC-ccceEEEEEe--eCCC-EEEEee-CCCe
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHK-----SNQIRALVPVSG-AAVIKNIVFS--RNGQ-YLLTNS-NDRT 239 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~-----~~~~~~~~~~~~-~~~i~~l~~s--~~g~-~l~t~s-~Dg~ 239 (551)
...+-.+...+....|+++-.+..|..|+.. +++.+..+...+ ...+..|++. ++++ +|++++ .+++
T Consensus 179 ---gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 179 ---NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ---SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred ---CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 1167788889888999999998778888865 345555543232 2468888885 4555 666666 5789
Q ss_pred EEEEe
Q 008844 240 IRIYD 244 (551)
Q Consensus 240 i~iwd 244 (551)
..+||
T Consensus 256 ~~Vyd 260 (355)
T 3amr_A 256 YAIYD 260 (355)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99999
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.74 E-value=0.00012 Score=77.71 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=82.9
Q ss_pred ceEEEEEEcCCCCEEEEEe-CCCeEEEEeccC----CceeeEeecccccccEEEEEecCCC-CEEEEEeCCCCEEEEEcC
Q 008844 24 GVMKCIAFNRRGTLLAAGC-SDGSCVIWDFET----RGIAKELRDKECVAAITSVCWSKYG-HRILVSAADKSLTLWDVL 97 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~-~dg~I~iwd~~~----~~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~vwd~~ 97 (551)
..+..|+|++.+..|+.+. ..+.|+.+++.+ ......+... ......|++.+.+ +++++-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~--~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC--C--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC--CCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence 3456889998776666553 457899998875 2222222111 2234567777544 444443446778888765
Q ss_pred CCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCce
Q 008844 98 KGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPT 177 (551)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (551)
.... ..+.... ...+.
T Consensus 484 g~~~-~~l~~~~---------------------------------------------------------------~~~P~ 499 (699)
T 1n7d_A 484 GVKR-KTLFREQ---------------------------------------------------------------GSKPR 499 (699)
T ss_dssp SCCE-EEECCCS---------------------------------------------------------------SCCCC
T ss_pred CCce-EEEEeCC---------------------------------------------------------------CCCcc
Confidence 4322 1111000 00344
Q ss_pred EEEEeeCCCEEEEEec--CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEE-EeeCCCeEEEEe
Q 008844 178 AACFNKYGDLVYVGNS--KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLL-TNSNDRTIRIYD 244 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-t~s~Dg~i~iwd 244 (551)
.++++|.+.+|+.+.. .+.|.++++........+. ..-.....|+|+|++..|+ +-+..+.|..++
T Consensus 500 giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d 568 (699)
T 1n7d_A 500 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSID 568 (699)
T ss_dssp CEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred eEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEc
Confidence 5667765544444432 2677777765433222211 2233456799998765554 445577899888
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.70 E-value=0.00024 Score=75.37 Aligned_cols=221 Identities=11% Similarity=-0.005 Sum_probs=121.6
Q ss_pred CCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC----ceeeeccccCCCCCCCCCCC
Q 008844 88 DKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG----STSILPIAVPDVANGIAPSS 163 (551)
Q Consensus 88 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~ 163 (551)
.+.|++.++........+.....+..+.|.+.. ..++++-...+.|+.+++... ....+ +
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~--~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~-i------------- 448 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTV-I------------- 448 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTT--TEEEECCTTTTSBEEEESCCCCC-CCCCCB-C-------------
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccccc--CeEEEEecCCCeEEEEecCCCCCCcceEEE-E-------------
Confidence 467888888776655444444556677777643 234455555677888877652 11000 0
Q ss_pred CCCCCCCCCCCCceEEEEeeCCCEEEEE-ecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-C-CeE
Q 008844 164 RNKYSDGTPPFTPTAACFNKYGDLVYVG-NSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-D-RTI 240 (551)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-D-g~i 240 (551)
......+..+++.+.+..|+++ ...+.|.++++........+. ........|+++|.+.+|+.+.. . +.|
T Consensus 449 ------~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I 521 (699)
T 1n7d_A 449 ------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKI 521 (699)
T ss_dssp ------CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCE
T ss_pred ------eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeE
Confidence 0000145567887655444444 457889999988665544432 22344577899987665555443 2 566
Q ss_pred EEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeee-cccccccceeeeeeeEEcCCCCEEEEeeccCCcceE
Q 008844 241 RIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKI 319 (551)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I 319 (551)
.++++. +. ....+ ...-... +.|+|+|++..|+.+... .+.|
T Consensus 522 ~~~~~d-----------------------------G~-~~~~l~~~~l~~P-----nGlavd~~~~~LY~aD~~--~~~I 564 (699)
T 1n7d_A 522 KKGGLN-----------------------------GV-DIYSLVTENIQWP-----NGITLDLLSGRLYWVDSK--LHSI 564 (699)
T ss_dssp EBCCSS-----------------------------SC-CCCEESCSSCSSC-----CCEEECTTTCCEEEEETT--TTEE
T ss_pred EEEeCC-----------------------------CC-CeeEEEeCCCCCc-----cEEEEeccCCEEEEEecC--CCeE
Confidence 666511 00 01111 0000111 278999987777766652 6789
Q ss_pred EEEecCCceeEEEec---CCCceEEEEEecCCCeEEEEcCCCcEEEEecCCCC
Q 008844 320 YIWDRAGYLVKILEG---PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 320 ~iwd~~~~~~~~l~~---h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~~~ 369 (551)
+++++.|.....+.. .......|++..+ .++++....+.|..++..+++
T Consensus 565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 999998443333322 1223455666543 344444456788888765543
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.68 E-value=0.045 Score=52.85 Aligned_cols=272 Identities=12% Similarity=0.054 Sum_probs=170.5
Q ss_pred CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCC
Q 008844 44 DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTP 123 (551)
Q Consensus 44 dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 123 (551)
..+|.|.|+..+..+...... --+.-.+|..+.|+.-. ..++.|+|+++...+..+....++....|....
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT---
T ss_pred CCeEEEEECCCCCcceecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC---
Confidence 347999999876544222111 11233577777776665 789999999999999999999999888887653
Q ss_pred cEEEEeeCCCCcEEEEcCCCcee-eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-------cCc
Q 008844 124 SLCLACPLSSAPMIVDLSTGSTS-ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-------SKG 195 (551)
Q Consensus 124 ~~~~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-------~dg 195 (551)
.++--.+..++-|++...... .+.-..... ....|.....+++.++++..+ -.|
T Consensus 118 --~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L----------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 118 --TVALVTDNAVYHWSMEGESQPVKMFDRHSSL----------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp --EEEEECSSEEEEEESSSSCCCEEEEECCGGG----------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEE
T ss_pred --eEEEEcCCeeEEecccCCCCchhheecchhc----------------ccceEEEEEECCCCCeEEEEeecccCCcccc
Confidence 455667788999999753322 111111111 012777888888999887543 257
Q ss_pred eEEEEECCCCcEEEeeeccCccceEEEEEeeCC---CEEEEeeC---CCeEEEEeCcCCccccchhhhhhhccCCCCCcc
Q 008844 196 EILVIDHKSNQIRALVPVSGAAVIKNIVFSRNG---QYLLTNSN---DRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGI 269 (551)
Q Consensus 196 ~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g---~~l~t~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (551)
.+.+|....+.....- +|......+.+..+. ..++.+.. .+.++|.++-.+..+.. .
T Consensus 180 ~mQLYS~er~~sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~-~-------------- 242 (494)
T 1bpo_A 180 AMQLYSVDRKVSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ-P-------------- 242 (494)
T ss_dssp EEEEEESTTCCEEEEC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC-C--------------
T ss_pred eEEEeeccccccchhe--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC-C--------------
Confidence 8899998876543332 554444333332111 13333332 37889988432211100 0
Q ss_pred eeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCC
Q 008844 270 EKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVH 348 (551)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~ 348 (551)
...+.+..+.. .......++ ++..|+.-..++.-+. -|.|++||+. |.++..-+-..++|..-+-+...
T Consensus 243 -----f~kk~vdv~fp-pe~~~DFPv-amqvs~kygviyviTK---~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~ 312 (494)
T 1bpo_A 243 -----FPKKAVDVFFP-PEAQNDFPV-AMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT 312 (494)
T ss_dssp -----CCCEEEECCCC-TTSTTCCEE-EEEEETTTTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT
T ss_pred -----ccceeeeeeCC-cccccCcee-EEEecccCCEEEEEec---CceEEEEecccceeeeeecccCCceEEecccCCC
Confidence 00111111111 122233333 7888998888888888 8999999999 99998888777888777777666
Q ss_pred CeEEEEcCCCcEEEEecCCCC
Q 008844 349 PIIVSVSLTGWVYIWAKDYTE 369 (551)
Q Consensus 349 ~~l~s~s~dg~i~iW~~~~~~ 369 (551)
.-++.....|.|.--.++...
T Consensus 313 ~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 313 AGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEccCceEEEEEEcccc
Confidence 667777788888877776543
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.68 E-value=0.025 Score=54.41 Aligned_cols=247 Identities=15% Similarity=0.037 Sum_probs=120.6
Q ss_pred ccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe-EEEEEE----cCCCeeEEEEecCCCC-CcEEEEeeC---C----CC
Q 008844 68 AAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-KITRIV----LQQTPLQARLHPGSST-PSLCLACPL---S----SA 134 (551)
Q Consensus 68 ~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~----~~~~~~~~~~~p~~~~-~~~~~~~~~---~----~~ 134 (551)
.....|+|.|+|+ |+++..++.|.+++ .++. .+..+. ....+..++++|+-.. ..++++... + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4568899999997 45555679999997 4565 222111 1235788999986221 223333332 2 55
Q ss_pred cEEEEcCCCc--e---eeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-------------Cce
Q 008844 135 PMIVDLSTGS--T---SILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-------------KGE 196 (551)
Q Consensus 135 i~i~d~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-------------dg~ 196 (551)
|..++..... . ..+...... ........++|.|+|.++++.+. .|.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~----------------~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPG----------------AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEEC----------------CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred EEEEEECCCCcCcCccEEEEEcCCC----------------CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence 6677765541 1 111000000 00013467999999986665332 256
Q ss_pred EEEEECCCCc-------EEEeeeccCccceEEEEEee-CCCEEEEeeCCC---eEEEEeCcCCccccchhhhhhhccCCC
Q 008844 197 ILVIDHKSNQ-------IRALVPVSGAAVIKNIVFSR-NGQYLLTNSNDR---TIRIYDNLLPLKNGLEALVDIEKGIAE 265 (551)
Q Consensus 197 i~i~d~~~~~-------~~~~~~~~~~~~i~~l~~s~-~g~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (551)
|.-++....- ....+...+ .....|+|+| +|+++++-...+ .|.+.. +...-. ........ .
T Consensus 171 I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~---~G~nyG--wp~~~g~~-~ 243 (354)
T 3a9g_A 171 ILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL---KGGNYG--WPLATGKA-G 243 (354)
T ss_dssp EEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC---TTCBCC--TTTCCSCC-C
T ss_pred EEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec---CCCcCC--CCcccCCC-C
Confidence 7777664320 011111133 2345799999 566555433222 133222 100000 00000000 0
Q ss_pred CCcceeeeeccceeeeee-cccccccceeeeeeeEEc-------CCCCEEEEeeccCCcceEEEEecC--Ccee--EEE-
Q 008844 266 PNGIEKMKMVGSKCLALF-REFQDSITKMHWKAPCFS-------GDGEWVIAGSASKGEHKIYIWDRA--GYLV--KIL- 332 (551)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~s-------~dg~~l~~gs~~~~dg~I~iwd~~--~~~~--~~l- 332 (551)
... -...+..+ ..+. ....++|. .+|.++++... .+.|...++. +... ..+
T Consensus 244 ~~~-------~~~p~~~~~~~~~------ap~G~~~y~g~~fp~~~G~l~v~~~~---~~~v~~~~~~~~g~~~~~~~~~ 307 (354)
T 3a9g_A 244 RGE-------FVDPVIDTGSETW------APSGASFVHGDMFPGLRGWLLIACLR---GSMLAAVNFGDNMEVRKISTFF 307 (354)
T ss_dssp CTT-------SCCCSEECTTCCC------CEEEEEECCSSSCGGGTTEEEEEETT---TTEEEEEEECGGGCEEEEEEEC
T ss_pred CCC-------CcCCEeecCCCCc------CCcceEEECCCCCcccCCcEEEEEcC---CCEEEEEEECCCCcccceeeec
Confidence 000 00011111 1111 12256663 46766666555 6788888887 3332 222
Q ss_pred ecCCCceEEEEEecCCCeEEEEc
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVS 355 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s 355 (551)
.+....+..|++.|+|.++++..
T Consensus 308 ~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 308 KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCeeEEEECCCCcEEEEEe
Confidence 22245789999999998666654
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.68 E-value=0.043 Score=52.67 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=46.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce--eeEee-cccccccEEEEEecCC---CCEEEEEeC-C-----CCE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI--AKELR-DKECVAAITSVCWSKY---GHRILVSAA-D-----KSL 91 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~--~~~~~-~~~h~~~V~~l~~s~~---g~~l~s~s~-d-----g~i 91 (551)
.....|+|.|+|+++++ ...|.|++++ ++.. +..+. ..........|+|+|+ +..|+.+.. . ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34679999999996665 5669999998 3432 11111 0011356889999998 555555443 2 568
Q ss_pred EEEEcCCC
Q 008844 92 TLWDVLKG 99 (551)
Q Consensus 92 ~vwd~~~~ 99 (551)
..|++..+
T Consensus 108 ~r~~~~~~ 115 (352)
T 2ism_A 108 VRLRHLGE 115 (352)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 88887644
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.66 E-value=0.037 Score=53.19 Aligned_cols=149 Identities=12% Similarity=0.149 Sum_probs=79.1
Q ss_pred ccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEc------CCCeeEEEEecCCCC-CcEEEEeeCC-----CCc
Q 008844 68 AAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVL------QQTPLQARLHPGSST-PSLCLACPLS-----SAP 135 (551)
Q Consensus 68 ~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~~p~~~~-~~~~~~~~~~-----~~i 135 (551)
.....|+|.|+|++++ +...+.|.+++ ++........ ...+..++++|+-.. ..++++.... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4567999999998554 45679999998 5543222111 245788999997211 2244443332 567
Q ss_pred EEEEcCCCcee---eeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEec-------------CceEEE
Q 008844 136 MIVDLSTGSTS---ILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNS-------------KGEILV 199 (551)
Q Consensus 136 ~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~-------------dg~i~i 199 (551)
..++...+... .+....... .........++|.|+|.+.++.+. .|.|.-
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~--------------~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~r 173 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPAR--------------PHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILR 173 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCC--------------TTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEE
T ss_pred EEEEeCCCCcCceEEEEEeCCCC--------------CCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEE
Confidence 77777644211 110001000 000113468999999975555322 256777
Q ss_pred EECCCC------------cEEEeeeccCccceEEEEEee-CCCEEEEe
Q 008844 200 IDHKSN------------QIRALVPVSGAAVIKNIVFSR-NGQYLLTN 234 (551)
Q Consensus 200 ~d~~~~------------~~~~~~~~~~~~~i~~l~~s~-~g~~l~t~ 234 (551)
++.... .....+...+ .....++|+| +|.++++-
T Consensus 174 i~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 174 LTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp ECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred EcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence 776531 0111111122 2356788999 56655544
No 305
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=0.027 Score=56.29 Aligned_cols=231 Identities=10% Similarity=0.077 Sum_probs=123.9
Q ss_pred ccccccCCCCccceeeccc-ccceEEEEEE-------cCCCCEEEEEeCCC-------eEEEEeccC-Ccee-----eEe
Q 008844 3 APIIDPLQGDFPEVIEEYL-EHGVMKCIAF-------NRRGTLLAAGCSDG-------SCVIWDFET-RGIA-----KEL 61 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~-h~~~V~~l~f-------s~dg~~latg~~dg-------~I~iwd~~~-~~~~-----~~~ 61 (551)
|+++|+..+.....+.... .......|+| +++|++|+++...+ .|.+++... +... ..+
T Consensus 164 i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v 243 (496)
T 3kya_A 164 IQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI 243 (496)
T ss_dssp EEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE
T ss_pred EEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee
Confidence 3445555554433322211 1235889999 99999777665543 266665443 2322 223
Q ss_pred ecccccccEEEEEecCCCCEE-EEEeCCCCEEEEEcC-------CCeE-----------EEE-EEc--CCCeeEEEEecC
Q 008844 62 RDKECVAAITSVCWSKYGHRI-LVSAADKSLTLWDVL-------KGEK-----------ITR-IVL--QQTPLQARLHPG 119 (551)
Q Consensus 62 ~~~~h~~~V~~l~~s~~g~~l-~s~s~dg~i~vwd~~-------~~~~-----------~~~-~~~--~~~~~~~~~~p~ 119 (551)
... .....++++|++.+| ++-..++.|..+|+. ++.. ... +.. ...+..++++|+
T Consensus 244 ~~~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~ 320 (496)
T 3kya_A 244 AAY---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPT 320 (496)
T ss_dssp EEE---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTT
T ss_pred ccC---CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCC
Confidence 221 234577889954444 455567889999987 5543 112 222 234678999998
Q ss_pred CCCCcEEEEeeCCCCcEEEEcCCCcee----eeccccCCCCCCCCCCCCCCCCCCCCCCCce-EEEEe-------eCCCE
Q 008844 120 SSTPSLCLACPLSSAPMIVDLSTGSTS----ILPIAVPDVANGIAPSSRNKYSDGTPPFTPT-AACFN-------KYGDL 187 (551)
Q Consensus 120 ~~~~~~~~~~~~~~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s-------~~g~~ 187 (551)
+. .++++-...+.|+.++....... ......... .+....... ...-..+. .++.. +.|.+
T Consensus 321 G~--~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~-~G~~DG~~~----~a~f~~P~~gv~vd~~~~~~~~~g~l 393 (496)
T 3kya_A 321 GK--YAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ-SGYRDDVGT----EARMNNPCQGVFVKNPDYTGEEEYDF 393 (496)
T ss_dssp SS--EEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB-CCCBCCBGG----GCBCSSEEEEEEEECTTCCSSCCEEE
T ss_pred CC--EEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC-CcccCCccc----ccccCCCeEEEEEccccccccCCCeE
Confidence 63 35666667778888665432211 111111000 000000000 00001344 45554 45666
Q ss_pred EEEEecCceEEEEECCCCcEEEeeec------------c----------CccceEEEEEeeC-CCEEEEeeCCCeEEEEe
Q 008844 188 VYVGNSKGEILVIDHKSNQIRALVPV------------S----------GAAVIKNIVFSRN-GQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 188 l~~g~~dg~i~i~d~~~~~~~~~~~~------------~----------~~~~i~~l~~s~~-g~~l~t~s~Dg~i~iwd 244 (551)
+++=..+..|+.++ .++......-. + .-.....|+++++ |.++++-+....||.++
T Consensus 394 yVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 394 YFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp EEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 66656788999998 45544332210 0 0123678999986 76666666788899998
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.43 E-value=0.016 Score=54.17 Aligned_cols=70 Identities=4% Similarity=-0.043 Sum_probs=36.1
Q ss_pred CCCEEEEeeccCC--cceEEEEecCCceeEEEec-CCCceEEEEEecCCCeEEEEcCC-----CcEEEEecCCCCccee
Q 008844 303 DGEWVIAGSASKG--EHKIYIWDRAGYLVKILEG-PKEALIDLAWHPVHPIIVSVSLT-----GWVYIWAKDYTENWSA 373 (551)
Q Consensus 303 dg~~l~~gs~~~~--dg~I~iwd~~~~~~~~l~~-h~~~v~~l~~sp~~~~l~s~s~d-----g~i~iW~~~~~~~~~~ 373 (551)
++++++.|+.... ...|.+||+.......+.. +.......+..-++.+++.++.+ ..|.+||+.+. .|..
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W~~ 283 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID-SWEV 283 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT-EEEE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC-eEEE
Confidence 5667777765221 2468999998222233321 11111111222266777777765 34677777653 4554
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.37 E-value=0.19 Score=52.35 Aligned_cols=193 Identities=6% Similarity=-0.037 Sum_probs=117.2
Q ss_pred ceEEEEEEcCCCCEEEEE-eCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEE-eCCCCEEEEEcCCCeE
Q 008844 24 GVMKCIAFNRRGTLLAAG-CSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVS-AADKSLTLWDVLKGEK 101 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg-~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~ 101 (551)
..+..|+|++.+..|+.+ ..++.|..+++........+... ......|++.+.+..|+.+ ...+.|.+.++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g--~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~ 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG--LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC--CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence 457899999876655544 45788999998755443333321 2456778887655555444 4477899999865432
Q ss_pred EEEE-EcCCCeeEEEEecCCCCCcEEEEe-eCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 008844 102 ITRI-VLQQTPLQARLHPGSSTPSLCLAC-PLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAA 179 (551)
Q Consensus 102 ~~~~-~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (551)
...+ ..-..+..+++.|... .++++- +..+.|...++.......+... -..+..+
T Consensus 115 ~~l~~~~l~~P~~iavdp~~G--~lY~tD~g~~~~I~r~~~dG~~~~~l~~~---------------------~~~P~Gl 171 (628)
T 4a0p_A 115 QVLVWKDLDSPRALALDPAEG--FMYWTEWGGKPKIDRAAMDGSERTTLVPN---------------------VGRANGL 171 (628)
T ss_dssp EEEECSSCCCEEEEEEETTTT--EEEEEECSSSCEEEEEETTSCSCEEEECS---------------------CSSEEEE
T ss_pred EEEEeCCCCCcccEEEccCCC--eEEEeCCCCCCEEEEEeCCCCceEEEECC---------------------CCCcceE
Confidence 2222 2234577888887432 233333 1245566666655543332110 1167899
Q ss_pred EEeeCCCEEEEEe-cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 180 CFNKYGDLVYVGN-SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 180 ~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
++++++..|+.+. ..+.|..+|+...... .+. ........|++.. +..+++-...+.|...|
T Consensus 172 alD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 172 TIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEccccCEEEEEECCCCEEEEEcCCCCceE-Eee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 9999877777765 4678999999765442 222 2333456777764 44555555578888888
No 308
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.37 E-value=0.11 Score=49.47 Aligned_cols=55 Identities=13% Similarity=0.026 Sum_probs=38.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeE--ee--cccccccEEEEEecCC
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKE--LR--DKECVAAITSVCWSKY 78 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~--~~--~~~h~~~V~~l~~s~~ 78 (551)
.....|+|.|+|+++++-...|.|++++..++..... +. ..........|+|+|+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 4568999999999888765589999998765543211 11 0112467899999995
No 309
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.022 Score=53.90 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=73.9
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEEEcC--CCeeEEEEecCCCCCcEEEEe-eCCCCcEEEEcCCCceeeeccccCCCC
Q 008844 80 HRILVSAADKSLTLWDVLKGEKITRIVLQ--QTPLQARLHPGSSTPSLCLAC-PLSSAPMIVDLSTGSTSILPIAVPDVA 156 (551)
Q Consensus 80 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~ 156 (551)
.+++.++.||.|.-+|..+|+.+..+... .++....-.........++.. ..+|.++.++..+|... ++.......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccce
Confidence 47888999999999999999999999775 233321111110111233343 58999999998887443 222221110
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEe-----------eCCCEEEEEecCceEEEEECCCCcEEEeeec
Q 008844 157 NGIAPSSRNKYSDGTPPFTPTAACFN-----------KYGDLVYVGNSKGEILVIDHKSNQIRALVPV 213 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~~~s-----------~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 213 (551)
....+... ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus 90 ------------------~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 ------------------STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp ------------------TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ------------------eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 00001110 1356789999999999999999999998853
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.25 E-value=0.39 Score=53.67 Aligned_cols=141 Identities=15% Similarity=0.231 Sum_probs=85.1
Q ss_pred CCEEEEEe----------cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccch
Q 008844 185 GDLVYVGN----------SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLE 254 (551)
Q Consensus 185 g~~l~~g~----------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~ 254 (551)
..+|++|+ ..|.|++|++..++..........+++++++-- +| +|+++ ....|++|++..
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~------- 913 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTT------- 913 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECT-------
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCC-------
Confidence 37888887 368999999976555443333457888887744 45 44444 357899999211
Q ss_pred hhhhhhccCCCCCcceeeeeccceeeee-ecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--CceeEE
Q 008844 255 ALVDIEKGIAEPNGIEKMKMVGSKCLAL-FREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLVKI 331 (551)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~~~ 331 (551)
.+.+.. ...+.. +. .+.....|.+|++|.. -..|.++..+ ...+..
T Consensus 914 ----------------------~~~L~~~~~~~~~-i~-----~~~l~~~~~~I~vgD~---~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 914 ----------------------EKELRTECNHYNN-IM-----ALYLKTKGDFILVGDL---MRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp ----------------------TSCEEEEEEECCC-SC-----EEEEEEETTEEEEEES---SBCEEEEEEETTTTEEEE
T ss_pred ----------------------CceEEEEeecccc-EE-----EEEEeccCCEEEEEEh---hheEEEEEEEcCCCeEEE
Confidence 011110 000111 11 2233335789999988 5556665544 333333
Q ss_pred Eec--CCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 332 LEG--PKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 332 l~~--h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+.. +...++++.|--++ .++.+..+|.|.+.....
T Consensus 963 ~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 332 34578888887654 666688899999988765
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.24 E-value=0.11 Score=49.55 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=40.7
Q ss_pred eeeEEcCCCCEEEEeeccCCcceEEEEecC--Ccee--EEEecCCCceEEEEEec-CCCeEEEEcCC
Q 008844 296 KAPCFSGDGEWVIAGSASKGEHKIYIWDRA--GYLV--KILEGPKEALIDLAWHP-VHPIIVSVSLT 357 (551)
Q Consensus 296 ~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--~~~~--~~l~~h~~~v~~l~~sp-~~~~l~s~s~d 357 (551)
+.++||||+++|+.+... .+.|+.|++. |.+. +.+. .....-.+++.+ +|.+.+++..+
T Consensus 224 NGia~spDg~~lYvadt~--~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 224 NGINISPDGKYVYIAELL--AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEECTTSSEEEEEEGG--GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred CcceECCCCCEEEEEeCC--CCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence 389999999988877653 5889999987 4332 2332 234567788888 48777766544
No 312
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.20 E-value=0.28 Score=50.91 Aligned_cols=302 Identities=10% Similarity=-0.030 Sum_probs=152.9
Q ss_pred ceEEEEEEcCCCCEEEEEeC--CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe-CCCCEEEEEcCCCe
Q 008844 24 GVMKCIAFNRRGTLLAAGCS--DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA-ADKSLTLWDVLKGE 100 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~--dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~ 100 (551)
.....|++.|.+.+|+.... .+.|...++.. .....+... .-...+.|++.+++..|+.+. ..+.|...++....
T Consensus 127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~-~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~ 204 (619)
T 3s94_A 127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 204 (619)
T ss_dssp SCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECS-SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred CCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeC-CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence 34568889887555555443 35676667663 333333221 145678999998766666664 46788888886443
Q ss_pred EEEEEE-cCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCC-------CCCCCCCCCC---
Q 008844 101 KITRIV-LQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGI-------APSSRNKYSD--- 169 (551)
Q Consensus 101 ~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--- 169 (551)
...... ....+..+.+..+ .++++-...+.|...|..++...............+ .+.....+..
T Consensus 205 ~~~~~~~~~~~P~gi~~~~~----~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng 280 (619)
T 3s94_A 205 RQAVVKGSLPHPFALTLFED----ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 280 (619)
T ss_dssp EC---------CCCEEESSS----EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGG
T ss_pred cEEEEeCCCCCceEEEEeCC----EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCC
Confidence 322222 1122445555433 356666677888888887765322111100000000 0000000000
Q ss_pred --------CCCCCCceEEEE-----eeCC--------CEEEEEecCceEEEEECCCCcEE-EeeeccCccceEEEEEeeC
Q 008844 170 --------GTPPFTPTAACF-----NKYG--------DLVYVGNSKGEILVIDHKSNQIR-ALVPVSGAAVIKNIVFSRN 227 (551)
Q Consensus 170 --------~~~~~~i~~~~~-----s~~g--------~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~l~~s~~ 227 (551)
........|.|. .+++ .+|+.+ ..+.|+..++...... ..++...-..+..|+|++.
T Consensus 281 ~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~ 359 (619)
T 3s94_A 281 GCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPV 359 (619)
T ss_dssp GCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETT
T ss_pred cccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcC
Confidence 000001122221 1111 133333 3456777777665421 1222233456788999986
Q ss_pred CCEEEEe-eCCCeEEEEeCcCCccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCE
Q 008844 228 GQYLLTN-SNDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEW 306 (551)
Q Consensus 228 g~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~ 306 (551)
+..|+.+ ...+.|+.++... ......+...-.... .+++...++.
T Consensus 360 ~~~ly~sD~~~~~I~r~~~~g-----------------------------~~~~~v~~~~~~~p~-----GlAvD~~~~~ 405 (619)
T 3s94_A 360 EGYIYWTDDEVRAIRRSFIDG-----------------------------SGSQFVVTAQIAHPD-----GIAVDWVARN 405 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTS-----------------------------CSCEEEECSSCSCCC-----EEEEETTTTE
T ss_pred CCeEEEEeCCCCeEEEEEcCC-----------------------------CccEEEEECCCCCcC-----ceEEecccCc
Confidence 5555544 4577788887211 100111111111122 7788876666
Q ss_pred EEEeeccCCcceEEEEecCCceeEEEe-cCCCceEEEEEecCCCeEEEEcC--CCcEEEEecCCC
Q 008844 307 VIAGSASKGEHKIYIWDRAGYLVKILE-GPKEALIDLAWHPVHPIIVSVSL--TGWVYIWAKDYT 368 (551)
Q Consensus 307 l~~gs~~~~dg~I~iwd~~~~~~~~l~-~h~~~v~~l~~sp~~~~l~s~s~--dg~i~iW~~~~~ 368 (551)
|+.+... .+.|.+.++.|.....+. ..-....+|++.|...+|+.+.. .+.|...+++..
T Consensus 406 lY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 406 LYWTDTG--TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp EEEEETT--TTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEeCC--CCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 6655542 689999999955555554 23456899999997555554432 356666666543
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.19 E-value=0.059 Score=50.35 Aligned_cols=71 Identities=8% Similarity=0.028 Sum_probs=37.2
Q ss_pred CCCEEEEeeccCC--cceEEEEecCCceeEEEecCC-CceEEEEEecCCCeEEEEcCCC-----cEEEEecCCCCcceee
Q 008844 303 DGEWVIAGSASKG--EHKIYIWDRAGYLVKILEGPK-EALIDLAWHPVHPIIVSVSLTG-----WVYIWAKDYTENWSAF 374 (551)
Q Consensus 303 dg~~l~~gs~~~~--dg~I~iwd~~~~~~~~l~~h~-~~v~~l~~sp~~~~l~s~s~dg-----~i~iW~~~~~~~~~~~ 374 (551)
++++++.|+.+.. ...+.+||+.......+.... ......+..-++.+++.++.++ .|.+||+.+. .|..+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W~~~ 282 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD-KWTVV 282 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT-EEEEC
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC-eEEEC
Confidence 5677777765220 246889998832233332211 1111111222667777777653 3788887653 46544
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.17 E-value=0.046 Score=52.76 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=103.7
Q ss_pred EcCCCCEEEEEeCCCeEEEEeccCCceeeEeeccc--ccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCe--------
Q 008844 31 FNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKE--CVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGE-------- 100 (551)
Q Consensus 31 fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~--h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-------- 100 (551)
.+.+|+-|+++- ++.||.-++......+.+.... --..|..+..+|+|++|+..+ +..|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 345677777664 5788888887555556665431 123678899999999999887 5678888876321
Q ss_pred ----EEEEEEc-------CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 101 ----KITRIVL-------QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 101 ----~~~~~~~-------~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
..+.+.. ..++..+.|||.+.....+++-..++.|++||+.........+.. .. ..+..
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k--~~--------~~fg~ 175 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNK--PN--------NSFGL 175 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESC--CC--------SEEES
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhc--cc--------cccCC
Confidence 2334443 356889999999988889999999999999999874322111110 00 00111
Q ss_pred CCCCCCceEEEEeeCCCEEEEEe--cCceEEEEE
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGN--SKGEILVID 201 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~--~dg~i~i~d 201 (551)
......+.+++|.+++-.|++.+ ..|.|+-.-
T Consensus 176 d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 176 DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 11224788999998776566644 666665443
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.16 E-value=0.11 Score=48.49 Aligned_cols=183 Identities=15% Similarity=0.132 Sum_probs=93.2
Q ss_pred CCEEEEEeCC--CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC----CCEEEEEcCCCeEEEEEEcC
Q 008844 35 GTLLAAGCSD--GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD----KSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 35 g~~latg~~d--g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~ 108 (551)
+.+++.|+.+ ..+.+||..+++....-........-.++.+ ++.+++.|+.+ ..+.+||+.+++....-..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3455566543 5788999987764322111100111122222 56677777754 56888999887654443333
Q ss_pred CC--eeEEEEecCCCCCcEEEEeeCC------CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 008844 109 QT--PLQARLHPGSSTPSLCLACPLS------SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAAC 180 (551)
Q Consensus 109 ~~--~~~~~~~p~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (551)
.+ ...+... + ..+++.++.+ ..+.+||..+........... .+ ....++.
T Consensus 90 ~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~---------~r---------~~~~~~~ 147 (306)
T 3ii7_A 90 TPRDSLAACAA-E---GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT---------QR---------CSHGMVE 147 (306)
T ss_dssp SCCBSCEEEEE-T---TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS---------CC---------BSCEEEE
T ss_pred ccccceeEEEE-C---CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC---------Cc---------ceeEEEE
Confidence 22 1222222 2 2355665543 457788888877554421100 00 0112222
Q ss_pred EeeCCCEEEEEec---------CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC-----CeEEEEe
Q 008844 181 FNKYGDLVYVGNS---------KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND-----RTIRIYD 244 (551)
Q Consensus 181 ~s~~g~~l~~g~~---------dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D-----g~i~iwd 244 (551)
-++++++.|+. -..+.+||+.+.+-...-.......-.+++. -++++++.|+.+ ..+.+||
T Consensus 148 --~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd 222 (306)
T 3ii7_A 148 --ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYD 222 (306)
T ss_dssp --ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEE
T ss_pred --ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEee
Confidence 35666777654 3458899998876533322122111112222 266777777654 3467777
No 316
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.14 E-value=0.17 Score=47.22 Aligned_cols=247 Identities=7% Similarity=0.006 Sum_probs=125.8
Q ss_pred CCCCEEEEEeC--CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC--------------CCEEEEEc
Q 008844 33 RRGTLLAAGCS--DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD--------------KSLTLWDV 96 (551)
Q Consensus 33 ~dg~~latg~~--dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d--------------g~i~vwd~ 96 (551)
.+|.+|+.... ++.|...+.+. .....+... . +--++++|.+|+-+... ..|+..++
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg-~~~~~l~~~----~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDG-SNIHKLSND----T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTS-CSCEEEEEE----E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EeCCEEEEEeCCCCceEEEEcCCC-CCCEEccCC----c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 46777776642 46666666553 334444322 2 23457788888877643 35666666
Q ss_pred CCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEe---eCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQQTPLQARLHPGSSTPSLCLAC---PLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPP 173 (551)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (551)
..+....... .. ...+++.+. .++.+. .....|...++.......+...
T Consensus 96 dg~~~~~l~~--~~--~~~~s~~g~--~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~---------------------- 147 (302)
T 3s25_A 96 NGHGSTVLDP--DP--CIYASLIGN--YIYYLHYDTQTATSLYRIRIDGEEKKKIKNH---------------------- 147 (302)
T ss_dssp TSCCCEEEEC--SC--EEEEEEETT--EEEEEEESSSSCEEEEEEETTSCCCEEEESS----------------------
T ss_pred CCCcceEeec--CC--ccEEEEeCC--EEEEEeecCCCCceEEEEECCCCCeEEEeCC----------------------
Confidence 6554322221 11 224555443 233332 2333455555554333322110
Q ss_pred CCceEEEEeeCCCEEEEEec-CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCcccc
Q 008844 174 FTPTAACFNKYGDLVYVGNS-KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNG 252 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~ 252 (551)
.+ ..++++++.|+-.+. ...|.+.++..+.....+ .. ... ..+.|++.+|+-....+.-+|+..
T Consensus 148 -~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~--~~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~------- 212 (302)
T 3s25_A 148 -YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY--DC--NCY-KPVVLDDTNVYYMDVNRDNAIVHV------- 212 (302)
T ss_dssp -CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE--CS--CEE-EEEEEETTEEEEEEGGGTTEEEEE-------
T ss_pred -Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe--CC--Ccc-ceeeecCCEEEEEEcCCCcEEEEE-------
Confidence 11 235778888876655 678999998877654443 22 222 346699988887654432333330
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEE
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKIL 332 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l 332 (551)
...+.. ...+.. .. ...|+|++++|+.+.... .+.|+.-++.|.....+
T Consensus 213 --------------------~ldG~~-~~~Lt~--~~-------~~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l 261 (302)
T 3s25_A 213 --------------------NINNPN-PVVLTE--AN-------IEHYNVYGSLIFYQRGGD-NPALCVVKNDGTGFKEL 261 (302)
T ss_dssp --------------------CSSSCC-CEECSC--SC-------EEEEEEETTEEEEEECSS-SCEEEEEETTSCCCEEE
T ss_pred --------------------ECCCCC-eEEEeC--CC-------cceEEECCCEEEEEECCC-CcEEEEEECCCCccEEe
Confidence 011111 112211 11 124788999998765422 46788888885444444
Q ss_pred ecCCCceEEEEEecCCCeEEEEcC-CCcEEEEe
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSL-TGWVYIWA 364 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iW~ 364 (551)
... .+. ++++.+.+|+-... .+.|..-+
T Consensus 262 ~~~--~~~--~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 262 AKG--EFC--NINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp EES--CEE--EEEECSSEEEEEETTTCCEEEEE
T ss_pred eCC--ccc--eEEEeCCEEEEEECCCCeEEEEE
Confidence 322 233 34456666655543 34444333
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.05 E-value=0.036 Score=51.96 Aligned_cols=183 Identities=10% Similarity=0.035 Sum_probs=96.4
Q ss_pred CCCEEEEEeCC----CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC------CCEEEEEcCCCeEEE
Q 008844 34 RGTLLAAGCSD----GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD------KSLTLWDVLKGEKIT 103 (551)
Q Consensus 34 dg~~latg~~d----g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d------g~i~vwd~~~~~~~~ 103 (551)
++.+++.|+.+ ..+.+||+.++.....-..........++.+ ++++++.|+.+ ..+.+||+.+.....
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 66777777754 6788999988765433221110111122222 56777777754 468899998876544
Q ss_pred EEEcCCC--eeEEEEecCCCCCcEEEEeeC---------CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 104 RIVLQQT--PLQARLHPGSSTPSLCLACPL---------SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 104 ~~~~~~~--~~~~~~~p~~~~~~~~~~~~~---------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
.-..+.+ ...+... + ..+++.++. ...+.+||+.+.....+..... .
T Consensus 133 ~~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---------~--------- 190 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA-N---GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE---------A--------- 190 (306)
T ss_dssp ECCCSSCCBSCEEEEE-T---TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS---------C---------
T ss_pred CCCCcCCcceeEEEEE-C---CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc---------h---------
Confidence 3222221 1122222 2 234555542 3457788888886655421000 0
Q ss_pred CCCceEEEEeeCCCEEEEEecC-----ceEEEEECCCCcEEEeeeccCc-cceEEEEEeeCCCEEEEeeCC-----CeEE
Q 008844 173 PFTPTAACFNKYGDLVYVGNSK-----GEILVIDHKSNQIRALVPVSGA-AVIKNIVFSRNGQYLLTNSND-----RTIR 241 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~t~s~D-----g~i~ 241 (551)
.....++.+ ++++++.|+.+ ..+.+||+.+.+-...-..... .....+.+ ++++++.|+.+ ..+.
T Consensus 191 r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~ 266 (306)
T 3ii7_A 191 RKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHIL 266 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEE
T ss_pred hhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEE
Confidence 001122222 56677777653 4689999988765433221221 11222222 67777777754 4577
Q ss_pred EEe
Q 008844 242 IYD 244 (551)
Q Consensus 242 iwd 244 (551)
+||
T Consensus 267 ~yd 269 (306)
T 3ii7_A 267 EYN 269 (306)
T ss_dssp EEE
T ss_pred EEc
Confidence 777
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.95 E-value=0.082 Score=49.29 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=33.1
Q ss_pred CCCEEEEEecC-----ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC-----CeEEEEe
Q 008844 184 YGDLVYVGNSK-----GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND-----RTIRIYD 244 (551)
Q Consensus 184 ~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D-----g~i~iwd 244 (551)
++++++.|+.+ ..+.+||+.+.+-...-.......-.+++ .-++++++.|+.+ ..+.+||
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd 228 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYN 228 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEe
Confidence 55666666543 45889998887654332212211111222 2366777777664 4577887
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.80 E-value=0.1 Score=48.91 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=32.3
Q ss_pred CCCEEEEEecC-----ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC-----CeEEEEe
Q 008844 184 YGDLVYVGNSK-----GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND-----RTIRIYD 244 (551)
Q Consensus 184 ~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D-----g~i~iwd 244 (551)
++++++.|+.+ ..+.+||+.+.+-...-.......-.+++. -++++++.|+.+ ..+.+||
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd 190 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYY 190 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEEEEeCCCCCCcCceEEEEe
Confidence 56666666543 368899998876543322121111112222 266777777654 3467777
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.80 E-value=0.34 Score=45.34 Aligned_cols=48 Identities=8% Similarity=-0.044 Sum_probs=25.5
Q ss_pred EEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC
Q 008844 37 LLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA 87 (551)
Q Consensus 37 ~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~ 87 (551)
+++.|+ ..+.+||..+++... .................++.+++.|+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~ 54 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGL 54 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEE
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCc
Confidence 444555 579999999887543 211100112222223346777777773
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.78 E-value=0.4 Score=45.87 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=43.9
Q ss_pred ceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeEeec-----ccccccEEEEEecCC---CCEEEEEe-C------
Q 008844 24 GVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRGIAKELRD-----KECVAAITSVCWSKY---GHRILVSA-A------ 87 (551)
Q Consensus 24 ~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~~~~~~~~-----~~h~~~V~~l~~s~~---g~~l~s~s-~------ 87 (551)
.....|+|.|+|+ +++ +...|.|++++.. +.....+.. .........|+|+|+ +.+|+.+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4568999999999 655 4567999999854 332111110 011346789999996 44555443 2
Q ss_pred -CCCEEEEEcCC
Q 008844 88 -DKSLTLWDVLK 98 (551)
Q Consensus 88 -dg~i~vwd~~~ 98 (551)
...|..|++..
T Consensus 96 ~~~~v~r~~~~~ 107 (353)
T 2g8s_A 96 AGTAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEEEECT
T ss_pred ceeEEEEEEECC
Confidence 23466666643
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.72 E-value=0.082 Score=49.33 Aligned_cols=184 Identities=14% Similarity=0.132 Sum_probs=94.7
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCC-----CEEEEEcCCCeEEE
Q 008844 34 RGTLLAAGCSD-----GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADK-----SLTLWDVLKGEKIT 103 (551)
Q Consensus 34 dg~~latg~~d-----g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg-----~i~vwd~~~~~~~~ 103 (551)
++.+++.|+.+ ..+.+||..+.+....-........-.++.+ ++.+++.|+.++ .+.+||+.+.....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 66777777754 3588899887664332211100111122222 567777777543 47788888776444
Q ss_pred EEEcCCC--eeEEEEecCCCCCcEEEEeeC-------CCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCC
Q 008844 104 RIVLQQT--PLQARLHPGSSTPSLCLACPL-------SSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPF 174 (551)
Q Consensus 104 ~~~~~~~--~~~~~~~p~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (551)
.-..+.+ ...+... + ..+++.++. ...+.+||+.+.....+.... ..+ .
T Consensus 139 ~~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---------~~r---------~ 196 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV-G---GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS---------TRR---------S 196 (302)
T ss_dssp ECCCSSCCBSCEEEEE-T---TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS---------SCC---------B
T ss_pred cCCCCCcccCceEEEE-C---CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc---------ccc---------c
Confidence 3222221 1122222 1 235555543 245778888887665542100 000 0
Q ss_pred CceEEEEeeCCCEEEEEecC-----ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC-----eEEEEe
Q 008844 175 TPTAACFNKYGDLVYVGNSK-----GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR-----TIRIYD 244 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg-----~i~iwd 244 (551)
...++. -++.+++.|+.+ ..+.+||+.+.+-...-.......-.++ ..-++++++.|+.++ .+.+||
T Consensus 197 ~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd 273 (302)
T 2xn4_A 197 GAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV-CAVNGLLYVVGGDDGSCNLASVEYYN 273 (302)
T ss_dssp SCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred cccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE-EEECCEEEEECCcCCCcccccEEEEc
Confidence 122222 256777777654 3699999988765433221211111112 223677777777653 477787
No 323
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.71 E-value=0.17 Score=56.47 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=152.4
Q ss_pred CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcCCCeeEEEEecCCCCCc
Q 008844 45 GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQQTPLQARLHPGSSTPS 124 (551)
Q Consensus 45 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 124 (551)
.+|.|.|+..+..+..... .--+.-.+|..+.|+.-. ..++.|+|+.+...+..+....++....|....
T Consensus 48 ~~vvIidl~~~~~~~rrpi-----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~---- 117 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---- 117 (1630)
T ss_pred ceEEEEECCCCCCcccccc-----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCC----
Confidence 4788999887654322111 111233567666666554 789999999999999999999998888887642
Q ss_pred EEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEe-------cCceE
Q 008844 125 LCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGN-------SKGEI 197 (551)
Q Consensus 125 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~-------~dg~i 197 (551)
.++--.+..|+-|++....... ...+....+ ....|..-..+++.++++..+ ..|.+
T Consensus 118 -~l~lVT~~aVyHW~~~~~s~P~---k~fdR~~~L------------~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 118 -TVALVTDNAVYHWSMEGESQPV---KMFDRHSSL------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred -eeEEEcCCeEEEeccCCCCccH---HHHhcchhc------------ccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 4555567789999996532211 111100000 012677778888888877543 35788
Q ss_pred EEEECCCCcEEEeeeccCccceEEEEEee--C-CCEEEEee---CCCeEEEEeCcCCccccchhhhhhhccCCCCCccee
Q 008844 198 LVIDHKSNQIRALVPVSGAAVIKNIVFSR--N-GQYLLTNS---NDRTIRIYDNLLPLKNGLEALVDIEKGIAEPNGIEK 271 (551)
Q Consensus 198 ~i~d~~~~~~~~~~~~~~~~~i~~l~~s~--~-g~~l~t~s---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (551)
.+|....+.....- +|.+....+.+.. . ...++.+. ..+.++|.++-.+..+....
T Consensus 182 QLyS~er~~sQ~ie--gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f---------------- 243 (1630)
T 1xi4_A 182 QLYSVDRKVSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF---------------- 243 (1630)
T ss_pred eeeecccccchhhh--HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC----------------
Confidence 88888765432221 3433322222211 1 11222221 13688888843321111000
Q ss_pred eeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-CceeEEEecCCCceEEEEEecCCCe
Q 008844 272 MKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GYLVKILEGPKEALIDLAWHPVHPI 350 (551)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~~~~~l~~h~~~v~~l~~sp~~~~ 350 (551)
..+.+..+... ......++ ++..|+.-..+..-+. -|.|++||+. |.++..-+-...+|...+-+....-
T Consensus 244 ----~kk~~~~~~~~-~~~~Dfpv-~~~vs~k~g~iy~itk---~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g 314 (1630)
T 1xi4_A 244 ----PKKAVDVFFPP-EAQNDFPV-AMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 314 (1630)
T ss_pred ----ccccccccCCc-ccccCcce-EEEeccccCEEEEEec---CceEEEEecccchhhhhccccCCceEEeccCCCCCc
Confidence 00111111111 11222222 6788887778888887 7999999999 8877665555556655555444444
Q ss_pred EEEEcCCCcEEEEecCC
Q 008844 351 IVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 351 l~s~s~dg~i~iW~~~~ 367 (551)
++.....|.|.--.++.
T Consensus 315 ~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 315 IIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred eEEEcCCceEEEEEEcc
Confidence 45555667666555554
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.64 E-value=0.077 Score=49.92 Aligned_cols=207 Identities=10% Similarity=-0.056 Sum_probs=100.9
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC-----C------CeEEEEeccCCceeeEeecccccccEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS-----D------GSCVIWDFETRGIAKELRDKECVAAIT 71 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~-----d------g~I~iwd~~~~~~~~~~~~~~h~~~V~ 71 (551)
+.++|+.+++... ...........+.+...++.+++.|+. . ..+.+||..+++....-........-.
T Consensus 15 ~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 93 (315)
T 4asc_A 15 AVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFG 93 (315)
T ss_dssp EEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCE
T ss_pred eEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhcee
Confidence 5577888776532 111001112223333457888888873 1 127788888766432211110011111
Q ss_pred EEEecCCCCEEEEEeCC--------CCEEEEEcCCCeEEEEEEcCCC--eeEEEEecCCCCCcEEEEeeC------CCCc
Q 008844 72 SVCWSKYGHRILVSAAD--------KSLTLWDVLKGEKITRIVLQQT--PLQARLHPGSSTPSLCLACPL------SSAP 135 (551)
Q Consensus 72 ~l~~s~~g~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~------~~~i 135 (551)
.+.+ ++.+++.|+.+ ..+.+||+.+++-...-..+.+ ...+... + ..+++.++. ...+
T Consensus 94 ~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~ 167 (315)
T 4asc_A 94 LGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH-M---DLVYVIGGKGSDRKCLNKM 167 (315)
T ss_dssp EEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T---TEEEEECCBCTTSCBCCCE
T ss_pred EEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE-C---CEEEEEeCCCCCCcccceE
Confidence 2222 56666776632 4588999988764332222222 1222222 2 225555554 2457
Q ss_pred EEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecCc-----eEEEEECCCCcEEEe
Q 008844 136 MIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSKG-----EILVIDHKSNQIRAL 210 (551)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg-----~i~i~d~~~~~~~~~ 210 (551)
.+||..+.....+.... .. .....++. -++++++.|+.++ .+.+||+.+.+-...
T Consensus 168 ~~yd~~~~~W~~~~~~p---------~~---------r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 168 CVYDPKKFEWKELAPMQ---------TA---------RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp EEEETTTTEEEECCCCS---------SC---------CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred EEEeCCCCeEEECCCCC---------Cc---------hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 78888887655432100 00 00122222 2667777777643 588999988765433
Q ss_pred eeccCccceEEEEEeeCCCEEEEeeCC
Q 008844 211 VPVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 211 ~~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
-.......-.+++ .-++++++.|+.+
T Consensus 228 ~~~p~~r~~~~~~-~~~~~l~v~GG~~ 253 (315)
T 4asc_A 228 EAFPQERSSLSLV-SLVGTLYAIGGFA 253 (315)
T ss_dssp CCCSSCCBSCEEE-EETTEEEEEEEEE
T ss_pred CCCCCcccceeEE-EECCEEEEECCcc
Confidence 2212211111222 2366777777653
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.56 E-value=0.7 Score=45.83 Aligned_cols=63 Identities=6% Similarity=0.120 Sum_probs=40.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee--Eeecc----cccccEEEEEecCC---CCEEEEEe
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAK--ELRDK----ECVAAITSVCWSKY---GHRILVSA 86 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~--~~~~~----~h~~~V~~l~~s~~---g~~l~s~s 86 (551)
.....|+|.|+|+++++-...+.|++++..++.... .+... .....+..|+|+|+ +.+|+.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 356799999999988876544578888865554322 22110 01456789999995 45554443
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.55 E-value=0.52 Score=44.17 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCCEEEEEecC-------ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC------CCeEEEEe
Q 008844 184 YGDLVYVGNSK-------GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN------DRTIRIYD 244 (551)
Q Consensus 184 ~g~~l~~g~~d-------g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~------Dg~i~iwd 244 (551)
++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++ ..++++++.|+. -..+.+||
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd 181 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI-SHNGMIYCLGGKTDDKKCTNRVFIYN 181 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE-EETTEEEEECCEESSSCBCCCEEEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE-EECCEEEEEcCCCCCCCccceEEEEc
Confidence 55666777653 35888999887654332111111111122 246667777754 23477777
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.50 E-value=0.26 Score=46.23 Aligned_cols=207 Identities=12% Similarity=0.011 Sum_probs=99.7
Q ss_pred ccccccCCCCccceeecccccceEEEEEEcCCCCEEEEEeC----CC-------eEEEEeccCCceeeEeecccccccEE
Q 008844 3 APIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCS----DG-------SCVIWDFETRGIAKELRDKECVAAIT 71 (551)
Q Consensus 3 l~lwd~~~~~~~~~l~~~~h~~~V~~l~fs~dg~~latg~~----dg-------~I~iwd~~~~~~~~~~~~~~h~~~V~ 71 (551)
+..||+.+++... ...........+.+...++.+++.|+. ++ .+.+||..+.+....-..........
T Consensus 26 ~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 26 AVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred eEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 4567887776543 111100111122234457888888873 12 17788887765433211110011111
Q ss_pred EEEecCCCCEEEEEeCC-------CCEEEEEcCCCeEEEEEEcCCCe--eEEEEecCCCCCcEEEEeeC------CCCcE
Q 008844 72 SVCWSKYGHRILVSAAD-------KSLTLWDVLKGEKITRIVLQQTP--LQARLHPGSSTPSLCLACPL------SSAPM 136 (551)
Q Consensus 72 ~l~~s~~g~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~------~~~i~ 136 (551)
.+.+ ++.+++.|+.+ ..+.+||+.+.+-...-..+.+. ..+.. .+ ..+++.++. ...+.
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~---~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN---GMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ET---TEEEEECCEESSSCBCCCEE
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-EC---CEEEEEcCCCCCCCccceEE
Confidence 2222 56677777753 24788888877654432222221 12222 22 234555543 24578
Q ss_pred EEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEEecC-----ceEEEEECCCCcEEEee
Q 008844 137 IVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVGNSK-----GEILVIDHKSNQIRALV 211 (551)
Q Consensus 137 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~ 211 (551)
+||+.+.....+..... .+ ....++. -++++++.|+.+ ..+.+||+.+.+-...-
T Consensus 179 ~yd~~~~~W~~~~~~p~---------~r---------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 238 (318)
T 2woz_A 179 IYNPKKGDWKDLAPMKT---------PR---------SMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT 238 (318)
T ss_dssp EEETTTTEEEEECCCSS---------CC---------BSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC
T ss_pred EEcCCCCEEEECCCCCC---------Cc---------ccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECC
Confidence 88988877655421100 00 0112222 356777777643 35789999887654332
Q ss_pred eccCccceEEEEEeeCCCEEEEeeCC
Q 008844 212 PVSGAAVIKNIVFSRNGQYLLTNSND 237 (551)
Q Consensus 212 ~~~~~~~i~~l~~s~~g~~l~t~s~D 237 (551)
..+....-.+++ .-++++++.|+.+
T Consensus 239 ~~p~~r~~~~~~-~~~~~i~v~GG~~ 263 (318)
T 2woz_A 239 EFPQERSSISLV-SLAGSLYAIGGFA 263 (318)
T ss_dssp CCSSCCBSCEEE-EETTEEEEECCBC
T ss_pred CCCCcccceEEE-EECCEEEEECCee
Confidence 212111111222 2356777777654
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.48 E-value=0.32 Score=48.33 Aligned_cols=60 Identities=18% Similarity=0.393 Sum_probs=39.5
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEE--eeec-----cCccceEEEEEeeC---CCEEEEe
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRA--LVPV-----SGAAVIKNIVFSRN---GQYLLTN 234 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~~-----~~~~~i~~l~~s~~---g~~l~t~ 234 (551)
....++|.|+|+++++-...+.|++++..++.... .+.. .....+..|+|+|+ +.+|.++
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 67899999999966665444579999876555432 2211 13466789999995 4444444
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.47 E-value=0.55 Score=45.38 Aligned_cols=170 Identities=11% Similarity=0.093 Sum_probs=98.8
Q ss_pred EEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccC---ccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhh
Q 008844 180 CFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSG---AAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEAL 256 (551)
Q Consensus 180 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~---~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~ 256 (551)
....+|..++++- ++.|+.-++......+.+...+ -..|..+..+|+|.+||..+ +..|.|..+-.+........
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 4455666666654 4688888887554455554342 33688899999999999884 56888887221111100000
Q ss_pred hhhhccCCCCCcceeeeeccceeeeeeccccccc-ceeeeeeeEEcC---CCCEEEEeeccCCcceEEEEecC---Ccee
Q 008844 257 VDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSI-TKMHWKAPCFSG---DGEWVIAGSASKGEHKIYIWDRA---GYLV 329 (551)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~s~---dg~~l~~gs~~~~dg~I~iwd~~---~~~~ 329 (551)
... ... .+.+.-....+ ....+..+.|+| .+..|++-.. |+.|++||+. .++.
T Consensus 105 --~~~--------------~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts---D~~Ir~yDl~~s~~~P~ 164 (452)
T 3pbp_A 105 --IQD--------------AFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE---DDTITMFDILNSQEKPI 164 (452)
T ss_dssp --HHH--------------TTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET---TSCEEEEETTCTTSCCE
T ss_pred --ccc--------------ccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec---CCEEEEEEcccCCCCCc
Confidence 000 000 11111100000 122334778888 4568888888 8999999998 2333
Q ss_pred EEEec---------CCCceEEEEEecCCCeEEEE--cCCCcEEEEecCCCCcce
Q 008844 330 KILEG---------PKEALIDLAWHPVHPIIVSV--SLTGWVYIWAKDYTENWS 372 (551)
Q Consensus 330 ~~l~~---------h~~~v~~l~~sp~~~~l~s~--s~dg~i~iW~~~~~~~~~ 372 (551)
.|.. ....|.+++|.+++-.|... +..|.|+-.-.--+.+|.
T Consensus 165 -~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~~~~ 217 (452)
T 3pbp_A 165 -VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPSVLL 217 (452)
T ss_dssp -EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCCCSEEE
T ss_pred -chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCCccccc
Confidence 3321 22568899999987766664 478888876655555554
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.31 E-value=0.43 Score=45.58 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=14.4
Q ss_pred CCCEEEEEeCC-CeEEEEeccC
Q 008844 34 RGTLLAAGCSD-GSCVIWDFET 54 (551)
Q Consensus 34 dg~~latg~~d-g~I~iwd~~~ 54 (551)
++.+++.|+.+ ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 56676777643 4688888864
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.30 E-value=0.21 Score=46.67 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=93.8
Q ss_pred CCCEEEEEeC----C-----CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCC-----CCEEEEEcCCC
Q 008844 34 RGTLLAAGCS----D-----GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAAD-----KSLTLWDVLKG 99 (551)
Q Consensus 34 dg~~latg~~----d-----g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d-----g~i~vwd~~~~ 99 (551)
++.+++.|+. + ..+.+||+.+......-..........++.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5667777765 2 4588899887654332111100111222223 56667776643 46888998877
Q ss_pred eEEEEEEcCCC--eeEEEEecCCCCCcEEEEeeCC-----CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 100 EKITRIVLQQT--PLQARLHPGSSTPSLCLACPLS-----SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 100 ~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
+....-..+.+ ...+... + ..+++.++.+ ..+.+||+.+.....+.... ..
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---------~~--------- 205 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL-N---RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN---------TI--------- 205 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE-T---TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS---------SC---------
T ss_pred eEeECCCCCccccceEEEEE-C---CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC---------Cc---------
Confidence 64433222221 1122222 1 2355555543 45778888877655432100 00
Q ss_pred CCCceEEEEeeCCCEEEEEecC-----ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCC-----CeEEE
Q 008844 173 PFTPTAACFNKYGDLVYVGNSK-----GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSND-----RTIRI 242 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~D-----g~i~i 242 (551)
.....++.+ ++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. -++++++.|+.+ ..+.+
T Consensus 206 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~ 282 (308)
T 1zgk_A 206 RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVEC 282 (308)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEE
T ss_pred cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEE
Confidence 002222222 66777777654 469999998876543322121111112222 267777777654 34667
Q ss_pred Ee
Q 008844 243 YD 244 (551)
Q Consensus 243 wd 244 (551)
||
T Consensus 283 yd 284 (308)
T 1zgk_A 283 YD 284 (308)
T ss_dssp EE
T ss_pred Ec
Confidence 77
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.22 E-value=0.77 Score=42.65 Aligned_cols=183 Identities=13% Similarity=0.173 Sum_probs=113.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-CeEEEEEE
Q 008844 28 CIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK-GEKITRIV 106 (551)
Q Consensus 28 ~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~ 106 (551)
+.-.+|..+.||.-. ..++.|+|+++...++.+.- ...|..=.|-.+. .|+..+ +..|.-|++.. ..+.+.+.
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~---~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec---CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeee
Confidence 345689888888765 67899999999988888765 4688888887654 444444 46799999864 35666665
Q ss_pred cCCC-----eeEEEEecCCCCCcEEEEee------CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 107 LQQT-----PLQARLHPGSSTPSLCLACP------LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 107 ~~~~-----~~~~~~~p~~~~~~~~~~~~------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.+.. +...+..++. ..+++.+- -.|.+.+|....+....+.
T Consensus 145 R~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie-------------------------- 196 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE-------------------------- 196 (365)
T ss_dssp CCGGGTTCEEEEEEECTTS--CEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC--------------------------
T ss_pred cchhcccceEEEEEECCCC--CEEEEEeEeccCCccceeEEEEeecccccceee--------------------------
Confidence 5432 4444444443 44555543 2366788888877655441
Q ss_pred ceEEEE---eeCC-----CEEEEEe---cCceEEEEECCCC---c------EEEeeec--cCccceEEEEEeeCCCEEEE
Q 008844 176 PTAACF---NKYG-----DLVYVGN---SKGEILVIDHKSN---Q------IRALVPV--SGAAVIKNIVFSRNGQYLLT 233 (551)
Q Consensus 176 i~~~~~---s~~g-----~~l~~g~---~dg~i~i~d~~~~---~------~~~~~~~--~~~~~i~~l~~s~~g~~l~t 233 (551)
-.+.+| -.+| .+++.+. ..+.++|.++... . .+..+.. .....-.++..++.-..++.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 112222 1111 1222222 1268999998432 1 1111110 12455667888888778888
Q ss_pred eeCCCeEEEEe
Q 008844 234 NSNDRTIRIYD 244 (551)
Q Consensus 234 ~s~Dg~i~iwd 244 (551)
-+.-|.|++||
T Consensus 277 iTK~G~ihlyD 287 (365)
T 2xzh_A 277 ITKYGYIHLYD 287 (365)
T ss_dssp EETTSEEEEEE
T ss_pred EeCCcEEEEEE
Confidence 88999999999
No 333
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.10 E-value=1.3 Score=44.25 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=50.0
Q ss_pred CceEEEEeeCCCEEEEEe-cCceEEEEECCCC------c-------EEEeeeccCccceEEEEEeeCCCEEEEeeCCCeE
Q 008844 175 TPTAACFNKYGDLVYVGN-SKGEILVIDHKSN------Q-------IRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTI 240 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~------~-------~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i 240 (551)
.+..+.++|+|+++++++ .+.++.++|+... + ..... .-.-.....+|.++|....+.--|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cCCCcccEEEECCCCceEeeeeecceE
Confidence 567788999999988876 4789999998742 1 12333 234456778999999555555679999
Q ss_pred EEEe
Q 008844 241 RIYD 244 (551)
Q Consensus 241 ~iwd 244 (551)
..|+
T Consensus 402 vkWn 405 (638)
T 3sbq_A 402 VKWN 405 (638)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9999
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.04 E-value=0.35 Score=45.83 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=38.4
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEe--ee---ccCccceEEEEEeeC
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRAL--VP---VSGAAVIKNIVFSRN 227 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~--~~---~~~~~~i~~l~~s~~ 227 (551)
....++|.|+|.++++--..|.|++++...+..... +. .........|+|+|+
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 678999999998666655589999998766654222 21 133567899999985
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.93 E-value=0.097 Score=45.63 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=82.7
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEE------EeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCC
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIR------ALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLP 248 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~------~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~ 248 (551)
.+..++|+|+|.+.++ .+|.++-.+..+.... ..+-...-....++.|.|+|.+.++ .||.|.-++ .|
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~--pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS--PP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES--CC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeC--CC
Confidence 6779999999987766 7888888887653221 1110011112478899999987777 569887776 22
Q ss_pred ccccchhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC-Cc
Q 008844 249 LKNGLEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA-GY 327 (551)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~-~~ 327 (551)
......-+.. .. ..-..-=. .+..+.|.|+|.+.++. . +.++-+... +.
T Consensus 116 ~~~~~~Wl~~------------------a~--~vg~~gw~-----~~~~lff~p~G~Lyav~-d----g~lyr~~~P~~~ 165 (236)
T 1tl2_A 116 QSDTDNWIAR------------------AT--EVGSGGWS-----GFKFLFFHPNGYLYAVH-G----QQFYKALPPVSN 165 (236)
T ss_dssp CSTTCCHHHH------------------SE--EEECSSGG-----GEEEEEECTTSCEEEEE-T----TEEEEECCCSST
T ss_pred cCCCCceecc------------------cc--EeccCCCC-----ceEEEEECCCceEEEEe-C----CcEEecCCCCCC
Confidence 1111111100 00 00000001 12388999999988877 4 345433322 11
Q ss_pred ------eeEEEe-cCCCceEEEEEecCCCeEEEEcCCCcEEEEecC
Q 008844 328 ------LVKILE-GPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKD 366 (551)
Q Consensus 328 ------~~~~l~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~ 366 (551)
....+. ..-.....+.|.|++.+.++. +|. ||...
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~--~Y~~~ 207 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK--FYEDY 207 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE--EEEES
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe--EEecC
Confidence 112222 222345557788988877666 664 44443
No 336
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.82 E-value=1.4 Score=42.10 Aligned_cols=106 Identities=12% Similarity=0.118 Sum_probs=60.6
Q ss_pred CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeC---C
Q 008844 109 QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKY---G 185 (551)
Q Consensus 109 ~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g 185 (551)
..+..+.|.|++ .++++...+.|.+++ ..+......+... .........++++|+ +
T Consensus 29 ~~P~~ia~~pdG----~l~V~e~~g~I~~~d-~~G~~~~~~~~v~----------------~~g~~g~~gia~~pdf~~~ 87 (354)
T 3a9g_A 29 EVPWSIAPLGGG----RYLVTERPGRLVLIS-PSGKKLVASFDVA----------------NVGEAGLLGLALHPEFPKK 87 (354)
T ss_dssp SCEEEEEEEETT----EEEEEETTTEEEEEC-SSCEEEEEECCCC----------------CSTTCSEEEEEECTTTTTS
T ss_pred CCCeEEEEcCCC----eEEEEeCCCEEEEEe-CCCceEeecccee----------------ecCCCceeeEEeCCCCCcC
Confidence 457788899876 355566668888886 3333111111000 000126789999998 5
Q ss_pred CEEEEEec----C----ceEEEEECCCC--c-----E-EEeeeccCccceEEEEEeeCCCEEEEee
Q 008844 186 DLVYVGNS----K----GEILVIDHKSN--Q-----I-RALVPVSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 186 ~~l~~g~~----d----g~i~i~d~~~~--~-----~-~~~~~~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
..|+++.. + ..|..|+.... . . +..++.........|+|.|+|.++++.+
T Consensus 88 g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 88 SWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp CEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred CEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56666554 3 67888887654 1 1 1112211122346799999998666643
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.63 E-value=1.4 Score=40.90 Aligned_cols=143 Identities=10% Similarity=0.069 Sum_probs=83.2
Q ss_pred EEEEeeCCCEEEEEe----cCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeC-CCeEEEEeCcCCcccc
Q 008844 178 AACFNKYGDLVYVGN----SKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSN-DRTIRIYDNLLPLKNG 252 (551)
Q Consensus 178 ~~~~s~~g~~l~~g~----~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~-Dg~i~iwd~~~~~~~~ 252 (551)
+..|++++++|+-.. ....|+..++......... .+.. ..|+++++.|+-.+. ...|.+.++
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt--~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l------- 174 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK--NHYL----FTCNTSDRYFYYNNPKNGQLYRYDT------- 174 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEE--SSCC----CCSEEETTEEEEECTTTCCEEEEET-------
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEe--CCCc----eEeeEECCEEEEEeCCCceEEEEEC-------
Confidence 347888998888765 3556777787755443333 2222 457888988886655 456666651
Q ss_pred chhhhhhhccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecCCceeEEE
Q 008844 253 LEALVDIEKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRAGYLVKIL 332 (551)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~~~~~~~l 332 (551)
.+......+. ... ...++|++.+|+...... ...|+.-++.|.....|
T Consensus 175 ----------------------~g~~~~~l~~---~~~------~~~~~P~g~~iy~t~~~~-~~~I~~~~ldG~~~~~L 222 (302)
T 3s25_A 175 ----------------------ASQSEALFYD---CNC------YKPVVLDDTNVYYMDVNR-DNAIVHVNINNPNPVVL 222 (302)
T ss_dssp ----------------------TTTEEEEEEC---SCE------EEEEEEETTEEEEEEGGG-TTEEEEECSSSCCCEEC
T ss_pred ----------------------CCCCEEEEeC---CCc------cceeeecCCEEEEEEcCC-CcEEEEEECCCCCeEEE
Confidence 1122112221 111 123569999999877632 24677777775555555
Q ss_pred ecCCCceEEEEEecCCCeEEEEcC--CCcEEEEecCCCC
Q 008844 333 EGPKEALIDLAWHPVHPIIVSVSL--TGWVYIWAKDYTE 369 (551)
Q Consensus 333 ~~h~~~v~~l~~sp~~~~l~s~s~--dg~i~iW~~~~~~ 369 (551)
.. ..+ ..|+|++.+|+-++. .+.|..-+++...
T Consensus 223 t~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 223 TE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp SC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred eC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 42 233 347888888876532 3456666665543
No 338
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.51 E-value=2 Score=41.72 Aligned_cols=183 Identities=14% Similarity=0.169 Sum_probs=114.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCC-CeEEEEEE
Q 008844 28 CIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLK-GEKITRIV 106 (551)
Q Consensus 28 ~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~ 106 (551)
+.-.+|..+.||.-. ..++.|+|+++...++.+.-. ..|..=.|-.+. .|+..+ +..|.-|++.. ..++..+.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFd 143 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFD 143 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhhee
Confidence 445788888888765 689999999999888887653 567777886544 455444 56899999864 35666665
Q ss_pred cCC-----CeeEEEEecCCCCCcEEEEee------CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008844 107 LQQ-----TPLQARLHPGSSTPSLCLACP------LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFT 175 (551)
Q Consensus 107 ~~~-----~~~~~~~~p~~~~~~~~~~~~------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (551)
.+. .+......++. ..++++|- ..|.+.+|....+....+.
T Consensus 144 R~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie-------------------------- 195 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE-------------------------- 195 (494)
T ss_dssp CCGGGTTCEEEEEEECTTS--SEEEEEEEEEETTEEEEEEEEEESTTCCEEEEC--------------------------
T ss_pred cchhcccceEEEEEECCCC--CeEEEEeecccCCcccceEEEeeccccccchhe--------------------------
Confidence 543 24444455543 44555443 2366788888877655441
Q ss_pred ceEEEE---eeCC-----CEEEEEec---CceEEEEECCCC--------cEEEeeec---cCccceEEEEEeeCCCEEEE
Q 008844 176 PTAACF---NKYG-----DLVYVGNS---KGEILVIDHKSN--------QIRALVPV---SGAAVIKNIVFSRNGQYLLT 233 (551)
Q Consensus 176 i~~~~~---s~~g-----~~l~~g~~---dg~i~i~d~~~~--------~~~~~~~~---~~~~~i~~l~~s~~g~~l~t 233 (551)
-.+.+| -.+| .+++.+.. .+.++|.++... +....+.. .....-.++..++.-..++.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 112222 1111 12332322 378999998543 11111111 12455667888888888888
Q ss_pred eeCCCeEEEEe
Q 008844 234 NSNDRTIRIYD 244 (551)
Q Consensus 234 ~s~Dg~i~iwd 244 (551)
-+.-|.|++||
T Consensus 276 iTK~G~i~lyD 286 (494)
T 1bpo_A 276 ITKYGYIHLYD 286 (494)
T ss_dssp EETTSEEEEEE
T ss_pred EecCceEEEEe
Confidence 88999999999
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.45 E-value=0.4 Score=41.81 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=42.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCce------eeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGI------AKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWD 95 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~------~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd 95 (551)
..+.+++|+|+|.+.++ .+|.+.-.+..+... ...+-..+ -..-.++.|.|+|.+.++ .||.|.-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G-w~~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGG-WNQFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSC-GGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccc-cccceEEEECCCCCEEEe--CCCEEEEeC
Confidence 35779999999997776 678776666544221 12221111 112478899999987776 468776555
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.38 E-value=2.6 Score=42.25 Aligned_cols=268 Identities=11% Similarity=0.045 Sum_probs=142.1
Q ss_pred EEEEEeCCCeEEEEeccCCceeeEeecccc-----------------------cccE--EEEEecC---CCCEEEEEeC-
Q 008844 37 LLAAGCSDGSCVIWDFETRGIAKELRDKEC-----------------------VAAI--TSVCWSK---YGHRILVSAA- 87 (551)
Q Consensus 37 ~latg~~dg~I~iwd~~~~~~~~~~~~~~h-----------------------~~~V--~~l~~s~---~g~~l~s~s~- 87 (551)
.+.+|+..|.|+|+-+-+++.+..+..... .+.. ..+++.. ||+||+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 366888899999999999888776642100 0011 1334432 5788888775
Q ss_pred CCCEEEEEcCCCeEEEEEEcCC--CeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCC
Q 008844 88 DKSLTLWDVLKGEKITRIVLQQ--TPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRN 165 (551)
Q Consensus 88 dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (551)
+..|...++...++-..+..+. .+..+++..... ..++++.+..... +. .....+
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~-T~yv~~~~e~~~P--------------~p--ndg~~~------ 208 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPH-TKYVFANAEFIIP--------------HP--NDGKVF------ 208 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSB-CCEEEEEECSCEE--------------SS--CSSSCC------
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCC-ccEEEecceeecc--------------CC--CCCccc------
Confidence 6678888888888777776654 456666652111 2234433322100 00 000000
Q ss_pred CCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC-------
Q 008844 166 KYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR------- 238 (551)
Q Consensus 166 ~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg------- 238 (551)
.+ ....++ +.....|..+.+....+.. .+....+...++|.+.++.+.+.
T Consensus 209 ---------~~-----~~~~~y-------~~f~~iD~~tm~v~~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~ 265 (638)
T 3sbq_A 209 ---------DL-----QDENSY-------TMYNAIDAETMEMAFQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLG 265 (638)
T ss_dssp ---------CT-----TSTTEE-------EEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred ---------cc-----CChhhc-------eEEEEEcCCccEEEEEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChh
Confidence 00 000111 1233446666666555432 33455567788888888776543
Q ss_pred --------eEEEEeCcCCccccchhhhhh--hccCCCCC--cceeeeecc-----ceeeeeecccccccceeeeeeeEEc
Q 008844 239 --------TIRIYDNLLPLKNGLEALVDI--EKGIAEPN--GIEKMKMVG-----SKCLALFREFQDSITKMHWKAPCFS 301 (551)
Q Consensus 239 --------~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~s 301 (551)
.+.++++ ..+... .+...... ++..+.... ...+..+..... -..+.++
T Consensus 266 em~~~e~D~~~vfn~--------~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pks------PHGv~vs 331 (638)
T 3sbq_A 266 GMMRNERDWVVVFDI--------HAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKN------PHGCNTS 331 (638)
T ss_dssp HHTCSSCEEEEEEEH--------HHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSS------CCCEEEC
T ss_pred hcCcccccEEEEecH--------HHHHHHHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCC------CcceeeC
Confidence 2445551 111110 00011111 122222211 011111111111 1278899
Q ss_pred CCCCEEEEeeccCCcceEEEEecC-------Cce-------eEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 302 GDGEWVIAGSASKGEHKIYIWDRA-------GYL-------VKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 302 ~dg~~l~~gs~~~~dg~I~iwd~~-------~~~-------~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
|||+|+++++.- +.++.|+++. +++ +...+ -.-.....+|.++|....|.-.|..|.-|++..
T Consensus 332 PDGkyi~v~GKL--sptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 332 SDGKYFIAAGKL--SPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp TTSCEEEEECTT--SSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCEEEEcCCC--CCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 999999888763 7889999986 111 22222 234567899999996666666799999999975
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.19 E-value=4 Score=43.42 Aligned_cols=190 Identities=13% Similarity=0.202 Sum_probs=107.6
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEE
Q 008844 23 HGVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDVLKGEKI 102 (551)
Q Consensus 23 ~~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~ 102 (551)
...|.++....+| .|..|+.+| +..||..+......... ....|.++.. .+| .|..++.+ -|..++..+++..
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~--~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETD--FPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCC--CCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccC--CCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE
Confidence 3568898887776 455566655 78999887654331111 1345777755 345 56666655 5888888766543
Q ss_pred EEEE-----c-CCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 008844 103 TRIV-----L-QQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTP 176 (551)
Q Consensus 103 ~~~~-----~-~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (551)
.+. . ...+..+.....+ .+.+ +.. +.+..++..++........... ......|
T Consensus 135 -~~~~~~~~l~~~~i~~i~~d~~g---~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~---------------~~~~~~i 193 (758)
T 3ott_A 135 -SFDTRRNGLPNNTIYSIIRTKDN---QIYV-GTY-NGLCRYIPSNGKFEGIPLPVHS---------------SQSNLFV 193 (758)
T ss_dssp -EECHHHHCCSCSCEEEEEECTTC---CEEE-EET-TEEEEEETTTTEEEEECCCCCT---------------TCSSCCE
T ss_pred -EeccCCCCcCCCeEEEEEEcCCC---CEEE-EeC-CCHhhCccCCCceEEecCCCcc---------------cccccee
Confidence 221 1 1223333333332 2333 333 4577777766654332211000 0011147
Q ss_pred eEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 177 TAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 177 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.++...+++..|.+|+. +.|..+|..+++...... .....|.++....+|.+.+ |+.+ -+.+++
T Consensus 194 ~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~ 257 (758)
T 3ott_A 194 NSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA-FHNNSIKSLALDGNGDLLA-GTDN-GLYVYH 257 (758)
T ss_dssp EEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE-EEEEEEEEEEECTTCCEEE-EETT-EEEEEC
T ss_pred EEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC-CCCCeEEEEEEcCCCCEEE-EeCC-ceeEEe
Confidence 78888877777777774 568899988776533221 2245688888877776544 4444 577777
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.19 E-value=2.3 Score=40.53 Aligned_cols=65 Identities=8% Similarity=0.164 Sum_probs=42.2
Q ss_pred CceEEEEee-------CCCEEEEEecCceEEEEECCCCcEEEeeec--cCccceEEEEEeeCCCEEEEee-CCCe
Q 008844 175 TPTAACFNK-------YGDLVYVGNSKGEILVIDHKSNQIRALVPV--SGAAVIKNIVFSRNGQYLLTNS-NDRT 239 (551)
Q Consensus 175 ~i~~~~~s~-------~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~t~s-~Dg~ 239 (551)
.+..++|.. +|.++++....+.|..+++..++....... .....+..|++.|+|.++++.. .+|.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 567777764 466677666778888888876654332211 2235789999999998666433 3443
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.21 E-value=2.3 Score=40.29 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=28.6
Q ss_pred CCCEEEEEeC-C---------CeEEEEeccCCceeeEeecc-cccccEEEEEecCCCCEEEEEeCC
Q 008844 34 RGTLLAAGCS-D---------GSCVIWDFETRGIAKELRDK-ECVAAITSVCWSKYGHRILVSAAD 88 (551)
Q Consensus 34 dg~~latg~~-d---------g~I~iwd~~~~~~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~s~d 88 (551)
++.+++.|+. + ..+.+||+.+......-... .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5677777765 2 46889999876543321111 0011122222 367777888754
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.16 Score=47.95 Aligned_cols=113 Identities=9% Similarity=0.076 Sum_probs=71.0
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeEeecccccccEEEEEec--C-CCCEEEEE-eCCCCEEEEEcCCCeEEEEEEcCCCe
Q 008844 36 TLLAAGCSDGSCVIWDFETRGIAKELRDKECVAAITSVCWS--K-YGHRILVS-AADKSLTLWDVLKGEKITRIVLQQTP 111 (551)
Q Consensus 36 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s--~-~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~ 111 (551)
.++++++.||.|.-+|..+|+....+... ...++....-. + ++..++.. +.||.|..++..+|.....+....-+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 46788899999999999999988888653 11233322110 1 22333333 57999999999888666555433211
Q ss_pred ----eEEEEecCC------CCCcEEEEeeCCCCcEEEEcCCCceeeec
Q 008844 112 ----LQARLHPGS------STPSLCLACPLSSAPMIVDLSTGSTSILP 149 (551)
Q Consensus 112 ----~~~~~~p~~------~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 149 (551)
....-.|-- .....+++++.++.+...|+.+|+.....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 111100100 01336889999999999999999977543
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.70 E-value=1.3 Score=49.68 Aligned_cols=178 Identities=13% Similarity=0.113 Sum_probs=91.6
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCC-ceeeEeeccc--ccccEEEEEecCCCCEEEEEeC-------CCCEEE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETR-GIAKELRDKE--CVAAITSVCWSKYGHRILVSAA-------DKSLTL 93 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~-~~~~~~~~~~--h~~~V~~l~~s~~g~~l~s~s~-------dg~i~v 93 (551)
..|.--.|-... .|+..+ +..|.-|++... .+.+.+.-|. -...|..-..+++.++++..|- .|.+.+
T Consensus 106 e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL 183 (1630)
T 1xi4_A 106 DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (1630)
T ss_pred CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence 445555554333 344333 457889988642 3333333221 1346777777888888775442 578888
Q ss_pred EEcCCCeEEEEEEcCCCeeEEEEecCCCCCcEEEEee----CCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCC
Q 008844 94 WDVLKGEKITRIVLQQTPLQARLHPGSSTPSLCLACP----LSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSD 169 (551)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
|.+..+. .+.+.+|.....-.-.++...+..+++.. ..+.++|.++........+.... .... .+..
T Consensus 184 yS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk--~~~~------~~~~ 254 (1630)
T 1xi4_A 184 YSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK--AVDV------FFPP 254 (1630)
T ss_pred eeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc--cccc------cCCc
Confidence 8876542 23333333322111112212222222221 12567777775431000000000 0000 0011
Q ss_pred CCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee
Q 008844 170 GTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP 212 (551)
Q Consensus 170 ~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~ 212 (551)
.....-+.++..++.-..++.-+.-|.|++||+.|+.++..-+
T Consensus 255 ~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred ccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 1112245678888888889999999999999999998866544
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.38 E-value=5.1 Score=42.14 Aligned_cols=193 Identities=10% Similarity=0.070 Sum_probs=100.9
Q ss_pred CCCCEEEEEeCC----CeEEEEeccCCceeeEe-e-----cccccccEEEEEecCCCCEEEEEeCC------CCEEEEEc
Q 008844 33 RRGTLLAAGCSD----GSCVIWDFETRGIAKEL-R-----DKECVAAITSVCWSKYGHRILVSAAD------KSLTLWDV 96 (551)
Q Consensus 33 ~dg~~latg~~d----g~I~iwd~~~~~~~~~~-~-----~~~h~~~V~~l~~s~~g~~l~s~s~d------g~i~vwd~ 96 (551)
.++.+++.|+.+ ..+.+||..++.....- . .......-.++.+..++.+++.|+.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467777888753 46889998887654433 1 01001112223332267777777753 35788998
Q ss_pred CCCeEEEEEEcCCC--eeEEEEecCCCCCcEEEEeeCCC--CcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQQT--PLQARLHPGSSTPSLCLACPLSS--APMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 97 ~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
.+......-..+.+ ...+....+ ..+++.++.++ .+.+||..+.....+..... .+. .
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~---~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~------~p~---------~ 537 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPD---GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE------FFQ---------N 537 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTT---SCEEEECCBCSSCSEEEEETTTTEEEECCCSSG------GGG---------S
T ss_pred CCCcEEECCCCCCCcccceEEEEcC---CEEEEECCCCCCCCEEEEECCCCceEEccCCCC------CCC---------c
Confidence 87654433222221 122222222 33666665544 68889988877655432100 000 0
Q ss_pred CCCceEEEEeeC-CCEEEEEec--C-----ceEEEEECCCCc------EEEeee--ccCccceEEEEEeeCCCEEEEeeC
Q 008844 173 PFTPTAACFNKY-GDLVYVGNS--K-----GEILVIDHKSNQ------IRALVP--VSGAAVIKNIVFSRNGQYLLTNSN 236 (551)
Q Consensus 173 ~~~i~~~~~s~~-g~~l~~g~~--d-----g~i~i~d~~~~~------~~~~~~--~~~~~~i~~l~~s~~g~~l~t~s~ 236 (551)
.....++++... +++++.|+. + ..+.+||+.+.. -..... ....... +++...++++++.|+.
T Consensus 538 r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 538 SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGT 616 (695)
T ss_dssp CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCB
T ss_pred ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCc
Confidence 012334566655 667777765 2 468999998877 222111 0111111 2333333777777774
Q ss_pred C--------CeEEEEe
Q 008844 237 D--------RTIRIYD 244 (551)
Q Consensus 237 D--------g~i~iwd 244 (551)
+ ..|.+||
T Consensus 617 ~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 617 SPSGLFDRTNSIISLD 632 (695)
T ss_dssp CSSCCCCTTTSEEEEE
T ss_pred cCCCCCCCCCeEEEEE
Confidence 3 4577887
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.82 E-value=9.6 Score=40.01 Aligned_cols=107 Identities=11% Similarity=0.151 Sum_probs=55.8
Q ss_pred EEEEeeCC----CCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEee-CCCEEEEEecC-----
Q 008844 125 LCLACPLS----SAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFNK-YGDLVYVGNSK----- 194 (551)
Q Consensus 125 ~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~g~~d----- 194 (551)
+++.++.+ ..+.+||..++....+....... ..+. +..-.+++..+ ++.+++.|+.+
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~---~~p~----------~R~~hs~~~~~~~~~lyv~GG~~~~~~~ 466 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS---EVPV----------ARMCHTFTTISRNNQLLLIGGRKAPHQG 466 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS---CCCC----------CCBSCEEEEETTTTEEEEECCBSSTTCB
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC---CCCc----------cccceEEEEEccCCEEEEEcCCCCCCCc
Confidence 55555532 45778888887765544111000 0000 00122333333 67777887753
Q ss_pred -ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCC--eEEEEe
Q 008844 195 -GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDR--TIRIYD 244 (551)
Q Consensus 195 -g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg--~i~iwd 244 (551)
..+.+||..+.+-...-.......-.+++...++++++.|+.++ .+.+||
T Consensus 467 ~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd 519 (695)
T 2zwa_A 467 LSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYN 519 (695)
T ss_dssp CCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEE
T ss_pred cccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEE
Confidence 35889999886543332112111112233324788888887654 678888
No 348
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.25 E-value=13 Score=39.08 Aligned_cols=195 Identities=11% Similarity=0.124 Sum_probs=95.2
Q ss_pred EEEE-EcCCCCEEEEEeCC-----CeEEEEeccCCceeeE-eeccccc-----ccEEEEEecCCCCEEEEEe--------
Q 008844 27 KCIA-FNRRGTLLAAGCSD-----GSCVIWDFETRGIAKE-LRDKECV-----AAITSVCWSKYGHRILVSA-------- 86 (551)
Q Consensus 27 ~~l~-fs~dg~~latg~~d-----g~I~iwd~~~~~~~~~-~~~~~h~-----~~V~~l~~s~~g~~l~s~s-------- 86 (551)
..+. ++|++++++.+-+. ..|+++|+.+++.+.. |...... .....++|..+..++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 3444 89999988865332 4699999999987632 2200000 0113447764444444321
Q ss_pred --CCCCEEEEEcCCCe--EEEEEEcCCC--eeEEEEecCCCCC--cEEEEeeCC---CCcEEEEcCCCceeeeccccCCC
Q 008844 87 --ADKSLTLWDVLKGE--KITRIVLQQT--PLQARLHPGSSTP--SLCLACPLS---SAPMIVDLSTGSTSILPIAVPDV 155 (551)
Q Consensus 87 --~dg~i~vwd~~~~~--~~~~~~~~~~--~~~~~~~p~~~~~--~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~ 155 (551)
....|+.|.+-+.. -...+..... ...+...+++... ..+++.+.+ ..+.+.+..........+....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS- 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT-
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC-
Confidence 13457788765432 2223333322 2233334443322 234433322 3345555543221111111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeeCCCEEEEE----------ecCceEEEEECCCCc--------EEEeeeccCcc
Q 008844 156 ANGIAPSSRNKYSDGTPPFTPTAACFNKYGDLVYVG----------NSKGEILVIDHKSNQ--------IRALVPVSGAA 217 (551)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~g----------~~dg~i~i~d~~~~~--------~~~~~~~~~~~ 217 (551)
. ..+..+..+.+++.. ...+.|.++++.+.. ....+......
T Consensus 291 -------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (711)
T 4hvt_A 291 -------------------D-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE 350 (711)
T ss_dssp -------------------T-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred -------------------c-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence 1 112344455544432 246789999987642 22224323456
Q ss_pred ceEEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 218 VIKNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 218 ~i~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
.+..+.|..+ .++++...++.-+|+
T Consensus 351 ~l~~~~~~~~-~l~~~~~~~~~~~l~ 375 (711)
T 4hvt_A 351 VFNFISTTKD-RVFLATYDNVVAKVV 375 (711)
T ss_dssp EEEEEEECSS-CEEEEEEETTEEEEE
T ss_pred eEEEEEEECC-EEEEEEEECCEEEEE
Confidence 7888888865 566677677764443
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.94 E-value=18 Score=38.28 Aligned_cols=198 Identities=11% Similarity=0.065 Sum_probs=108.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--eeeEeecc-----cccccEEEEEecCCCCEEEEEeCCCCEEEEEc
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRG--IAKELRDK-----ECVAAITSVCWSKYGHRILVSAADKSLTLWDV 96 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~--~~~~~~~~-----~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~ 96 (551)
..|.++....+|.+-+ |+.+| +..++..++. ....+... -....|.++.-..+|++ ..|+ ++-|..|+.
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEe-CCcHhhcCc
Confidence 4588888888887555 44555 6666655432 11222110 01246889888877764 4455 456999998
Q ss_pred CCCeEEEEEEcC-------CCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCC-----ceeeeccccCCCCCCCCCCCC
Q 008844 97 LKGEKITRIVLQ-------QTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTG-----STSILPIAVPDVANGIAPSSR 164 (551)
Q Consensus 97 ~~~~~~~~~~~~-------~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~ 164 (551)
.+++........ ..+.++.....+ .+..+...+.+.+++..+. .......... ..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g----~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~-------- 466 (758)
T 3ott_A 400 ATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG----QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS-VH-------- 466 (758)
T ss_dssp TTTEEEEEEEECCC--CBSSSEEEEEECTTS----EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC-GG--------
T ss_pred CCCcEEEeecCCCcCCCCCceEEEEEEcCCC----CEEEEECCCceEEEccccccccCCcceecccccc-cc--------
Confidence 877654322111 123333333322 4556666677888875431 1100000000 00
Q ss_pred CCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeec--cCccceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 165 NKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPV--SGAAVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
.......|.++...++|.+-+.++..+-|..+|..+++....... .....+.++....+|.+.+ |+..| |..
T Consensus 467 ----~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~G-l~~ 540 (758)
T 3ott_A 467 ----NGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHGG-VMR 540 (758)
T ss_dssp ----GTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETTE-EEE
T ss_pred ----cccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecCc-eEE
Confidence 000112588888888888665444445688999988766543211 1135678888887787554 44544 777
Q ss_pred Ee
Q 008844 243 YD 244 (551)
Q Consensus 243 wd 244 (551)
|+
T Consensus 541 ~~ 542 (758)
T 3ott_A 541 IN 542 (758)
T ss_dssp EC
T ss_pred Ee
Confidence 77
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.83 E-value=7.5 Score=35.48 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=29.1
Q ss_pred cceEEEEecC--CceeEEEecCCCceEEEEEecCCCeEEEEcCCCcEEEEecCC
Q 008844 316 EHKIYIWDRA--GYLVKILEGPKEALIDLAWHPVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 316 dg~I~iwd~~--~~~~~~l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iW~~~~ 367 (551)
+|.|+.|-.. +++-.... ....|..|+......++++ ||.|+.|-...
T Consensus 197 ~G~v~~wG~n~~gqlg~p~~-~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 197 DGKVIAWGDNRYKQTTVPTE-ALSGVSAIASGEWYSLALK---NGKVIAWGSSR 246 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGG-GGSSCCEEEECSSCEEEEE---TTEEEEESTTC
T ss_pred CCeEEEEECCCCCCCCCCcc-cCCCceEEEcCCCEEEEEE---CCEEEEecCCC
Confidence 7889999776 44321111 1235777776554434333 89999998654
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=78.18 E-value=6 Score=40.33 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=47.5
Q ss_pred CceEEEEeeCCCEEEEEecC------------ceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEe
Q 008844 175 TPTAACFNKYGDLVYVGNSK------------GEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~d------------g~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~ 234 (551)
.+-.|+|++.|+++++-..+ ..+.+.+..+++....+..+....++.++|+||++.|+++
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 56789999999977665432 3577778888888777766678899999999999988776
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.08 E-value=32 Score=33.86 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=22.0
Q ss_pred cceEEEEEeeCCC-EEEEeeCCCeEEEEe
Q 008844 217 AVIKNIVFSRNGQ-YLLTNSNDRTIRIYD 244 (551)
Q Consensus 217 ~~i~~l~~s~~g~-~l~t~s~Dg~i~iwd 244 (551)
..-..|+|.|+|. .|+++...|.|++++
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~ 42 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILT 42 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEe
Confidence 4457899999996 455666889999997
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=76.45 E-value=54 Score=31.19 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=34.7
Q ss_pred CceEEEEeeC-CCEEEEEecCceEEEEECCCCcEEEeeecc----C--------ccceEEEEEeeC-CCEEEEeeCCC
Q 008844 175 TPTAACFNKY-GDLVYVGNSKGEILVIDHKSNQIRALVPVS----G--------AAVIKNIVFSRN-GQYLLTNSNDR 238 (551)
Q Consensus 175 ~i~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~----~--------~~~i~~l~~s~~-g~~l~t~s~Dg 238 (551)
.+.++.++|. ...|+++...+.|...+-. ++....+... + ...+.+|++.|. ...|++++..+
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 5778889874 3556666655555544322 2222211100 0 134889999986 35666665544
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.70 E-value=42 Score=36.60 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=34.2
Q ss_pred CCCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee
Q 008844 173 PFTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP 212 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~ 212 (551)
...+.+++..++..++++-+.|++++||++.+++++....
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3467778888888999999999999999999999877653
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=72.98 E-value=13 Score=37.55 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=46.2
Q ss_pred CceEEEEeeCCCEEEEEec------------CceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEee
Q 008844 175 TPTAACFNKYGDLVYVGNS------------KGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNS 235 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~------------dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s 235 (551)
.+..|+|.++|.+.++... ...|..++..++++...+.......++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 6788999999987774432 226888888888876666434457799999999999888773
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=72.35 E-value=13 Score=37.83 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=44.3
Q ss_pred EEEEEEcCCCCEEEEEeCC------------CeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEe
Q 008844 26 MKCIAFNRRGTLLAAGCSD------------GSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSA 86 (551)
Q Consensus 26 V~~l~fs~dg~~latg~~d------------g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s 86 (551)
.--|+|+|.|++++.-..+ ..+.+.+..++++.+.+.+. ....++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEEE
Confidence 4668999999977654321 23566677778887777765 367899999999999887763
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=71.90 E-value=70 Score=30.42 Aligned_cols=201 Identities=8% Similarity=0.016 Sum_probs=102.2
Q ss_pred ceEEEEEEcCCCCEEEE--EeC-------------CCeEEEEeccCC--ceeeEeeccc----ccccEEEEEec---CC-
Q 008844 24 GVMKCIAFNRRGTLLAA--GCS-------------DGSCVIWDFETR--GIAKELRDKE----CVAAITSVCWS---KY- 78 (551)
Q Consensus 24 ~~V~~l~fs~dg~~lat--g~~-------------dg~I~iwd~~~~--~~~~~~~~~~----h~~~V~~l~~s---~~- 78 (551)
-.|..+...+++++-+. |.. --.|.+||+.++ ++++.+.... ....+..+.+. |.
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 45788888887765443 211 125889999999 9988876531 13457778776 22
Q ss_pred ---CCEEEEEe-CCCCEEEEEcCCCeEEEEEEc-------------------CCCeeEEEEecCCCCCcEEEEeeCCCCc
Q 008844 79 ---GHRILVSA-ADKSLTLWDVLKGEKITRIVL-------------------QQTPLQARLHPGSSTPSLCLACPLSSAP 135 (551)
Q Consensus 79 ---g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~-------------------~~~~~~~~~~p~~~~~~~~~~~~~~~~i 135 (551)
+.+++.+. ....|.|+|+.+++.-+.... ...+..++++|+.... ...+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~--------~~~L 238 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEG--------NRPA 238 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTS--------CCEE
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCC--------CeEE
Confidence 34555444 367899999999876654421 1123333444431110 1223
Q ss_pred EEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCCCCCceEEEEe-eCCCEEEEEecCceEEEEECCC-----CcEEE
Q 008844 136 MIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTPPFTPTAACFN-KYGDLVYVGNSKGEILVIDHKS-----NQIRA 209 (551)
Q Consensus 136 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~g~~dg~i~i~d~~~-----~~~~~ 209 (551)
++--+.+.....++......... ..................+++. .+|.++++--....|..|+..+ .....
T Consensus 239 Yf~plss~~ly~V~T~~L~~~~~--~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~ 316 (381)
T 3q6k_A 239 YYLAGSAIKVYSVNTKELKQKGG--KLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDV 316 (381)
T ss_dssp EEEESSCSEEEEEEHHHHSSTTC--CCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEE
T ss_pred EEEECCCCcEEEEEHHHhhCcch--hhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEE
Confidence 33333333333333222211110 0000000000001133456675 5677777777788999999876 12222
Q ss_pred eeeccCccceEEEEEeeCCCEEEEe
Q 008844 210 LVPVSGAAVIKNIVFSRNGQYLLTN 234 (551)
Q Consensus 210 ~~~~~~~~~i~~l~~s~~g~~l~t~ 234 (551)
......-.....+.+..+|.+.++.
T Consensus 317 l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 317 VYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEECCCccccCeEEECCCCeEEEEE
Confidence 2221222345666666666544433
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=70.15 E-value=1.1e+02 Score=31.99 Aligned_cols=30 Identities=7% Similarity=-0.175 Sum_probs=23.0
Q ss_pred EEeeCCCEEEEEecC-----ceEEEEECCCCcEEE
Q 008844 180 CFNKYGDLVYVGNSK-----GEILVIDHKSNQIRA 209 (551)
Q Consensus 180 ~~s~~g~~l~~g~~d-----g~i~i~d~~~~~~~~ 209 (551)
+++|++++++.+-+. ..|+++|+.+++.+.
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~ 170 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK 170 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC
Confidence 388999888776443 369999999998764
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=67.31 E-value=72 Score=28.77 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=33.2
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.|..++.... ..++. .+|.|+.|=....-.+. ++......|..|+..... .++. . ||.|..|-
T Consensus 181 ~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG 243 (282)
T 3qhy_B 181 GVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWG 243 (282)
T ss_dssp SEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEES
T ss_pred CeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCE-EEEE-E-CCEEEEec
Confidence 4555544332 22333 58999999765432211 111223456667654333 3333 3 99999996
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.45 E-value=37 Score=34.21 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=44.8
Q ss_pred ceEEEEEEcCCCCEEEEEeC------------CCeEEEEeccCCceeeEeecccccccEEEEEecCCCCEEEEEeC
Q 008844 24 GVMKCIAFNRRGTLLAAGCS------------DGSCVIWDFETRGIAKELRDKECVAAITSVCWSKYGHRILVSAA 87 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~------------dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~ 87 (551)
.....|+|.++|.+.++-.. ...|..++..++++...+... ....++.++|+||++.|+++-+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEEe
Confidence 45678999999987773321 125677777778776666542 1467899999999998888753
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=61.47 E-value=1.3e+02 Score=29.56 Aligned_cols=55 Identities=11% Similarity=-0.039 Sum_probs=34.3
Q ss_pred ceEEEEEEcCCCC-EEEEEeCCCeEEEEeccCCc---eeeEeec---c----cccccEEEEEecCC
Q 008844 24 GVMKCIAFNRRGT-LLAAGCSDGSCVIWDFETRG---IAKELRD---K----ECVAAITSVCWSKY 78 (551)
Q Consensus 24 ~~V~~l~fs~dg~-~latg~~dg~I~iwd~~~~~---~~~~~~~---~----~h~~~V~~l~~s~~ 78 (551)
.....|+|.|+|+ .|+++...|.|++++..... .+..+.. . ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999996 34445678999999754321 1222210 0 01356889999996
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.59 E-value=27 Score=39.03 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCceEEEEeeCCCEEEEEecCceEEEEECCCCcEEEeee
Q 008844 174 FTPTAACFNKYGDLVYVGNSKGEILVIDHKSNQIRALVP 212 (551)
Q Consensus 174 ~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~ 212 (551)
..+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 355667777888999999999999999999999987764
No 363
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=59.82 E-value=54 Score=24.75 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=25.3
Q ss_pred CCEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 185 GDLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 185 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
|.+.+.-..||.+.+|+...+..+..........-..+.+..+|.+++... ++.+ +|.
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~ 81 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFV 81 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEE
Confidence 444444455566666654323332222111111123456666666555432 3333 565
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=59.38 E-value=1.1e+02 Score=28.28 Aligned_cols=208 Identities=8% Similarity=-0.040 Sum_probs=101.8
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEe---ccC------CceeeEeecccccccEEEEEecC---CCCEEEEEeCCCCE
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWD---FET------RGIAKELRDKECVAAITSVCWSK---YGHRILVSAADKSL 91 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd---~~~------~~~~~~~~~~~h~~~V~~l~~s~---~g~~l~s~s~dg~i 91 (551)
..+..+........|+.-+..|.++-.. +.. |..+..+-.-.....|.++...+ +..+++.++.+|.|
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 3444444444445555556677655443 322 11111111111134555554333 47799999999999
Q ss_pred EEEEcCCCe-------EEEEEEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCC
Q 008844 92 TLWDVLKGE-------KITRIVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSR 164 (551)
Q Consensus 92 ~vwd~~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (551)
+--.+..-. ....+.....+..+..... ...++..+..|.+..+............. ..+.
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~---~d~ill~T~~G~~~rf~~~~~eip~~gr~----a~Gv----- 189 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSA---GDDLLLVSANGQSIRFSATDEALRPMGRA----TSGV----- 189 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECT---TCEEEEEETTSEEEEEECCTTTSCCCCTT----SBCE-----
T ss_pred EEeEHHHhhccccCceEEEEECCCCEEEEEEEecC---CCEEEEEECCCeEEEEECcccccCcCCcC----CCCe-----
Confidence 998765421 1112222223333333322 22566677777777766652111100000 0000
Q ss_pred CCCCCCCCCCCceEEEEeeCCCEEEEEecCceEEEEECCCC-------cEEEeeeccC-ccceEEEEEeeCCCEEEEeeC
Q 008844 165 NKYSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDHKSN-------QIRALVPVSG-AAVIKNIVFSRNGQYLLTNSN 236 (551)
Q Consensus 165 ~~~~~~~~~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~-------~~~~~~~~~~-~~~i~~l~~s~~g~~l~t~s~ 236 (551)
..........|.++...+.+.+++..+..|.++...+..- +-+..+.... .+.+..+........++..+.
T Consensus 190 -~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~ 268 (327)
T 3uc1_A 190 -QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTS 268 (327)
T ss_dssp -ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEG
T ss_pred -eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcC
Confidence 0000111225666666666678999999999988875321 2233332222 334554444444455666666
Q ss_pred CCeEEEEe
Q 008844 237 DRTIRIYD 244 (551)
Q Consensus 237 Dg~i~iwd 244 (551)
+|.+.-+.
T Consensus 269 ~G~~ir~~ 276 (327)
T 3uc1_A 269 GGGVIRTA 276 (327)
T ss_dssp GGCEEEEE
T ss_pred CCeEEEEe
Confidence 77666665
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=58.77 E-value=1.1e+02 Score=28.04 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=45.3
Q ss_pred CceEEEEeeCCCEEEEEecCceEEEEECCCC-------cEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 175 TPTAACFNKYGDLVYVGNSKGEILVIDHKSN-------QIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 175 ~i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~-------~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.+..+........++..+.+|.+..+....- +-+..+.......|..+....++..|++.+..|....+.
T Consensus 152 ~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 152 FVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 3444444444567888889999988876431 123333334456666666655666788888999988887
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.70 E-value=52 Score=34.21 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=31.8
Q ss_pred cEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC
Q 008844 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 69 ~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 108 (551)
.|.++.+ +..+|++-+.|+++++|++.++.++......
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 4666555 3679999999999999999999999888763
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.44 E-value=33 Score=38.34 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=33.6
Q ss_pred cEEEEEecCCCCEEEEEeCCCCEEEEEcCCCeEEEEEEcC
Q 008844 69 AITSVCWSKYGHRILVSAADKSLTLWDVLKGEKITRIVLQ 108 (551)
Q Consensus 69 ~V~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 108 (551)
.+.+++..++..+|++-+.|++++||++.++.++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4455566677889999999999999999999999987654
No 368
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=54.66 E-value=1.4e+02 Score=28.09 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=27.9
Q ss_pred eeEEcCC-CCEEEEeeccCCcceEEEEecCCceeEEEecCCCceEEEEEe
Q 008844 297 APCFSGD-GEWVIAGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWH 345 (551)
Q Consensus 297 ~~~~s~d-g~~l~~gs~~~~dg~I~iwd~~~~~~~~l~~h~~~v~~l~~s 345 (551)
.++++|. ...|++++. .+.|+.-.-.|.....+..+-..+.+|+|.
T Consensus 345 ~~~~~p~~~~~l~~g~~---~g~l~~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 345 AMTADAHAPVGVYFGTT---GGEIWASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp SEEECCSSSCCEEEECT---TSCEEEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EEEECCCCCCEEEEEeC---CCeEEEECCCCCCceEcccCCCCeeEEEEe
Confidence 5778874 355666665 455554333366666666555567787774
No 369
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=54.28 E-value=1.5e+02 Score=28.15 Aligned_cols=154 Identities=15% Similarity=0.102 Sum_probs=81.3
Q ss_pred eEEEEECCCC--cEEEeeeccC-----ccceEEEEEe---eC----CCEEE-EeeCCCeEEEEeCcCCccccchhhhhhh
Q 008844 196 EILVIDHKSN--QIRALVPVSG-----AAVIKNIVFS---RN----GQYLL-TNSNDRTIRIYDNLLPLKNGLEALVDIE 260 (551)
Q Consensus 196 ~i~i~d~~~~--~~~~~~~~~~-----~~~i~~l~~s---~~----g~~l~-t~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (551)
.|.+||+.+. +.+..+..+. ...+..+++. |. +.++. +-+..+-|.|+|+.... ..+.+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~--swRv~~~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD--SWNVTHPT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE--EEEEECGG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc--EEEEccCC-
Confidence 6889999999 8887775432 4568889988 22 23433 33346778899833221 11111100
Q ss_pred ccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCC----CCEEEEeeccCCcceEEEEecC----C---cee
Q 008844 261 KGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGD----GEWVIAGSASKGEHKIYIWDRA----G---YLV 329 (551)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~d----g~~l~~gs~~~~dg~I~iwd~~----~---~~~ 329 (551)
..+.....+... +..+. ....+ ..+++||+ +++|...... ...++-..+. . ..+
T Consensus 201 ---~~pd~~~~~~i~-G~~~~----~~~Gi-----~gIaLsp~~~~~~~~LYf~pls--s~~ly~V~T~~L~~~~~~~~v 265 (381)
T 3q6k_A 201 ---FKAERPTKFDYG-GKEYE----FKAGI-----FGITLGDRDSEGNRPAYYLAGS--AIKVYSVNTKELKQKGGKLNP 265 (381)
T ss_dssp ---GSCCSCEEEEET-TEEEE----ECCCE-----EEEEECCCCTTSCCEEEEEESS--CSEEEEEEHHHHSSTTCCCCC
T ss_pred ---CccccCcceEEC-CEEeE----eccCc-----eEEEecCCcCCCCeEEEEEECC--CCcEEEEEHHHhhCcchhhce
Confidence 011111111111 11111 11223 38899998 8888887762 1234444322 1 122
Q ss_pred EEEec--CCCceEEEEEe-cCCCeEEEEcCCCcEEEEecCC
Q 008844 330 KILEG--PKEALIDLAWH-PVHPIIVSVSLTGWVYIWAKDY 367 (551)
Q Consensus 330 ~~l~~--h~~~v~~l~~s-p~~~~l~s~s~dg~i~iW~~~~ 367 (551)
..+.. ....-..+++. .+|.++++--....|..|+..+
T Consensus 266 ~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 266 ELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 22221 11233456675 5677777777788899999765
No 370
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=53.40 E-value=4.2 Score=20.73 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=5.1
Q ss_pred cccCCchhhhhh
Q 008844 498 RKRKPSEKGLEL 509 (551)
Q Consensus 498 ~~~~~~~~~~~~ 509 (551)
|+|+++++++|-
T Consensus 3 rrrrprkrplew 14 (28)
T 3ukw_C 3 RRRRPRKRPLEW 14 (28)
T ss_dssp ----CCCCCCCC
T ss_pred cccccccCCccc
Confidence 556666666654
No 371
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=52.95 E-value=20 Score=37.17 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=31.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeEeec
Q 008844 24 GVMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRD 63 (551)
Q Consensus 24 ~~V~~l~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~ 63 (551)
..|.|+.+ +..+|++-+.|.++|+|++.+++++.+...
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35777666 367999999999999999999998877654
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=51.33 E-value=1.6e+02 Score=27.77 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=36.8
Q ss_pred CCCEEEEEecCceEEEEECCCC-c----------EEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 184 YGDLVYVGNSKGEILVIDHKSN-Q----------IRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 184 ~g~~l~~g~~dg~i~i~d~~~~-~----------~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
-..+.++-..+|.|+.|-.... + ....+.......+..++++....+.+.-..||.|..|-
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 3455666677888888864321 1 11112112233455566766666777778899999996
No 373
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.49 E-value=2.9e+02 Score=30.04 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.7
Q ss_pred cceEEEEEeeCCCEEEEeeCCCeEEEEeC
Q 008844 217 AVIKNIVFSRNGQYLLTNSNDRTIRIYDN 245 (551)
Q Consensus 217 ~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~ 245 (551)
..+.+++..++..+|++-+.|+++|+|++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl 264 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDL 264 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEET
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEEC
Confidence 35677778888889999999999999993
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=48.77 E-value=1.5e+02 Score=26.57 Aligned_cols=69 Identities=7% Similarity=0.036 Sum_probs=43.1
Q ss_pred ceEEEEeeCCCEEEEEecCceEEEEECCCC-------cEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 176 PTAACFNKYGDLVYVGNSKGEILVIDHKSN-------QIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 176 i~~~~~s~~g~~l~~g~~dg~i~i~d~~~~-------~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
+..+........|+..+..|.++.+....- .-+..+.......|..+...+++.+|+..+..|.++...
T Consensus 118 l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~ 193 (276)
T 3no0_A 118 VVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKIS 193 (276)
T ss_dssp EEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeE
Confidence 333334444557778888888887765321 112223334456676666666677888888999988887
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=43.21 E-value=1.8e+02 Score=25.98 Aligned_cols=153 Identities=10% Similarity=0.088 Sum_probs=80.8
Q ss_pred CCCEEEEEecCceEEEEECCCCc----EEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEeCcCCccccchhhhhh
Q 008844 184 YGDLVYVGNSKGEILVIDHKSNQ----IRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYDNLLPLKNGLEALVDI 259 (551)
Q Consensus 184 ~g~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (551)
+..+++..+.+|.|+...+..-. -...+.......+..+........|+..+..|.+..+.... +...
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e--------ip~~ 150 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE--------VPPS 150 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG--------SCBC
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh--------CCCc
Confidence 45789999999999998865431 12222223455666666665666788888999988887210 0000
Q ss_pred hccCCCCCcceeeeeccceeeeeecccccccceeeeeeeEEcCCCCEEEEeeccCCcceEEEEecC--------CceeEE
Q 008844 260 EKGIAEPNGIEKMKMVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIAGSASKGEHKIYIWDRA--------GYLVKI 331 (551)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~dg~~l~~gs~~~~dg~I~iwd~~--------~~~~~~ 331 (551)
.. . .. +.....+.. .+.+. .+...+++.+|+..+. .|.++...+. ++-+..
T Consensus 151 gR---~--------a~-Gv~~i~L~~-~d~vv-----~~~~~~~~~~ll~~T~---~G~~kr~~~~e~~~~~R~gkGv~~ 209 (276)
T 3no0_A 151 TP---G--------AR-GVQGIKLEK-NDETS-----GLRIWNGEPYLLVITA---KGRVKKISHEEIPKTNRGVKGTEV 209 (276)
T ss_dssp CT---T--------CC-CEECCCCCT-TCCEE-----EEEEESSCSEEEEEET---TSCEEEEEGGGSCCCCTTCCCEEC
T ss_pred CC---C--------CC-CEEEEccCC-CCEEE-----EEEEeCCCCEEEEEeC---CCcEEEeEHHHcccCCCCCcceEE
Confidence 00 0 00 111111211 12222 3333345667888887 7888887764 122222
Q ss_pred EecCCCceEEEEEecCCCeEEEEcCCCcEEE--EecC
Q 008844 332 LEGPKEALIDLAWHPVHPIIVSVSLTGWVYI--WAKD 366 (551)
Q Consensus 332 l~~h~~~v~~l~~sp~~~~l~s~s~dg~i~i--W~~~ 366 (551)
+ ...+.+..+........|+..+.+|.+.. +++.
T Consensus 210 i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 210 S-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp C-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred E-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 3 22344544433333345555666777666 6654
No 376
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=40.60 E-value=3e+02 Score=27.68 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=91.9
Q ss_pred eEEEEeccCCceeeEeecc------cccccEEEEEecCCCC-EEEEEeCCCC----------------------------
Q 008844 46 SCVIWDFETRGIAKELRDK------ECVAAITSVCWSKYGH-RILVSAADKS---------------------------- 90 (551)
Q Consensus 46 ~I~iwd~~~~~~~~~~~~~------~h~~~V~~l~~s~~g~-~l~s~s~dg~---------------------------- 90 (551)
.|.+|++. ++.+..+... .|-.++....|.-||+ -|+....+++
T Consensus 152 ~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEy 230 (591)
T 2zux_A 152 LIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEY 230 (591)
T ss_dssp EEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcE
Confidence 57777776 5555544321 1345677778877775 4555555665
Q ss_pred EEEEEcCCCeEEEEEEcCCC---e--------------eEEEEecCCCCCcEEEEeeCC--CCcEEEEcCCCceeee-cc
Q 008844 91 LTLWDVLKGEKITRIVLQQT---P--------------LQARLHPGSSTPSLCLACPLS--SAPMIVDLSTGSTSIL-PI 150 (551)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~---~--------------~~~~~~p~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~-~~ 150 (551)
|.|+|=.+|+.+..+..... + ......-++..+.++++-+.- ..+..||...++.... ..
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 88999889999888765311 1 111222344455555554333 3477888888765332 22
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeCC-CEEEEEecCceEEEEECCCCcEEEeeeccCccceEEEEEeeC--
Q 008844 151 AVPDVANGIAPSSRNKYSDGTPPFTPTAACFNKYG-DLVYVGNSKGEILVIDHKSNQIRALVPVSGAAVIKNIVFSRN-- 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~l~~s~~-- 227 (551)
........ ...+.....+....+.-|| .-|+.|+. ++| ..++.+......|...+....|.|+
T Consensus 311 d~~~~~~~--------~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~ 376 (591)
T 2zux_A 311 DSSKSGNE--------AFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRP 376 (591)
T ss_dssp ETTSTTCG--------GGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSS
T ss_pred cCCCCCcc--------cccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCC
Confidence 11111000 0000011144455555566 33444431 223 2344444444577777777777776
Q ss_pred CCEEEEeeCC
Q 008844 228 GQYLLTNSND 237 (551)
Q Consensus 228 g~~l~t~s~D 237 (551)
|..++.+..+
T Consensus 377 GlEv~~~~E~ 386 (591)
T 2zux_A 377 GLEVFQVHED 386 (591)
T ss_dssp SCEEEEECCC
T ss_pred CcEEEEEecC
Confidence 3345554443
No 377
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.25 E-value=2.2e+02 Score=25.86 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=43.6
Q ss_pred CceEEEEe---eCCCEEEEEecCceEEEEECCCC-----cEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 175 TPTAACFN---KYGDLVYVGNSKGEILVIDHKSN-----QIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 175 ~i~~~~~s---~~g~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.|.++..- .++.+++..+.+|.++...+..- .-+..+.......+..+........|+..+..|.+..+.
T Consensus 96 ~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~ 173 (307)
T 1zi0_A 96 RITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFK 173 (307)
T ss_dssp CEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEE
Confidence 45444332 34568999999999999876421 112222223335666665555556777888888887777
No 378
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=38.64 E-value=95 Score=30.77 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=45.1
Q ss_pred CceEEEEeeC----C--CEEEEEecCceEEEEECC-CCc-------EEEeeec-cCccceEEEEEeeCCCEEEEeeCCCe
Q 008844 175 TPTAACFNKY----G--DLVYVGNSKGEILVIDHK-SNQ-------IRALVPV-SGAAVIKNIVFSRNGQYLLTNSNDRT 239 (551)
Q Consensus 175 ~i~~~~~s~~----g--~~l~~g~~dg~i~i~d~~-~~~-------~~~~~~~-~~~~~i~~l~~s~~g~~l~t~s~Dg~ 239 (551)
..++++...- + ..++.|+.+|.|.=.-+. .+. .+..+.. ....+|..|.++++..+|++++..+.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4577766543 4 457889999987544332 221 1223332 24578999999999999999999887
Q ss_pred EEE
Q 008844 240 IRI 242 (551)
Q Consensus 240 i~i 242 (551)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 379
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=38.28 E-value=2.3e+02 Score=25.80 Aligned_cols=61 Identities=7% Similarity=0.126 Sum_probs=41.3
Q ss_pred CCCEEEEEecCceEEEEECCCC-----cEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 184 YGDLVYVGNSKGEILVIDHKSN-----QIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 184 ~g~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
...+|+..+..|.++...+..- .-+..+.......+..+........|+..+..|.+..+.
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~ 178 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFN 178 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 3567888899999998877432 112223334456666666665566788888999988887
No 380
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=35.36 E-value=60 Score=32.60 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=45.2
Q ss_pred CceEEEEeeCC--CEEEEEecCceEEEEECCCC----cEEEeeeccC-ccceE-EEEEeeCCCEEEEeeCCCeEEEE
Q 008844 175 TPTAACFNKYG--DLVYVGNSKGEILVIDHKSN----QIRALVPVSG-AAVIK-NIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 175 ~i~~~~~s~~g--~~l~~g~~dg~i~i~d~~~~----~~~~~~~~~~-~~~i~-~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
..++++....+ ..++.|+.+|.|.-..+... ..+..+.... ..+|. .|.+++++.+|++++..+.++|=
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kvp 477 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVP 477 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEeccccceee
Confidence 35556655544 45778999998865544322 1233333332 56775 89999999999999888776653
No 381
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=32.76 E-value=3e+02 Score=25.35 Aligned_cols=70 Identities=10% Similarity=0.022 Sum_probs=46.0
Q ss_pred CceEEEEee---CCCEEEEEecCceEEEEECCCCc-----EEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 175 TPTAACFNK---YGDLVYVGNSKGEILVIDHKSNQ-----IRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 175 ~i~~~~~s~---~g~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.|.++..-+ +..+++..+.+|.|+...+.... -+..+.......+..+........|+..+..|.+..+.
T Consensus 96 ~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 96 RIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 444444333 46799999999999998765422 12222223455666666665666788888899988887
No 382
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=31.59 E-value=3.3e+02 Score=25.57 Aligned_cols=61 Identities=5% Similarity=0.125 Sum_probs=40.5
Q ss_pred CCCEEEEEecCceEEEEECCCC-----cEEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 184 YGDLVYVGNSKGEILVIDHKSN-----QIRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 184 ~g~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.+.+|+.++..|.++...+... .-+..+.+.....+..+........|+..+..|.+..|.
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~ 177 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFG 177 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEE
Confidence 3568999999999998875421 112233323355566666655566788888888887776
No 383
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=28.10 E-value=1.8e+02 Score=21.50 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=6.1
Q ss_pred EEEeeCCCEEEE
Q 008844 222 IVFSRNGQYLLT 233 (551)
Q Consensus 222 l~~s~~g~~l~t 233 (551)
+.+..+|++++.
T Consensus 55 l~l~~dGNLVl~ 66 (110)
T 3a0c_A 55 LTLHNNGNLVIY 66 (110)
T ss_dssp EEECTTSCEEEE
T ss_pred EEEeCCCCEEEE
Confidence 445555554444
No 384
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=27.85 E-value=3.8e+02 Score=25.10 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=32.5
Q ss_pred CEEEEEecCceEEEEECCC-Cc----------EEEeeeccCccceEEEEEeeCCCEEEEeeCCCeEEEEe
Q 008844 186 DLVYVGNSKGEILVIDHKS-NQ----------IRALVPVSGAAVIKNIVFSRNGQYLLTNSNDRTIRIYD 244 (551)
Q Consensus 186 ~~l~~g~~dg~i~i~d~~~-~~----------~~~~~~~~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iwd 244 (551)
.+.++-+.+|.|+.|-... ++ ....+.......|..++......+.+.-..||.|..|-
T Consensus 169 ~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 169 AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence 4455555677777775432 10 11111112234566666644335666667899999996
No 385
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.01 E-value=17 Score=30.01 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=5.7
Q ss_pred cccCCchhhhhh
Q 008844 498 RKRKPSEKGLEL 509 (551)
Q Consensus 498 ~~~~~~~~~~~~ 509 (551)
|+|+-.+||-++
T Consensus 128 RrRr~YEKPSeK 139 (190)
T 3bbn_U 128 KRRRFFENTQDV 139 (190)
T ss_dssp SSCCCTTTTTTH
T ss_pred HHHHhccCHHHH
Confidence 444445555443
No 386
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=25.93 E-value=1.4e+02 Score=29.74 Aligned_cols=69 Identities=10% Similarity=0.234 Sum_probs=46.1
Q ss_pred CceEEEEeeCC--CEEEEEecCceEEEEECC-CC--cEEEeeeccCccce-EEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 175 TPTAACFNKYG--DLVYVGNSKGEILVIDHK-SN--QIRALVPVSGAAVI-KNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 175 ~i~~~~~s~~g--~~l~~g~~dg~i~i~d~~-~~--~~~~~~~~~~~~~i-~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
..+.++...-. ..++.|+.+|.|.-.-+. .. ..+..+......+| ..|.++++..+|++++..+.++|-
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 45666655433 456789999998654443 21 22333333455677 489999999999999998888775
No 387
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.33 E-value=1.4e+02 Score=29.43 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=43.1
Q ss_pred eEEEEEEcC----CC--CEEEEEeCCCeEEEEecc-CC-------ceeeEeecccccccEEEEEecCCCCEEEEEeCCCC
Q 008844 25 VMKCIAFNR----RG--TLLAAGCSDGSCVIWDFE-TR-------GIAKELRDKECVAAITSVCWSKYGHRILVSAADKS 90 (551)
Q Consensus 25 ~V~~l~fs~----dg--~~latg~~dg~I~iwd~~-~~-------~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~ 90 (551)
..++|+... ++ ..++.|+.+|.|.-.-+. .+ ..+..+.......+|..|.++++..+|++++..+.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 356666542 24 467788999987544332 21 12333433223578999999999999999987765
Q ss_pred EEE
Q 008844 91 LTL 93 (551)
Q Consensus 91 i~v 93 (551)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 388
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=23.93 E-value=2.2e+02 Score=20.99 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=5.9
Q ss_pred EEEeeCCCEEEE
Q 008844 222 IVFSRNGQYLLT 233 (551)
Q Consensus 222 l~~s~~g~~l~t 233 (551)
+.+..+|.+++.
T Consensus 54 l~l~~dGNLvl~ 65 (109)
T 3dzw_A 54 LSMQSDGNLVVY 65 (109)
T ss_dssp EEECTTSCEEEE
T ss_pred EEEeCCCCEEEE
Confidence 445555554443
No 389
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=23.49 E-value=4.6e+02 Score=24.56 Aligned_cols=157 Identities=9% Similarity=-0.034 Sum_probs=80.0
Q ss_pred cCCCCEEEEEeCCCeEEEEeccCC-------ceeeEeecccccccEEEEEecCCCCEEEEEeCCCCEEEEEc---C----
Q 008844 32 NRRGTLLAAGCSDGSCVIWDFETR-------GIAKELRDKECVAAITSVCWSKYGHRILVSAADKSLTLWDV---L---- 97 (551)
Q Consensus 32 s~dg~~latg~~dg~I~iwd~~~~-------~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~vwd~---~---- 97 (551)
-|+..++++.+.+|.|+--.+.+- +-+..+... ....+..+........|+..+..|.+.-+.. .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 367778999999999987654321 112222222 1345555555555566666666776654443 2
Q ss_pred --CCeEEEE---EEcCCCeeEEEEecCCCCCcEEEEeeCCCCcEEEEcCCCceeeeccccCCCCCCCCCCCCCCCCCCCC
Q 008844 98 --KGEKITR---IVLQQTPLQARLHPGSSTPSLCLACPLSSAPMIVDLSTGSTSILPIAVPDVANGIAPSSRNKYSDGTP 172 (551)
Q Consensus 98 --~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (551)
.|..+.. +.....+..+...........++.++..|.++...+..-.... ..+... .... .
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~--------~~G~~a-----i~L~-~ 148 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL--------ARGKIA-----INLD-E 148 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC--------TTCEES-----SCCC-T
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc--------CCceEE-----EEeC-C
Confidence 1222111 1222334444333221223467777888877777654322110 000000 0000 0
Q ss_pred CCCceEEEEeeCCCEEEEEecCceEEEEECC
Q 008844 173 PFTPTAACFNKYGDLVYVGNSKGEILVIDHK 203 (551)
Q Consensus 173 ~~~i~~~~~s~~g~~l~~g~~dg~i~i~d~~ 203 (551)
...+..+........|+..+..|.+..+...
T Consensus 149 ~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 149 GDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp TCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 1144445555556678888999998888764
No 390
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=23.16 E-value=1.3e+02 Score=30.04 Aligned_cols=69 Identities=9% Similarity=-0.024 Sum_probs=43.1
Q ss_pred eEEEEEEcCC--CCEEEEEeCCCeEEEEeccCC----ceeeEeecccccccEE-EEEecCCCCEEEEEeCCCCEEE
Q 008844 25 VMKCIAFNRR--GTLLAAGCSDGSCVIWDFETR----GIAKELRDKECVAAIT-SVCWSKYGHRILVSAADKSLTL 93 (551)
Q Consensus 25 ~V~~l~fs~d--g~~latg~~dg~I~iwd~~~~----~~~~~~~~~~h~~~V~-~l~~s~~g~~l~s~s~dg~i~v 93 (551)
..++|+.... -..++.|+.+|.|.-..+... ..+..+.......+|. .|.++++..+|++++..+.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3566665543 346778999998765555432 1333443332246785 8999999899998876554433
No 391
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=23.03 E-value=2.3e+02 Score=29.24 Aligned_cols=56 Identities=18% Similarity=0.342 Sum_probs=0.0
Q ss_pred EEEEEecCceEE-EEECCCCc-------EEEeeec-cCccceEEEEEeeCCCEEEEeeCCCeEEE
Q 008844 187 LVYVGNSKGEIL-VIDHKSNQ-------IRALVPV-SGAAVIKNIVFSRNGQYLLTNSNDRTIRI 242 (551)
Q Consensus 187 ~l~~g~~dg~i~-i~d~~~~~-------~~~~~~~-~~~~~i~~l~~s~~g~~l~t~s~Dg~i~i 242 (551)
.++.|+.+|.|. +.-..... .+..+.. ....+|..|.++++..+|++++..+.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
No 392
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=22.50 E-value=2.5e+02 Score=21.15 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=3.6
Q ss_pred EEeeCCCEE
Q 008844 223 VFSRNGQYL 231 (551)
Q Consensus 223 ~~s~~g~~l 231 (551)
.+..+|.++
T Consensus 66 ~l~~dGNLV 74 (119)
T 1b2p_A 66 VLQPDGVLV 74 (119)
T ss_dssp EECTTSCEE
T ss_pred EEccCCEEE
Confidence 333444433
No 393
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=20.74 E-value=2.6e+02 Score=20.66 Aligned_cols=12 Identities=8% Similarity=0.531 Sum_probs=5.5
Q ss_pred EEEeeCCCEEEE
Q 008844 222 IVFSRNGQYLLT 233 (551)
Q Consensus 222 l~~s~~g~~l~t 233 (551)
+.+..+|.+++.
T Consensus 58 l~l~~dGNLvl~ 69 (110)
T 3r0e_B 58 LRLNHKGELIIK 69 (110)
T ss_dssp EEECTTSCEEEE
T ss_pred EEEeCCCcEEEE
Confidence 444445544443
No 394
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.48 E-value=2.4e+02 Score=28.49 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=39.5
Q ss_pred CEEEEEecCceEEEEECC-CC----cE-EEeeec-cCccceEEEEEeeCCCEEEEeeCCCeEEEE
Q 008844 186 DLVYVGNSKGEILVIDHK-SN----QI-RALVPV-SGAAVIKNIVFSRNGQYLLTNSNDRTIRIY 243 (551)
Q Consensus 186 ~~l~~g~~dg~i~i~d~~-~~----~~-~~~~~~-~~~~~i~~l~~s~~g~~l~t~s~Dg~i~iw 243 (551)
..++.|+.+|.|.-.-+. .+ .. +..+.. ....+|..|.++++..+|++++..+.++|-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 467789999987644332 22 11 222221 345789999999999999999888877765
Done!