BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008845
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 324 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 383
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E+ ++ EV+ IS D
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWD 72
Query: 384 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 73 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 132
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
+ L SL GK + YFSASWC PC+ FTP L + Y + + +FEV+ +S DE E FK Y
Sbjct: 22 IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDY 81
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGY 129
++KMPWLA+PF D + + L F V IP LV + D + + ++++ + +
Sbjct: 82 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDF 141
Query: 130 PF 131
P+
Sbjct: 142 PW 143
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 164 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 223
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 72
Query: 224 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 281
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 73 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 131
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+++ F GY
Sbjct: 21 VEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGY 80
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 114
F+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 81 FAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 327 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 387 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 171 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 230
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 231 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 280
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+++ F GY
Sbjct: 20 VEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGY 79
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 114
F+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 80 FAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 123
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 327 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 15 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 73
Query: 387 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 74 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 130
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 171 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 230
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 19 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 77
Query: 231 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 280
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 78 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 128
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 324 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 383
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E+ ++ EV+ IS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWD 74
Query: 384 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 134
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
+ L SL GK + YFSASWC PC+ FTP L + Y + + +FEV+ +S DE E FK Y
Sbjct: 24 IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDY 83
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGY 129
++KMPWLA+PF D + + L F V IP LV + D + + ++++ + +
Sbjct: 84 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDF 143
Query: 130 PF 131
P+
Sbjct: 144 PW 145
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 164 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 223
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 74
Query: 224 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 281
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 324 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 383
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E+ ++ EV+ IS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71
Query: 384 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
+ L SL GK + YFSASWC PC+ FTP L + Y + + +FEV+ +S DE E FK Y
Sbjct: 21 IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDY 80
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGY 129
++KMPWLA+PF D + + L F V IP LV + D + + ++++ + +
Sbjct: 81 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDF 140
Query: 130 PF 131
P+
Sbjct: 141 PW 142
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 164 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 223
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 71
Query: 224 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 281
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+++ F GY
Sbjct: 21 VEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGY 80
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 114
F+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 81 FAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 327 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 387 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 171 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 230
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 231 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 280
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia
Fasciculata
Length = 146
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+++ F GY
Sbjct: 21 VEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGY 80
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 114
F+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 81 FAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 327 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 387 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 171 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 230
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 231 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 280
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 324 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 383
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E +++ EV+ IS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAE-SKNFEVMLISWD 74
Query: 384 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 134
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
+ L SL GK + YFSASWC PC+ FTP L + Y + +FEV+ +S DE E FK Y
Sbjct: 24 IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEVMLISWDESAEDFKDY 83
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGY 129
++KMPWLA+PF D + + L F V IP LV + D + + ++++ + +
Sbjct: 84 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDF 143
Query: 130 PF 131
P+
Sbjct: 144 PW 145
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 164 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 223
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAESKNFEVMLISWD 74
Query: 224 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 281
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
Protein From Arabidopsis Thaliana
Length = 89
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 445 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHE-HELVLDRCGVYSCDGCDEEGRVW 503
G+ TEER+KEI+ +Y+E+AK WP+ VKH LHE HEL L R VY+CD C+EEG +W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 504 AFSCDECDFCLHPNCALGED 523
++ CDECDF LH CAL ED
Sbjct: 61 SYHCDECDFDLHAKCALNED 80
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
V++ SL GK + YFSASWC P + FTP L E Y++ +FEV+F + DE+++ F GY
Sbjct: 21 VEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGY 80
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 114
F+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 81 FAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 327 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
+ G+V V LAGK + YFSA WCPP R F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 387 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Query: 171 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 230
++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 231 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 280
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 324 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 383
V+ + + LAGKT+ YFSA WCPP RAF P+LID YK E+ ++ EV+ IS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71
Query: 384 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 441
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
+ L SL GK + YFSASWC P + FTP L + Y + + +FEV+ +S DE E FK Y
Sbjct: 21 IALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDY 80
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGY 129
++KMPWLA+PF D + + L F V IP LV + D + + ++++ + +
Sbjct: 81 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDF 140
Query: 130 PF 131
P+
Sbjct: 141 PW 142
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 164 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 223
V+ I++ L GKT+ YFS S S FTP+L++ Y K + ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFY-KAHAEKKNFEVMLISWD 71
Query: 224 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 281
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
V L SL GK + LYFSASWC PC+ FTP+LAE Y + +FEV+ +S DE++ F Y
Sbjct: 21 VSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDY 80
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 109
+ KMPWLA+PF T +L + F V IP L+ ++ +
Sbjct: 81 YGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINAD 118
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 330 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 389
G+V + L GKT+ LYFSA WCPPCR F P L + Y+K ++ EVV IS D +++ F
Sbjct: 19 GEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDF 77
Query: 390 DEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAIGP-SGRTITKEARDMI 441
+++ MPWLALPF S L + F V IP L+ I +G I +AR +
Sbjct: 78 HDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Query: 167 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 226
S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLIS D+ E
Sbjct: 16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENE 74
Query: 227 ESFKRDLGSMPWLALPFKDKSR-EKLARYFELSTLPTLVIIGPDGKTLHSNVAEA--IEE 283
F G MPWLALPF +S +L + F + ++PTL+ I D + A IE+
Sbjct: 75 SDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134
Query: 284 HGVGAFPF 291
FP+
Sbjct: 135 PDGANFPW 142
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 327 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
K + L+GKT+ YFSA WCPPCR F P+L++ Y+K + +++ E++ S D ++
Sbjct: 36 KQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHD-SKNFEIILASWDEEE 94
Query: 387 TSFDEFFKGMPWLALPFGDARKA-SLSRKFKVSGIPMLVAIGP-SGRTITKEARDMIAVH 444
F+ ++ MPWL++PF + +L++K+ V IP L+ + +G T+T AR +
Sbjct: 95 DDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQD 154
Query: 445 G-AEAYPFTEE 454
E +P+ +E
Sbjct: 155 PMGEQFPWRDE 165
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 2 EIMKIYELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 60
E +K+ + +DSL GK + YFSASWC PC+ FTP L E Y + +FE+I S
Sbjct: 30 EALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILAS 89
Query: 61 GDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 109
DE+++ F Y++KMPWL++PF++ + L + + V IP L+ L+ +
Sbjct: 90 WDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNAD 138
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 174 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 233
+ L GKT+ YFS S FTP+LVE YEK ++FEI+L S D+EE+ F
Sbjct: 43 MDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK-HHDSKNFEIILASWDEEEDDFNAYY 101
Query: 234 GSMPWLALPFKDKS-REKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIEEHGVG-AFP 290
MPWL++PF +++ E L + + + ++PTL+ + D G T+ + A+ + +G FP
Sbjct: 102 AKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFP 161
Query: 291 FTPE 294
+ E
Sbjct: 162 WRDE 165
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 324 VVGKNGGKVPVSD-LAGKTIL-LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 381
+V KN +V ++ L K I+ YFSAHWCPPCR F P L D Y ++ + + E++F+S
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 382 SDRDQTSFDEFFKGM-----PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 436
SDR + D+ F+ M WLA+P+ ++++ K+ ++GIP LV + G I+
Sbjct: 69 SDRSE---DDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMN 125
Query: 437 ARDMIAVHGAEAY 449
R + G A+
Sbjct: 126 GRGEVQSLGPRAF 138
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 16 DSLKGK--IGLYFSASWCGPCQRFTPILAEVYNEL-SRQGDFEVIFVSGDEDDEAFKGYF 72
++LK K IG YFSA WC PC+ FTPILA++Y+EL FE+IFVS D ++ Y
Sbjct: 21 EALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYM 80
Query: 73 --SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGY 129
S WLA+P+ S + + + GIP LVI+ ++G ++S G ++ G +
Sbjct: 81 MESHGDWLAIPYR-SGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 182 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLGSM-PWL 239
IG YFS FTP L ++Y +L FEI+ +S D E++ F+ + S WL
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL 88
Query: 240 ALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF 289
A+P++ + + ++ +P LVI+ DG + N ++ G AF
Sbjct: 89 AIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 387
NG ++ +SDL GK + L F WC PC+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 388 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 12 RVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 70
R++L LKGK + L F +WC PC++ P +A Y QG E++ V+ E A
Sbjct: 18 RIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQG-VEIVAVNVGESKIAVHN 76
Query: 71 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 113
F K + P R LD + V +P +++ GKV+
Sbjct: 77 -FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 158 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 216
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQG--VE 61
Query: 217 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 273
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 387
NG ++ +SDL GK + L F WC PC+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 388 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 12 RVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 70
R++L LKGK + L F +WC PC++ P +A Y QG E++ V+ E A
Sbjct: 18 RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG-VEIVAVNVGESKIAVHN 76
Query: 71 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 113
F K + P R LD + V +P +++ GKV+
Sbjct: 77 -FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 158 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 216
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VE 61
Query: 217 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 273
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 387
NG ++ +SDL GK + L F WCP C+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 388 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 158 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 216
S + +FV+ ++G++I +SDL+GK + L F + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQG--VE 61
Query: 217 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 273
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 12 RVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 70
R++L LKGK + L F +WC C++ P +A Y QG E++ V+ E A
Sbjct: 18 RIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQG-VEIVAVNVGESKIAVHN 76
Query: 71 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 113
F K + P R LD + V +P +++ GKV+
Sbjct: 77 -FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 12 RVKLDSLKGKI-GLYFSASWCGPCQRFTPIL-AEVYNELSRQGDFEVIFVSGDEDDEAFK 69
+V L SL+GK+ L F+ASWCG C++ P + +++ + DF +I + DE E
Sbjct: 25 QVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVL 84
Query: 70 GYFSKMPWLAVPFSDSETRDKLDEL-FKVMGIPHLVILDENGKVLSDGGVEIIREYGVEG 128
F+K + P D + + GI V++D GK+ V++ R Y E
Sbjct: 85 A-FAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKI-----VKLTRLYNEEE 138
Query: 129 YPFTVERIKEM 139
+ V++I EM
Sbjct: 139 FASLVQQINEM 149
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 322 DFVVGKNGGK-VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 380
DF + GK V +S L GK ++L F+A WC CR +P I+ +K ++ + + I
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMP-FIEKDIWLKHKDNA-DFALI 72
Query: 381 SSDRDQTSFDEF-FKGMPWLALPFGDARKASLSRKFKV--SGIPMLVAIGPSGRTITKEA 437
DRD+ F + P G A + K+ + +GI V I G+ I K
Sbjct: 73 GIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGK-IVKLT 131
Query: 438 RDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 468
R + EE + Q NEM K
Sbjct: 132 R-----------LYNEEEFASLVQQINEMLK 151
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
V L LKGK I + A+WCGPC+ P L E+ + + + D + +S D++ +A++
Sbjct: 23 VSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKAWENM 81
Query: 72 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 114
+K + R +D + + GIP ++LD +GK++S
Sbjct: 82 VTKDQLKGIQLHMGTDRTFMDA-YLINGIPRFILLDRDGKIIS 123
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI--SSDRD 385
NG V ++DL GK I + A WC PCR LP L K+++E+ ++ F+ S D++
Sbjct: 19 NGKTVSLADLKGKYIYIDVWATWCGPCRGELPAL----KELEEKYAGKDIHFVSLSCDKN 74
Query: 386 QTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 434
+ +++ + + L G R + + ++GIP + + G+ I+
Sbjct: 75 KKAWENMVTKDQLKGIQLHMGTDR--TFMDAYLINGIPRFILLDRDGKIIS 123
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 151 SLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG 210
SLRS S + +G+ +S++DL+GK I + + P L E+ EK G
Sbjct: 2 SLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAG 61
Query: 211 KGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 270
K F V +S D +++++ + + + + ++ +P +++ DG
Sbjct: 62 KDIHF--VSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDG 119
Query: 271 KTLHSNVAEAIEEHGVGAFPFTPEKF 296
K + +N+ + P T EKF
Sbjct: 120 KIISANMTRPSD-------PKTAEKF 138
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 13 VKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
V L+ KGK L F + C C++ TP L + YN +G F + VS D +E +K
Sbjct: 22 VSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG-FTIYGVSTDRREEDWKKA 80
Query: 72 F--SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 114
K W V + +D L E + ++G PH++++D GK+++
Sbjct: 81 IEEDKSYWNQVLLQKDDVKDVL-ESYCIVGFPHIILVDPEGKIVA 124
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 329 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 388
G V ++D GK +L+ F C CR P L+ Y K++ + +S+DR +
Sbjct: 19 GNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTIYGVSTDRREED 76
Query: 389 FDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 438
+ + + W + + + + G P ++ + P G+ + KE R
Sbjct: 77 WKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR 128
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 169 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 228
G S++DL+GK + + F++ + SA L E+Y K +G FEI ISLD +E
Sbjct: 25 GNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHF 82
Query: 229 FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVII 266
+K ++PW+ + + + + ++ LP++ ++
Sbjct: 83 WKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLV 120
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 15 LDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 73
L LKGK+ L F+ L E+YN+ + QG FE+ +S D D+ +K
Sbjct: 30 LTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG-FEIYQISLDGDEHFWKTSAD 88
Query: 74 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 116
+PW+ V ++ + L+ V +P + +++ N ++ + G
Sbjct: 89 NLPWVCVRDANGAYSSYI-SLYNVTNLPSVFLVNRNNELSARG 130
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 387
NG ++ +SDL GK + L F WC C+ P + + YK K ++ +E+V ++ +
Sbjct: 12 NGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 69
Query: 388 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433
+ F K + P + + VS +P I P G+ +
Sbjct: 70 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 114
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 158 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 216
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 1 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQG--VE 58
Query: 217 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 273
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 59 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 114
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 12 RVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 70
R++L LKGK + L F +WC C++ P +A Y QG E++ V+ E A
Sbjct: 15 RIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQG-VEIVAVNVGESKIAVHN 73
Query: 71 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 113
F K + P R LD + V +P +++ GKV+
Sbjct: 74 -FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 114
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 387
NG ++ +SDL GK + L F WC P + P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 388 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 158 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 216
S + +FV+ ++G++I +SDL+GK + L F + + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQG--VE 61
Query: 217 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 273
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 12 RVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 70
R++L LKGK + L F +WC P ++ P +A Y QG E++ V+ E A
Sbjct: 18 RIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQG-VEIVAVNVGESKIAVHN 76
Query: 71 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 113
F K + P R LD + V +P +++ GKV+
Sbjct: 77 -FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 387
NG ++ +SDL GK + L F W PC+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 388 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 158 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 216
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQG--VE 61
Query: 217 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 273
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 12 RVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 70
R++L LKGK + L F +W PC++ P +A Y QG E++ V+ E A
Sbjct: 18 RIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQG-VEIVAVNVGESKIAVHN 76
Query: 71 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 113
F K + P R LD + V +P +++ GKV+
Sbjct: 77 -FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 387
NG ++ +SDL GK + L F WC PC+ P + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 388 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGP 428
+ F K + P + + VS +P I P
Sbjct: 73 AVHNFXKSY-GVNFPVVLDTDRQVLDAYDVSPLPTTFLINP 112
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 12 RVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 70
R++L LKGK + L F +WC PC++ P A Y QG E++ V+ E A
Sbjct: 18 RIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQG-VEIVAVNVGESKIAVHN 76
Query: 71 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD 107
F K + P R LD + V +P +++
Sbjct: 77 -FXKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLIN 111
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 158 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 216
S + +FV+ ++G++I +SDL+GK + L F + + + P Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQG--VE 61
Query: 217 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPD 269
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+
Sbjct: 62 IVAVNVGESKIAVHNFXKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPE 113
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 334 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEF 392
+SD GKT+L+ A WC PCR +P L + K+ N EVV I+ D RD F
Sbjct: 55 LSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTF 112
Query: 393 FKGMPWLALPFGDARKASLSRKFKVS----GIPMLVAIGPSG 430
K L + + +KA + + K G+P V + P G
Sbjct: 113 LKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQG 154
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 14 KLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 72
KL +GK L A+WC PC++ P L E+ +LS +FEV+ ++ D D F
Sbjct: 54 KLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTF 112
Query: 73 SKMPWLAVP--FSDSETR--DKLDELFKVMGIPHLVILDENG 110
K L F+D + + L + + +G+P V++D G
Sbjct: 113 LKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQG 154
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 387
NG ++ +SDL GK + L F W P + P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 388 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 158 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 216
S + +FV+ ++G++I +SDL+GK + L F + + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQG--VE 61
Query: 217 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 273
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 13 VKLDSLKGKI-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
VKL G + L F ASWCGPC++ P + + +G F+V+ V+ D +
Sbjct: 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKG-FQVVAVNLDAKTGDAXKF 79
Query: 72 FSKMPW-LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 113
+++P V F + + + L+ V G P ++D NGKVL
Sbjct: 80 LAQVPAEFTVAF---DPKGQTPRLYGVKGXPTSFLIDRNGKVL 119
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 322 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 381
DF + G V +SD G + L F A WC PCR P K K + +VV ++
Sbjct: 11 DFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAK--GFQVVAVN 68
Query: 382 SDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 435
D +F +P K R + V G P I +G+ + +
Sbjct: 69 LDAKTGDAXKFLAQVP-AEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQ 121
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 322 DFVVGK-NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 380
DF + NG V +SDL G+ +++ F A WCPPCR +P + + +
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPS--XXRLNAAXAGKPFRXLCV 67
Query: 381 SSDR-DQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 435
S D + + +EFF+ + DA K + + + +G+P I G + K
Sbjct: 68 SIDEGGKVAVEEFFRKTGFTLPVLLDADK-RVGKLYGTTGVPETFVIDRHGVILKK 122
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 13 VKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE-AFKG 70
VKL LKG++ + F A+WC PC+ P + N F + VS DE + A +
Sbjct: 21 VKLSDLKGQVVIVNFWATWCPPCREEIPSXXRL-NAAXAGKPFRXLCVSIDEGGKVAVEE 79
Query: 71 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 113
+F K + D++ R + +L+ G+P ++D +G +L
Sbjct: 80 FFRKTGFTLPVLLDADKR--VGKLYGTTGVPETFVIDRHGVIL 120
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV-FISSDRDQTSFDEFFKGMP 397
G+ +L+F WCPPC+ LP+ Y + L V ++S+++Q ++F K
Sbjct: 34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANK 93
Query: 398 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 457
L P K L +++ + IP + G + + P T E++K
Sbjct: 94 -LTFPIVLDSKGELXKEYHIITIPTSFLLNEKGE-----------IEKTKIGPXTAEQLK 141
Query: 458 E 458
E
Sbjct: 142 E 142
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 21 KIGLYFSASWCGPCQRFTPILAEVYN-ELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLA 79
K L+F SWC PC++ P Y+ S + + E ++ F K L
Sbjct: 36 KTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLT 95
Query: 80 VPFSDSETRDKLDELFKVMGIPHLVILDENGKV 112
P +++ +L + + ++ IP +L+E G++
Sbjct: 96 FPIV-LDSKGELXKEYHIITIPTSFLLNEKGEI 127
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 324 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS- 382
++G +G +SD GK + L F A WC C A LP D + KE + V+ + S
Sbjct: 7 LMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLP---DTDEIAKEAGDDYVVLTVVSP 63
Query: 383 ----DRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433
++ + F ++KG+ + LP L + V P I G+ +
Sbjct: 64 GHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLV 118
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 38/123 (30%)
Query: 14 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV-----SGDEDDEA 67
+L KGK + L F ASWC C P E+ E D+ V+ V G++ +
Sbjct: 16 RLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVVSPGHKGEQSEAD 73
Query: 68 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVE 127
FK ++ + + +P V++D +GK+L YGV
Sbjct: 74 FKNWYKGLDYKNLP----------------------VLVDPSGKLL--------ETYGVR 103
Query: 128 GYP 130
YP
Sbjct: 104 SYP 106
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
+ +YF ASWCGPCQ +P++ N S + +V+ + D + K Y
Sbjct: 28 VLVYFWASWCGPCQLMSPLINLAANTYSDR--LKVVKLEIDPNPTTVKKY 75
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGM 396
A + +L+YF A WC PC+ P + A +R L+VV + D + T+ ++ +G+
Sbjct: 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNPTTVKKYKVEGV 80
Query: 397 PWLALPFGD 405
P L L G+
Sbjct: 81 PALRLVKGE 89
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 1 MEIMKIYELLLRVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 60
M I+K+ + K++S G + F A+WCGPC+ P+L E+ + +G +++ +
Sbjct: 4 MAIVKVTDADFDSKVES--GVQLVDFWATWCGPCKMIAPVLEELAAD--YEGKADILKLD 59
Query: 61 GDEDDEAFKGY-FSKMPWLAVPFSDSETRDKL 91
DE+ Y +P L V F D + DK+
Sbjct: 60 VDENPSTAAKYEVMSIPTLIV-FKDGQPVDKV 90
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER 371
+G + L GK ++ F A WCPPCR+ +P + K R
Sbjct: 23 DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASR 66
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 17 SLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 75
SLKGK + F A+WC PC+ P +V + +G F + ++ +E K Y K
Sbjct: 31 SLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASRG-FTFVGIAVNEQLPNVKNY-XKT 88
Query: 76 PWLAVPFSDSETRDKLDELFK------VMGIPHLVILDENGKV 112
+ P + +L F + GIP ++D +G V
Sbjct: 89 QGIIYPVXXATP--ELIRAFNGYIDGGITGIPTSFVIDASGNV 129
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
Length = 222
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 20 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 31 GAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 73
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 312 LESVLVSGDLDFVVGK-----NGGKVPVSDLAG-KTILLYFSAHWCPPCRAFLPKLIDAY 365
LE L + +++ +VGK P+ AG K ++L WC PC+A PK Y
Sbjct: 4 LELALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPK----Y 59
Query: 366 KKIKERNESLEVVFISSDRDQ 386
+K+ E E L+V+F+ D +Q
Sbjct: 60 EKLAE--EYLDVIFLKLDCNQ 78
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILEEIADEY--QGKLTVAKLNIDQN 63
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCEMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 16 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 64
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKMP 76
F A+WCGPC+ P+ + ELS + ++ IFV D D + A K S MP
Sbjct: 31 FFATWCGPCKTIAPL----FKELSEK--YDAIFVKVDVDKLEETARKYNISAMP 78
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 37/108 (34%)
Query: 319 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 378
GDL+ ++ ++ K+ V D F A WC PC+ P KE +E + +
Sbjct: 13 GDLESLLEQHKNKLVVVD---------FFATWCGPCKTIAPLF-------KELSEKYDAI 56
Query: 379 FISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAI 426
F+ D D+ +RK+ +S +P +AI
Sbjct: 57 FVKVDVDKLE---------------------ETARKYNISAMPTFIAI 83
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 333 PVSDLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
P+ AG K ++L WC PC+A PK Y+K+ E E L+V+F+ D +Q
Sbjct: 18 PIVKAAGDKPVVLDMFTQWCGPCKAMAPK----YEKLAE--EYLDVIFLKLDCNQ 66
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 20 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
G I + F A WCGPC+ PIL E+ +E QG V ++ D++
Sbjct: 21 GAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 387
+G V +DL GK L+ F CP C + +PK+I K +N +V+ ++ D
Sbjct: 17 HGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPI 74
Query: 388 -SFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433
S ++ K G+P+ + DA KA + + F P V IG G +
Sbjct: 75 ESVRQYVKDYGLPFTVMY--DADKA-VGQAFGTQVYPTSVLIGKKGEIL 120
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 169 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE-- 226
G+ +S +DL+GK + F S P++++ K K V +D E
Sbjct: 18 GKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESV 77
Query: 227 ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 279
+ +D G +P+ + DK+ + + F PT V+IG G+ L + V E
Sbjct: 78 RQYVKDYG-LPFTVMYDADKA---VGQAFGTQVYPTSVLIGKKGEILKTYVGE 126
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
F A+WCGPC+ P+L E+ E R D V + D + E + +
Sbjct: 32 FWATWCGPCKMVAPVLEEIATE--RATDLTVAKLDVDTNPETARNF 75
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of
Thioredoxin 1 From Yeast (Trx1)
Length = 103
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 78
F A+WCGPC+ P++ E ++E Q DF + V DE D A K S MP L
Sbjct: 25 FYATWCGPCKMIAPMI-EKFSEQYPQADFYKLDV--DELGDVAQKNEVSAMPTL 75
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 78
F A+WCGPC+ P++ E ++E Q DF + V DE D A K S MP L
Sbjct: 31 FYATWCGPCKMIAPMI-EKFSEQYPQADFYKLDV--DELGDVAQKNEVSAMPTL 81
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKMP 76
F A+WCGPC+ P+ + ELS + ++ IFV D D + A K S MP
Sbjct: 40 FFATWCGPCKTIAPL----FKELSEK--YDAIFVKVDVDKLEETARKYNISAMP 87
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 37/108 (34%)
Query: 319 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 378
GDL+ ++ ++ K+ V D F A WC PC+ P KE +E + +
Sbjct: 22 GDLESLLEQHKNKLVVVD---------FFATWCGPCKTIAPLF-------KELSEKYDAI 65
Query: 379 FISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAI 426
F+ D D+ +RK+ +S +P +AI
Sbjct: 66 FVKVDVDKLE---------------------ETARKYNISAMPTFIAI 92
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
F A WCGPC+ P+L E+ E+ + +++ + DE+ E Y
Sbjct: 24 FWAPWCGPCKMIAPVLEELDQEMGDK--LKIVKIDVDENQETAGKY 67
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 341 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGMPWL 399
+L F A WC PC+ P L + +E + L++V I D +Q + ++ +P L
Sbjct: 19 VVLADFWAPWCGPCKMIAPVLEELD---QEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 400 ALPFGDARKASLSRKFK 416
L D S FK
Sbjct: 76 -LVLKDGEVVETSVGFK 91
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
F A+WCGPC+ P+L E+ E R D V + D + E + +
Sbjct: 37 FWATWCGPCKMVAPVLEEIATE--RATDLTVAKLDVDTNPETARNF 80
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY--QGKLTVAKLNIDQN 63
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 66
F A WCGPC+ PIL +EL+++ D +++ D + E
Sbjct: 45 FYADWCGPCKMVAPIL----DELAKEYDGQIVIYKVDTEKE 81
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 26 FSASWCGPCQRFTPILAEVYNE 47
F A WCGPC+ F PI AE E
Sbjct: 62 FWAPWCGPCRSFAPIFAETAAE 83
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL ++ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDDIADEY--QGKLTVAKLNIDQN 63
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGM 396
A IL+ F A WC PC+ P L D E L V ++ D++ + ++ +G+
Sbjct: 19 ADGAILVDFWAEWCGPCKMIAPILDDI---ADEYQGKLTVAKLNIDQNPGTAPKYGIRGI 75
Query: 397 PWLAL 401
P L L
Sbjct: 76 PTLLL 80
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ PIL E+ ++ QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKMIAPILDEIADDY--QGKLTVAKLNIDQN 63
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 20 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
G + + F A WCGPC+ P L E+ E + G V V+ D++ E Y
Sbjct: 21 GLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNIDDNPETPNAY 70
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
F+ASWCGPC+ P A++ +L V+F+ D D+
Sbjct: 45 FTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDE 79
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 342 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ---TSFDEFFKGMP 397
+++ F+A WC PCR P D KK+ V+F+ D D+ + D + MP
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKLP------NVLFLKVDTDELKSVASDWAIQAMP 93
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 35.4 bits (80), Expect = 0.090, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 14 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGY 71
+L GK + L F A+WCGPC+ +P L E+ + + + V+ V DE +D A +
Sbjct: 19 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYN 76
Query: 72 FSKMP 76
S MP
Sbjct: 77 ISSMP 81
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
+GK ++L F A WC PC+ PKL++ + + VV + D D+
Sbjct: 24 SGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-----NVVVLKVDVDE 67
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 35.0 bits (79), Expect = 0.098, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 14 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGY 71
+L GK + L F A+WCGPC+ +P L E+ + + + V+ V DE +D A +
Sbjct: 14 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYN 71
Query: 72 FSKMP 76
S MP
Sbjct: 72 ISSMP 76
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
+GK ++L F A WC PC+ PKL++ + + VV + D D+
Sbjct: 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-----NVVVLKVDVDE 62
>pdb|2K6V|A Chain A, Solution Structures Of Apo Sco1 Protein From Thermus
Thermophilus
Length = 172
Score = 35.0 bits (79), Expect = 0.099, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 321 LDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER-NESLEVV 378
+DF + G V +S K +LL+F CP C L L AY+K+ + E ++V+
Sbjct: 17 VDFALEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVI 76
Query: 379 FISSDRDQ 386
F+S D ++
Sbjct: 77 FVSVDPER 84
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 336 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 385
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 318 SGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV 377
+ DL+ ++ +N G++ V D F A WC PCR PK+ K+I EV
Sbjct: 7 AADLEKLINENKGRLIVVD---------FFAQWCGPCRNIAPKVEALAKEIP------EV 51
Query: 378 VFISSDRDQ 386
F D DQ
Sbjct: 52 EFAKVDVDQ 60
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMP 76
F A WCGPC+ P + + E+ + E V D+++EA Y + MP
Sbjct: 26 FFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMP 74
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 336 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 385
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP-WLAVPF 82
+ F ASWC C+ P L V E F VI + E Y P ++ +
Sbjct: 35 IVFWASWCTVCKAEFPGLHRVAEETGVP--FYVISREPRDTREVVLEYMKTYPRFIPLLA 92
Query: 83 SDSETRDKLDELFKVMGIPHLVILDENGKVLS 114
SD + ++ FKV+G P ++D GKV++
Sbjct: 93 SDRDRPHEVAARFKVLGQPWTFVVDREGKVVA 124
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 336 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 385
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
F A+WCGPC+ P L E+ +S +V+F+ D D+
Sbjct: 27 FYATWCGPCKMIAPKLEELSQSMS-----DVVFLKVDVDE 61
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 334 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL-EVVFISSDRDQ 386
+++ K +++ F A WC PC+ PKL +E ++S+ +VVF+ D D+
Sbjct: 15 LNEAGNKLVVIDFYATWCGPCKMIAPKL-------EELSQSMSDVVFLKVDVDE 61
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 63
F A WCGPC+ +PIL E+ + G +V+ V+ DE
Sbjct: 57 FFAPWCGPCRLVSPILEELARD--HAGRLKVVKVNVDE 92
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 336 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 385
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 336 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 385
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 26 FSASWCGPCQRFTPILAE 43
F+ASWCGPC+ P+ AE
Sbjct: 35 FTASWCGPCRVIAPVFAE 52
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKK 367
GK +++ F+A WC PCR P + KK
Sbjct: 28 GKLVIIDFTASWCGPCRVIAPVFAEYAKK 56
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 331 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
++ ++ A K +++ F+A WC PCR P D KK VF+ D D+
Sbjct: 26 QIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP------NAVFLKVDVDE 75
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 26 FSASWCGPCQRFTPILAEV 44
F+ASWCGPC+ P+ A++
Sbjct: 41 FTASWCGPCRIMAPVFADL 59
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 380
+G + ++++ G ++L+F A WCP C ++ L+D ++ E+ + V+ I
Sbjct: 26 DGEVISLNNVGGDVVILWFMAAWCPSC-VYMADLLD---RLTEKYREISVIAI 74
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
AGK +++ F+A WC PCR P + KK VF+ D D+
Sbjct: 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP------GAVFLKVDVDE 77
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 26 FSASWCGPCQRFTPILAE 43
F+ASWCGPC+ P+ AE
Sbjct: 43 FTASWCGPCRFIAPVFAE 60
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 336 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 385
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 336 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 385
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 9 LLLRVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
LL R+K G + + F A+WCGPCQR IL + + + +V F+ D D
Sbjct: 15 LLNRIK--EAPGLVLVDFFATWCGPCQRLGQILPSI-----AEANKDVTFIKVDVD 63
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 48 LSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP---------FSDSETRDKLDELFKVM 98
+ R+ D ++I +S D E F+ YF+ P LAVP ++ RD LD + +
Sbjct: 235 VKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTV 294
Query: 99 GIPHLVILDENGKVL-----SDGGVEIIREYGVEG 128
H +E G +L D + +R+ +EG
Sbjct: 295 LQIHAT--EEAGDILLFLTGEDEIEDAVRKISLEG 327
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 48 LSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP---------FSDSETRDKLDELFKVM 98
+ R+ D ++I +S D E F+ YF+ P LAVP ++ RD LD + +
Sbjct: 235 VKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTV 294
Query: 99 GIPHLVILDENGKVL-----SDGGVEIIREYGVEG 128
H +E G +L D + +R+ +EG
Sbjct: 295 LQIHAT--EEAGDILLFLTGEDEIEDAVRKISLEG 327
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 66
F A WCGPC+ PIL E+ E + G + V+ D++ E
Sbjct: 58 FYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPE 96
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 1 MEIMKIYELLLRVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 60
M I+K+ + K++S G + F A+WCG C+ P+L E+ + +G +++ +
Sbjct: 4 MAIVKVTDADFDSKVES--GVQLVDFWATWCGTCKMIAPVLEELAAD--YEGKADILKLD 59
Query: 61 GDEDDEAFKGY-FSKMPWLAVPFSDSETRDKL 91
DE+ Y +P L V F D + DK+
Sbjct: 60 VDENPSTAAKYEVMSIPTLIV-FKDGQPVDKV 90
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 66
F A WCGPC+ PIL E+ E + G + V+ D++ E
Sbjct: 58 FYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPE 96
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 316 LVSGDLDFVVGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE 373
L G++ + K +S+ + GK +L FSA WC PC+ P Y ++ E
Sbjct: 21 LAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAP----YYIELSENYP 76
Query: 374 SLEVVFISSD 383
SL + I D
Sbjct: 77 SLMFLVIDVD 86
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 17 SLKGKIGL-YFSASWCGPCQRFTPILAEV 44
S GKI L FSA WCGPC++ P E+
Sbjct: 43 SRDGKIVLANFSARWCGPCKQIAPYYIEL 71
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 26/94 (27%)
Query: 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 81
I LYF SW PC+ + + NE S V F+S D D+ +
Sbjct: 24 IVLYFHTSWAEPCKALKQVFEAISNEPSNS---NVSFLSIDADENS-------------- 66
Query: 82 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 115
++ ELF++ +P+ +I+ G +L +
Sbjct: 67 --------EISELFEISAVPYFIII-HKGTILKE 91
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 27/97 (27%)
Query: 340 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 399
K I+LYF W PC+A L ++ I + V F+S D D+ S
Sbjct: 22 KLIVLYFHTSWAEPCKA----LKQVFEAISNEPSNSNVSFLSIDADENS----------- 66
Query: 400 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 436
+S F++S +P + I TI KE
Sbjct: 67 ----------EISELFEISAVPYFIIIHKG--TILKE 91
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 340 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
K I++ F+A WCPPC+ P + KK V F+ D D+
Sbjct: 27 KLIVVDFTASWCPPCKMIAPIFAELAKKFP------NVTFLKVDVDE 67
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
F+ASWC PC+ PI AE+ + V F+ D D+
Sbjct: 33 FTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDE 67
>pdb|3EWL|A Chain A, Crystal Structure Of Conserved Protein Bf1870 Of Unknown
Function From Bacteroides Fragilis
pdb|3EWL|B Chain B, Crystal Structure Of Conserved Protein Bf1870 Of Unknown
Function From Bacteroides Fragilis
Length = 142
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 24 LYFSASWCGPCQRFTPILAEV--YNELSRQGDFEVIFVSGDEDDE--AFKGYFSKMPWLA 79
L+F C C++F + AE+ + E G V+ + DE+ E A K + W+
Sbjct: 32 LFFYDPDCSNCRKFEKLFAEIPAFVEXVENGTLRVLAIYPDENREEWATKAVYXPQGWIV 91
Query: 80 VPFSDSETRDKLDELFKVMGIPHLVILDENGKV-LSDGGVEIIREY 124
+ R + +L+ + P + +LD +V L D E + +Y
Sbjct: 92 GWNKAGDIRTR--QLYDIRATPTIYLLDGRKRVILKDTSXEQLIDY 135
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin
C35a
Length = 128
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGP + PIL E+ +E QG V ++ D++
Sbjct: 35 DVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVAKLNIDQN 83
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGPC+ IL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPCKLIASILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCG C+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGHCKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCGP + PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGPSKMIAPILDEIADEY--QGKLTVAKLNIDQN 63
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 84
F A+WCG C+ P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 26 FWATWCGSCKMIAPVLEELAAD--YEGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 82
Query: 85 SETRDKL 91
+ DK+
Sbjct: 83 GQPVDKV 89
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAV 80
I + F+ SWC PC++ P E+ +++ +GD ++ ++ ++ +P LA+
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQM--EGDIRFAYMDAEDAEKTMAELNIRTLPSLAL 77
Query: 81 PFSDSETRD 89
F D R+
Sbjct: 78 -FVDGMIRE 85
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGPC+ P + + S VIF+ D +D
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVND 61
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 84
F A WCGPC+ PI+ E+ E +G +V+ V+ DE+ Y +P L + F +
Sbjct: 26 FWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNVDENPNTAAQYGIRSIPTLLL-FKN 82
Query: 85 SETRDKL 91
+ D+L
Sbjct: 83 GQVVDRL 89
>pdb|3FKF|A Chain A, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|B Chain B, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|C Chain C, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|D Chain D, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
Length = 148
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK--MPWLAV- 80
L F ASWC P L + E + +F + +S D D EA++ K + W V
Sbjct: 38 LNFWASWCDPQPEANAELKRLNKEYKKNKNFAXLGISLDIDREAWETAIKKDTLSWDQVC 97
Query: 81 PFS--DSETRDKLDELFKVMGIPHLVILDENGKVLS 114
F+ SET + + ++ +P ++L GK+L+
Sbjct: 98 DFTGLSSETAKQ----YAILTLPTNILLSPTGKILA 129
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 13/91 (14%)
Query: 192 KASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF----KRDLGSMPWLAL-PFKDK 246
+A+AE RL + Y+K K +F + ISLD + E++ K+D ++ W + F
Sbjct: 50 EANAELK-RLNKEYKKNK----NFAXLGISLDIDREAWETAIKKD--TLSWDQVCDFTGL 102
Query: 247 SREKLARYFELSTLPTLVIIGPDGKTLHSNV 277
S E A+ + + TLPT +++ P GK L ++
Sbjct: 103 SSET-AKQYAILTLPTNILLSPTGKILARDI 132
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin
W28a Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin
W28a Mutant
Length = 106
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 1 MEIMKIYELLLRVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 60
M I+K+ + K++S G + F A+ CGPC+ P+L E+ + +G +++ +
Sbjct: 3 MAIVKVTDADFDSKVES--GVQLVDFWATACGPCKMIAPVLEELAAD--YEGKADILKLD 58
Query: 61 GDEDDEAFKGY-FSKMPWLAVPFSDSETRDKL 91
DE+ Y +P L V F D + DK+
Sbjct: 59 VDENPSTAAKYEVMSIPTLIV-FKDGQPVDKV 89
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 333 PVSDLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
P+ AG K ++L WC P +A PK Y+K+ E E L+V+F+ D +Q
Sbjct: 17 PIVKAAGDKPVVLDMFTQWCGPSKAMAPK----YEKLAE--EYLDVIFLKLDCNQ 65
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
F A WCGP + P+L E+ E+ + +++ + DE+ E Y
Sbjct: 24 FWAPWCGPSKMIAPVLEELDQEMGDK--LKIVKIDVDENQETAGKY 67
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 20 GKIGLYFSASWCGPCQRFTPILAE 43
G + + F A+WCGPC+ P+L E
Sbjct: 18 GPVLVDFWAAWCGPCRMMAPVLEE 41
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
F A WCGP + P+L E+ E+ + +++ + DE+ E Y
Sbjct: 24 FWAPWCGPSKMIAPVLEELDQEMGDK--LKIVKIDVDENQETAGKY 67
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
Length = 109
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 78
F A+WCGP + P++ E ++E Q DF + V DE D A K S MP L
Sbjct: 31 FYATWCGPSKMIAPMI-EKFSEQYPQADFYKLDV--DELGDVAQKNEVSAMPTL 81
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 20 GKIGLYFSASWCGPCQRFTPILAE 43
G + + F A+WCGPC+ P+L E
Sbjct: 18 GPVLVDFWAAWCGPCRMMAPVLEE 41
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 32.3 bits (72), Expect = 0.62, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
F A+WCGP + P+L E+ E R D V + D + E + +
Sbjct: 34 FWATWCGPSKMVAPVLEEIATE--RATDLTVAKLDVDTNPETARNF 77
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 25/84 (29%)
Query: 341 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 400
T+LL F A WC C+ F P+ +K+ + + V I
Sbjct: 36 TVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKI-------------------- 75
Query: 401 LPFGDARKAS-LSRKFKVSGIPML 423
DA AS L+ KF VSG P +
Sbjct: 76 ----DATSASMLASKFDVSGYPTI 95
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 19 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 78
K + L F A WCG C++F P ++E I + ++D P +
Sbjct: 34 KDTVLLEFYAPWCGHCKQFAP-------------EYEKIASTLKDND----------PPI 70
Query: 79 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 116
AV D+ + L F V G P + IL + V DG
Sbjct: 71 AVAKIDATSASMLASKFDVSGYPTIKILKKGQAVDYDG 108
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 26 FSASWCGPCQRFTPILAEVYNELS 49
F+A+WCGPC+ P+ + N+ +
Sbjct: 31 FTATWCGPCKMIAPLFETLSNDYA 54
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 63
F A WCGPC+ P++ E+ E S G V ++ DE
Sbjct: 25 FWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDE 60
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 63
F A WCGPC+ P++ E+ E S G V ++ DE
Sbjct: 24 FWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDE 59
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli
Thioredoxin With An Arginine Insertion In The Active
Site
Length = 109
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 16 DSLK--GKIGLYFSASWCG-PCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
D LK G I + F A WCG PC+ PIL E+ +E QG V ++ D++
Sbjct: 15 DVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEY--QGKLTVAKLNIDQN 64
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 32.3 bits (72), Expect = 0.70, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 26 FSASWCGPCQRFTPILAEVYNELS 49
F+A+WCGPC+ P+ + N+ +
Sbjct: 31 FTATWCGPCKMIAPLFETLSNDYA 54
>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
Length = 297
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 68 FKGYFSKMPWL-AVPFSDSETRDKLDELFKVMGIP---HLVILDENGKVLSDGGVEIIRE 123
F+G+ K+ L P S + ++ F +GIP HL + E G+V + +R
Sbjct: 18 FQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSV-EPGQV--GAAIAGVRA 74
Query: 124 YGVEGYPFTVER----IKEMKEQEERAKREQSLRSVLTSHSR-----------------D 162
G+ G T+ I + E +E A+R ++ +++ + R +
Sbjct: 75 LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINNDGRLVGYNTDGLGYVQALEEE 134
Query: 163 FVISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKGESFEIVLIS 221
I+ DG++I V G G+YFS+ S A + R VE E+L +G+ S
Sbjct: 135 MNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS 194
Query: 222 LDDEE 226
L + E
Sbjct: 195 LAEAE 199
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 26 FSASWCGPCQRFTPILAE 43
F A+WCGPC+ P+L E
Sbjct: 24 FWAAWCGPCRMMAPVLEE 41
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
F A WCGPC+R P E ++ ++F+ D D+
Sbjct: 33 FFAEWCGPCKRIAPFYEECSKTYTK-----MVFIKVDVDE 67
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 73 SKMPWLAVPFSDSETRDKLDELFKVM----GIPHLVILDENGKVLSDGGVEIIREYGVEG 128
+ +P + VP S T + LD LF ++ G+P + N K + G+ G++
Sbjct: 90 THLPVIGVPVKTS-TLNGLDSLFSIVQMPGGVPVATVAINNAK---NAGILAASILGIK- 144
Query: 129 YPFTVERIKEMKEQEERAKREQSLR 153
YP ++KE KE+ +R E++ R
Sbjct: 145 YPEIARKVKEYKERMKREVLEKAQR 169
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 26 FSASWCGPCQRFTPILAE 43
F A+WCGPC+ P+L E
Sbjct: 24 FWAAWCGPCRMMAPVLEE 41
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKMPWL 78
F A+WCGPC+ P++ + + S + F D D D A K S MP L
Sbjct: 33 FFATWCGPCKMIAPMIEKFAEQYS-----DAAFYKLDVDEVSDVAQKAEVSSMPTL 83
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 335 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 392
+ L GK +L+F WCP C A P L ++ N ++ V I++ D + F
Sbjct: 20 ASLQGKPAVLWFWTPWCPFCNAEAPSL----SQVAAANPAVTFVGIATRADVGAMQSF 73
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKMPWL 78
F A+WCGPC+ P++ + + S + F D D D A K S MP L
Sbjct: 26 FFATWCGPCKMIAPMIEKFAEQYS-----DAAFYKLDVDEVSDVAQKAEVSSMPTL 76
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 26 FSASWCGPCQRFTP 39
F A WCGPCQ F P
Sbjct: 28 FYAPWCGPCQNFAP 41
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 340 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV----FISSDRDQTSFDEFFKG 395
K L+ F A WCP C + L + + K + +L V F+ +D F +++ G
Sbjct: 24 KPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKD-GDFQKWYAG 82
Query: 396 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 430
+ + LP ++++ +S P IG G
Sbjct: 83 LNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDG 117
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
F A WC PC+ PIL E+ E +G V + DE+ + Y
Sbjct: 26 FWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPKTAXRY 69
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 71
F A WC PC+ PIL E+ E +G V + DE+ + Y
Sbjct: 25 FWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPKTAXRY 68
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 340 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV----FISSDRDQTSFDEFFKG 395
K L+ F A WCP C + L + + K + +L V F+ +D F +++ G
Sbjct: 25 KPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKD-GDFQKWYAG 83
Query: 396 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 430
+ + LP ++++ +S P IG G
Sbjct: 84 LNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDG 118
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 340 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV----FISSDRDQTSFDEFFKG 395
K L+ F A WCP C + L + + K + +L V F+ +D F +++ G
Sbjct: 39 KPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKD-GEFQKWYAG 97
Query: 396 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 430
+ + LP ++++ +S P IG G
Sbjct: 98 LNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDG 132
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 319 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPK 360
G + VV KN ++ + D K +L+ F A WC C+A PK
Sbjct: 7 GPVTVVVAKNYNEIVLDDT--KDVLIEFYAPWCGHCKALAPK 46
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 316 LVSGDLDFVVGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE 373
L G++ + K +S+ + GK +L FSA WC P R P Y ++ E
Sbjct: 21 LAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAP----YYIELSENYP 76
Query: 374 SLEVVFISSD 383
SL + I D
Sbjct: 77 SLMFLVIDVD 86
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Mutant Human Thioredoxin
And A 13 Residue Peptide Comprising Its Target Site In
Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (c35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (Residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, Minimized
Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGP + P + + S VIF+ D DD
Sbjct: 27 FSATWCGPAKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|3HCZ|A Chain A, The Crystal Structure Of A Domain Of Possible
Thiol-disulfide Isomerase From Cytophaga Hutchinsonii
Atcc 33406
Length = 148
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP---WLAV 80
L+F S CG CQ+ TP L + + + +R +V + + DE + + WL V
Sbjct: 36 LFFWDSQCGHCQQETPKLYDWWLK-NRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNV 94
Query: 81 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 114
DS+ + + P L +LD+N +++
Sbjct: 95 --RDSKNHTDFKITYDIYATPVLYVLDKNKVIIA 126
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 25/84 (29%)
Query: 341 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 400
T+LL F A WC C+ F P+ Y+KI I D+D P +
Sbjct: 34 TVLLEFYAPWCGHCKQFAPE----YEKIAN---------ILKDKD-----------PPIP 69
Query: 401 LPFGDARKAS-LSRKFKVSGIPML 423
+ DA AS L+ +F VSG P +
Sbjct: 70 VAKIDATSASVLASRFDVSGYPTI 93
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 34/148 (22%)
Query: 19 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 78
K + L F A WCG C++F P ++ N L K P +
Sbjct: 32 KDTVLLEFYAPWCGHCKQFAPEYEKIANILK-----------------------DKDPPI 68
Query: 79 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKE 138
V D+ + L F V G P + IL + G+ + G E V +++E
Sbjct: 69 PVAKIDATSASVLASRFDVSGYPTIKIL-KKGQAVDYEGSRTQEE--------IVAKVRE 119
Query: 139 MKEQEERAKREQSLRSVLTSHSRDFVIS 166
+ + + E +L VLT + D V++
Sbjct: 120 VSQPDWTPPPEVTL--VLTKENFDEVVN 145
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 15 LDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 73
L SLK + + A+WCGPC++ P ++ Y + ++G + + ++ D D G F
Sbjct: 19 LQSLKAPVRIVNLWATWCGPCRKEXPAXSKWY-KAQKKGSVDXVGIALDTSDNI--GNFL 75
Query: 74 KMPWLAVP 81
K ++ P
Sbjct: 76 KQTPVSYP 83
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGP + P + + S VIF+ D DD
Sbjct: 27 FSATWCGPSKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 17 SLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS-GDEDDEA--FKGYF 72
+ KGK+ L ASWC PC P+L EL + F+++ ++ D D A F G +
Sbjct: 39 AFKGKVSLVNVWASWCVPCHDEAPLL----TELGKDKRFQLVGINYKDAADNARRFLGRY 94
Query: 73 SKMPWLAVPFS----DSETRDKLDELFKVMGIPHLVILDENGKVL 113
PF D+ R ++ + V G+P ++ G ++
Sbjct: 95 GN------PFGRVGVDANGRASIE--WGVYGVPETFVVGREGTIV 131
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64
F A+WCGPC++ P L + E + E++ ++ DE+
Sbjct: 30 FWAAWCGPCRQIAPSLEAIAAEYGDK--IEIVKLNIDEN 66
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 340 KTILLYFSAHWCPPCRAFLPKL 361
K +L+ F A WC PCR P L
Sbjct: 24 KPVLVDFWAAWCGPCRQIAPSL 45
>pdb|3GU0|A Chain A, Promiscuous Substrate Recognition In Folding And Assembly
Activities Of The Trigger Factor Chaperone
Length = 412
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 156 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL--VEVYEKL----- 208
LTS ++VIS D + V DL GK G + ++T +L EVY++
Sbjct: 175 LTSREYEYVISEDEDRPFVKDLVGKKKGDVVEIEREYEGKKYTYKLEVEEVYKRTLPEIG 234
Query: 209 ----KGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 264
K FE +L+ +ES K++ G + + K+ RE+L L LP +V
Sbjct: 235 DELAKSVNNEFE----TLEQLKESLKKE-GKEIY-DVEMKESMREQL-----LEKLPEIV 283
Query: 265 IIGPDGKTLHSNVAEAI 281
I +TL V EAI
Sbjct: 284 EIEISDRTLEILVNEAI 300
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 26 FSASWCGPCQRFTPILAEVYNE 47
F A WCGPC+ P++ E+ E
Sbjct: 26 FWAPWCGPCRIIAPVVDEIAGE 47
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
Fastidiosa Temecula1
Length = 133
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 340 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 399
K LL F A+WC CRA L K + K + EVV I D +FD + L
Sbjct: 30 KPTLLVFGANWCTDCRA-LDKSLRNQKNTALIAKHFEVVKI----DVGNFDRNLE----L 80
Query: 400 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 431
+ +GD + GIP +V + G+
Sbjct: 81 SQAYGDPIQ---------DGIPAVVVVNSDGK 103
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 26 FSASWCGPCQRFTPI---LAEVYNEL 48
FSA+WCGPC+ P L+E Y+ +
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSNV 52
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 336 DLAG-KTILLYFSAHWCPPCRAFLP 359
D AG K +++ FSA WC PC+ P
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP 40
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 21 KIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
K+ + F A+WCGPC+ P L ++ Q +V FV D D+
Sbjct: 32 KLVIDFYATWCGPCKMMQPHLTKLI-----QAYPDVRFVKCDVDE 71
>pdb|3GTY|X Chain X, Promiscuous Substrate Recognition In Folding And Assembly
Activities Of The Trigger Factor Chaperone
Length = 433
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 156 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL--VEVYEKL----- 208
LTS ++VIS D + V DL GK G + ++T +L EVY++
Sbjct: 175 LTSREYEYVISEDEDRPFVKDLVGKKKGDVVEIEREYEGKKYTYKLEVEEVYKRTLPEIG 234
Query: 209 ----KGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 264
K FE +L+ +ES K++ G + + K+ RE+L L LP +V
Sbjct: 235 DELAKSVNNEFE----TLEQLKESLKKE-GKEIY-DVEMKESMREQL-----LEKLPEIV 283
Query: 265 IIGPDGKTLHSNVAEAI 281
I +TL V EAI
Sbjct: 284 EIEISDRTLEILVNEAI 300
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGP + P + + S VIF+ D DD
Sbjct: 27 FSATWCGPSKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 331 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 386
++ ++ A K +++ F+A WC P R P D KK VF+ D D+
Sbjct: 29 QIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFP------NAVFLKVDVDE 78
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 26 FSASWCGPCQRFTPILAEV 44
F+ASWCGP + P+ A++
Sbjct: 44 FTASWCGPSRIMAPVFADL 62
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65
FSA+WCGP + P + + S VIF+ D DD
Sbjct: 38 FSATWCGPSKMIKPFFHSLSEKYSN-----VIFLEVDVDD 72
>pdb|2JU5|A Chain A, Dsbh Oxidoreductase
Length = 154
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 22 IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAV 80
IGL+F+ S WC C ++ +++ + +F+ F G M +
Sbjct: 50 IGLFFTGSDWCMWC-------IKMQDQILQSSEFK-----------HFAGVHLHMVEVDF 91
Query: 81 PFSD---SETRDKLDEL---FKVMGIPHLVILDENGKVLSDGGVE 119
P + E R K EL +KV G P LV +D GK L+ G E
Sbjct: 92 PQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFE 136
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 67
F A+WCGPC+ P+ ++ + + GD +V F D D+++
Sbjct: 40 FWATWCGPCKMIGPVFEKISD--TPAGD-KVGFYKVDVDEQS 78
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 1 MEIMKIYELLLRVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 60
M I+K+ + K++S G + F A+WCG + P+L E+ + +G +++ +
Sbjct: 4 MAIVKVTDADFDSKVES--GVQLVDFWATWCGTSKMIAPVLEELAAD--YEGKADILKLD 59
Query: 61 GDEDDEAFKGY-FSKMPWLAVPFSDSETRDKL 91
DE+ Y +P L V F D + DK+
Sbjct: 60 VDENPSTAAKYEVMSIPTLIV-FKDGQPVDKV 90
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 357 FLPKLIDAYKKIKERNESLEVVFI 380
F KL D KKIK+RNE+LEV +I
Sbjct: 663 FQDKLEDISKKIKQRNENLEVPYI 686
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 357 FLPKLIDAYKKIKERNESLEVVFI 380
F KL D KKIK+RNE+LEV +I
Sbjct: 660 FQDKLEDISKKIKQRNENLEVPYI 683
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 357 FLPKLIDAYKKIKERNESLEVVFI 380
F KL D KKIK+RNE+LEV +I
Sbjct: 660 FQDKLEDISKKIKQRNENLEVPYI 683
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 357 FLPKLIDAYKKIKERNESLEVVFI 380
F KL D KKIK+RNE+LEV +I
Sbjct: 1030 FQDKLEDISKKIKQRNENLEVPYI 1053
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human
Txnl2
Length = 153
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 7 YELLLRVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSR 50
+E LLR+K SL + ++F A W C + ++AE+ EL +
Sbjct: 23 FEELLRLKAKSL---LVVHFWAPWAPQCAQMNEVMAELAKELPQ 63
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 357 FLPKLIDAYKKIKERNESLEVVFI 380
F KL D KKIK+RNE+LEV +I
Sbjct: 660 FQDKLEDISKKIKQRNENLEVPYI 683
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGM 396
A K +L+ F A WC C+A P+ A K+K + + + + + ++ +G
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82
Query: 397 P 397
P
Sbjct: 83 P 83
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 7 YELLLRVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 66
+E LLR+K SL + ++F A W C + ++AE+ EL + ++ E E
Sbjct: 29 FEELLRLKAKSL---LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSE 85
Query: 67 AFKGYFSKMPWLAVPFSDSETRDKLD 92
++ S +P F +S+ D+LD
Sbjct: 86 KYE--ISSVPTFLF-FKNSQKIDRLD 108
>pdb|2FHX|A Chain A, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
pdb|2FHX|B Chain B, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
Length = 246
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 45 YNELSRQGDFEVIFVSGDEDDEAFKGYFSKM-----PWLAVPFSDSETRDKLDELFKVMG 99
YN + + D +V FV D D + +KM ++ PF + T+ +D + K M
Sbjct: 8 YNLTATKIDSDV-FVVTDRDFYSSNVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMK 66
Query: 100 IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE---RIKEMKEQEERA----KREQSL 152
+V ++ + + GG EI ++ G E + + R++E K+ +A K E
Sbjct: 67 PKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLK 126
Query: 153 RSVLTSH 159
R +L+SH
Sbjct: 127 RRILSSH 133
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 339 GKTILLYFSAHWCPPCRAFLP---KLIDAYKK 367
GK +L+ F A WCP CR P +L+ ++ K
Sbjct: 41 GKIVLVNFWASWCPYCRDEXPSXDRLVKSFPK 72
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 337 LAGKTILLYFSAHWCPPCRAFLP 359
L GK +L+F A WCP C+ P
Sbjct: 23 LLGKPAVLWFWAPWCPTCQGEAP 45
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 16 DSLKGKIG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 74
+SL GK L+F A WC CQ P++ +V + + + V+G + A + + +K
Sbjct: 21 ESLLGKPAVLWFWAPWCPTCQGEAPVVGQV---AASHPEVTFVGVAGLDQVPAMQEFVNK 77
Query: 75 MP 76
P
Sbjct: 78 YP 79
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 337 LAGKTILLYFSAHWCPPCRAFLP 359
L GK +L+F A WCP C+ P
Sbjct: 37 LLGKPAVLWFWAPWCPTCQGEAP 59
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 16 DSLKGKIG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 74
+SL GK L+F A WC CQ P++ +V + + + V+G + A + + +K
Sbjct: 35 ESLLGKPAVLWFWAPWCPTCQGEAPVVGQV---AASHPEVTFVGVAGLDQVPAMQEFVNK 91
Query: 75 MP 76
P
Sbjct: 92 YP 93
>pdb|3VIU|A Chain A, Crystal Structure Of Purl From Thermus Thermophilus
Length = 725
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 290 PFTPEKFAELAE-IQRAKEESQTLESVLVSGDLDFVVGKNGGKVP 333
P TPE + ELAE I KE S+ L +VSG++ G ++P
Sbjct: 492 PETPEGYHELAETIAGLKEASEALGVPVVSGNVSLYNESGGKRIP 536
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 306 KEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAY 365
K+E TL VL + D V+ N K +L+ A WC PC + P Y
Sbjct: 1 KKEDVTL--VLTEENFDEVIRNN-----------KLVLVDCWAEWCAPCHLYEP----IY 43
Query: 366 KKIKERNESLEVVF--ISSDRDQTSFDEF 392
KK+ E+ + + VF ++ D +Q D++
Sbjct: 44 KKVAEKYKG-KAVFGRLNVDENQKIADKY 71
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 342 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 385
+L F A WC C+ P+ + A + + E+N +L + + ++D
Sbjct: 34 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD 77
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 85
FS C CQ+ TP+L E+ L+ + F +V +E+ F+ + K + F D
Sbjct: 29 FSRKNCHVCQKVTPVLEEL--RLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDG 86
Query: 86 ETRDK 90
E + K
Sbjct: 87 EYKGK 91
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 113 LSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 172
L+DG + E G P + + E +R+ L H DF ISSDG +
Sbjct: 21 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEISSDGTAM 80
Query: 173 SVSDLE 178
+ SD+E
Sbjct: 81 NKSDVE 86
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 63
F A WCGP + P++ E+ E S G V ++ DE
Sbjct: 25 FWAPWCGPSKLIAPVIDELAKEYS--GKIAVYKLNTDE 60
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 20/115 (17%)
Query: 222 LDDEEESFKRDLGSMPWLALPFK-DKSREKLARYFELSTLPTLVIIGPDGKTL-----HS 275
+DD + G W + D + LA+ F L T V++ PDGKT+ H
Sbjct: 251 IDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 310
Query: 276 NVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEE-------------SQTLESVLV 317
V EH G P + A + R E +QTLE V V
Sbjct: 311 TVTRHYREHQKGR-PTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCV 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,102,030
Number of Sequences: 62578
Number of extensions: 756315
Number of successful extensions: 2611
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 2249
Number of HSP's gapped (non-prelim): 362
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)