Query 008845
Match_columns 551
No_of_seqs 553 out of 4256
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 17:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 4.5E-30 9.8E-35 259.7 19.7 317 22-430 45-449 (493)
2 PTZ00102 disulphide isomerase; 100.0 3.4E-28 7.4E-33 259.3 24.4 352 19-472 48-470 (477)
3 TIGR01130 ER_PDI_fam protein d 99.9 3.7E-24 8E-29 227.5 27.8 347 19-431 17-431 (462)
4 cd03009 TryX_like_TryX_NRX Try 99.9 7E-24 1.5E-28 184.8 13.8 130 322-451 1-131 (131)
5 cd03008 TryX_like_RdCVF Trypar 99.9 1.1E-23 2.4E-28 183.1 11.1 119 330-448 16-141 (146)
6 cd02964 TryX_like_family Trypa 99.9 1.9E-22 4.1E-27 175.8 13.2 128 323-451 2-132 (132)
7 cd03008 TryX_like_RdCVF Trypar 99.9 3.9E-22 8.5E-27 173.5 10.7 117 11-128 16-141 (146)
8 cd03009 TryX_like_TryX_NRX Try 99.8 1.4E-20 2.9E-25 164.0 13.0 127 4-131 3-131 (131)
9 KOG2501 Thioredoxin, nucleored 99.8 2E-20 4.3E-25 160.2 12.0 121 325-445 18-141 (157)
10 cd02964 TryX_like_family Trypa 99.8 5.1E-20 1.1E-24 160.4 12.5 121 11-131 8-132 (132)
11 KOG2501 Thioredoxin, nucleored 99.8 6.2E-20 1.4E-24 157.1 10.2 123 164-286 17-142 (157)
12 PF13905 Thioredoxin_8: Thiore 99.8 4.4E-19 9.4E-24 145.3 12.1 93 339-432 1-95 (95)
13 cd02967 mauD Methylamine utili 99.8 5.5E-19 1.2E-23 149.9 12.4 110 321-436 1-112 (114)
14 PF08534 Redoxin: Redoxin; In 99.8 9.2E-19 2E-23 155.6 13.1 115 320-438 6-133 (146)
15 cd03012 TlpA_like_DipZ_like Tl 99.8 6.5E-19 1.4E-23 152.2 10.5 108 328-438 12-124 (126)
16 cd03010 TlpA_like_DsbE TlpA-li 99.8 4.4E-18 9.6E-23 147.3 11.5 113 320-437 3-118 (127)
17 PRK14018 trifunctional thiored 99.8 1.2E-17 2.5E-22 173.5 16.6 116 319-438 37-158 (521)
18 PRK15412 thiol:disulfide inter 99.8 4.8E-18 1E-22 156.7 12.2 113 319-438 44-161 (185)
19 PLN02399 phospholipid hydroper 99.8 7.4E-18 1.6E-22 158.7 13.0 134 318-468 77-235 (236)
20 PLN02412 probable glutathione 99.7 6.3E-18 1.4E-22 153.0 11.2 116 319-437 8-148 (167)
21 cd02969 PRX_like1 Peroxiredoxi 99.7 1.6E-17 3.4E-22 151.6 13.9 144 320-471 4-156 (171)
22 KOG0191 Thioredoxin/protein di 99.7 1.7E-17 3.8E-22 170.8 15.8 300 20-427 47-352 (383)
23 PRK03147 thiol-disulfide oxido 99.7 1.9E-17 4E-22 151.6 14.3 115 319-436 40-155 (173)
24 PTZ00056 glutathione peroxidas 99.7 1.1E-17 2.3E-22 155.5 12.5 117 318-437 17-162 (199)
25 PF00578 AhpC-TSA: AhpC/TSA fa 99.7 1.8E-17 3.9E-22 142.8 10.6 113 319-435 4-124 (124)
26 PF13905 Thioredoxin_8: Thiore 99.7 4.4E-17 9.6E-22 133.3 12.2 92 20-112 1-95 (95)
27 cd00340 GSH_Peroxidase Glutath 99.7 8.9E-18 1.9E-22 150.0 8.6 114 321-438 3-141 (152)
28 TIGR00385 dsbE periplasmic pro 99.7 4.1E-17 8.9E-22 148.9 12.2 114 318-438 38-156 (173)
29 PRK00522 tpx lipid hydroperoxi 99.7 6.2E-17 1.3E-21 146.6 12.0 114 319-437 23-148 (167)
30 cd03012 TlpA_like_DipZ_like Tl 99.7 5.9E-17 1.3E-21 139.9 11.0 106 7-115 10-121 (126)
31 TIGR02661 MauD methylamine deh 99.7 1.7E-16 3.7E-21 146.7 14.5 126 319-464 51-179 (189)
32 cd03017 PRX_BCP Peroxiredoxin 99.7 8.3E-17 1.8E-21 141.9 11.3 114 320-437 3-127 (140)
33 PTZ00256 glutathione peroxidas 99.7 1.5E-16 3.3E-21 146.3 13.2 116 319-437 19-165 (183)
34 PRK09437 bcp thioredoxin-depen 99.7 1.4E-16 3.1E-21 142.8 12.5 114 319-436 9-136 (154)
35 cd03014 PRX_Atyp2cys Peroxired 99.7 1.2E-16 2.5E-21 141.5 11.6 115 319-438 5-128 (143)
36 TIGR02540 gpx7 putative glutat 99.7 9.9E-17 2.1E-21 143.4 10.9 113 322-437 4-137 (153)
37 cd03015 PRX_Typ2cys Peroxiredo 99.7 1.5E-16 3.3E-21 145.3 12.1 136 319-467 4-157 (173)
38 cd02966 TlpA_like_family TlpA- 99.7 2.4E-16 5.2E-21 133.4 11.8 110 323-435 2-113 (116)
39 TIGR01626 ytfJ_HI0045 conserve 99.7 2.5E-16 5.3E-21 142.0 11.9 123 327-467 47-183 (184)
40 TIGR03137 AhpC peroxiredoxin. 99.7 2.1E-16 4.4E-21 145.9 11.5 135 318-465 6-154 (187)
41 cd02967 mauD Methylamine utili 99.7 5.3E-16 1.2E-20 131.5 12.5 102 8-115 8-111 (114)
42 cd03018 PRX_AhpE_like Peroxire 99.7 4.9E-16 1.1E-20 138.5 12.8 115 320-438 7-132 (149)
43 PRK10382 alkyl hydroperoxide r 99.7 6E-16 1.3E-20 141.6 12.2 137 317-466 5-155 (187)
44 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 4.4E-16 9.6E-21 133.9 10.6 107 321-436 1-109 (123)
45 cd02971 PRX_family Peroxiredox 99.7 8.2E-16 1.8E-20 135.5 11.8 117 320-439 2-129 (140)
46 COG1225 Bcp Peroxiredoxin [Pos 99.7 1.3E-15 2.9E-20 132.2 12.6 115 318-436 8-136 (157)
47 TIGR02187 GlrX_arch Glutaredox 99.6 9.9E-15 2.1E-19 138.0 19.1 173 179-431 20-197 (215)
48 PF08534 Redoxin: Redoxin; In 99.6 1.3E-15 2.9E-20 135.2 12.4 104 8-115 16-130 (146)
49 cd02968 SCO SCO (an acronym fo 99.6 1E-15 2.3E-20 135.2 10.4 115 320-435 2-139 (142)
50 TIGR02187 GlrX_arch Glutaredox 99.6 3.2E-15 6.9E-20 141.3 14.0 175 17-267 16-194 (215)
51 PRK13190 putative peroxiredoxi 99.6 2E-15 4.4E-20 140.8 12.1 136 319-467 7-154 (202)
52 cd03010 TlpA_like_DsbE TlpA-li 99.6 2.3E-15 4.9E-20 130.3 10.8 99 11-115 16-116 (127)
53 PRK13599 putative peroxiredoxi 99.6 2.5E-15 5.4E-20 140.9 11.7 139 316-466 4-155 (215)
54 PRK13728 conjugal transfer pro 99.6 2.2E-15 4.7E-20 134.9 10.7 95 319-434 54-151 (181)
55 PRK15412 thiol:disulfide inter 99.6 3E-15 6.4E-20 138.1 11.6 99 10-115 57-158 (185)
56 cd02970 PRX_like2 Peroxiredoxi 99.6 3E-15 6.5E-20 133.4 11.2 114 320-437 2-147 (149)
57 cd02950 TxlA TRX-like protein 99.6 8.2E-15 1.8E-19 128.6 11.6 98 338-473 19-116 (142)
58 PRK15000 peroxidase; Provision 99.6 6.6E-15 1.4E-19 136.7 11.7 137 318-466 6-161 (200)
59 PLN02919 haloacid dehalogenase 99.6 8.8E-15 1.9E-19 167.2 14.8 116 319-437 396-520 (1057)
60 cd00340 GSH_Peroxidase Glutath 99.6 2.5E-15 5.5E-20 134.1 8.0 106 8-115 10-138 (152)
61 PTZ00137 2-Cys peroxiredoxin; 99.6 1.1E-14 2.5E-19 138.9 12.7 137 317-466 71-224 (261)
62 PTZ00056 glutathione peroxidas 99.6 1.7E-14 3.7E-19 134.0 13.2 107 8-115 27-160 (199)
63 KOG0191 Thioredoxin/protein di 99.6 4.7E-14 1E-18 145.4 17.7 184 178-431 46-230 (383)
64 PRK13191 putative peroxiredoxi 99.6 1.2E-14 2.6E-19 136.4 12.0 138 317-467 10-161 (215)
65 PLN02399 phospholipid hydroper 99.6 1.1E-14 2.3E-19 137.3 10.9 107 8-115 87-216 (236)
66 cd03016 PRX_1cys Peroxiredoxin 99.6 1.8E-14 3.8E-19 134.8 12.2 135 319-467 4-154 (203)
67 PRK03147 thiol-disulfide oxido 99.6 4.3E-14 9.4E-19 129.3 13.8 105 8-115 49-154 (173)
68 PLN02412 probable glutathione 99.6 9.1E-15 2E-19 132.3 9.1 106 8-115 17-146 (167)
69 PTZ00253 tryparedoxin peroxida 99.6 3.4E-14 7.4E-19 132.5 12.4 136 318-466 10-163 (199)
70 cd02985 TRX_CDSP32 TRX family, 99.6 2.5E-14 5.5E-19 118.6 10.0 75 337-436 13-87 (103)
71 cd02954 DIM1 Dim1 family; Dim1 99.5 3.4E-14 7.4E-19 117.5 10.3 72 339-437 14-85 (114)
72 PRK14018 trifunctional thiored 99.5 7.9E-14 1.7E-18 145.2 14.9 103 8-115 46-155 (521)
73 TIGR02540 gpx7 putative glutat 99.5 2.2E-14 4.8E-19 128.2 8.9 107 8-115 10-135 (153)
74 cd02966 TlpA_like_family TlpA- 99.5 9.1E-14 2E-18 117.4 11.9 105 8-115 7-113 (116)
75 PF00578 AhpC-TSA: AhpC/TSA fa 99.5 5.9E-14 1.3E-18 120.8 10.6 103 8-114 13-123 (124)
76 TIGR02661 MauD methylamine deh 99.5 1.7E-13 3.8E-18 126.6 14.4 100 8-115 60-162 (189)
77 cd02969 PRX_like1 Peroxiredoxi 99.5 8.6E-14 1.9E-18 127.0 11.9 106 8-116 12-126 (171)
78 PRK13189 peroxiredoxin; Provis 99.5 1.3E-13 2.9E-18 130.1 12.6 135 318-466 13-162 (222)
79 PHA02278 thioredoxin-like prot 99.5 1E-13 2.3E-18 113.9 10.0 77 338-437 13-89 (103)
80 TIGR00385 dsbE periplasmic pro 99.5 7E-14 1.5E-18 127.6 9.6 97 12-115 54-153 (173)
81 TIGR02738 TrbB type-F conjugat 99.5 7.1E-14 1.5E-18 123.3 9.1 87 328-434 43-133 (153)
82 KOG0910 Thioredoxin-like prote 99.5 8.7E-14 1.9E-18 118.4 8.9 72 339-437 61-132 (150)
83 PTZ00256 glutathione peroxidas 99.5 1E-13 2.2E-18 127.5 9.6 107 8-115 28-163 (183)
84 cd02985 TRX_CDSP32 TRX family, 99.5 1.5E-13 3.4E-18 113.8 9.7 75 16-115 11-86 (103)
85 cd02954 DIM1 Dim1 family; Dim1 99.5 1.9E-13 4.2E-18 113.1 10.0 70 19-115 13-83 (114)
86 PRK00522 tpx lipid hydroperoxi 99.5 2.5E-13 5.3E-18 123.0 11.0 103 8-115 32-146 (167)
87 cd02948 TRX_NDPK TRX domain, T 99.5 2E-13 4.4E-18 113.0 9.6 71 339-436 17-87 (102)
88 PRK10606 btuE putative glutath 99.5 6.2E-13 1.4E-17 120.9 13.5 80 321-404 6-94 (183)
89 cd03018 PRX_AhpE_like Peroxire 99.5 4.8E-13 1E-17 119.2 12.6 106 8-115 15-129 (149)
90 PRK13728 conjugal transfer pro 99.5 2.5E-13 5.5E-18 121.7 9.8 88 8-114 61-151 (181)
91 cd02950 TxlA TRX-like protein 99.5 2.4E-13 5.1E-18 119.3 9.3 80 12-115 12-92 (142)
92 cd03017 PRX_BCP Peroxiredoxin 99.5 3.8E-13 8.3E-18 118.4 10.7 104 8-115 11-125 (140)
93 cd02999 PDI_a_ERp44_like PDIa 99.5 3E-13 6.5E-18 111.2 9.0 68 16-111 14-83 (100)
94 TIGR01626 ytfJ_HI0045 conserve 99.5 2.8E-13 6.2E-18 122.2 9.5 98 11-115 50-162 (184)
95 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 4.7E-13 1E-17 115.0 10.4 98 8-114 8-107 (123)
96 KOG0910 Thioredoxin-like prote 99.4 2.5E-13 5.5E-18 115.5 8.2 69 20-115 61-130 (150)
97 cd02999 PDI_a_ERp44_like PDIa 99.4 4.1E-13 9E-18 110.4 8.9 68 335-429 14-82 (100)
98 cd02963 TRX_DnaJ TRX domain, D 99.4 4E-13 8.8E-18 112.9 9.0 72 338-435 23-94 (111)
99 PHA02278 thioredoxin-like prot 99.4 5.8E-13 1.3E-17 109.5 9.4 74 19-115 13-87 (103)
100 cd03014 PRX_Atyp2cys Peroxired 99.4 7.6E-13 1.7E-17 117.0 10.3 103 8-115 14-125 (143)
101 KOG0907 Thioredoxin [Posttrans 99.4 4.4E-13 9.6E-18 110.2 7.9 70 339-436 21-90 (106)
102 cd03015 PRX_Typ2cys Peroxiredo 99.4 2.2E-12 4.8E-17 117.8 13.2 101 11-115 20-135 (173)
103 cd02956 ybbN ybbN protein fami 99.4 1.4E-12 3E-17 106.8 10.6 71 338-435 11-81 (96)
104 cd02968 SCO SCO (an acronym fo 99.4 8E-13 1.7E-17 116.7 9.7 108 8-115 10-139 (142)
105 PLN02919 haloacid dehalogenase 99.4 1.2E-12 2.6E-17 149.8 13.7 104 9-115 408-518 (1057)
106 TIGR03137 AhpC peroxiredoxin. 99.4 1.8E-12 3.9E-17 119.6 12.0 104 8-115 17-134 (187)
107 cd02951 SoxW SoxW family; SoxW 99.4 1.8E-12 4E-17 111.7 11.1 87 338-437 12-103 (125)
108 PRK09437 bcp thioredoxin-depen 99.4 1.7E-12 3.7E-17 116.3 10.5 104 8-115 18-135 (154)
109 cd02948 TRX_NDPK TRX domain, T 99.4 1E-12 2.2E-17 108.8 8.3 70 19-115 16-86 (102)
110 cd02963 TRX_DnaJ TRX domain, D 99.4 2.5E-12 5.5E-17 108.1 10.8 72 18-115 22-94 (111)
111 TIGR02738 TrbB type-F conjugat 99.4 1E-12 2.2E-17 116.0 8.2 78 22-114 53-133 (153)
112 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 1.5E-12 3.3E-17 107.6 8.5 71 338-435 17-87 (101)
113 cd02956 ybbN ybbN protein fami 99.4 4.4E-12 9.6E-17 103.8 11.1 69 19-114 11-80 (96)
114 cd02971 PRX_family Peroxiredox 99.4 3.6E-12 7.8E-17 112.2 10.9 103 9-115 11-125 (140)
115 COG3118 Thioredoxin domain-con 99.4 1.1E-12 2.3E-17 123.9 7.7 82 328-436 32-113 (304)
116 KOG0908 Thioredoxin-like prote 99.4 1.6E-12 3.5E-17 118.2 8.2 123 338-503 20-168 (288)
117 PRK10382 alkyl hydroperoxide r 99.4 8.3E-12 1.8E-16 114.3 12.6 103 9-115 20-134 (187)
118 cd02970 PRX_like2 Peroxiredoxi 99.4 5.3E-12 1.1E-16 112.3 10.9 104 8-115 10-145 (149)
119 cd03006 PDI_a_EFP1_N PDIa fami 99.3 3.8E-12 8.2E-17 106.5 9.1 70 338-434 28-98 (113)
120 cd03006 PDI_a_EFP1_N PDIa fami 99.3 5.6E-12 1.2E-16 105.4 9.7 68 19-113 28-97 (113)
121 COG3118 Thioredoxin domain-con 99.3 4.2E-12 9E-17 119.9 9.8 69 19-114 42-111 (304)
122 PRK09381 trxA thioredoxin; Pro 99.3 8.9E-12 1.9E-16 104.6 10.9 71 339-436 21-91 (109)
123 TIGR02740 TraF-like TraF-like 99.3 3.1E-12 6.7E-17 124.3 9.2 87 331-434 158-244 (271)
124 cd02953 DsbDgamma DsbD gamma f 99.3 6.6E-12 1.4E-16 104.4 9.8 77 338-436 10-90 (104)
125 cd03003 PDI_a_ERdj5_N PDIa fam 99.3 5.4E-12 1.2E-16 104.3 9.2 68 19-113 17-85 (101)
126 cd02962 TMX2 TMX2 family; comp 99.3 8.5E-12 1.8E-16 109.8 10.8 92 19-136 46-144 (152)
127 cd02986 DLP Dim1 family, Dim1- 99.3 6E-12 1.3E-16 103.2 9.1 73 338-437 13-85 (114)
128 cd02962 TMX2 TMX2 family; comp 99.3 8.8E-12 1.9E-16 109.7 10.6 92 339-456 47-144 (152)
129 PLN00410 U5 snRNP protein, DIM 99.3 9.2E-12 2E-16 107.2 10.4 72 338-436 22-95 (142)
130 KOG0907 Thioredoxin [Posttrans 99.3 3.7E-12 8E-17 104.7 7.6 72 16-115 17-89 (106)
131 cd02959 ERp19 Endoplasmic reti 99.3 5.4E-12 1.2E-16 106.8 8.0 73 338-435 18-92 (117)
132 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 9.9E-12 2.1E-16 103.3 9.3 71 339-435 19-89 (104)
133 COG0450 AhpC Peroxiredoxin [Po 99.3 1.9E-11 4.2E-16 108.5 11.4 139 316-467 5-161 (194)
134 cd03013 PRX5_like Peroxiredoxi 99.3 1.3E-11 2.8E-16 110.2 10.3 115 319-437 4-138 (155)
135 cd02994 PDI_a_TMX PDIa family, 99.3 1.6E-11 3.5E-16 101.5 10.1 69 19-113 16-84 (101)
136 PTZ00062 glutaredoxin; Provisi 99.3 3.4E-11 7.3E-16 110.9 12.9 60 20-115 18-77 (204)
137 PRK10996 thioredoxin 2; Provis 99.3 2.7E-11 5.8E-16 106.1 11.7 70 339-435 52-121 (139)
138 cd03000 PDI_a_TMX3 PDIa family 99.3 3.9E-11 8.5E-16 99.7 12.0 70 339-432 15-84 (104)
139 cd03065 PDI_b_Calsequestrin_N 99.3 9.8E-12 2.1E-16 104.7 7.8 71 339-434 27-101 (120)
140 PF02630 SCO1-SenC: SCO1/SenC; 99.3 3.4E-11 7.3E-16 109.6 11.9 118 318-435 30-170 (174)
141 PF13098 Thioredoxin_2: Thiore 99.3 1.7E-11 3.7E-16 103.4 9.0 95 338-435 4-98 (112)
142 cd02996 PDI_a_ERp44 PDIa famil 99.3 1.8E-11 4E-16 102.4 9.1 70 19-113 17-91 (108)
143 cd02994 PDI_a_TMX PDIa family, 99.3 3E-11 6.5E-16 99.8 10.2 68 338-432 16-83 (101)
144 PRK09381 trxA thioredoxin; Pro 99.3 3.9E-11 8.5E-16 100.6 10.9 69 20-115 21-90 (109)
145 KOG4277 Uncharacterized conser 99.3 1.6E-10 3.5E-15 107.7 15.6 73 22-118 46-118 (468)
146 COG1225 Bcp Peroxiredoxin [Pos 99.3 1.1E-10 2.3E-15 101.8 13.3 105 7-115 17-135 (157)
147 cd02986 DLP Dim1 family, Dim1- 99.3 2.9E-11 6.4E-16 99.2 9.3 69 19-114 13-82 (114)
148 PRK10606 btuE putative glutath 99.2 4.9E-11 1.1E-15 108.6 11.3 71 8-80 13-92 (183)
149 cd02989 Phd_like_TxnDC9 Phosdu 99.2 1.6E-11 3.4E-16 103.4 7.5 69 19-115 21-90 (113)
150 cd02984 TRX_PICOT TRX domain, 99.2 3.1E-11 6.7E-16 98.9 9.1 71 339-436 14-84 (97)
151 cd02951 SoxW SoxW family; SoxW 99.2 4.2E-11 9.1E-16 103.1 10.3 85 18-115 11-101 (125)
152 cd02996 PDI_a_ERp44 PDIa famil 99.2 3.8E-11 8.3E-16 100.5 9.6 71 339-433 18-91 (108)
153 cd02965 HyaE HyaE family; HyaE 99.2 2.4E-11 5.3E-16 99.8 8.2 72 339-437 27-100 (111)
154 cd03000 PDI_a_TMX3 PDIa family 99.2 4.3E-11 9.3E-16 99.4 9.6 68 19-111 14-83 (104)
155 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 4.8E-11 1E-15 99.2 9.9 70 19-114 18-88 (104)
156 PF00085 Thioredoxin: Thioredo 99.2 9.5E-11 2.1E-15 97.0 11.5 68 20-114 17-85 (103)
157 PRK10996 thioredoxin 2; Provis 99.2 1E-10 2.2E-15 102.4 12.1 70 19-115 51-121 (139)
158 cd03005 PDI_a_ERp46 PDIa famil 99.2 3.4E-11 7.3E-16 99.6 8.7 71 341-435 18-88 (102)
159 cd02989 Phd_like_TxnDC9 Phosdu 99.2 5.2E-11 1.1E-15 100.2 9.7 71 339-437 22-92 (113)
160 PF00085 Thioredoxin: Thioredo 99.2 5.6E-11 1.2E-15 98.4 9.8 70 339-435 17-86 (103)
161 cd03002 PDI_a_MPD1_like PDI fa 99.2 3.9E-11 8.4E-16 100.7 8.9 68 19-110 17-85 (109)
162 cd02957 Phd_like Phosducin (Ph 99.2 4.8E-11 1E-15 100.7 9.5 67 20-115 24-91 (113)
163 cd02955 SSP411 TRX domain, SSP 99.2 1.4E-10 3E-15 98.5 12.2 105 338-466 14-121 (124)
164 cd02953 DsbDgamma DsbD gamma f 99.2 4.1E-11 8.8E-16 99.6 8.8 75 19-115 10-89 (104)
165 cd03002 PDI_a_MPD1_like PDI fa 99.2 3.9E-11 8.4E-16 100.7 8.6 69 339-431 18-86 (109)
166 cd02993 PDI_a_APS_reductase PD 99.2 4.9E-11 1.1E-15 100.0 9.1 73 338-434 20-93 (109)
167 PRK13190 putative peroxiredoxi 99.2 7.8E-11 1.7E-15 109.9 11.4 102 11-115 18-132 (202)
168 PRK13599 putative peroxiredoxi 99.2 1.1E-10 2.3E-15 109.6 11.9 104 9-115 17-134 (215)
169 cd02993 PDI_a_APS_reductase PD 99.2 7.1E-11 1.5E-15 99.0 9.4 69 19-111 20-90 (109)
170 PTZ00137 2-Cys peroxiredoxin; 99.2 1.3E-10 2.8E-15 111.2 12.3 101 11-115 88-203 (261)
171 cd02957 Phd_like Phosducin (Ph 99.2 4.2E-11 9.2E-16 101.0 8.0 70 339-437 24-93 (113)
172 PLN00410 U5 snRNP protein, DIM 99.2 1.6E-10 3.4E-15 99.6 11.5 82 6-114 7-93 (142)
173 PTZ00443 Thioredoxin domain-co 99.2 1.2E-10 2.7E-15 109.1 11.6 70 339-435 52-121 (224)
174 cd02949 TRX_NTR TRX domain, no 99.2 1.3E-10 2.8E-15 95.2 10.3 71 339-436 13-83 (97)
175 cd02997 PDI_a_PDIR PDIa family 99.2 8.7E-11 1.9E-15 97.5 9.3 73 19-114 16-89 (104)
176 cd03005 PDI_a_ERp46 PDIa famil 99.2 9.6E-11 2.1E-15 96.9 9.3 69 21-114 18-87 (102)
177 PRK15000 peroxidase; Provision 99.2 2.2E-10 4.8E-15 106.5 12.6 99 13-115 26-140 (200)
178 TIGR01126 pdi_dom protein disu 99.2 9.4E-11 2E-15 96.9 9.0 70 338-431 12-81 (102)
179 PTZ00062 glutaredoxin; Provisi 99.2 5.7E-11 1.2E-15 109.5 8.3 107 340-497 18-129 (204)
180 cd03065 PDI_b_Calsequestrin_N 99.2 6.9E-11 1.5E-15 99.5 8.1 69 22-115 30-102 (120)
181 PTZ00051 thioredoxin; Provisio 99.2 5.2E-11 1.1E-15 97.8 7.3 69 19-115 17-86 (98)
182 cd02959 ERp19 Endoplasmic reti 99.2 2.5E-11 5.5E-16 102.7 5.5 78 13-115 12-92 (117)
183 cd03016 PRX_1cys Peroxiredoxin 99.2 2.6E-10 5.7E-15 106.6 12.6 101 11-115 15-132 (203)
184 cd02992 PDI_a_QSOX PDIa family 99.2 1.2E-10 2.7E-15 98.2 9.3 72 20-114 19-92 (114)
185 PTZ00443 Thioredoxin domain-co 99.2 2.5E-10 5.3E-15 107.1 11.9 69 20-115 52-121 (224)
186 cd02952 TRP14_like Human TRX-r 99.2 9E-11 2E-15 98.5 8.0 79 338-435 20-106 (119)
187 TIGR01126 pdi_dom protein disu 99.2 1.7E-10 3.8E-15 95.3 9.7 70 19-112 12-82 (102)
188 cd02965 HyaE HyaE family; HyaE 99.2 1.5E-10 3.3E-15 95.1 9.0 68 21-115 29-98 (111)
189 TIGR01068 thioredoxin thioredo 99.2 3E-10 6.4E-15 93.6 10.7 70 339-435 14-83 (101)
190 PTZ00051 thioredoxin; Provisio 99.1 1.7E-10 3.6E-15 94.8 8.7 71 339-437 18-88 (98)
191 cd02992 PDI_a_QSOX PDIa family 99.1 2.4E-10 5.3E-15 96.3 9.8 75 339-435 19-93 (114)
192 cd02984 TRX_PICOT TRX domain, 99.1 2.5E-10 5.4E-15 93.5 9.6 69 20-115 14-83 (97)
193 cd02997 PDI_a_PDIR PDIa family 99.1 2.2E-10 4.7E-15 95.1 9.3 74 339-435 17-90 (104)
194 COG1999 Uncharacterized protei 99.1 7.7E-10 1.7E-14 103.1 13.7 133 322-468 49-205 (207)
195 PTZ00253 tryparedoxin peroxida 99.1 4.5E-10 9.7E-15 104.8 11.9 103 9-115 25-142 (199)
196 cd02949 TRX_NTR TRX domain, no 99.1 3.7E-10 8E-15 92.5 9.8 70 19-115 12-82 (97)
197 TIGR02740 TraF-like TraF-like 99.1 7.8E-11 1.7E-15 114.5 6.7 86 11-113 157-243 (271)
198 TIGR01295 PedC_BrcD bacterioci 99.1 4.4E-10 9.6E-15 95.7 10.5 74 339-437 23-107 (122)
199 cd02987 Phd_like_Phd Phosducin 99.1 5.2E-10 1.1E-14 101.5 11.0 88 20-141 83-172 (175)
200 PF13098 Thioredoxin_2: Thiore 99.1 1.8E-10 4E-15 97.0 7.2 91 19-115 4-98 (112)
201 TIGR01295 PedC_BrcD bacterioci 99.1 5.2E-10 1.1E-14 95.3 9.9 92 6-115 4-105 (122)
202 cd02998 PDI_a_ERp38 PDIa famil 99.1 4.6E-10 1E-14 93.3 9.2 67 20-110 18-86 (105)
203 cd02975 PfPDO_like_N Pyrococcu 99.1 8.7E-10 1.9E-14 92.8 10.8 64 339-429 22-85 (113)
204 PRK13191 putative peroxiredoxi 99.1 8.3E-10 1.8E-14 103.7 11.7 101 12-115 24-139 (215)
205 PRK13189 peroxiredoxin; Provis 99.1 9.6E-10 2.1E-14 103.9 12.2 100 12-115 26-141 (222)
206 cd02987 Phd_like_Phd Phosducin 99.1 8E-10 1.7E-14 100.3 10.9 88 339-459 83-170 (175)
207 KOG0912 Thiol-disulfide isomer 99.1 2.7E-09 5.9E-14 100.1 14.3 73 20-115 13-87 (375)
208 TIGR01068 thioredoxin thioredo 99.1 1.6E-09 3.5E-14 89.2 11.6 68 20-114 14-82 (101)
209 cd03001 PDI_a_P5 PDIa family, 99.1 6.9E-10 1.5E-14 91.9 9.3 65 339-429 18-82 (103)
210 cd03001 PDI_a_P5 PDIa family, 99.1 1.1E-09 2.4E-14 90.6 9.9 64 20-110 18-82 (103)
211 cd02998 PDI_a_ERp38 PDIa famil 99.1 7.5E-10 1.6E-14 92.0 8.7 72 339-434 18-90 (105)
212 cd02952 TRP14_like Human TRX-r 99.0 6.7E-10 1.5E-14 93.2 7.7 78 18-114 19-105 (119)
213 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.6E-09 3.5E-14 89.8 9.7 66 20-110 18-84 (104)
214 cd02975 PfPDO_like_N Pyrococcu 99.0 1.4E-09 3.1E-14 91.5 9.3 62 20-108 22-84 (113)
215 KOG2792 Putative cytochrome C 99.0 3.3E-09 7.1E-14 97.6 11.5 118 322-439 121-261 (280)
216 cd02961 PDI_a_family Protein D 99.0 1.7E-09 3.8E-14 88.7 8.7 73 339-435 15-87 (101)
217 cd02961 PDI_a_family Protein D 99.0 3.1E-09 6.8E-14 87.2 9.5 68 19-110 14-82 (101)
218 TIGR00411 redox_disulf_1 small 99.0 4.5E-09 9.7E-14 83.0 9.8 63 342-433 2-64 (82)
219 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 2.1E-09 4.6E-14 89.1 7.7 67 339-430 18-84 (104)
220 TIGR00424 APS_reduc 5'-adenyly 98.9 4.3E-09 9.4E-14 108.6 10.6 70 337-429 369-438 (463)
221 PTZ00102 disulphide isomerase; 98.9 2.4E-08 5.2E-13 106.7 16.8 185 30-272 258-444 (477)
222 KOG0908 Thioredoxin-like prote 98.9 1.4E-09 3.1E-14 99.2 6.1 73 14-114 15-88 (288)
223 cd02960 AGR Anterior Gradient 98.9 4.6E-09 1E-13 89.0 8.8 99 338-467 22-123 (130)
224 cd02988 Phd_like_VIAF Phosduci 98.9 6.1E-09 1.3E-13 95.8 10.2 87 339-460 102-188 (192)
225 cd02955 SSP411 TRX domain, SSP 98.9 1E-08 2.2E-13 87.1 10.8 85 14-116 9-97 (124)
226 cd02988 Phd_like_VIAF Phosduci 98.9 6.4E-09 1.4E-13 95.6 10.0 87 19-141 101-189 (192)
227 TIGR00424 APS_reduc 5'-adenyly 98.9 3.4E-09 7.4E-14 109.4 9.0 68 19-110 370-438 (463)
228 PLN02309 5'-adenylylsulfate re 98.9 1.1E-08 2.3E-13 105.8 10.9 69 338-430 364-433 (457)
229 PRK00293 dipZ thiol:disulfide 98.8 1.5E-08 3.3E-13 109.1 10.8 75 336-433 471-548 (571)
230 TIGR00411 redox_disulf_1 small 98.8 2.9E-08 6.2E-13 78.4 9.3 61 23-112 3-63 (82)
231 KOG0190 Protein disulfide isom 98.8 1.6E-08 3.5E-13 103.7 9.8 70 339-432 42-111 (493)
232 cd02947 TRX_family TRX family; 98.8 2.3E-08 4.9E-13 80.4 8.6 66 21-114 11-77 (93)
233 cd02947 TRX_family TRX family; 98.8 3.4E-08 7.3E-13 79.4 9.4 69 339-435 10-78 (93)
234 PLN02309 5'-adenylylsulfate re 98.8 1.7E-08 3.7E-13 104.3 9.2 65 19-107 364-430 (457)
235 cd03013 PRX5_like Peroxiredoxi 98.8 4.3E-08 9.4E-13 87.4 9.7 102 9-115 17-136 (155)
236 KOG0912 Thiol-disulfide isomer 98.7 3.7E-08 8.1E-13 92.6 9.1 95 339-468 13-107 (375)
237 cd02982 PDI_b'_family Protein 98.7 5E-08 1.1E-12 80.7 9.0 64 339-428 12-77 (103)
238 PHA02125 thioredoxin-like prot 98.7 4.4E-08 9.5E-13 75.8 8.1 57 343-435 2-58 (75)
239 PRK00293 dipZ thiol:disulfide 98.7 2.7E-08 5.8E-13 107.3 9.1 75 16-113 470-548 (571)
240 cd02973 TRX_GRX_like Thioredox 98.7 5.7E-08 1.2E-12 73.4 8.4 62 23-114 3-64 (67)
241 KOG0852 Alkyl hydroperoxide re 98.7 6.4E-08 1.4E-12 83.7 9.5 112 324-437 18-141 (196)
242 TIGR00412 redox_disulf_2 small 98.7 5.1E-08 1.1E-12 75.6 7.8 61 343-435 2-62 (76)
243 COG0386 BtuE Glutathione perox 98.7 2.1E-07 4.6E-12 79.2 12.0 114 321-437 6-144 (162)
244 KOG4277 Uncharacterized conser 98.7 1.3E-08 2.8E-13 95.2 4.8 77 339-438 43-119 (468)
245 TIGR01130 ER_PDI_fam protein d 98.7 5.5E-07 1.2E-11 95.8 18.0 186 26-271 242-431 (462)
246 KOG0855 Alkyl hydroperoxide re 98.7 5.3E-08 1.1E-12 83.2 7.7 109 319-431 68-186 (211)
247 TIGR00412 redox_disulf_2 small 98.7 8.1E-08 1.8E-12 74.5 8.1 60 23-114 2-61 (76)
248 PF02630 SCO1-SenC: SCO1/SenC; 98.7 1.5E-07 3.2E-12 85.7 11.0 108 8-115 40-170 (174)
249 cd02973 TRX_GRX_like Thioredox 98.7 7.8E-08 1.7E-12 72.7 7.5 63 343-435 3-65 (67)
250 cd03007 PDI_a_ERp29_N PDIa fam 98.7 8.1E-08 1.8E-12 80.0 7.5 63 19-110 17-90 (116)
251 PHA02125 thioredoxin-like prot 98.7 1.1E-07 2.5E-12 73.5 7.9 56 23-114 2-57 (75)
252 cd02960 AGR Anterior Gradient 98.6 1.3E-07 2.8E-12 80.2 8.6 98 14-142 17-118 (130)
253 cd02958 UAS UAS family; UAS is 98.6 7E-07 1.5E-11 75.3 11.2 75 338-436 16-94 (114)
254 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 3E-07 6.5E-12 73.5 7.5 71 335-435 8-78 (89)
255 cd02982 PDI_b'_family Protein 98.5 4.8E-07 1E-11 74.8 9.1 86 178-301 11-100 (103)
256 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 4E-07 8.6E-12 72.8 7.9 71 15-115 7-78 (89)
257 cd03007 PDI_a_ERp29_N PDIa fam 98.5 7.8E-07 1.7E-11 74.1 8.3 69 339-430 18-90 (116)
258 PF13899 Thioredoxin_7: Thiore 98.4 6.5E-07 1.4E-11 70.6 7.2 64 338-428 16-82 (82)
259 PF07649 C1_3: C1-like domain; 98.4 6.7E-08 1.5E-12 59.8 0.5 28 492-519 2-30 (30)
260 KOG1731 FAD-dependent sulfhydr 98.3 2E-07 4.4E-12 95.4 2.5 66 22-109 60-126 (606)
261 KOG1731 FAD-dependent sulfhydr 98.3 4.2E-07 9.1E-12 93.1 4.7 69 340-429 58-126 (606)
262 KOG1651 Glutathione peroxidase 98.3 5.9E-06 1.3E-10 71.5 10.9 115 321-437 15-153 (171)
263 PF13728 TraF: F plasmid trans 98.3 2.1E-06 4.6E-11 80.5 8.5 84 335-435 116-199 (215)
264 COG1999 Uncharacterized protei 98.3 8.5E-06 1.8E-10 76.1 12.2 109 7-115 54-186 (207)
265 cd02958 UAS UAS family; UAS is 98.3 2.2E-06 4.8E-11 72.3 7.2 79 13-115 10-93 (114)
266 COG2077 Tpx Peroxiredoxin [Pos 98.2 1.2E-05 2.6E-10 68.4 10.5 118 319-441 23-152 (158)
267 COG0450 AhpC Peroxiredoxin [Po 98.2 5.6E-06 1.2E-10 74.1 8.9 102 11-115 24-139 (194)
268 TIGR02739 TraF type-F conjugat 98.2 6.5E-06 1.4E-10 78.6 9.5 84 335-435 146-229 (256)
269 PF13899 Thioredoxin_7: Thiore 98.2 4.3E-06 9.3E-11 65.9 6.6 48 15-64 12-63 (82)
270 PRK13703 conjugal pilus assemb 98.2 8.6E-06 1.9E-10 77.2 9.0 83 336-435 140-222 (248)
271 smart00594 UAS UAS domain. 98.1 1.7E-05 3.8E-10 67.6 8.9 69 338-430 26-97 (122)
272 KOG2792 Putative cytochrome C 98.1 2.1E-05 4.5E-10 72.9 9.8 108 8-115 127-257 (280)
273 PF14595 Thioredoxin_9: Thiore 98.1 9E-06 2E-10 69.7 6.7 75 336-437 38-115 (129)
274 smart00594 UAS UAS domain. 98.1 2.1E-05 4.5E-10 67.2 8.9 72 15-110 22-97 (122)
275 COG0526 TrxA Thiol-disulfide i 98.0 2E-05 4.4E-10 65.9 8.3 65 16-106 28-96 (127)
276 PF13728 TraF: F plasmid trans 98.0 1.2E-05 2.7E-10 75.4 7.4 81 15-112 115-196 (215)
277 COG0526 TrxA Thiol-disulfide i 98.0 1.9E-05 4.1E-10 66.1 8.0 67 334-426 27-96 (127)
278 PF00255 GSHPx: Glutathione pe 98.0 3.7E-05 7.9E-10 63.3 9.0 60 322-384 3-63 (108)
279 TIGR03143 AhpF_homolog putativ 98.0 0.0001 2.2E-09 80.1 15.2 178 177-435 364-542 (555)
280 KOG0854 Alkyl hydroperoxide re 98.0 4.5E-05 9.8E-10 66.2 9.6 138 318-468 10-169 (224)
281 cd01659 TRX_superfamily Thiore 98.0 3.1E-05 6.6E-10 56.9 7.8 63 343-429 1-63 (69)
282 PF14595 Thioredoxin_9: Thiore 98.0 9.5E-06 2.1E-10 69.5 5.4 74 15-115 36-113 (129)
283 PF03190 Thioredox_DsbH: Prote 97.9 6.2E-05 1.3E-09 66.4 9.3 107 339-470 37-147 (163)
284 PF03107 C1_2: C1 domain; Int 97.9 6.6E-06 1.4E-10 50.8 2.2 29 491-519 1-30 (30)
285 TIGR03143 AhpF_homolog putativ 97.9 0.00016 3.5E-09 78.5 14.3 174 15-266 361-536 (555)
286 COG0386 BtuE Glutathione perox 97.9 0.0001 2.2E-09 63.1 9.4 105 8-115 13-142 (162)
287 cd01659 TRX_superfamily Thiore 97.9 8E-05 1.7E-09 54.6 8.0 63 23-109 1-63 (69)
288 COG2143 Thioredoxin-related pr 97.9 0.00012 2.6E-09 62.6 9.5 84 338-435 41-131 (182)
289 PF06110 DUF953: Eukaryotic pr 97.8 0.0001 2.2E-09 61.6 8.3 77 339-434 19-104 (119)
290 TIGR02739 TraF type-F conjugat 97.8 5.6E-05 1.2E-09 72.2 7.6 83 14-113 144-227 (256)
291 COG4232 Thiol:disulfide interc 97.8 4.1E-05 8.8E-10 79.9 6.3 77 338-435 473-550 (569)
292 TIGR02196 GlrX_YruB Glutaredox 97.7 0.00022 4.8E-09 54.4 8.8 59 343-432 2-60 (74)
293 PRK13703 conjugal pilus assemb 97.7 5.7E-05 1.2E-09 71.7 6.4 79 15-110 138-217 (248)
294 TIGR02196 GlrX_YruB Glutaredox 97.7 0.0002 4.3E-09 54.6 8.4 55 23-105 2-56 (74)
295 PF13848 Thioredoxin_6: Thiore 97.7 0.0014 3.1E-08 60.0 15.6 171 37-301 8-183 (184)
296 TIGR02200 GlrX_actino Glutared 97.7 0.00016 3.5E-09 55.9 7.5 63 23-115 2-65 (77)
297 KOG1651 Glutathione peroxidase 97.6 0.00042 9E-09 60.2 9.5 107 8-115 22-151 (171)
298 TIGR02180 GRX_euk Glutaredoxin 97.6 0.0002 4.4E-09 56.4 7.2 65 23-113 1-65 (84)
299 TIGR02200 GlrX_actino Glutared 97.6 0.00031 6.7E-09 54.3 7.7 63 343-435 2-65 (77)
300 COG4232 Thiol:disulfide interc 97.6 0.0001 2.3E-09 76.9 6.3 77 16-113 470-548 (569)
301 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00017 3.6E-09 56.9 6.2 65 343-433 1-65 (84)
302 PRK11657 dsbG disulfide isomer 97.6 0.0013 2.7E-08 63.6 13.2 93 338-435 116-235 (251)
303 PRK11509 hydrogenase-1 operon 97.6 0.00077 1.7E-08 57.4 10.2 89 341-469 36-126 (132)
304 KOG0855 Alkyl hydroperoxide re 97.5 0.00033 7.2E-09 60.4 7.3 99 8-110 77-185 (211)
305 COG2143 Thioredoxin-related pr 97.5 0.00039 8.4E-09 59.5 7.3 92 11-115 33-131 (182)
306 PF00837 T4_deiodinase: Iodoth 97.5 0.00043 9.4E-09 64.5 8.0 118 317-440 76-221 (237)
307 KOG0914 Thioredoxin-like prote 97.4 0.00016 3.5E-09 65.2 4.6 88 22-136 147-240 (265)
308 KOG0914 Thioredoxin-like prote 97.4 0.00023 5E-09 64.3 5.2 91 339-457 144-241 (265)
309 KOG0911 Glutaredoxin-related p 97.4 0.00013 2.8E-09 66.7 3.7 125 338-498 16-156 (227)
310 PF03190 Thioredox_DsbH: Prote 97.3 0.00088 1.9E-08 59.2 8.0 84 14-115 31-118 (163)
311 KOG0852 Alkyl hydroperoxide re 97.3 0.00067 1.4E-08 59.3 7.0 103 10-115 23-139 (196)
312 PF13192 Thioredoxin_3: Thiore 97.2 0.0044 9.6E-08 47.8 9.9 60 24-115 3-62 (76)
313 PF06110 DUF953: Eukaryotic pr 97.2 0.0017 3.6E-08 54.4 7.9 76 19-113 18-103 (119)
314 PF13192 Thioredoxin_3: Thiore 97.2 0.0044 9.5E-08 47.8 9.7 59 346-436 5-63 (76)
315 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.0044 9.5E-08 57.7 11.2 98 10-113 67-184 (197)
316 cd02991 UAS_ETEA UAS family, E 97.1 0.0017 3.6E-08 54.6 7.0 74 14-114 11-94 (116)
317 PF00462 Glutaredoxin: Glutare 97.1 0.0039 8.5E-08 45.5 8.1 55 23-105 1-55 (60)
318 cd02991 UAS_ETEA UAS family, E 97.0 0.0074 1.6E-07 50.7 9.8 73 338-435 16-95 (116)
319 PF00255 GSHPx: Glutathione pe 96.9 0.0061 1.3E-07 50.2 8.8 55 7-63 8-63 (108)
320 PRK11200 grxA glutaredoxin 1; 96.9 0.0037 8.1E-08 49.4 7.3 66 23-114 3-70 (85)
321 PRK11657 dsbG disulfide isomer 96.9 0.0047 1E-07 59.7 9.2 100 11-114 108-234 (251)
322 PRK11509 hydrogenase-1 operon 96.9 0.004 8.6E-08 53.1 7.6 60 30-115 47-106 (132)
323 KOG3425 Uncharacterized conser 96.9 0.0032 7E-08 51.5 6.5 71 339-428 25-104 (128)
324 PF13848 Thioredoxin_6: Thiore 96.9 0.028 6E-07 51.4 13.7 128 250-432 32-164 (184)
325 PRK10877 protein disulfide iso 96.8 0.0078 1.7E-07 57.4 9.8 88 338-433 106-214 (232)
326 cd03020 DsbA_DsbC_DsbG DsbA fa 96.8 0.01 2.2E-07 55.2 10.1 88 339-433 77-184 (197)
327 PRK15317 alkyl hydroperoxide r 96.7 0.077 1.7E-06 57.3 17.8 70 336-435 113-182 (517)
328 PF00462 Glutaredoxin: Glutare 96.7 0.0096 2.1E-07 43.4 7.5 59 343-432 1-59 (60)
329 cd02972 DsbA_family DsbA famil 96.6 0.0057 1.2E-07 49.1 6.4 81 343-427 1-91 (98)
330 COG2077 Tpx Peroxiredoxin [Pos 96.6 0.032 7E-07 47.9 10.7 104 8-116 32-147 (158)
331 cd02976 NrdH NrdH-redoxin (Nrd 96.6 0.022 4.8E-07 42.9 9.1 55 343-425 2-56 (73)
332 PF02114 Phosducin: Phosducin; 96.6 0.0083 1.8E-07 58.1 8.1 70 339-437 146-215 (265)
333 KOG0911 Glutaredoxin-related p 96.6 0.0072 1.6E-07 55.5 7.1 68 19-114 16-84 (227)
334 cd02976 NrdH NrdH-redoxin (Nrd 96.6 0.02 4.4E-07 43.1 8.8 55 23-105 2-56 (73)
335 PRK11200 grxA glutaredoxin 1; 96.5 0.008 1.7E-07 47.5 6.4 66 343-434 3-70 (85)
336 PRK10877 protein disulfide iso 96.5 0.026 5.7E-07 53.8 11.1 95 12-113 99-214 (232)
337 cd03419 GRX_GRXh_1_2_like Glut 96.4 0.0098 2.1E-07 46.4 6.5 63 23-113 2-64 (82)
338 TIGR03140 AhpF alkyl hydropero 96.4 0.2 4.4E-06 54.0 18.5 71 335-435 113-183 (515)
339 PF04592 SelP_N: Selenoprotein 96.4 0.038 8.2E-07 51.3 10.9 103 332-435 19-125 (238)
340 KOG3425 Uncharacterized conser 96.4 0.0085 1.8E-07 49.1 5.7 75 15-108 19-104 (128)
341 cd02972 DsbA_family DsbA famil 96.3 0.019 4E-07 46.0 7.7 83 23-107 1-91 (98)
342 cd03072 PDI_b'_ERp44 PDIb' fam 96.3 0.022 4.9E-07 47.4 8.2 85 180-305 18-109 (111)
343 cd02066 GRX_family Glutaredoxi 96.3 0.035 7.5E-07 41.6 8.5 61 23-114 2-62 (72)
344 cd03419 GRX_GRXh_1_2_like Glut 96.3 0.013 2.8E-07 45.7 6.2 63 343-433 2-64 (82)
345 KOG0913 Thiol-disulfide isomer 96.2 0.00078 1.7E-08 61.9 -1.1 73 20-118 40-112 (248)
346 PF02114 Phosducin: Phosducin; 96.2 0.018 4E-07 55.7 7.8 88 22-142 149-236 (265)
347 cd03073 PDI_b'_ERp72_ERp57 PDI 96.1 0.044 9.5E-07 45.7 9.0 71 193-302 32-109 (111)
348 cd02983 P5_C P5 family, C-term 96.0 0.026 5.7E-07 48.5 7.2 77 195-308 40-119 (130)
349 TIGR02183 GRXA Glutaredoxin, G 95.9 0.027 5.9E-07 44.5 6.3 39 23-64 2-40 (86)
350 cd02066 GRX_family Glutaredoxi 95.7 0.052 1.1E-06 40.6 7.3 61 343-434 2-62 (72)
351 TIGR02190 GlrX-dom Glutaredoxi 95.7 0.047 1E-06 42.3 7.1 60 22-113 9-68 (79)
352 PHA03050 glutaredoxin; Provisi 95.6 0.032 7E-07 46.2 6.0 65 22-113 14-80 (108)
353 COG1331 Highly conserved prote 95.5 0.078 1.7E-06 56.9 9.9 78 339-435 43-124 (667)
354 PF05988 DUF899: Bacterial pro 95.5 0.058 1.3E-06 49.5 7.6 110 321-435 47-171 (211)
355 PF04592 SelP_N: Selenoprotein 95.4 0.072 1.6E-06 49.5 8.2 108 7-115 13-125 (238)
356 cd02340 ZZ_NBR1_like Zinc fing 95.4 0.009 1.9E-07 40.2 1.7 30 492-521 2-32 (43)
357 TIGR02181 GRX_bact Glutaredoxi 95.4 0.053 1.2E-06 41.9 6.3 59 24-113 2-60 (79)
358 cd03019 DsbA_DsbA DsbA family, 95.4 0.086 1.9E-06 47.9 8.6 40 19-60 14-54 (178)
359 TIGR02189 GlrX-like_plant Glut 95.3 0.068 1.5E-06 43.5 6.8 64 22-113 9-72 (99)
360 cd03418 GRX_GRXb_1_3_like Glut 95.3 0.092 2E-06 40.0 7.3 60 23-113 2-62 (75)
361 cd03027 GRX_DEP Glutaredoxin ( 95.1 0.11 2.4E-06 39.5 7.1 60 23-113 3-62 (73)
362 PF13462 Thioredoxin_4: Thiore 95.0 0.09 2E-06 46.9 7.6 56 11-66 3-59 (162)
363 PF11009 DUF2847: Protein of u 95.0 0.17 3.6E-06 41.3 8.1 78 339-439 19-97 (105)
364 TIGR02183 GRXA Glutaredoxin, G 94.9 0.07 1.5E-06 42.2 5.7 65 343-433 2-68 (86)
365 KOG3414 Component of the U4/U6 94.9 0.11 2.3E-06 43.1 6.7 84 1-110 1-88 (142)
366 PRK15317 alkyl hydroperoxide r 94.8 0.25 5.5E-06 53.3 11.6 61 178-265 115-175 (517)
367 PRK10329 glutaredoxin-like pro 94.8 0.38 8.3E-06 37.5 9.5 54 343-425 3-56 (81)
368 PHA03050 glutaredoxin; Provisi 94.7 0.068 1.5E-06 44.3 5.4 67 343-434 15-81 (108)
369 cd03023 DsbA_Com1_like DsbA fa 94.7 0.072 1.6E-06 46.9 5.9 40 19-61 4-44 (154)
370 TIGR02190 GlrX-dom Glutaredoxi 94.6 0.13 2.9E-06 39.8 6.6 63 339-433 6-68 (79)
371 cd03029 GRX_hybridPRX5 Glutare 94.6 0.16 3.4E-06 38.5 6.9 59 23-113 3-61 (72)
372 PF09695 YtfJ_HI0045: Bacteria 94.5 0.68 1.5E-05 40.5 11.0 122 328-464 26-158 (160)
373 cd02339 ZZ_Mind_bomb Zinc fing 94.5 0.024 5.2E-07 38.5 1.7 29 492-520 2-32 (45)
374 cd03418 GRX_GRXb_1_3_like Glut 94.4 0.23 4.9E-06 37.8 7.5 60 343-433 2-62 (75)
375 PF13462 Thioredoxin_4: Thiore 94.4 0.15 3.3E-06 45.4 7.5 49 334-383 7-55 (162)
376 PF05176 ATP-synt_10: ATP10 pr 94.3 0.47 1E-05 45.6 10.9 130 321-465 102-251 (252)
377 TIGR02181 GRX_bact Glutaredoxi 94.3 0.16 3.5E-06 39.2 6.5 59 344-433 2-60 (79)
378 PRK10638 glutaredoxin 3; Provi 94.2 0.31 6.8E-06 38.1 8.0 61 23-114 4-64 (83)
379 cd03023 DsbA_Com1_like DsbA fa 94.2 0.092 2E-06 46.2 5.4 40 339-382 5-44 (154)
380 PF11009 DUF2847: Protein of u 94.1 0.13 2.8E-06 42.0 5.5 73 20-115 19-93 (105)
381 TIGR02194 GlrX_NrdH Glutaredox 94.0 0.22 4.8E-06 37.7 6.6 53 24-105 2-54 (72)
382 PRK10329 glutaredoxin-like pro 94.0 0.29 6.4E-06 38.1 7.2 54 23-105 3-56 (81)
383 PF00837 T4_deiodinase: Iodoth 93.9 0.3 6.4E-06 45.9 8.3 123 9-142 88-235 (237)
384 COG0678 AHP1 Peroxiredoxin [Po 93.8 0.43 9.2E-06 41.1 8.3 113 338-461 36-163 (165)
385 TIGR02189 GlrX-like_plant Glut 93.8 0.17 3.7E-06 41.1 5.8 63 343-433 10-72 (99)
386 PRK10954 periplasmic protein d 93.7 0.26 5.6E-06 46.2 7.7 34 18-51 35-72 (207)
387 cd03027 GRX_DEP Glutaredoxin ( 93.7 0.33 7.2E-06 36.8 7.0 61 343-434 3-63 (73)
388 KOG3414 Component of the U4/U6 93.7 0.65 1.4E-05 38.6 8.8 62 339-426 23-84 (142)
389 TIGR00365 monothiol glutaredox 93.6 0.34 7.3E-06 39.2 7.2 61 22-113 14-78 (97)
390 cd03029 GRX_hybridPRX5 Glutare 93.5 0.34 7.3E-06 36.6 6.8 59 343-433 3-61 (72)
391 COG4312 Uncharacterized protei 93.4 0.17 3.8E-06 46.2 5.5 93 321-417 53-153 (247)
392 cd03028 GRX_PICOT_like Glutare 93.3 0.41 9E-06 38.1 7.3 61 22-113 10-74 (90)
393 PF01216 Calsequestrin: Calseq 93.3 5.1 0.00011 39.7 15.8 308 22-470 54-371 (383)
394 KOG1672 ATP binding protein [P 93.3 0.16 3.4E-06 45.7 5.1 71 338-436 83-153 (211)
395 TIGR02194 GlrX_NrdH Glutaredox 92.9 0.46 9.9E-06 35.9 6.7 53 344-425 2-54 (72)
396 PRK10638 glutaredoxin 3; Provi 92.8 0.58 1.3E-05 36.5 7.3 61 343-434 4-64 (83)
397 KOG1672 ATP binding protein [P 92.8 0.21 4.7E-06 44.8 5.2 91 19-140 83-174 (211)
398 cd03031 GRX_GRX_like Glutaredo 92.6 1.6 3.4E-05 38.3 10.4 14 350-363 15-28 (147)
399 KOG0913 Thiol-disulfide isomer 92.6 0.022 4.8E-07 52.6 -1.3 68 341-434 41-108 (248)
400 cd03028 GRX_PICOT_like Glutare 92.3 0.52 1.1E-05 37.5 6.6 64 339-433 7-74 (90)
401 KOG0854 Alkyl hydroperoxide re 92.3 1 2.2E-05 39.8 8.5 101 10-114 21-145 (224)
402 TIGR00365 monothiol glutaredox 92.0 0.61 1.3E-05 37.7 6.6 65 339-434 11-79 (97)
403 COG0695 GrxC Glutaredoxin and 91.9 0.78 1.7E-05 35.6 6.9 20 23-42 3-22 (80)
404 KOG1752 Glutaredoxin and relat 91.6 1.1 2.3E-05 36.7 7.6 64 22-113 15-78 (104)
405 cd03019 DsbA_DsbA DsbA family, 91.3 0.26 5.7E-06 44.6 4.3 41 338-381 14-54 (178)
406 PF02966 DIM1: Mitosis protein 91.3 1.4 2.9E-05 37.3 7.9 58 339-423 20-77 (133)
407 PF02966 DIM1: Mitosis protein 91.1 0.57 1.2E-05 39.5 5.6 76 4-106 2-80 (133)
408 cd02249 ZZ Zinc finger, ZZ typ 90.7 0.16 3.5E-06 34.7 1.7 32 491-522 1-33 (46)
409 PF00130 C1_1: Phorbol esters/ 90.1 0.33 7.1E-06 34.2 3.0 36 488-523 9-47 (53)
410 PF05768 DUF836: Glutaredoxin- 89.8 1.5 3.2E-05 34.1 6.7 56 343-427 2-57 (81)
411 KOG1752 Glutaredoxin and relat 89.6 1.3 2.7E-05 36.3 6.4 63 343-433 16-78 (104)
412 PRK10824 glutaredoxin-4; Provi 89.5 1.3 2.8E-05 37.0 6.5 61 22-113 17-81 (115)
413 KOG2603 Oligosaccharyltransfer 89.5 2 4.3E-05 41.9 8.5 71 178-269 59-136 (331)
414 TIGR03140 AhpF alkyl hydropero 89.4 0.82 1.8E-05 49.3 6.8 64 15-105 112-176 (515)
415 cd02983 P5_C P5 family, C-term 89.4 2.6 5.6E-05 36.1 8.6 92 340-470 21-118 (130)
416 COG0695 GrxC Glutaredoxin and 88.7 2.1 4.6E-05 33.2 6.8 20 343-362 3-22 (80)
417 PF05988 DUF899: Bacterial pro 88.4 1.9 4E-05 39.8 7.2 99 11-113 56-169 (211)
418 COG4545 Glutaredoxin-related p 86.9 2.8 6.1E-05 31.4 6.0 73 344-434 5-77 (85)
419 PF10571 UPF0547: Uncharacteri 86.0 0.45 9.7E-06 28.1 1.2 23 492-514 2-24 (26)
420 PRK10824 glutaredoxin-4; Provi 85.9 1.6 3.4E-05 36.5 4.9 64 339-433 14-81 (115)
421 COG4545 Glutaredoxin-related p 85.8 3.4 7.4E-05 31.0 6.0 73 24-114 5-77 (85)
422 KOG2603 Oligosaccharyltransfer 85.1 9.6 0.00021 37.3 10.3 87 326-433 47-141 (331)
423 PF13778 DUF4174: Domain of un 84.9 15 0.00032 30.9 10.4 89 14-115 2-94 (118)
424 PF05768 DUF836: Glutaredoxin- 84.7 2.8 6E-05 32.5 5.6 56 23-107 2-57 (81)
425 cd02335 ZZ_ADA2 Zinc finger, Z 84.7 0.67 1.5E-05 32.1 1.8 31 491-521 1-33 (49)
426 cd03071 PDI_b'_NRX PDIb' famil 84.5 6.5 0.00014 31.9 7.4 74 197-303 37-114 (116)
427 cd00029 C1 Protein kinase C co 84.4 0.74 1.6E-05 31.8 2.0 36 488-523 9-47 (50)
428 PRK10954 periplasmic protein d 83.9 1.1 2.4E-05 41.9 3.5 41 338-381 36-79 (207)
429 PRK14890 putative Zn-ribbon RN 83.1 0.78 1.7E-05 32.7 1.6 25 489-513 24-57 (59)
430 PF13831 PHD_2: PHD-finger; PD 82.7 0.34 7.4E-06 31.1 -0.3 18 504-521 4-21 (36)
431 PF13778 DUF4174: Domain of un 81.3 14 0.0003 31.1 8.9 89 334-435 3-94 (118)
432 cd02341 ZZ_ZZZ3 Zinc finger, Z 81.2 1 2.2E-05 31.1 1.6 31 491-521 1-35 (48)
433 cd03073 PDI_b'_ERp72_ERp57 PDI 80.4 6 0.00013 32.8 6.3 52 353-430 32-88 (111)
434 KOG3507 DNA-directed RNA polym 80.0 0.81 1.7E-05 32.3 0.8 28 490-517 20-50 (62)
435 PF09695 YtfJ_HI0045: Bacteria 79.1 38 0.00083 29.8 10.9 115 11-140 28-154 (160)
436 PRK12759 bifunctional gluaredo 79.1 3.7 8E-05 42.8 5.7 63 343-425 4-66 (410)
437 PF07449 HyaE: Hydrogenase-1 e 78.9 2.1 4.5E-05 35.2 3.0 26 409-435 72-97 (107)
438 PRK12759 bifunctional gluaredo 78.3 6.2 0.00013 41.1 7.1 35 23-65 4-38 (410)
439 smart00291 ZnF_ZZ Zinc-binding 78.1 2.4 5.2E-05 28.6 2.6 33 489-521 3-36 (44)
440 cd02343 ZZ_EF Zinc finger, ZZ 77.2 1.3 2.9E-05 30.4 1.2 30 492-521 2-32 (48)
441 cd02342 ZZ_UBA_plant Zinc fing 76.4 1.7 3.7E-05 28.9 1.4 32 492-523 2-35 (43)
442 cd03072 PDI_b'_ERp44 PDIb' fam 75.7 24 0.00052 29.2 8.6 51 354-430 29-84 (111)
443 PF01216 Calsequestrin: Calseq 75.0 39 0.00085 33.8 10.9 90 339-468 51-145 (383)
444 COG4312 Uncharacterized protei 73.7 6.9 0.00015 36.1 5.1 82 12-97 63-153 (247)
445 COG2888 Predicted Zn-ribbon RN 73.6 1.3 2.7E-05 31.6 0.3 25 489-513 26-59 (61)
446 cd03067 PDI_b_PDIR_N PDIb fami 73.5 17 0.00036 29.4 6.5 67 22-113 22-92 (112)
447 KOG0541 Alkyl hydroperoxide re 73.4 9.2 0.0002 33.4 5.5 62 12-75 34-100 (171)
448 COG1331 Highly conserved prote 73.0 6.1 0.00013 42.9 5.4 77 178-273 42-122 (667)
449 cd03031 GRX_GRX_like Glutaredo 72.8 17 0.00036 31.9 7.2 29 30-66 15-43 (147)
450 PF07754 DUF1610: Domain of un 72.0 3.4 7.3E-05 23.8 1.8 12 501-512 13-24 (24)
451 cd03060 GST_N_Omega_like GST_N 71.3 13 0.00028 27.6 5.6 59 345-434 3-61 (71)
452 PF03604 DNA_RNApol_7kD: DNA d 69.5 1.7 3.6E-05 27.1 0.2 25 491-515 1-28 (32)
453 smart00109 C1 Protein kinase C 69.4 2.2 4.7E-05 29.1 0.8 35 488-522 9-45 (49)
454 COG0678 AHP1 Peroxiredoxin [Po 69.2 22 0.00047 31.0 6.8 93 18-114 35-143 (165)
455 KOG3171 Conserved phosducin-li 68.8 14 0.0003 34.1 5.9 64 22-114 162-225 (273)
456 KOG0541 Alkyl hydroperoxide re 67.8 19 0.0004 31.6 6.2 103 331-437 34-152 (171)
457 KOG3171 Conserved phosducin-li 67.1 37 0.00079 31.4 8.2 85 323-436 139-227 (273)
458 cd03060 GST_N_Omega_like GST_N 66.6 15 0.00032 27.3 5.0 59 25-114 3-61 (71)
459 PF07449 HyaE: Hydrogenase-1 e 66.5 9.1 0.0002 31.4 4.0 26 89-115 72-97 (107)
460 PF00569 ZZ: Zinc finger, ZZ t 65.6 2.3 5E-05 29.0 0.3 32 489-520 3-36 (46)
461 cd03035 ArsC_Yffb Arsenate Red 65.5 15 0.00032 30.1 5.1 44 24-75 2-48 (105)
462 cd02977 ArsC_family Arsenate R 64.6 15 0.00032 29.9 5.1 20 24-43 2-21 (105)
463 PF05176 ATP-synt_10: ATP10 pr 64.1 47 0.001 32.1 9.0 102 11-115 112-232 (252)
464 cd02337 ZZ_CBP Zinc finger, ZZ 63.8 3.3 7.1E-05 27.5 0.7 30 491-521 1-31 (41)
465 COG3054 Predicted transcriptio 63.6 49 0.0011 28.8 7.9 123 330-467 50-183 (184)
466 PHA03075 glutaredoxin-like pro 63.1 12 0.00025 30.9 3.9 28 22-49 4-31 (123)
467 cd03036 ArsC_like Arsenate Red 63.1 4.8 0.0001 33.4 1.8 33 24-64 2-34 (111)
468 PHA03075 glutaredoxin-like pro 62.6 11 0.00023 31.1 3.6 29 340-368 2-30 (123)
469 PRK11788 tetratricopeptide rep 61.2 12 0.00026 38.3 4.9 23 489-511 353-375 (389)
470 PF07912 ERp29_N: ERp29, N-ter 61.0 1E+02 0.0022 26.0 9.9 92 180-301 22-116 (126)
471 cd02334 ZZ_dystrophin Zinc fin 59.7 6.8 0.00015 27.1 1.8 30 492-521 2-33 (49)
472 COG2761 FrnE Predicted dithiol 59.5 25 0.00054 33.1 6.0 30 181-210 6-35 (225)
473 cd02978 KaiB_like KaiB-like fa 59.1 37 0.0008 25.7 5.7 64 341-429 2-65 (72)
474 COG3019 Predicted metal-bindin 58.6 99 0.0021 26.6 8.7 63 341-437 26-91 (149)
475 PF13911 AhpC-TSA_2: AhpC/TSA 58.2 22 0.00047 29.4 5.0 53 362-418 3-55 (115)
476 cd02344 ZZ_HERC2 Zinc finger, 57.5 8 0.00017 26.2 1.7 30 492-521 2-33 (45)
477 COG1651 DsbG Protein-disulfide 56.9 20 0.00044 34.2 5.3 42 8-49 72-114 (244)
478 KOG4498 Uncharacterized conser 56.7 17 0.00038 32.8 4.2 56 325-382 35-92 (197)
479 PHA00626 hypothetical protein 55.8 9 0.00019 27.0 1.8 19 501-519 20-38 (59)
480 COG1651 DsbG Protein-disulfide 55.6 22 0.00047 34.0 5.3 44 326-369 71-114 (244)
481 smart00659 RPOLCX RNA polymera 54.8 7.7 0.00017 26.2 1.3 26 490-515 2-30 (44)
482 KOG2507 Ubiquitin regulatory p 54.6 98 0.0021 31.8 9.4 28 409-436 67-94 (506)
483 smart00249 PHD PHD zinc finger 54.1 20 0.00043 23.7 3.4 43 493-544 2-45 (47)
484 cd03067 PDI_b_PDIR_N PDIb fami 53.1 73 0.0016 25.8 6.7 68 180-272 20-91 (112)
485 cd02338 ZZ_PCMF_like Zinc fing 51.4 12 0.00025 25.9 1.9 30 492-521 2-33 (49)
486 TIGR01617 arsC_related transcr 51.0 33 0.00072 28.6 5.0 33 25-65 3-35 (117)
487 cd03035 ArsC_Yffb Arsenate Red 50.8 24 0.00052 28.9 4.0 20 344-363 2-21 (105)
488 KOG3170 Conserved phosducin-li 50.1 41 0.00089 30.8 5.5 70 338-438 110-179 (240)
489 PF13917 zf-CCHC_3: Zinc knuck 49.9 7.2 0.00016 26.0 0.6 19 490-509 4-22 (42)
490 KOG3170 Conserved phosducin-li 49.8 30 0.00064 31.7 4.6 95 13-143 105-200 (240)
491 PF13743 Thioredoxin_5: Thiore 49.3 29 0.00062 31.4 4.6 35 345-382 2-36 (176)
492 PRK09301 circadian clock prote 49.1 60 0.0013 26.4 5.8 67 338-429 4-70 (103)
493 KOG0957 PHD finger protein [Ge 48.7 22 0.00047 36.9 4.0 56 488-545 117-175 (707)
494 PRK11823 DNA repair protein Ra 48.2 12 0.00025 39.6 2.2 24 488-511 5-28 (446)
495 TIGR01617 arsC_related transcr 47.1 46 0.001 27.7 5.3 33 344-385 2-34 (117)
496 PRK01655 spxA transcriptional 47.1 42 0.0009 28.7 5.1 45 23-75 2-49 (131)
497 PF13909 zf-H2C2_5: C2H2-type 46.4 11 0.00024 21.3 0.9 10 505-514 1-10 (24)
498 cd03032 ArsC_Spx Arsenate Redu 46.1 62 0.0014 26.8 5.9 42 24-73 3-47 (115)
499 cd03036 ArsC_like Arsenate Red 46.0 16 0.00035 30.2 2.3 20 344-363 2-21 (111)
500 KOG4582 Uncharacterized conser 46.0 10 0.00022 37.1 1.2 33 490-522 152-186 (278)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-30 Score=259.66 Aligned_cols=317 Identities=25% Similarity=0.417 Sum_probs=204.3
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCC
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 100 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 100 (551)
++|.||||||+||++++|+++++++.+++.+ .+.+..|++. .+ ..++++|+|+++
T Consensus 45 vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--~~----------------------~~~~~~y~v~gy 100 (493)
T KOG0190|consen 45 VLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--EE----------------------SDLASKYEVRGY 100 (493)
T ss_pred EEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--hh----------------------hhhHhhhcCCCC
Confidence 8899999999999999999999999999875 4555555444 43 469999999999
Q ss_pred cEEEEEcCCCeE-EEcCcch-------hh-hhcCCCCCCc-hHHHHHHHHHHHHH--------------------HHhhc
Q 008845 101 PHLVILDENGKV-LSDGGVE-------II-REYGVEGYPF-TVERIKEMKEQEER--------------------AKREQ 150 (551)
Q Consensus 101 P~~~lid~~G~i-~~~~~~~-------~~-~~~~~~~~~~-~~~~i~~~~~~~~~--------------------~~~~~ 150 (551)
||+.++ ++|+. ...+|.+ ++ ++.|....+. +.+.++.++..... .....
T Consensus 101 PTlkiF-rnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~ 179 (493)
T KOG0190|consen 101 PTLKIF-RNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRD 179 (493)
T ss_pred CeEEEE-ecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccc
Confidence 999999 89985 6666654 22 3444444332 34555555544210 01111
Q ss_pred ccccccccCCcc---------------eeecC-CCceeecc-ccCCcEEEEEEecCCCccc-------------------
Q 008845 151 SLRSVLTSHSRD---------------FVISS-DGRKISVS-DLEGKTIGLYFSMSSYKAS------------------- 194 (551)
Q Consensus 151 ~~~~~~~~~~~d---------------~~~~~-~~~~~~~~-~~~gk~v~l~f~~~~~~~c------------------- 194 (551)
.+.+.+++. .+ ++++. +...+... +.....+..|+..+..|++
T Consensus 180 d~~F~~ts~-~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~ 258 (493)
T KOG0190|consen 180 DYKFAHTSD-SDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLG 258 (493)
T ss_pred cceeeccCc-HhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccc
Confidence 122221111 00 01111 11111110 0111112223333333444
Q ss_pred ------------hhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCcC--Cc
Q 008845 195 ------------AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--TL 260 (551)
Q Consensus 195 ------------~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v~--~~ 260 (551)
..+.+.+.+++++++++ +.|+.+|. +...+.++.||+. +.
T Consensus 259 ~~~~~~~~~~~~e~~~~~~~~vAk~f~~~-----l~Fi~~d~---------------------e~~~~~~~~~Gl~~~~~ 312 (493)
T KOG0190|consen 259 LDFFVFFKCNRFEELRKKFEEVAKKFKGK-----LRFILIDP---------------------ESFARVLEFFGLEEEQL 312 (493)
T ss_pred eeEEeccccccHHHHHHHHHHHHHhcccc-----eEEEEECh---------------------HHhhHHHHhcCcccccC
Confidence 44445555555555543 44444432 2255689999998 45
Q ss_pred c-eEEEECCC-CCcccccchhhhhhcCCCCCCCChhhHHHHHHHHHHHHhhhhhhhhhccCCcc----cee-cCCCCeee
Q 008845 261 P-TLVIIGPD-GKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLD----FVV-GKNGGKVP 333 (551)
Q Consensus 261 P-~lvi~~~~-gk~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----f~~-~~~g~~v~ 333 (551)
| .+++++.+ +++..++. .++.+.++.|......+..++.++|..++.+.+ .++ +.+...+.
T Consensus 313 ~~~~v~~~~~~~Ky~~~~e------------~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv 380 (493)
T KOG0190|consen 313 PIRAVILNEDGSKYPLEEE------------ELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIV 380 (493)
T ss_pred CeeEEeeccccccccCccc------------cccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHh
Confidence 6 44455544 34433322 356778999999999999999999999987654 344 88889998
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH
Q 008845 334 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 413 (551)
Q Consensus 334 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 413 (551)
+++ +|.|||.||||||+||+++.|.+++|+++|++. -.||...+|.+.+ + ..
T Consensus 381 ~de--~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~---~~vviAKmDaTaN----------------------d-~~ 432 (493)
T KOG0190|consen 381 LDE--GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD---ENVVIAKMDATAN----------------------D-VP 432 (493)
T ss_pred hcc--ccceEEEEcCcccchhhhhhhHHHHHHHHhcCC---CCcEEEEeccccc----------------------c-Cc
Confidence 887 999999999999999999999999999999874 4667777777653 1 23
Q ss_pred hcCCCCcceEEEECCCC
Q 008845 414 KFKVSGIPMLVAIGPSG 430 (551)
Q Consensus 414 ~~~v~~~P~~~lid~~G 430 (551)
...+.++||++++..++
T Consensus 433 ~~~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 433 SLKVDGFPTILFFPAGH 449 (493)
T ss_pred cccccccceEEEecCCC
Confidence 45677899999995554
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=99.96 E-value=3.4e-28 Score=259.27 Aligned_cols=352 Identities=20% Similarity=0.300 Sum_probs=213.2
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 96 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (551)
+++ ++|+|||+||++|+++.|.+.++++.+...+ ++.++.|+++... .++++|+
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~------------------------~l~~~~~ 103 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM------------------------ELAQEFG 103 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH------------------------HHHHhcC
Confidence 467 9999999999999999999999998886543 5777777766543 4999999
Q ss_pred CCCCcEEEEEcCCCeEEEcCcch-------hhhhc-CCCCCCc-hHHHHHHHHHH--------------------HHHHH
Q 008845 97 VMGIPHLVILDENGKVLSDGGVE-------IIREY-GVEGYPF-TVERIKEMKEQ--------------------EERAK 147 (551)
Q Consensus 97 v~~~P~~~lid~~G~i~~~~~~~-------~~~~~-~~~~~~~-~~~~i~~~~~~--------------------~~~~~ 147 (551)
|.++|++++++.++.+ ...|.+ ++... +...... +..++..+.+. ...+.
T Consensus 104 i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~ 182 (477)
T PTZ00102 104 VRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVAD 182 (477)
T ss_pred CCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHH
Confidence 9999999999644444 444432 12221 1111111 11111111000 00000
Q ss_pred hhccccccc-c----------------------------------cCCcceeecCCCceeeccccCCcEEEEEEecCCCc
Q 008845 148 REQSLRSVL-T----------------------------------SHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYK 192 (551)
Q Consensus 148 ~~~~~~~~~-~----------------------------------~~~~d~~~~~~~~~~~~~~~~gk~v~l~f~~~~~~ 192 (551)
.......+. . ....+.+...+.+........++.++.++. .+.
T Consensus 183 ~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 260 (477)
T PTZ00102 183 KHREHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCG--TTE 260 (477)
T ss_pred hccccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEec--CHH
Confidence 000000111 0 000011111111111011113333333222 233
Q ss_pred cchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHH-HHHhhcCcCCcceEEEECCCCC
Q 008845 193 ASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGK 271 (551)
Q Consensus 193 ~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~-~l~~~f~v~~~P~lvi~~~~gk 271 (551)
....+.+.+.+++++++++ +.|+.+|.+. .. ++.+.||+..+|++++.+.+|+
T Consensus 261 ~~~~~~~~~~~~A~~~~~~-----~~f~~vd~~~---------------------~~~~~~~~~gi~~~P~~~i~~~~~~ 314 (477)
T PTZ00102 261 DYDKYKSVVRKVARKLREK-----YAFVWLDTEQ---------------------FGSHAKEHLLIEEFPGLAYQSPAGR 314 (477)
T ss_pred HHHHHHHHHHHHHHhccCc-----eEEEEEechh---------------------cchhHHHhcCcccCceEEEEcCCcc
Confidence 3455677777788887765 5666666653 33 4788999999999999876666
Q ss_pred cccccchhhhhhcCCCCCCCChhhHHHHHHHHHHHHhhhhhhhhhccCCcccee-cCCCCee---ecccCCCCEEEEEEe
Q 008845 272 TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GKNGGKV---PVSDLAGKTILLYFS 347 (551)
Q Consensus 272 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~~g~~v---~l~~~~gk~vll~F~ 347 (551)
+....... . -.+.+.+..|+....++...+.++|...+...+-.+ ...|..+ .+. .||+|+|+||
T Consensus 315 y~~~~~~~--------~-~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~--~~k~vlv~f~ 383 (477)
T PTZ00102 315 YLLPPAKE--------S-FDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFK--SDKDVLLEIY 383 (477)
T ss_pred cCCCcccc--------c-cCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhc--CCCCEEEEEE
Confidence 54322100 0 147899999999999988888888877765433322 3334433 333 3899999999
Q ss_pred cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcceEEEEC
Q 008845 348 AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIG 427 (551)
Q Consensus 348 a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~~lid 427 (551)
|+||++|+.+.|.++++++.+++. ..+.++.++.+.+. ..++.|+++++||+++++
T Consensus 384 a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~~-----------------------~~~~~~~v~~~Pt~~~~~ 439 (477)
T PTZ00102 384 APWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTANE-----------------------TPLEEFSWSAFPTILFVK 439 (477)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCCc-----------------------cchhcCCCcccCeEEEEE
Confidence 999999999999999999888753 24666666665442 367899999999999998
Q ss_pred CCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhccCCc
Q 008845 428 PSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 472 (551)
Q Consensus 428 ~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~~~~~ 472 (551)
++|++..+. .| ....+.|.+.|++.+....+
T Consensus 440 ~~~~~~~~~-------~G-------~~~~~~l~~~i~~~~~~~~~ 470 (477)
T PTZ00102 440 AGERTPIPY-------EG-------ERTVEGFKEFVNKHATNPFE 470 (477)
T ss_pred CCCcceeEe-------cC-------cCCHHHHHHHHHHcCCCCcc
Confidence 877753321 11 12335667777776654333
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.93 E-value=3.7e-24 Score=227.53 Aligned_cols=347 Identities=19% Similarity=0.374 Sum_probs=206.5
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 96 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (551)
+++ ++|.|||+||++|+.++|.+.++++.+...+ ++.++.|+++... .+++.|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK------------------------DLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH------------------------HHHHhCC
Confidence 467 9999999999999999999999999887543 5777777777553 4999999
Q ss_pred CCCCcEEEEEcCCCeE--EEcCcch-------hhhhc-CCCCCCc-hHHHHHHHHHHHH--------------------H
Q 008845 97 VMGIPHLVILDENGKV--LSDGGVE-------IIREY-GVEGYPF-TVERIKEMKEQEE--------------------R 145 (551)
Q Consensus 97 v~~~P~~~lid~~G~i--~~~~~~~-------~~~~~-~~~~~~~-~~~~i~~~~~~~~--------------------~ 145 (551)
|.++|+++++ ++|+. ....|.. ++... +...... +.++++.++.... .
T Consensus 73 i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 151 (462)
T TIGR01130 73 VSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSV 151 (462)
T ss_pred CccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHH
Confidence 9999999999 56664 4434422 22222 1111122 2445555443310 0
Q ss_pred HHhhccccc-ccccCC-----------cc-eeecCCCceeeccccCC------cEEEEEEecCCCccchhhhHHHHHHHH
Q 008845 146 AKREQSLRS-VLTSHS-----------RD-FVISSDGRKISVSDLEG------KTIGLYFSMSSYKASAEFTPRLVEVYE 206 (551)
Q Consensus 146 ~~~~~~~~~-~~~~~~-----------~d-~~~~~~~~~~~~~~~~g------k~v~l~f~~~~~~~c~~~~~~~~~~~~ 206 (551)
+........ +..... .. .++.............| ..+.-|+.....|.+..+++.....+
T Consensus 152 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~- 230 (462)
T TIGR01130 152 AEKLRDVYFFFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKY- 230 (462)
T ss_pred HHHhhhccceEEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhH-
Confidence 000000000 000000 00 01110000000000011 12223455566677777766543222
Q ss_pred HHhcCCCceEEEEeecccCH---HH----HHHHhcCCC--CccccCCch-hHHHHHhhcCcC--CcceEEEECCCCCccc
Q 008845 207 KLKGKGESFEIVLISLDDEE---ES----FKRDLGSMP--WLALPFKDK-SREKLARYFELS--TLPTLVIIGPDGKTLH 274 (551)
Q Consensus 207 ~~~~~~~~~~iv~v~~d~~~---~~----~~~~~~~~~--~~av~~~d~-~~~~l~~~f~v~--~~P~lvi~~~~gk~~~ 274 (551)
...+ ++.++++..+.+. +. +.+....+. ++.+...|. ....+++.|++. .+|++++++.++...+
T Consensus 231 --~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y 307 (462)
T TIGR01130 231 --FESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKY 307 (462)
T ss_pred --hCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCccccc
Confidence 2222 4445555554332 22 222222332 444443332 367899999998 6999999987652111
Q ss_pred ccchhhhhhcCCCCCCCChhhHHHHHHHHHHHHhhhhhhhhhccCCcc---cee-cCCCCeeecccCCCCEEEEEEecCC
Q 008845 275 SNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLD---FVV-GKNGGKVPVSDLAGKTILLYFSAHW 350 (551)
Q Consensus 275 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---f~~-~~~g~~v~l~~~~gk~vll~F~a~w 350 (551)
. .....++.+.+.+++....++...+..+|...+...+ ..+ ..+...+.++. ++++||+||++|
T Consensus 308 ~----------~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~--~~~vlv~f~a~w 375 (462)
T TIGR01130 308 P----------MDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDE--TKDVLVEFYAPW 375 (462)
T ss_pred C----------CCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccC--CCeEEEEEECCC
Confidence 1 1111468999999999999998888888877765322 122 44444444443 899999999999
Q ss_pred ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcceEEEECCCC
Q 008845 351 CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 430 (551)
Q Consensus 351 C~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G 430 (551)
|++|+.+.|.+.++++.++.....+.++.++++.+. +.. |+++++|+++++++++
T Consensus 376 C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------------------------~~~-~~i~~~Pt~~~~~~~~ 430 (462)
T TIGR01130 376 CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------------------------VPP-FEVEGFPTIKFVPAGK 430 (462)
T ss_pred CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------------------------cCC-CCccccCEEEEEeCCC
Confidence 999999999999999999862124777777765432 333 8999999999996555
Q ss_pred c
Q 008845 431 R 431 (551)
Q Consensus 431 ~ 431 (551)
+
T Consensus 431 ~ 431 (462)
T TIGR01130 431 K 431 (462)
T ss_pred C
Confidence 4
No 4
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.91 E-value=7e-24 Score=184.79 Aligned_cols=130 Identities=54% Similarity=1.107 Sum_probs=119.6
Q ss_pred cceecCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCccc
Q 008845 322 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLAL 401 (551)
Q Consensus 322 ~f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 401 (551)
+|+.+.+|+.+++++++||+|||+||++||++|++++|.|.+++++++++..+++|++|++|.+.+.+.+++++++|+.+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 46778999999999999999999999999999999999999999999865446999999999998999999999999888
Q ss_pred ccCc-hhhHHHHHhcCCCCcceEEEECCCCcEEEcccchhhhhcCCCCCCC
Q 008845 402 PFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPF 451 (551)
Q Consensus 402 ~~~~-d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~ 451 (551)
|+.. +....+++.|+|.++|+++|||++|+++.+.+++.+..+|+.+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8765 5567899999999999999999999999999999999999999997
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=1.1e-23 Score=183.12 Aligned_cols=119 Identities=32% Similarity=0.649 Sum_probs=105.7
Q ss_pred CeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-----CCCeEEEEEeCCCChHHHHHHHhcCC--Ccccc
Q 008845 330 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-----NESLEVVFISSDRDQTSFDEFFKGMP--WLALP 402 (551)
Q Consensus 330 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~~~vv~vs~d~~~~~~~~~~~~~~--~~~~~ 402 (551)
+.+++++++||+|+|+|||+|||+|++++|.|.+++++++++ ..+++||+|+.|.+.+++++|+++++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 345778999999999999999999999999999999988764 23699999999998888999999997 77788
Q ss_pred cCchhhHHHHHhcCCCCcceEEEECCCCcEEEcccchhhhhcCCCC
Q 008845 403 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEA 448 (551)
Q Consensus 403 ~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~ 448 (551)
+..+....+++.|++.++|+++|||++|+|++++++..|..+|.++
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 8877677899999999999999999999999999999888877443
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.88 E-value=1.9e-22 Score=175.76 Aligned_cols=128 Identities=52% Similarity=1.030 Sum_probs=112.5
Q ss_pred ceecCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC-CCccc
Q 008845 323 FVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM-PWLAL 401 (551)
Q Consensus 323 f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~-~~~~~ 401 (551)
|++|.+ +++++++++||++||+||++||++|+.++|.|++++++++++..+++|++|++|.+..++++|++++ +|..+
T Consensus 2 ~~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 2 FLLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 455555 7999999999999999999999999999999999999997643469999999999988999999999 68888
Q ss_pred ccCc-hhhHHHHHhcCCCCcceEEEECCCCcEEEcccchhhhh-cCCCCCCC
Q 008845 402 PFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAV-HGAEAYPF 451 (551)
Q Consensus 402 ~~~~-d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~g~~~~p~ 451 (551)
++.. .....+.+.|+|.++|+++|||++|+|+.+++...+.. +|+.+|||
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 7765 34567888999999999999999999999998888766 89999986
No 7
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.87 E-value=3.9e-22 Score=173.47 Aligned_cols=117 Identities=29% Similarity=0.575 Sum_probs=101.4
Q ss_pred ceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC------CEEEEEEeCCCCHHHHHHHHhhCC--CCccc
Q 008845 11 LRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG------DFEVIFVSGDEDDEAFKGYFSKMP--WLAVP 81 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~------~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~ 81 (551)
+.+++++++|| ++|+|||+||++|+.++|.|.+++++++++. ++.|++|+.|.+.+.+++|+++++ |+.++
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 45678999999 9999999999999999999999999886531 599999999999889999999998 55666
Q ss_pred cCChhhHHHHHhhcCCCCCcEEEEEcCCCeEEEcCcchhhhhcCCCC
Q 008845 82 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEG 128 (551)
Q Consensus 82 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~ 128 (551)
+.+.. ...+.+.|++.++|++++||++|+|+.+++...+.++|..+
T Consensus 96 ~~~~~-~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 96 FEDEF-RRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred ccchH-HHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 66533 24789999999999999999999999999999988876543
No 8
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.84 E-value=1.4e-20 Score=164.03 Aligned_cols=127 Identities=52% Similarity=1.033 Sum_probs=113.3
Q ss_pred ceecccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHhhCCCCccc
Q 008845 4 MKIYELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVP 81 (551)
Q Consensus 4 ~~~~~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 81 (551)
|.. .+|+.+++++++|| ++|+||++||++|+.++|.+.++++++.+.+ ++.|++|++|.+.+.+.++++++++..++
T Consensus 3 l~~-~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~ 81 (131)
T cd03009 3 LLR-NDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVP 81 (131)
T ss_pred ccc-cCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcc
Confidence 444 57899999999999 9999999999999999999999999997652 68999999999999999999999887777
Q ss_pred cCChhhHHHHHhhcCCCCCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCc
Q 008845 82 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPF 131 (551)
Q Consensus 82 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (551)
+.+.+....+.+.|++.++|++++||++|+++.+++..++..++..++||
T Consensus 82 ~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 82 FSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred cCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 77644446789999999999999999999999999999888899888886
No 9
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.84 E-value=2e-20 Score=160.20 Aligned_cols=121 Identities=48% Similarity=0.904 Sum_probs=112.8
Q ss_pred ecCCCCeeecc-cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhc--CCCccc
Q 008845 325 VGKNGGKVPVS-DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG--MPWLAL 401 (551)
Q Consensus 325 ~~~~g~~v~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~--~~~~~~ 401 (551)
.+.+|..+..+ .++||+|+++|.|.|||||+.+.|.|.++|+++++.+..++||+||.|++.+++..|+.. +.|+.+
T Consensus 18 ~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~i 97 (157)
T KOG2501|consen 18 RKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAI 97 (157)
T ss_pred eccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEe
Confidence 37777777766 789999999999999999999999999999999988778999999999999999999996 579999
Q ss_pred ccCchhhHHHHHhcCCCCcceEEEECCCCcEEEcccchhhhhcC
Q 008845 402 PFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHG 445 (551)
Q Consensus 402 ~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g 445 (551)
|+.++..+++.+.|.|.++|++++++++|.++..+++..+..+|
T Consensus 98 Pf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g 141 (157)
T KOG2501|consen 98 PFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGG 141 (157)
T ss_pred cCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhc
Confidence 99999999999999999999999999999999999999988776
No 10
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.83 E-value=5.1e-20 Score=160.45 Aligned_cols=121 Identities=48% Similarity=0.971 Sum_probs=105.1
Q ss_pred ceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCC-CCEEEEEEeCCCCHHHHHHHHhhC-CCCccccCChhh
Q 008845 11 LRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKM-PWLAVPFSDSET 87 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~~~~~~~ 87 (551)
+++++++++|| ++|+||++||++|+.++|.++++++++++. .++.|++|++|.+.+++++|++++ ++..+++.+...
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 69999999999 999999999999999999999999999865 258999999999999999999999 466666655444
Q ss_pred HHHHHhhcCCCCCcEEEEEcCCCeEEEcCcchhhh-hcCCCCCCc
Q 008845 88 RDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIR-EYGVEGYPF 131 (551)
Q Consensus 88 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~-~~~~~~~~~ 131 (551)
...+.+.|++.++|+++|||++|+|+.+++.+.+. ++++.+|||
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 45688899999999999999999999998877654 588888875
No 11
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.82 E-value=6.2e-20 Score=157.15 Aligned_cols=123 Identities=36% Similarity=0.642 Sum_probs=113.6
Q ss_pred eecCCCceeecc-ccCCcEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhc--CCCCcc
Q 008845 164 VISSDGRKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLG--SMPWLA 240 (551)
Q Consensus 164 ~~~~~~~~~~~~-~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~--~~~~~a 240 (551)
+.+.++..+..+ .+.||.|++||++.|||+|+.|||.+.++|+.++..+.+|+|+|||.|.+.+++.+++. .++|++
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 445667777776 58999999999999999999999999999999999999999999999999999999998 489999
Q ss_pred ccCCchhHHHHHhhcCcCCcceEEEECCCCCcccccchhhhhhcCC
Q 008845 241 LPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGV 286 (551)
Q Consensus 241 v~~~d~~~~~l~~~f~v~~~P~lvi~~~~gk~~~~~~~~~v~~~~~ 286 (551)
|||.+...+.+.+.|++.++|++++++++|..+..++...|+.+|.
T Consensus 97 iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 97 IPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred ecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 9999999999999999999999999999999999999888888774
No 12
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.80 E-value=4.4e-19 Score=145.26 Aligned_cols=93 Identities=45% Similarity=0.983 Sum_probs=84.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC--CCcccccCchhhHHHHHhcC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM--PWLALPFGDARKASLSRKFK 416 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~--~~~~~~~~~d~~~~l~~~~~ 416 (551)
||+++|+||++||++|++++|.|.++++++++ ..++++|+|++|.+.++++++++.+ +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999994 3479999999999999999999988 89999999988889999999
Q ss_pred CCCcceEEEECCCCcE
Q 008845 417 VSGIPMLVAIGPSGRT 432 (551)
Q Consensus 417 v~~~P~~~lid~~G~i 432 (551)
|.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
No 13
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.80 E-value=5.5e-19 Score=149.94 Aligned_cols=110 Identities=26% Similarity=0.489 Sum_probs=95.5
Q ss_pred cccee-cCCCCeeecccCC-CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCC
Q 008845 321 LDFVV-GKNGGKVPVSDLA-GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 398 (551)
Q Consensus 321 ~~f~~-~~~g~~v~l~~~~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 398 (551)
|+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++.+ ++.++.++ |.+.++.++++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 56777 8999999999997 99999999999999999999999999888754 37888775 6677889999999986
Q ss_pred cccccCchhhHHHHHhcCCCCcceEEEECCCCcEEEcc
Q 008845 399 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 399 ~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 436 (551)
..+|...+ ..+.+.|++.++|++++||++|+|++++
T Consensus 77 ~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 77 EAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 56776653 4588999999999999999999999985
No 14
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.79 E-value=9.2e-19 Score=155.56 Aligned_cols=115 Identities=33% Similarity=0.626 Sum_probs=102.6
Q ss_pred Ccccee-c--CCCCeeecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhc
Q 008845 320 DLDFVV-G--KNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 395 (551)
Q Consensus 320 ~~~f~~-~--~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 395 (551)
.|+|.+ + .+|+++++++++||+++|+||++ |||+|+.++|.|.+++++++++ ++.+++|+++.+.. ..+++++
T Consensus 6 ~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~-~~~~~~~ 82 (146)
T PF08534_consen 6 APDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPP-VREFLKK 82 (146)
T ss_dssp --CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHH-HHHHHHH
T ss_pred CCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHH-HHHHHHh
Confidence 477875 4 99999999999999999999999 9999999999999999998876 69999999998865 8888888
Q ss_pred CCCcccccCchhhHHHHHhcCCC---------CcceEEEECCCCcEEEcccc
Q 008845 396 MPWLALPFGDARKASLSRKFKVS---------GIPMLVAIGPSGRTITKEAR 438 (551)
Q Consensus 396 ~~~~~~~~~~d~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~~~ 438 (551)
.+ +.+|+..|....+.+.|++. ++|+++|||++|+|++.+.+
T Consensus 83 ~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 83 YG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp TT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred hC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeC
Confidence 65 78888889999999999998 99999999999999998543
No 15
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.78 E-value=6.5e-19 Score=152.21 Aligned_cols=108 Identities=24% Similarity=0.331 Sum_probs=97.0
Q ss_pred CCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-----CChHHHHHHHhcCCCcccc
Q 008845 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEFFKGMPWLALP 402 (551)
Q Consensus 328 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d-----~~~~~~~~~~~~~~~~~~~ 402 (551)
.|+.+++++++||++||+||++||++|++++|.|++++++++++ ++.+++|+.+ .+.+.+++|+++++ +.+|
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p 88 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP 88 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence 35789999999999999999999999999999999999999864 6999999863 45788899999888 6789
Q ss_pred cCchhhHHHHHhcCCCCcceEEEECCCCcEEEcccc
Q 008845 403 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 438 (551)
Q Consensus 403 ~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~ 438 (551)
+..|....+.+.|++.++|+++|||++|+++++..+
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEec
Confidence 999999999999999999999999999999998543
No 16
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.76 E-value=4.4e-18 Score=147.31 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=97.9
Q ss_pred Ccccee-cCCC--CeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC
Q 008845 320 DLDFVV-GKNG--GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 396 (551)
Q Consensus 320 ~~~f~~-~~~g--~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 396 (551)
.|+|.+ +.+| ..+++++++||+++|+||++||++|++++|.|+++.+++ +++||.|+.+.+.+.+++|++.+
T Consensus 3 ~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~ 77 (127)
T cd03010 3 APAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARH 77 (127)
T ss_pred CCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhc
Confidence 478887 7777 889999999999999999999999999999999987664 38999999988889999999887
Q ss_pred CCcccccCchhhHHHHHhcCCCCcceEEEECCCCcEEEccc
Q 008845 397 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 397 ~~~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 437 (551)
+....++..|....+++.|++.++|+++++|++|+++.+..
T Consensus 78 ~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~ 118 (127)
T cd03010 78 GNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHV 118 (127)
T ss_pred CCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEe
Confidence 74333455677788999999999999999999999998843
No 17
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.76 E-value=1.2e-17 Score=173.54 Aligned_cols=116 Identities=20% Similarity=0.332 Sum_probs=102.1
Q ss_pred CCcccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-----CChHHHHHH
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEF 392 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d-----~~~~~~~~~ 392 (551)
..|+|.+ +.+|+.+.++ +||+|||+|||+||++|+.++|.|++++++++.+ +++||.|+++ .+..+++++
T Consensus 37 ~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~ 112 (521)
T PRK14018 37 TLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKW 112 (521)
T ss_pred CCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHH
Confidence 3588988 9999999998 6999999999999999999999999999998743 5899999873 335678888
Q ss_pred HhcCCCcccccCchhhHHHHHhcCCCCcceEEEECCCCcEEEcccc
Q 008845 393 FKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 438 (551)
Q Consensus 393 ~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~ 438 (551)
++.+++..+|+..|....+++.|+|+++|+++|||++|+|+.+..+
T Consensus 113 ~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G 158 (521)
T PRK14018 113 YAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKG 158 (521)
T ss_pred HHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeC
Confidence 8888877889999999999999999999999999999999988543
No 18
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.76 E-value=4.8e-18 Score=156.68 Aligned_cols=113 Identities=23% Similarity=0.257 Sum_probs=94.3
Q ss_pred CCcccee-cCC--CCeeecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHh
Q 008845 319 GDLDFVV-GKN--GGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 394 (551)
Q Consensus 319 ~~~~f~~-~~~--g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 394 (551)
..|+|.+ +.+ |+.+.++++ +||+++|+||++||++|++++|.|.++++ + +++|++|+.|.+.+..++|++
T Consensus 44 ~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~--~~~vi~v~~~~~~~~~~~~~~ 117 (185)
T PRK15412 44 PVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q--GIRVVGMNYKDDRQKAISWLK 117 (185)
T ss_pred CCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c--CCEEEEEECCCCHHHHHHHHH
Confidence 3578887 666 466766665 79999999999999999999999988753 2 489999999888888999999
Q ss_pred cCCCcccc-cCchhhHHHHHhcCCCCcceEEEECCCCcEEEcccc
Q 008845 395 GMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 438 (551)
Q Consensus 395 ~~~~~~~~-~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~ 438 (551)
+++ +.+| +..|....+.+.|++.++|++++||++|+|++++.+
T Consensus 118 ~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 118 ELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred HcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence 887 4555 356777889999999999999999999999998654
No 19
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.75 E-value=7.4e-18 Score=158.66 Aligned_cols=134 Identities=16% Similarity=0.268 Sum_probs=102.7
Q ss_pred cCCcccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChHHH
Q 008845 318 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSF 389 (551)
Q Consensus 318 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d-------~~~~~~ 389 (551)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ +++||+|++| .+.++.
T Consensus 77 ~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 77 KSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHH
Confidence 34589988 9999999999999999999999999999999999999999999876 6999999975 345678
Q ss_pred HHHH-hcCCCcccccCc--hhhH-HHHHhcC-------------CCCcceEEEECCCCcEEEcccchhhhhcCCCCCCCC
Q 008845 390 DEFF-KGMPWLALPFGD--ARKA-SLSRKFK-------------VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT 452 (551)
Q Consensus 390 ~~~~-~~~~~~~~~~~~--d~~~-~l~~~~~-------------v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 452 (551)
++|+ ++++ +.+|+.. |.++ .++..|+ +++.|++||||++|+|+.+..+. ..
T Consensus 155 ~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~-----------~~ 222 (236)
T PLN02399 155 KQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT-----------TS 222 (236)
T ss_pred HHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC-----------CC
Confidence 8887 4555 6677763 3322 2322222 45679999999999999985432 22
Q ss_pred HHHHHHHHHHHHHHhc
Q 008845 453 EERMKEIDGQYNEMAK 468 (551)
Q Consensus 453 ~~~~~~l~~~l~~~~~ 468 (551)
. ++|++.|+++++
T Consensus 223 ~---~~le~~I~~lL~ 235 (236)
T PLN02399 223 P---FQIEKDIQKLLA 235 (236)
T ss_pred H---HHHHHHHHHHhc
Confidence 2 356666776664
No 20
>PLN02412 probable glutathione peroxidase
Probab=99.75 E-value=6.3e-18 Score=152.99 Aligned_cols=116 Identities=18% Similarity=0.280 Sum_probs=93.0
Q ss_pred CCcccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChHHHH
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 390 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~-------~~~~~~ 390 (551)
..|+|.+ +.+|+.+++++++||++||+||++||++|++++|.|++++++|+++ ++.|++|++|. +.++..
T Consensus 8 ~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 8 SIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHH
Confidence 3588988 8999999999999999999999999999999999999999999876 69999999862 344555
Q ss_pred HHH-hcCCCcccccCch--hhH-HHHHhcC-------------CCCcceEEEECCCCcEEEccc
Q 008845 391 EFF-KGMPWLALPFGDA--RKA-SLSRKFK-------------VSGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 391 ~~~-~~~~~~~~~~~~d--~~~-~l~~~~~-------------v~~~P~~~lid~~G~i~~~~~ 437 (551)
+++ ++++ +.+|+..+ .++ ..++.|+ +.+.|+.||||++|+|+.+..
T Consensus 86 ~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 86 QTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 554 5555 67887642 221 3333332 677899999999999999854
No 21
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.75 E-value=1.6e-17 Score=151.63 Aligned_cols=144 Identities=17% Similarity=0.311 Sum_probs=118.8
Q ss_pred Ccccee-cCCCCeeecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChHHHH
Q 008845 320 DLDFVV-GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 390 (551)
Q Consensus 320 ~~~f~~-~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~-------~~~~~~ 390 (551)
.|+|.+ +.+|+.++++++ +||++||+||++|||.|..+++.|.+++++++++ ++++++|++|. +.+.++
T Consensus 4 ~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~ 81 (171)
T cd02969 4 APDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMK 81 (171)
T ss_pred CCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHH
Confidence 478887 889999999998 8999999999999999999999999999999864 69999999985 568899
Q ss_pred HHHhcCCCcccccCchhhHHHHHhcCCCCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhccC
Q 008845 391 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 470 (551)
Q Consensus 391 ~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~~~ 470 (551)
++++.++ +.+|+..|....+++.|++..+|+++|||++|+|++....... .+. ........+|.++|+.++.+.
T Consensus 82 ~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~--~~~---~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 82 AKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDS--RPG---NDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCC--ccc---ccccccHHHHHHHHHHHHcCC
Confidence 9999887 4588888988999999999999999999999999987432210 000 013345567888888888765
Q ss_pred C
Q 008845 471 P 471 (551)
Q Consensus 471 ~ 471 (551)
+
T Consensus 156 ~ 156 (171)
T cd02969 156 P 156 (171)
T ss_pred C
Confidence 5
No 22
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.7e-17 Score=170.82 Aligned_cols=300 Identities=20% Similarity=0.281 Sum_probs=172.6
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|.||+|||+||+.+.|++.++++.++. .+.+..|+++.. ..+++.|+|.
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~------------------------~~~~~~y~i~ 100 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEH------------------------KDLCEKYGIQ 100 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhh------------------------HHHHHhcCCc
Confidence 45 99999999999999999999999999985 355555555433 4699999999
Q ss_pred CCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHHHHHHHHHhhcccccccccCCcceeecCCCceeec-ccc
Q 008845 99 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISV-SDL 177 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 177 (551)
++||+.++.+..+++...+ +.+.+.+.++....-. ......... -++......... -..
T Consensus 101 gfPtl~~f~~~~~~~~~~~------------~~~~~~~~~~~~~~~~----~~~~~~~~~----~v~~l~~~~~~~~~~~ 160 (383)
T KOG0191|consen 101 GFPTLKVFRPGKKPIDYSG------------PRNAESLAEFLIKELE----PSVKKLVEG----EVFELTKDNFDETVKD 160 (383)
T ss_pred cCcEEEEEcCCCceeeccC------------cccHHHHHHHHHHhhc----cccccccCC----ceEEccccchhhhhhc
Confidence 9999999965424444322 1233333333322211 111111000 011111111110 011
Q ss_pred CCcEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCc
Q 008845 178 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 257 (551)
Q Consensus 178 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v 257 (551)
....+++.|++|||++|+.+.|.+.+++..++. +...++. .+|.+. ...++..++|
T Consensus 161 ~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~--~~d~~~---------------------~~~~~~~~~v 216 (383)
T KOG0191|consen 161 SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELG--KIDATV---------------------HKSLASRLEV 216 (383)
T ss_pred cCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEE--eeccch---------------------HHHHhhhhcc
Confidence 335678889999999999999999999998875 3444444 444433 5678899999
Q ss_pred CCcceEEEECCCCC-cccccchhhhhhcCCCCCCCChhhHHHHHHHHHHHH-hhhhhhhhhccCCcc-cee-cCCCCeee
Q 008845 258 STLPTLVIIGPDGK-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKE-ESQTLESVLVSGDLD-FVV-GKNGGKVP 333 (551)
Q Consensus 258 ~~~P~lvi~~~~gk-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~-f~~-~~~g~~v~ 333 (551)
..+|+++++.++.+ ...... --+.+.+..+........ ..+.+.+. ..++ +.. -.+.....
T Consensus 217 ~~~Pt~~~f~~~~~~~~~~~~------------~R~~~~i~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~ 281 (383)
T KOG0191|consen 217 RGYPTLKLFPPGEEDIYYYSG------------LRDSDSIVSFVEKKERRNIPEPELKEI---EDKDTFSPTFLDTAEFL 281 (383)
T ss_pred cCCceEEEecCCCcccccccc------------cccHHHHHHHHHhhcCCCCCCcccccc---cCccccccchhhhhhhh
Confidence 99999999976655 211111 124556666655333211 01111111 1111 111 00001111
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH
Q 008845 334 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 413 (551)
Q Consensus 334 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 413 (551)
...-.-+..++.|+++||.+|....|.+...+.........+.+..+...... .++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-----------------------~~~~ 338 (383)
T KOG0191|consen 282 DSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLK-----------------------SLCQ 338 (383)
T ss_pred hhhHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeecccccccc-----------------------chhh
Confidence 11111246789999999999999999998877761111112222222221111 2667
Q ss_pred hcCCCCcceEEEEC
Q 008845 414 KFKVSGIPMLVAIG 427 (551)
Q Consensus 414 ~~~v~~~P~~~lid 427 (551)
...++++|+..+..
T Consensus 339 ~~~~~~~~~~~~~~ 352 (383)
T KOG0191|consen 339 KAIVRGYPTIKLYN 352 (383)
T ss_pred HhhhhcCceeEeec
Confidence 77788899888873
No 23
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.75 E-value=1.9e-17 Score=151.64 Aligned_cols=115 Identities=24% Similarity=0.533 Sum_probs=105.4
Q ss_pred CCcccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCC
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 397 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~ 397 (551)
..|+|.+ +.+|+.+++++++||+++|+||++||++|+...+.|.++++++++. +++++.|++|.+.+.+.++++.++
T Consensus 40 ~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~ 117 (173)
T PRK03147 40 EAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYG 117 (173)
T ss_pred CCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhC
Confidence 3478988 8999999999999999999999999999999999999999999864 589999999998889999998887
Q ss_pred CcccccCchhhHHHHHhcCCCCcceEEEECCCCcEEEcc
Q 008845 398 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 398 ~~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 436 (551)
+.+|+..|....+.+.|++.++|+++++|++|+++...
T Consensus 118 -~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~ 155 (173)
T PRK03147 118 -LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVI 155 (173)
T ss_pred -CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEE
Confidence 67888888888999999999999999999999999774
No 24
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.75 E-value=1.1e-17 Score=155.47 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=93.3
Q ss_pred cCCcccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChHHH
Q 008845 318 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSF 389 (551)
Q Consensus 318 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d-------~~~~~~ 389 (551)
...|+|.+ +.+|+.+++++++||+|||+|||+||++|++++|.|++++++++++ +++||+|+++ .+.+++
T Consensus 17 ~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~~ 94 (199)
T PTZ00056 17 KSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKDI 94 (199)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHHH
Confidence 34589988 9999999999999999999999999999999999999999999875 6999999974 356789
Q ss_pred HHHHhcCCCcccccCch------hhHH--------HHHhcCCC----Cc---ceEEEECCCCcEEEccc
Q 008845 390 DEFFKGMPWLALPFGDA------RKAS--------LSRKFKVS----GI---PMLVAIGPSGRTITKEA 437 (551)
Q Consensus 390 ~~~~~~~~~~~~~~~~d------~~~~--------l~~~~~v~----~~---P~~~lid~~G~i~~~~~ 437 (551)
++|+++++ +.+|+..+ .... +...|++. ++ |++||||++|+|+.+..
T Consensus 95 ~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 95 RKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred HHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 99998877 56776532 1112 22334442 22 37999999999998754
No 25
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.73 E-value=1.8e-17 Score=142.81 Aligned_cols=113 Identities=32% Similarity=0.655 Sum_probs=103.4
Q ss_pred CCcccee-cCCCCeeecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 396 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 396 (551)
..|+|.+ +.+|+.+++++++||+++|.||++ ||++|+..++.|++++++++.+ ++++++|+.|. .++.+++.+.+
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~-~~~~~~~~~~~ 80 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDD-PEEIKQFLEEY 80 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSS-HHHHHHHHHHH
T ss_pred CCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeeccccc-ccchhhhhhhh
Confidence 3489988 899999999999999999999999 9999999999999999999865 69999999964 46888888887
Q ss_pred CCcccccCchhhHHHHHhcCCC------CcceEEEECCCCcEEEc
Q 008845 397 PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 397 ~~~~~~~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 435 (551)
+ +.+|+..|....+.+.|++. .+|+++|||++|+|+++
T Consensus 81 ~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 81 G-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp T-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred c-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 7 88899999999999999999 99999999999999974
No 26
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.73 E-value=4.4e-17 Score=133.31 Aligned_cols=92 Identities=46% Similarity=0.927 Sum_probs=79.3
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhC--CCCccccCChhhHHHHHhhcC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM--PWLAVPFSDSETRDKLDELFK 96 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 96 (551)
|| ++|+|||+||++|+.++|.|.++++++++..++++++|+.|.+.+.++++++++ +|..+++.+.. ...+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHCC
Confidence 78 999999999999999999999999999954479999999999999999999999 56666665554 468999999
Q ss_pred CCCCcEEEEEcCCCeE
Q 008845 97 VMGIPHLVILDENGKV 112 (551)
Q Consensus 97 v~~~P~~~lid~~G~i 112 (551)
+.++|+++++|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
No 27
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.73 E-value=8.9e-18 Score=149.98 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=92.9
Q ss_pred cccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChHHHHHH
Q 008845 321 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 392 (551)
Q Consensus 321 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~-------~~~~~~~~ 392 (551)
|+|.+ +.+|+.+++++++||+|||+|||+||+ |+.++|.|++++++++++ ++.|++|++|. +.+.+++|
T Consensus 3 ~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 3 YDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred ceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHHHH
Confidence 67887 899999999999999999999999999 999999999999999765 69999999753 35678999
Q ss_pred Hhc-CCCcccccCchh--hHH-HHHhcC--CCCcc-----------eEEEECCCCcEEEcccc
Q 008845 393 FKG-MPWLALPFGDAR--KAS-LSRKFK--VSGIP-----------MLVAIGPSGRTITKEAR 438 (551)
Q Consensus 393 ~~~-~~~~~~~~~~d~--~~~-l~~~~~--v~~~P-----------~~~lid~~G~i~~~~~~ 438 (551)
+++ ++ +.+|+..|. ... ..+.|+ +.++| ++||||++|+|+.+..+
T Consensus 80 ~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 80 CETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred HHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 986 55 678877542 222 344555 45666 89999999999998544
No 28
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.72 E-value=4.1e-17 Score=148.88 Aligned_cols=114 Identities=23% Similarity=0.322 Sum_probs=94.4
Q ss_pred cCCcccee-cCCCC--eeecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHH
Q 008845 318 SGDLDFVV-GKNGG--KVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 393 (551)
Q Consensus 318 ~~~~~f~~-~~~g~--~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~ 393 (551)
...|+|.+ +.+|+ .++++++ +||+++|+||++||++|+.++|.+++++++ +++++.|+.+...++..+|+
T Consensus 38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~ 111 (173)
T TIGR00385 38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFL 111 (173)
T ss_pred CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHH
Confidence 34689988 77876 4555665 689999999999999999999998876542 48999999987777788899
Q ss_pred hcCCCcccc-cCchhhHHHHHhcCCCCcceEEEECCCCcEEEcccc
Q 008845 394 KGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 438 (551)
Q Consensus 394 ~~~~~~~~~-~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~ 438 (551)
++++ +.+| +..|....+.+.|++.++|++++||++|+++++..+
T Consensus 112 ~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G 156 (173)
T TIGR00385 112 KELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAG 156 (173)
T ss_pred HHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEec
Confidence 8887 4555 456778889999999999999999999999998543
No 29
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.71 E-value=6.2e-17 Score=146.57 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=99.7
Q ss_pred CCcccee-cCCCCeeecccCCCCEEEEEEecCC-ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 396 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 396 (551)
..|+|.+ +.+|+.+++++++||+++|+||++| |++|..++|.|+++++++. +++|+.||.|. +...++|.+++
T Consensus 23 ~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~-~~~~~~f~~~~ 97 (167)
T PRK00522 23 KAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADL-PFAQKRFCGAE 97 (167)
T ss_pred CCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCC-HHHHHHHHHhC
Confidence 3489988 8999999999999999999999999 9999999999999988873 48999999985 46678899988
Q ss_pred CCcccccCch-hhHHHHHhcCCCCcc---------eEEEECCCCcEEEccc
Q 008845 397 PWLALPFGDA-RKASLSRKFKVSGIP---------MLVAIGPSGRTITKEA 437 (551)
Q Consensus 397 ~~~~~~~~~d-~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~~ 437 (551)
+...+++..| ..+.+++.||+...| +++|||++|+|++.+.
T Consensus 98 ~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 98 GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 7545788888 556999999998877 9999999999999864
No 30
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.71 E-value=5.9e-17 Score=139.92 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=92.3
Q ss_pred cccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-----CCHHHHHHHHhhCCCCcc
Q 008845 7 YELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAFKGYFSKMPWLAV 80 (551)
Q Consensus 7 ~~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~ 80 (551)
++.++.+++++++|| ++|+||++||++|+.++|.|+++++++++. ++.+++|+.+ .+.+.+++|++++++.+.
T Consensus 10 ~~~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 10 LNTDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred hcCCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 345678999999999 999999999999999999999999999976 4999999763 467889999999988766
Q ss_pred ccCChhhHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 81 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 81 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
.+.|.. ..+.+.|++.++|++++||++|+++..
T Consensus 89 ~~~D~~--~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 89 VANDND--YATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred EEECCc--hHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 666554 468899999999999999999999975
No 31
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.71 E-value=1.7e-16 Score=146.70 Aligned_cols=126 Identities=22% Similarity=0.304 Sum_probs=98.6
Q ss_pred CCcccee-cCCCCeeecc--cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhc
Q 008845 319 GDLDFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 395 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 395 (551)
..|+|.+ +.+|+.++++ +++||+++|+||++|||+|++++|.+.+++++. ++.+++|+.| +.++.++|+++
T Consensus 51 ~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-----~~~vv~Is~~-~~~~~~~~~~~ 124 (189)
T TIGR02661 51 AAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-----ETDVVMISDG-TPAEHRRFLKD 124 (189)
T ss_pred cCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-----CCcEEEEeCC-CHHHHHHHHHh
Confidence 4589998 8999999994 568999999999999999999999999887653 3678888854 66788999998
Q ss_pred CCCcccccCchhhHHHHHhcCCCCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 008845 396 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 464 (551)
Q Consensus 396 ~~~~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~ 464 (551)
++. .++... ..+++.+.|++.++|+.++||++|+|++++.. -+.++++++.+.++
T Consensus 125 ~~~-~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~~------------~~~~~le~ll~~l~ 179 (189)
T TIGR02661 125 HEL-GGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGLT------------NTREHLESLLEADR 179 (189)
T ss_pred cCC-Ccceee-chhHHHHhccCCccceEEEECCCCeEEEccCC------------CCHHHHHHHHHHHH
Confidence 873 222211 34678999999999999999999999986321 24455666665554
No 32
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.70 E-value=8.3e-17 Score=141.87 Aligned_cols=114 Identities=26% Similarity=0.411 Sum_probs=102.9
Q ss_pred Ccccee-cCCCCeeecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCC
Q 008845 320 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 397 (551)
Q Consensus 320 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~ 397 (551)
.|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|.+++++++++ +++||+|++|. .+.+.+|+++++
T Consensus 3 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~-~~~~~~~~~~~~ 79 (140)
T cd03017 3 APDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDS-VESHAKFAEKYG 79 (140)
T ss_pred CCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCC-HHHHHHHHHHhC
Confidence 478887 8999999999999999999999 589999999999999999999765 69999999984 578899999887
Q ss_pred CcccccCchhhHHHHHhcCCCCc---------ceEEEECCCCcEEEccc
Q 008845 398 WLALPFGDARKASLSRKFKVSGI---------PMLVAIGPSGRTITKEA 437 (551)
Q Consensus 398 ~~~~~~~~d~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~~~ 437 (551)
+.+|+..|....+++.|++... |+++|||++|+|++...
T Consensus 80 -~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~ 127 (140)
T cd03017 80 -LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWR 127 (140)
T ss_pred -CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEe
Confidence 5788888988999999999988 99999999999999854
No 33
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.70 E-value=1.5e-16 Score=146.27 Aligned_cols=116 Identities=18% Similarity=0.335 Sum_probs=90.8
Q ss_pred CCcccee-cCCCCeeecccCCCCEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChHHH
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 389 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~-------~~~~~ 389 (551)
..|+|.+ +.+|+.+++++++||++ |+.|||+|||+|+.++|.|++++++|+++ ++.|++|++|. +.+++
T Consensus 19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~ 96 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEI 96 (183)
T ss_pred cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHH
Confidence 3488988 89999999999999965 55669999999999999999999999875 69999999752 34678
Q ss_pred HHHHh-cCCCcccccCch--hhH----HHH------------HhcCCCCcce---EEEECCCCcEEEccc
Q 008845 390 DEFFK-GMPWLALPFGDA--RKA----SLS------------RKFKVSGIPM---LVAIGPSGRTITKEA 437 (551)
Q Consensus 390 ~~~~~-~~~~~~~~~~~d--~~~----~l~------------~~~~v~~~P~---~~lid~~G~i~~~~~ 437 (551)
.+|+. +++ +.+|+..| .++ .+. ..+++.++|+ +||||++|+|+.+..
T Consensus 97 ~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 97 KEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 88876 555 66777643 221 222 1246779995 699999999999854
No 34
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.70 E-value=1.4e-16 Score=142.76 Aligned_cols=114 Identities=21% Similarity=0.350 Sum_probs=100.8
Q ss_pred CCcccee-cCCCCeeecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 396 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 396 (551)
..|+|.+ +.+|+.+++++++||++||+||++ ||+.|+.+++.|++++++++++ ++++|+|++|. .+.+++|++++
T Consensus 9 ~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d~-~~~~~~~~~~~ 85 (154)
T PRK09437 9 IAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTDK-PEKLSRFAEKE 85 (154)
T ss_pred cCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCC-HHHHHHHHHHh
Confidence 3589988 899999999999999999999986 6788999999999999999875 69999999984 58888999988
Q ss_pred CCcccccCchhhHHHHHhcCCCCc------------ceEEEECCCCcEEEcc
Q 008845 397 PWLALPFGDARKASLSRKFKVSGI------------PMLVAIGPSGRTITKE 436 (551)
Q Consensus 397 ~~~~~~~~~d~~~~l~~~~~v~~~------------P~~~lid~~G~i~~~~ 436 (551)
+ +.+|+..|..+.+.+.|++... |+.+|||++|+|+...
T Consensus 86 ~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 86 L-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred C-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 6 6788888888899999998754 6789999999999984
No 35
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.70 E-value=1.2e-16 Score=141.48 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=100.8
Q ss_pred CCcccee-cCCCCeeecccCCCCEEEEEEecCC-ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 396 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 396 (551)
..|+|.+ +.+|+.+++++++||++||+||++| |++|+.++|.|++++++++ ++.||.|++|. ....++|.+.+
T Consensus 5 ~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~-~~~~~~~~~~~ 79 (143)
T cd03014 5 KAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL-PFAQKRWCGAE 79 (143)
T ss_pred CCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC-HHHHHHHHHhc
Confidence 4588988 8999999999999999999999998 6999999999999998873 48999999986 56778898888
Q ss_pred CCcccccCchhh-HHHHHhcCCCC------cceEEEECCCCcEEEcccc
Q 008845 397 PWLALPFGDARK-ASLSRKFKVSG------IPMLVAIGPSGRTITKEAR 438 (551)
Q Consensus 397 ~~~~~~~~~d~~-~~l~~~~~v~~------~P~~~lid~~G~i~~~~~~ 438 (551)
+...+++..|.. ..+++.|++.. .|+++|||++|+|+..+.+
T Consensus 80 ~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 80 GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 866788888875 88999999964 7999999999999998643
No 36
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.69 E-value=9.9e-17 Score=143.45 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=89.9
Q ss_pred ccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChHHHHHHH
Q 008845 322 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDEFF 393 (551)
Q Consensus 322 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d-------~~~~~~~~~~ 393 (551)
+|.+ +.+|+++++++++||++||+|||+|||+|+..+|.|++++++++++ ++.|++|+++ .+.+..++|+
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHHH
Confidence 5777 8999999999999999999999999999999999999999999875 6999999852 3457788999
Q ss_pred hc-CCCcccccCch-----hhHHHHHhcC---CCCcce----EEEECCCCcEEEccc
Q 008845 394 KG-MPWLALPFGDA-----RKASLSRKFK---VSGIPM----LVAIGPSGRTITKEA 437 (551)
Q Consensus 394 ~~-~~~~~~~~~~d-----~~~~l~~~~~---v~~~P~----~~lid~~G~i~~~~~ 437 (551)
++ ++ +.+|+..+ ........|. ..++|+ +||||++|+++.+..
T Consensus 82 ~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 82 RRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 75 55 67787644 1111122232 236898 999999999999854
No 37
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.69 E-value=1.5e-16 Score=145.28 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=106.9
Q ss_pred CCcccee-cCCC----CeeecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHH
Q 008845 319 GDLDFVV-GKNG----GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 392 (551)
Q Consensus 319 ~~~~f~~-~~~g----~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 392 (551)
..|+|.+ +.+| +.+++++++||++||+|| ++||++|..+++.|+++++++.+. ++.|+.|++|.. .....+
T Consensus 4 ~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~-~~~~~~ 80 (173)
T cd03015 4 KAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSH-FSHLAW 80 (173)
T ss_pred cCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCH-HHHHHH
Confidence 3588887 6666 789999999999999999 899999999999999999999865 699999999854 333445
Q ss_pred HhcC------CCcccccCchhhHHHHHhcCCC------CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHH
Q 008845 393 FKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 460 (551)
Q Consensus 393 ~~~~------~~~~~~~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 460 (551)
.+.. ..+.+|+..|....+++.|++. .+|+++|||++|+|++.+... . |. ++..+++.
T Consensus 81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~-------~--~~-~~~~~~il 150 (173)
T cd03015 81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVND-------L--PV-GRSVDETL 150 (173)
T ss_pred HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecC-------C--CC-CCCHHHHH
Confidence 4432 2367888999999999999996 678999999999999985422 1 11 22456677
Q ss_pred HHHHHHh
Q 008845 461 GQYNEMA 467 (551)
Q Consensus 461 ~~l~~~~ 467 (551)
+.|+.+.
T Consensus 151 ~~l~~~~ 157 (173)
T cd03015 151 RVLDALQ 157 (173)
T ss_pred HHHHHhh
Confidence 7776653
No 38
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.69 E-value=2.4e-16 Score=133.37 Aligned_cols=110 Identities=34% Similarity=0.624 Sum_probs=100.0
Q ss_pred cee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC-hHHHHHHHhcCCCcc
Q 008845 323 FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKGMPWLA 400 (551)
Q Consensus 323 f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~-~~~~~~~~~~~~~~~ 400 (551)
|.+ +.+|+.+++++++||+++|+||++||++|+..++.|.++.+++... ++.++.|++|.. .+.+++++++++ ..
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~-~~ 78 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD--GVEVVGVNVDDDDPAAVKAFLKKYG-IT 78 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHHHHHcC-CC
Confidence 555 7889999999999999999999999999999999999999998633 599999999987 899999999988 67
Q ss_pred cccCchhhHHHHHhcCCCCcceEEEECCCCcEEEc
Q 008845 401 LPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 401 ~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 435 (551)
+++..+....+.+.|++.++|+++|+|++|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 88888888889999999999999999999999986
No 39
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.68 E-value=2.5e-16 Score=142.01 Aligned_cols=123 Identities=10% Similarity=0.052 Sum_probs=96.2
Q ss_pred CCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEE------EEEeCCCChHHHHHHHh----cC
Q 008845 327 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV------VFISSDRDQTSFDEFFK----GM 396 (551)
Q Consensus 327 ~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~v------v~vs~d~~~~~~~~~~~----~~ 396 (551)
.+.+.++.++++||+.||+|||+||++|+.++|.|.++.++ ++.+ +.|+.|+.......|++ +.
T Consensus 47 ~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 47 TVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKG 120 (184)
T ss_pred ccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECccchhhHHHHHHHHHHHh
Confidence 45567888999999999999999999999999999988322 4677 88999876555444443 33
Q ss_pred CCccc---ccCchhhHHHHHhcCCCCcceE-EEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHh
Q 008845 397 PWLAL---PFGDARKASLSRKFKVSGIPML-VAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 467 (551)
Q Consensus 397 ~~~~~---~~~~d~~~~l~~~~~v~~~P~~-~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~ 467 (551)
. ..+ ++..|..+.+...|++.++|++ ||||++|+|+++..+ +.+++.++++...+++++
T Consensus 121 ~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G-----------~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 121 K-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG-----------ALSDSDIQTVISLVNGLL 183 (184)
T ss_pred c-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC-----------CCCHHHHHHHHHHHHHHh
Confidence 3 233 4777888889999999999988 899999999999654 356777777777777665
No 40
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.68 E-value=2.1e-16 Score=145.88 Aligned_cols=135 Identities=22% Similarity=0.274 Sum_probs=105.2
Q ss_pred cCCcccee-c-CCCC--eeecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHH
Q 008845 318 SGDLDFVV-G-KNGG--KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 392 (551)
Q Consensus 318 ~~~~~f~~-~-~~g~--~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 392 (551)
...|+|.+ + .+|+ .+++++++||++||+|| ++||++|+.+++.|++++++++++ +++|++||+|.. ...++|
T Consensus 6 ~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~-~~~~~~ 82 (187)
T TIGR03137 6 TEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTH-FVHKAW 82 (187)
T ss_pred CcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHHH
Confidence 34689987 6 5676 68888999999999999 999999999999999999999865 689999999864 444444
Q ss_pred HhcC---CCcccccCchhhHHHHHhcCCC------CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHH
Q 008845 393 FKGM---PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 463 (551)
Q Consensus 393 ~~~~---~~~~~~~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l 463 (551)
.+.. .-+.+|+..|....+++.||+. ..|++||||++|+|++...... ...+..++|.+.|
T Consensus 83 ~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~----------~~~~~~~~ll~~l 152 (187)
T TIGR03137 83 HDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDN----------GIGRDASELLRKI 152 (187)
T ss_pred HhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCC----------CCCCCHHHHHHHH
Confidence 4432 2367888899999999999996 4699999999999999853211 1223556666666
Q ss_pred HH
Q 008845 464 NE 465 (551)
Q Consensus 464 ~~ 465 (551)
++
T Consensus 153 ~~ 154 (187)
T TIGR03137 153 KA 154 (187)
T ss_pred HH
Confidence 53
No 41
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.67 E-value=5.3e-16 Score=131.51 Aligned_cols=102 Identities=22% Similarity=0.424 Sum_probs=86.2
Q ss_pred ccCceeecccCC-Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCCh
Q 008845 8 ELLLRVKLDSLK-GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 85 (551)
Q Consensus 8 ~~~~~v~l~~~~-gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (551)
.+|+.+++++++ || ++|+||++||++|+.++|.++++++.+.. ++.++.++ +.+.+.+++++++++...+++...
T Consensus 8 ~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~ 84 (114)
T cd02967 8 IDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLS 84 (114)
T ss_pred CCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEec
Confidence 578899999997 99 99999999999999999999999888753 47777765 667889999999998754443322
Q ss_pred hhHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 86 ETRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 86 ~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
..+.++|++.++|++++||++|+++++
T Consensus 85 ---~~~~~~~~~~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 85 ---AELGMAYQVSKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred ---HHHHhhcCCCCcCeEEEECCCCeEEec
Confidence 247889999999999999999999985
No 42
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.67 E-value=4.9e-16 Score=138.53 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=99.9
Q ss_pred Ccccee-cCCCCeeecccCCC-CEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC
Q 008845 320 DLDFVV-GKNGGKVPVSDLAG-KTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 396 (551)
Q Consensus 320 ~~~f~~-~~~g~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 396 (551)
.|+|.+ +.+|+.+++++++| |+++|.|| ++||++|+..+|.|++++++++++ ++++++|+.|. .+..++|.+++
T Consensus 7 ~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~-~~~~~~~~~~~ 83 (149)
T cd03018 7 APDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDS-PFSLRAWAEEN 83 (149)
T ss_pred CCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCC-HHHHHHHHHhc
Confidence 478887 88999999999999 99999898 999999999999999999999865 69999999874 56788999888
Q ss_pred CCcccccCchhh--HHHHHhcCCCC----c--ceEEEECCCCcEEEcccc
Q 008845 397 PWLALPFGDARK--ASLSRKFKVSG----I--PMLVAIGPSGRTITKEAR 438 (551)
Q Consensus 397 ~~~~~~~~~d~~--~~l~~~~~v~~----~--P~~~lid~~G~i~~~~~~ 438 (551)
+ +.+|+..|.. ..+++.|++.. + |+++|||++|+++++..+
T Consensus 84 ~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~ 132 (149)
T cd03018 84 G-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVS 132 (149)
T ss_pred C-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEec
Confidence 7 6788888876 88999999973 3 489999999999998554
No 43
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.66 E-value=6e-16 Score=141.60 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=107.7
Q ss_pred ccCCcccee----cCCCCeeecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHH
Q 008845 317 VSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 391 (551)
Q Consensus 317 ~~~~~~f~~----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~ 391 (551)
....|+|.. +.+..++++++++||++||+|| +.||++|..+++.|.++++++.+. +++|++||+|.. ...++
T Consensus 5 ~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~-~~~~a 81 (187)
T PRK10382 5 NTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTH-FTHKA 81 (187)
T ss_pred CCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCH-HHHHH
Confidence 345688854 3556678889999999999999 999999999999999999999876 699999999754 56666
Q ss_pred HHhcC---CCcccccCchhhHHHHHhcCC----CCc--ceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHH
Q 008845 392 FFKGM---PWLALPFGDARKASLSRKFKV----SGI--PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 462 (551)
Q Consensus 392 ~~~~~---~~~~~~~~~d~~~~l~~~~~v----~~~--P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 462 (551)
|.+.. ..+.+|++.|.+..+++.||+ .++ |++||||++|+|++...... ..++.++++.+.
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~----------~~~~~~~eil~~ 151 (187)
T PRK10382 82 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE----------GIGRDASDLLRK 151 (187)
T ss_pred HHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCC----------CCCCCHHHHHHH
Confidence 66543 347889999999999999998 356 99999999999999854221 123356666666
Q ss_pred HHHH
Q 008845 463 YNEM 466 (551)
Q Consensus 463 l~~~ 466 (551)
|+.+
T Consensus 152 l~al 155 (187)
T PRK10382 152 IKAA 155 (187)
T ss_pred HHhh
Confidence 6544
No 44
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.66 E-value=4.4e-16 Score=133.95 Aligned_cols=107 Identities=24% Similarity=0.471 Sum_probs=94.5
Q ss_pred cccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC-hHHHHHHHhcCCC
Q 008845 321 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKGMPW 398 (551)
Q Consensus 321 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~-~~~~~~~~~~~~~ 398 (551)
|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++ +.++.|++|.+ .+.++++.++++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~- 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG- 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-
Confidence 57777 899999999999999999999999999999999999988765 46788888754 788899999888
Q ss_pred cccccCchhhHHHHHhcCCCCcceEEEECCCCcEEEcc
Q 008845 399 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 399 ~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 436 (551)
+.+|+..|.+..+++.|+|.++|+++|+|++| ++++.
T Consensus 73 ~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~ 109 (123)
T cd03011 73 YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVT 109 (123)
T ss_pred CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEE
Confidence 68888888888999999999999999999999 88763
No 45
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.66 E-value=8.2e-16 Score=135.49 Aligned_cols=117 Identities=23% Similarity=0.358 Sum_probs=103.2
Q ss_pred Ccccee-cCCCCeeecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCC
Q 008845 320 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 397 (551)
Q Consensus 320 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~ 397 (551)
.|+|.+ +.+|+.+++++++||+++|+|| ++||++|..++|.|++++++++.. ++++++|++| +++..++|.+.++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHHHHHhccc
Confidence 378887 8999999999999999999999 789999999999999999999654 6999999997 4577889999885
Q ss_pred CcccccCchhhHHHHHhcCCCCcc---------eEEEECCCCcEEEcccch
Q 008845 398 WLALPFGDARKASLSRKFKVSGIP---------MLVAIGPSGRTITKEARD 439 (551)
Q Consensus 398 ~~~~~~~~d~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~~~~ 439 (551)
...+++..|....+.+.|++...| +++|||++|+|++++.+.
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 578888889888999999998766 899999999999986543
No 46
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-15 Score=132.24 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=104.5
Q ss_pred cCCcccee-cCCCCeeecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhc
Q 008845 318 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 395 (551)
Q Consensus 318 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 395 (551)
...|+|.+ +.+|+.++|++++||+|||+|| ..++|.|..++..+.+.+.++... +.+|++||.|. ....++|.++
T Consensus 8 ~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~Ds-~~~~~~F~~k 84 (157)
T COG1225 8 DKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPDS-PKSHKKFAEK 84 (157)
T ss_pred CcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCCC-HHHHHHHHHH
Confidence 45699999 9999999999999999999999 679999999999999999999876 69999999985 4788999999
Q ss_pred CCCcccccCchhhHHHHHhcCCC------------CcceEEEECCCCcEEEcc
Q 008845 396 MPWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 396 ~~~~~~~~~~d~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 436 (551)
++ +++|+++|....+++.|||. ..+++||||++|+|++..
T Consensus 85 ~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 85 HG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred hC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 99 77999999999999999984 357899999999999984
No 47
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.65 E-value=9.9e-15 Score=137.98 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=111.8
Q ss_pred CcEEEEEEec---CCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhc
Q 008845 179 GKTIGLYFSM---SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 255 (551)
Q Consensus 179 gk~v~l~f~~---~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f 255 (551)
+..+.+ |++ +|||+|+.+.|.+.+++..+. .+++.++.+|.++ .+.+++.|
T Consensus 20 ~~~i~~-f~~~~a~wC~~C~~~~p~l~~la~~~~----~~~i~~v~vd~~~---------------------~~~l~~~~ 73 (215)
T TIGR02187 20 PVEIVV-FTDNDKEGCQYCKETEQLLEELSEVSP----KLKLEIYDFDTPE---------------------DKEEAEKY 73 (215)
T ss_pred CeEEEE-EcCCCCCCCCchHHHHHHHHHHHhhCC----CceEEEEecCCcc---------------------cHHHHHHc
Confidence 344445 555 999999999999999988762 2457788888664 67899999
Q ss_pred CcCCcceEEEECCCCCccc-ccchhhhhhcCCCCCCCChhhHHHHHHHHHH-HHhhhhhhhhhccCCccceecCCCCeee
Q 008845 256 ELSTLPTLVIIGPDGKTLH-SNVAEAIEEHGVGAFPFTPEKFAELAEIQRA-KEESQTLESVLVSGDLDFVVGKNGGKVP 333 (551)
Q Consensus 256 ~v~~~P~lvi~~~~gk~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~g~~v~ 333 (551)
+|.++||+++++. |+... .. .|. .+.+.+..+++.... ....+. ++... .-.
T Consensus 74 ~V~~~Pt~~~f~~-g~~~~~~~-------~G~----~~~~~l~~~i~~~~~~~~~~~~-------------L~~~~-~~~ 127 (215)
T TIGR02187 74 GVERVPTTIILEE-GKDGGIRY-------TGI----PAGYEFAALIEDIVRVSQGEPG-------------LSEKT-VEL 127 (215)
T ss_pred CCCccCEEEEEeC-CeeeEEEE-------eec----CCHHHHHHHHHHHHHhcCCCCC-------------CCHHH-HHH
Confidence 9999999999964 33321 11 111 133444444432211 000000 10000 011
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH
Q 008845 334 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 413 (551)
Q Consensus 334 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 413 (551)
+.++.+..+++.||++||++|+.+.+.++++..+. .++.+..|+.+..+ ++++
T Consensus 128 l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~-----------------------~~~~ 180 (215)
T TIGR02187 128 LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENP-----------------------DLAE 180 (215)
T ss_pred HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCH-----------------------HHHH
Confidence 22334556677799999999999998888776653 23677777766654 5889
Q ss_pred hcCCCCcceEEEECCCCc
Q 008845 414 KFKVSGIPMLVAIGPSGR 431 (551)
Q Consensus 414 ~~~v~~~P~~~lid~~G~ 431 (551)
.|+|.++||+++. .+|+
T Consensus 181 ~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 181 KYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred HhCCccCCEEEEe-cCCE
Confidence 9999999999987 5665
No 48
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.65 E-value=1.3e-15 Score=135.19 Aligned_cols=104 Identities=32% Similarity=0.538 Sum_probs=92.7
Q ss_pred ccCceeecccCCCc-EEEEEecC-CCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCCh
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 85 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (551)
.+|+.+++++++|| ++|+||++ |||+|+..+|.+.++++.++..+ +.+++|+.+.+.. +.+|+++.+..+..+.|.
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~-v~~v~v~~~~~~~-~~~~~~~~~~~~~~~~D~ 93 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG-VDVVGVSSDDDPP-VREFLKKYGINFPVLSDP 93 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT-CEEEEEEESSSHH-HHHHHHHTTTTSEEEEET
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc-eEEEEecccCCHH-HHHHHHhhCCCceEEech
Confidence 78999999999999 99999999 99999999999999999988774 8999999987776 999999977666666664
Q ss_pred hhHHHHHhhcCCC---------CCcEEEEEcCCCeEEEc
Q 008845 86 ETRDKLDELFKVM---------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 86 ~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~ 115 (551)
. ..+.+.|++. ++|++++||++|+|++.
T Consensus 94 ~--~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~ 130 (146)
T PF08534_consen 94 D--GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYR 130 (146)
T ss_dssp T--SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEE
T ss_pred H--HHHHHHhCCccccccccCCeecEEEEEECCCEEEEE
Confidence 4 4699999998 99999999999999985
No 49
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.64 E-value=1e-15 Score=135.19 Aligned_cols=115 Identities=27% Similarity=0.471 Sum_probs=96.8
Q ss_pred Ccccee-cCCCCeeecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhcC-CCeEEEEEeCCC---ChHHHHHHH
Q 008845 320 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN-ESLEVVFISSDR---DQTSFDEFF 393 (551)
Q Consensus 320 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~vv~vs~d~---~~~~~~~~~ 393 (551)
.|+|.+ +.+|+.+++++++||++||+||++||++ |.++++.|++++++++++. .++++++|++|. +++.+++|+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 478888 8999999999999999999999999998 9999999999999997652 359999999974 357788999
Q ss_pred hcCCCcccccCchh---hHHHHHhcCCCCc--------------ceEEEECCCCcEEEc
Q 008845 394 KGMPWLALPFGDAR---KASLSRKFKVSGI--------------PMLVAIGPSGRTITK 435 (551)
Q Consensus 394 ~~~~~~~~~~~~d~---~~~l~~~~~v~~~--------------P~~~lid~~G~i~~~ 435 (551)
+.++ ..++++.+. ...+++.||+... |+++|||++|+|+..
T Consensus 82 ~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 82 KAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 9886 456655543 4788999997543 579999999999986
No 50
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.63 E-value=3.2e-15 Score=141.33 Aligned_cols=175 Identities=17% Similarity=0.174 Sum_probs=110.1
Q ss_pred cCCCc-EEEEEec---CCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHH
Q 008845 17 SLKGK-IGLYFSA---SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 92 (551)
Q Consensus 17 ~~~gk-vlv~F~a---~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (551)
.+++. .++.|++ +||++|+.+.|.+.++++++. ++.+..+++|.+.. ..++
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~---~~~i~~v~vd~~~~----------------------~~l~ 70 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP---KLKLEIYDFDTPED----------------------KEEA 70 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC---CceEEEEecCCccc----------------------HHHH
Confidence 34444 5666877 999999999999999999884 35666777774433 4699
Q ss_pred hhcCCCCCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHHHHHHHHHhhcccccccccCCcceeecCCCcee
Q 008845 93 ELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 172 (551)
Q Consensus 93 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 172 (551)
+.|+|.++||++++ ++|+.+.. +..|.. ....+..+++..-... .....+.... .-
T Consensus 71 ~~~~V~~~Pt~~~f-~~g~~~~~------~~~G~~----~~~~l~~~i~~~~~~~---~~~~~L~~~~----------~~ 126 (215)
T TIGR02187 71 EKYGVERVPTTIIL-EEGKDGGI------RYTGIP----AGYEFAALIEDIVRVS---QGEPGLSEKT----------VE 126 (215)
T ss_pred HHcCCCccCEEEEE-eCCeeeEE------EEeecC----CHHHHHHHHHHHHHhc---CCCCCCCHHH----------HH
Confidence 99999999999999 56766531 112221 2233444443221100 0000010000 01
Q ss_pred eccccCCcEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHH
Q 008845 173 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 252 (551)
Q Consensus 173 ~~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~ 252 (551)
.+..+++..+.+.|+++||++|+.+.+.+.++.... .. +.+..+|.+. .+.++
T Consensus 127 ~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~--i~~~~vD~~~---------------------~~~~~ 179 (215)
T TIGR02187 127 LLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DK--ILGEMIEANE---------------------NPDLA 179 (215)
T ss_pred HHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----Cc--eEEEEEeCCC---------------------CHHHH
Confidence 111235556677799999999999888777766542 12 4444455443 45788
Q ss_pred hhcCcCCcceEEEEC
Q 008845 253 RYFELSTLPTLVIIG 267 (551)
Q Consensus 253 ~~f~v~~~P~lvi~~ 267 (551)
+.|+|.++||+++.+
T Consensus 180 ~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 180 EKYGVMSVPKIVINK 194 (215)
T ss_pred HHhCCccCCEEEEec
Confidence 899999999999874
No 51
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.63 E-value=2e-15 Score=140.78 Aligned_cols=136 Identities=19% Similarity=0.248 Sum_probs=106.3
Q ss_pred CCcccee-cCCCCeeecccCCCCEEEE-EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChH--HH-HHHH
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SF-DEFF 393 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~--~~-~~~~ 393 (551)
..|+|.+ +..| .+++++++||+++| +||++||++|..+++.|.+++++++++ +++|++||+|.... +| +++.
T Consensus 7 ~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~~ 83 (202)
T PRK13190 7 KAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDIE 83 (202)
T ss_pred CCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHH
Confidence 4589988 6655 79999999997776 688999999999999999999999876 69999999986422 22 2333
Q ss_pred hcCC-CcccccCchhhHHHHHhcCCC------CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHH
Q 008845 394 KGMP-WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 466 (551)
Q Consensus 394 ~~~~-~~~~~~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~ 466 (551)
+..+ .+.+|+..|.++.+++.||+. .+|++||||++|+|++...... -.+++++++.+.|+.+
T Consensus 84 ~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~----------~~gr~~~ellr~l~~l 153 (202)
T PRK13190 84 ERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPA----------ETGRNIDEIIRITKAL 153 (202)
T ss_pred HhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCC----------CCCCCHHHHHHHHHHh
Confidence 4444 367999999999999999984 5899999999999998743211 2345677777777765
Q ss_pred h
Q 008845 467 A 467 (551)
Q Consensus 467 ~ 467 (551)
.
T Consensus 154 ~ 154 (202)
T PRK13190 154 Q 154 (202)
T ss_pred h
Confidence 4
No 52
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.62 E-value=2.3e-15 Score=130.30 Aligned_cols=99 Identities=20% Similarity=0.362 Sum_probs=86.3
Q ss_pred ceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCcccc-CChhhH
Q 008845 11 LRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF-SDSETR 88 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~ 88 (551)
.++++++++|| ++|+||++||++|+.++|.++++++++ ++.|++|+.+.+.+.+++|+++++..+.++ .|..
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-- 89 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-- 89 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc--
Confidence 78999999999 999999999999999999999998765 388999999889999999999988765443 3332
Q ss_pred HHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 89 DKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 89 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
..+++.|++.++|+++++|++|+++..
T Consensus 90 ~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 90 GRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred chHHHhcCCCCCCeEEEECCCceEEEE
Confidence 468899999999999999999999875
No 53
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.62 E-value=2.5e-15 Score=140.85 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=110.3
Q ss_pred hccCCcccee-cCCCCeeecccCCCCEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hHHHHH
Q 008845 316 LVSGDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFDE 391 (551)
Q Consensus 316 ~~~~~~~f~~-~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~--~~~~~~ 391 (551)
+....|+|.+ +.+|+.+.+++++||++ |+.||+.|||+|..+++.|++++++|+++ +++|++||+|.. ...|.+
T Consensus 4 ~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 4 LGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHH
Confidence 3445689988 78898888899999975 67889999999999999999999999876 699999999964 345666
Q ss_pred HHhcC--CCcccccCchhhHHHHHhcCCC-------CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHH
Q 008845 392 FFKGM--PWLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 462 (551)
Q Consensus 392 ~~~~~--~~~~~~~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 462 (551)
+++++ .-+.||+..|.+..+++.||+. ..|++||||++|+|+...... ..+++.++++.+.
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p----------~~~gr~~~eilr~ 151 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYP----------QEVGRNVDEILRA 151 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcC----------CCCCCCHHHHHHH
Confidence 66643 1367999999999999999983 689999999999999884211 0234566777777
Q ss_pred HHHH
Q 008845 463 YNEM 466 (551)
Q Consensus 463 l~~~ 466 (551)
|+.+
T Consensus 152 l~~l 155 (215)
T PRK13599 152 LKAL 155 (215)
T ss_pred HHHh
Confidence 7654
No 54
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.62 E-value=2.2e-15 Score=134.93 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=79.6
Q ss_pred CCccceecCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCC
Q 008845 319 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 398 (551)
Q Consensus 319 ~~~~f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 398 (551)
..++|.+. +|+.+++++++ ||+||++|||+|++++|.|+++++++ ++.|+.|++|...+
T Consensus 54 ~~~~f~l~-dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~-----g~~Vi~Vs~D~~~~----------- 112 (181)
T PRK13728 54 APRWFRLS-NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY-----GFSVFPYTLDGQGD----------- 112 (181)
T ss_pred CCCccCCC-CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc-----CCEEEEEEeCCCCC-----------
Confidence 45677764 89999999987 77899999999999999999999997 38999999986632
Q ss_pred cccccCch-hhHHHHHhcCC--CCcceEEEECCCCcEEE
Q 008845 399 LALPFGDA-RKASLSRKFKV--SGIPMLVAIGPSGRTIT 434 (551)
Q Consensus 399 ~~~~~~~d-~~~~l~~~~~v--~~~P~~~lid~~G~i~~ 434 (551)
..||...+ ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 57787764 55667889995 69999999999999974
No 55
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.62 E-value=3e-15 Score=138.08 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=81.9
Q ss_pred CceeecccC-CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccc-cCChh
Q 008845 10 LLRVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP-FSDSE 86 (551)
Q Consensus 10 ~~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~-~~~~~ 86 (551)
|+.++++++ +|| ++|+|||+||++|+.++|.|.++++ + ++.|++|+.+++.+.+.+|+++++..+.. +.|..
T Consensus 57 g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~-~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 131 (185)
T PRK15412 57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q-GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGD 131 (185)
T ss_pred CccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c-CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCC
Confidence 455666655 799 9999999999999999999998864 2 48899999988888899999998866553 33433
Q ss_pred hHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 87 TRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 87 ~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
..+...|++.++|++++||++|+++..
T Consensus 132 --~~~~~~~gv~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 132 --GMLGLDLGVYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred --ccHHHhcCCCcCCeEEEECCCceEEEE
Confidence 357789999999999999999999975
No 56
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.62 E-value=3e-15 Score=133.37 Aligned_cols=114 Identities=23% Similarity=0.453 Sum_probs=95.9
Q ss_pred Ccccee-cCCCCeeecccCC-CCEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC
Q 008845 320 DLDFVV-GKNGGKVPVSDLA-GKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 396 (551)
Q Consensus 320 ~~~f~~-~~~g~~v~l~~~~-gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 396 (551)
.|+|.+ +.+|+.++++++. ++++ |++||++||++|+.++|.|+++++++++. ++++|.|+.|.. +....|.+..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCH-HHHHHHHHhc
Confidence 478888 8999999999875 4555 55556999999999999999999999865 699999999865 4555777776
Q ss_pred CCcccccCchhhHHHHHhcCCC-----------------------------CcceEEEECCCCcEEEccc
Q 008845 397 PWLALPFGDARKASLSRKFKVS-----------------------------GIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 397 ~~~~~~~~~d~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~~ 437 (551)
+ +++|+..|++..+.+.|++. .+|+.+|||++|+|++.+.
T Consensus 79 ~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 79 F-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred C-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence 5 68999999999999999994 7999999999999998753
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.60 E-value=8.2e-15 Score=128.61 Aligned_cols=98 Identities=20% Similarity=0.417 Sum_probs=78.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
.||++||+|||+||++|+.+.|.|.++++++.++ +.++.|++|.+.. ..+++.|+|
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------------~~~~~~~~V 74 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------------LPEIDRYRV 74 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc---------------------HHHHHHcCC
Confidence 5899999999999999999999999999998754 7899998875421 257889999
Q ss_pred CCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhccCCcc
Q 008845 418 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 473 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~~~~~~ 473 (551)
.++|+++||+++|+++.+..+. .. .++|.+.|++++.+.|..
T Consensus 75 ~~iPt~v~~~~~G~~v~~~~G~-----------~~---~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 75 DGIPHFVFLDREGNEEGQSIGL-----------QP---KQVLAQNLDALVAGEPLP 116 (142)
T ss_pred CCCCEEEEECCCCCEEEEEeCC-----------CC---HHHHHHHHHHHHcCCCCC
Confidence 9999999999999999874321 11 255677777777765543
No 58
>PRK15000 peroxidase; Provisional
Probab=99.60 E-value=6.6e-15 Score=136.73 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=103.2
Q ss_pred cCCcccee-cC--CCCe---eecccC-CCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh--H
Q 008845 318 SGDLDFVV-GK--NGGK---VPVSDL-AGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ--T 387 (551)
Q Consensus 318 ~~~~~f~~-~~--~g~~---v~l~~~-~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~--~ 387 (551)
...|+|.+ +. +|+. ++++++ +||++||+||+. ||++|+.+++.|++++++++++ +++|++||+|... .
T Consensus 6 ~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~~ 83 (200)
T PRK15000 6 RQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVHN 83 (200)
T ss_pred CcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHH
Confidence 34589987 43 3453 455555 799999999985 9999999999999999999876 6999999998542 2
Q ss_pred HHHH-HHhcCC--CcccccCchhhHHHHHhcCCC------CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHH
Q 008845 388 SFDE-FFKGMP--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 458 (551)
Q Consensus 388 ~~~~-~~~~~~--~~~~~~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 458 (551)
.|.+ +.+..+ -+.+|+..|.+..+++.||+. ++|++||||++|+|++...... -.++++++
T Consensus 84 ~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~----------~~gr~~~e 153 (200)
T PRK15000 84 AWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDL----------PLGRNIDE 153 (200)
T ss_pred HHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCC----------CCCCCHHH
Confidence 2322 233333 368999999999999999997 7999999999999999754321 22346677
Q ss_pred HHHHHHHH
Q 008845 459 IDGQYNEM 466 (551)
Q Consensus 459 l~~~l~~~ 466 (551)
+++.++.+
T Consensus 154 ilr~l~al 161 (200)
T PRK15000 154 MLRMVDAL 161 (200)
T ss_pred HHHHHHHh
Confidence 77776654
No 59
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=8.8e-15 Score=167.18 Aligned_cols=116 Identities=26% Similarity=0.354 Sum_probs=99.5
Q ss_pred CCcccee-c--CCCCeeec-ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC---CC--ChHHH
Q 008845 319 GDLDFVV-G--KNGGKVPV-SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS---DR--DQTSF 389 (551)
Q Consensus 319 ~~~~f~~-~--~~g~~v~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~---d~--~~~~~ 389 (551)
..|+|.. + .+|+++++ ++++||+|||+|||+||++|+.++|.|++++++|+++ ++.||.|+. |. +.+.+
T Consensus 396 ~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~~ 473 (1057)
T PLN02919 396 KVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEAI 473 (1057)
T ss_pred cCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHHH
Confidence 3478865 3 68888987 6899999999999999999999999999999999765 699999974 32 45778
Q ss_pred HHHHhcCCCcccccCchhhHHHHHhcCCCCcceEEEECCCCcEEEccc
Q 008845 390 DEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 390 ~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 437 (551)
++++.+++ +.+|+..|....+.+.|+|.++|+++|||++|+++.+..
T Consensus 474 ~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 474 RNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred HHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEe
Confidence 88998887 677888888889999999999999999999999998843
No 60
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.59 E-value=2.5e-15 Score=134.13 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=82.0
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHHhh-CCCC
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYFSK-MPWL 78 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~~-~~~~ 78 (551)
..|+++++++++|| |+|+|||+||+ |+.++|.|+++++++++.+ +.+++|+++ .+.+.+++|+++ .+..
T Consensus 10 ~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~ 87 (152)
T cd00340 10 IDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG-LVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT 87 (152)
T ss_pred CCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC-EEEEEeccCccccCCCCCHHHHHHHHHHhcCCC
Confidence 57889999999999 99999999999 9999999999999998764 999999875 346789999987 6655
Q ss_pred ccccCChhhH-HHHHhhcC--CCCCc-----------EEEEEcCCCeEEEc
Q 008845 79 AVPFSDSETR-DKLDELFK--VMGIP-----------HLVILDENGKVLSD 115 (551)
Q Consensus 79 ~~~~~~~~~~-~~l~~~~~--v~~~P-----------~~~lid~~G~i~~~ 115 (551)
++.+.+.+.. ......|+ +.++| +++|||++|+++.+
T Consensus 88 fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~ 138 (152)
T cd00340 88 FPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR 138 (152)
T ss_pred ceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence 4444331111 11233344 35556 89999999999985
No 61
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.59 E-value=1.1e-14 Score=138.89 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=105.7
Q ss_pred ccCCcccee-c-CCC--CeeecccC-CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHH
Q 008845 317 VSGDLDFVV-G-KNG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 390 (551)
Q Consensus 317 ~~~~~~f~~-~-~~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~ 390 (551)
....|+|.+ + .+| ..++++++ +||++||+|| +.||++|..+++.|++++++++++ +++|++||+|.. ...+
T Consensus 71 Gd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~-~~h~ 147 (261)
T PTZ00137 71 GKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSP-FSHK 147 (261)
T ss_pred CCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCH-HHHH
Confidence 344689986 4 344 46899998 8888888888 899999999999999999999876 699999999863 3334
Q ss_pred HHHh----cC--CCcccccCchhhHHHHHhcCCC-----CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHH
Q 008845 391 EFFK----GM--PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 459 (551)
Q Consensus 391 ~~~~----~~--~~~~~~~~~d~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 459 (551)
+|.+ +. ..+.+|++.|.+..+++.||+. ..|++||||++|+|++....+. -.+++++++
T Consensus 148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~----------~~gr~v~ei 217 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL----------GLGRSVDET 217 (261)
T ss_pred HHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCC----------CCCCCHHHH
Confidence 4433 22 3467999999999999999995 5899999999999999853221 233466777
Q ss_pred HHHHHHH
Q 008845 460 DGQYNEM 466 (551)
Q Consensus 460 ~~~l~~~ 466 (551)
.+.|+.+
T Consensus 218 Lr~l~al 224 (261)
T PTZ00137 218 LRLFDAV 224 (261)
T ss_pred HHHHHHh
Confidence 7776654
No 62
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.58 E-value=1.7e-14 Score=133.97 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=82.7
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHHhhCCCCc
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYFSKMPWLA 79 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~~~~~~~ 79 (551)
.+|+.+++++++|| +||+|||+||++|+.++|.|+++++++++.| +.|++|+++ .+.+.+++|+++++..+
T Consensus 27 ~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g-~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~f 105 (199)
T PTZ00056 27 LEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG-LEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKY 105 (199)
T ss_pred CCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc-eEEEEecchhccCCCCCCHHHHHHHHHHcCCCc
Confidence 46889999999999 9999999999999999999999999998875 999999874 46788999999988655
Q ss_pred cccCC----hhhHHH--------HHhhcCCC----CC---cEEEEEcCCCeEEEc
Q 008845 80 VPFSD----SETRDK--------LDELFKVM----GI---PHLVILDENGKVLSD 115 (551)
Q Consensus 80 ~~~~~----~~~~~~--------l~~~~~v~----~~---P~~~lid~~G~i~~~ 115 (551)
..+.+ ...... +...|++. ++ |+++|||++|+|+.+
T Consensus 106 pvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~ 160 (199)
T PTZ00056 106 NFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAY 160 (199)
T ss_pred eeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEE
Confidence 54432 111111 12234332 23 379999999999975
No 63
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.7e-14 Score=145.38 Aligned_cols=184 Identities=22% Similarity=0.355 Sum_probs=129.8
Q ss_pred CCcEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCc
Q 008845 178 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 257 (551)
Q Consensus 178 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v 257 (551)
.+..+.+.|+++||++|..+.|.+.++...++++ +.+..+|.++ ++.+++.|++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-----~~~~~vd~~~---------------------~~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-----VKIGAVDCDE---------------------HKDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-----eEEEEeCchh---------------------hHHHHHhcCC
Confidence 4567889999999999999999999999999984 6778888876 7899999999
Q ss_pred CCcceEEEECCCCCcccccchhhhhhcCCCCCCCChhhHHHHHHHHHHHHhhhhhhhhhccCCcccee-cCCCCeeeccc
Q 008845 258 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GKNGGKVPVSD 336 (551)
Q Consensus 258 ~~~P~lvi~~~~gk~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~~g~~v~l~~ 336 (551)
.++||+.++.++.+.... .+ +-+.+.+.++............... .-+.+ ..+...+....
T Consensus 100 ~gfPtl~~f~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~l~~~~~~~~~~~~ 161 (383)
T KOG0191|consen 100 QGFPTLKVFRPGKKPIDY--------SG----PRNAESLAEFLIKELEPSVKKLVEG------EVFELTKDNFDETVKDS 161 (383)
T ss_pred ccCcEEEEEcCCCceeec--------cC----cccHHHHHHHHHHhhccccccccCC------ceEEccccchhhhhhcc
Confidence 999999999876222211 11 2245566555544332111111111 11222 23333222222
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008845 337 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 416 (551)
Q Consensus 337 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 416 (551)
....+|.||+|||++|+.++|.+.++...++. ...+.+..++.+.. ..++..++
T Consensus 162 --~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~-----------------------~~~~~~~~ 215 (383)
T KOG0191|consen 162 --DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVH-----------------------KSLASRLE 215 (383)
T ss_pred --CcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchH-----------------------HHHhhhhc
Confidence 56899999999999999999999999998864 23567766655422 36889999
Q ss_pred CCCcceEEEECCCCc
Q 008845 417 VSGIPMLVAIGPSGR 431 (551)
Q Consensus 417 v~~~P~~~lid~~G~ 431 (551)
|+++|++.++.++..
T Consensus 216 v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE 230 (383)
T ss_pred ccCCceEEEecCCCc
Confidence 999999999966666
No 64
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.58 E-value=1.2e-14 Score=136.38 Aligned_cols=138 Identities=12% Similarity=0.200 Sum_probs=107.0
Q ss_pred ccCCcccee-cCCCCeeec-ccCCCCEEEE-EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChH--HHHH
Q 008845 317 VSGDLDFVV-GKNGGKVPV-SDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SFDE 391 (551)
Q Consensus 317 ~~~~~~f~~-~~~g~~v~l-~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~--~~~~ 391 (551)
....|+|.+ +.+|+ +.+ ++++||+++| +||++||+.|..+++.|++++++|+++ +++|++||+|.... +|.+
T Consensus 10 G~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~ 86 (215)
T PRK13191 10 GEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVM 86 (215)
T ss_pred CCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHh
Confidence 344689988 77776 555 5589997666 778999999999999999999999876 69999999997532 4555
Q ss_pred HHhcC-C-CcccccCchhhHHHHHhcCCC-------CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHH
Q 008845 392 FFKGM-P-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 462 (551)
Q Consensus 392 ~~~~~-~-~~~~~~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 462 (551)
++++. + -+.+|+..|.++.+++.||+. ..|++||||++|+|++...... ..+++++++.+.
T Consensus 87 ~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~----------~~gr~~~eilr~ 156 (215)
T PRK13191 87 WIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPM----------EIGRNIDEILRA 156 (215)
T ss_pred hHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCC----------CCCCCHHHHHHH
Confidence 55532 2 377899999999999999974 4799999999999999743221 233577788777
Q ss_pred HHHHh
Q 008845 463 YNEMA 467 (551)
Q Consensus 463 l~~~~ 467 (551)
|+.+.
T Consensus 157 l~alq 161 (215)
T PRK13191 157 IRALQ 161 (215)
T ss_pred HHHhh
Confidence 77653
No 65
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.57 E-value=1.1e-14 Score=137.32 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=82.1
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHH-hhCCCC
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYF-SKMPWL 78 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~-~~~~~~ 78 (551)
.+|+.+++++++|| +||+|||+||++|+.++|.|++++++++++| +.|++|+++ .+.+++++|+ ++++..
T Consensus 87 ~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G-v~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~ 165 (236)
T PLN02399 87 IDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKQFACTRFKAE 165 (236)
T ss_pred CCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC-cEEEEEecccccccCCCCHHHHHHHHHHhcCCC
Confidence 46889999999999 9999999999999999999999999999875 999999975 3567888997 466655
Q ss_pred ccccCChhhH-HHHHhh-------cC------CCCCcEEEEEcCCCeEEEc
Q 008845 79 AVPFSDSETR-DKLDEL-------FK------VMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 79 ~~~~~~~~~~-~~l~~~-------~~------v~~~P~~~lid~~G~i~~~ 115 (551)
+..+.+.+.. ..+... ++ +...|+++|||++|+++.+
T Consensus 166 fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 166 FPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER 216 (236)
T ss_pred CccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence 4444221110 112222 22 3557999999999999985
No 66
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.57 E-value=1.8e-14 Score=134.76 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=101.8
Q ss_pred CCcccee-cCCCCeeecccCCC-CEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHh-
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAG-KTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK- 394 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~- 394 (551)
..|+|.+ +.+| .+++++++| |++ |+.||++|||.|..+++.|++++++++++ +++|++||+|.. ....++.+
T Consensus 4 ~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~-~~~~~~~~~ 79 (203)
T cd03016 4 TAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSV-ESHIKWIED 79 (203)
T ss_pred CCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCH-HHHHHHHhh
Confidence 3588988 6666 689999998 655 55888999999999999999999999876 699999999864 33333333
Q ss_pred --cC--CCcccccCchhhHHHHHhcCCC----C----cceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHH
Q 008845 395 --GM--PWLALPFGDARKASLSRKFKVS----G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 462 (551)
Q Consensus 395 --~~--~~~~~~~~~d~~~~l~~~~~v~----~----~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 462 (551)
++ ..+.||+..|.+..+++.||+. + .|++||||++|+|+....... -.++.++++.+.
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~----------~~gr~~~ell~~ 149 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPA----------TTGRNFDEILRV 149 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCC----------CCCCCHHHHHHH
Confidence 21 2378899999999999999986 2 457999999999998843221 123346667777
Q ss_pred HHHHh
Q 008845 463 YNEMA 467 (551)
Q Consensus 463 l~~~~ 467 (551)
|+++.
T Consensus 150 l~~lq 154 (203)
T cd03016 150 VDALQ 154 (203)
T ss_pred HHHHh
Confidence 76643
No 67
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.56 E-value=4.3e-14 Score=129.30 Aligned_cols=105 Identities=27% Similarity=0.484 Sum_probs=92.7
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChh
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE 86 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (551)
.+|+.+++++++|| ++|+||++||++|+...|.+.++++++.+. ++.++.|+.|.+.+.+..|+++++..+..+.+..
T Consensus 49 ~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~ 127 (173)
T PRK03147 49 LEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKG 127 (173)
T ss_pred CCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCc
Confidence 46788999999999 999999999999999999999999999876 4899999999999999999999887655555443
Q ss_pred hHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 87 TRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 87 ~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
..+.+.|++.++|+++++|++|+++..
T Consensus 128 --~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 128 --RQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred --chHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 468899999999999999999999864
No 68
>PLN02412 probable glutathione peroxidase
Probab=99.56 E-value=9.1e-15 Score=132.33 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=80.3
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHH-hhCCCC
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYF-SKMPWL 78 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~-~~~~~~ 78 (551)
.+|+.+++++++|| +||+||++||++|+.++|.|+++++++++.| +.|++|+++ .+.+.+.+++ ++++..
T Consensus 17 ~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g-~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (167)
T PLN02412 17 IGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG-FEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE 95 (167)
T ss_pred CCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC-cEEEEecccccccCCCCCHHHHHHHHHHccCCC
Confidence 57889999999999 9999999999999999999999999999875 999999975 2445655554 665654
Q ss_pred ccccCC--hhhHHHHHhhc-----------C--CCCCcEEEEEcCCCeEEEc
Q 008845 79 AVPFSD--SETRDKLDELF-----------K--VMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 79 ~~~~~~--~~~~~~l~~~~-----------~--v~~~P~~~lid~~G~i~~~ 115 (551)
+..+.+ ... ......| + +.+.|+++|||++|+++..
T Consensus 96 fpvl~~~d~~g-~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~ 146 (167)
T PLN02412 96 FPIFDKVDVNG-KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQR 146 (167)
T ss_pred CceEeEEeeCC-CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEE
Confidence 444331 111 0122222 1 6678999999999999985
No 69
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.55 E-value=3.4e-14 Score=132.55 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=104.6
Q ss_pred cCCcccee-----cCCCCeeecccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHH
Q 008845 318 SGDLDFVV-----GKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 391 (551)
Q Consensus 318 ~~~~~f~~-----~~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~ 391 (551)
...|+|.+ +.+|+++++++++||+++|+||+ .||++|..+++.|.+++++++++ +++||+||+|.... ...
T Consensus 10 ~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~-~~~ 86 (199)
T PTZ00253 10 HPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYA-HLQ 86 (199)
T ss_pred CcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHH-HHH
Confidence 34588874 35678999999999999999995 88999999999999999999876 79999999986532 222
Q ss_pred HHhc------CCCcccccCchhhHHHHHhcCCC------CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHH
Q 008845 392 FFKG------MPWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 459 (551)
Q Consensus 392 ~~~~------~~~~~~~~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 459 (551)
+... .+-+.+|+..|.++++++.||+. .+|+.||||++|+|+....... + .++.++++
T Consensus 87 ~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~---------~-~~r~~~e~ 156 (199)
T PTZ00253 87 WTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDM---------P-VGRNVEEV 156 (199)
T ss_pred HHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCC---------C-CCCCHHHH
Confidence 2211 22478999999999999999985 4699999999999998743211 1 34456666
Q ss_pred HHHHHHH
Q 008845 460 DGQYNEM 466 (551)
Q Consensus 460 ~~~l~~~ 466 (551)
.+.|+.+
T Consensus 157 l~~l~a~ 163 (199)
T PTZ00253 157 LRLLEAF 163 (199)
T ss_pred HHHHHhh
Confidence 6666543
No 70
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.55 E-value=2.5e-14 Score=118.57 Aligned_cols=75 Identities=17% Similarity=0.413 Sum_probs=63.5
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008845 337 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 416 (551)
Q Consensus 337 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 416 (551)
.+||+|||+|||+||++|+.+.|.|+++++++ . ++.++.|++|.+.. ...+++.|+
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~--------------------~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDS--------------------TMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChH--------------------HHHHHHHcC
Confidence 35899999999999999999999999999888 3 37888888876531 136889999
Q ss_pred CCCcceEEEECCCCcEEEcc
Q 008845 417 VSGIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 417 v~~~P~~~lid~~G~i~~~~ 436 (551)
|+++||++++ ++|+++.+.
T Consensus 69 V~~~Pt~~~~-~~G~~v~~~ 87 (103)
T cd02985 69 IIEVPHFLFY-KDGEKIHEE 87 (103)
T ss_pred CCcCCEEEEE-eCCeEEEEE
Confidence 9999999888 899998773
No 71
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.55 E-value=3.4e-14 Score=117.54 Aligned_cols=72 Identities=11% Similarity=0.296 Sum_probs=65.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++|||+|||+||+||+.+.|.|.++++++++. +.++.|++|..+ ++++.|+|+
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~-----------------------~la~~~~V~ 67 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP-----------------------DFNKMYELY 67 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 689999999999999999999999999998754 788888888775 699999999
Q ss_pred CcceEEEECCCCcEEEccc
Q 008845 419 GIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~ 437 (551)
++||++++ ++|+.+.+..
T Consensus 68 ~iPTf~~f-k~G~~v~~~~ 85 (114)
T cd02954 68 DPPTVMFF-FRNKHMKIDL 85 (114)
T ss_pred CCCEEEEE-ECCEEEEEEc
Confidence 99999999 7999998853
No 72
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.54 E-value=7.9e-14 Score=145.15 Aligned_cols=103 Identities=20% Similarity=0.331 Sum_probs=84.0
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-----CCHHHHHHHHhhCCCCccc
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAFKGYFSKMPWLAVP 81 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~ 81 (551)
.+|+++.++ +|| |||+|||+||++|+.++|.|++++++++.. ++.|+.|+.+ .+.+.++++++..++..++
T Consensus 46 ~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~p 122 (521)
T PRK14018 46 NRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLP 122 (521)
T ss_pred CCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccc
Confidence 456677776 799 999999999999999999999999999865 4889999863 3456788888877765444
Q ss_pred c-CChhhHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 82 F-SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 82 ~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
+ .|.. ..+.+.|+|.++|+++|||++|+++..
T Consensus 123 V~~D~~--~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 123 VLTDNG--GTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred eecccc--HHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 3 3333 468999999999999999999999974
No 73
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.53 E-value=2.2e-14 Score=128.22 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=82.1
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHHhh-CCCC
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYFSK-MPWL 78 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~~-~~~~ 78 (551)
.+|+++++++++|| +||+|||+||++|+..+|.|+++++++++.+ +.|++|+++ .+.+.+++|+++ ++..
T Consensus 10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~-~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~ 88 (153)
T TIGR02540 10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH-FNVLAFPCNQFGESEPDSSKEIESFARRNYGVT 88 (153)
T ss_pred CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC-eEEEEEeccccccCCCCCHHHHHHHHHHhcCCC
Confidence 57899999999999 9999999999999999999999999999774 999999852 456788999976 6665
Q ss_pred ccccCCh---hhHHHHHhhc---CCCCCcE----EEEEcCCCeEEEc
Q 008845 79 AVPFSDS---ETRDKLDELF---KVMGIPH----LVILDENGKVLSD 115 (551)
Q Consensus 79 ~~~~~~~---~~~~~l~~~~---~v~~~P~----~~lid~~G~i~~~ 115 (551)
++.+.+. +........| +..++|+ ++|||++|+++..
T Consensus 89 fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 89 FPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred CCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEE
Confidence 5544331 1001111122 2346898 9999999999985
No 74
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.53 E-value=9.1e-14 Score=117.39 Aligned_cols=105 Identities=30% Similarity=0.487 Sum_probs=92.5
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCC-HHHHHHHHhhCCCCccccCCh
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-DEAFKGYFSKMPWLAVPFSDS 85 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~~~~~~~~ 85 (551)
.+|+++++++++|| ++|+||++||++|+..++.+.++.+++... ++.++.|++|.. .+.++++++++++.+..+.+.
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD-GVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 45689999999999 999999999999999999999999999744 599999999986 999999999998666655555
Q ss_pred hhHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 86 ETRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 86 ~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
. ..+.+.|++.++|+++++|++|+++..
T Consensus 86 ~--~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 86 D--GELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred c--chHHHhcCcCccceEEEECCCCcEEEE
Confidence 3 468999999999999999999999874
No 75
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.53 E-value=5.9e-14 Score=120.79 Aligned_cols=103 Identities=30% Similarity=0.524 Sum_probs=91.1
Q ss_pred ccCceeecccCCCc-EEEEEecC-CCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCCh
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 85 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (551)
.+|+.+++++++|| ++|.||++ ||++|+..++.|++++++++.. ++.++.|+.| +.+.++++.++.+..+..+.|.
T Consensus 13 ~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d-~~~~~~~~~~~~~~~~~~~~D~ 90 (124)
T PF00578_consen 13 SDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTD-DPEEIKQFLEEYGLPFPVLSDP 90 (124)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESS-SHHHHHHHHHHHTCSSEEEEET
T ss_pred CCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccc-cccchhhhhhhhccccccccCc
Confidence 45789999999999 99999999 9999999999999999999977 4999999996 5668899999888666666665
Q ss_pred hhHHHHHhhcCCC------CCcEEEEEcCCCeEEE
Q 008845 86 ETRDKLDELFKVM------GIPHLVILDENGKVLS 114 (551)
Q Consensus 86 ~~~~~l~~~~~v~------~~P~~~lid~~G~i~~ 114 (551)
. ..+.+.|++. .+|+++|||++|+|++
T Consensus 91 ~--~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 91 D--GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp T--SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred c--hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 4 4689999999 9999999999999986
No 76
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.52 E-value=1.7e-13 Score=126.62 Aligned_cols=100 Identities=21% Similarity=0.347 Sum_probs=82.4
Q ss_pred ccCceeecc--cCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCC
Q 008845 8 ELLLRVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 84 (551)
Q Consensus 8 ~~~~~v~l~--~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
.+|+.++++ +++|| ++|+||++||++|+.++|.+.+++++. ++.+++|+. .+.++.++|+++++.....+..
T Consensus 60 ~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~----~~~vv~Is~-~~~~~~~~~~~~~~~~~~~~~~ 134 (189)
T TIGR02661 60 FDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE----ETDVVMISD-GTPAEHRRFLKDHELGGERYVV 134 (189)
T ss_pred CCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc----CCcEEEEeC-CCHHHHHHHHHhcCCCcceeec
Confidence 468889984 57899 999999999999999999999988754 256888884 4678899999998865444432
Q ss_pred hhhHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 85 SETRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 85 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
. .++.+.|++.++|+++++|++|+++..
T Consensus 135 ~---~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 135 S---AEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred h---hHHHHhccCCccceEEEECCCCeEEEc
Confidence 2 468899999999999999999999974
No 77
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.52 E-value=8.6e-14 Score=126.97 Aligned_cols=106 Identities=15% Similarity=0.270 Sum_probs=92.5
Q ss_pred ccCceeecccC-CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC-------CHHHHHHHHhhCCCC
Q 008845 8 ELLLRVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEAFKGYFSKMPWL 78 (551)
Q Consensus 8 ~~~~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~~~~~~~ 78 (551)
..|+.++++++ +|+ +||+||++||+.|...++.|.++++++.+. ++.+++|+.|. +.+.+++|+++.+..
T Consensus 12 ~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~ 90 (171)
T cd02969 12 TDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYP 90 (171)
T ss_pred CCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCC
Confidence 35779999998 888 999999999999999999999999999865 59999999875 578999999998877
Q ss_pred ccccCChhhHHHHHhhcCCCCCcEEEEEcCCCeEEEcC
Q 008845 79 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 116 (551)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 116 (551)
+..+.|.. ..+.+.|++..+|+++|+|++|+|+...
T Consensus 91 ~~~l~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 91 FPYLLDET--QEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred ceEEECCc--hHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 66566655 4688999999999999999999999763
No 78
>PRK13189 peroxiredoxin; Provisional
Probab=99.51 E-value=1.3e-13 Score=130.10 Aligned_cols=135 Identities=17% Similarity=0.249 Sum_probs=101.0
Q ss_pred cCCcccee-cCCCCeeeccc-CCCCEEE-EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHh
Q 008845 318 SGDLDFVV-GKNGGKVPVSD-LAGKTIL-LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 394 (551)
Q Consensus 318 ~~~~~f~~-~~~g~~v~l~~-~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 394 (551)
...|+|.+ +..| .+.+++ ++||+++ ++||+.||+.|..+++.|++++++++++ +++|++||+|... ...+|.+
T Consensus 13 ~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~-~h~aw~~ 88 (222)
T PRK13189 13 DKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVF-SHIKWVE 88 (222)
T ss_pred CcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHH-HHHHHHH
Confidence 45689988 6666 477776 5899655 5778999999999999999999999876 6999999998653 3333332
Q ss_pred ----cCC-CcccccCchhhHHHHHhcCCC-------CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHH
Q 008845 395 ----GMP-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 462 (551)
Q Consensus 395 ----~~~-~~~~~~~~d~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 462 (551)
..+ -+.||+..|.++.+++.||+. ..|++||||++|+|++...... ..++.++++.+.
T Consensus 89 ~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~----------~~gr~~~eilr~ 158 (222)
T PRK13189 89 WIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQ----------EVGRNMDEILRL 158 (222)
T ss_pred hHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCC----------CCCCCHHHHHHH
Confidence 222 367899999999999999985 4799999999999988743211 123345666666
Q ss_pred HHHH
Q 008845 463 YNEM 466 (551)
Q Consensus 463 l~~~ 466 (551)
|+.+
T Consensus 159 l~al 162 (222)
T PRK13189 159 VKAL 162 (222)
T ss_pred HHHh
Confidence 6654
No 79
>PHA02278 thioredoxin-like protein
Probab=99.51 E-value=1e-13 Score=113.92 Aligned_cols=77 Identities=12% Similarity=0.278 Sum_probs=63.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
.++++||+|||+||+||+.+.|.+.++++++..+ ..++.|++|.+.. + ...+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc------------------c-cHHHHHHCCC
Confidence 3789999999999999999999999998775432 6788888886521 0 1258999999
Q ss_pred CCcceEEEECCCCcEEEccc
Q 008845 418 SGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~~~ 437 (551)
+++||++++ ++|+.+.+..
T Consensus 71 ~~iPT~i~f-k~G~~v~~~~ 89 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKKYE 89 (103)
T ss_pred ccccEEEEE-ECCEEEEEEe
Confidence 999999999 7899998743
No 80
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.50 E-value=7e-14 Score=127.58 Aligned_cols=97 Identities=24% Similarity=0.417 Sum_probs=79.9
Q ss_pred eeecccC-CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCcccc-CChhhH
Q 008845 12 RVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF-SDSETR 88 (551)
Q Consensus 12 ~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~ 88 (551)
.++++++ +|| ++|+||++||++|+.++|.+++++++ ++.++.|+.+.+.+...+|+++++..+..+ .|..
T Consensus 54 ~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~-- 126 (173)
T TIGR00385 54 AYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPN-- 126 (173)
T ss_pred ccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCC--
Confidence 4555565 688 99999999999999999999988652 388999999877788889999988765533 3433
Q ss_pred HHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 89 DKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 89 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
..+.+.|++.++|++++||++|++++.
T Consensus 127 ~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 127 GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 358889999999999999999999975
No 81
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.50 E-value=7.1e-14 Score=123.35 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=63.4
Q ss_pred CCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchh
Q 008845 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 407 (551)
Q Consensus 328 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~ 407 (551)
.|+.+.+++ ..+|+|||+||++|++++|.|+++++++ ++.|++|++|.... ..+|...+.
T Consensus 43 ~G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~-----~~~Vi~Vs~d~~~~-----------~~fp~~~~~ 102 (153)
T TIGR02738 43 QGRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF-----GLPVYAFSLDGQGL-----------TGFPDPLPA 102 (153)
T ss_pred cchhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc-----CCcEEEEEeCCCcc-----------cccccccCC
Confidence 356666544 5599999999999999999999999887 27899999986431 123332222
Q ss_pred hHHH-HHhc---CCCCcceEEEECCCCcEEE
Q 008845 408 KASL-SRKF---KVSGIPMLVAIGPSGRTIT 434 (551)
Q Consensus 408 ~~~l-~~~~---~v~~~P~~~lid~~G~i~~ 434 (551)
.... .+.| ++.++|+++|||++|+++.
T Consensus 103 ~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 103 TPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred chHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 2233 3455 8899999999999988654
No 82
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=8.7e-14 Score=118.36 Aligned_cols=72 Identities=19% Similarity=0.555 Sum_probs=65.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+.+|+|+|||+||+||+.+.|.|+++..+|.++ +.+..|++|... +++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~-----------------------ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHP-----------------------ELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEcccccc-----------------------chHhhccee
Confidence 789999999999999999999999999999876 899999998775 699999999
Q ss_pred CcceEEEECCCCcEEEccc
Q 008845 419 GIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~ 437 (551)
++||++++ ++|..+.+..
T Consensus 115 avPtvlvf-knGe~~d~~v 132 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVDRFV 132 (150)
T ss_pred eeeEEEEE-ECCEEeeeec
Confidence 99999999 7999887643
No 83
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.49 E-value=1e-13 Score=127.52 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=80.3
Q ss_pred ccCceeecccCCCc-EE-EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC-------CHHHHHHHHh-hCCC
Q 008845 8 ELLLRVKLDSLKGK-IG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEAFKGYFS-KMPW 77 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vl-v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~~-~~~~ 77 (551)
.+|+.+++++++|| ++ +.+||+|||+|+.++|.|+++++++++.+ +.|++|+++. +.+.+.+|++ +++.
T Consensus 28 ~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g-v~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~ 106 (183)
T PTZ00256 28 IDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG-LEILAFPCNQFMEQEPWDEPEIKEYVQKKFNV 106 (183)
T ss_pred CCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC-cEEEEEecccccccCCCCHHHHHHHHHHhcCC
Confidence 47889999999999 54 55699999999999999999999998774 9999998752 4577888886 5565
Q ss_pred CccccCC--hh--hHHHHH------------hhcCCCCCcE---EEEEcCCCeEEEc
Q 008845 78 LAVPFSD--SE--TRDKLD------------ELFKVMGIPH---LVILDENGKVLSD 115 (551)
Q Consensus 78 ~~~~~~~--~~--~~~~l~------------~~~~v~~~P~---~~lid~~G~i~~~ 115 (551)
.++.+.+ .. ....+. ..+++.++|+ ++|||++|+|+.+
T Consensus 107 ~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 107 DFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred CCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 5444422 11 111222 1236778995 6999999999985
No 84
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.49 E-value=1.5e-13 Score=113.82 Aligned_cols=75 Identities=24% Similarity=0.516 Sum_probs=62.8
Q ss_pred ccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhh
Q 008845 16 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 94 (551)
Q Consensus 16 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (551)
++.+|+ ++|+|||+||++|+.++|.|.++++++. ++.++.|++|.+.. ...+++.
T Consensus 11 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~---------------------~~~l~~~ 66 (103)
T cd02985 11 KKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDS---------------------TMELCRR 66 (103)
T ss_pred HHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChH---------------------HHHHHHH
Confidence 334688 9999999999999999999999999983 47888888886532 1358899
Q ss_pred cCCCCCcEEEEEcCCCeEEEc
Q 008845 95 FKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 95 ~~v~~~P~~~lid~~G~i~~~ 115 (551)
|+|.++||++++ ++|+++.+
T Consensus 67 ~~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 67 EKIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred cCCCcCCEEEEE-eCCeEEEE
Confidence 999999998888 89998764
No 85
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.48 E-value=1.9e-13 Score=113.07 Aligned_cols=70 Identities=17% Similarity=0.376 Sum_probs=62.5
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.++ ++|+|||+||+||+.+.|.|.++++++++ .+.++.|++|...+ +.+.|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~------------------------la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPD------------------------FNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHH------------------------HHHHcCC
Confidence 466 99999999999999999999999999874 36788999997754 8999999
Q ss_pred CCCcEEEEEcCCCeEEEc
Q 008845 98 MGIPHLVILDENGKVLSD 115 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (551)
.++||++++ ++|+.+.+
T Consensus 67 ~~iPTf~~f-k~G~~v~~ 83 (114)
T cd02954 67 YDPPTVMFF-FRNKHMKI 83 (114)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 89999876
No 86
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.48 E-value=2.5e-13 Score=123.04 Aligned_cols=103 Identities=25% Similarity=0.247 Sum_probs=86.5
Q ss_pred ccCceeecccCCCc-EEEEEecCC-CHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCcc-ccCC
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAV-PFSD 84 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~-~~~~ 84 (551)
.+|+.+++++++|| ++|+||++| |++|..++|.|+++++++. ++.|+.|+.| +....++|.++.+...+ .+.|
T Consensus 32 ~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D-~~~~~~~f~~~~~~~~~~~lsD 107 (167)
T PRK00522 32 NDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD-LPFAQKRFCGAEGLENVITLSD 107 (167)
T ss_pred CCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC-CHHHHHHHHHhCCCCCceEeec
Confidence 46788999999999 999999999 9999999999999999983 4899999988 45678899999887643 3444
Q ss_pred hhhHHHHHhhcCCCCCc---------EEEEEcCCCeEEEc
Q 008845 85 SETRDKLDELFKVMGIP---------HLVILDENGKVLSD 115 (551)
Q Consensus 85 ~~~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~ 115 (551)
... ..+++.|++...| ++++||++|+|+..
T Consensus 108 ~~~-~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~ 146 (167)
T PRK00522 108 FRD-HSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYS 146 (167)
T ss_pred CCc-cHHHHHhCCeecccccCCceeeEEEEECCCCeEEEE
Confidence 322 3688999998877 99999999999985
No 87
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.48 E-value=2e-13 Score=112.96 Aligned_cols=71 Identities=13% Similarity=0.313 Sum_probs=61.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+|||+||++|+.+.|.|.++++.+++. .+.++.+++| .. ++++.|+|+
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~~-----------------------~~~~~~~v~ 70 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-TI-----------------------DTLKRYRGK 70 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-CH-----------------------HHHHHcCCC
Confidence 789999999999999999999999999988643 3677778777 33 478999999
Q ss_pred CcceEEEECCCCcEEEcc
Q 008845 419 GIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~ 436 (551)
++||++++ ++|+.+.+.
T Consensus 71 ~~Pt~~~~-~~g~~~~~~ 87 (102)
T cd02948 71 CEPTFLFY-KNGELVAVI 87 (102)
T ss_pred cCcEEEEE-ECCEEEEEE
Confidence 99999999 689988873
No 88
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.47 E-value=6.2e-13 Score=120.91 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=68.6
Q ss_pred cccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChHHHHHH
Q 008845 321 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDEF 392 (551)
Q Consensus 321 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d-------~~~~~~~~~ 392 (551)
.+|.+ +.+|+.+++++++||+|||.|||+||++|. .+|.|++++++|+++ +++|++++++ .+.+++++|
T Consensus 6 ~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~--gl~Vlg~p~nqf~~qe~~~~~ei~~f 82 (183)
T PRK10606 6 LTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ--GFVVLGFPCNQFLGQEPGSDEEIKTY 82 (183)
T ss_pred cCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC--CeEEEEeeccccccCCCCCHHHHHHH
Confidence 56777 899999999999999999999999999996 699999999999876 6999999985 355788899
Q ss_pred Hh-cCCCcccccC
Q 008845 393 FK-GMPWLALPFG 404 (551)
Q Consensus 393 ~~-~~~~~~~~~~ 404 (551)
++ +++ +.+|+.
T Consensus 83 ~~~~~g-~~Fpv~ 94 (183)
T PRK10606 83 CRTTWG-VTFPMF 94 (183)
T ss_pred HHHccC-CCceeE
Confidence 87 555 566765
No 89
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.47 E-value=4.8e-13 Score=119.16 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=87.8
Q ss_pred ccCceeecccCCC-c-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCC
Q 008845 8 ELLLRVKLDSLKG-K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 84 (551)
Q Consensus 8 ~~~~~v~l~~~~g-k-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
.+|+.+++++++| | ++|.|| ++||+.|...+|.|+++++++.+. ++.+++|+.| +.+.+++|.++++..+..+.|
T Consensus 15 ~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d-~~~~~~~~~~~~~~~~~~~~D 92 (149)
T cd03018 15 QNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVD-SPFSLRAWAEENGLTFPLLSD 92 (149)
T ss_pred CCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCC-CHHHHHHHHHhcCCCceEecC
Confidence 3688999999999 8 888887 999999999999999999999876 4899999987 466789999988876665666
Q ss_pred hhhHHHHHhhcCCCC----C--cEEEEEcCCCeEEEc
Q 008845 85 SETRDKLDELFKVMG----I--PHLVILDENGKVLSD 115 (551)
Q Consensus 85 ~~~~~~l~~~~~v~~----~--P~~~lid~~G~i~~~ 115 (551)
......+.+.|++.. + |+++++|++|+++..
T Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 93 FWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred CCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 442246888999873 3 489999999999985
No 90
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.46 E-value=2.5e-13 Score=121.69 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=69.7
Q ss_pred ccCceeecccCCCcEEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccc-cCChh
Q 008845 8 ELLLRVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP-FSDSE 86 (551)
Q Consensus 8 ~~~~~v~l~~~~gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~-~~~~~ 86 (551)
.+|+.+++++++ +|+||++||++|++++|.|++++++++ +.|+.|++|.+.+ ..++ +.+..
T Consensus 61 ~dG~~v~lsd~~---lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~-----------~~fPv~~dd~ 122 (181)
T PRK13728 61 SNGRQVNLADWK---VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGD-----------TAFPEALPAP 122 (181)
T ss_pred CCCCEeehhHce---EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCC-----------CCCceEecCc
Confidence 488999999987 778999999999999999999999983 8899999986532 2233 22211
Q ss_pred hHHHHHhhcCC--CCCcEEEEEcCCCeEEE
Q 008845 87 TRDKLDELFKV--MGIPHLVILDENGKVLS 114 (551)
Q Consensus 87 ~~~~l~~~~~v--~~~P~~~lid~~G~i~~ 114 (551)
. ..+...|++ .++|++|++|++|+++.
T Consensus 123 ~-~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 123 P-DVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred h-hHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 1 347778995 69999999999999864
No 91
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.46 E-value=2.4e-13 Score=119.34 Aligned_cols=80 Identities=25% Similarity=0.452 Sum_probs=66.5
Q ss_pred eeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHH
Q 008845 12 RVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 90 (551)
Q Consensus 12 ~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (551)
++..+...|+ ++|+|||+||++|+.++|.+.++++++.. .+.++.|++|.+.. ..
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~----------------------~~ 67 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKW----------------------LP 67 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCccc----------------------HH
Confidence 4444445788 99999999999999999999999999864 47888888885432 24
Q ss_pred HHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 91 LDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 91 l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
+.+.|+|.++|++++++++|+++.+
T Consensus 68 ~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 68 EIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred HHHHcCCCCCCEEEEECCCCCEEEE
Confidence 7789999999999999999999874
No 92
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.46 E-value=3.8e-13 Score=118.41 Aligned_cols=104 Identities=26% Similarity=0.318 Sum_probs=90.5
Q ss_pred ccCceeecccCCCc-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCCh
Q 008845 8 ELLLRVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 85 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (551)
.+|+.+++++++|| ++|+|| ++||+.|..++|.|.++++++.+. ++.+++|+.| +.+.+.+|.++++..+..+.|.
T Consensus 11 ~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d-~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd03017 11 QDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPD-SVESHAKFAEKYGLPFPLLSDP 88 (140)
T ss_pred CCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCC-CHHHHHHHHHHhCCCceEEECC
Confidence 35889999999999 999999 589999999999999999999876 4899999987 5678899999988766656665
Q ss_pred hhHHHHHhhcCCCCC---------cEEEEEcCCCeEEEc
Q 008845 86 ETRDKLDELFKVMGI---------PHLVILDENGKVLSD 115 (551)
Q Consensus 86 ~~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~ 115 (551)
+ ..+.+.|++... |+++++|++|+++..
T Consensus 89 ~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 89 D--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred c--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 5 468899999988 999999999999985
No 93
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.45 E-value=3e-13 Score=111.24 Aligned_cols=68 Identities=16% Similarity=0.376 Sum_probs=56.6
Q ss_pred ccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 16 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 16 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
++++|+ ++|+|||+||++|+.++|.|.++++.++ ++.++.|+.+ .. ..+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~------------------------~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIK------------------------PSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCC------------------------HHHHH
Confidence 467899 9999999999999999999999999986 3566766655 22 35889
Q ss_pred hcCCCCCcEEEEEcCCCe
Q 008845 94 LFKVMGIPHLVILDENGK 111 (551)
Q Consensus 94 ~~~v~~~P~~~lid~~G~ 111 (551)
.|+|.++||+++++ +|.
T Consensus 67 ~~~V~~~PT~~lf~-~g~ 83 (100)
T cd02999 67 RYGVVGFPTILLFN-STP 83 (100)
T ss_pred hcCCeecCEEEEEc-CCc
Confidence 99999999999995 553
No 94
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.45 E-value=2.8e-13 Score=122.21 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=75.4
Q ss_pred ceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEE------EEEeCCCCHHHHHHHH----hhCC--C
Q 008845 11 LRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV------IFVSGDEDDEAFKGYF----SKMP--W 77 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~v------v~v~~d~~~~~~~~~~----~~~~--~ 77 (551)
+.+++++++|| ++|+|||+||++|+.++|.+.++.++ ++.+ +.||.|+.......|+ ++.. .
T Consensus 50 ~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~ 124 (184)
T TIGR01626 50 QPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKEN 124 (184)
T ss_pred eeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccC
Confidence 46778999999 99999999999999999999999432 3667 8999987655544454 4433 3
Q ss_pred Ccc-ccCChhhHHHHHhhcCCCCCcEE-EEEcCCCeEEEc
Q 008845 78 LAV-PFSDSETRDKLDELFKVMGIPHL-VILDENGKVLSD 115 (551)
Q Consensus 78 ~~~-~~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~i~~~ 115 (551)
++. .+.|.. ..+...|++.++|++ +++|++|+|+..
T Consensus 125 P~~~vllD~~--g~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 125 PWSQVVLDDK--GAVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred CcceEEECCc--chHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 222 334443 357789999999988 899999999985
No 95
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.45 E-value=4.7e-13 Score=115.05 Aligned_cols=98 Identities=26% Similarity=0.447 Sum_probs=82.0
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC-CHHHHHHHHhhCCCCccccCCh
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWLAVPFSDS 85 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~-~~~~~~~~~~~~~~~~~~~~~~ 85 (551)
.+|+.++++.++|+ ++|+||++||++|+.++|.|.+++++ +.++.|+.+. +.+.+.++.++++..+..+.+.
T Consensus 8 ~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 8 LDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD------YPVVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred CCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh------CCEEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 45689999999999 99999999999999999999999876 3467777765 4788999999988655444444
Q ss_pred hhHHHHHhhcCCCCCcEEEEEcCCCeEEE
Q 008845 86 ETRDKLDELFKVMGIPHLVILDENGKVLS 114 (551)
Q Consensus 86 ~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 114 (551)
. ..+++.|++.++|+++++|++| ++.
T Consensus 82 ~--~~~~~~~~i~~~P~~~vid~~g-i~~ 107 (123)
T cd03011 82 D--GVISARWGVSVTPAIVIVDPGG-IVF 107 (123)
T ss_pred C--cHHHHhCCCCcccEEEEEcCCC-eEE
Confidence 3 4699999999999999999988 665
No 96
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.5e-13 Score=115.54 Aligned_cols=69 Identities=33% Similarity=0.747 Sum_probs=62.1
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
+. |+|+|||+||+||+.+.|.|+++..++. |.+.+..|++|+..+ ++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~e------------------------la~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPE------------------------LAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccc------------------------hHhhccee
Confidence 45 9999999999999999999999999996 468999999997755 99999999
Q ss_pred CCcEEEEEcCCCeEEEc
Q 008845 99 GIPHLVILDENGKVLSD 115 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~~ 115 (551)
++||++++ ++|+.+.+
T Consensus 115 avPtvlvf-knGe~~d~ 130 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVDR 130 (150)
T ss_pred eeeEEEEE-ECCEEeee
Confidence 99999999 89988853
No 97
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.44 E-value=4.1e-13 Score=110.42 Aligned_cols=68 Identities=19% Similarity=0.374 Sum_probs=56.6
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-CChHHHHHHHhcCCCcccccCchhhHHHHH
Q 008845 335 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEFFKGMPWLALPFGDARKASLSR 413 (551)
Q Consensus 335 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d-~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 413 (551)
++++||+++|+|||+||++|+.++|.|+++++++++ +.++.|+.+ .. ..+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~-----------------------~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIK-----------------------PSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCC-----------------------HHHHH
Confidence 356799999999999999999999999999998853 566666554 22 26899
Q ss_pred hcCCCCcceEEEECCC
Q 008845 414 KFKVSGIPMLVAIGPS 429 (551)
Q Consensus 414 ~~~v~~~P~~~lid~~ 429 (551)
.|+|+++||+++++++
T Consensus 67 ~~~V~~~PT~~lf~~g 82 (100)
T cd02999 67 RYGVVGFPTILLFNST 82 (100)
T ss_pred hcCCeecCEEEEEcCC
Confidence 9999999999999644
No 98
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.44 E-value=4e-13 Score=112.92 Aligned_cols=72 Identities=18% Similarity=0.439 Sum_probs=62.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
.|++++|+|||+||++|+.+.|.+.++.+++++. ++.++.|++|..+ .+++.|+|
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~-----------------------~l~~~~~V 77 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHER-----------------------RLARKLGA 77 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccH-----------------------HHHHHcCC
Confidence 5899999999999999999999999999999753 4777878777553 58899999
Q ss_pred CCcceEEEECCCCcEEEc
Q 008845 418 SGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~ 435 (551)
+++||++++ ++|+++.+
T Consensus 78 ~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 78 HSVPAIVGI-INGQVTFY 94 (111)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 58988776
No 99
>PHA02278 thioredoxin-like protein
Probab=99.43 E-value=5.8e-13 Score=109.48 Aligned_cols=74 Identities=19% Similarity=0.407 Sum_probs=60.9
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.++ ++|+|||+||+||+.+.|.+.++++++.. .+.++.|++|.+... ...+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d--------------------~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVD--------------------REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccc--------------------cHHHHHHCCC
Confidence 567 99999999999999999999999887543 367889998865210 0258899999
Q ss_pred CCCcEEEEEcCCCeEEEc
Q 008845 98 MGIPHLVILDENGKVLSD 115 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (551)
.++||++++ ++|+.+.+
T Consensus 71 ~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 78998875
No 100
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.43 E-value=7.6e-13 Score=116.95 Aligned_cols=103 Identities=23% Similarity=0.215 Sum_probs=84.4
Q ss_pred ccCceeecccCCCc-EEEEEecCC-CHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccc-cCC
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP-FSD 84 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~-~~~ 84 (551)
..|+.+++++++|| ++|+||++| |++|+.++|.|++++++++ ++.+++|+.|. .+..++|.++.+...++ +.+
T Consensus 14 ~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~-~~~~~~~~~~~~~~~~~~l~D 89 (143)
T cd03014 14 SDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL-PFAQKRWCGAEGVDNVTTLSD 89 (143)
T ss_pred CCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC-HHHHHHHHHhcCCCCceEeec
Confidence 46789999999999 999999998 6999999999999999974 48999999885 66778888888754344 344
Q ss_pred hhhHHHHHhhcCCCC------CcEEEEEcCCCeEEEc
Q 008845 85 SETRDKLDELFKVMG------IPHLVILDENGKVLSD 115 (551)
Q Consensus 85 ~~~~~~l~~~~~v~~------~P~~~lid~~G~i~~~ 115 (551)
.. ...+.+.|++.. .|++++||++|+|+..
T Consensus 90 ~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~ 125 (143)
T cd03014 90 FR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYV 125 (143)
T ss_pred Cc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEE
Confidence 32 146888999863 6999999999999985
No 101
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.4e-13 Score=110.18 Aligned_cols=70 Identities=24% Similarity=0.554 Sum_probs=62.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+|.++|+|+|+|||||+.+.|.+.+++.+|.+ +.++.|++|.. .++++.|+|+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~-----------------------~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDEL-----------------------EEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccC-----------------------HhHHHhcCce
Confidence 69999999999999999999999999999864 67888888763 2689999999
Q ss_pred CcceEEEECCCCcEEEcc
Q 008845 419 GIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~ 436 (551)
.+||++++ ++|+.+.+.
T Consensus 74 ~~PTf~f~-k~g~~~~~~ 90 (106)
T KOG0907|consen 74 AMPTFVFY-KGGEEVDEV 90 (106)
T ss_pred EeeEEEEE-ECCEEEEEE
Confidence 99999999 889888873
No 102
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.42 E-value=2.2e-12 Score=117.79 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=80.9
Q ss_pred ceeecccCCCc-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhh-------CCCCccc
Q 008845 11 LRVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK-------MPWLAVP 81 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~-------~~~~~~~ 81 (551)
+.+++++++|| +||+|| ++||++|...+|.|+++++++.+. ++.++.|+.|.. +....|.+. .++.+..
T Consensus 20 ~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~-~~~~~~~~~~~~~~~~~~~~f~~ 97 (173)
T cd03015 20 KEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSH-FSHLAWRNTPRKEGGLGKINFPL 97 (173)
T ss_pred eEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCH-HHHHHHHHhhhhhCCccCcceeE
Confidence 68999999999 999999 899999999999999999999876 489999998853 333445443 2344444
Q ss_pred cCChhhHHHHHhhcCCC------CCcEEEEEcCCCeEEEc
Q 008845 82 FSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 82 ~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 115 (551)
+.|.. ..+.+.|++. .+|+++|||++|+|+..
T Consensus 98 l~D~~--~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~ 135 (173)
T cd03015 98 LADPK--KKISRDYGVLDEEEGVALRGTFIIDPEGIIRHI 135 (173)
T ss_pred EECCc--hhHHHHhCCccccCCceeeEEEEECCCCeEEEE
Confidence 45544 4688999986 57899999999999985
No 103
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.42 E-value=1.4e-12 Score=106.76 Aligned_cols=71 Identities=17% Similarity=0.392 Sum_probs=61.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
+++++||+||++||++|+.+.|.++++++.+.+. +.++.|++|... .+++.|+|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQP-----------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999988653 777777777654 68999999
Q ss_pred CCcceEEEECCCCcEEEc
Q 008845 418 SGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~ 435 (551)
+++|++++++ +|+++.+
T Consensus 65 ~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 65 QALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCEEEEEe-CCEEeee
Confidence 9999999995 8988765
No 104
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.42 E-value=8e-13 Score=116.65 Aligned_cols=108 Identities=26% Similarity=0.396 Sum_probs=88.7
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHh-hHhhhHHHHHHHHHhcCCC--CEEEEEEeCCC---CHHHHHHHHhhCCCCcc
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGYFSKMPWLAV 80 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~~~--~~~vv~v~~d~---~~~~~~~~~~~~~~~~~ 80 (551)
.+|+.+++++++|| ++|+||++||++ |...++.|+++++++++.+ ++.+++|+.|. +.+.+++|+++++..+.
T Consensus 10 ~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~~~~ 89 (142)
T cd02968 10 QDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGPGWI 89 (142)
T ss_pred CCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCCCcE
Confidence 57789999999999 999999999997 9999999999999998753 59999999874 46789999999875554
Q ss_pred ccCChh-hHHHHHhhcCCCCC--------------cEEEEEcCCCeEEEc
Q 008845 81 PFSDSE-TRDKLDELFKVMGI--------------PHLVILDENGKVLSD 115 (551)
Q Consensus 81 ~~~~~~-~~~~l~~~~~v~~~--------------P~~~lid~~G~i~~~ 115 (551)
.+.+.. ....+.+.|++... |+++|||++|+|+..
T Consensus 90 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 90 GLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred EEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 444433 33578889987543 578999999999874
No 105
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=1.2e-12 Score=149.84 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=88.9
Q ss_pred cCceeec-ccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeC---C--CCHHHHHHHHhhCCCCccc
Q 008845 9 LLLRVKL-DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---D--EDDEAFKGYFSKMPWLAVP 81 (551)
Q Consensus 9 ~~~~v~l-~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~---d--~~~~~~~~~~~~~~~~~~~ 81 (551)
+|+++++ ++++|| |||+|||+||++|+.++|.|++++++++++ ++.|+.|+. | .+.+.+++++.+++..+..
T Consensus 408 ~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pv 486 (1057)
T PLN02919 408 NTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPV 486 (1057)
T ss_pred CCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccE
Confidence 4677887 689999 999999999999999999999999999876 489999873 3 2567889999998877766
Q ss_pred cCChhhHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 82 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 82 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
+.|.. ..+.+.|++.++|+++|||++|+++.+
T Consensus 487 v~D~~--~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 487 VNDGD--MYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred EECCc--hHHHHhcCCCccceEEEECCCCeEEEE
Confidence 66554 368899999999999999999999875
No 106
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.41 E-value=1.8e-12 Score=119.62 Aligned_cols=104 Identities=24% Similarity=0.259 Sum_probs=81.8
Q ss_pred ccCc--eeecccCCCc-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhC----CCCc
Q 008845 8 ELLL--RVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM----PWLA 79 (551)
Q Consensus 8 ~~~~--~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~----~~~~ 79 (551)
.+|+ .+++++++|| +||+|| ++||++|..++|.|+++++++.+.+ +.|++|+.|. ....+.|.+.. +..+
T Consensus 17 ~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g-v~vi~VS~D~-~~~~~~~~~~~~~~~~l~f 94 (187)
T TIGR03137 17 HNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG-VEVYSVSTDT-HFVHKAWHDTSEAIGKITY 94 (187)
T ss_pred cCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC-CcEEEEeCCC-HHHHHHHHhhhhhccCcce
Confidence 3455 6888899999 999999 9999999999999999999998764 8999999885 34445554432 2333
Q ss_pred cccCChhhHHHHHhhcCCC------CCcEEEEEcCCCeEEEc
Q 008845 80 VPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 80 ~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 115 (551)
..+.|.. ..+++.|++. ..|++++||++|+|+..
T Consensus 95 pllsD~~--~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~ 134 (187)
T TIGR03137 95 PMLGDPT--GVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAV 134 (187)
T ss_pred eEEECCc--cHHHHHhCCcccCCCceeeEEEEECCCCEEEEE
Confidence 3345543 5788999986 46999999999999985
No 107
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.41 E-value=1.8e-12 Score=111.66 Aligned_cols=87 Identities=26% Similarity=0.487 Sum_probs=65.7
Q ss_pred CC-CEEEEEEecCCChhHHhhhHHHH---HHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH
Q 008845 338 AG-KTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 413 (551)
Q Consensus 338 ~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 413 (551)
.| |+|+|+||++||++|+.+.|.+. ++.+.+++ ++.++.|++|.+.... . ++........+++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~~ 78 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-D---------FDGEALSEKELAR 78 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-c---------cCCCCccHHHHHH
Confidence 37 99999999999999999999885 55556654 3888888887653211 1 1111223467899
Q ss_pred hcCCCCcceEEEECCC-CcEEEccc
Q 008845 414 KFKVSGIPMLVAIGPS-GRTITKEA 437 (551)
Q Consensus 414 ~~~v~~~P~~~lid~~-G~i~~~~~ 437 (551)
.|+|.++|++++++++ |+++.+..
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~~ 103 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARLP 103 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEec
Confidence 9999999999999999 89988743
No 108
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.39 E-value=1.7e-12 Score=116.28 Aligned_cols=104 Identities=23% Similarity=0.299 Sum_probs=87.8
Q ss_pred ccCceeecccCCCc-EEEEEecC-CCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCCh
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 85 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (551)
..|+.+++++++|| +||+||++ ||+.|+.+++.|+++++++++.+ +.+++|+.| +.+.+++|+++++..+..+.|.
T Consensus 18 ~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~-v~vi~Is~d-~~~~~~~~~~~~~~~~~~l~D~ 95 (154)
T PRK09437 18 QDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG-VVVLGISTD-KPEKLSRFAEKELLNFTLLSDE 95 (154)
T ss_pred CCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCC-CHHHHHHHHHHhCCCCeEEECC
Confidence 35788999999999 99999976 68889999999999999998774 999999988 5688999999988766655554
Q ss_pred hhHHHHHhhcCCCCC------------cEEEEEcCCCeEEEc
Q 008845 86 ETRDKLDELFKVMGI------------PHLVILDENGKVLSD 115 (551)
Q Consensus 86 ~~~~~l~~~~~v~~~------------P~~~lid~~G~i~~~ 115 (551)
. ..+.+.|++... |+++|||++|+|+..
T Consensus 96 ~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 96 D--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred C--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 4 468889998654 678999999999985
No 109
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.39 E-value=1e-12 Score=108.76 Aligned_cols=70 Identities=17% Similarity=0.383 Sum_probs=59.5
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.|+ ++|+|||+||++|+.++|.+.++++++++. .+.++.++.| +. .++++|+|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d-~~------------------------~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEAD-TI------------------------DTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCC-CH------------------------HHHHHcCC
Confidence 477 999999999999999999999999998743 3677788777 32 37899999
Q ss_pred CCCcEEEEEcCCCeEEEc
Q 008845 98 MGIPHLVILDENGKVLSD 115 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (551)
.++|+++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 70 KCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CcCcEEEEE-ECCEEEEE
Confidence 999999888 78988764
No 110
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.39 E-value=2.5e-12 Score=108.06 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=61.6
Q ss_pred CCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcC
Q 008845 18 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 96 (551)
Q Consensus 18 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (551)
..|+ ++|+||||||++|+.+.|.+.+++++++.. ++.++.|+++.+. .++..|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~------------------------~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHER------------------------RLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccH------------------------HHHHHcC
Confidence 3678 999999999999999999999999999754 4778888877553 4889999
Q ss_pred CCCCcEEEEEcCCCeEEEc
Q 008845 97 VMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (551)
|.++|+++++ ++|+++.+
T Consensus 77 V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 77 AHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 68887764
No 111
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.38 E-value=1e-12 Score=116.04 Aligned_cols=78 Identities=19% Similarity=0.404 Sum_probs=56.7
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhc---CCC
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF---KVM 98 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~v~ 98 (551)
.+|+|||+||++|++++|.+++++++++ +.|++|+.|.... ..++ ..+.... ..+...| ++.
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~------~~fp---~~~~~~~--~~~~~~~~~~~v~ 117 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGL------TGFP---DPLPATP--EVMQTFFPNPRPV 117 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcc------cccc---cccCCch--HHHHHHhccCCCC
Confidence 7999999999999999999999999873 6788999886431 1111 1111111 1233455 889
Q ss_pred CCcEEEEEcCCCeEEE
Q 008845 99 GIPHLVILDENGKVLS 114 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~ 114 (551)
++|+++++|++|+++.
T Consensus 118 ~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 118 VTPATFLVNVNTRKAY 133 (153)
T ss_pred CCCeEEEEeCCCCEEE
Confidence 9999999999988654
No 112
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.38 E-value=1.5e-12 Score=107.65 Aligned_cols=71 Identities=23% Similarity=0.413 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
.+++++|+||++||++|+.+.|.+.++++++++. +.++.|++|..+ .+++.|+|
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v 70 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDR-----------------------MLCRSQGV 70 (101)
T ss_pred CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccH-----------------------HHHHHcCC
Confidence 3689999999999999999999999999998754 788888887654 58999999
Q ss_pred CCcceEEEECCCCcEEEc
Q 008845 418 SGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~ 435 (551)
+++||++++ ++|+.+.+
T Consensus 71 ~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 71 NSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred CccCEEEEE-cCCCCccc
Confidence 999999999 78876554
No 113
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.38 E-value=4.4e-12 Score=103.76 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=60.0
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+|+ ++|+|||+||++|+.+.|.++++++.+.. .+.++.|+++... .+++.|+|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQP------------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCH------------------------HHHHHcCC
Confidence 577 99999999999999999999999999864 4778888887654 48899999
Q ss_pred CCCcEEEEEcCCCeEEE
Q 008845 98 MGIPHLVILDENGKVLS 114 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~ 114 (551)
.++|++++++ +|+++.
T Consensus 65 ~~~Pt~~~~~-~g~~~~ 80 (96)
T cd02956 65 QALPTVYLFA-AGQPVD 80 (96)
T ss_pred CCCCEEEEEe-CCEEee
Confidence 9999999995 888765
No 114
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.37 E-value=3.6e-12 Score=112.17 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=87.5
Q ss_pred cCceeecccCCCc-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhC-CCCccccCCh
Q 008845 9 LLLRVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM-PWLAVPFSDS 85 (551)
Q Consensus 9 ~~~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~~~~~ 85 (551)
+|+.+++++++|| ++|+|| ++||++|...+|.|++++++++.. ++.+++|+.+ +.+..++|.+++ +..+..+.|.
T Consensus 11 ~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d-~~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 11 DGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVD-SPFSHKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred CCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-CHHHHHHHHhcccCCCceEEECC
Confidence 5789999999999 999999 789999999999999999999755 5899999987 567789999988 5555555554
Q ss_pred hhHHHHHhhcCCCCCc---------EEEEEcCCCeEEEc
Q 008845 86 ETRDKLDELFKVMGIP---------HLVILDENGKVLSD 115 (551)
Q Consensus 86 ~~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~ 115 (551)
. ..+.+.|++...| +++++|++|+|+..
T Consensus 89 ~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~ 125 (140)
T cd02971 89 D--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYV 125 (140)
T ss_pred C--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEE
Confidence 4 3688999988766 89999999999986
No 115
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.1e-12 Score=123.86 Aligned_cols=82 Identities=22% Similarity=0.445 Sum_probs=70.9
Q ss_pred CCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchh
Q 008845 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 407 (551)
Q Consensus 328 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~ 407 (551)
|.....+...+.++|||+||+|||++|+.++|.|+++...|+++ +.++.|++|..+
T Consensus 32 nfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p--------------------- 87 (304)
T COG3118 32 NFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEP--------------------- 87 (304)
T ss_pred HHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcch---------------------
Confidence 33344444445679999999999999999999999999999987 899999999876
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEEEcc
Q 008845 408 KASLSRKFKVSGIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 408 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 436 (551)
.++..|||+++|++|+| ++|+.+.-.
T Consensus 88 --~vAaqfgiqsIPtV~af-~dGqpVdgF 113 (304)
T COG3118 88 --MVAAQFGVQSIPTVYAF-KDGQPVDGF 113 (304)
T ss_pred --hHHHHhCcCcCCeEEEe-eCCcCcccc
Confidence 58999999999999999 899998863
No 116
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.6e-12 Score=118.22 Aligned_cols=123 Identities=20% Similarity=0.347 Sum_probs=89.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
.+|.|+|+|+|+||+||++..|.+..+.++|++ ..++-|++|.- +..+..+||
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c-----------------------~~taa~~gV 72 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDEC-----------------------RGTAATNGV 72 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHh-----------------------hchhhhcCc
Confidence 379999999999999999999999999999964 35555555433 357889999
Q ss_pred CCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhccCCccc------------c----------
Q 008845 418 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENV------------K---------- 475 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~~~~~~~------------~---------- 475 (551)
+++||++++ .+|+-+.+ .++++...|++++++.+...+... +
T Consensus 73 ~amPTFiff-~ng~kid~---------------~qGAd~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~glec 136 (288)
T KOG0908|consen 73 NAMPTFIFF-RNGVKIDQ---------------IQGADASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKVGLEC 136 (288)
T ss_pred ccCceEEEE-ecCeEeee---------------ecCCCHHHHHHHHHHHhccCcccccCCCcccceehhhhhhhhhccee
Confidence 999999999 78887776 445555778888887765333211 0
Q ss_pred -cCCcceeee--eec-CCceecCCCCCCCCce
Q 008845 476 -HALHEHELV--LDR-CGVYSCDGCDEEGRVW 503 (551)
Q Consensus 476 -~~~~~~~~~--l~~-~~~~~~~~c~~~g~~~ 503 (551)
....+|.+. |.. ...++..+|+||+...
T Consensus 137 lNqsddH~l~nalkk~~ss~lesD~DeQl~is 168 (288)
T KOG0908|consen 137 LNQSDDHFLKNALKKNFSSNLESDCDEQLIIS 168 (288)
T ss_pred eccccccchHHHHhhccccceecccccceEEE
Confidence 011166662 222 2268999999999763
No 117
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.36 E-value=8.3e-12 Score=114.32 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=83.8
Q ss_pred cCceeecccCCCc-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhC----CCCcccc
Q 008845 9 LLLRVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM----PWLAVPF 82 (551)
Q Consensus 9 ~~~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~----~~~~~~~ 82 (551)
....++|++++|| ++|+|| +.||+.|..+++.|+++++++.+.+ +.|++|+.| +....++|.+.. +..+..+
T Consensus 20 ~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g-~~vigIS~D-~~~~~~a~~~~~~~~~~l~fpll 97 (187)
T PRK10382 20 EFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG-VDVYSVSTD-THFTHKAWHSSSETIAKIKYAMI 97 (187)
T ss_pred cceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC-CEEEEEeCC-CHHHHHHHHHhhccccCCceeEE
Confidence 3457788999999 999999 9999999999999999999998774 899999988 456677776543 3334445
Q ss_pred CChhhHHHHHhhcCCC----CC--cEEEEEcCCCeEEEc
Q 008845 83 SDSETRDKLDELFKVM----GI--PHLVILDENGKVLSD 115 (551)
Q Consensus 83 ~~~~~~~~l~~~~~v~----~~--P~~~lid~~G~i~~~ 115 (551)
.|.+ ..+++.|++. ++ |+++|||++|+|+..
T Consensus 98 sD~~--~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 98 GDPT--GALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred EcCc--hHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 5544 5799999983 56 999999999999985
No 118
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.35 E-value=5.3e-12 Score=112.34 Aligned_cols=104 Identities=16% Similarity=0.291 Sum_probs=83.8
Q ss_pred ccCceeecccCC-Cc-EE-EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCC
Q 008845 8 ELLLRVKLDSLK-GK-IG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 84 (551)
Q Consensus 8 ~~~~~v~l~~~~-gk-vl-v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
.+|+.++++++. ++ ++ ++||++||++|+.++|.|+++++++.+. ++.++.|+.+.. +....|.++.++.+..+.|
T Consensus 10 ~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~-~~~~~~~~~~~~~~p~~~D 87 (149)
T cd02970 10 AGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESP-EKLEAFDKGKFLPFPVYAD 87 (149)
T ss_pred CCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCH-HHHHHHHHhcCCCCeEEEC
Confidence 357889999875 45 54 4456999999999999999999999876 499999998854 4456788888776666666
Q ss_pred hhhHHHHHhhcCCC-----------------------------CCcEEEEEcCCCeEEEc
Q 008845 85 SETRDKLDELFKVM-----------------------------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 85 ~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~i~~~ 115 (551)
.+ ..+.+.|++. ..|.++|+|++|+|+..
T Consensus 88 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~ 145 (149)
T cd02970 88 PD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFA 145 (149)
T ss_pred Cc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEE
Confidence 55 4688999984 78999999999999874
No 119
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.35 E-value=3.8e-12 Score=106.48 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHH-HhcC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS-RKFK 416 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~-~~~~ 416 (551)
.++++||+|||+||++|+.+.|.+.++++++++. +.++.|++|.+. .++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~-----------------------~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQ-----------------------GKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCh-----------------------HHHHHhcC
Confidence 3789999999999999999999999999999754 778888877654 467 5899
Q ss_pred CCCcceEEEECCCCcEEE
Q 008845 417 VSGIPMLVAIGPSGRTIT 434 (551)
Q Consensus 417 v~~~P~~~lid~~G~i~~ 434 (551)
|+++||++++ ++|+...
T Consensus 82 I~~~PTl~lf-~~g~~~~ 98 (113)
T cd03006 82 FFYFPVIHLY-YRSRGPI 98 (113)
T ss_pred CcccCEEEEE-ECCccce
Confidence 9999999999 6777543
No 120
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.34 E-value=5.6e-12 Score=105.44 Aligned_cols=68 Identities=10% Similarity=0.051 Sum_probs=57.8
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHH-hhcC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD-ELFK 96 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 96 (551)
.++ ++|.||||||+||+.++|.+.++++.+++ .+.++.|+++.+.+ ++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~------------------------l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQG------------------------KCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChH------------------------HHHHhcC
Confidence 456 99999999999999999999999999974 47888888886643 77 5899
Q ss_pred CCCCcEEEEEcCCCeEE
Q 008845 97 VMGIPHLVILDENGKVL 113 (551)
Q Consensus 97 v~~~P~~~lid~~G~i~ 113 (551)
|.++||+.++ ++|+..
T Consensus 82 I~~~PTl~lf-~~g~~~ 97 (113)
T cd03006 82 FFYFPVIHLY-YRSRGP 97 (113)
T ss_pred CcccCEEEEE-ECCccc
Confidence 9999999999 677643
No 121
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.2e-12 Score=119.87 Aligned_cols=69 Identities=29% Similarity=0.639 Sum_probs=62.7
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+-+ |||+||+|||++|+.++|.|.+++.+++ |.+.++.||+|.+.. +..+|||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~------------------------vAaqfgi 95 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPM------------------------VAAQFGV 95 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchh------------------------HHHHhCc
Confidence 445 9999999999999999999999999998 468999999997754 9999999
Q ss_pred CCCcEEEEEcCCCeEEE
Q 008845 98 MGIPHLVILDENGKVLS 114 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~ 114 (551)
+++|+++++ ++|+.+.
T Consensus 96 qsIPtV~af-~dGqpVd 111 (304)
T COG3118 96 QSIPTVYAF-KDGQPVD 111 (304)
T ss_pred CcCCeEEEe-eCCcCcc
Confidence 999999999 8999886
No 122
>PRK09381 trxA thioredoxin; Provisional
Probab=99.34 E-value=8.9e-12 Score=104.59 Aligned_cols=71 Identities=27% Similarity=0.578 Sum_probs=62.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.|+++++++.+. +.++.+++|..+ .+++.|+|+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh-----------------------hHHHhCCCC
Confidence 789999999999999999999999999998754 788888887664 478899999
Q ss_pred CcceEEEECCCCcEEEcc
Q 008845 419 GIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~ 436 (551)
++|+++++ ++|+++.+.
T Consensus 75 ~~Pt~~~~-~~G~~~~~~ 91 (109)
T PRK09381 75 GIPTLLLF-KNGEVAATK 91 (109)
T ss_pred cCCEEEEE-eCCeEEEEe
Confidence 99999999 699988763
No 123
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.34 E-value=3.1e-12 Score=124.27 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=69.4
Q ss_pred eeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHH
Q 008845 331 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 410 (551)
Q Consensus 331 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 410 (551)
...++++.|+++||+||++||++|+.++|.|+++++++. +.|+.|++|.... ..+|... .+..
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~~-~d~~ 220 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNAR-PDAG 220 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCccc-CCHH
Confidence 355677889999999999999999999999999988873 7899999987642 1244432 2345
Q ss_pred HHHhcCCCCcceEEEECCCCcEEE
Q 008845 411 LSRKFKVSGIPMLVAIGPSGRTIT 434 (551)
Q Consensus 411 l~~~~~v~~~P~~~lid~~G~i~~ 434 (551)
+++.|+|.++|+++|++++|+.+.
T Consensus 221 la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 221 QAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred HHHHcCCCcCCeEEEEECCCCEEE
Confidence 789999999999999999554443
No 124
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.34 E-value=6.6e-12 Score=104.39 Aligned_cols=77 Identities=19% Similarity=0.423 Sum_probs=61.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
.||+++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.|+++.+.. ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~-------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDP-------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCH-------------------HHHHHHHH
Confidence 389999999999999999999887 567777754 37888888765421 12468899
Q ss_pred cCCCCcceEEEECC-CCcEEEcc
Q 008845 415 FKVSGIPMLVAIGP-SGRTITKE 436 (551)
Q Consensus 415 ~~v~~~P~~~lid~-~G~i~~~~ 436 (551)
|+|+++|+++++++ +|+++.+.
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCccc
Confidence 99999999999998 89887763
No 125
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.33 E-value=5.4e-12 Score=104.31 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=59.4
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.++ ++|+|||+||++|+.+.|.+.+++++++. .+.++.|+++... .+++.|+|
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v 70 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDR------------------------MLCRSQGV 70 (101)
T ss_pred CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccH------------------------HHHHHcCC
Confidence 467 99999999999999999999999999974 4788888888653 48899999
Q ss_pred CCCcEEEEEcCCCeEE
Q 008845 98 MGIPHLVILDENGKVL 113 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~ 113 (551)
.++||++++ ++|+.+
T Consensus 71 ~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 71 NSYPSLYVF-PSGMNP 85 (101)
T ss_pred CccCEEEEE-cCCCCc
Confidence 999999999 788654
No 126
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.33 E-value=8.5e-12 Score=109.81 Aligned_cols=92 Identities=17% Similarity=0.317 Sum_probs=69.2
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+++ ++|+|||+||++|+.+.|.++++++++... ++.++.|+++...+ +++.|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~------------------------la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPN------------------------VAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHH------------------------HHHHcCc
Confidence 456 999999999999999999999999998754 48999999987754 7788888
Q ss_pred CC------CcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHH
Q 008845 98 MG------IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERI 136 (551)
Q Consensus 98 ~~------~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i 136 (551)
.+ +||++++ ++|+.+.+-.....+.-+....-++.+++
T Consensus 101 ~~~~~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~ 144 (152)
T cd02962 101 STSPLSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFSKENV 144 (152)
T ss_pred eecCCcCCCCEEEEE-ECCEEEEEEeccccCccccccccccHHHH
Confidence 77 9999999 68988876433222222233333454444
No 127
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.33 E-value=6e-12 Score=103.19 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=62.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
.+|+|||.|+|+||+||+.+.|.|.+++++++.. +.++.|++|..+ ++++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~-----------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP-----------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH-----------------------HHHHhcCc
Confidence 4899999999999999999999999999998643 677888887665 69999999
Q ss_pred CCcceEEEECCCCcEEEccc
Q 008845 418 SGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~~~ 437 (551)
++.||++++ ++|+-+..+.
T Consensus 67 ~amPtfvff-kngkh~~~d~ 85 (114)
T cd02986 67 SYIPSTIFF-FNGQHMKVDY 85 (114)
T ss_pred eeCcEEEEE-ECCcEEEEec
Confidence 999999999 7787666543
No 128
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.33 E-value=8.8e-12 Score=109.72 Aligned_cols=92 Identities=23% Similarity=0.417 Sum_probs=71.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.++++++++.+. ++.++.|++|..+ ++++.|+|+
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~~-----------------------~la~~~~V~ 101 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRFP-----------------------NVAEKFRVS 101 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCCH-----------------------HHHHHcCce
Confidence 679999999999999999999999999988643 4888999888775 477888887
Q ss_pred C------cceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHH
Q 008845 419 G------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERM 456 (551)
Q Consensus 419 ~------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~ 456 (551)
+ +||++++ ++|+.+.+..+.....-+...+-++.+++
T Consensus 102 ~~~~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~ 144 (152)
T cd02962 102 TSPLSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFSKENV 144 (152)
T ss_pred ecCCcCCCCEEEEE-ECCEEEEEEeccccCccccccccccHHHH
Confidence 7 9999999 69999988665333333333344544443
No 129
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.33 E-value=9.2e-12 Score=107.23 Aligned_cols=72 Identities=10% Similarity=0.191 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
.+++|||+|||+||+||+.+.|.|.++++++++. +.|+.|++|..+ +++..|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~-----------------------dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVP-----------------------DFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-----------------------HHHHHcCc
Confidence 3789999999999999999999999999998764 788889998775 69999999
Q ss_pred CCcceEE-EECCCCc-EEEcc
Q 008845 418 SGIPMLV-AIGPSGR-TITKE 436 (551)
Q Consensus 418 ~~~P~~~-lid~~G~-i~~~~ 436 (551)
++.|+++ ++ ++|+ .+.+.
T Consensus 76 ~~~~t~~~ff-k~g~~~vd~~ 95 (142)
T PLN00410 76 YDPCTVMFFF-RNKHIMIDLG 95 (142)
T ss_pred cCCCcEEEEE-ECCeEEEEEe
Confidence 9887776 77 7887 55553
No 130
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.7e-12 Score=104.74 Aligned_cols=72 Identities=25% Similarity=0.573 Sum_probs=62.0
Q ss_pred ccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhh
Q 008845 16 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 94 (551)
Q Consensus 16 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (551)
....+| ++|+|||+|||||+.+.|.+.+++.+|. ++.++.|++|+. ..+++.
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~------------------------~~~~~~ 69 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDEL------------------------EEVAKE 69 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccC------------------------HhHHHh
Confidence 333467 9999999999999999999999999998 467888888872 358999
Q ss_pred cCCCCCcEEEEEcCCCeEEEc
Q 008845 95 FKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 95 ~~v~~~P~~~lid~~G~i~~~ 115 (551)
++|.++||++++ ++|+.+.+
T Consensus 70 ~~V~~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 70 FNVKAMPTFVFY-KGGEEVDE 89 (106)
T ss_pred cCceEeeEEEEE-ECCEEEEE
Confidence 999999999999 88887764
No 131
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.31 E-value=5.4e-12 Score=106.76 Aligned_cols=73 Identities=25% Similarity=0.588 Sum_probs=57.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
++|+|+|+|||+||++|+.+.|.+.+........ ..++.|++|.+.+ ...+.|++
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~----------------------~~~~~~~~ 72 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE----------------------PKDEEFSP 72 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC----------------------chhhhccc
Confidence 4899999999999999999999998876654322 4566677765431 23457778
Q ss_pred CC--cceEEEECCCCcEEEc
Q 008845 418 SG--IPMLVAIGPSGRTITK 435 (551)
Q Consensus 418 ~~--~P~~~lid~~G~i~~~ 435 (551)
.+ +|+++++|++|+++.+
T Consensus 73 ~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 73 DGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred CCCccceEEEECCCCCCchh
Confidence 76 9999999999999876
No 132
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.31 E-value=9.9e-12 Score=103.34 Aligned_cols=71 Identities=24% Similarity=0.481 Sum_probs=60.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+|||+||++|+.+.|.++++++++++. +.++.|+.+..+ .+++.|+|+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYE-----------------------SLCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchH-----------------------HHHHHcCCC
Confidence 679999999999999999999999999998643 778888777553 589999999
Q ss_pred CcceEEEECCCCcEEEc
Q 008845 419 GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~ 435 (551)
++||++++..+|+.+.+
T Consensus 73 ~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 73 AYPTIRLYPGNASKYHS 89 (104)
T ss_pred cccEEEEEcCCCCCceE
Confidence 99999999766566655
No 133
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.9e-11 Score=108.51 Aligned_cols=139 Identities=20% Similarity=0.340 Sum_probs=110.8
Q ss_pred hccCCcccee-cC-CCC---eeecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hH
Q 008845 316 LVSGDLDFVV-GK-NGG---KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QT 387 (551)
Q Consensus 316 ~~~~~~~f~~-~~-~g~---~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~--~~ 387 (551)
.....|+|.. .. .|. +++++++.||+++|.|| +...+.|..++..+.+.+.+|++. +++|+++|+|.. ..
T Consensus 5 Ig~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~--g~eVigvS~Ds~fsH~ 82 (194)
T COG0450 5 IGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR--GVEVIGVSTDSVFSHK 82 (194)
T ss_pred cCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc--CCEEEEEecCcHHHHH
Confidence 3445689987 33 453 99999999999999999 677788999999999999999987 799999999964 35
Q ss_pred HHHHHHhcCCC---cccccCchhhHHHHHhcCCC------CcceEEEECCCCcEEEcccchhhhhcCCCCCCCC-HHHHH
Q 008845 388 SFDEFFKGMPW---LALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT-EERMK 457 (551)
Q Consensus 388 ~~~~~~~~~~~---~~~~~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~-~~~~~ 457 (551)
+|.+...+.+. +.+|+..|.++++++.||+- ....+|||||+|+|++... +|.+ +++++
T Consensus 83 aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v-----------~~~~iGRn~d 151 (194)
T COG0450 83 AWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILV-----------NPLTIGRNVD 151 (194)
T ss_pred HHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEE-----------ecCCCCcCHH
Confidence 66666555543 78999999999999999985 3568999999999998732 2233 67777
Q ss_pred HHHHHHHHHh
Q 008845 458 EIDGQYNEMA 467 (551)
Q Consensus 458 ~l~~~l~~~~ 467 (551)
++...++.+.
T Consensus 152 EilR~idAlq 161 (194)
T COG0450 152 EILRVIDALQ 161 (194)
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 134
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.30 E-value=1.3e-11 Score=110.16 Aligned_cols=115 Identities=15% Similarity=0.276 Sum_probs=96.2
Q ss_pred CCcccee-cCC---CCeeeccc-CCCCEEEEEEe-cCCChhHHhh-hHHHHHHHHHHhhcCCCe-EEEEEeCCCChHHHH
Q 008845 319 GDLDFVV-GKN---GGKVPVSD-LAGKTILLYFS-AHWCPPCRAF-LPKLIDAYKKIKERNESL-EVVFISSDRDQTSFD 390 (551)
Q Consensus 319 ~~~~f~~-~~~---g~~v~l~~-~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-~vv~vs~d~~~~~~~ 390 (551)
..|+|.+ +.+ |+.++|++ ++||+++|+|| +.|||.|..+ ++.|.+.++++.+. ++ .|+.||.|.. ...+
T Consensus 4 ~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~D~~-~~~~ 80 (155)
T cd03013 4 KLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSVNDP-FVMK 80 (155)
T ss_pred cCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEECCCH-HHHH
Confidence 4588988 664 99999999 58887777776 8899999999 99999999999876 57 6999999854 6788
Q ss_pred HHHhcCCC-cccccCchhhHHHHHhcCCC------C-----cceEEEECCCCcEEEccc
Q 008845 391 EFFKGMPW-LALPFGDARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 391 ~~~~~~~~-~~~~~~~d~~~~l~~~~~v~------~-----~P~~~lid~~G~i~~~~~ 437 (551)
+|.++++. ..+|++.|.+..+++.||+. + .+.++||| +|+|++...
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 89888886 48999999999999999983 1 46789999 699998743
No 135
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.30 E-value=1.6e-11 Score=101.45 Aligned_cols=69 Identities=23% Similarity=0.395 Sum_probs=57.9
Q ss_pred CCcEEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 19 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 19 ~gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
+|+++|+|||+||++|+.+.|.|.++++.++.. ++.+..|+++.+. .++++|+|.
T Consensus 16 ~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~------------------------~~~~~~~i~ 70 (101)
T cd02994 16 EGEWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEP------------------------GLSGRFFVT 70 (101)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCH------------------------hHHHHcCCc
Confidence 455889999999999999999999999887643 4778888877553 488999999
Q ss_pred CCcEEEEEcCCCeEE
Q 008845 99 GIPHLVILDENGKVL 113 (551)
Q Consensus 99 ~~P~~~lid~~G~i~ 113 (551)
++|+++++ ++|++.
T Consensus 71 ~~Pt~~~~-~~g~~~ 84 (101)
T cd02994 71 ALPTIYHA-KDGVFR 84 (101)
T ss_pred ccCEEEEe-CCCCEE
Confidence 99999998 888753
No 136
>PTZ00062 glutaredoxin; Provisional
Probab=99.29 E-value=3.4e-11 Score=110.95 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=50.7
Q ss_pred CcEEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCC
Q 008845 20 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 99 (551)
Q Consensus 20 gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 99 (551)
|+++++|||+||++|+.+.|.+.++++++. ++.++.|+.+ |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------------------------------cCccc
Confidence 449999999999999999999999999986 3555555322 89999
Q ss_pred CcEEEEEcCCCeEEEc
Q 008845 100 IPHLVILDENGKVLSD 115 (551)
Q Consensus 100 ~P~~~lid~~G~i~~~ 115 (551)
+|+++++ ++|+.+.+
T Consensus 63 vPtfv~~-~~g~~i~r 77 (204)
T PTZ00062 63 YGVFEFY-QNSQLINS 77 (204)
T ss_pred ceEEEEE-ECCEEEee
Confidence 9999999 79988875
No 137
>PRK10996 thioredoxin 2; Provisional
Probab=99.29 E-value=2.7e-11 Score=106.08 Aligned_cols=70 Identities=24% Similarity=0.622 Sum_probs=61.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.|.++++++.+. +.++.|+++..+ .+++.|+|+
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~V~ 105 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAER-----------------------ELSARFRIR 105 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCH-----------------------HHHHhcCCC
Confidence 789999999999999999999999999887653 777777776554 589999999
Q ss_pred CcceEEEECCCCcEEEc
Q 008845 419 GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~ 435 (551)
++|+++++ ++|+++.+
T Consensus 106 ~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 106 SIPTIMIF-KNGQVVDM 121 (139)
T ss_pred ccCEEEEE-ECCEEEEE
Confidence 99999999 58998877
No 138
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.29 E-value=3.9e-11 Score=99.69 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=56.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+++.|.|+++++.++....++.+..++++..+ .+++.|+|+
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~I~ 71 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-----------------------SIASEFGVR 71 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-----------------------hHHhhcCCc
Confidence 679999999999999999999999999998754334666666665432 578999999
Q ss_pred CcceEEEECCCCcE
Q 008845 419 GIPMLVAIGPSGRT 432 (551)
Q Consensus 419 ~~P~~~lid~~G~i 432 (551)
++|++++++ +|..
T Consensus 72 ~~Pt~~l~~-~~~~ 84 (104)
T cd03000 72 GYPTIKLLK-GDLA 84 (104)
T ss_pred cccEEEEEc-CCCc
Confidence 999999994 4543
No 139
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.28 E-value=9.8e-12 Score=104.67 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=59.8
Q ss_pred CCEEEEEEecCCChh--HH--hhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 339 GKTILLYFSAHWCPP--CR--AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 339 gk~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
..++|++||++||+| |+ .+.|.+.+++.++-.. .++.++.|++|..+ ++++.
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~~~-----------------------~La~~ 82 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKKDA-----------------------KVAKK 82 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCCCH-----------------------HHHHH
Confidence 569999999999988 99 8888899988887221 14888888888775 69999
Q ss_pred cCCCCcceEEEECCCCcEEE
Q 008845 415 FKVSGIPMLVAIGPSGRTIT 434 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~~ 434 (551)
|+|+++||++++ ++|+++.
T Consensus 83 ~~I~~iPTl~lf-k~G~~v~ 101 (120)
T cd03065 83 LGLDEEDSIYVF-KDDEVIE 101 (120)
T ss_pred cCCccccEEEEE-ECCEEEE
Confidence 999999999999 7899775
No 140
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.28 E-value=3.4e-11 Score=109.60 Aligned_cols=118 Identities=26% Similarity=0.468 Sum_probs=95.4
Q ss_pred cCCcccee-cCCCCeeecccCCCCEEEEEEecCCCh-hHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---ChHHHHHH
Q 008845 318 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDEF 392 (551)
Q Consensus 318 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~---~~~~~~~~ 392 (551)
...++|.+ +.+|+.+++++++||++||+|..+.|| .|...+..|.++.+++..+..++++++||+|. +++.+++|
T Consensus 30 ~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 30 RIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp CSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred ccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 34578988 999999999999999999999999998 59999999999999998765689999999994 46788999
Q ss_pred HhcC--CCcccccCchhhHHHHHhcCCC----------------CcceEEEECCCCcEEEc
Q 008845 393 FKGM--PWLALPFGDARKASLSRKFKVS----------------GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 393 ~~~~--~~~~~~~~~d~~~~l~~~~~v~----------------~~P~~~lid~~G~i~~~ 435 (551)
.+.+ .|..+....+....+++.|++. ....++||||+|+++..
T Consensus 110 ~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 110 AKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 9876 3566666556667788888864 23468999999999876
No 141
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.27 E-value=1.7e-11 Score=103.39 Aligned_cols=95 Identities=19% Similarity=0.447 Sum_probs=65.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
.||+++|+||++|||+|+.+.+.+.+..+-...-..++.++.++++........+....+. +.......++.+.|+|
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcCC
Confidence 4899999999999999999999988644321111124888898888665544444443321 2222334579999999
Q ss_pred CCcceEEEECCCCcEEEc
Q 008845 418 SGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~ 435 (551)
+++|+++++|++|+++.+
T Consensus 81 ~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp -SSSEEEECTTTSCEEEE
T ss_pred CccCEEEEEcCCCCEEEE
Confidence 999999999999999876
No 142
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.27 E-value=1.8e-11 Score=102.43 Aligned_cols=70 Identities=21% Similarity=0.468 Sum_probs=58.4
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCC----CCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ----GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~----~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
.++ ++|+||||||++|+.+.|.+.++++.+++. +.+.++.|+++... .+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~------------------------~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES------------------------DIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH------------------------HHHH
Confidence 356 999999999999999999999999887532 24777788887654 4899
Q ss_pred hcCCCCCcEEEEEcCCCeEE
Q 008845 94 LFKVMGIPHLVILDENGKVL 113 (551)
Q Consensus 94 ~~~v~~~P~~~lid~~G~i~ 113 (551)
+|+|.++|+++++ ++|++.
T Consensus 73 ~~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 73 RYRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred hCCCCcCCEEEEE-eCCcCc
Confidence 9999999999999 788743
No 143
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.27 E-value=3e-11 Score=99.81 Aligned_cols=68 Identities=22% Similarity=0.503 Sum_probs=56.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
+|+ ++|+|||+||++|+.+.|.|.++++.++.. ++.+..|+++..+ .+++.|+|
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~~-----------------------~~~~~~~i 69 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQEP-----------------------GLSGRFFV 69 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccCCH-----------------------hHHHHcCC
Confidence 355 689999999999999999999998876532 4777777766543 58899999
Q ss_pred CCcceEEEECCCCcE
Q 008845 418 SGIPMLVAIGPSGRT 432 (551)
Q Consensus 418 ~~~P~~~lid~~G~i 432 (551)
+++||++++ ++|++
T Consensus 70 ~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 70 TALPTIYHA-KDGVF 83 (101)
T ss_pred cccCEEEEe-CCCCE
Confidence 999999998 78875
No 144
>PRK09381 trxA thioredoxin; Provisional
Probab=99.27 E-value=3.9e-11 Score=100.64 Aligned_cols=69 Identities=32% Similarity=0.649 Sum_probs=60.3
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|+||++||++|+.+.|.|+++++++.. ++.++.++++.... +.+.|++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~------------------------~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPG------------------------TAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChh------------------------HHHhCCCC
Confidence 56 99999999999999999999999999974 47888888886543 77889999
Q ss_pred CCcEEEEEcCCCeEEEc
Q 008845 99 GIPHLVILDENGKVLSD 115 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~~ 115 (551)
++|+++++ ++|+++..
T Consensus 75 ~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 75 GIPTLLLF-KNGEVAAT 90 (109)
T ss_pred cCCEEEEE-eCCeEEEE
Confidence 99999999 78988764
No 145
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.27 E-value=1.6e-10 Score=107.70 Aligned_cols=73 Identities=23% Similarity=0.435 Sum_probs=58.4
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCc
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 101 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 101 (551)
++|.||||||+||+++.|.|.++-..+++.| ++|-.-..|.+.- ..+++.|+|+++|
T Consensus 46 W~VdFYAPWC~HCKkLePiWdeVG~elkdig-~PikVGKlDaT~f----------------------~aiAnefgiqGYP 102 (468)
T KOG4277|consen 46 WFVDFYAPWCAHCKKLEPIWDEVGHELKDIG-LPIKVGKLDATRF----------------------PAIANEFGIQGYP 102 (468)
T ss_pred EEEEeechhhhhcccccchhHHhCcchhhcC-Cceeecccccccc----------------------hhhHhhhccCCCc
Confidence 9999999999999999999999999998876 4444334554432 4589999999999
Q ss_pred EEEEEcCCCeEEEcCcc
Q 008845 102 HLVILDENGKVLSDGGV 118 (551)
Q Consensus 102 ~~~lid~~G~i~~~~~~ 118 (551)
|+.++ ++|..+...|.
T Consensus 103 TIk~~-kgd~a~dYRG~ 118 (468)
T KOG4277|consen 103 TIKFF-KGDHAIDYRGG 118 (468)
T ss_pred eEEEe-cCCeeeecCCC
Confidence 99999 77777665443
No 146
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.1e-10 Score=101.80 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=93.5
Q ss_pred cccCceeecccCCCc-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCC
Q 008845 7 YELLLRVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 84 (551)
Q Consensus 7 ~~~~~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
-++|+.++|++++|| |||+|| ..++|.|-.++-.+++.+.++... +..|++||.| +....++|.+++++.+..++|
T Consensus 17 ~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~D-s~~~~~~F~~k~~L~f~LLSD 94 (157)
T COG1225 17 DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPD-SPKSHKKFAEKHGLTFPLLSD 94 (157)
T ss_pred cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCC-CHHHHHHHHHHhCCCceeeEC
Confidence 367889999999999 999999 789999999999999999999987 4899999999 778899999999999888888
Q ss_pred hhhHHHHHhhcCCC------------CCcEEEEEcCCCeEEEc
Q 008845 85 SETRDKLDELFKVM------------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 85 ~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~ 115 (551)
.+. .++++||+. ..+++||||++|+|+..
T Consensus 95 ~~~--~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 95 EDG--EVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred CcH--HHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 774 599999984 34889999999999985
No 147
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.26 E-value=2.9e-11 Score=99.16 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=59.8
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.+| |+|.|+|+|||+|+.+.|.|.+++++++. .+.++.|++|+..+ +++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~d------------------------va~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPV------------------------YTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHH------------------------HHHhcCc
Confidence 578 99999999999999999999999999973 27788888886644 9999999
Q ss_pred CCCcEEEEEcCCCeEEE
Q 008845 98 MGIPHLVILDENGKVLS 114 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~ 114 (551)
.+.|+++++ ++|+-+.
T Consensus 67 ~amPtfvff-kngkh~~ 82 (114)
T cd02986 67 SYIPSTIFF-FNGQHMK 82 (114)
T ss_pred eeCcEEEEE-ECCcEEE
Confidence 999999999 6776655
No 148
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.25 E-value=4.9e-11 Score=108.56 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=60.7
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHHh-hCCCC
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYFS-KMPWL 78 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~-~~~~~ 78 (551)
.+|+.+++++++|| +||.|||+||++|+ .+|.|+++++++++.| +.|++++++ .+.+++.+|++ +++..
T Consensus 13 ~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g-l~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~ 90 (183)
T PRK10606 13 IDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG-FVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT 90 (183)
T ss_pred CCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC-eEEEEeeccccccCCCCCHHHHHHHHHHccCCC
Confidence 47889999999999 99999999999996 6999999999998875 999999985 36688999987 56654
Q ss_pred cc
Q 008845 79 AV 80 (551)
Q Consensus 79 ~~ 80 (551)
+.
T Consensus 91 Fp 92 (183)
T PRK10606 91 FP 92 (183)
T ss_pred ce
Confidence 33
No 149
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.25 E-value=1.6e-11 Score=103.37 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.++ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++...+ +++.|+|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~------------------------l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPF------------------------LVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHH------------------------HHHHCCC
Confidence 356 9999999999999999999999999886 47888888887644 8899999
Q ss_pred CCCcEEEEEcCCCeEEEc
Q 008845 98 MGIPHLVILDENGKVLSD 115 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (551)
.++|+++++ ++|+.+.+
T Consensus 74 ~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 74 KVLPTVILF-KNGKTVDR 90 (113)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 78988864
No 150
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.25 E-value=3.1e-11 Score=98.93 Aligned_cols=71 Identities=23% Similarity=0.450 Sum_probs=58.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.|.++.+++.. .+.++.++.+.. .++++.|+++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-----------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-----------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-----------------------HHHHHhcCCc
Confidence 68999999999999999999999999888732 366666655433 2688999999
Q ss_pred CcceEEEECCCCcEEEcc
Q 008845 419 GIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~ 436 (551)
++|+++++ ++|+++.+.
T Consensus 68 ~~Pt~~~~-~~g~~~~~~ 84 (97)
T cd02984 68 AVPTFVFF-RNGTIVDRV 84 (97)
T ss_pred cccEEEEE-ECCEEEEEE
Confidence 99999999 589988773
No 151
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.25 E-value=4.2e-11 Score=103.14 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=62.5
Q ss_pred CCC-c-EEEEEecCCCHhhHhhhHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHH
Q 008845 18 LKG-K-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 92 (551)
Q Consensus 18 ~~g-k-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (551)
-.| | ++|+|||+||++|+.++|.+. ++.+.+.+ ++.++.|+++.+.... .| .. . ......+.
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~-~~-~~--------~-~~~~~~l~ 77 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVT-DF-DG--------E-ALSEKELA 77 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceee-cc-CC--------C-CccHHHHH
Confidence 357 8 999999999999999999885 56666653 4788888888654211 11 00 0 01124688
Q ss_pred hhcCCCCCcEEEEEcCC-CeEEEc
Q 008845 93 ELFKVMGIPHLVILDEN-GKVLSD 115 (551)
Q Consensus 93 ~~~~v~~~P~~~lid~~-G~i~~~ 115 (551)
.+|++.++|++++++++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999998 788764
No 152
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.25 E-value=3.8e-11 Score=100.51 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=58.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcC---CCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 415 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 415 (551)
+++++|+|||+||++|+++.|.+.++++.+++.. ..+.++.|++|... .+++.|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-----------------------~l~~~~ 74 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-----------------------DIADRY 74 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-----------------------HHHHhC
Confidence 6899999999999999999999999999886532 13666667666553 689999
Q ss_pred CCCCcceEEEECCCCcEE
Q 008845 416 KVSGIPMLVAIGPSGRTI 433 (551)
Q Consensus 416 ~v~~~P~~~lid~~G~i~ 433 (551)
+|+++|+++++ ++|++.
T Consensus 75 ~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 75 RINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCcCCEEEEE-eCCcCc
Confidence 99999999999 788843
No 153
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.24 E-value=2.4e-11 Score=99.83 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=64.3
Q ss_pred CCEEEEEEecCC--ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008845 339 GKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 416 (551)
Q Consensus 339 gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 416 (551)
|.+++|.||++| ||+|+.+.|.|.++++++.+. +.++.|++|..+ .++..|+
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~-----------------------~la~~f~ 80 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ-----------------------ALAARFG 80 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH-----------------------HHHHHcC
Confidence 778999999997 999999999999999999765 778888888765 6999999
Q ss_pred CCCcceEEEECCCCcEEEccc
Q 008845 417 VSGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 417 v~~~P~~~lid~~G~i~~~~~ 437 (551)
|+++||++++ ++|+++.+..
T Consensus 81 V~sIPTli~f-kdGk~v~~~~ 100 (111)
T cd02965 81 VLRTPALLFF-RDGRYVGVLA 100 (111)
T ss_pred CCcCCEEEEE-ECCEEEEEEe
Confidence 9999999999 7999998743
No 154
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.24 E-value=4.3e-11 Score=99.44 Aligned_cols=68 Identities=28% Similarity=0.507 Sum_probs=55.6
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 96 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (551)
+++ ++|+|||+||++|+.++|.|.+++++++..+ .+.+..++++... .+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS------------------------SIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH------------------------hHHhhcC
Confidence 456 9999999999999999999999999997543 4667777766432 4888999
Q ss_pred CCCCcEEEEEcCCCe
Q 008845 97 VMGIPHLVILDENGK 111 (551)
Q Consensus 97 v~~~P~~~lid~~G~ 111 (551)
|.++|+++++ .+|.
T Consensus 70 I~~~Pt~~l~-~~~~ 83 (104)
T cd03000 70 VRGYPTIKLL-KGDL 83 (104)
T ss_pred CccccEEEEE-cCCC
Confidence 9999999999 4553
No 155
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.24 E-value=4.8e-11 Score=99.16 Aligned_cols=70 Identities=23% Similarity=0.396 Sum_probs=58.2
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.++ ++|+|||+||++|+.+.|.+.++++++.. .+.++.|+++... .+++.|+|
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~i 71 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYE------------------------SLCQQANI 71 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchH------------------------HHHHHcCC
Confidence 366 99999999999999999999999999853 4788888887543 48899999
Q ss_pred CCCcEEEEEcCCCeEEE
Q 008845 98 MGIPHLVILDENGKVLS 114 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~ 114 (551)
.++|+++++..+|+.+.
T Consensus 72 ~~~Pt~~~~~~g~~~~~ 88 (104)
T cd03004 72 RAYPTIRLYPGNASKYH 88 (104)
T ss_pred CcccEEEEEcCCCCCce
Confidence 99999999965435443
No 156
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.23 E-value=9.5e-11 Score=97.02 Aligned_cols=68 Identities=32% Similarity=0.718 Sum_probs=60.1
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++... .+++.|+|.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENK------------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSH------------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccc------------------------hhhhccCCC
Confidence 57 99999999999999999999999999986 5888888888664 499999999
Q ss_pred CCcEEEEEcCCCeEEE
Q 008845 99 GIPHLVILDENGKVLS 114 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~ 114 (551)
++|+++++ ++|+...
T Consensus 71 ~~Pt~~~~-~~g~~~~ 85 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVK 85 (103)
T ss_dssp SSSEEEEE-ETTEEEE
T ss_pred CCCEEEEE-ECCcEEE
Confidence 99999999 6777765
No 157
>PRK10996 thioredoxin 2; Provisional
Probab=99.23 E-value=1e-10 Score=102.43 Aligned_cols=70 Identities=31% Similarity=0.701 Sum_probs=60.0
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++... .++++|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAER------------------------ELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCH------------------------HHHHhcCC
Confidence 477 99999999999999999999999998864 4777888776553 48899999
Q ss_pred CCCcEEEEEcCCCeEEEc
Q 008845 98 MGIPHLVILDENGKVLSD 115 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (551)
.++|+++++ ++|+++..
T Consensus 105 ~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 105 RSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999998 58998764
No 158
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.23 E-value=3.4e-11 Score=99.65 Aligned_cols=71 Identities=25% Similarity=0.557 Sum_probs=58.7
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008845 341 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 420 (551)
Q Consensus 341 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 420 (551)
+++|+||++||++|+.+.|.+.++++++++....+.++.|+.+... .+++.|+|.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----------------------ELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----------------------hhHhhcCCCcC
Confidence 5999999999999999999999999999763234777777665443 58899999999
Q ss_pred ceEEEECCCCcEEEc
Q 008845 421 PMLVAIGPSGRTITK 435 (551)
Q Consensus 421 P~~~lid~~G~i~~~ 435 (551)
|+++++ ++|+.+.+
T Consensus 75 Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 75 PTLLLF-KDGEKVDK 88 (102)
T ss_pred CEEEEE-eCCCeeeE
Confidence 999999 67876654
No 159
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.23 E-value=5.2e-11 Score=100.18 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=62.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++|+|+||++||++|+.+.|.|.++.+++. ++.++.|+++..+ .+++.|+|+
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~~-----------------------~l~~~~~v~ 74 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKAP-----------------------FLVEKLNIK 74 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccCH-----------------------HHHHHCCCc
Confidence 5799999999999999999999999998874 3688888887664 589999999
Q ss_pred CcceEEEECCCCcEEEccc
Q 008845 419 GIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~ 437 (551)
++||++++ ++|+.+.+..
T Consensus 75 ~vPt~l~f-k~G~~v~~~~ 92 (113)
T cd02989 75 VLPTVILF-KNGKTVDRIV 92 (113)
T ss_pred cCCEEEEE-ECCEEEEEEE
Confidence 99999999 7899887743
No 160
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.23 E-value=5.6e-11 Score=98.41 Aligned_cols=70 Identities=30% Similarity=0.770 Sum_probs=61.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.|.++.+.+.+ ++.++.|+.+..+ .+++.|+|.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~-----------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENK-----------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSH-----------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccc-----------------------hhhhccCCC
Confidence 68999999999999999999999999999876 4888888887654 689999999
Q ss_pred CcceEEEECCCCcEEEc
Q 008845 419 GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~ 435 (551)
++|+++++ .+|+...+
T Consensus 71 ~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred CCCEEEEE-ECCcEEEE
Confidence 99999999 67777665
No 161
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.23 E-value=3.9e-11 Score=100.66 Aligned_cols=68 Identities=29% Similarity=0.488 Sum_probs=58.2
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.|+ ++|+|||+||++|+.+.|.+.++++.+.. .+.++.|+++.+.. ..+++.|+|
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~----------------------~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKN----------------------KPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCcccc----------------------HHHHHHcCC
Confidence 477 99999999999999999999999999874 47888888886322 358899999
Q ss_pred CCCcEEEEEcCCC
Q 008845 98 MGIPHLVILDENG 110 (551)
Q Consensus 98 ~~~P~~~lid~~G 110 (551)
.++|+++++++++
T Consensus 73 ~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 QGFPTLKVFRPPK 85 (109)
T ss_pred CcCCEEEEEeCCC
Confidence 9999999997665
No 162
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.23 E-value=4.8e-11 Score=100.69 Aligned_cols=67 Identities=15% Similarity=0.356 Sum_probs=58.0
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|+||+|||++|+.+.|.|.++++++. ++.++.|+++.. + +++.|+|.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~------------------------l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-F------------------------LVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-H------------------------HHHhcCCC
Confidence 47 9999999999999999999999999986 366777777643 3 88999999
Q ss_pred CCcEEEEEcCCCeEEEc
Q 008845 99 GIPHLVILDENGKVLSD 115 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~~ 115 (551)
++|+++++ ++|+.+.+
T Consensus 76 ~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 76 VLPTLLVY-KNGELIDN 91 (113)
T ss_pred cCCEEEEE-ECCEEEEE
Confidence 99999999 78988875
No 163
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.23 E-value=1.4e-10 Score=98.49 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=67.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
.+|+|+|+|+++||++|+.+.+.. .++.+.+.. ++.+|.|+++..++..+.+.+ .....
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~---------------~~~~~ 75 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMN---------------AAQAM 75 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHH---------------HHHHh
Confidence 489999999999999999998732 234444433 366777766654321111111 22336
Q ss_pred cCCCCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHH
Q 008845 415 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 466 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~ 466 (551)
|++.|+|+++++|++|++++..+.-... + .+.+.....+.+.++++
T Consensus 76 ~~~~G~Pt~vfl~~~G~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 76 TGQGGWPLNVFLTPDLKPFFGGTYFPPE----D--RYGRPGFKTVLEKIREL 121 (124)
T ss_pred cCCCCCCEEEEECCCCCEEeeeeecCCC----C--cCCCcCHHHHHHHHHHH
Confidence 7999999999999999999885432111 1 13345556666666554
No 164
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.23 E-value=4.1e-11 Score=99.61 Aligned_cols=75 Identities=23% Similarity=0.392 Sum_probs=60.0
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhh
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 94 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (551)
.|+ ++|+||++||++|+.+.|.+ .++++.+.+ ++.++.|+++.+.. ....++++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~--------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDP--------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCH--------------------HHHHHHHH
Confidence 578 99999999999999999988 577777764 48888888765422 01468899
Q ss_pred cCCCCCcEEEEEcC-CCeEEEc
Q 008845 95 FKVMGIPHLVILDE-NGKVLSD 115 (551)
Q Consensus 95 ~~v~~~P~~~lid~-~G~i~~~ 115 (551)
|++.++|+++++++ +|+++.+
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCcc
Confidence 99999999999987 7876653
No 165
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.22 E-value=3.9e-11 Score=100.65 Aligned_cols=69 Identities=29% Similarity=0.585 Sum_probs=59.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.+.++++.+... +.++.|++|.+. ...+++.|+|+
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~---------------------~~~~~~~~~i~ 73 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK---------------------NKPLCGKYGVQ 73 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc---------------------cHHHHHHcCCC
Confidence 789999999999999999999999999988754 788888887632 13689999999
Q ss_pred CcceEEEECCCCc
Q 008845 419 GIPMLVAIGPSGR 431 (551)
Q Consensus 419 ~~P~~~lid~~G~ 431 (551)
++|+++++++++.
T Consensus 74 ~~Pt~~~~~~~~~ 86 (109)
T cd03002 74 GFPTLKVFRPPKK 86 (109)
T ss_pred cCCEEEEEeCCCc
Confidence 9999999987763
No 166
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.22 E-value=4.9e-11 Score=99.97 Aligned_cols=73 Identities=18% Similarity=0.436 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH-hcC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 416 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~ 416 (551)
+||+++|.||++||++|+++.|.+.++++.+++. ++.++.|++|.+. ..+++ .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccc----------------------hhhHHhhcC
Confidence 3799999999999999999999999999998743 4888888887632 13555 599
Q ss_pred CCCcceEEEECCCCcEEE
Q 008845 417 VSGIPMLVAIGPSGRTIT 434 (551)
Q Consensus 417 v~~~P~~~lid~~G~i~~ 434 (551)
|+++||+++++++++...
T Consensus 76 v~~~Pti~~f~~~~~~~~ 93 (109)
T cd02993 76 LKSFPTILFFPKNSRQPI 93 (109)
T ss_pred CCcCCEEEEEcCCCCCce
Confidence 999999999988776443
No 167
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.22 E-value=7.8e-11 Score=109.93 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=79.0
Q ss_pred ceeecccCCCc-EEE-EEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHH--HH-HHHHhhCCC--CccccC
Q 008845 11 LRVKLDSLKGK-IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AF-KGYFSKMPW--LAVPFS 83 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv-~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~--~~-~~~~~~~~~--~~~~~~ 83 (551)
..+++++++|| ++| .||++||+.|..+++.|+++++++++.+ +.|++|++|.... .| +++.++.+. .+..+.
T Consensus 18 g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~-~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~ 96 (202)
T PRK13190 18 GPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG-VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIA 96 (202)
T ss_pred CcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEE
Confidence 37999999999 665 6899999999999999999999998774 8999999985422 22 233344442 344455
Q ss_pred ChhhHHHHHhhcCCC------CCcEEEEEcCCCeEEEc
Q 008845 84 DSETRDKLDELFKVM------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 84 ~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 115 (551)
|.+ ..+++.|++. .+|+++|||++|+|+..
T Consensus 97 D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 97 DID--KELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred CCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 554 4689999985 58999999999999874
No 168
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.21 E-value=1.1e-10 Score=109.61 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=82.1
Q ss_pred cCceeecccCCCc-E-EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCC--HHHHHHHHhhC---CCCccc
Q 008845 9 LLLRVKLDSLKGK-I-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEAFKGYFSKM---PWLAVP 81 (551)
Q Consensus 9 ~~~~v~l~~~~gk-v-lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~--~~~~~~~~~~~---~~~~~~ 81 (551)
.|+.+.+++++|| + |+.||++|||+|..+++.|+++++++.+.+ +.|++||+|.. ...|.+++++. +..+..
T Consensus 17 ~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g-v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPi 95 (215)
T PRK13599 17 QGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN-TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPV 95 (215)
T ss_pred CCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeE
Confidence 5666667899999 4 678899999999999999999999998774 89999999963 33456666653 344444
Q ss_pred cCChhhHHHHHhhcCCC-------CCcEEEEEcCCCeEEEc
Q 008845 82 FSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 82 ~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 115 (551)
+.|.+ ..+++.|++. ..|++||||++|+|+..
T Consensus 96 l~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 96 IADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred EECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 55544 4688999973 67999999999999885
No 169
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.21 E-value=7.1e-11 Score=98.99 Aligned_cols=69 Identities=16% Similarity=0.425 Sum_probs=57.3
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh-hcC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LFK 96 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 96 (551)
+|+ ++|.||++||++|+.+.|.|.++++.++.. ++.++.|+++.+.. .++. .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~-----------------------~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQR-----------------------EFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccch-----------------------hhHHhhcC
Confidence 578 999999999999999999999999999854 48888888886322 3554 599
Q ss_pred CCCCcEEEEEcCCCe
Q 008845 97 VMGIPHLVILDENGK 111 (551)
Q Consensus 97 v~~~P~~~lid~~G~ 111 (551)
+.++||+++++++++
T Consensus 76 v~~~Pti~~f~~~~~ 90 (109)
T cd02993 76 LKSFPTILFFPKNSR 90 (109)
T ss_pred CCcCCEEEEEcCCCC
Confidence 999999999976654
No 170
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.21 E-value=1.3e-10 Score=111.22 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=80.0
Q ss_pred ceeecccC-CCc-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHh----h---CCCCcc
Q 008845 11 LRVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS----K---MPWLAV 80 (551)
Q Consensus 11 ~~v~l~~~-~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~----~---~~~~~~ 80 (551)
..++++++ +|| +||+|| +.||++|..++|.|+++++++++.| ++|++|++|. ....+.|.+ + .+..+.
T Consensus 88 ~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds-~~~h~aw~~~~~~~~g~~~l~fP 165 (261)
T PTZ00137 88 VQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDS-PFSHKAWKELDVRQGGVSPLKFP 165 (261)
T ss_pred eEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCC-HHHHHHHHhhhhhhccccCcceE
Confidence 46899998 888 888877 8999999999999999999998875 9999999986 344444443 2 233344
Q ss_pred ccCChhhHHHHHhhcCCC-----CCcEEEEEcCCCeEEEc
Q 008845 81 PFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 115 (551)
Q Consensus 81 ~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~ 115 (551)
.+.|.+ ..+++.||+. ..|+++|||++|+|+..
T Consensus 166 lLsD~~--~~iakayGv~~~~g~a~R~tFIID~dG~I~~~ 203 (261)
T PTZ00137 166 LFSDIS--REVSKSFGLLRDEGFSHRASVLVDKAGVVKHV 203 (261)
T ss_pred EEEcCC--hHHHHHcCCCCcCCceecEEEEECCCCEEEEE
Confidence 455554 5799999985 58999999999999985
No 171
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.20 E-value=4.2e-11 Score=101.03 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=59.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.|+++++++. ++.++.|+++.. .+++.|+|+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~~~------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAEKA------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEchhh------------------------HHHHhcCCC
Confidence 5899999999999999999999999998875 356666666532 478999999
Q ss_pred CcceEEEECCCCcEEEccc
Q 008845 419 GIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~ 437 (551)
++||++++ ++|+.+.+..
T Consensus 76 ~~Pt~~~f-~~G~~v~~~~ 93 (113)
T cd02957 76 VLPTLLVY-KNGELIDNIV 93 (113)
T ss_pred cCCEEEEE-ECCEEEEEEe
Confidence 99999999 7899988753
No 172
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.20 E-value=1.6e-10 Score=99.64 Aligned_cols=82 Identities=12% Similarity=0.237 Sum_probs=64.3
Q ss_pred ecccCceeec--ccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCcccc
Q 008845 6 IYELLLRVKL--DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 82 (551)
Q Consensus 6 ~~~~~~~v~l--~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 82 (551)
.+.+...+.. .+-.++ |||.|||+||+||+.+.|.|.++++++++ .+.|+.|++|...+
T Consensus 7 ~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~d---------------- 68 (142)
T PLN00410 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPD---------------- 68 (142)
T ss_pred hhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHH----------------
Confidence 4555555442 222567 99999999999999999999999999874 37788999997754
Q ss_pred CChhhHHHHHhhcCCCCCcEEE-EEcCCCe-EEE
Q 008845 83 SDSETRDKLDELFKVMGIPHLV-ILDENGK-VLS 114 (551)
Q Consensus 83 ~~~~~~~~l~~~~~v~~~P~~~-lid~~G~-i~~ 114 (551)
+++.|+|++.|+++ ++ ++|+ .+.
T Consensus 69 --------la~~y~I~~~~t~~~ff-k~g~~~vd 93 (142)
T PLN00410 69 --------FNTMYELYDPCTVMFFF-RNKHIMID 93 (142)
T ss_pred --------HHHHcCccCCCcEEEEE-ECCeEEEE
Confidence 99999999887777 66 8888 444
No 173
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.20 E-value=1.2e-10 Score=109.15 Aligned_cols=70 Identities=24% Similarity=0.523 Sum_probs=58.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+|||+||++|+.+.|.++++++++++. +.+..|+++..+ .+++.|+|+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~~-----------------------~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRAL-----------------------NLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcccH-----------------------HHHHHcCCC
Confidence 579999999999999999999999999998753 666666555443 689999999
Q ss_pred CcceEEEECCCCcEEEc
Q 008845 419 GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~ 435 (551)
++||+++++ +|+++..
T Consensus 106 ~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQY 121 (224)
T ss_pred cCCEEEEEE-CCEEEEe
Confidence 999999996 7887654
No 174
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.20 E-value=1.3e-10 Score=95.19 Aligned_cols=71 Identities=21% Similarity=0.414 Sum_probs=61.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.+.++.+++.++ +.++.|++|..+ ++++.|+|.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~-----------------------~l~~~~~v~ 66 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ-----------------------EIAEAAGIM 66 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCCe
Confidence 789999999999999999999999998888643 778888877654 588999999
Q ss_pred CcceEEEECCCCcEEEcc
Q 008845 419 GIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~ 436 (551)
++|+++++ ++|+++.+.
T Consensus 67 ~vPt~~i~-~~g~~v~~~ 83 (97)
T cd02949 67 GTPTVQFF-KDKELVKEI 83 (97)
T ss_pred eccEEEEE-ECCeEEEEE
Confidence 99999999 579888763
No 175
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.19 E-value=8.7e-11 Score=97.52 Aligned_cols=73 Identities=32% Similarity=0.621 Sum_probs=59.2
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+++ ++|+|||+||++|+.+.|.+.++++.+...+.+.++.++++.+.. ..+++.|++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----------------------~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH----------------------DALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc----------------------HHHHHhCCC
Confidence 466 999999999999999999999999998754456677777765212 358899999
Q ss_pred CCCcEEEEEcCCCeEEE
Q 008845 98 MGIPHLVILDENGKVLS 114 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~ 114 (551)
.++|+++++ ++|+++.
T Consensus 74 ~~~Pt~~~~-~~g~~~~ 89 (104)
T cd02997 74 KGFPTFKYF-ENGKFVE 89 (104)
T ss_pred ccccEEEEE-eCCCeeE
Confidence 999999888 6787654
No 176
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.19 E-value=9.6e-11 Score=96.91 Aligned_cols=69 Identities=23% Similarity=0.552 Sum_probs=57.4
Q ss_pred cEEEEEecCCCHhhHhhhHHHHHHHHHhcCC-CCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCC
Q 008845 21 KIGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 99 (551)
Q Consensus 21 kvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 99 (551)
+++|+|||+||++|+.++|.+.+++++++.. ..+.++.|+++... .+++.|+|.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR------------------------ELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh------------------------hhHhhcCCCc
Confidence 3999999999999999999999999999752 24778877776543 4889999999
Q ss_pred CcEEEEEcCCCeEEE
Q 008845 100 IPHLVILDENGKVLS 114 (551)
Q Consensus 100 ~P~~~lid~~G~i~~ 114 (551)
+|+++++ ++|+.+.
T Consensus 74 ~Pt~~~~-~~g~~~~ 87 (102)
T cd03005 74 YPTLLLF-KDGEKVD 87 (102)
T ss_pred CCEEEEE-eCCCeee
Confidence 9999999 6776553
No 177
>PRK15000 peroxidase; Provisional
Probab=99.19 E-value=2.2e-10 Score=106.49 Aligned_cols=99 Identities=19% Similarity=0.294 Sum_probs=76.4
Q ss_pred eecccC-CCc-EEEEEec-CCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH----HhhCCC---Ccccc
Q 008845 13 VKLDSL-KGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY----FSKMPW---LAVPF 82 (551)
Q Consensus 13 v~l~~~-~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~----~~~~~~---~~~~~ 82 (551)
++++++ +|| ++|+||+ .||+.|..+++.|+++++++++.+ ++|++|++|.. ...+.| .++.+. .++.+
T Consensus 26 ~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g-~~vigvS~D~~-~~~~~w~~~~~~~~g~~~i~fpll 103 (200)
T PRK15000 26 FNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG-VEVVGVSFDSE-FVHNAWRNTPVDKGGIGPVKYAMV 103 (200)
T ss_pred eeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCH-HHHHHHHhhHHHhCCccccCceEE
Confidence 345554 799 9999998 499999999999999999998774 99999999943 333333 333332 33334
Q ss_pred CChhhHHHHHhhcCCC------CCcEEEEEcCCCeEEEc
Q 008845 83 SDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 83 ~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 115 (551)
.|.. ..+++.|++. ++|++++||++|+|+..
T Consensus 104 sD~~--~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 104 ADVK--REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred ECCC--cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 5554 4799999997 78999999999999984
No 178
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.19 E-value=9.4e-11 Score=96.88 Aligned_cols=70 Identities=23% Similarity=0.520 Sum_probs=58.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
++++++|+||++||++|+.+.|.|+++++.++.. .++.++.++.+..+ .+++.|+|
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~-----------------------~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAEK-----------------------DLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccchH-----------------------HHHHhCCC
Confidence 4899999999999999999999999999888753 13666666665443 68899999
Q ss_pred CCcceEEEECCCCc
Q 008845 418 SGIPMLVAIGPSGR 431 (551)
Q Consensus 418 ~~~P~~~lid~~G~ 431 (551)
+++|+++++++++.
T Consensus 68 ~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 SGFPTIKFFPKGKK 81 (102)
T ss_pred CcCCEEEEecCCCc
Confidence 99999999988776
No 179
>PTZ00062 glutaredoxin; Provisional
Probab=99.18 E-value=5.7e-11 Score=109.47 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=76.6
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCC
Q 008845 340 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 419 (551)
Q Consensus 340 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~ 419 (551)
..++++|||+||++|+.+.|.|.++.++++ ++.++.|+.| |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d-------------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA-------------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc-------------------------------cCccc
Confidence 568999999999999999999999999884 2555554321 89999
Q ss_pred cceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhccCCcc-----cccCCcceeeeeecCCceecC
Q 008845 420 IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN-----VKHALHEHELVLDRCGVYSCD 494 (551)
Q Consensus 420 ~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~ 494 (551)
+|+++++ ++|+.+.+- .+.+..+|...++......+.. ++..-.+|++++.+++...|+
T Consensus 63 vPtfv~~-~~g~~i~r~---------------~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p 126 (204)
T PTZ00062 63 YGVFEFY-QNSQLINSL---------------EGCNTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFP 126 (204)
T ss_pred ceEEEEE-ECCEEEeee---------------eCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 9999999 799999883 3334455666666655443321 111222888999999876555
Q ss_pred CCC
Q 008845 495 GCD 497 (551)
Q Consensus 495 ~c~ 497 (551)
.|.
T Consensus 127 ~C~ 129 (204)
T PTZ00062 127 FCR 129 (204)
T ss_pred CCh
Confidence 554
No 180
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.18 E-value=6.9e-11 Score=99.55 Aligned_cols=69 Identities=9% Similarity=0.152 Sum_probs=57.0
Q ss_pred EEEEEecCCCHh--hH--hhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 22 IGLYFSASWCGP--CQ--RFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 22 vlv~F~a~wC~~--C~--~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+|++||++||++ |+ .+.|.+.+++.++-..+++.++.|++|.+.+ ++++|+|
T Consensus 30 vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~------------------------La~~~~I 85 (120)
T cd03065 30 CLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK------------------------VAKKLGL 85 (120)
T ss_pred EEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH------------------------HHHHcCC
Confidence 888899999976 99 7788888888777322358899999987754 9999999
Q ss_pred CCCcEEEEEcCCCeEEEc
Q 008845 98 MGIPHLVILDENGKVLSD 115 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (551)
+++||++++ ++|+++..
T Consensus 86 ~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 86 DEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred ccccEEEEE-ECCEEEEe
Confidence 999999999 79987753
No 181
>PTZ00051 thioredoxin; Provisional
Probab=99.18 E-value=5.2e-11 Score=97.80 Aligned_cols=69 Identities=28% Similarity=0.609 Sum_probs=57.9
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.++ ++|+||++||++|+.+.|.+.++++++. ++.++.|+.+.. ..+++.|++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDEL------------------------SEVAEKENI 69 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcch------------------------HHHHHHCCC
Confidence 466 9999999999999999999999999765 466777776643 358899999
Q ss_pred CCCcEEEEEcCCCeEEEc
Q 008845 98 MGIPHLVILDENGKVLSD 115 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (551)
.++|+++++ ++|+++..
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ceeeEEEEE-eCCeEEEE
Confidence 999998888 79988864
No 182
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.18 E-value=2.5e-11 Score=102.65 Aligned_cols=78 Identities=31% Similarity=0.592 Sum_probs=58.7
Q ss_pred eecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHH
Q 008845 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 91 (551)
Q Consensus 13 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (551)
++.+..++| |+|+|||+||++|+.+.|.+.+........ ..++.|+++.+.+ .+
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~--~~fv~v~vd~~~~-----------------------~~ 66 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS--HNFVMVNLEDDEE-----------------------PK 66 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc--CcEEEEEecCCCC-----------------------ch
Confidence 345556788 999999999999999999999977655422 3466667765432 13
Q ss_pred HhhcCCCC--CcEEEEEcCCCeEEEc
Q 008845 92 DELFKVMG--IPHLVILDENGKVLSD 115 (551)
Q Consensus 92 ~~~~~v~~--~P~~~lid~~G~i~~~ 115 (551)
...|++.+ +|+++++|++|+++.+
T Consensus 67 ~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 67 DEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred hhhcccCCCccceEEEECCCCCCchh
Confidence 35677776 9999999999998763
No 183
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.18 E-value=2.6e-10 Score=106.60 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=77.4
Q ss_pred ceeecccCCC-c--EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhh------CCCCccc
Q 008845 11 LRVKLDSLKG-K--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK------MPWLAVP 81 (551)
Q Consensus 11 ~~v~l~~~~g-k--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~------~~~~~~~ 81 (551)
..+++++++| | +|+.||++||+.|..+++.|+++++++++.+ +.|++|++|. .....+|.+. .+..+..
T Consensus 15 g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g-v~vigvS~D~-~~~~~~~~~~i~~~~~~~~~fpi 92 (203)
T cd03016 15 GPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN-VKLIGLSVDS-VESHIKWIEDIEEYTGVEIPFPI 92 (203)
T ss_pred CcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEECCC-HHHHHHHHhhHHHhcCCCCceeE
Confidence 4689999988 6 4557889999999999999999999998774 8999999995 3333334332 3444444
Q ss_pred cCChhhHHHHHhhcCCC----C----CcEEEEEcCCCeEEEc
Q 008845 82 FSDSETRDKLDELFKVM----G----IPHLVILDENGKVLSD 115 (551)
Q Consensus 82 ~~~~~~~~~l~~~~~v~----~----~P~~~lid~~G~i~~~ 115 (551)
+.|.+ ..+++.|++. + .|+++|||++|+|+..
T Consensus 93 l~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 93 IADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred EECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 55654 4688999976 2 3579999999999874
No 184
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.17 E-value=1.2e-10 Score=98.17 Aligned_cols=72 Identities=25% Similarity=0.383 Sum_probs=57.0
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
++ ++|+|||+||++|+.++|.|.++++++++.. .+.+..++++.+.. ..+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~----------------------~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN----------------------VALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh----------------------HHHHHhCCC
Confidence 46 9999999999999999999999999986532 36677777654332 358899999
Q ss_pred CCCcEEEEEcCCCeEEE
Q 008845 98 MGIPHLVILDENGKVLS 114 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~ 114 (551)
+++|+++++ ++|....
T Consensus 77 ~~~Pt~~lf-~~~~~~~ 92 (114)
T cd02992 77 TGYPTLRYF-PPFSKEA 92 (114)
T ss_pred CCCCEEEEE-CCCCccC
Confidence 999999999 5555433
No 185
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.17 E-value=2.5e-10 Score=107.11 Aligned_cols=69 Identities=23% Similarity=0.484 Sum_probs=57.9
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|+||||||++|+.+.|.+++++++++. .+.+..++++.. ..++++|+|.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~------------------------~~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRA------------------------LNLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCccc------------------------HHHHHHcCCC
Confidence 46 99999999999999999999999999974 466776666644 3588999999
Q ss_pred CCcEEEEEcCCCeEEEc
Q 008845 99 GIPHLVILDENGKVLSD 115 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~~ 115 (551)
++||+++++ +|+++..
T Consensus 106 ~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQY 121 (224)
T ss_pred cCCEEEEEE-CCEEEEe
Confidence 999999995 7877653
No 186
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.17 E-value=9e-11 Score=98.47 Aligned_cols=79 Identities=22% Similarity=0.461 Sum_probs=63.3
Q ss_pred CCCEEEEEEec-------CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHH
Q 008845 338 AGKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 410 (551)
Q Consensus 338 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 410 (551)
+|++|+|+||| +||++|+.+.|.|.++.++++++ +.++.|++|..+ .-.+....
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~----------------~w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRP----------------YWRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcc----------------cccCcchh
Confidence 47899999999 99999999999999999988743 788888887643 01122347
Q ss_pred HHHhcCCC-CcceEEEECCCCcEEEc
Q 008845 411 LSRKFKVS-GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 411 l~~~~~v~-~~P~~~lid~~G~i~~~ 435 (551)
+++.|+|+ ++||+++++..++++..
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecch
Confidence 88999998 99999999766666554
No 187
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.16 E-value=1.7e-10 Score=95.28 Aligned_cols=70 Identities=26% Similarity=0.517 Sum_probs=58.8
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+++ ++|+||++||++|+.+.|.++++++.++..+++.++.++++.. ..+++.|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------------------------~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE------------------------KDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch------------------------HHHHHhCCC
Confidence 678 9999999999999999999999999997654577777776654 358899999
Q ss_pred CCCcEEEEEcCCCeE
Q 008845 98 MGIPHLVILDENGKV 112 (551)
Q Consensus 98 ~~~P~~~lid~~G~i 112 (551)
.++|+++++++++.+
T Consensus 68 ~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 68 SGFPTIKFFPKGKKP 82 (102)
T ss_pred CcCCEEEEecCCCcc
Confidence 999999999776653
No 188
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.16 E-value=1.5e-10 Score=95.13 Aligned_cols=68 Identities=16% Similarity=0.319 Sum_probs=60.4
Q ss_pred cEEEEEecCC--CHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 21 KIGLYFSASW--CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 21 kvlv~F~a~w--C~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
.++|.||++| ||+|+.+.|.|.++++++.+ .+.++.|+++... .++..|+|+
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~------------------------~la~~f~V~ 82 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQ------------------------ALAARFGVL 82 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCH------------------------HHHHHcCCC
Confidence 3999999997 99999999999999999974 4778888888764 499999999
Q ss_pred CCcEEEEEcCCCeEEEc
Q 008845 99 GIPHLVILDENGKVLSD 115 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~~ 115 (551)
++||++++ ++|+++..
T Consensus 83 sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 83 RTPALLFF-RDGRYVGV 98 (111)
T ss_pred cCCEEEEE-ECCEEEEE
Confidence 99999999 89998875
No 189
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.16 E-value=3e-10 Score=93.62 Aligned_cols=70 Identities=26% Similarity=0.627 Sum_probs=60.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.|.++.+++.++ +.++.|+.+... .+++.|+|.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP-----------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 579999999999999999999999998888643 888888877654 578999999
Q ss_pred CcceEEEECCCCcEEEc
Q 008845 419 GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~ 435 (551)
++|+++++ ++|+++.+
T Consensus 68 ~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVDR 83 (101)
T ss_pred cCCEEEEE-eCCcEeee
Confidence 99999999 68887765
No 190
>PTZ00051 thioredoxin; Provisional
Probab=99.15 E-value=1.7e-10 Score=94.75 Aligned_cols=71 Identities=18% Similarity=0.449 Sum_probs=59.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+... .+++.|+|+
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~-----------------------~~~~~~~v~ 70 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELS-----------------------EVAEKENIT 70 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchH-----------------------HHHHHCCCc
Confidence 7899999999999999999999999888653 3667777665432 589999999
Q ss_pred CcceEEEECCCCcEEEccc
Q 008845 419 GIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~ 437 (551)
++|+++++ ++|+++.+..
T Consensus 71 ~~Pt~~~~-~~g~~~~~~~ 88 (98)
T PTZ00051 71 SMPTFKVF-KNGSVVDTLL 88 (98)
T ss_pred eeeEEEEE-eCCeEEEEEe
Confidence 99999888 7999987743
No 191
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.15 E-value=2.4e-10 Score=96.35 Aligned_cols=75 Identities=25% Similarity=0.488 Sum_probs=57.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.+.++++++++....+.+..++.+.+. ...+++.|+|+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---------------------NVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---------------------hHHHHHhCCCC
Confidence 579999999999999999999999999998754233666666554332 23689999999
Q ss_pred CcceEEEECCCCcEEEc
Q 008845 419 GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~ 435 (551)
++|+++++.+ |.....
T Consensus 78 ~~Pt~~lf~~-~~~~~~ 93 (114)
T cd02992 78 GYPTLRYFPP-FSKEAT 93 (114)
T ss_pred CCCEEEEECC-CCccCC
Confidence 9999999954 544333
No 192
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.15 E-value=2.5e-10 Score=93.52 Aligned_cols=69 Identities=23% Similarity=0.540 Sum_probs=57.5
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|+||++||++|+.+.|.|.++++++. .++.++.++.+.. ..+++.|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~--~~i~~~~vd~~~~------------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF--PSVLFLSIEAEEL------------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC--CceEEEEEccccC------------------------HHHHHhcCCc
Confidence 67 9999999999999999999999999873 2567777665543 3488999999
Q ss_pred CCcEEEEEcCCCeEEEc
Q 008845 99 GIPHLVILDENGKVLSD 115 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~~ 115 (551)
++|+++++ .+|+++.+
T Consensus 68 ~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 68 AVPTFVFF-RNGTIVDR 83 (97)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 58988764
No 193
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.14 E-value=2.2e-10 Score=95.10 Aligned_cols=74 Identities=23% Similarity=0.536 Sum_probs=58.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.++++++.++.. ..+.++.++++.+. ...+++.|+|+
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---------------------~~~~~~~~~i~ 74 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPE---------------------HDALKEEYNVK 74 (104)
T ss_pred CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCc---------------------cHHHHHhCCCc
Confidence 679999999999999999999999999988742 23566666665421 23688999999
Q ss_pred CcceEEEECCCCcEEEc
Q 008845 419 GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~ 435 (551)
++|+++++ ++|+++.+
T Consensus 75 ~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 75 GFPTFKYF-ENGKFVEK 90 (104)
T ss_pred cccEEEEE-eCCCeeEE
Confidence 99999888 57887655
No 194
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.14 E-value=7.7e-10 Score=103.11 Aligned_cols=133 Identities=23% Similarity=0.436 Sum_probs=105.2
Q ss_pred ccee-cCCCCeeecccCCCCEEEEEEecCCCh-hHHhhhHHHHHHHHHHh-hcCCCeEEEEEeCCC---ChHHHHHHHh-
Q 008845 322 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIK-ERNESLEVVFISSDR---DQTSFDEFFK- 394 (551)
Q Consensus 322 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~vv~vs~d~---~~~~~~~~~~- 394 (551)
+|.+ +.+|+.+.+.+++||+++|+|..+.|| .|..++..|.++.+++. ....++++++|++|. +++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 6877 999999999999999999999999999 59999999999999998 556789999999984 4677788888
Q ss_pred cC--CCcccccCchhhHHHHHhcCCCC---------------cceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHH
Q 008845 395 GM--PWLALPFGDARKASLSRKFKVSG---------------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 457 (551)
Q Consensus 395 ~~--~~~~~~~~~d~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 457 (551)
.. .|..+....+...++++.|+|.. ...++++|++|+++...... +. -+
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~-------------~~-~~ 194 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG-------------EP-PE 194 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC-------------CC-hH
Confidence 22 36666666677778899888863 23589999999998873211 11 35
Q ss_pred HHHHHHHHHhc
Q 008845 458 EIDGQYNEMAK 468 (551)
Q Consensus 458 ~l~~~l~~~~~ 468 (551)
++.+.++.+++
T Consensus 195 ~i~~~l~~l~~ 205 (207)
T COG1999 195 EIAADLKKLLK 205 (207)
T ss_pred HHHHHHHHHhh
Confidence 56777776654
No 195
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.13 E-value=4.5e-10 Score=104.83 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=79.7
Q ss_pred cCceeecccCCCc-EEEEEec-CCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhh------C-CCCc
Q 008845 9 LLLRVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK------M-PWLA 79 (551)
Q Consensus 9 ~~~~v~l~~~~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~------~-~~~~ 79 (551)
.++++++++++|| ++|+||+ .||++|..+++.|.++++++.+.+ ++|++|+.|.... ...+... . +..+
T Consensus 25 ~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g-~~vv~IS~d~~~~-~~~~~~~~~~~~~~~~~~f 102 (199)
T PTZ00253 25 SFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN-CEVLACSMDSEYA-HLQWTLQERKKGGLGTMAI 102 (199)
T ss_pred CCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEeCCCHHH-HHHHHhChHhhCCcccccc
Confidence 4578999999999 9999994 889999999999999999999874 9999999986543 3333211 1 1233
Q ss_pred cccCChhhHHHHHhhcCCC------CCcEEEEEcCCCeEEEc
Q 008845 80 VPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 80 ~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 115 (551)
..+.|.+ ..+++.|++. .+|+++|||++|+|+..
T Consensus 103 pll~D~~--~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 103 PMLADKT--KSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred ceEECcH--hHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence 3344544 5799999985 46999999999999874
No 196
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.13 E-value=3.7e-10 Score=92.49 Aligned_cols=70 Identities=24% Similarity=0.596 Sum_probs=60.1
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.++ ++|+||++||++|+.+.|.+.++++++.+ ++.++.++++.+. .+.+.+++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~------------------------~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQ------------------------EIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCH------------------------HHHHHCCC
Confidence 466 99999999999999999999999999874 4788888887654 38889999
Q ss_pred CCCcEEEEEcCCCeEEEc
Q 008845 98 MGIPHLVILDENGKVLSD 115 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (551)
.++|+++++ ++|+++..
T Consensus 66 ~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 66 MGTPTVQFF-KDKELVKE 82 (97)
T ss_pred eeccEEEEE-ECCeEEEE
Confidence 999999999 57888753
No 197
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.13 E-value=7.8e-11 Score=114.50 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=67.4
Q ss_pred ceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHH
Q 008845 11 LRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 89 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (551)
+...++++.|+ +||+||++||++|+.++|.|+++++++. +.|+.|++|..... .++....+ .
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~-----------~fp~~~~d--~ 219 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLP-----------GFPNARPD--A 219 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccc-----------cCCcccCC--H
Confidence 34678889999 9999999999999999999999999983 78999999875421 12222222 3
Q ss_pred HHHhhcCCCCCcEEEEEcCCCeEE
Q 008845 90 KLDELFKVMGIPHLVILDENGKVL 113 (551)
Q Consensus 90 ~l~~~~~v~~~P~~~lid~~G~i~ 113 (551)
.+.+.|+|.++|+++|+|++|..+
T Consensus 220 ~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 220 GQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred HHHHHcCCCcCCeEEEEECCCCEE
Confidence 478899999999999999855433
No 198
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.12 E-value=4.4e-10 Score=95.69 Aligned_cols=74 Identities=20% Similarity=0.489 Sum_probs=57.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh-------HHHHHHHhcCCCcccccCchhhHHH
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ-------TSFDEFFKGMPWLALPFGDARKASL 411 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~-------~~~~~~~~~~~~~~~~~~~d~~~~l 411 (551)
|+.++|+|+++|||+|+.+.|.|.++.++. +..+..|++|.+. +++. ++
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~-------------------~~ 78 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLT-------------------AF 78 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHH-------------------HH
Confidence 778999999999999999999999988872 2678899998542 1222 34
Q ss_pred HHhc----CCCCcceEEEECCCCcEEEccc
Q 008845 412 SRKF----KVSGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 412 ~~~~----~v~~~P~~~lid~~G~i~~~~~ 437 (551)
.+.| +|.++||++++ ++|+.+.+..
T Consensus 79 ~~~~~i~~~i~~~PT~v~~-k~Gk~v~~~~ 107 (122)
T TIGR01295 79 RSRFGIPTSFMGTPTFVHI-TDGKQVSVRC 107 (122)
T ss_pred HHHcCCcccCCCCCEEEEE-eCCeEEEEEe
Confidence 4444 46679999999 8999988743
No 199
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.11 E-value=5.2e-10 Score=101.55 Aligned_cols=88 Identities=14% Similarity=0.190 Sum_probs=67.8
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
+. |||+||++||++|+.+.|.|.++++++. .+.++.|+++.. .+...|+|.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-------------------------hhHHhCCCC
Confidence 45 9999999999999999999999999985 477777777743 277889999
Q ss_pred CCcEEEEEcCCCeEEEcC-cchhhhhcCCCCCCchHHHHHHHHH
Q 008845 99 GIPHLVILDENGKVLSDG-GVEIIREYGVEGYPFTVERIKEMKE 141 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 141 (551)
++||++++ ++|+++..- |. ...+.. .++.+.++.++.
T Consensus 135 ~vPTllly-k~G~~v~~~vG~---~~~~g~--~f~~~~le~~L~ 172 (175)
T cd02987 135 ALPALLVY-KGGELIGNFVRV---TEDLGE--DFDAEDLESFLV 172 (175)
T ss_pred CCCEEEEE-ECCEEEEEEech---HHhcCC--CCCHHHHHHHHH
Confidence 99999999 899988642 11 112222 467777777664
No 200
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.10 E-value=1.8e-10 Score=97.04 Aligned_cols=91 Identities=29% Similarity=0.509 Sum_probs=63.5
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHH---HhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhh
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYN---ELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 94 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~---~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (551)
+|| ++|+||++||++|+.+.+.+.+..+ .++. ++.++.++++.+......++...+...+ ......+.+.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 77 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNV----RLSNKELAQR 77 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSC----HHHHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhh----hHHHHHHHHH
Confidence 578 9999999999999999999886433 3332 4788888888776655555554433111 1122479999
Q ss_pred cCCCCCcEEEEEcCCCeEEEc
Q 008845 95 FKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 95 ~~v~~~P~~~lid~~G~i~~~ 115 (551)
|+|+++|+++++|++|+++..
T Consensus 78 ~~v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 78 YGVNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp TT--SSSEEEECTTTSCEEEE
T ss_pred cCCCccCEEEEEcCCCCEEEE
Confidence 999999999999999998863
No 201
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.10 E-value=5.2e-10 Score=95.28 Aligned_cols=92 Identities=17% Similarity=0.324 Sum_probs=62.1
Q ss_pred ecccCceeecccC-----CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCc
Q 008845 6 IYELLLRVKLDSL-----KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLA 79 (551)
Q Consensus 6 ~~~~~~~v~l~~~-----~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 79 (551)
+|+.-..++..++ .|+ ++|+|+++|||+|+.+.|.|.++.++. ++.+..|++|.+..
T Consensus 4 ~i~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~------------- 66 (122)
T TIGR01295 4 NIKGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGS------------- 66 (122)
T ss_pred hhccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccC-------------
Confidence 3444445554333 356 899999999999999999999999873 36789999885421
Q ss_pred cccCChhhHHHHHhhc----CCCCCcEEEEEcCCCeEEEc
Q 008845 80 VPFSDSETRDKLDELF----KVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 80 ~~~~~~~~~~~l~~~~----~v~~~P~~~lid~~G~i~~~ 115 (551)
....+......+.+.| ++.++||++++ ++|+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 67 FEMSSLNDLTAFRSRFGIPTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred cCcccHHHHHHHHHHcCCcccCCCCCEEEEE-eCCeEEEE
Confidence 0000000112344555 45679999999 89988874
No 202
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.09 E-value=4.6e-10 Score=93.25 Aligned_cols=67 Identities=25% Similarity=0.556 Sum_probs=57.1
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC-CHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
++ ++|.||++||++|+.+.|.+.++++.++..+++.++.++++. . ..+++.|++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------------------------~~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN------------------------KDLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc------------------------hhhHHhCCC
Confidence 66 999999999999999999999999999744457777777775 3 358999999
Q ss_pred CCCcEEEEEcCCC
Q 008845 98 MGIPHLVILDENG 110 (551)
Q Consensus 98 ~~~P~~~lid~~G 110 (551)
.++|++++++.+|
T Consensus 74 ~~~P~~~~~~~~~ 86 (105)
T cd02998 74 SGFPTLKFFPKGS 86 (105)
T ss_pred CCcCEEEEEeCCC
Confidence 9999999997665
No 203
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.09 E-value=8.7e-10 Score=92.78 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
++.++|+||++||++|+.+.|.|+++...+ + .+.+..|++|..+ ++++.|+|+
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~-----------------------~l~~~~~v~ 74 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDK-----------------------EKAEKYGVE 74 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCH-----------------------HHHHHcCCC
Confidence 567899999999999999999999998775 3 3788888888654 589999999
Q ss_pred CcceEEEECCC
Q 008845 419 GIPMLVAIGPS 429 (551)
Q Consensus 419 ~~P~~~lid~~ 429 (551)
++|++++++.+
T Consensus 75 ~vPt~~i~~~g 85 (113)
T cd02975 75 RVPTTIFLQDG 85 (113)
T ss_pred cCCEEEEEeCC
Confidence 99999999643
No 204
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.09 E-value=8.3e-10 Score=103.73 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=77.8
Q ss_pred eeec-ccCCCc-EEE-EEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHH--HHHHHHhh---CCCCccccC
Q 008845 12 RVKL-DSLKGK-IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AFKGYFSK---MPWLAVPFS 83 (551)
Q Consensus 12 ~v~l-~~~~gk-vlv-~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~--~~~~~~~~---~~~~~~~~~ 83 (551)
.+.+ ++++|| ++| +||++||+.|..+++.|+++++++++.+ ++|++||+|.... .|.+++++ .+..+..+.
T Consensus 24 ~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g-~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPlls 102 (215)
T PRK13191 24 KIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN-TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIA 102 (215)
T ss_pred CEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEE
Confidence 3566 447999 555 7889999999999999999999998774 9999999996433 35555554 234444456
Q ss_pred ChhhHHHHHhhcCCC-------CCcEEEEEcCCCeEEEc
Q 008845 84 DSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 84 ~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 115 (551)
|.. ..+++.|++. ..|+++|||++|+|+..
T Consensus 103 D~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 103 DPM--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred CCc--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 655 5789999974 36999999999999984
No 205
>PRK13189 peroxiredoxin; Provisional
Probab=99.09 E-value=9.6e-10 Score=103.92 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=75.0
Q ss_pred eeeccc-CCCc-EE-EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHh---h-C--CCCcccc
Q 008845 12 RVKLDS-LKGK-IG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS---K-M--PWLAVPF 82 (551)
Q Consensus 12 ~v~l~~-~~gk-vl-v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~-~--~~~~~~~ 82 (551)
.+++++ ++|| ++ ++||++||+.|..+++.|+++++++++. +++|++|++|.. ....+|.+ + . +..+..+
T Consensus 26 ~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~-~~h~aw~~~~~~~~g~~i~fPll 103 (222)
T PRK13189 26 PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQV-FSHIKWVEWIKEKLGVEIEFPII 103 (222)
T ss_pred CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCH-HHHHHHHHhHHHhcCcCcceeEE
Confidence 477776 4899 55 5678999999999999999999999877 489999999954 33334433 2 2 2333334
Q ss_pred CChhhHHHHHhhcCCC-------CCcEEEEEcCCCeEEEc
Q 008845 83 SDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 83 ~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 115 (551)
.|.+ ..+++.|++. ..|+++|||++|+|+..
T Consensus 104 sD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 104 ADDR--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred EcCc--cHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 5544 4688999975 46999999999999874
No 206
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.08 E-value=8e-10 Score=100.29 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=66.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++|||+||++||++|+.+.|.|.+++.++. .+.++.|+++.. .++..|+|+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch------------------------hhHHhCCCC
Confidence 4699999999999999999999999998874 267777766532 378899999
Q ss_pred CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHH
Q 008845 419 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 459 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 459 (551)
++||++++ ++|+++.+..+.. ..|+. .|+...++.+
T Consensus 135 ~vPTllly-k~G~~v~~~vG~~--~~~g~--~f~~~~le~~ 170 (175)
T cd02987 135 ALPALLVY-KGGELIGNFVRVT--EDLGE--DFDAEDLESF 170 (175)
T ss_pred CCCEEEEE-ECCEEEEEEechH--HhcCC--CCCHHHHHHH
Confidence 99999999 7999998743321 12222 3555555444
No 207
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.08 E-value=2.7e-09 Score=100.08 Aligned_cols=73 Identities=23% Similarity=0.480 Sum_probs=62.5
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
.. |+|.|||.||+.++.++|.+.++++.++++- +-++|+.++|++.+ ..|+.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----------------------~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----------------------DDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----------------------hHHhhhhcc
Confidence 45 9999999999999999999999998887653 24678888887776 579999999
Q ss_pred CCCcEEEEEcCCCeEEEc
Q 008845 98 MGIPHLVILDENGKVLSD 115 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (551)
..+||+.++ .+|.+..+
T Consensus 71 ~KyPTlKvf-rnG~~~~r 87 (375)
T KOG0912|consen 71 NKYPTLKVF-RNGEMMKR 87 (375)
T ss_pred ccCceeeee-eccchhhh
Confidence 999999999 89988763
No 208
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.07 E-value=1.6e-09 Score=89.17 Aligned_cols=68 Identities=31% Similarity=0.674 Sum_probs=58.7
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|+||++||++|+.+.|.+.++++++.. ++.++.++++.+. .+++.|++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENP------------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCH------------------------HHHHHcCCC
Confidence 56 99999999999999999999999988863 4888888887654 488999999
Q ss_pred CCcEEEEEcCCCeEEE
Q 008845 99 GIPHLVILDENGKVLS 114 (551)
Q Consensus 99 ~~P~~~lid~~G~i~~ 114 (551)
++|+++++ ++|+++.
T Consensus 68 ~~P~~~~~-~~g~~~~ 82 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVD 82 (101)
T ss_pred cCCEEEEE-eCCcEee
Confidence 99999999 6787664
No 209
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.07 E-value=6.9e-10 Score=91.94 Aligned_cols=65 Identities=29% Similarity=0.571 Sum_probs=56.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.+.+++++++.. +.++.++.+... .+++.|+|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~~-----------------------~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVHQ-----------------------SLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcchH-----------------------HHHHHCCCC
Confidence 567999999999999999999999999988754 788888776543 588999999
Q ss_pred CcceEEEECCC
Q 008845 419 GIPMLVAIGPS 429 (551)
Q Consensus 419 ~~P~~~lid~~ 429 (551)
++|++++++++
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999644
No 210
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.06 E-value=1.1e-09 Score=90.64 Aligned_cols=64 Identities=25% Similarity=0.496 Sum_probs=54.8
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|+||++||++|+.+.|.|.++++++.. .+.++.++++... .+++.|+|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~------------------------~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQ------------------------SLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchH------------------------HHHHHCCCC
Confidence 56 99999999999999999999999998874 4778888777543 488999999
Q ss_pred CCcEEEEEcCCC
Q 008845 99 GIPHLVILDENG 110 (551)
Q Consensus 99 ~~P~~~lid~~G 110 (551)
++|++++++ +|
T Consensus 72 ~~P~~~~~~-~~ 82 (103)
T cd03001 72 GFPTIKVFG-AG 82 (103)
T ss_pred ccCEEEEEC-CC
Confidence 999999995 44
No 211
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.05 E-value=7.5e-10 Score=91.95 Aligned_cols=72 Identities=22% Similarity=0.475 Sum_probs=58.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-ChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~-~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
+++++|.||++||++|+.+.|.+.++.+.++.. .++.++.++.+. . ..+++.|+|
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~-----------------------~~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEAN-----------------------KDLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCcc-----------------------hhhHHhCCC
Confidence 679999999999999999999999999998622 246666666655 3 268999999
Q ss_pred CCcceEEEECCCCcEEE
Q 008845 418 SGIPMLVAIGPSGRTIT 434 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~ 434 (551)
+++|++++++++|+...
T Consensus 74 ~~~P~~~~~~~~~~~~~ 90 (105)
T cd02998 74 SGFPTLKFFPKGSTEPV 90 (105)
T ss_pred CCcCEEEEEeCCCCCcc
Confidence 99999999987765443
No 212
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.03 E-value=6.7e-10 Score=93.22 Aligned_cols=78 Identities=22% Similarity=0.465 Sum_probs=60.0
Q ss_pred CCCc-EEEEEec-------CCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHH
Q 008845 18 LKGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 89 (551)
Q Consensus 18 ~~gk-vlv~F~a-------~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (551)
.+|+ ++|+||| +||++|+.+.|.+.+++++++. ++.++.|+++.... ..+ ...
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~---------------w~d--~~~ 79 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPY---------------WRD--PNN 79 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCccc---------------ccC--cch
Confidence 3578 9999999 9999999999999999999873 47888888875431 000 013
Q ss_pred HHHhhcCCC-CCcEEEEEcCCCeEEE
Q 008845 90 KLDELFKVM-GIPHLVILDENGKVLS 114 (551)
Q Consensus 90 ~l~~~~~v~-~~P~~~lid~~G~i~~ 114 (551)
.+...|+|. ++||+++++..++++.
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecc
Confidence 588899998 9999999965545544
No 213
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.03 E-value=1.6e-09 Score=89.84 Aligned_cols=66 Identities=23% Similarity=0.543 Sum_probs=53.8
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|+||++||++|+.+.|.+.++++.++...++.+..++++.. .++..+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-------------------------hhhhhccCC
Confidence 57 9999999999999999999999999997633577777777643 256678899
Q ss_pred CCcEEEEEcCCC
Q 008845 99 GIPHLVILDENG 110 (551)
Q Consensus 99 ~~P~~~lid~~G 110 (551)
++|+++++..++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999995433
No 214
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.02 E-value=1.4e-09 Score=91.51 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=53.3
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
++ ++|+||++||++|+.+.|.+.++++.+. .+.+..|+.+..+ .+++.|+|.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~---~i~~~~vd~d~~~------------------------~l~~~~~v~ 74 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELSD---KLKLEIYDFDEDK------------------------EKAEKYGVE 74 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhcC---ceEEEEEeCCcCH------------------------HHHHHcCCC
Confidence 44 8899999999999999999999998762 4788888888654 488999999
Q ss_pred CCcEEEEEcC
Q 008845 99 GIPHLVILDE 108 (551)
Q Consensus 99 ~~P~~~lid~ 108 (551)
++|++++++.
T Consensus 75 ~vPt~~i~~~ 84 (113)
T cd02975 75 RVPTTIFLQD 84 (113)
T ss_pred cCCEEEEEeC
Confidence 9999999953
No 215
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.00 E-value=3.3e-09 Score=97.58 Aligned_cols=118 Identities=25% Similarity=0.419 Sum_probs=96.6
Q ss_pred ccee-cCCCCeeecccCCCCEEEEEEecCCCh-hHHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCC---ChHHHHHHHhc
Q 008845 322 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKER-NESLEVVFISSDR---DQTSFDEFFKG 395 (551)
Q Consensus 322 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~vv~vs~d~---~~~~~~~~~~~ 395 (551)
.|.| +.+|+.+.-.+|.||++|+||..++|| .|..++..|.++.+++..+ ...+.-|+|++|. +.+.+++|+++
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 4666 999999999999999999999999999 5999999999999988765 2234478999986 67888999998
Q ss_pred CC--CcccccCchhhHHHHHhcCCCCc--c-------------eEEEECCCCcEEEcccch
Q 008845 396 MP--WLALPFGDARKASLSRKFKVSGI--P-------------MLVAIGPSGRTITKEARD 439 (551)
Q Consensus 396 ~~--~~~~~~~~d~~~~l~~~~~v~~~--P-------------~~~lid~~G~i~~~~~~~ 439 (551)
+. .+.+.-..+.-..+++.|.|..- | .+|||||+|..+...|++
T Consensus 201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence 74 46677777777889999988532 3 379999999998875544
No 216
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.00 E-value=1.7e-09 Score=88.72 Aligned_cols=73 Identities=23% Similarity=0.469 Sum_probs=59.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.+.++++.++.. .++.++.++.+... .+++.|+|+
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~-----------------------~~~~~~~i~ 70 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTANN-----------------------DLCSEYGVR 70 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccchH-----------------------HHHHhCCCC
Confidence 569999999999999999999999999988511 24777777766533 689999999
Q ss_pred CcceEEEECCCCcEEEc
Q 008845 419 GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~ 435 (551)
++|++++++++|+.+.+
T Consensus 71 ~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 71 GYPTIKLFPNGSKEPVK 87 (101)
T ss_pred CCCEEEEEcCCCccccc
Confidence 99999999887644443
No 217
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.98 E-value=3.1e-09 Score=87.18 Aligned_cols=68 Identities=25% Similarity=0.518 Sum_probs=57.2
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+++ ++|+||++||++|+.+.|.+.++++.+.....+.++.++++.. ..+++.|+|
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------------~~~~~~~~i 69 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN------------------------NDLCSEYGV 69 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch------------------------HHHHHhCCC
Confidence 456 9999999999999999999999999985223578888877753 358999999
Q ss_pred CCCcEEEEEcCCC
Q 008845 98 MGIPHLVILDENG 110 (551)
Q Consensus 98 ~~~P~~~lid~~G 110 (551)
.++|++++++++|
T Consensus 70 ~~~Pt~~~~~~~~ 82 (101)
T cd02961 70 RGYPTIKLFPNGS 82 (101)
T ss_pred CCCCEEEEEcCCC
Confidence 9999999997665
No 218
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.97 E-value=4.5e-09 Score=83.03 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=51.8
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcc
Q 008845 342 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 421 (551)
Q Consensus 342 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P 421 (551)
.+..||++||++|+...|.|+++++.++.. +.++.|+++.++ ++++.|+++++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENP-----------------------QKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCH-----------------------HHHHHcCCccCC
Confidence 467899999999999999999999888643 788888877654 467889999999
Q ss_pred eEEEECCCCcEE
Q 008845 422 MLVAIGPSGRTI 433 (551)
Q Consensus 422 ~~~lid~~G~i~ 433 (551)
++++ +|+.+
T Consensus 56 t~~~---~g~~~ 64 (82)
T TIGR00411 56 AIVI---NGDVE 64 (82)
T ss_pred EEEE---CCEEE
Confidence 9886 56643
No 219
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.95 E-value=2.1e-09 Score=89.06 Aligned_cols=67 Identities=22% Similarity=0.532 Sum_probs=53.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.|.+.++++.++.. ..+.+..++.+.. .++..+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch------------------------hhhhhccCC
Confidence 689999999999999999999999999988652 2356665655432 366788899
Q ss_pred CcceEEEECCCC
Q 008845 419 GIPMLVAIGPSG 430 (551)
Q Consensus 419 ~~P~~~lid~~G 430 (551)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999996554
No 220
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.93 E-value=4.3e-09 Score=108.61 Aligned_cols=70 Identities=19% Similarity=0.402 Sum_probs=57.8
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008845 337 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 416 (551)
Q Consensus 337 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 416 (551)
..++++||+|||+||++|+.+.|.|+++++++++. ++.++.|++|.+.. ....+.|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~---------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQK---------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCcc---------------------HHHHHHcC
Confidence 35899999999999999999999999999998754 47888888886531 12346899
Q ss_pred CCCcceEEEECCC
Q 008845 417 VSGIPMLVAIGPS 429 (551)
Q Consensus 417 v~~~P~~~lid~~ 429 (551)
|+++||+++|..+
T Consensus 426 I~~~PTii~Fk~g 438 (463)
T TIGR00424 426 LGSFPTILFFPKH 438 (463)
T ss_pred CCccceEEEEECC
Confidence 9999999999543
No 221
>PTZ00102 disulphide isomerase; Provisional
Probab=98.93 E-value=2.4e-08 Score=106.69 Aligned_cols=185 Identities=17% Similarity=0.213 Sum_probs=112.0
Q ss_pred CCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcEEEEEcCC
Q 008845 30 WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 109 (551)
Q Consensus 30 wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~ 109 (551)
-+.......+.+.++++++++ ++.++.++.+.-.. .+.+.|++..+|++.+.+.+
T Consensus 258 ~~~~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~-----------------------~~~~~~gi~~~P~~~i~~~~ 312 (477)
T PTZ00102 258 TTEDYDKYKSVVRKVARKLRE--KYAFVWLDTEQFGS-----------------------HAKEHLLIEEFPGLAYQSPA 312 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccC--ceEEEEEechhcch-----------------------hHHHhcCcccCceEEEEcCC
Confidence 455666788999999999985 35566655442211 26678999999998887655
Q ss_pred CeEEEcCcchhhhhcCCCCCCchHHHHHHHHHHHHHHHhhcccccccc-cCCcceeecCCCceeecc-ccCCcEEEEEEe
Q 008845 110 GKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLT-SHSRDFVISSDGRKISVS-DLEGKTIGLYFS 187 (551)
Q Consensus 110 G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~-~~~gk~v~l~f~ 187 (551)
|+-.... ....-.+.+.|..++...........+.+-.. ....+.+....++.+... ...|+.++++|+
T Consensus 313 ~~y~~~~---------~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~ 383 (477)
T PTZ00102 313 GRYLLPP---------AKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIY 383 (477)
T ss_pred cccCCCc---------cccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEE
Confidence 5322110 00001245667676655432211111111100 001111222223333221 246789999999
Q ss_pred cCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCcCCcceEEEEC
Q 008845 188 MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIG 267 (551)
Q Consensus 188 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v~~~P~lvi~~ 267 (551)
++||++|+.+.|.+.+++..++..+ . +.++.+|.+. ...+++.|+++++||+++++
T Consensus 384 a~wC~~C~~~~p~~~~~a~~~~~~~-~--v~~~~id~~~---------------------~~~~~~~~~v~~~Pt~~~~~ 439 (477)
T PTZ00102 384 APWCGHCKNLEPVYNELGEKYKDND-S--IIVAKMNGTA---------------------NETPLEEFSWSAFPTILFVK 439 (477)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCC-c--EEEEEEECCC---------------------CccchhcCCCcccCeEEEEE
Confidence 9999999999999999998877532 2 4455555543 33457789999999999998
Q ss_pred CCCCc
Q 008845 268 PDGKT 272 (551)
Q Consensus 268 ~~gk~ 272 (551)
.+++.
T Consensus 440 ~~~~~ 444 (477)
T PTZ00102 440 AGERT 444 (477)
T ss_pred CCCcc
Confidence 76654
No 222
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.4e-09 Score=99.24 Aligned_cols=73 Identities=30% Similarity=0.593 Sum_probs=59.8
Q ss_pred ecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHH
Q 008845 14 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 92 (551)
Q Consensus 14 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (551)
+++...+| |+|+|+|+||+||++.+|.+..++.+|+. ..++.|++|..+ ..+
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~------------------------~ta 67 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECR------------------------GTA 67 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhh------------------------chh
Confidence 45666788 99999999999999999999999999973 456666666443 477
Q ss_pred hhcCCCCCcEEEEEcCCCeEEE
Q 008845 93 ELFKVMGIPHLVILDENGKVLS 114 (551)
Q Consensus 93 ~~~~v~~~P~~~lid~~G~i~~ 114 (551)
.-+||.+.||++++ ++|.-+.
T Consensus 68 a~~gV~amPTFiff-~ng~kid 88 (288)
T KOG0908|consen 68 ATNGVNAMPTFIFF-RNGVKID 88 (288)
T ss_pred hhcCcccCceEEEE-ecCeEee
Confidence 88999999999999 7776554
No 223
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.93 E-value=4.6e-09 Score=89.05 Aligned_cols=99 Identities=12% Similarity=0.189 Sum_probs=67.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHH---HHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLID---AYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
+||+|+|+|++.||++|+.+...+-+ +.+.+.. ++.+|.+..|.... .+. .
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~----------------------~~~-~ 75 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDK----------------------NLS-P 75 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCC----------------------CcC-c
Confidence 48999999999999999998887532 2233322 25444555443210 000 1
Q ss_pred cCCCCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHh
Q 008845 415 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 467 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~ 467 (551)
.+ .++|+++++|++|+++.+- ...++...|-+...+++.|.+.+++.+
T Consensus 76 ~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 76 DG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred cC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHHHHHH
Confidence 22 5799999999999998874 335666777788888888877776654
No 224
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.92 E-value=6.1e-09 Score=95.82 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++|||.||++||++|+.+.|.|.+++.++. .+.++.|+++ . ....|+++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad--~------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIIST--Q------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhH--H------------------------hHhhCCCC
Confidence 5699999999999999999999999999985 2666666654 1 24789999
Q ss_pred CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHH
Q 008845 419 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 460 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 460 (551)
++||++++ ++|+++.+..+.. ..|+. .++..+++.+.
T Consensus 152 ~lPTlliy-k~G~~v~~ivG~~--~~gg~--~~~~~~lE~~L 188 (192)
T cd02988 152 NLPTILVY-RNGDIVKQFIGLL--EFGGM--NTTMEDLEWLL 188 (192)
T ss_pred CCCEEEEE-ECCEEEEEEeCch--hhCCC--CCCHHHHHHHH
Confidence 99999999 8999998754321 22333 35556555443
No 225
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.92 E-value=1e-08 Score=87.08 Aligned_cols=85 Identities=25% Similarity=0.219 Sum_probs=59.4
Q ss_pred ecccCCCc-EEEEEecCCCHhhHhhhHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHH
Q 008845 14 KLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 89 (551)
Q Consensus 14 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (551)
..+.-++| |+|+|+|+||++|+.+.+.. .++.+.+.+ ++.+|.++.+...+..+.+. .
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~----------------~ 70 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYM----------------N 70 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHH----------------H
Confidence 34455788 99999999999999987632 345555543 47777777765443222221 1
Q ss_pred HHHhhcCCCCCcEEEEEcCCCeEEEcC
Q 008845 90 KLDELFKVMGIPHLVILDENGKVLSDG 116 (551)
Q Consensus 90 ~l~~~~~v~~~P~~~lid~~G~i~~~~ 116 (551)
.....|++.++|+++++|++|+++...
T Consensus 71 ~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 71 AAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred HHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 123367999999999999999999864
No 226
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.91 E-value=6.4e-09 Score=95.65 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=65.7
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+++ |||+||++||++|+.+.|.|.+++.++. .+.++.|+++. ....|++
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~---------------------------~~~~~~i 150 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQ---------------------------CIPNYPD 150 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHH---------------------------hHhhCCC
Confidence 356 9999999999999999999999999986 36677766651 2367999
Q ss_pred CCCcEEEEEcCCCeEEEcC-cchhhhhcCCCCCCchHHHHHHHHH
Q 008845 98 MGIPHLVILDENGKVLSDG-GVEIIREYGVEGYPFTVERIKEMKE 141 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 141 (551)
.++||++++ ++|+++..- |.. ..|.. .++.+.++.++.
T Consensus 151 ~~lPTlliy-k~G~~v~~ivG~~---~~gg~--~~~~~~lE~~L~ 189 (192)
T cd02988 151 KNLPTILVY-RNGDIVKQFIGLL---EFGGM--NTTMEDLEWLLV 189 (192)
T ss_pred CCCCEEEEE-ECCEEEEEEeCch---hhCCC--CCCHHHHHHHHH
Confidence 999999999 899988752 221 22322 467777777663
No 227
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.91 E-value=3.4e-09 Score=109.36 Aligned_cols=68 Identities=16% Similarity=0.339 Sum_probs=56.7
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+++ +||+||||||++|+.+.|.|.+++++++.. ++.++.|++|.+.. ....+.|+|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~----------------------~~~~~~~~I 426 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQK----------------------EFAKQELQL 426 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCcc----------------------HHHHHHcCC
Confidence 577 999999999999999999999999999765 37888898886532 123468999
Q ss_pred CCCcEEEEEcCCC
Q 008845 98 MGIPHLVILDENG 110 (551)
Q Consensus 98 ~~~P~~~lid~~G 110 (551)
.++||+++| ++|
T Consensus 427 ~~~PTii~F-k~g 438 (463)
T TIGR00424 427 GSFPTILFF-PKH 438 (463)
T ss_pred CccceEEEE-ECC
Confidence 999999999 454
No 228
>PLN02309 5'-adenylylsulfate reductase
Probab=98.87 E-value=1.1e-08 Score=105.76 Aligned_cols=69 Identities=19% Similarity=0.443 Sum_probs=56.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH-hcC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 416 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~ 416 (551)
+++++||+|||+||++|+.+.|.+.++++++... ++.++.|++|... ..++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcc----------------------hHHHHhhCC
Confidence 5899999999999999999999999999998754 5888888877332 14664 699
Q ss_pred CCCcceEEEECCCC
Q 008845 417 VSGIPMLVAIGPSG 430 (551)
Q Consensus 417 v~~~P~~~lid~~G 430 (551)
|+++||++++.++.
T Consensus 420 I~~~PTil~f~~g~ 433 (457)
T PLN02309 420 LGSFPTILLFPKNS 433 (457)
T ss_pred CceeeEEEEEeCCC
Confidence 99999999995443
No 229
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.83 E-value=1.5e-08 Score=109.10 Aligned_cols=75 Identities=19% Similarity=0.450 Sum_probs=58.9
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHH
Q 008845 336 DLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 412 (551)
Q Consensus 336 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 412 (551)
..+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.++++++.. ...++.
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~-------------------~~~~l~ 527 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNA-------------------EDVALL 527 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCCh-------------------hhHHHH
Confidence 34589999999999999999998864 45555553 37777777765421 234788
Q ss_pred HhcCCCCcceEEEECCCCcEE
Q 008845 413 RKFKVSGIPMLVAIGPSGRTI 433 (551)
Q Consensus 413 ~~~~v~~~P~~~lid~~G~i~ 433 (551)
+.|++.++|+++++|++|+++
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHcCCCCCCEEEEECCCCCCc
Confidence 999999999999999999985
No 230
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.81 E-value=2.9e-08 Score=78.36 Aligned_cols=61 Identities=26% Similarity=0.457 Sum_probs=50.6
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
+..||++||++|+.+.|.+++++++++. .+.++.|+.+.+.+ +.+.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~------------------------~~~~~~v~~vPt 56 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQ------------------------KAMEYGIMAVPA 56 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHH------------------------HHHHcCCccCCE
Confidence 5679999999999999999999998863 47888888876543 678899999999
Q ss_pred EEEEcCCCeE
Q 008845 103 LVILDENGKV 112 (551)
Q Consensus 103 ~~lid~~G~i 112 (551)
+++ +|+.
T Consensus 57 ~~~---~g~~ 63 (82)
T TIGR00411 57 IVI---NGDV 63 (82)
T ss_pred EEE---CCEE
Confidence 876 5653
No 231
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.6e-08 Score=103.72 Aligned_cols=70 Identities=29% Similarity=0.604 Sum_probs=58.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
...++|.||||||++|++++|.+++++..+++....+.+. .+|.+.+ ..++..|+|+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~La--kVDat~~---------------------~~~~~~y~v~ 98 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLA--KVDATEE---------------------SDLASKYEVR 98 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeE--Eeecchh---------------------hhhHhhhcCC
Confidence 5789999999999999999999999999998764445554 4555542 4799999999
Q ss_pred CcceEEEECCCCcE
Q 008845 419 GIPMLVAIGPSGRT 432 (551)
Q Consensus 419 ~~P~~~lid~~G~i 432 (551)
++||+-|+ ++|+.
T Consensus 99 gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 99 GYPTLKIF-RNGRS 111 (493)
T ss_pred CCCeEEEE-ecCCc
Confidence 99999999 78885
No 232
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.80 E-value=2.3e-08 Score=80.43 Aligned_cols=66 Identities=35% Similarity=0.700 Sum_probs=55.9
Q ss_pred c-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCC
Q 008845 21 K-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 99 (551)
Q Consensus 21 k-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 99 (551)
+ ++|+||++||++|+.+.|.+.++++. . +++.++.++++... .+.+.|++.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~------------------------~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENP------------------------ELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCCh------------------------hHHHhcCccc
Confidence 6 99999999999999999999999887 2 25888888888643 4888999999
Q ss_pred CcEEEEEcCCCeEEE
Q 008845 100 IPHLVILDENGKVLS 114 (551)
Q Consensus 100 ~P~~~lid~~G~i~~ 114 (551)
+|+++++ .+|+++.
T Consensus 64 ~P~~~~~-~~g~~~~ 77 (93)
T cd02947 64 IPTFLFF-KNGKEVD 77 (93)
T ss_pred ccEEEEE-ECCEEEE
Confidence 9999999 5676554
No 233
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.80 E-value=3.4e-08 Score=79.41 Aligned_cols=69 Identities=25% Similarity=0.597 Sum_probs=57.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+++++|+||++||++|+.+.+.+.++.+. . .++.++.++.+... .+++.|++.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~-----------------------~~~~~~~v~ 62 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDENP-----------------------ELAEEYGVR 62 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCCh-----------------------hHHHhcCcc
Confidence 48999999999999999999999998877 2 24888888887643 588999999
Q ss_pred CcceEEEECCCCcEEEc
Q 008845 419 GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~ 435 (551)
++|+++++ .+|+++..
T Consensus 63 ~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 63 SIPTFLFF-KNGKEVDR 78 (93)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 46776655
No 234
>PLN02309 5'-adenylylsulfate reductase
Probab=98.79 E-value=1.7e-08 Score=104.28 Aligned_cols=65 Identities=17% Similarity=0.387 Sum_probs=54.8
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh-hcC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LFK 96 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 96 (551)
+++ ++|+||||||++|+.+.|.|.++++++... ++.++.|+++.+. ..++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~-----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQ-----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcc-----------------------hHHHHhhCC
Confidence 577 999999999999999999999999999765 4888888888332 23664 699
Q ss_pred CCCCcEEEEEc
Q 008845 97 VMGIPHLVILD 107 (551)
Q Consensus 97 v~~~P~~~lid 107 (551)
|.++||++++.
T Consensus 420 I~~~PTil~f~ 430 (457)
T PLN02309 420 LGSFPTILLFP 430 (457)
T ss_pred CceeeEEEEEe
Confidence 99999999994
No 235
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.76 E-value=4.3e-08 Score=87.44 Aligned_cols=102 Identities=25% Similarity=0.293 Sum_probs=81.9
Q ss_pred cCceeeccc-CCCc-EEEEEe-cCCCHhhHhh-hHHHHHHHHHhcCCCCE-EEEEEeCCCCHHHHHHHHhhCCC--Cccc
Q 008845 9 LLLRVKLDS-LKGK-IGLYFS-ASWCGPCQRF-TPILAEVYNELSRQGDF-EVIFVSGDEDDEAFKGYFSKMPW--LAVP 81 (551)
Q Consensus 9 ~~~~v~l~~-~~gk-vlv~F~-a~wC~~C~~~-~p~l~~~~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~--~~~~ 81 (551)
.|+.++|++ ++|+ ++|+|| +.||+.|..+ ++.|++.++++...| . .|+.|+.| +....++|.++.+. ....
T Consensus 17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D-~~~~~~~~~~~~~~~~~f~l 94 (155)
T cd03013 17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVN-DPFVMKAWGKALGAKDKIRF 94 (155)
T ss_pred CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECC-CHHHHHHHHHhhCCCCcEEE
Confidence 478899999 5888 666666 8999999999 999999999998775 6 59999998 56678889988887 3444
Q ss_pred cCChhhHHHHHhhcCCC------C-----CcEEEEEcCCCeEEEc
Q 008845 82 FSDSETRDKLDELFKVM------G-----IPHLVILDENGKVLSD 115 (551)
Q Consensus 82 ~~~~~~~~~l~~~~~v~------~-----~P~~~lid~~G~i~~~ 115 (551)
++|.+ ..+++.||+. + ...+++|| +|+|++.
T Consensus 95 LsD~~--~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 95 LADGN--GEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred EECCC--HHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 56654 5799999983 1 36679998 7999874
No 236
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.75 E-value=3.7e-08 Score=92.59 Aligned_cols=95 Identities=19% Similarity=0.355 Sum_probs=80.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
...|+|.|||.||+.++.+.|.+.+++.+++++..+-++|+.++|.+.+ ..++.+|.|.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 5789999999999999999999999999999887667899999998864 4789999999
Q ss_pred CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhc
Q 008845 419 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 468 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~ 468 (551)
.+||+-++ .+|.+..+..| ..+.+++|.+-|+..+.
T Consensus 72 KyPTlKvf-rnG~~~~rEYR-------------g~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKREYR-------------GQRSVEALIEFIEKQLS 107 (375)
T ss_pred cCceeeee-eccchhhhhhc-------------cchhHHHHHHHHHHHhc
Confidence 99999999 89998887443 34566777777766553
No 237
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.74 E-value=5e-08 Score=80.72 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=56.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
|+++++.|+++||++|..+.|.+.+++++++++ +.++.|++|..+ .+++.|++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~~-----------------------~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDFG-----------------------RHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhhH-----------------------HHHHHcCCC
Confidence 789999999999999999999999999999865 788887776543 588999999
Q ss_pred --CcceEEEECC
Q 008845 419 --GIPMLVAIGP 428 (551)
Q Consensus 419 --~~P~~~lid~ 428 (551)
++|++++++.
T Consensus 66 ~~~~P~~~~~~~ 77 (103)
T cd02982 66 EEDLPVIAIINL 77 (103)
T ss_pred hhhCCEEEEEec
Confidence 9999999976
No 238
>PHA02125 thioredoxin-like protein
Probab=98.74 E-value=4.4e-08 Score=75.82 Aligned_cols=57 Identities=26% Similarity=0.597 Sum_probs=42.7
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
+++||++||++|+.+.|.|.++. +.++-|+.|..+ ++++.|+|+++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~-----------------------~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGV-----------------------ELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCH-----------------------HHHHHcCCceeCe
Confidence 78999999999999999886431 344555544433 6899999999999
Q ss_pred EEEECCCCcEEEc
Q 008845 423 LVAIGPSGRTITK 435 (551)
Q Consensus 423 ~~lid~~G~i~~~ 435 (551)
++ +|+.+.+
T Consensus 50 ~~----~g~~~~~ 58 (75)
T PHA02125 50 LV----NTSTLDR 58 (75)
T ss_pred EE----CCEEEEE
Confidence 87 4665544
No 239
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.74 E-value=2.7e-08 Score=107.27 Aligned_cols=75 Identities=24% Similarity=0.502 Sum_probs=59.3
Q ss_pred ccCCCc-EEEEEecCCCHhhHhhhHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHH
Q 008845 16 DSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 91 (551)
Q Consensus 16 ~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (551)
+..+|| |+|+|||+||++|+.+.|.. .++.+.++ ++.++.++++++.+ ...++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~--------------------~~~~l 526 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNA--------------------EDVAL 526 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCCh--------------------hhHHH
Confidence 334689 99999999999999988865 56777775 46777888775432 11468
Q ss_pred HhhcCCCCCcEEEEEcCCCeEE
Q 008845 92 DELFKVMGIPHLVILDENGKVL 113 (551)
Q Consensus 92 ~~~~~v~~~P~~~lid~~G~i~ 113 (551)
.++|++.++|+++++|++|+++
T Consensus 527 ~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 527 LKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHHcCCCCCCEEEEECCCCCCc
Confidence 8999999999999999999875
No 240
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.74 E-value=5.7e-08 Score=73.44 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=49.5
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|+++||++|+...+.+.++..... ++.+..++++.+. ++.+.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~------------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFP------------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCH------------------------hHHHHcCCcccCE
Confidence 567999999999999999999976542 4788888877654 3788999999999
Q ss_pred EEEEcCCCeEEE
Q 008845 103 LVILDENGKVLS 114 (551)
Q Consensus 103 ~~lid~~G~i~~ 114 (551)
+++ +|+++.
T Consensus 56 i~i---~~~~~~ 64 (67)
T cd02973 56 IVI---NGKVEF 64 (67)
T ss_pred EEE---CCEEEE
Confidence 765 456654
No 241
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=6.4e-08 Score=83.72 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=90.4
Q ss_pred eecCCCCeeecccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hHHHHHHHhcCCC--
Q 008845 324 VVGKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFDEFFKGMPW-- 398 (551)
Q Consensus 324 ~~~~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~--~~~~~~~~~~~~~-- 398 (551)
+++...+.++|++++||+|++.||. .+.-.|..+.-.+...+.+++.. +-+|+++|+|.. .-+|.+.-++.+.
T Consensus 18 VVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~--n~eVig~S~DS~fshlAW~ntprk~gGlg 95 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL--NTEVLGISTDSVFSHLAWINTPRKQGGLG 95 (196)
T ss_pred EEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc--CCeEEEEeccchhhhhhHhcCchhhCCcC
Confidence 4577889999999999999999994 45557999999999999999876 689999999964 2344444444443
Q ss_pred -cccccCchhhHHHHHhcCCC------CcceEEEECCCCcEEEccc
Q 008845 399 -LALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 399 -~~~~~~~d~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 437 (551)
+++|++.|.+.++++.|||- .+..++|||++|.++....
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~ 141 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITI 141 (196)
T ss_pred ccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeee
Confidence 56999999999999999984 3567999999999987543
No 242
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.72 E-value=5.1e-08 Score=75.60 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=47.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
.|.||++|||+|+.+.|.++++.+++..+ +.+ +.+| +. ..+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~--~~v~-~~-----------------------~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEF--EKVT-DM-----------------------NEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEE--EEeC-CH-----------------------HHHHHcCCCcCCE
Confidence 37899999999999999999999987543 555 4444 22 1356799999999
Q ss_pred EEEECCCCcEEEc
Q 008845 423 LVAIGPSGRTITK 435 (551)
Q Consensus 423 ~~lid~~G~i~~~ 435 (551)
+++ +|+++..
T Consensus 53 i~i---~G~~~~~ 62 (76)
T TIGR00412 53 VAV---DGELVIM 62 (76)
T ss_pred EEE---CCEEEEE
Confidence 998 7887743
No 243
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.1e-07 Score=79.17 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=86.0
Q ss_pred cccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChHHHHHH
Q 008845 321 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 392 (551)
Q Consensus 321 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~-------~~~~~~~~ 392 (551)
-+|.+ +.+|++++|++++||++||.-.|+.|+.-. +-..|+.||++|+++ ++.|+...++. +.+++++|
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHH
Confidence 36767 899999999999999999999999999877 455699999999987 79999998863 45788999
Q ss_pred HhcCCCcccccCch------hhHHHHH----hcC-------CCCcceEEEECCCCcEEEccc
Q 008845 393 FKGMPWLALPFGDA------RKASLSR----KFK-------VSGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 393 ~~~~~~~~~~~~~d------~~~~l~~----~~~-------v~~~P~~~lid~~G~i~~~~~ 437 (551)
....-...||.... ....|.+ .-. |+.-=+-+|||++|+++.|..
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 88665577775421 1112222 211 222236799999999999943
No 244
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.71 E-value=1.3e-08 Score=95.18 Aligned_cols=77 Identities=17% Similarity=0.343 Sum_probs=57.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
....+|.||||||++|+++.|.+.+.-..+++-+..+.| -.+|.+.- ..++..|+|+
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikV--GKlDaT~f---------------------~aiAnefgiq 99 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKV--GKLDATRF---------------------PAIANEFGIQ 99 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceee--cccccccc---------------------hhhHhhhccC
Confidence 468999999999999999999999998888765333333 33444321 2589999999
Q ss_pred CcceEEEECCCCcEEEcccc
Q 008845 419 GIPMLVAIGPSGRTITKEAR 438 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~~ 438 (551)
|+||+.++..+..+-++++|
T Consensus 100 GYPTIk~~kgd~a~dYRG~R 119 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDYRGGR 119 (468)
T ss_pred CCceEEEecCCeeeecCCCc
Confidence 99999999544455555443
No 245
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.71 E-value=5.5e-07 Score=95.81 Aligned_cols=186 Identities=16% Similarity=0.175 Sum_probs=112.5
Q ss_pred EecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC--CCcEE
Q 008845 26 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--GIPHL 103 (551)
Q Consensus 26 F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~ 103 (551)
|-.....+|..+...+.++++.++.. .+.++.++.+.. ..++..+++. .+|.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~~~~-~i~f~~~d~~~~------------------------~~~~~~~~~~~~~~P~~ 296 (462)
T TIGR01130 242 NVDESLDPFEELRNRFLEAAKKFRGK-FVNFAVADEEDF------------------------GRELEYFGLKAEKFPAV 296 (462)
T ss_pred EecCCchHHHHHHHHHHHHHHHCCCC-eEEEEEecHHHh------------------------HHHHHHcCCCccCCceE
Confidence 33445667899999999999988741 355554433321 3477888887 69999
Q ss_pred EEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHHHHHHHHHhhcccccccccC-CcceeecCCCceeecc-ccCCcE
Q 008845 104 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSH-SRDFVISSDGRKISVS-DLEGKT 181 (551)
Q Consensus 104 ~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~-~~~gk~ 181 (551)
++++.+|..... +. ....+.+.+.++++....+.......+--... ....+....++.+... ...++.
T Consensus 297 vi~~~~~~~~y~--------~~--~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~ 366 (462)
T TIGR01130 297 AIQDLEGNKKYP--------MD--QEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKD 366 (462)
T ss_pred EEEeCCcccccC--------CC--cCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCe
Confidence 999877622221 11 11356777888776643222222111110000 0112222223322221 125789
Q ss_pred EEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCcCCcc
Q 008845 182 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 261 (551)
Q Consensus 182 v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v~~~P 261 (551)
++++|+++||++|..+.|.+.+++..++..... +.++.+|.+.. .+.. +++.++|
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~--i~~~~id~~~n----------------------~~~~-~~i~~~P 421 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESD--VVIAKMDATAN----------------------DVPP-FEVEGFP 421 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCc--EEEEEEECCCC----------------------ccCC-CCccccC
Confidence 999999999999999999999999998863223 44555554421 1223 8899999
Q ss_pred eEEEECCCCC
Q 008845 262 TLVIIGPDGK 271 (551)
Q Consensus 262 ~lvi~~~~gk 271 (551)
+++++..+++
T Consensus 422 t~~~~~~~~~ 431 (462)
T TIGR01130 422 TIKFVPAGKK 431 (462)
T ss_pred EEEEEeCCCC
Confidence 9999975544
No 246
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.3e-08 Score=83.24 Aligned_cols=109 Identities=21% Similarity=0.333 Sum_probs=89.2
Q ss_pred CCcccee-cCCCCeeecccCCCC-EEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhc
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 395 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 395 (551)
..|||++ +.+|..++|.++.|+ +||++|| +...|-|.++...+..-|++++.. +.+|+++|.|.. ...+.|...
T Consensus 68 ~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka--~aeV~GlS~D~s-~sqKaF~sK 144 (211)
T KOG0855|consen 68 AIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA--GAEVIGLSGDDS-ASQKAFASK 144 (211)
T ss_pred cCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc--CceEEeeccCch-HHHHHhhhh
Confidence 3489998 999999999999885 8888888 456678999999999999999875 589999999865 556667666
Q ss_pred CCCcccccCchhhHHHHHhcCCCCcc-------eEEEECCCCc
Q 008845 396 MPWLALPFGDARKASLSRKFKVSGIP-------MLVAIGPSGR 431 (551)
Q Consensus 396 ~~~~~~~~~~d~~~~l~~~~~v~~~P-------~~~lid~~G~ 431 (551)
+. +.+.++.|+.+++.+.+|+...| ..+|++++|.
T Consensus 145 qn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 145 QN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred cc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 65 67778899999999999997644 5777777654
No 247
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.69 E-value=8.1e-08 Score=74.46 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=46.8
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
.|.||++||++|+.+.|.+.++++++.. .+.++. ++ +.+ .+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~--v~-~~~------------------------~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEK--VT-DMN------------------------EILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEE--eC-CHH------------------------HHHHcCCCcCCE
Confidence 4789999999999999999999999863 355544 44 222 346699999999
Q ss_pred EEEEcCCCeEEE
Q 008845 103 LVILDENGKVLS 114 (551)
Q Consensus 103 ~~lid~~G~i~~ 114 (551)
+++ +|+++.
T Consensus 53 i~i---~G~~~~ 61 (76)
T TIGR00412 53 VAV---DGELVI 61 (76)
T ss_pred EEE---CCEEEE
Confidence 888 787773
No 248
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.69 E-value=1.5e-07 Score=85.66 Aligned_cols=108 Identities=25% Similarity=0.416 Sum_probs=83.6
Q ss_pred ccCceeecccCCCc-EEEEEecCCCH-hhHhhhHHHHHHHHHhcCCC-CEEEEEEeCCC---CHHHHHHHHhhCCCCccc
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGDE---DDEAFKGYFSKMPWLAVP 81 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~~-~~~vv~v~~d~---~~~~~~~~~~~~~~~~~~ 81 (551)
++|+.+++++++|| ++|+|.-+.|| .|...+..|.++.+++.+.+ ++++++|++|. +.+.+++|.+..+..+..
T Consensus 40 ~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~~~~~~ 119 (174)
T PF02630_consen 40 QDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFGPDFIG 119 (174)
T ss_dssp TTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHTTTCEE
T ss_pred CCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcCCCcce
Confidence 68999999999999 99999999997 89999999999999998754 79999999984 567889999887643333
Q ss_pred c-CChhhHHHHHhhcCCC----------------CCcEEEEEcCCCeEEEc
Q 008845 82 F-SDSETRDKLDELFKVM----------------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 82 ~-~~~~~~~~l~~~~~v~----------------~~P~~~lid~~G~i~~~ 115 (551)
. ........+.+.|++. ....++++|++|+++..
T Consensus 120 ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 120 LTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp EEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred eEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 2 2233345677777753 24577999999999864
No 249
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.68 E-value=7.8e-08 Score=72.66 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=50.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|+++|||+|++..+.|+++.+.. .++.+..++++.++ ++++.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~-----------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFP-----------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCH-----------------------hHHHHcCCcccCE
Confidence 67899999999999999998886543 24788888877654 5788999999999
Q ss_pred EEEECCCCcEEEc
Q 008845 423 LVAIGPSGRTITK 435 (551)
Q Consensus 423 ~~lid~~G~i~~~ 435 (551)
+++ +|+++..
T Consensus 56 i~i---~~~~~~~ 65 (67)
T cd02973 56 IVI---NGKVEFV 65 (67)
T ss_pred EEE---CCEEEEe
Confidence 865 4676654
No 250
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.65 E-value=8.1e-08 Score=79.96 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=48.7
Q ss_pred CCc-EEEEEec--CCCH---hhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC---CHHHHHHHHhhCCCCccccCChhhHH
Q 008845 19 KGK-IGLYFSA--SWCG---PCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DDEAFKGYFSKMPWLAVPFSDSETRD 89 (551)
Q Consensus 19 ~gk-vlv~F~a--~wC~---~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (551)
+.+ +||.||| |||+ +|+.++|++.+.+. .+.|..|+++. +.+ .
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~----------------------~ 68 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLN----------------------M 68 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhh----------------------H
Confidence 345 9999999 9999 88888888876654 25677777653 222 4
Q ss_pred HHHhhcCCC--CCcEEEEEcCCC
Q 008845 90 KLDELFKVM--GIPHLVILDENG 110 (551)
Q Consensus 90 ~l~~~~~v~--~~P~~~lid~~G 110 (551)
+|+++|+|+ ++||++++ ++|
T Consensus 69 ~L~~~y~I~~~gyPTl~lF-~~g 90 (116)
T cd03007 69 ELGERYKLDKESYPVIYLF-HGG 90 (116)
T ss_pred HHHHHhCCCcCCCCEEEEE-eCC
Confidence 699999999 99999999 555
No 251
>PHA02125 thioredoxin-like protein
Probab=98.65 E-value=1.1e-07 Score=73.48 Aligned_cols=56 Identities=32% Similarity=0.604 Sum_probs=42.0
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
+++|||+||++|+.+.|.|.++. +.++-|+.+.. .++++.|+|.++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~------------------------~~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEG------------------------VELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCC------------------------HHHHHHcCCceeCe
Confidence 78999999999999999987542 33455555543 35889999999999
Q ss_pred EEEEcCCCeEEE
Q 008845 103 LVILDENGKVLS 114 (551)
Q Consensus 103 ~~lid~~G~i~~ 114 (551)
++ +|+.+.
T Consensus 50 ~~----~g~~~~ 57 (75)
T PHA02125 50 LV----NTSTLD 57 (75)
T ss_pred EE----CCEEEE
Confidence 76 455543
No 252
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.64 E-value=1.3e-07 Score=80.22 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=60.5
Q ss_pred ecccCCCc-EEEEEecCCCHhhHhhhHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHH
Q 008845 14 KLDSLKGK-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 89 (551)
Q Consensus 14 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (551)
..+.-+|| |+|+|++.||++|+.+....- ++.+.+.+ ++.+|.+..+.+..
T Consensus 17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~----------------------- 71 (130)
T cd02960 17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDK----------------------- 71 (130)
T ss_pred HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCC-----------------------
Confidence 34445688 999999999999999976542 34444432 35555555543311
Q ss_pred HHHhhcCCCCCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHHHH
Q 008845 90 KLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 142 (551)
Q Consensus 90 ~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 142 (551)
.+ ...+ .++|+++++|++|+++.+ +...++...|...+..+..+.+.
T Consensus 72 ~~-~~~g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~ 118 (130)
T cd02960 72 NL-SPDG-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIEN 118 (130)
T ss_pred Cc-CccC-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHH
Confidence 00 0122 579999999999988875 23334445555555666555543
No 253
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.57 E-value=7e-07 Score=75.34 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=54.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
++|+++|+|+++||++|+.+.... .++.+.+... +.++.++++... ...++..
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e---------------------~~~~~~~ 71 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSE---------------------GQRFLQS 71 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCcc---------------------HHHHHHH
Confidence 489999999999999999987643 2233344332 444444443211 2368899
Q ss_pred cCCCCcceEEEECC-CCcEEEcc
Q 008845 415 FKVSGIPMLVAIGP-SGRTITKE 436 (551)
Q Consensus 415 ~~v~~~P~~~lid~-~G~i~~~~ 436 (551)
|++.++|+++++|+ +|+++.+-
T Consensus 72 ~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 72 YKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hCccCCCeEEEEeCccCcEeEEE
Confidence 99999999999999 89999873
No 254
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.54 E-value=3e-07 Score=73.47 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=58.2
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 335 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 335 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
.++++.+-+..|+++||++|+...+.+.++.+.+. ++.+..+++|..+ ++++.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~-----------------------e~a~~ 60 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQ-----------------------DEVEE 60 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCH-----------------------HHHHH
Confidence 45667888999999999999999999888876653 4788888877554 58999
Q ss_pred cCCCCcceEEEECCCCcEEEc
Q 008845 415 FKVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~~~ 435 (551)
|+|.++|++++ +|+.+..
T Consensus 61 ~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 61 RGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred cCCccCCEEEE---CCEEEEe
Confidence 99999999975 6888776
No 255
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.53 E-value=4.8e-07 Score=74.76 Aligned_cols=86 Identities=31% Similarity=0.513 Sum_probs=68.2
Q ss_pred CCcEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCc
Q 008845 178 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 257 (551)
Q Consensus 178 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v 257 (551)
.+++++++|+++||++|..+.|.+.+++++++++ +.|+.+|.++ ...+++.||+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-----v~f~~vd~~~---------------------~~~~~~~~~i 64 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-----LLFVVVDADD---------------------FGRHLEYFGL 64 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-----EEEEEEchHh---------------------hHHHHHHcCC
Confidence 3688999999999999999999999999999865 7888888775 5678999999
Q ss_pred C--CcceEEEECCC-C-CcccccchhhhhhcCCCCCCCChhhHHHHHH
Q 008845 258 S--TLPTLVIIGPD-G-KTLHSNVAEAIEEHGVGAFPFTPEKFAELAE 301 (551)
Q Consensus 258 ~--~~P~lvi~~~~-g-k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 301 (551)
. ++|++++++.. | ++..... .++.+.+.+++.
T Consensus 65 ~~~~~P~~~~~~~~~~~k~~~~~~------------~~~~~~l~~fi~ 100 (103)
T cd02982 65 KEEDLPVIAIINLSDGKKYLMPEE------------ELTAESLEEFVE 100 (103)
T ss_pred ChhhCCEEEEEecccccccCCCcc------------ccCHHHHHHHHH
Confidence 9 89999999863 3 3322211 246777777765
No 256
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.52 E-value=4e-07 Score=72.76 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=57.7
Q ss_pred cccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 15 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 15 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
+.++.+. -+..|+++||++|+...+.+.++...+. ++.+..++.+... ++++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~------------------------e~a~ 59 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQ------------------------DEVE 59 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCH------------------------HHHH
Confidence 4467788 7888999999999999999999987764 4778888877553 4889
Q ss_pred hcCCCCCcEEEEEcCCCeEEEc
Q 008845 94 LFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 94 ~~~v~~~P~~~lid~~G~i~~~ 115 (551)
.|+|.++|++++ +|+.+..
T Consensus 60 ~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HcCCccCCEEEE---CCEEEEe
Confidence 999999999964 6887764
No 257
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.46 E-value=7.8e-07 Score=74.11 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=42.8
Q ss_pred CCEEEEEEec--CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008845 339 GKTILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 416 (551)
Q Consensus 339 gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 416 (551)
.+.+||.|+| |||+ . .|.+.+|+.++......+.|.-|+++...+ ..+..|+++|+
T Consensus 18 ~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~------------------~~~~~L~~~y~ 75 (116)
T cd03007 18 FKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGE------------------KLNMELGERYK 75 (116)
T ss_pred CCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccc------------------hhhHHHHHHhC
Confidence 6789999999 7777 2 244444444443221124555555532100 01247999999
Q ss_pred CC--CcceEEEECCCC
Q 008845 417 VS--GIPMLVAIGPSG 430 (551)
Q Consensus 417 v~--~~P~~~lid~~G 430 (551)
|+ ++||+.|+. +|
T Consensus 76 I~~~gyPTl~lF~-~g 90 (116)
T cd03007 76 LDKESYPVIYLFH-GG 90 (116)
T ss_pred CCcCCCCEEEEEe-CC
Confidence 99 999999994 55
No 258
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.44 E-value=6.5e-07 Score=70.60 Aligned_cols=64 Identities=23% Similarity=0.621 Sum_probs=44.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
.||+++|+|++.||++|+.+...+ .++.+.+..+ +..+.|.++.... .. ..
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~~~~----------------------~~-~~ 69 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDDEDP----------------------NA-QF 69 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTTHHH----------------------HH-HH
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCCCCh----------------------hH-Hh
Confidence 389999999999999999998876 3344435543 7777777654321 11 11
Q ss_pred cCCCCcceEEEECC
Q 008845 415 FKVSGIPMLVAIGP 428 (551)
Q Consensus 415 ~~v~~~P~~~lid~ 428 (551)
...++|+++++||
T Consensus 70 -~~~~~P~~~~ldp 82 (82)
T PF13899_consen 70 -DRQGYPTFFFLDP 82 (82)
T ss_dssp -HHCSSSEEEEEET
T ss_pred -CCccCCEEEEeCC
Confidence 1166999999986
No 259
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.40 E-value=6.7e-08 Score=59.83 Aligned_cols=28 Identities=46% Similarity=1.158 Sum_probs=14.3
Q ss_pred ecCCCCCCCCc-eeEecccCCCCcccccc
Q 008845 492 SCDGCDEEGRV-WAFSCDECDFCLHPNCA 519 (551)
Q Consensus 492 ~~~~c~~~g~~-~~~~~~~~~~~~~~~~~ 519 (551)
.|+.|++.+.+ |.|+|.+|+|.||..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 68999999999 99999999999999996
No 260
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=2e-07 Score=95.40 Aligned_cols=66 Identities=27% Similarity=0.501 Sum_probs=56.2
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCC
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 100 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 100 (551)
.+|.||++|||||++++|.+.++++.+.... -+.|..|++-+... ..+|+.|+|+++
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N----------------------~~lCRef~V~~~ 117 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN----------------------VKLCREFSVSGY 117 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh----------------------hhhHhhcCCCCC
Confidence 8899999999999999999999999998775 35666666655444 579999999999
Q ss_pred cEEEEEcCC
Q 008845 101 PHLVILDEN 109 (551)
Q Consensus 101 P~~~lid~~ 109 (551)
|++.++-++
T Consensus 118 Ptlryf~~~ 126 (606)
T KOG1731|consen 118 PTLRYFPPD 126 (606)
T ss_pred ceeeecCCc
Confidence 999999655
No 261
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=4.2e-07 Score=93.10 Aligned_cols=69 Identities=30% Similarity=0.586 Sum_probs=56.8
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCC
Q 008845 340 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 419 (551)
Q Consensus 340 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~ 419 (551)
+.-+|.||++|||+|+++.|.+.++++.+..-..-+.|..|+.-... +..+|+.|+|++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE---------------------NVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh---------------------hhhhHhhcCCCC
Confidence 57899999999999999999999999998876444566666553332 457999999999
Q ss_pred cceEEEECCC
Q 008845 420 IPMLVAIGPS 429 (551)
Q Consensus 420 ~P~~~lid~~ 429 (551)
+|++..+.++
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999876
No 262
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=5.9e-06 Score=71.46 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=84.7
Q ss_pred cccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChHHHHHH
Q 008845 321 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 392 (551)
Q Consensus 321 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~-------~~~~~~~~ 392 (551)
-+|.+ +.+|+.++++.++||++|+.--|+.|+.-...-..|+.|+++|++. ++.|+...... ..+++..+
T Consensus 15 ydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPCNQFg~QEp~~n~Ei~~f 92 (171)
T KOG1651|consen 15 YDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPCNQFGNQEPGSNEEILNF 92 (171)
T ss_pred eeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEeccccccCcCCCCcHHHHHH
Confidence 36777 9999999999999999999999999999887778999999999987 79999998852 23567777
Q ss_pred HhcCCCcccccCc------hhhHHHHHhcC----------CCCcceEEEECCCCcEEEccc
Q 008845 393 FKGMPWLALPFGD------ARKASLSRKFK----------VSGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 393 ~~~~~~~~~~~~~------d~~~~l~~~~~----------v~~~P~~~lid~~G~i~~~~~ 437 (551)
+.......+|+.. +....+.+.+. |+.-=+-+|+|++|+++.|..
T Consensus 93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 7644434444321 12223333221 222236799999999999843
No 263
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.31 E-value=2.1e-06 Score=80.53 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=66.3
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 335 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 335 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
..+.++.-|++|+.+.|+.|..+.|.|..+.+++ ++.|+.||+|.... ..+|.... +..+++.
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~~~ 178 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPI-----------PSFPNPRP-DPGQAKR 178 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCC-----------cCCCCCCC-CHHHHHH
Confidence 3444778899999999999999999999999998 48999999996531 22332222 4568899
Q ss_pred cCCCCcceEEEECCCCcEEEc
Q 008845 415 FKVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~~~ 435 (551)
++|..+|+++|+++++.....
T Consensus 179 l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 179 LGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred cCCCcCCEEEEEECCCCeEEE
Confidence 999999999999998855444
No 264
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.30 E-value=8.5e-06 Score=76.07 Aligned_cols=109 Identities=21% Similarity=0.366 Sum_probs=83.8
Q ss_pred cccCceeecccCCCc-EEEEEecCCCH-hhHhhhHHHHHHHHHhc-CCC-CEEEEEEeCCC---CHHHHHHHHh-hCCCC
Q 008845 7 YELLLRVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELS-RQG-DFEVIFVSGDE---DDEAFKGYFS-KMPWL 78 (551)
Q Consensus 7 ~~~~~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~-~~~-~~~vv~v~~d~---~~~~~~~~~~-~~~~~ 78 (551)
-++|+.+++.+++|+ ++|+|.-+.|| .|..++..|.++.+++. ..+ ++.+++|++|. +.+.+++|.. .....
T Consensus 54 d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~ 133 (207)
T COG1999 54 DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPR 133 (207)
T ss_pred cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCC
Confidence 478999999999999 99999999999 89999999999999998 443 79999999984 5677788887 22222
Q ss_pred ccccCC-hhhHHHHHhhcCCCC---------------CcEEEEEcCCCeEEEc
Q 008845 79 AVPFSD-SETRDKLDELFKVMG---------------IPHLVILDENGKVLSD 115 (551)
Q Consensus 79 ~~~~~~-~~~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~ 115 (551)
+.-+.. .+....+++.|++.. ...++++|++|+++..
T Consensus 134 ~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 134 WIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred eeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 222222 444567888888763 2345889999988864
No 265
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.28 E-value=2.2e-06 Score=72.29 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=55.8
Q ss_pred eecccCCCc-EEEEEecCCCHhhHhhhHH-H--HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhH
Q 008845 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPI-L--AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETR 88 (551)
Q Consensus 13 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~-l--~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (551)
+..+.-++| ++|+|+++||++|+.+... | .++.+.+.+ ++.++.++++....
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~---------------------- 65 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEG---------------------- 65 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccH----------------------
Confidence 344555688 9999999999999998553 2 234444443 34455554443221
Q ss_pred HHHHhhcCCCCCcEEEEEcC-CCeEEEc
Q 008845 89 DKLDELFKVMGIPHLVILDE-NGKVLSD 115 (551)
Q Consensus 89 ~~l~~~~~v~~~P~~~lid~-~G~i~~~ 115 (551)
..+...|++.++|+++++|+ +|+++..
T Consensus 66 ~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 66 QRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 46889999999999999999 8988874
No 266
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.2e-05 Score=68.40 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=95.0
Q ss_pred CCcccee-cCCCCeeecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcC
Q 008845 319 GDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 396 (551)
Q Consensus 319 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 396 (551)
..|+|++ +.+.+.++++++.||..+|..+ +-..|.|..+...+++.+.++. +..|+.||+| .+-+.++|....
T Consensus 23 ~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~----~~~Vl~IS~D-LPFAq~RfC~ae 97 (158)
T COG2077 23 KAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG----NTVVLCISMD-LPFAQKRFCGAE 97 (158)
T ss_pred cCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC----CcEEEEEeCC-ChhHHhhhhhhc
Confidence 4589988 9999999999999986666555 6688999999999998887765 4789999998 568889999999
Q ss_pred CCcccccCch-hhHHHHHhcCCC--Cc-------ceEEEECCCCcEEEcccchhh
Q 008845 397 PWLALPFGDA-RKASLSRKFKVS--GI-------PMLVAIGPSGRTITKEARDMI 441 (551)
Q Consensus 397 ~~~~~~~~~d-~~~~l~~~~~v~--~~-------P~~~lid~~G~i~~~~~~~~~ 441 (551)
+.-++..++| ++..+.+.||+. .. .+.+++|.+|++++...-+.|
T Consensus 98 Gi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~ei 152 (158)
T COG2077 98 GIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPEI 152 (158)
T ss_pred CcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccchh
Confidence 9777766666 566788999973 33 478999999999998654443
No 267
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.6e-06 Score=74.07 Aligned_cols=102 Identities=25% Similarity=0.413 Sum_probs=79.6
Q ss_pred ceeecccCCCc-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC--CHHHHHHHHhhCCC---Cccc-c
Q 008845 11 LRVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE--DDEAFKGYFSKMPW---LAVP-F 82 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~--~~~~~~~~~~~~~~---~~~~-~ 82 (551)
..++++++.|| +++.|| +..-+-|..+...+++.+.++.+.| ++|+++|+|. +-..|.+...+..- ..+| +
T Consensus 24 ~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g-~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~Pmi 102 (194)
T COG0450 24 EEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG-VEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMI 102 (194)
T ss_pred eEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC-CEEEEEecCcHHHHHHHHhcHHhcCCccceecceE
Confidence 38999999999 888888 7888999999999999999999885 9999999995 23445555544543 3333 4
Q ss_pred CChhhHHHHHhhcCCC------CCcEEEEEcCCCeEEEc
Q 008845 83 SDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 83 ~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 115 (551)
.|.. .++++.|++. +.-.+|+||++|.|+..
T Consensus 103 aD~~--~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 103 ADPK--GEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred EcCc--hhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 4544 5799999985 35678999999999874
No 268
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.22 E-value=6.5e-06 Score=78.57 Aligned_cols=84 Identities=19% Similarity=0.291 Sum_probs=66.4
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 335 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 335 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
..+.++.-|++||.+.|+.|.++.|.|..+.++| ++.|+.||+|.... ..+|.... +..+++.
T Consensus 146 ~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~ 208 (256)
T TIGR02739 146 QQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLI-----------PGLPNSRS-DSGQAQH 208 (256)
T ss_pred HHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCccC-ChHHHHh
Confidence 3444678899999999999999999999999998 48999999997631 23343322 3457889
Q ss_pred cCCCCcceEEEECCCCcEEEc
Q 008845 415 FKVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~~~ 435 (551)
++|..+|+++|++++.+....
T Consensus 209 l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 209 LGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred cCCccCceEEEEECCCCcEEE
Confidence 999999999999999665554
No 269
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.19 E-value=4.3e-06 Score=65.90 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=33.6
Q ss_pred cccCCCc-EEEEEecCCCHhhHhhhHHH---HHHHHHhcCCCCEEEEEEeCCCC
Q 008845 15 LDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDED 64 (551)
Q Consensus 15 l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~vv~v~~d~~ 64 (551)
.+.-.|| ++|+|+++||++|+.+...+ .++.+.+.+ ++..+.|+.+..
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~ 63 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDE 63 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTH
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCC
Confidence 3444688 99999999999999997666 334443442 466777777543
No 270
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.16 E-value=8.6e-06 Score=77.24 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=64.3
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008845 336 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 415 (551)
Q Consensus 336 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 415 (551)
++.+++-|++||.+.|++|..+.|.|..+.+++ ++.|+.||+|.... ..+|... .+...++.+
T Consensus 140 ~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-----g~~v~~VS~DG~~~-----------p~fp~~~-~d~gqa~~l 202 (248)
T PRK13703 140 KLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-----GLSVIPVSVDGVIN-----------PLLPDSR-TDQGQAQRL 202 (248)
T ss_pred HHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCCc-cChhHHHhc
Confidence 344678899999999999999999999999998 48999999997531 2344332 223456899
Q ss_pred CCCCcceEEEECCCCcEEEc
Q 008845 416 KVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 416 ~v~~~P~~~lid~~G~i~~~ 435 (551)
+|..+|+++|++++.+-...
T Consensus 203 ~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 203 GVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred CCcccceEEEEECCCCcEEE
Confidence 99999999999998754443
No 271
>smart00594 UAS UAS domain.
Probab=98.10 E-value=1.7e-05 Score=67.60 Aligned_cols=69 Identities=16% Similarity=0.318 Sum_probs=49.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
.+|.++|+|+++||++|..+.... .++.+.+.. ++-++.++++... ...++..
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~e---------------------g~~l~~~ 81 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSE---------------------GQRVSQF 81 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChh---------------------HHHHHHh
Confidence 389999999999999999987753 222333332 2444444443322 2468999
Q ss_pred cCCCCcceEEEECCCC
Q 008845 415 FKVSGIPMLVAIGPSG 430 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G 430 (551)
|++.++|++++++++|
T Consensus 82 ~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 82 YKLDSFPYVAIVDPRT 97 (122)
T ss_pred cCcCCCCEEEEEecCC
Confidence 9999999999999997
No 272
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.10 E-value=2.1e-05 Score=72.91 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=85.9
Q ss_pred ccCceeecccCCCc-EEEEEecCCCH-hhHhhhHHHHHHHHHhcCCC--CEEEEEEeCCC---CHHHHHHHHhhCCCCcc
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGYFSKMPWLAV 80 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~~--~~~vv~v~~d~---~~~~~~~~~~~~~~~~~ 80 (551)
..|+.++-.++.|| +++||--+.|| .|..++..|.++.+++..+. .+.-++|++|. +.+.+.+|+++.....+
T Consensus 127 ~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkll 206 (280)
T KOG2792|consen 127 HDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLL 206 (280)
T ss_pred cCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhh
Confidence 47888999999999 99999999999 79999999999999987664 23368889885 77899999999876555
Q ss_pred ccCC-hhhHHHHHhhcCCCCCc---------------EEEEEcCCCeEEEc
Q 008845 81 PFSD-SETRDKLDELFKVMGIP---------------HLVILDENGKVLSD 115 (551)
Q Consensus 81 ~~~~-~~~~~~l~~~~~v~~~P---------------~~~lid~~G~i~~~ 115 (551)
-+.. .+....+++.|.|.--+ .++++|++|+.+..
T Consensus 207 GLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~ 257 (280)
T KOG2792|consen 207 GLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDY 257 (280)
T ss_pred cccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehh
Confidence 5543 33456788988875322 35889999998864
No 273
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.07 E-value=9e-06 Score=69.69 Aligned_cols=75 Identities=19% Similarity=0.375 Sum_probs=46.9
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh-
Q 008845 336 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK- 414 (551)
Q Consensus 336 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~- 414 (551)
.+..+..++.|..+|||.|+...|.|.++++..+ ++.+-.+..|.+.+ +...
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~e-----------------------l~~~~ 90 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKE-----------------------LMDQY 90 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHH-----------------------HTTTT
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChh-----------------------HHHHH
Confidence 3346788999999999999999999999988753 36666666654432 2222
Q ss_pred --cCCCCcceEEEECCCCcEEEccc
Q 008845 415 --FKVSGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 415 --~~v~~~P~~~lid~~G~i~~~~~ 437 (551)
.|.+.+|+++++|.+|+.+.+-+
T Consensus 91 lt~g~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 91 LTNGGRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp TT-SS--SSEEEEE-TT--EEEEEE
T ss_pred HhCCCeecCEEEEEcCCCCEeEEEc
Confidence 57889999999999999988743
No 274
>smart00594 UAS UAS domain.
Probab=98.07 E-value=2.1e-05 Score=67.16 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=50.9
Q ss_pred cccCCCc-EEEEEecCCCHhhHhhhHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHH
Q 008845 15 LDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 90 (551)
Q Consensus 15 l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (551)
.+.-++| ++|+|+++||++|+.+.... .++.+.+.. ++.++.+++..... ..
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg----------------------~~ 77 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEG----------------------QR 77 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhH----------------------HH
Confidence 3444688 99999999999999885532 223344432 34454555443322 46
Q ss_pred HHhhcCCCCCcEEEEEcCCC
Q 008845 91 LDELFKVMGIPHLVILDENG 110 (551)
Q Consensus 91 l~~~~~v~~~P~~~lid~~G 110 (551)
+++.|++.++|++++++++|
T Consensus 78 l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 78 VSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHhcCcCCCCEEEEEecCC
Confidence 88999999999999999887
No 275
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.04 E-value=2e-05 Score=65.94 Aligned_cols=65 Identities=40% Similarity=0.712 Sum_probs=50.9
Q ss_pred ccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 16 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 16 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
..+.++ +++.||++||++|+.++|.+.++++.+.. .+.++.++.. ... .+..
T Consensus 28 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~------------------------~~~~ 81 (127)
T COG0526 28 SELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENP------------------------DLAA 81 (127)
T ss_pred hhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCCh------------------------HHHH
Confidence 333477 99999999999999999999999999975 3678888775 232 3556
Q ss_pred hcC--CCCCcEEEEE
Q 008845 94 LFK--VMGIPHLVIL 106 (551)
Q Consensus 94 ~~~--v~~~P~~~li 106 (551)
.|+ +..+|++.++
T Consensus 82 ~~~~~~~~~p~~~~~ 96 (127)
T COG0526 82 EFGVAVRSIPTLLLF 96 (127)
T ss_pred HHhhhhccCCeEEEE
Confidence 677 7888988765
No 276
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.04 E-value=1.2e-05 Score=75.37 Aligned_cols=81 Identities=28% Similarity=0.357 Sum_probs=63.0
Q ss_pred cccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 15 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 15 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
+..+.++ -|++||.+.|++|+.+.|.+..+++++. +.|+.|++|.... .. +.+......+.+
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg----~~v~~vs~DG~~~-----------~~--fp~~~~~~g~~~ 177 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG----FSVIPVSLDGRPI-----------PS--FPNPRPDPGQAK 177 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC----CEEEEEecCCCCC-----------cC--CCCCCCCHHHHH
Confidence 5566677 8899999999999999999999999993 8999999996422 11 111111245888
Q ss_pred hcCCCCCcEEEEEcCCCeE
Q 008845 94 LFKVMGIPHLVILDENGKV 112 (551)
Q Consensus 94 ~~~v~~~P~~~lid~~G~i 112 (551)
+|+|..+|+++++++++..
T Consensus 178 ~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 178 RLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred HcCCCcCCEEEEEECCCCe
Confidence 9999999999999988733
No 277
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.03 E-value=1.9e-05 Score=66.10 Aligned_cols=67 Identities=39% Similarity=0.718 Sum_probs=52.7
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-CChHHHHHHHhcCCCcccccCchhhHHHH
Q 008845 334 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEFFKGMPWLALPFGDARKASLS 412 (551)
Q Consensus 334 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d-~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 412 (551)
...+.++++++.||++||++|+.+.|.+.++.+.+.. .+.++.+++. ... .+.
T Consensus 27 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~-----------------------~~~ 80 (127)
T COG0526 27 LSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENP-----------------------DLA 80 (127)
T ss_pred hhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCCh-----------------------HHH
Confidence 3333488999999999999999999999999999865 2678888775 232 466
Q ss_pred HhcC--CCCcceEEEE
Q 008845 413 RKFK--VSGIPMLVAI 426 (551)
Q Consensus 413 ~~~~--v~~~P~~~li 426 (551)
..|+ +..+|+++++
T Consensus 81 ~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 81 AEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHhhhhccCCeEEEE
Confidence 6777 8888988765
No 278
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.02 E-value=3.7e-05 Score=63.27 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=54.6
Q ss_pred ccee-cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC
Q 008845 322 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR 384 (551)
Q Consensus 322 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~ 384 (551)
+|.+ +.+|+.++++.++||++||.-.|+-|+.-. ....|++|+++|+.+ +++|++..++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehHH
Confidence 4666 899999999999999999999999999988 888999999999976 69999999863
No 279
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.02 E-value=0.0001 Score=80.09 Aligned_cols=178 Identities=17% Similarity=0.211 Sum_probs=99.4
Q ss_pred cCCcEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcC
Q 008845 177 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 256 (551)
Q Consensus 177 ~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~ 256 (551)
++.+..+.+|..+.|+.|.++...+.+++. +. +.+.+.+..... .+.+++.|+
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s---~~i~~~~~~~~~-----------------------~~~~~~~~~ 416 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFLGEFAS-LS---EKLNSEAVNRGE-----------------------EPESETLPK 416 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHHHHHHh-cC---CcEEEEEecccc-----------------------chhhHhhcC
Confidence 455555666766666667665555554442 22 223332332222 356788999
Q ss_pred cCCcceEEEECCCCCcccccchhhhhhcCCCCCCCChhhHHHHHHHHH-HHHhhhhhhhhhccCCccceecCCCCeeecc
Q 008845 257 LSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQR-AKEESQTLESVLVSGDLDFVVGKNGGKVPVS 335 (551)
Q Consensus 257 v~~~P~lvi~~~~gk~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~f~~~~~g~~v~l~ 335 (551)
++..|++++++.+|... .|..+|++. . ..+..|+..-. .....+.+.... .-.+.
T Consensus 417 v~~~P~~~i~~~~~~~~------~i~f~g~P~---G-~Ef~s~i~~i~~~~~~~~~l~~~~--------------~~~i~ 472 (555)
T TIGR03143 417 ITKLPTVALLDDDGNYT------GLKFHGVPS---G-HELNSFILALYNAAGPGQPLGEEL--------------LEKIK 472 (555)
T ss_pred CCcCCEEEEEeCCCccc------ceEEEecCc---c-HhHHHHHHHHHHhcCCCCCCCHHH--------------HHHHH
Confidence 99999999996554321 123333332 2 22233332111 110011110000 00123
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008845 336 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 415 (551)
Q Consensus 336 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 415 (551)
.+.++..+-.|.+++||.|......+++++.... ++..-.|.....+ ++++.|
T Consensus 473 ~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~~~-----------------------~~~~~~ 525 (555)
T TIGR03143 473 KITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSHFP-----------------------DLKDEY 525 (555)
T ss_pred hcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcccH-----------------------HHHHhC
Confidence 3445555667789999999987777776665543 3666666665444 688999
Q ss_pred CCCCcceEEEECCCCcEEEc
Q 008845 416 KVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 416 ~v~~~P~~~lid~~G~i~~~ 435 (551)
+|.++|++++ +|+++..
T Consensus 526 ~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 526 GIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred CceecCEEEE---CCEEEEe
Confidence 9999999987 4666654
No 280
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=4.5e-05 Score=66.20 Aligned_cols=138 Identities=17% Similarity=0.272 Sum_probs=105.9
Q ss_pred cCCccceecCCCCeeecccCCCCEEEEEEec--CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh--HH----H
Q 008845 318 SGDLDFVVGKNGGKVPVSDLAGKTILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ--TS----F 389 (551)
Q Consensus 318 ~~~~~f~~~~~g~~v~l~~~~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~--~~----~ 389 (551)
...|+|..+.+-..+.+.++.|.-..|.|.. ...|.|..++..+.+++.+|..+ ++..+++|+|.-. .. +
T Consensus 10 d~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR--nvKlialS~d~vesH~~Wi~DI 87 (224)
T KOG0854|consen 10 DTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR--NVKLIALSVDDVESHKDWIKDI 87 (224)
T ss_pred CcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc--CceEEEeehhhHHHHHHHHHHH
Confidence 4458898877778899999999888888885 46789999999999999999877 7999999998642 22 3
Q ss_pred HHHHhcCC-CcccccCchhhHHHHHhcCCC--------C----cceEEEECCCCcEEEcccchhhhhcCCCCCC-CCHHH
Q 008845 390 DEFFKGMP-WLALPFGDARKASLSRKFKVS--------G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYP-FTEER 455 (551)
Q Consensus 390 ~~~~~~~~-~~~~~~~~d~~~~l~~~~~v~--------~----~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p-~~~~~ 455 (551)
+.|.+..+ -+.+|+..|++.+++-.|+.- + ...+++||++.+++-... || -+++.
T Consensus 88 ks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~l-----------YP~ttGRN 156 (224)
T KOG0854|consen 88 KSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFL-----------YPSTTGRN 156 (224)
T ss_pred HHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEE-----------cccccCcC
Confidence 33433332 378899999999999888752 2 457899999999987632 23 46778
Q ss_pred HHHHHHHHHHHhc
Q 008845 456 MKEIDGQYNEMAK 468 (551)
Q Consensus 456 ~~~l~~~l~~~~~ 468 (551)
.++++..|++|.-
T Consensus 157 ~dEiLRvidsLql 169 (224)
T KOG0854|consen 157 FDEILRVIDSLQL 169 (224)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887653
No 281
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.00 E-value=3.1e-05 Score=56.90 Aligned_cols=63 Identities=30% Similarity=0.657 Sum_probs=48.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.||++||++|.+..+.+.++ . ... .++.++.++++...... .....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-A-LLN--KGVKFEAVDVDEDPALE--------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-H-hhC--CCcEEEEEEcCCChHHh--------------------hHHHhCCCccccE
Confidence 5789999999999999999987 2 222 35899999988664311 1135788999999
Q ss_pred EEEECCC
Q 008845 423 LVAIGPS 429 (551)
Q Consensus 423 ~~lid~~ 429 (551)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999766
No 282
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.00 E-value=9.5e-06 Score=69.55 Aligned_cols=74 Identities=32% Similarity=0.582 Sum_probs=46.0
Q ss_pred cccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 15 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 15 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
++.+..+ .++.|..+|||.|+...|.+.++++..+ ++++-.+..|++.+ +..
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~e------------------------l~~ 88 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKE------------------------LMD 88 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHH------------------------HTT
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChh------------------------HHH
Confidence 4555666 7888999999999999999999998864 46666666664443 222
Q ss_pred h---cCCCCCcEEEEEcCCCeEEEc
Q 008845 94 L---FKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 94 ~---~~v~~~P~~~lid~~G~i~~~ 115 (551)
. .+...+|+++++|.+|+.+..
T Consensus 89 ~~lt~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 89 QYLTNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp TTTT-SS--SSEEEEE-TT--EEEE
T ss_pred HHHhCCCeecCEEEEEcCCCCEeEE
Confidence 2 577899999999999988864
No 283
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.93 E-value=6.2e-05 Score=66.39 Aligned_cols=107 Identities=15% Similarity=0.297 Sum_probs=50.6
Q ss_pred CCEEEEEEecCCChhHHhhhHH-H--HHHHHHHhhcCCCeEEEEEeCCCCh-HHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 339 GKTILLYFSAHWCPPCRAFLPK-L--IDAYKKIKERNESLEVVFISSDRDQ-TSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~vv~vs~d~~~-~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
+|+|+|.++++||++|..+... + .++++.+.. .+|.|.+|++. .++...... .....
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-----~FI~VkvDree~Pdid~~y~~--------------~~~~~ 97 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-----NFIPVKVDREERPDIDKIYMN--------------AVQAM 97 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-----H-EEEEEETTT-HHHHHHHHH--------------HHHHH
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-----CEEEEEeccccCccHHHHHHH--------------HHHHh
Confidence 8999999999999999987753 2 223333433 24455555442 122111110 11122
Q ss_pred cCCCCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhccC
Q 008845 415 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 470 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~~~ 470 (551)
.|..|+|++++++|+|+.++... |-...-........++...|.++-...
T Consensus 98 ~~~gGwPl~vfltPdg~p~~~~t------Y~P~~~~~g~~~f~~~l~~i~~~w~~~ 147 (163)
T PF03190_consen 98 SGSGGWPLTVFLTPDGKPFFGGT------YFPPEDRYGRPGFLQLLERIAELWKEN 147 (163)
T ss_dssp HS---SSEEEEE-TTS-EEEEES------S--SS-BTTB--HHHHHHHHHHHHHHS
T ss_pred cCCCCCCceEEECCCCCeeeeee------ecCCCCCCCCccHHHHHHHHHHHHHHC
Confidence 37889999999999999988632 100000112335556666666554443
No 284
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=97.92 E-value=6.6e-06 Score=50.76 Aligned_cols=29 Identities=38% Similarity=0.900 Sum_probs=27.2
Q ss_pred eecCCCCCCCCce-eEecccCCCCcccccc
Q 008845 491 YSCDGCDEEGRVW-AFSCDECDFCLHPNCA 519 (551)
Q Consensus 491 ~~~~~c~~~g~~~-~~~~~~~~~~~~~~~~ 519 (551)
+.|+.|.+...+- .|+|.+|.|.||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 5799999999998 9999999999999997
No 285
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.91 E-value=0.00016 Score=78.54 Aligned_cols=174 Identities=15% Similarity=0.146 Sum_probs=104.1
Q ss_pred cccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 15 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 15 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
+..+++. .++.|+.+-|..|..+...|++++ ++.+ .+.+...+...+ ..+.+
T Consensus 361 ~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~--~i~~~~~~~~~~------------------------~~~~~ 413 (555)
T TIGR03143 361 FGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE--KLNSEAVNRGEE------------------------PESET 413 (555)
T ss_pred HHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCC--cEEEEEeccccc------------------------hhhHh
Confidence 3456777 777888888999998888888887 4443 466655554433 34778
Q ss_pred hcCCCCCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHHHHHHHHHhhcccccccccCCcceeecCCCce-e
Q 008845 94 LFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRK-I 172 (551)
Q Consensus 94 ~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~ 172 (551)
.|++...|++.+++.+|+-.. ++.+|.+.-+-....+..++.-. ...+.+ +.+. -
T Consensus 414 ~~~v~~~P~~~i~~~~~~~~~------i~f~g~P~G~Ef~s~i~~i~~~~---~~~~~l---------------~~~~~~ 469 (555)
T TIGR03143 414 LPKITKLPTVALLDDDGNYTG------LKFHGVPSGHELNSFILALYNAA---GPGQPL---------------GEELLE 469 (555)
T ss_pred hcCCCcCCEEEEEeCCCcccc------eEEEecCccHhHHHHHHHHHHhc---CCCCCC---------------CHHHHH
Confidence 999999999999976654211 23455544222222222222110 000000 0000 0
Q ss_pred eccccCCcEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHH
Q 008845 173 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 252 (551)
Q Consensus 173 ~~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~ 252 (551)
.+..++++.....|..++||.|......+.+++... .++..-.+.... ++.++
T Consensus 470 ~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~----~~i~~~~i~~~~-----------------------~~~~~ 522 (555)
T TIGR03143 470 KIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN----PNVEAEMIDVSH-----------------------FPDLK 522 (555)
T ss_pred HHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC----CCceEEEEECcc-----------------------cHHHH
Confidence 111235555566789999999997777666666542 233333333332 56788
Q ss_pred hhcCcCCcceEEEE
Q 008845 253 RYFELSTLPTLVII 266 (551)
Q Consensus 253 ~~f~v~~~P~lvi~ 266 (551)
+.|+|..+|++++=
T Consensus 523 ~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 523 DEYGIMSVPAIVVD 536 (555)
T ss_pred HhCCceecCEEEEC
Confidence 99999999999874
No 286
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0001 Score=63.08 Aligned_cols=105 Identities=23% Similarity=0.263 Sum_probs=75.4
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHHhhCCCCc
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYFSKMPWLA 79 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~~~~~~~ 79 (551)
.+|+.++|++++|| +||.--|+-|+.-. .-..|+.++++|+++| +.|+...++ .+.+++.+|....--..
T Consensus 13 ~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G-f~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVt 90 (162)
T COG0386 13 IDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG-FEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVT 90 (162)
T ss_pred cCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC-cEEEeccccccccCCCCCHHHHHHHHHhccCce
Confidence 47899999999999 88889999999776 5678999999999997 999999876 36788999987654333
Q ss_pred cccC------ChhhHHHHHhhcC--------CCCC---cEEEEEcCCCeEEEc
Q 008845 80 VPFS------DSETRDKLDELFK--------VMGI---PHLVILDENGKVLSD 115 (551)
Q Consensus 80 ~~~~------~~~~~~~l~~~~~--------v~~~---P~~~lid~~G~i~~~ 115 (551)
+|.. .... .-|.+.+. ...+ =+-+++|++|+++.+
T Consensus 91 Fp~f~Ki~VnG~~a-~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~R 142 (162)
T COG0386 91 FPMFSKIDVNGKNA-HPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKR 142 (162)
T ss_pred eeeeeEEeecCCCC-CcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEe
Confidence 3321 1111 12332221 1222 244999999999986
No 287
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.87 E-value=8e-05 Score=54.58 Aligned_cols=63 Identities=33% Similarity=0.530 Sum_probs=47.8
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.||++||++|+...+.+.++ . .... ++.++.++++...... .....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-A-LLNK-GVKFEAVDVDEDPALE---------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-H-hhCC-CcEEEEEEcCCChHHh---------------------hHHHhCCCccccE
Confidence 5789999999999999999998 3 2222 5889999888665411 1125689999999
Q ss_pred EEEEcCC
Q 008845 103 LVILDEN 109 (551)
Q Consensus 103 ~~lid~~ 109 (551)
+++++.+
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999654
No 288
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00012 Score=62.55 Aligned_cols=84 Identities=25% Similarity=0.473 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHH---HHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCc----hhhHH
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD----ARKAS 410 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~----d~~~~ 410 (551)
.+|+.++.|-.+.|+.|.++-..+. ++.+.+++. +.++.+.+..... ..+-.+. -...+
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skp-----------v~f~~g~kee~~s~~E 106 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKP-----------VLFKVGDKEEKMSTEE 106 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcc-----------eEeecCceeeeecHHH
Confidence 4899999999999999999877653 445555554 6777776643321 1111111 12458
Q ss_pred HHHhcCCCCcceEEEECCCCcEEEc
Q 008845 411 LSRKFKVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 411 l~~~~~v~~~P~~~lid~~G~i~~~ 435 (551)
|++.|+|+++|+++++|++|+.+..
T Consensus 107 La~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 107 LAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHHhccccCceEEEEcCCCCEEEe
Confidence 9999999999999999999998876
No 289
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.81 E-value=0.0001 Score=61.64 Aligned_cols=77 Identities=27% Similarity=0.613 Sum_probs=49.5
Q ss_pred CCEEEEEEec-------CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHH
Q 008845 339 GKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 411 (551)
Q Consensus 339 gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l 411 (551)
+++++|+|++ +|||.|++..|.+++......+ +..+|.+.+... ..|+ ++++..
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r-~~Wk---------------dp~n~f 79 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDR-PEWK---------------DPNNPF 79 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---H-HHHC----------------TTSHH
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCH-HHhC---------------CCCCCc
Confidence 6788888884 4999999999999988777544 378888887532 3332 222344
Q ss_pred HH--hcCCCCcceEEEECCCCcEEE
Q 008845 412 SR--KFKVSGIPMLVAIGPSGRTIT 434 (551)
Q Consensus 412 ~~--~~~v~~~P~~~lid~~G~i~~ 434 (551)
.. .++++++||++-++..++++.
T Consensus 80 R~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp HH--CC---SSSEEEECTSS-EEEH
T ss_pred eEcceeeeeecceEEEECCCCccch
Confidence 44 699999999999977655443
No 290
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.81 E-value=5.6e-05 Score=72.21 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=63.6
Q ss_pred ecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHH
Q 008845 14 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 92 (551)
Q Consensus 14 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (551)
.++.+.++ -|++||.+-|++|..+.|.+..+++++. +.|+.||+|.... ..++-. .....++
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg----i~v~~VS~DG~~~-----------p~fp~~--~~d~gqa 206 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG----ISVIPISVDGTLI-----------PGLPNS--RSDSGQA 206 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCC-----------CCCCCc--cCChHHH
Confidence 35566677 8999999999999999999999999994 8999999996522 111111 1113578
Q ss_pred hhcCCCCCcEEEEEcCCCeEE
Q 008845 93 ELFKVMGIPHLVILDENGKVL 113 (551)
Q Consensus 93 ~~~~v~~~P~~~lid~~G~i~ 113 (551)
+.+++..+|++++++++.+..
T Consensus 207 ~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 207 QHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhcCCccCceEEEEECCCCcE
Confidence 899999999999999885433
No 291
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.76 E-value=4.1e-05 Score=79.85 Aligned_cols=77 Identities=19% Similarity=0.394 Sum_probs=55.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHH-HHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLI-DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 416 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 416 (551)
++|+|+|+|||.||-.|+.+.+..- +.....+ ..++..+-+++..+.. ...++.++|+
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~--~~~~vlLqaDvT~~~p-------------------~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA--LQDVVLLQADVTANDP-------------------AITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh--cCCeEEEEeeecCCCH-------------------HHHHHHHHcC
Confidence 4569999999999999999988754 2222222 2345666655544322 2346788999
Q ss_pred CCCcceEEEECCCCcEEEc
Q 008845 417 VSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 417 v~~~P~~~lid~~G~i~~~ 435 (551)
+-+.|++++++++|+-...
T Consensus 532 ~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred CCCCCEEEEECCCCCcCcC
Confidence 9999999999999976544
No 292
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.75 E-value=0.00022 Score=54.37 Aligned_cols=59 Identities=19% Similarity=0.539 Sum_probs=43.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
+..|+++||++|+...+.|.+ . ++.+..++++.++.. ..++.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~--~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K--GIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C--CCeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 467999999999998877654 1 367777888765431 124677889999999
Q ss_pred EEEECCCCcE
Q 008845 423 LVAIGPSGRT 432 (551)
Q Consensus 423 ~~lid~~G~i 432 (551)
+++- |++
T Consensus 54 ~~~~---~~~ 60 (74)
T TIGR02196 54 IVIG---HKI 60 (74)
T ss_pred EEEC---CEE
Confidence 9873 555
No 293
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.74 E-value=5.7e-05 Score=71.73 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=61.2
Q ss_pred cccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 15 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 15 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
++++.++ -|++||.+.|++|..+.|.+..+++++. +.|+.||+|.... ..++-.-.+ ....+
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg----~~v~~VS~DG~~~-----------p~fp~~~~d--~gqa~ 200 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG----LSVIPVSVDGVIN-----------PLLPDSRTD--QGQAQ 200 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCC-----------CCCCCCccC--hhHHH
Confidence 5566667 8999999999999999999999999984 8899999996421 112211111 34568
Q ss_pred hcCCCCCcEEEEEcCCC
Q 008845 94 LFKVMGIPHLVILDENG 110 (551)
Q Consensus 94 ~~~v~~~P~~~lid~~G 110 (551)
.+++..+|++++++++.
T Consensus 201 ~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 201 RLGVKYFPALMLVDPKS 217 (248)
T ss_pred hcCCcccceEEEEECCC
Confidence 89999999999999875
No 294
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.74 E-value=0.0002 Score=54.63 Aligned_cols=55 Identities=22% Similarity=0.549 Sum_probs=41.3
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
+..|+++||++|+...+.|.+ . ++.+..++++.+.+. ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~-~i~~~~vdi~~~~~~--------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K-GIAFEEIDVEKDSAA--------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C-CCeEEEEeccCCHHH--------------------HHHHHHHhCCCcccE
Confidence 467999999999998887764 1 367778888765441 134667889999999
Q ss_pred EEE
Q 008845 103 LVI 105 (551)
Q Consensus 103 ~~l 105 (551)
+++
T Consensus 54 ~~~ 56 (74)
T TIGR02196 54 IVI 56 (74)
T ss_pred EEE
Confidence 876
No 295
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.73 E-value=0.0014 Score=60.03 Aligned_cols=171 Identities=21% Similarity=0.349 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcEEEEEcC-CCeEEEc
Q 008845 37 FTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE-NGKVLSD 115 (551)
Q Consensus 37 ~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~-~G~i~~~ 115 (551)
+...+.++++.+... +.++.+. + ..+++.+++.. |+++++.+ +++.+..
T Consensus 8 ~~~~f~~~A~~~~~~--~~F~~~~---~------------------------~~~~~~~~~~~-p~i~~~k~~~~~~~~y 57 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGD--YQFGVTF---N------------------------EELAKKYGIKE-PTIVVYKKFDEKPVVY 57 (184)
T ss_dssp HHHHHHHHHHHHTTT--SEEEEEE----------------------------HHHHHHCTCSS-SEEEEEECTTTSEEEE
T ss_pred HHHHHHHHHHhCcCC--cEEEEEc---H------------------------HHHHHHhCCCC-CcEEEeccCCCCceec
Confidence 456778888888743 4444433 2 24788899999 99999965 2333332
Q ss_pred CcchhhhhcCCCCCCchHHHHHHHHHHHHHHHhhcccccccccCCcceeecCCCceeeccccCCcE-EEEEEecCCCccc
Q 008845 116 GGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT-IGLYFSMSSYKAS 194 (551)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~gk~-v~l~f~~~~~~~c 194 (551)
.+. .++.+.|..++.. ...+.+...+.+.+......+.. ++++|........
T Consensus 58 ~~~-----------~~~~~~l~~fI~~----------------~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~ 110 (184)
T PF13848_consen 58 DGD-----------KFTPEELKKFIKK----------------NSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNEST 110 (184)
T ss_dssp SSS-----------TTSHHHHHHHHHH----------------HSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHH
T ss_pred ccc-----------cCCHHHHHHHHHH----------------hccccccccchhhHHHHhcCCCceEEEEEEcCCchhH
Confidence 111 2455666665533 23333433333333332224444 6676766555666
Q ss_pred hhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCcC--CcceEEEECCCC-C
Q 008845 195 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--TLPTLVIIGPDG-K 271 (551)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v~--~~P~lvi~~~~g-k 271 (551)
..+...+..++.+++++ +.|+.+|.+. ..++++.||++ .+|++++++... +
T Consensus 111 ~~~~~~l~~~a~~~~~~-----~~f~~~d~~~---------------------~~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 111 EAFKKELQDIAKKFKGK-----INFVYVDADD---------------------FPRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp HHHHHHHHHHHHCTTTT-----SEEEEEETTT---------------------THHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred HHHHHHHHHHHHhcCCe-----EEEEEeehHH---------------------hHHHHHHcCCCCccCCEEEEEECCCCc
Confidence 77777788888887765 5666666653 45688899998 799999998543 3
Q ss_pred cccccchhhhhhcCCCCCCCChhhHHHHHH
Q 008845 272 TLHSNVAEAIEEHGVGAFPFTPEKFAELAE 301 (551)
Q Consensus 272 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 301 (551)
+.... .-+++.+.+.+|++
T Consensus 165 ~~~~~-----------~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 165 YYYLP-----------EGEITPESIEKFLN 183 (184)
T ss_dssp EEE-------------SSCGCHHHHHHHHH
T ss_pred EEcCC-----------CCCCCHHHHHHHhc
Confidence 21111 11568888888875
No 296
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.70 E-value=0.00016 Score=55.86 Aligned_cols=63 Identities=22% Similarity=0.472 Sum_probs=41.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhh-cCCCCCc
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL-FKVMGIP 101 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~P 101 (551)
++.||++||++|+...+.|.++. +++-.++++.+.... ..+.+. +++.++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~--------------------~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAA--------------------DRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHH--------------------HHHHHHhCCCceeC
Confidence 56799999999999988876542 344456776554310 122222 4888999
Q ss_pred EEEEEcCCCeEEEc
Q 008845 102 HLVILDENGKVLSD 115 (551)
Q Consensus 102 ~~~lid~~G~i~~~ 115 (551)
++ ++ .+|+++..
T Consensus 54 ~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 54 TV-KF-ADGSFLTN 65 (77)
T ss_pred EE-EE-CCCeEecC
Confidence 86 45 46777654
No 297
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00042 Score=60.22 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=75.4
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHHhhCCCCc
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYFSKMPWLA 79 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~~~~~~~ 79 (551)
.+|+.|+++.++|| +||.--||.|+.-...-..|+.++++|++.| +.|++..++ .+.+++..++....-..
T Consensus 22 ~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G-l~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~ 100 (171)
T KOG1651|consen 22 LDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG-LEILAFPCNQFGNQEPGSNEEILNFVKVRYGAE 100 (171)
T ss_pred CCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC-eEEEEeccccccCcCCCCcHHHHHHHHhccCCC
Confidence 47899999999999 8888899999998877889999999999986 999998876 24567778876433222
Q ss_pred cccC-----ChhhHHHHHhhcCCC-------CCc---EEEEEcCCCeEEEc
Q 008845 80 VPFS-----DSETRDKLDELFKVM-------GIP---HLVILDENGKVLSD 115 (551)
Q Consensus 80 ~~~~-----~~~~~~~l~~~~~v~-------~~P---~~~lid~~G~i~~~ 115 (551)
+++. ..+....+.+.++-. .|. +-+++|++|.++.+
T Consensus 101 f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~R 151 (171)
T KOG1651|consen 101 FPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKR 151 (171)
T ss_pred CccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEe
Confidence 2211 111112344433221 232 33899999999986
No 298
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.63 E-value=0.0002 Score=56.38 Aligned_cols=65 Identities=26% Similarity=0.498 Sum_probs=45.0
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|+++|||+|+...+.|.++. +. +.+.++-|+.+.+...+.+ .+.+.+++.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~-------------------~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQD-------------------YLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHH-------------------HHHHHhCCCCCCe
Confidence 46799999999999999998875 22 1366777666544432222 3666789999999
Q ss_pred EEEEcCCCeEE
Q 008845 103 LVILDENGKVL 113 (551)
Q Consensus 103 ~~lid~~G~i~ 113 (551)
+++ +|+.+
T Consensus 58 v~i---~g~~i 65 (84)
T TIGR02180 58 IFI---NGKFI 65 (84)
T ss_pred EEE---CCEEE
Confidence 754 45544
No 299
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.60 E-value=0.00031 Score=54.25 Aligned_cols=63 Identities=13% Similarity=0.336 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH-hcCCCCcc
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFKVSGIP 421 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~v~~~P 421 (551)
+..||++||++|++..+.|.++. +.+-.++++.++.. ...+.+ .+++.++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcCCHhH-------------------HHHHHHHhCCCceeC
Confidence 56799999999999998775431 33445667655421 011222 25889999
Q ss_pred eEEEECCCCcEEEc
Q 008845 422 MLVAIGPSGRTITK 435 (551)
Q Consensus 422 ~~~lid~~G~i~~~ 435 (551)
++ ++ .+|+++..
T Consensus 54 ~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 54 TV-KF-ADGSFLTN 65 (77)
T ss_pred EE-EE-CCCeEecC
Confidence 86 45 46777665
No 300
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.59 E-value=0.0001 Score=76.90 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=55.4
Q ss_pred ccCCCc-EEEEEecCCCHhhHhhhHHHH-HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 16 DSLKGK-IGLYFSASWCGPCQRFTPILA-EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 16 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~-~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
++-++| |+|+|||.||-.||.+.+..- +.....+-. ++..+.++...+... ..++.+
T Consensus 470 a~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~--------------------~~~lLk 528 (569)
T COG4232 470 AEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPA--------------------ITALLK 528 (569)
T ss_pred HhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHH--------------------HHHHHH
Confidence 444678 999999999999999877543 333333333 566777666654331 245778
Q ss_pred hcCCCCCcEEEEEcCCCeEE
Q 008845 94 LFKVMGIPHLVILDENGKVL 113 (551)
Q Consensus 94 ~~~v~~~P~~~lid~~G~i~ 113 (551)
+|++.+.|++++++++|+..
T Consensus 529 ~~~~~G~P~~~ff~~~g~e~ 548 (569)
T COG4232 529 RLGVFGVPTYLFFGPQGSEP 548 (569)
T ss_pred HcCCCCCCEEEEECCCCCcC
Confidence 99999999999999888544
No 301
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.59 E-value=0.00017 Score=56.87 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=44.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|+++|||+|++..+.|.++. +.. .+.++.|+.+.+..... ..+.+.+++..+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~------------------~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQ------------------DYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 46799999999999999988764 322 26777777664433222 23666778999999
Q ss_pred EEEECCCCcEE
Q 008845 423 LVAIGPSGRTI 433 (551)
Q Consensus 423 ~~lid~~G~i~ 433 (551)
+++ +|+.+
T Consensus 58 v~i---~g~~i 65 (84)
T TIGR02180 58 IFI---NGKFI 65 (84)
T ss_pred EEE---CCEEE
Confidence 854 45544
No 302
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.58 E-value=0.0013 Score=63.62 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=56.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC---CCC-------------h-HHHHHHHhcCCCcc
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS---DRD-------------Q-TSFDEFFKGMPWLA 400 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~---d~~-------------~-~~~~~~~~~~~~~~ 400 (551)
.++.+++.|..+.||+|+++.+.+.++.+. + +++|..+.+ ..+ + ..+..+...+....
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 378999999999999999999988765443 1 244444432 111 1 11122221111100
Q ss_pred c-cc---------CchhhHHHHHhcCCCCcceEEEECCCCcEEEc
Q 008845 401 L-PF---------GDARKASLSRKFKVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 401 ~-~~---------~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 435 (551)
+ +. ..+.+..+.+.+||+|+|++|+.|.+|.+...
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 0 11 11234468889999999999999999986443
No 303
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.57 E-value=0.00077 Score=57.44 Aligned_cols=89 Identities=9% Similarity=0.123 Sum_probs=62.9
Q ss_pred EEEEEEec--CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 341 TILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 341 ~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
..+|.|-. ..+|-+....-.|.++.++|.+. ++.++.|++|.++ .++..|||+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~~~-----------------------~LA~~fgV~ 90 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQSE-----------------------AIGDRFGVF 90 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC--ceEEEEEECCCCH-----------------------HHHHHcCCc
Confidence 34444442 24555666777788888888632 3788888888775 699999999
Q ss_pred CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhcc
Q 008845 419 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 469 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~~ 469 (551)
++||++++ ++|+.+.+..+- ..-+++.+.|++++..
T Consensus 91 siPTLl~F-kdGk~v~~i~G~--------------~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 91 RFPATLVF-TGGNYRGVLNGI--------------HPWAELINLMRGLVEP 126 (132)
T ss_pred cCCEEEEE-ECCEEEEEEeCc--------------CCHHHHHHHHHHHhcC
Confidence 99999999 899999874321 1115577777777664
No 304
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00033 Score=60.41 Aligned_cols=99 Identities=25% Similarity=0.326 Sum_probs=77.4
Q ss_pred ccCceeecccCCCc--EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCC
Q 008845 8 ELLLRVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 84 (551)
Q Consensus 8 ~~~~~v~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
++|+.++|.++.|+ |+++|| +.--|-|-++.=.++.-|++++..+ .+|++++.| +..+.+.|..++++++..++|
T Consensus 77 edg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~-aeV~GlS~D-~s~sqKaF~sKqnlPYhLLSD 154 (211)
T KOG0855|consen 77 EDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG-AEVIGLSGD-DSASQKAFASKQNLPYHLLSD 154 (211)
T ss_pred CCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC-ceEEeeccC-chHHHHHhhhhccCCeeeecC
Confidence 68889999999887 777777 4455778888778888888888764 889999999 456788888899988888888
Q ss_pred hhhHHHHHhhcCCCCCc-------EEEEEcCCC
Q 008845 85 SETRDKLDELFKVMGIP-------HLVILDENG 110 (551)
Q Consensus 85 ~~~~~~l~~~~~v~~~P-------~~~lid~~G 110 (551)
... ++.+.+|+...| ..++++++|
T Consensus 155 pk~--e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 155 PKN--EVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred cch--hHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 774 688888887644 457776665
No 305
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00039 Score=59.53 Aligned_cols=92 Identities=23% Similarity=0.372 Sum_probs=62.6
Q ss_pred ceeecccCCCc-EEEEEecCCCHhhHhhhHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCCh-
Q 008845 11 LRVKLDSLKGK-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS- 85 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~- 85 (551)
+..++....+| .++.|-++.|++|.++...+. ++.+-+.. .+.++.++...+.. ..+...+.
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skp-----------v~f~~g~ke 99 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKP-----------VLFKVGDKE 99 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcc-----------eEeecCcee
Confidence 44456677889 999999999999998865543 34444443 46777776654322 00011111
Q ss_pred --hhHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 86 --ETRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 86 --~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
....+|++.|+++++|+++++|++|+.+..
T Consensus 100 e~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 100 EKMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred eeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 122579999999999999999999987764
No 306
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.47 E-value=0.00043 Score=64.47 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=80.4
Q ss_pred ccCCcccee-cCCCCe-eecccCC--CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC--------
Q 008845 317 VSGDLDFVV-GKNGGK-VPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------- 384 (551)
Q Consensus 317 ~~~~~~f~~-~~~g~~-v~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~-------- 384 (551)
...+||..+ +.+|+. ..+.|+. ++|+||+|.+-.||+-+.-++.++++.++|.+. ..++.|.+..
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI~EAHpsDgW~ 152 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYIEEAHPSDGWA 152 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhHhhhCcCCCcc
Confidence 345688866 889988 8888884 589999999999999999999999999999874 3444443321
Q ss_pred ------------Ch-H--HHHHHHhcCCCcccccCch-hhHHHHHhcCCCCcceEEEECCCCcEEEcccchh
Q 008845 385 ------------DQ-T--SFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 440 (551)
Q Consensus 385 ------------~~-~--~~~~~~~~~~~~~~~~~~d-~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 440 (551)
+. + ...+.+.+.. ...|+..| -++...+.||+..- .++|| .+|+|++.++.++
T Consensus 153 ~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg~GP 221 (237)
T PF00837_consen 153 FGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGGPGP 221 (237)
T ss_pred CCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCCCCC
Confidence 10 1 1112222222 45666544 46677888885432 35556 6999999977554
No 307
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00016 Score=65.24 Aligned_cols=88 Identities=20% Similarity=0.373 Sum_probs=62.9
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC---
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--- 98 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--- 98 (551)
++|.|||.|.+-|++..|.+.++..+|...+ +.+..|++..-.+ .+.+|+|.
T Consensus 147 WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~-lkFGkvDiGrfpd------------------------~a~kfris~s~ 201 (265)
T KOG0914|consen 147 WLIEFFACWSPKCVRFSPVFAELSIKYNNNL-LKFGKVDIGRFPD------------------------VAAKFRISLSP 201 (265)
T ss_pred EEEEEEeecChhhcccccccHHHHHHhCCCC-CcccceeeccCcC------------------------hHHheeeccCc
Confidence 9999999999999999999999999998764 7777777775433 45667664
Q ss_pred ---CCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHH
Q 008845 99 ---GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERI 136 (551)
Q Consensus 99 ---~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i 136 (551)
..||++++ ++|+-+.+...-.. +-....++++++.+
T Consensus 202 ~srQLPT~ilF-q~gkE~~RrP~vd~-~gra~s~~fSeenv 240 (265)
T KOG0914|consen 202 GSRQLPTYILF-QKGKEVSRRPDVDV-KGRAVSFPFSEENV 240 (265)
T ss_pred ccccCCeEEEE-ccchhhhcCccccc-cCCcccccccHHHH
Confidence 57999999 77877665322111 11234456665543
No 308
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00023 Score=64.26 Aligned_cols=91 Identities=25% Similarity=0.486 Sum_probs=70.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
.+..+|.|+|.|.+.|+...|.+.++..+|... .+.+-.|++.+-+ ..+.+|+|+
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~--~lkFGkvDiGrfp-----------------------d~a~kfris 198 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN--LLKFGKVDIGRFP-----------------------DVAAKFRIS 198 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCC--CCcccceeeccCc-----------------------ChHHheeec
Confidence 568999999999999999999999999999754 4677777776654 356677764
Q ss_pred ------CcceEEEECCCCcEEEcccchhhhhc-CCCCCCCCHHHHH
Q 008845 419 ------GIPMLVAIGPSGRTITKEARDMIAVH-GAEAYPFTEERMK 457 (551)
Q Consensus 419 ------~~P~~~lid~~G~i~~~~~~~~~~~~-g~~~~p~~~~~~~ 457 (551)
..||++++ .+|+-+.+ +..+..- .+..+||+++.+-
T Consensus 199 ~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv~ 241 (265)
T KOG0914|consen 199 LSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENVC 241 (265)
T ss_pred cCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHHH
Confidence 68999999 78888776 3344444 3567889888764
No 309
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00013 Score=66.66 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=79.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
+++.++++||++||.+|..+...+..+.+.++ +++++.+..+..+ +++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~-----------------------eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFP-----------------------EISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhh-----------------------HHHHHHHH
Confidence 58899999999999999999999988888772 2566655554433 68888999
Q ss_pred CCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHH-HHhccCCc---------------ccccCCcce
Q 008845 418 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN-EMAKGWPE---------------NVKHALHEH 481 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~-~~~~~~~~---------------~~~~~~~~~ 481 (551)
.+.|+++++ ..|..+.+-.+.+. ++.-..++.+..... ....+... .+....+.+
T Consensus 69 ~~vp~~~~~-~~~~~v~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~ 139 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVDRLSGADP--------PFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAK 139 (227)
T ss_pred hcCceeeee-ecchhhhhhhccCc--------HHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccC
Confidence 999999888 66666655221110 111112222221111 00000111 112234588
Q ss_pred eeeeecCCceecCCCCC
Q 008845 482 ELVLDRCGVYSCDGCDE 498 (551)
Q Consensus 482 ~~~l~~~~~~~~~~c~~ 498 (551)
++++.|+|.+..+.|+.
T Consensus 140 ~v~lFmKG~p~~P~CGF 156 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGF 156 (227)
T ss_pred eEEEEecCCCCcccccc
Confidence 99999999999999875
No 310
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.34 E-value=0.00088 Score=59.18 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=43.5
Q ss_pred ecccCCCc-EEEEEecCCCHhhHhhhHH-H--HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHH
Q 008845 14 KLDSLKGK-IGLYFSASWCGPCQRFTPI-L--AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 89 (551)
Q Consensus 14 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~-l--~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (551)
..+.-.+| ++|.++++||..|+.+..+ + .++++.+.+ ++.-|.|+.++.++ +..... .
T Consensus 31 ~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pd-id~~y~---------------~ 92 (163)
T PF03190_consen 31 EKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPD-IDKIYM---------------N 92 (163)
T ss_dssp HHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HH-HHHHHH---------------H
T ss_pred HHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCcc-HHHHHH---------------H
Confidence 34444688 9999999999999988642 2 234444443 24444455444333 111110 0
Q ss_pred HHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 90 KLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 90 ~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
......+..|.|++++++++|+.+..
T Consensus 93 ~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 93 AVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp HHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred HHHHhcCCCCCCceEEECCCCCeeee
Confidence 11122378899999999999999874
No 311
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00067 Score=59.26 Aligned_cols=103 Identities=23% Similarity=0.326 Sum_probs=75.3
Q ss_pred CceeecccCCCc-EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCC--HHHHHHHHhhCCCC---cccc
Q 008845 10 LLRVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEAFKGYFSKMPWL---AVPF 82 (551)
Q Consensus 10 ~~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~--~~~~~~~~~~~~~~---~~~~ 82 (551)
-+.++|++++|| |++.|| ..+--.|..+.-.+...+.++++. +-+|+++++|.. .-.|...-.+.+-+ .+|+
T Consensus 23 f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~-n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPl 101 (196)
T KOG0852|consen 23 FKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL-NTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPL 101 (196)
T ss_pred ceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc-CCeEEEEeccchhhhhhHhcCchhhCCcCccccce
Confidence 357899999999 888888 456668999999999999999877 489999999942 23333333444422 2443
Q ss_pred -CChhhHHHHHhhcCCC------CCcEEEEEcCCCeEEEc
Q 008845 83 -SDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 115 (551)
Q Consensus 83 -~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 115 (551)
+|.. .++++.||+. .+-.+++||++|.++..
T Consensus 102 lsD~~--~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 102 LSDLN--HEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred eeccc--hhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 3433 5799999984 35677999999988763
No 312
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.22 E-value=0.0044 Score=47.80 Aligned_cols=60 Identities=32% Similarity=0.528 Sum_probs=42.6
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcEE
Q 008845 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 103 (551)
Q Consensus 24 v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 103 (551)
|.+++++|++|......++++...+. +.+-.+.. .+. .++ ..|++.++|++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~-~~~-----------------------~~~-~~ygv~~vPal 53 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDI-EDF-----------------------EEI-EKYGVMSVPAL 53 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEET-TTH-----------------------HHH-HHTT-SSSSEE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEc-cCH-----------------------HHH-HHcCCCCCCEE
Confidence 34478889999999999999988873 44444444 232 245 88999999999
Q ss_pred EEEcCCCeEEEc
Q 008845 104 VILDENGKVLSD 115 (551)
Q Consensus 104 ~lid~~G~i~~~ 115 (551)
++ ||+++..
T Consensus 54 -vI--ng~~~~~ 62 (76)
T PF13192_consen 54 -VI--NGKVVFV 62 (76)
T ss_dssp -EE--TTEEEEE
T ss_pred -EE--CCEEEEE
Confidence 55 5887763
No 313
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.21 E-value=0.0017 Score=54.44 Aligned_cols=76 Identities=22% Similarity=0.568 Sum_probs=46.8
Q ss_pred CCc-EEEEEec-------CCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHH
Q 008845 19 KGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 90 (551)
Q Consensus 19 ~gk-vlv~F~a-------~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (551)
.|+ ++|+|++ +|||.|+...|.+.++.....+ +..++.+.+. ++..|+.- + ..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG-~r~~Wkdp------------~----n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVG-DRPEWKDP------------N----NP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE----HHHHC-T------------T----SH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcC-CHHHhCCC------------C----CC
Confidence 456 8888885 5999999999999999888554 4677777766 33333220 0 12
Q ss_pred HHh--hcCCCCCcEEEEEcCCCeEE
Q 008845 91 LDE--LFKVMGIPHLVILDENGKVL 113 (551)
Q Consensus 91 l~~--~~~v~~~P~~~lid~~G~i~ 113 (551)
... .+++.++||++-++..+++.
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~rL~ 103 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGERLV 103 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-EEE
T ss_pred ceEcceeeeeecceEEEECCCCccc
Confidence 333 69999999999996554433
No 314
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.20 E-value=0.0044 Score=47.81 Aligned_cols=59 Identities=27% Similarity=0.495 Sum_probs=41.7
Q ss_pred EecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcceEEE
Q 008845 346 FSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVA 425 (551)
Q Consensus 346 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~~l 425 (551)
+++++|+.|......++++...+. +.+-.+.+ .+. .++ ..|||.++|+++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~-~~~----------------------~~~-~~ygv~~vPalv- 54 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI-EDF----------------------EEI-EKYGVMSVPALV- 54 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET-TTH----------------------HHH-HHTT-SSSSEEE-
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc-cCH----------------------HHH-HHcCCCCCCEEE-
Confidence 367889999999988888877763 34444444 232 245 899999999995
Q ss_pred ECCCCcEEEcc
Q 008845 426 IGPSGRTITKE 436 (551)
Q Consensus 426 id~~G~i~~~~ 436 (551)
| ||+++..+
T Consensus 55 I--ng~~~~~G 63 (76)
T PF13192_consen 55 I--NGKVVFVG 63 (76)
T ss_dssp E--TTEEEEES
T ss_pred E--CCEEEEEe
Confidence 4 58888763
No 315
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.16 E-value=0.0044 Score=57.68 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=57.0
Q ss_pred CceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC---CH-------------HHHHHHH
Q 008845 10 LLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DD-------------EAFKGYF 72 (551)
Q Consensus 10 ~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~---~~-------------~~~~~~~ 72 (551)
...+....-.++ .++.|..+.||+|+++.+.+.+ ....-.+.++.+.... +. +.+.++.
T Consensus 67 ~~~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~ 142 (197)
T cd03020 67 DDAIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAM 142 (197)
T ss_pred ccCeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHH
Confidence 345555555577 8899999999999999998877 1211134444443322 11 2233333
Q ss_pred hhCCCC-ccc--cCChhhHHHHHhhcCCCCCcEEEEEcCCCeEE
Q 008845 73 SKMPWL-AVP--FSDSETRDKLDELFKVMGIPHLVILDENGKVL 113 (551)
Q Consensus 73 ~~~~~~-~~~--~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 113 (551)
...... ... ...-.....+++.++++++|+++ + .+|+.+
T Consensus 143 ~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 143 SGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred hCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 222110 111 12223345788999999999997 5 567664
No 316
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.10 E-value=0.0017 Score=54.62 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=51.6
Q ss_pred ecccCCCc-EEEEEecC----CCHhhHhh--hHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChh
Q 008845 14 KLDSLKGK-IGLYFSAS----WCGPCQRF--TPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE 86 (551)
Q Consensus 14 ~l~~~~gk-vlv~F~a~----wC~~C~~~--~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (551)
+.+.-.+| ++|+++++ ||..|+.. .|.+.+..+ . ++.+.+.++.....
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~--~fv~w~~dv~~~eg-------------------- 65 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T--RMLFWACSVAKPEG-------------------- 65 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c--CEEEEEEecCChHH--------------------
Confidence 44555788 99999999 99999877 455555543 2 35555555554332
Q ss_pred hHHHHHhhcCCCCCcEEEEE---cCCCeEEE
Q 008845 87 TRDKLDELFKVMGIPHLVIL---DENGKVLS 114 (551)
Q Consensus 87 ~~~~l~~~~~v~~~P~~~li---d~~G~i~~ 114 (551)
..++..+++.++|++.++ +.+.+++.
T Consensus 66 --~~la~~l~~~~~P~~~~l~~~~~~~~vv~ 94 (116)
T cd02991 66 --YRVSQALRERTYPFLAMIMLKDNRMTIVG 94 (116)
T ss_pred --HHHHHHhCCCCCCEEEEEEecCCceEEEE
Confidence 468999999999999999 44444444
No 317
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.09 E-value=0.0039 Score=45.55 Aligned_cols=55 Identities=31% Similarity=0.486 Sum_probs=39.7
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|..+|||+|+.....|.+ . +++...++++.+.+. ...+.+..+..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~-~i~y~~~dv~~~~~~--------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------K-GIPYEEVDVDEDEEA--------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------T-TBEEEEEEGGGSHHH--------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------c-CCeeeEcccccchhH--------------------HHHHHHHcCCCccCE
Confidence 467899999999987766632 2 377778888866431 134666669999999
Q ss_pred EEE
Q 008845 103 LVI 105 (551)
Q Consensus 103 ~~l 105 (551)
+++
T Consensus 53 v~i 55 (60)
T PF00462_consen 53 VFI 55 (60)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 318
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.98 E-value=0.0074 Score=50.72 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=49.2
Q ss_pred CCCEEEEEEecC----CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH
Q 008845 338 AGKTILLYFSAH----WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 413 (551)
Q Consensus 338 ~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 413 (551)
.+|.++|+++++ ||..|+..+.. .++.+-+.. ++-+...++.... ...++.
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~~e---------------------g~~la~ 70 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAKPE---------------------GYRVSQ 70 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCChH---------------------HHHHHH
Confidence 489999999999 88999775432 222333332 3555555554332 247899
Q ss_pred hcCCCCcceEEEE---CCCCcEEEc
Q 008845 414 KFKVSGIPMLVAI---GPSGRTITK 435 (551)
Q Consensus 414 ~~~v~~~P~~~li---d~~G~i~~~ 435 (551)
.++++++|++.++ +.+..++.+
T Consensus 71 ~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 71 ALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred HhCCCCCCEEEEEEecCCceEEEEE
Confidence 9999999999999 544555665
No 319
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=96.95 E-value=0.0061 Score=50.21 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=49.2
Q ss_pred cccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC
Q 008845 7 YELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 63 (551)
Q Consensus 7 ~~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~ 63 (551)
.-+|+.++++.++|| +||.--|+-|+.-. ....|++++++++++| +.|++..++.
T Consensus 8 ~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g-l~ILaFPcnq 63 (108)
T PF00255_consen 8 DIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG-LEILAFPCNQ 63 (108)
T ss_dssp BTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT-EEEEEEEBST
T ss_pred CCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC-eEEEeeehHH
Confidence 357899999999999 88889999999888 8889999999999886 9999998763
No 320
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.93 E-value=0.0037 Score=49.38 Aligned_cols=66 Identities=18% Similarity=0.341 Sum_probs=45.9
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcC--CCCC
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK--VMGI 100 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~ 100 (551)
++.|+.+||++|++....|.++..++. ++.+..++++.+.... .++....+ +..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~--------------------~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISK--------------------ADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHH--------------------HHHHHHHCCCCCcC
Confidence 567899999999999999999887653 4677788887653211 22444343 5789
Q ss_pred cEEEEEcCCCeEEE
Q 008845 101 PHLVILDENGKVLS 114 (551)
Q Consensus 101 P~~~lid~~G~i~~ 114 (551)
|+++ + +|+.+.
T Consensus 60 P~if-i--~g~~ig 70 (85)
T PRK11200 60 PQIF-V--DQKHIG 70 (85)
T ss_pred CEEE-E--CCEEEc
Confidence 9976 4 566653
No 321
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.92 E-value=0.0047 Score=59.68 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=58.5
Q ss_pred ceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeC---CC-CH-------------HHHHHHH
Q 008845 11 LRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---DE-DD-------------EAFKGYF 72 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~---d~-~~-------------~~~~~~~ 72 (551)
..+....-.++ +++.|.-+-||+|+++.+.+.++.+. +++.+..+.+ .. +. ..+..+.
T Consensus 108 ~~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~ 183 (251)
T PRK11657 108 HWILDGKADAPRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYE 183 (251)
T ss_pred CCccccCCCCCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHH
Confidence 34444444677 88889999999999999998876543 3455544432 11 11 1122222
Q ss_pred hhCCCC--ccccC-Ch------hhHHHHHhhcCCCCCcEEEEEcCCCeEEE
Q 008845 73 SKMPWL--AVPFS-DS------ETRDKLDELFKVMGIPHLVILDENGKVLS 114 (551)
Q Consensus 73 ~~~~~~--~~~~~-~~------~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 114 (551)
..+... ...-. .. .....+...+|++++|++++.|.+|++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~ 234 (251)
T PRK11657 184 ASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQ 234 (251)
T ss_pred HhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 211110 01100 11 11235778999999999999998887543
No 322
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.91 E-value=0.004 Score=53.13 Aligned_cols=60 Identities=12% Similarity=0.267 Sum_probs=49.5
Q ss_pred CCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcEEEEEcCC
Q 008845 30 WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 109 (551)
Q Consensus 30 wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~ 109 (551)
-++-+....-.|.++++++... ++.++.|++|.+.+ ++.+|+|.++||++++ ++
T Consensus 47 r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~------------------------LA~~fgV~siPTLl~F-kd 100 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEA------------------------IGDRFGVFRFPATLVF-TG 100 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHH------------------------HHHHcCCccCCEEEEE-EC
Confidence 4566677777889999998632 48899999987754 9999999999999999 89
Q ss_pred CeEEEc
Q 008845 110 GKVLSD 115 (551)
Q Consensus 110 G~i~~~ 115 (551)
|+.+..
T Consensus 101 Gk~v~~ 106 (132)
T PRK11509 101 GNYRGV 106 (132)
T ss_pred CEEEEE
Confidence 999874
No 323
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.0032 Score=51.49 Aligned_cols=71 Identities=24% Similarity=0.491 Sum_probs=50.9
Q ss_pred CCEEEEEEec--------CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHH
Q 008845 339 GKTILLYFSA--------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 410 (551)
Q Consensus 339 gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 410 (551)
|+.++++|.+ +|||.|.+..|.+.+..+....+ +.+|-+.+..-+ .| .++...
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG~rp-~W---------------k~p~n~ 85 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVGNRP-YW---------------KDPANP 85 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEecCCC-cc---------------cCCCCc
Confidence 6667888874 59999999999998887766554 788888775432 11 133344
Q ss_pred HHHhcCC-CCcceEEEECC
Q 008845 411 LSRKFKV-SGIPMLVAIGP 428 (551)
Q Consensus 411 l~~~~~v-~~~P~~~lid~ 428 (551)
+.+..++ .++||++=.+.
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 5566666 89999998864
No 324
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.87 E-value=0.028 Score=51.37 Aligned_cols=128 Identities=21% Similarity=0.302 Sum_probs=80.8
Q ss_pred HHHhhcCcCCcceEEEECCC-CCcccccchhhhhhcCCCCCCCChhhHHHHHHHHHHHHhhhhhhhhhccCCccceecCC
Q 008845 250 KLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKN 328 (551)
Q Consensus 250 ~l~~~f~v~~~P~lvi~~~~-gk~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~ 328 (551)
.+++.+++.. |+++++... ++...-.+ . .++.+.+..++....- |.+.. .+
T Consensus 32 ~~~~~~~~~~-p~i~~~k~~~~~~~~y~~--------~---~~~~~~l~~fI~~~~~---------------P~v~~-~t 83 (184)
T PF13848_consen 32 ELAKKYGIKE-PTIVVYKKFDEKPVVYDG--------D---KFTPEELKKFIKKNSF---------------PLVPE-LT 83 (184)
T ss_dssp HHHHHCTCSS-SEEEEEECTTTSEEEESS--------S---TTSHHHHHHHHHHHSS---------------TSCEE-ES
T ss_pred HHHHHhCCCC-CcEEEeccCCCCceeccc--------c---cCCHHHHHHHHHHhcc---------------ccccc-cc
Confidence 4667789888 999999752 33221111 0 2578888888764321 22211 11
Q ss_pred CCee-ecccCCCCE-EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCch
Q 008845 329 GGKV-PVSDLAGKT-ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDA 406 (551)
Q Consensus 329 g~~v-~l~~~~gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d 406 (551)
...+ .+.. .+++ +++.|..............|..++++++++ +.++.+..+..+
T Consensus 84 ~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~~-------------------- 139 (184)
T PF13848_consen 84 PENFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDFP-------------------- 139 (184)
T ss_dssp TTHHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTTH--------------------
T ss_pred hhhHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHhH--------------------
Confidence 1111 1111 2445 777776666667788888888888888765 788888777443
Q ss_pred hhHHHHHhcCCC--CcceEEEECCCCcE
Q 008845 407 RKASLSRKFKVS--GIPMLVAIGPSGRT 432 (551)
Q Consensus 407 ~~~~l~~~~~v~--~~P~~~lid~~G~i 432 (551)
.+.+.||+. .+|.+++++.....
T Consensus 140 ---~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 140 ---RLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp ---HHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred ---HHHHHcCCCCccCCEEEEEECCCCc
Confidence 477899998 89999999955543
No 325
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.83 E-value=0.0078 Score=57.39 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=54.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---Ch----------------HHHHHHHhcCCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQ----------------TSFDEFFKGMPW 398 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~---~~----------------~~~~~~~~~~~~ 398 (551)
.|+.+++.|..+.||+|+++.+.+.++.+ . ++.|..+.... .+ ..+.+.+.....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 37899999999999999999998876533 1 35555543221 10 112222221110
Q ss_pred c--ccccCchhhHHHHHhcCCCCcceEEEECCCCcEE
Q 008845 399 L--ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433 (551)
Q Consensus 399 ~--~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 433 (551)
. ......+.+..+++.+||+++|++++ ++|+.+
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 0 01112245668899999999999995 578775
No 326
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.78 E-value=0.01 Score=55.18 Aligned_cols=88 Identities=20% Similarity=0.346 Sum_probs=53.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh----------------HHHHHHHhcCCCc-cc
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ----------------TSFDEFFKGMPWL-AL 401 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~----------------~~~~~~~~~~~~~-~~ 401 (551)
++..++.|..+.||+|+++.+.+.+ ...+ -.+.++.+.+...+ ..+.++....... ..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~-v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADG-VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCc-eEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 7899999999999999999998876 1111 12444444443211 1122222221110 11
Q ss_pred ---ccCchhhHHHHHhcCCCCcceEEEECCCCcEE
Q 008845 402 ---PFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 433 (551)
Q Consensus 402 ---~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~ 433 (551)
....+.+..+++.+||+++|+++ + ++|+.+
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 12234556889999999999998 4 457764
No 327
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.73 E-value=0.077 Score=57.29 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=48.8
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008845 336 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 415 (551)
Q Consensus 336 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 415 (551)
.+.+..-+..|..+.||+|+.....+++++... .++..-.|.....+ +++..|
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~id~~~~~-----------------------~~~~~~ 165 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMIDGALFQ-----------------------DEVEAR 165 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEEEchhCH-----------------------hHHHhc
Confidence 334556688899999999998888777765542 23555555443333 688999
Q ss_pred CCCCcceEEEECCCCcEEEc
Q 008845 416 KVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 416 ~v~~~P~~~lid~~G~i~~~ 435 (551)
++.++|++++ +|+.+..
T Consensus 166 ~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 166 NIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CCcccCEEEE---CCcEEEe
Confidence 9999999976 3444443
No 328
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.71 E-value=0.0096 Score=43.43 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=41.1
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|+.+|||+|++....|. +. ++.+-.++++.+++. ...+.+..+...+|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~----~~-----~i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD----EK-----GIPYEEVDVDEDEEA-------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH----HT-----TBEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHH----Hc-----CCeeeEcccccchhH-------------------HHHHHHHcCCCccCE
Confidence 46789999999999877662 22 366777777766421 234555569999999
Q ss_pred EEEECCCCcE
Q 008845 423 LVAIGPSGRT 432 (551)
Q Consensus 423 ~~lid~~G~i 432 (551)
+++ +|+.
T Consensus 53 v~i---~g~~ 59 (60)
T PF00462_consen 53 VFI---DGKF 59 (60)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCEE
Confidence 886 4554
No 329
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.64 E-value=0.0057 Score=49.11 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=48.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh------HH-HHHH--HhcCCCcccccCch-hhHHHH
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ------TS-FDEF--FKGMPWLALPFGDA-RKASLS 412 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~------~~-~~~~--~~~~~~~~~~~~~d-~~~~l~ 412 (551)
+..|+.+.||+|....+.+.++...... ++.+....+.-.. .. .+.. ..... ....+... ....++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG-KFEALHEALADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcC-cHHHHHHHHHHHHHH
Confidence 4679999999999999999888744433 3777776653211 11 1111 11100 00000000 445678
Q ss_pred HhcCCCCcceEEEEC
Q 008845 413 RKFKVSGIPMLVAIG 427 (551)
Q Consensus 413 ~~~~v~~~P~~~lid 427 (551)
..+|+.++|++++-|
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 899999999999976
No 330
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.032 Score=47.90 Aligned_cols=104 Identities=25% Similarity=0.209 Sum_probs=78.5
Q ss_pred ccCceeecccCCCc--EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccc-cCC
Q 008845 8 ELLLRVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP-FSD 84 (551)
Q Consensus 8 ~~~~~v~l~~~~gk--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~-~~~ 84 (551)
.+.+.++++++.|| ++..|=+-.-|-|......+++.+.++. +..++.||.| -+-+..+|....+...+. +++
T Consensus 32 ~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~---~~~Vl~IS~D-LPFAq~RfC~aeGi~nv~~lSd 107 (158)
T COG2077 32 KDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG---NTVVLCISMD-LPFAQKRFCGAEGIENVITLSD 107 (158)
T ss_pred CcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC---CcEEEEEeCC-ChhHHhhhhhhcCcccceEhhh
Confidence 45677899999999 5555667788999999999999988886 4778899988 567788898888876443 343
Q ss_pred hhhHHHHHhhcCCC--CC-------cEEEEEcCCCeEEEcC
Q 008845 85 SETRDKLDELFKVM--GI-------PHLVILDENGKVLSDG 116 (551)
Q Consensus 85 ~~~~~~l~~~~~v~--~~-------P~~~lid~~G~i~~~~ 116 (551)
-.. ....+.||+. .. -..+++|.+|++++..
T Consensus 108 ~r~-~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 108 FRD-RAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhh-hhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 222 3577788763 33 3669999999999863
No 331
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.58 E-value=0.022 Score=42.91 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=36.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|+++||++|.+....|.+ . ++.+..+++|.+... ...+.+..++..+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~--~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------R--GIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------C--CCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 567899999999998776654 1 255666677654321 113444457889999
Q ss_pred EEE
Q 008845 423 LVA 425 (551)
Q Consensus 423 ~~l 425 (551)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 875
No 332
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.58 E-value=0.0083 Score=58.09 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=54.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
+..|||.||-+.++.|..+...|..|+.+|.. +.++.|.....+ +...|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~------------------------~~~~f~~~ 197 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP------------------------ASENFPDK 197 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC------------------------TTTTS-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC------------------------cccCCccc
Confidence 56899999999999999999999999999975 688887765331 46789999
Q ss_pred CcceEEEECCCCcEEEccc
Q 008845 419 GIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 419 ~~P~~~lid~~G~i~~~~~ 437 (551)
..|+++++ ++|.++....
T Consensus 198 ~LPtllvY-k~G~l~~~~V 215 (265)
T PF02114_consen 198 NLPTLLVY-KNGDLIGNFV 215 (265)
T ss_dssp C-SEEEEE-ETTEEEEEEC
T ss_pred CCCEEEEE-ECCEEEEeEE
Confidence 99999999 7999887743
No 333
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0072 Score=55.47 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=53.2
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+++ ++++||++||.+|.++...+..+++..+ ++.++.+..+.. ..+++.+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~------------------------~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEF------------------------PEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhh------------------------hHHHHHHHH
Confidence 677 9999999999999999999999988873 355555444433 358999999
Q ss_pred CCCcEEEEEcCCCeEEE
Q 008845 98 MGIPHLVILDENGKVLS 114 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~ 114 (551)
...|+..++ ..|+.+.
T Consensus 69 ~~vp~~~~~-~~~~~v~ 84 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVD 84 (227)
T ss_pred hcCceeeee-ecchhhh
Confidence 999999888 5565543
No 334
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.56 E-value=0.02 Score=43.12 Aligned_cols=55 Identities=27% Similarity=0.353 Sum_probs=36.8
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|+++||++|+...+.|.+. ++.+..++++.+.+.. ..+.+..++.++|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~--------------------~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEAL--------------------EELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHH--------------------HHHHHHcCCcccCE
Confidence 5678999999999987776652 2556666776543311 23444457889998
Q ss_pred EEE
Q 008845 103 LVI 105 (551)
Q Consensus 103 ~~l 105 (551)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 865
No 335
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.53 E-value=0.008 Score=47.47 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=45.8
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhc--CCCCc
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF--KVSGI 420 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~--~v~~~ 420 (551)
++.|+.+|||+|++....|+++..++. ++.+..++++.+..+. .++.+.+ ++..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~-------------------~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISK-------------------ADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHH-------------------HHHHHHHCCCCCcC
Confidence 677999999999999999998876542 4777788887653211 1333333 45889
Q ss_pred ceEEEECCCCcEEE
Q 008845 421 PMLVAIGPSGRTIT 434 (551)
Q Consensus 421 P~~~lid~~G~i~~ 434 (551)
|+++ + +|+.+.
T Consensus 60 P~if-i--~g~~ig 70 (85)
T PRK11200 60 PQIF-V--DQKHIG 70 (85)
T ss_pred CEEE-E--CCEEEc
Confidence 9976 4 576654
No 336
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.53 E-value=0.026 Score=53.81 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=57.4
Q ss_pred eeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC------------------C-HHHHHHH
Q 008845 12 RVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE------------------D-DEAFKGY 71 (551)
Q Consensus 12 ~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~------------------~-~~~~~~~ 71 (551)
.+....-.|+ +++.|.-+.||+|+++.+++.++.+ . ++.|..+.... + ...+.++
T Consensus 99 ~i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~-~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~ 173 (232)
T PRK10877 99 MIVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYNA----L-GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDA 173 (232)
T ss_pred cEEecCCCCCEEEEEEECCCChHHHHHHHHHHHHhc----C-CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHH
Confidence 3444444678 8999999999999999999887643 2 25555543221 1 1122233
Q ss_pred HhhCCCCccc-cCChhhHHHHHhhcCCCCCcEEEEEcCCCeEE
Q 008845 72 FSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKVL 113 (551)
Q Consensus 72 ~~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 113 (551)
+......... -..-.....+++.+||+++|++++ .+|+++
T Consensus 174 ~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 174 MKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred HcCCCCCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 3222111111 122234467899999999999884 567766
No 337
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.45 E-value=0.0098 Score=46.39 Aligned_cols=63 Identities=29% Similarity=0.478 Sum_probs=42.3
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|.++|||+|+...+.|.++.- .+.++-++.+.+....+ ..+.+..+..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~-------------------~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQ-------------------DYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHH-------------------HHHHHHhCCCCCCe
Confidence 567889999999999888887643 24566666654422111 24666778899999
Q ss_pred EEEEcCCCeEE
Q 008845 103 LVILDENGKVL 113 (551)
Q Consensus 103 ~~lid~~G~i~ 113 (551)
++ + +|+.+
T Consensus 57 v~-~--~g~~i 64 (82)
T cd03419 57 VF-I--GGKFI 64 (82)
T ss_pred EE-E--CCEEE
Confidence 74 3 45554
No 338
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.42 E-value=0.2 Score=54.05 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=47.6
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 335 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 335 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
..+.+..-+..|..+.||+|+.....++++....+ ++..-.|.....+ +++..
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~id~~~~~-----------------------~~~~~ 165 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMIDGALFQ-----------------------DEVEA 165 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEEEchhCH-----------------------HHHHh
Confidence 34445666888999999999987776666554432 3554444333332 68899
Q ss_pred cCCCCcceEEEECCCCcEEEc
Q 008845 415 FKVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~~~ 435 (551)
|++.++|++++ +|+.+..
T Consensus 166 ~~v~~VP~~~i---~~~~~~~ 183 (515)
T TIGR03140 166 LGIQGVPAVFL---NGEEFHN 183 (515)
T ss_pred cCCcccCEEEE---CCcEEEe
Confidence 99999999986 3444443
No 339
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.42 E-value=0.038 Score=51.33 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=74.3
Q ss_pred eecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCChHHHH-HHHhcCCCcccccCc--hh
Q 008845 332 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFD-EFFKGMPWLALPFGD--AR 407 (551)
Q Consensus 332 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~vv~vs~d~~~~~~~-~~~~~~~~~~~~~~~--d~ 407 (551)
....+..|+++||.+-..+|..|...+..|+.|..++... +.++.++.|+--.....+. ..+++.--..+|+.. ..
T Consensus 19 ~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~ 98 (238)
T PF04592_consen 19 DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDEN 98 (238)
T ss_pred hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCcc
Confidence 4556678999999999999999999999999999999765 4678888887654433333 233333224466653 34
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEEEc
Q 008845 408 KASLSRKFKVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 408 ~~~l~~~~~v~~~P~~~lid~~G~i~~~ 435 (551)
...++..++-.. =-++|+|+=|++.+.
T Consensus 99 q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 99 QPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred ccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 456777776442 358999999999987
No 340
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.0085 Score=49.10 Aligned_cols=75 Identities=21% Similarity=0.452 Sum_probs=50.3
Q ss_pred cccC-CCc-EEEEEec--------CCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCC
Q 008845 15 LDSL-KGK-IGLYFSA--------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 84 (551)
Q Consensus 15 l~~~-~gk-vlv~F~a--------~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (551)
+++. .|+ ++|+|++ ||||.|.+..|.+.++.+.... ++.+|.+.+..- +. |....
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~r-p~---------Wk~p~--- 83 (128)
T KOG3425|consen 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNR-PY---------WKDPA--- 83 (128)
T ss_pred HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCC-Cc---------ccCCC---
Confidence 3444 577 9999985 6999999999999999885553 577777776632 11 11000
Q ss_pred hhhHHHHHhhcCC-CCCcEEEEEcC
Q 008845 85 SETRDKLDELFKV-MGIPHLVILDE 108 (551)
Q Consensus 85 ~~~~~~l~~~~~v-~~~P~~~lid~ 108 (551)
.......++ .++||++=.+.
T Consensus 84 ----n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 ----NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ----CccccCCCceeecceeeEEcC
Confidence 124444555 89999988863
No 341
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.33 E-value=0.019 Score=46.02 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=48.4
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCC--CC-----HHHHHHHHh-hCCCCccccCChhhHHHHHhh
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD--ED-----DEAFKGYFS-KMPWLAVPFSDSETRDKLDEL 94 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d--~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 94 (551)
++.|+.+.||+|....+.+.++...... ++.+....+. .. ....+.... ........+.+.-....+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 4679999999999999999998744433 4666666543 21 111111111 100000001110023467788
Q ss_pred cCCCCCcEEEEEc
Q 008845 95 FKVMGIPHLVILD 107 (551)
Q Consensus 95 ~~v~~~P~~~lid 107 (551)
+|+.++|++++-|
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 9999999998875
No 342
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.31 E-value=0.022 Score=47.44 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=59.6
Q ss_pred cEEEEEEecCCCccchhhhHHHHHHHHH---HhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcC
Q 008845 180 KTIGLYFSMSSYKASAEFTPRLVEVYEK---LKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 256 (551)
Q Consensus 180 k~v~l~f~~~~~~~c~~~~~~~~~~~~~---~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~ 256 (551)
+...++| .+ .....+.+.+.+++++ ++++ +.|+.+|.+. ....+++||
T Consensus 18 ~~~~l~f-~~--~~~~~~~~~~~~vAk~~~~~kgk-----i~Fv~~d~~~---------------------~~~~~~~fg 68 (111)
T cd03072 18 PFLILFH-DK--DDLESLKEFKQAVARQLISEKGA-----INFLTADGDK---------------------FRHPLLHLG 68 (111)
T ss_pred CeEEEEe-cc--hHHHHHHHHHHHHHHHHHhcCce-----EEEEEEechH---------------------hhhHHHHcC
Confidence 3444555 22 2346778888899999 8876 8888888875 455889999
Q ss_pred cCC--cceEEEECCCC--CcccccchhhhhhcCCCCCCCChhhHHHHHHHHHH
Q 008845 257 LST--LPTLVIIGPDG--KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRA 305 (551)
Q Consensus 257 v~~--~P~lvi~~~~g--k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 305 (551)
++. +|.+++.+.++ |+.. . .-.++.+.+.+|++...+
T Consensus 69 l~~~~~P~i~i~~~~~~~Ky~~-~-----------~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 69 KTPADLPVIAIDSFRHMYLFPD-F-----------EDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CCHhHCCEEEEEcchhcCcCCC-C-----------ccccCHHHHHHHHHHHhc
Confidence 985 99999998654 3321 0 114688999999887654
No 343
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.28 E-value=0.035 Score=41.60 Aligned_cols=61 Identities=31% Similarity=0.435 Sum_probs=41.3
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|.++||++|+...+.|.+.. +.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~--------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGEL--------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHH--------------------HHHHHHHhCCCCcCE
Confidence 56788999999999888877553 44566677655431 124556667788897
Q ss_pred EEEEcCCCeEEE
Q 008845 103 LVILDENGKVLS 114 (551)
Q Consensus 103 ~~lid~~G~i~~ 114 (551)
+++ +|+.+.
T Consensus 54 ~~~---~~~~ig 62 (72)
T cd02066 54 IFI---NGEFIG 62 (72)
T ss_pred EEE---CCEEEe
Confidence 754 566554
No 344
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.25 E-value=0.013 Score=45.68 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=42.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|.++|||+|....+.|.++.- .+.++-++.+.+.... ...+.+..+..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCCe
Confidence 467889999999999888766433 2567777766543211 124566778899999
Q ss_pred EEEECCCCcEE
Q 008845 423 LVAIGPSGRTI 433 (551)
Q Consensus 423 ~~lid~~G~i~ 433 (551)
++ + +|+.+
T Consensus 57 v~-~--~g~~i 64 (82)
T cd03419 57 VF-I--GGKFI 64 (82)
T ss_pred EE-E--CCEEE
Confidence 74 4 45554
No 345
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.22 E-value=0.00078 Score=61.88 Aligned_cols=73 Identities=22% Similarity=0.397 Sum_probs=56.6
Q ss_pred CcEEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCC
Q 008845 20 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 99 (551)
Q Consensus 20 gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 99 (551)
|..++.|+|||||.|+...|+|..++.--.+- .+.+..|++..+. -|.=+|=+.+
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~np------------------------gLsGRF~vta 94 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNP------------------------GLSGRFLVTA 94 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEecc------------------------ccceeeEEEe
Confidence 33889999999999999999999887655443 4777777766543 2667788899
Q ss_pred CcEEEEEcCCCeEEEcCcc
Q 008845 100 IPHLVILDENGKVLSDGGV 118 (551)
Q Consensus 100 ~P~~~lid~~G~i~~~~~~ 118 (551)
.|+++=+ ++|......|.
T Consensus 95 LptIYHv-kDGeFrrysga 112 (248)
T KOG0913|consen 95 LPTIYHV-KDGEFRRYSGA 112 (248)
T ss_pred cceEEEe-eccccccccCc
Confidence 9999988 88987765444
No 346
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.16 E-value=0.018 Score=55.71 Aligned_cols=88 Identities=14% Similarity=0.238 Sum_probs=60.3
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCc
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 101 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 101 (551)
|||+||-+.++.|..+...|..++.+|. .++++.|...... +...|.+...|
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~~-------------------------~~~~f~~~~LP 200 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKCP-------------------------ASENFPDKNLP 200 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGCC-------------------------TTTTS-TTC-S
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhccC-------------------------cccCCcccCCC
Confidence 9999999999999999999999999998 4677777655221 34668999999
Q ss_pred EEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHHHH
Q 008845 102 HLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 142 (551)
Q Consensus 102 ~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 142 (551)
+++++ ++|.++.. -+.+....| -.++...++.+|..
T Consensus 201 tllvY-k~G~l~~~-~V~l~~~~g---~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 201 TLLVY-KNGDLIGN-FVGLTDLLG---DDFFTEDLEAFLIE 236 (265)
T ss_dssp EEEEE-ETTEEEEE-ECTGGGCT----TT--HHHHHHHHHT
T ss_pred EEEEE-ECCEEEEe-EEehHHhcC---CCCCHHHHHHHHHH
Confidence 99999 79988763 222222222 23677778877744
No 347
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.13 E-value=0.044 Score=45.66 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=52.2
Q ss_pred cchhhhHHHHHHHHHHh-cCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCcC--C--cceEEEEC
Q 008845 193 ASAEFTPRLVEVYEKLK-GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--T--LPTLVIIG 267 (551)
Q Consensus 193 ~c~~~~~~~~~~~~~~~-~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v~--~--~P~lvi~~ 267 (551)
....+.+.+.+++++++ ++ +.|+.+|.+. ...++++|||+ . .|++++++
T Consensus 32 ~~~~~~~~~~~vAk~fk~gk-----i~Fv~~D~~~---------------------~~~~l~~fgl~~~~~~~P~~~i~~ 85 (111)
T cd03073 32 GTNYWRNRVLKVAKDFPDRK-----LNFAVADKED---------------------FSHELEEFGLDFSGGEKPVVAIRT 85 (111)
T ss_pred HHHHHHHHHHHHHHHCcCCe-----EEEEEEcHHH---------------------HHHHHHHcCCCcccCCCCEEEEEe
Confidence 34567788889999999 56 8888888765 45678999998 4 99999998
Q ss_pred CCC-CcccccchhhhhhcCCCCCCC-ChhhHHHHHHH
Q 008845 268 PDG-KTLHSNVAEAIEEHGVGAFPF-TPEKFAELAEI 302 (551)
Q Consensus 268 ~~g-k~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~ 302 (551)
.++ |+.... .+ +.+.+.+|++.
T Consensus 86 ~~~~KY~~~~-------------~~~t~e~i~~F~~~ 109 (111)
T cd03073 86 AKGKKYVMEE-------------EFSDVDALEEFLED 109 (111)
T ss_pred CCCCccCCCc-------------ccCCHHHHHHHHHH
Confidence 654 332111 24 78888888764
No 348
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.98 E-value=0.026 Score=48.50 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=55.9
Q ss_pred hhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCcC--CcceEEEECCCC-C
Q 008845 195 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--TLPTLVIIGPDG-K 271 (551)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v~--~~P~lvi~~~~g-k 271 (551)
..+...+.++++++++++ +.|+.+|.+. ...+.++|||. ++|++++++.++ +
T Consensus 40 ~~~~~~l~~vAk~~kgk~----i~Fv~vd~~~---------------------~~~~~~~fgl~~~~~P~v~i~~~~~~K 94 (130)
T cd02983 40 NKYLEILKSVAEKFKKKP----WGWLWTEAGA---------------------QLDLEEALNIGGFGYPAMVAINFRKMK 94 (130)
T ss_pred HHHHHHHHHHHHHhcCCc----EEEEEEeCcc---------------------cHHHHHHcCCCccCCCEEEEEecccCc
Confidence 456678888999998764 5666666654 44588999996 599999998765 4
Q ss_pred cccccchhhhhhcCCCCCCCChhhHHHHHHHHHHHHh
Q 008845 272 TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEE 308 (551)
Q Consensus 272 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (551)
+.... -++|.+.+.+|++....+..
T Consensus 95 Y~~~~------------~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 95 FATLK------------GSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred ccccc------------CccCHHHHHHHHHHHHcCCc
Confidence 43111 15799999999988876553
No 349
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.87 E-value=0.027 Score=44.52 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=27.4
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~ 64 (551)
++.|..+|||+|++....|.++..+.. .+.+..++++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCC
Confidence 567889999999998888877654432 245566666643
No 350
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.74 E-value=0.052 Score=40.59 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|.++|||+|+.....|.+.. +.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 46788999999999888776432 45556677655421 124555667788897
Q ss_pred EEEECCCCcEEE
Q 008845 423 LVAIGPSGRTIT 434 (551)
Q Consensus 423 ~~lid~~G~i~~ 434 (551)
+++ +|+.+.
T Consensus 54 ~~~---~~~~ig 62 (72)
T cd02066 54 IFI---NGEFIG 62 (72)
T ss_pred EEE---CCEEEe
Confidence 754 566554
No 351
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.73 E-value=0.047 Score=42.33 Aligned_cols=60 Identities=18% Similarity=0.369 Sum_probs=40.4
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCc
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 101 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 101 (551)
-++.|..+||++|++....|.+ . ++....++++.+.+. ..+.+..+...+|
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~-gi~y~~idi~~~~~~---------------------~~~~~~~g~~~vP 59 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------K-GYDFEEIPLGNDARG---------------------RSLRAVTGATTVP 59 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------c-CCCcEEEECCCChHH---------------------HHHHHHHCCCCcC
Confidence 5667899999999988777753 2 255556677654331 2355567889999
Q ss_pred EEEEEcCCCeEE
Q 008845 102 HLVILDENGKVL 113 (551)
Q Consensus 102 ~~~lid~~G~i~ 113 (551)
.+++ +|+.+
T Consensus 60 ~i~i---~g~~i 68 (79)
T TIGR02190 60 QVFI---GGKLI 68 (79)
T ss_pred eEEE---CCEEE
Confidence 9864 46554
No 352
>PHA03050 glutaredoxin; Provisional
Probab=95.61 E-value=0.032 Score=46.18 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=38.9
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC--CHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCC
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE--DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 99 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 99 (551)
-++.|..+|||+|++....|.+..-... .+.++ +++. +...+ ...+.+.-|...
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i--~i~~~~~~~~~-------------------~~~l~~~tG~~t 69 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIV--DIKEFKPENEL-------------------RDYFEQITGGRT 69 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEE--ECCCCCCCHHH-------------------HHHHHHHcCCCC
Confidence 4566999999999988777665422111 24444 4443 21111 234666678889
Q ss_pred CcEEEEEcCCCeEE
Q 008845 100 IPHLVILDENGKVL 113 (551)
Q Consensus 100 ~P~~~lid~~G~i~ 113 (551)
+|.+++ +|+.+
T Consensus 70 VP~IfI---~g~~i 80 (108)
T PHA03050 70 VPRIFF---GKTSI 80 (108)
T ss_pred cCEEEE---CCEEE
Confidence 998854 35555
No 353
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.078 Score=56.90 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=51.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 415 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 415 (551)
+|||+|....+||.+|..|...= .+++.-+. -.+|.|.||+..- |..+..-..+++..
T Consensus 43 dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN-----~~FV~IKVDREER--------------PDvD~~Ym~~~q~~ 103 (667)
T COG1331 43 DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN-----ENFVPVKVDREER--------------PDVDSLYMNASQAI 103 (667)
T ss_pred CCCEEEEeccccccchHHHhhhcCCCHHHHHHHH-----hCceeeeEChhhc--------------cCHHHHHHHHHHHh
Confidence 89999999999999999976531 12222332 2578888887531 11111122344443
Q ss_pred -CCCCcceEEEECCCCcEEEc
Q 008845 416 -KVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 416 -~v~~~P~~~lid~~G~i~~~ 435 (551)
|--|+|-++++-|+|+..+.
T Consensus 104 tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred ccCCCCceeEEECCCCceeee
Confidence 34589999999999999775
No 354
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=95.49 E-value=0.058 Score=49.47 Aligned_cols=110 Identities=24% Similarity=0.487 Sum_probs=76.6
Q ss_pred cccee-cCCCCeeecccC-CCCE--EEEEEe-----cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHH
Q 008845 321 LDFVV-GKNGGKVPVSDL-AGKT--ILLYFS-----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 391 (551)
Q Consensus 321 ~~f~~-~~~g~~v~l~~~-~gk~--vll~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~ 391 (551)
.++++ +.+|. ++|+++ .|+. ++-.|. ...|+.|...+..+......+..+ ++.++.||-. ..+.+..
T Consensus 47 ~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r--d~tfa~vSra-P~~~i~a 122 (211)
T PF05988_consen 47 KDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR--DTTFAVVSRA-PLEKIEA 122 (211)
T ss_pred CCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC--CceEEEEeCC-CHHHHHH
Confidence 45777 55555 888876 5653 333333 457999999999997767777766 5788888764 5588999
Q ss_pred HHhcCCCcccccCchhhHHHHHhcCC-----CCcceEEEECCC-CcEEEc
Q 008845 392 FFKGMPWLALPFGDARKASLSRKFKV-----SGIPMLVAIGPS-GRTITK 435 (551)
Q Consensus 392 ~~~~~~~~~~~~~~d~~~~l~~~~~v-----~~~P~~~lid~~-G~i~~~ 435 (551)
|.+.|+|. +|..+.....+...|++ ...|.+-++=++ |+|...
T Consensus 123 fk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 123 FKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred HHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 99999998 88877666677778887 455654433344 555443
No 355
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.44 E-value=0.072 Score=49.51 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=75.0
Q ss_pred cccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCC--CEEEEEEeCCCCHHHHH-HHHhhCCCCcccc
Q 008845 7 YELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG--DFEVIFVSGDEDDEAFK-GYFSKMPWLAVPF 82 (551)
Q Consensus 7 ~~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~--~~~vv~v~~d~~~~~~~-~~~~~~~~~~~~~ 82 (551)
++.|+.....+..|+ +||-+-..+|.+|...+..|..|..+|...| ++.++.|+--.....+. ..++..-...+++
T Consensus 13 W~i~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipV 92 (238)
T PF04592_consen 13 WKIGGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPV 92 (238)
T ss_pred ceECCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCce
Confidence 455666667788999 8888888899999999999999999998887 67777776543333332 3444444434443
Q ss_pred C-ChhhHHHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 83 S-DSETRDKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 83 ~-~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
. .......++..++-... -++|+|+=|++++.
T Consensus 93 yqq~~~q~dvW~~L~G~kd-D~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 93 YQQDENQPDVWELLNGSKD-DFLIYDRCGRLTYH 125 (238)
T ss_pred ecCCccccCHHHHhCCCcC-cEEEEeccCcEEEE
Confidence 3 12222457777776544 46888999999875
No 356
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=95.44 E-value=0.009 Score=40.20 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=27.7
Q ss_pred ecCCCCCCCCceeEecccC-CCCcccccccC
Q 008845 492 SCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 521 (551)
Q Consensus 492 ~~~~c~~~g~~~~~~~~~~-~~~~~~~~~~~ 521 (551)
.||+|.+...|-.|+|.+| +|||...|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 5999999999999999999 89999999863
No 357
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.38 E-value=0.053 Score=41.94 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=37.9
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcEE
Q 008845 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 103 (551)
Q Consensus 24 v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 103 (551)
+.|+.+|||+|......|.+. ++.+-.++++.+.+.. .++.+..+...+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~--------------------~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALR--------------------DEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHH--------------------HHHHHHhCCCCcCEE
Confidence 567899999999988777642 2444555666554321 235555678889987
Q ss_pred EEEcCCCeEE
Q 008845 104 VILDENGKVL 113 (551)
Q Consensus 104 ~lid~~G~i~ 113 (551)
+ + +|+.+
T Consensus 54 ~-i--~g~~i 60 (79)
T TIGR02181 54 F-I--GDVHV 60 (79)
T ss_pred E-E--CCEEE
Confidence 4 4 35544
No 358
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.36 E-value=0.086 Score=47.86 Aligned_cols=40 Identities=30% Similarity=0.452 Sum_probs=32.4
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEe
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 60 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~ 60 (551)
.++ .++.|+...||+|+.+.+.+.++.+++.. ++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcC
Confidence 577 99999999999999999999999988843 35554443
No 359
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.28 E-value=0.068 Score=43.52 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=37.6
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCc
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 101 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 101 (551)
-++.|..||||+|++....|.+. . +..-.+++|.+.+.. + ....+.+..+...+|
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~----~----i~~~~vdid~~~~~~-~----------------~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL----G----VNPAVHEIDKEPAGK-D----------------IENALSRLGCSPAVP 63 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc----C----CCCEEEEcCCCccHH-H----------------HHHHHHHhcCCCCcC
Confidence 35568899999999877655543 1 333455665443210 0 112355556788999
Q ss_pred EEEEEcCCCeEE
Q 008845 102 HLVILDENGKVL 113 (551)
Q Consensus 102 ~~~lid~~G~i~ 113 (551)
.++ + +|+.+
T Consensus 64 ~Vf-i--~g~~i 72 (99)
T TIGR02189 64 AVF-V--GGKLV 72 (99)
T ss_pred eEE-E--CCEEE
Confidence 874 4 35554
No 360
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.27 E-value=0.092 Score=40.01 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=38.6
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC-CCc
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM-GIP 101 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~P 101 (551)
++.|..+|||+|+.....|.+. ++.+..++++.+.+.. ..+.+..+.. ++|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~--------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALR--------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHH--------------------HHHHHHhCCCCccC
Confidence 4568889999999877777642 2556667777654321 2344556666 889
Q ss_pred EEEEEcCCCeEE
Q 008845 102 HLVILDENGKVL 113 (551)
Q Consensus 102 ~~~lid~~G~i~ 113 (551)
.++ + +|+.+
T Consensus 54 ~v~-i--~g~~i 62 (75)
T cd03418 54 QIF-I--GDVHI 62 (75)
T ss_pred EEE-E--CCEEE
Confidence 764 4 35555
No 361
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.10 E-value=0.11 Score=39.52 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=39.4
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|..+||++|++....|.+ . ++++..++++.+.+. ...+.+..+...+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~-gi~~~~~di~~~~~~--------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K-GLPYVEINIDIFPER--------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C-CCceEEEECCCCHHH--------------------HHHHHHHhCCCCcCE
Confidence 445778999999988776664 2 356667777765432 134666667778898
Q ss_pred EEEEcCCCeEE
Q 008845 103 LVILDENGKVL 113 (551)
Q Consensus 103 ~~lid~~G~i~ 113 (551)
+++ +|+.+
T Consensus 55 v~i---~~~~i 62 (73)
T cd03027 55 IFF---NEKLV 62 (73)
T ss_pred EEE---CCEEE
Confidence 744 35554
No 362
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.03 E-value=0.09 Score=46.85 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=44.0
Q ss_pred ceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHH
Q 008845 11 LRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 66 (551)
Q Consensus 11 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~ 66 (551)
..+.+.+-.++ +|+.|+...||+|+.+.+.+.++.+++-+.+++.+++..+.....
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 34566777788 899999999999999999999999998555679999988764433
No 363
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.99 E-value=0.17 Score=41.33 Aligned_cols=78 Identities=14% Similarity=0.317 Sum_probs=54.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
.++++|+=-++.||........+++.++...+. +.+..+.+-... +-.+.+++.|||+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R-------------------~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYR-------------------PVSNAIAEDFGVK 76 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGH-------------------HHHHHHHHHHT--
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCc-------------------hhHHHHHHHhCCC
Confidence 678898888999999999999888887776543 777888775443 2245799999998
Q ss_pred -CcceEEEECCCCcEEEcccch
Q 008845 419 -GIPMLVAIGPSGRTITKEARD 439 (551)
Q Consensus 419 -~~P~~~lid~~G~i~~~~~~~ 439 (551)
.-|-+++| ++|+++......
T Consensus 77 HeSPQ~ili-~~g~~v~~aSH~ 97 (105)
T PF11009_consen 77 HESPQVILI-KNGKVVWHASHW 97 (105)
T ss_dssp --SSEEEEE-ETTEEEEEEEGG
T ss_pred cCCCcEEEE-ECCEEEEECccc
Confidence 57999999 899999875433
No 364
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.90 E-value=0.07 Score=42.15 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=40.1
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcC--CCCc
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK--VSGI 420 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~--v~~~ 420 (551)
++.|..+|||+|.+....|.++..+.. ++.+..++++.+... ..++.+.++ +..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGIS-------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCCc
Confidence 567889999999998888776543321 245666666543211 113444555 4789
Q ss_pred ceEEEECCCCcEE
Q 008845 421 PMLVAIGPSGRTI 433 (551)
Q Consensus 421 P~~~lid~~G~i~ 433 (551)
|.+++ +|+.+
T Consensus 59 P~ifi---~g~~i 68 (86)
T TIGR02183 59 PQIFV---DEKHV 68 (86)
T ss_pred CeEEE---CCEEe
Confidence 99854 45543
No 365
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.87 E-value=0.11 Score=43.08 Aligned_cols=84 Identities=15% Similarity=0.313 Sum_probs=63.0
Q ss_pred Cccc-eecccCceeecccC--CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCC
Q 008845 1 MEIM-KIYELLLRVKLDSL--KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP 76 (551)
Q Consensus 1 ~~~~-~~~~~~~~v~l~~~--~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 76 (551)
|++| .++.++..|.-+-. ..| |+|-|.-.|-|-|.++-..|...+..++.- ..|..+.+|+.+
T Consensus 1 ms~lLp~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf--a~IylvdideV~----------- 67 (142)
T KOG3414|consen 1 MSYLLPTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF--AVIYLVDIDEVP----------- 67 (142)
T ss_pred CceeccccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc--eEEEEEecchhh-----------
Confidence 4443 47888888875443 456 889999999999999999999999998742 355566666443
Q ss_pred CCccccCChhhHHHHHhhcCCCCCcEEEEEcCCC
Q 008845 77 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENG 110 (551)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G 110 (551)
.+.+.|++...|+++++=.+.
T Consensus 68 -------------~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 68 -------------DFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred -------------hhhhhhcccCCceEEEEEcCc
Confidence 477889999999997763333
No 366
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.81 E-value=0.25 Score=53.32 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=43.2
Q ss_pred CCcEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCc
Q 008845 178 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 257 (551)
Q Consensus 178 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v 257 (551)
.++.-...|..++||.|+.....+.+++.. +.+ |.+-.+|... ++.+++.|++
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~--i~~~~id~~~---------------------~~~~~~~~~v 167 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPN--ITHTMIDGAL---------------------FQDEVEARNI 167 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCC--ceEEEEEchh---------------------CHhHHHhcCC
Confidence 445557779999999998777666655553 333 3343445443 6788899999
Q ss_pred CCcceEEE
Q 008845 258 STLPTLVI 265 (551)
Q Consensus 258 ~~~P~lvi 265 (551)
..+|++++
T Consensus 168 ~~VP~~~i 175 (517)
T PRK15317 168 MAVPTVFL 175 (517)
T ss_pred cccCEEEE
Confidence 99999976
No 367
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.80 E-value=0.38 Score=37.46 Aligned_cols=54 Identities=20% Similarity=0.417 Sum_probs=36.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
+..|..+|||+|.+....|.+ + ++.+-.++++.+++... .+ +..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~~-------------------~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAAE-------------------TL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHHH-------------------HH-HHcCCCCcCE
Confidence 456888999999997776632 2 46666777776653211 22 3347789999
Q ss_pred EEE
Q 008845 423 LVA 425 (551)
Q Consensus 423 ~~l 425 (551)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
No 368
>PHA03050 glutaredoxin; Provisional
Probab=94.74 E-value=0.068 Score=44.25 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=39.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|..+|||+|++....|.+..-. ...++++-|+-..+..++ ...+.+.-|.+.+|.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~----~~~~~~i~i~~~~~~~~~------------------~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFK----RGAYEIVDIKEFKPENEL------------------RDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCC----cCCcEEEECCCCCCCHHH------------------HHHHHHHcCCCCcCE
Confidence 6679999999999987776543211 112455444321121111 235666668889999
Q ss_pred EEEECCCCcEEE
Q 008845 423 LVAIGPSGRTIT 434 (551)
Q Consensus 423 ~~lid~~G~i~~ 434 (551)
+|+ +|+.+.
T Consensus 73 IfI---~g~~iG 81 (108)
T PHA03050 73 IFF---GKTSIG 81 (108)
T ss_pred EEE---CCEEEe
Confidence 855 366543
No 369
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.68 E-value=0.072 Score=46.89 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=31.7
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 61 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~ 61 (551)
.++ +++.|+.++||+|+.+.|.+.++...+. ++.+++..+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeC
Confidence 467 8899999999999999999999877653 456665543
No 370
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.65 E-value=0.13 Score=39.79 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=41.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
.+.-++.|..+|||+|++....|.+ . ++.+..++++.+.. ...+.+..|..
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~----~-----gi~y~~idi~~~~~--------------------~~~~~~~~g~~ 56 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE----K-----GYDFEEIPLGNDAR--------------------GRSLRAVTGAT 56 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH----c-----CCCcEEEECCCChH--------------------HHHHHHHHCCC
Confidence 3444667999999999998877753 2 24455566665432 12355567889
Q ss_pred CcceEEEECCCCcEE
Q 008845 419 GIPMLVAIGPSGRTI 433 (551)
Q Consensus 419 ~~P~~~lid~~G~i~ 433 (551)
.+|.+++ +|+.+
T Consensus 57 ~vP~i~i---~g~~i 68 (79)
T TIGR02190 57 TVPQVFI---GGKLI 68 (79)
T ss_pred CcCeEEE---CCEEE
Confidence 9999864 46554
No 371
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.61 E-value=0.16 Score=38.48 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=38.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|..+|||+|.+....|.+ + ++++..++++.+... ..+....+...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~----~i~~~~~~v~~~~~~---------------------~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N----GISYEEIPLGKDITG---------------------RSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c----CCCcEEEECCCChhH---------------------HHHHHHhCCCCcCe
Confidence 456888999999988766663 1 255556666654320 23555568889998
Q ss_pred EEEEcCCCeEE
Q 008845 103 LVILDENGKVL 113 (551)
Q Consensus 103 ~~lid~~G~i~ 113 (551)
+ ++ +|+.+
T Consensus 54 i-fi--~g~~i 61 (72)
T cd03029 54 V-FI--DGELI 61 (72)
T ss_pred E-EE--CCEEE
Confidence 7 45 35554
No 372
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=94.47 E-value=0.68 Score=40.50 Aligned_cols=122 Identities=10% Similarity=0.159 Sum_probs=74.2
Q ss_pred CCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHH-HhhcCCCeEEEE-EeCCCC---hHHH-----HHHHhcCC
Q 008845 328 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKK-IKERNESLEVVF-ISSDRD---QTSF-----DEFFKGMP 397 (551)
Q Consensus 328 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~vv~-vs~d~~---~~~~-----~~~~~~~~ 397 (551)
+.+....+.+.||+-+|...|-.-..=..-.|.+..+... +... .++... |+.|.. ...+ ++--+++|
T Consensus 26 ~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p 103 (160)
T PF09695_consen 26 SYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFP 103 (160)
T ss_pred cccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhCC
Confidence 4455667788999999988876544444455555555433 4432 344433 345432 1222 22223445
Q ss_pred CcccccCchhhHHHHHhcCCCCc-ceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 008845 398 WLALPFGDARKASLSRKFKVSGI-PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 464 (551)
Q Consensus 398 ~~~~~~~~d~~~~l~~~~~v~~~-P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~ 464 (551)
|-.+ ..|.++.+.+.+++..- -.++++|++|++++...+ .+++.++++..+.|+
T Consensus 104 ~s~~--vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G-----------~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 104 WSQF--VLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEG-----------ALSPAEVQQVIALLK 158 (160)
T ss_pred CcEE--EEcCCCceeccccCCCCCceEEEEcCCccEEEEECC-----------CCCHHHHHHHHHHHh
Confidence 5443 34666677888887643 568899999999988543 478888877766654
No 373
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=94.46 E-value=0.024 Score=38.46 Aligned_cols=29 Identities=31% Similarity=0.812 Sum_probs=25.8
Q ss_pred ecCCCCCCC-CceeEecccC-CCCccccccc
Q 008845 492 SCDGCDEEG-RVWAFSCDEC-DFCLHPNCAL 520 (551)
Q Consensus 492 ~~~~c~~~g-~~~~~~~~~~-~~~~~~~~~~ 520 (551)
.||+|.+.. .|-.|.|.+| +|||...|..
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 599999655 4899999999 8999999986
No 374
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.44 E-value=0.23 Score=37.79 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=38.1
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC-Ccc
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS-GIP 421 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~-~~P 421 (551)
+..|..+|||+|.+....|++. ++.+-.++++.+++.. ..+.+.++.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALR-------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHH-------------------HHHHHHhCCCCccC
Confidence 4578899999999988776541 2555566776654322 2344555666 889
Q ss_pred eEEEECCCCcEE
Q 008845 422 MLVAIGPSGRTI 433 (551)
Q Consensus 422 ~~~lid~~G~i~ 433 (551)
.++ + +|+.+
T Consensus 54 ~v~-i--~g~~i 62 (75)
T cd03418 54 QIF-I--GDVHI 62 (75)
T ss_pred EEE-E--CCEEE
Confidence 765 4 45554
No 375
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.42 E-value=0.15 Score=45.38 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=38.0
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008845 334 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 383 (551)
Q Consensus 334 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d 383 (551)
+.+-.++++|+.|+...||+|..+.+.+.++.+++-+. ..+.+++..+-
T Consensus 7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-~~v~~~~~~~~ 55 (162)
T PF13462_consen 7 IGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-GKVKFVFRPVP 55 (162)
T ss_dssp ES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-TTEEEEEEESS
T ss_pred ecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-CceEEEEEEcc
Confidence 44444789999999999999999999999999998221 24888888774
No 376
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=94.32 E-value=0.47 Score=45.63 Aligned_cols=130 Identities=12% Similarity=0.127 Sum_probs=76.2
Q ss_pred cccee-cCCCCeeeccc-CCCCEEEEEEecCCChhHHhhhHHHH-HHHHHHhhc-CCCeEEEEEeCCCChHHHHHHHh--
Q 008845 321 LDFVV-GKNGGKVPVSD-LAGKTILLYFSAHWCPPCRAFLPKLI-DAYKKIKER-NESLEVVFISSDRDQTSFDEFFK-- 394 (551)
Q Consensus 321 ~~f~~-~~~g~~v~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~-~~~~~vv~vs~d~~~~~~~~~~~-- 394 (551)
|++.- +.+|+.+++.+ ++||+.||..+.+ .....+...+. ...+.|... ...+++|-|++-.+. ++.++.
T Consensus 102 P~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~--~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~--~k~~l~~~ 177 (252)
T PF05176_consen 102 PNLQGKTLAGNKVDTTDLLRGKVSLVCLFSS--AWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENW--LKSWLVKL 177 (252)
T ss_pred CCCccccCCCCCcccccccCCceEEEEEeeh--HHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHH--HHHHHHHH
Confidence 56655 67777776544 5789766666544 22223332222 233444332 236899999986442 222221
Q ss_pred ---cC-------CCcccccCchh--hHHHHHhcCCC--CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHH
Q 008845 395 ---GM-------PWLALPFGDAR--KASLSRKFKVS--GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 460 (551)
Q Consensus 395 ---~~-------~~~~~~~~~d~--~~~l~~~~~v~--~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 460 (551)
.+ .|-.+-+..+. ...+.+.+++. .+..+||+|++|+|+-...+ +.++++++.|.
T Consensus 178 ~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG-----------~At~~E~~~L~ 246 (252)
T PF05176_consen 178 FMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSG-----------PATPEELESLW 246 (252)
T ss_pred HhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccC-----------CCCHHHHHHHH
Confidence 11 13333233322 45677888875 56789999999999988543 36788888887
Q ss_pred HHHHH
Q 008845 461 GQYNE 465 (551)
Q Consensus 461 ~~l~~ 465 (551)
+.++.
T Consensus 247 k~~~~ 251 (252)
T PF05176_consen 247 KCVKG 251 (252)
T ss_pred HHHhc
Confidence 76653
No 377
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.31 E-value=0.16 Score=39.17 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=37.6
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcceE
Q 008845 344 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 423 (551)
Q Consensus 344 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~ 423 (551)
..|+.+|||+|......|++. ++.+-.++++.++... .++.+..+...+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~-------------------~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALR-------------------DEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHH-------------------HHHHHHhCCCCcCEE
Confidence 568899999999988877542 2344445555554221 245555678889997
Q ss_pred EEECCCCcEE
Q 008845 424 VAIGPSGRTI 433 (551)
Q Consensus 424 ~lid~~G~i~ 433 (551)
+ + +|+.+
T Consensus 54 ~-i--~g~~i 60 (79)
T TIGR02181 54 F-I--GDVHV 60 (79)
T ss_pred E-E--CCEEE
Confidence 4 4 35544
No 378
>PRK10638 glutaredoxin 3; Provisional
Probab=94.23 E-value=0.31 Score=38.06 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=39.0
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|..+||++|++....|.+. ++....++++.+.+. ...+.+..+...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~--------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAK--------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHH--------------------HHHHHHHhCCCCcCE
Confidence 4456789999999887777642 244555667655431 124556668888997
Q ss_pred EEEEcCCCeEEE
Q 008845 103 LVILDENGKVLS 114 (551)
Q Consensus 103 ~~lid~~G~i~~ 114 (551)
+++ +|+.+.
T Consensus 56 i~~---~g~~ig 64 (83)
T PRK10638 56 IFI---DAQHIG 64 (83)
T ss_pred EEE---CCEEEe
Confidence 744 466663
No 379
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.16 E-value=0.092 Score=46.20 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=31.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 382 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~ 382 (551)
++++++.|+.++||+|+.+.|.+.++..++. ++.+++...
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEeC
Confidence 6899999999999999999999988776653 255665544
No 380
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.09 E-value=0.13 Score=41.96 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=52.2
Q ss_pred Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC
Q 008845 20 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 98 (551)
Q Consensus 20 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 98 (551)
.+ ++|+=.++.||-.+.....|++.++...+. +.+.++.+-..++ -...+++.|||.
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~--~~~y~l~v~~~R~--------------------vSn~IAe~~~V~ 76 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE--IPVYYLDVIEYRP--------------------VSNAIAEDFGVK 76 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHH--------------------HHHHHHHHHT--
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc--ceEEEEEEEeCch--------------------hHHHHHHHhCCC
Confidence 45 788778999999999999999998887642 7788888776554 124689999998
Q ss_pred -CCcEEEEEcCCCeEEEc
Q 008845 99 -GIPHLVILDENGKVLSD 115 (551)
Q Consensus 99 -~~P~~~lid~~G~i~~~ 115 (551)
.-|-++++ ++|+++..
T Consensus 77 HeSPQ~ili-~~g~~v~~ 93 (105)
T PF11009_consen 77 HESPQVILI-KNGKVVWH 93 (105)
T ss_dssp --SSEEEEE-ETTEEEEE
T ss_pred cCCCcEEEE-ECCEEEEE
Confidence 46999999 89999985
No 381
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.04 E-value=0.22 Score=37.72 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=35.1
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcEE
Q 008845 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 103 (551)
Q Consensus 24 v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 103 (551)
..|..++||+|+.....|.+ . ++.+-.++++.+.+.. ..+. ..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~-~i~~~~~di~~~~~~~--------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H-GIAFEEINIDEQPEAI--------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C-CCceEEEECCCCHHHH--------------------HHHH-HcCCcccCEE
Confidence 45778999999998877764 2 3566677777655421 1233 3477889986
Q ss_pred EE
Q 008845 104 VI 105 (551)
Q Consensus 104 ~l 105 (551)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 54
No 382
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.96 E-value=0.29 Score=38.10 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=35.6
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
+..|..+||++|+.....|.+ .| +.+-.++++.+.+.. ..+ +..+...+|+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g-I~~~~idi~~~~~~~--------------------~~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG-FDFEMINVDRVPEAA--------------------ETL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC-CceEEEECCCCHHHH--------------------HHH-HHcCCCCcCE
Confidence 456778999999987766643 23 666677787655421 123 3357789998
Q ss_pred EEE
Q 008845 103 LVI 105 (551)
Q Consensus 103 ~~l 105 (551)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
No 383
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=93.92 E-value=0.3 Score=45.90 Aligned_cols=123 Identities=19% Similarity=0.334 Sum_probs=73.5
Q ss_pred cCce-eecccC-C-Cc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEe----CC--------------C---
Q 008845 9 LLLR-VKLDSL-K-GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS----GD--------------E--- 63 (551)
Q Consensus 9 ~~~~-v~l~~~-~-gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~----~d--------------~--- 63 (551)
+|+. .++.|+ + ++ +||+|.+-.||+=+.-++.++++++++.+.-++-+|.|. .| .
T Consensus 88 ~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sle 167 (237)
T PF00837_consen 88 DGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLE 167 (237)
T ss_pred CCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHH
Confidence 3444 777777 3 45 999999999999999999999999999875455566552 11 0
Q ss_pred CHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHHHH
Q 008845 64 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 142 (551)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 142 (551)
++-...+.+.+.......+.|.-. ......|+...- .++|| ++|++++.+| -|. +-+..+++++.+++
T Consensus 168 dR~~aA~~l~~~~~~~pi~vD~md-N~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg------~GP--~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 168 DRLRAAKLLKEEFPQCPIVVDTMD-NNFNKAYGALPE-RLYII-QDGKVVYKGG------PGP--FGYSPEELREWLEK 235 (237)
T ss_pred HHHHHHHHHHhhCCCCCEEEEccC-CHHHHHhCCCcc-eEEEE-ECCEEEEeCC------CCC--CcCCHHHHHHHHHh
Confidence 111222223333322222333332 345566764333 23555 6999998744 222 23456777776654
No 384
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.43 Score=41.11 Aligned_cols=113 Identities=18% Similarity=0.293 Sum_probs=75.2
Q ss_pred CCCEEEEEEe--cCCChhHHh-hhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCc-ccccCchhhHHHHH
Q 008845 338 AGKTILLYFS--AHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL-ALPFGDARKASLSR 413 (551)
Q Consensus 338 ~gk~vll~F~--a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~l~~ 413 (551)
+||.|+| |. +...|.|-. .+|.+.+++.+++.+. --+|+.||++ +.--...|.+..+.- .+.+..|-+.++.+
T Consensus 36 ~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kG-VD~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~geFTk 112 (165)
T COG0678 36 KGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKG-VDEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGNGEFTK 112 (165)
T ss_pred CCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcC-CceEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCCchhhh
Confidence 4665544 44 446688877 8999999999999763 2377788886 445566676666544 67777788888887
Q ss_pred hcC-----------CCCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHH
Q 008845 414 KFK-----------VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 461 (551)
Q Consensus 414 ~~~-----------v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~ 461 (551)
.+| +++...-.++ .+|.+..-+.-. ..-|+.-+..+.+++
T Consensus 113 ~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~-------p~~~~~vS~a~~mL~ 163 (165)
T COG0678 113 AMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEP-------PGDPFTVSSADTMLA 163 (165)
T ss_pred hcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecC-------CCCceeecCHHHHHh
Confidence 665 4566677888 789887764322 223455555554443
No 385
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.75 E-value=0.17 Score=41.14 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=36.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|..+|||+|.+....|.+ +. +.+-.+.+|.+++.. +....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~----~~-----i~~~~vdid~~~~~~----------------~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT----LG-----VNPAVHEIDKEPAGK----------------DIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH----cC-----CCCEEEEcCCCccHH----------------HHHHHHHHhcCCCCcCe
Confidence 566889999999997776543 22 233345555443210 01123555567889999
Q ss_pred EEEECCCCcEE
Q 008845 423 LVAIGPSGRTI 433 (551)
Q Consensus 423 ~~lid~~G~i~ 433 (551)
++ + +|+.+
T Consensus 65 Vf-i--~g~~i 72 (99)
T TIGR02189 65 VF-V--GGKLV 72 (99)
T ss_pred EE-E--CCEEE
Confidence 74 5 35544
No 386
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.69 E-value=0.26 Score=46.19 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=28.0
Q ss_pred CCCc-EEEEEecCCCHhhHhhhHHH---HHHHHHhcCC
Q 008845 18 LKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQ 51 (551)
Q Consensus 18 ~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~ 51 (551)
..|+ .+|.|+.-.||||+++.|.+ ..+.+.+.+.
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~ 72 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG 72 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC
Confidence 3578 89999999999999998876 6777777653
No 387
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.69 E-value=0.33 Score=36.78 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=39.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|..+|||.|++....|++ . ++.+..++++.+++. ..++.+..+-..+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~--gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K--GLPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C--CCceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 456888999999998777654 1 355666677655432 224556667778898
Q ss_pred EEEECCCCcEEE
Q 008845 423 LVAIGPSGRTIT 434 (551)
Q Consensus 423 ~~lid~~G~i~~ 434 (551)
+++ +|+.+.
T Consensus 55 v~i---~~~~iG 63 (73)
T cd03027 55 IFF---NEKLVG 63 (73)
T ss_pred EEE---CCEEEe
Confidence 754 355544
No 388
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.69 E-value=0.65 Score=38.62 Aligned_cols=62 Identities=11% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
.|.|+|-|...|-|.|..+-..|..++..+..- ..|..+.+|..+ .+.+.|++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~-----------------------~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVP-----------------------DFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhh-----------------------hhhhhhccc
Confidence 689999999999999999999999999888653 456666777554 578899999
Q ss_pred CcceEEEE
Q 008845 419 GIPMLVAI 426 (551)
Q Consensus 419 ~~P~~~li 426 (551)
..|+++++
T Consensus 77 ~p~tvmfF 84 (142)
T KOG3414|consen 77 DPPTVMFF 84 (142)
T ss_pred CCceEEEE
Confidence 99987655
No 389
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.56 E-value=0.34 Score=39.24 Aligned_cols=61 Identities=28% Similarity=0.431 Sum_probs=38.1
Q ss_pred EEEEEe----cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 22 IGLYFS----ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 22 vlv~F~----a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
|+|+-. +||||+|.+....|.+. +++...++++.+.+ . ...+.+..+.
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~-~-------------------~~~l~~~tg~ 65 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPE-I-------------------RQGIKEYSNW 65 (97)
T ss_pred EEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHH-H-------------------HHHHHHHhCC
Confidence 666544 38999999877666553 24455566665433 1 1345566677
Q ss_pred CCCcEEEEEcCCCeEE
Q 008845 98 MGIPHLVILDENGKVL 113 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~ 113 (551)
..+|.+++ +|+.+
T Consensus 66 ~tvP~vfi---~g~~i 78 (97)
T TIGR00365 66 PTIPQLYV---KGEFV 78 (97)
T ss_pred CCCCEEEE---CCEEE
Confidence 88998754 35554
No 390
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.53 E-value=0.34 Score=36.63 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=38.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|..+|||.|.+....|.+ . ++.+..++++.+.. ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~-----~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N-----GISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c-----CCCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 567889999999998776653 1 24555566665431 123455568889999
Q ss_pred EEEECCCCcEE
Q 008845 423 LVAIGPSGRTI 433 (551)
Q Consensus 423 ~~lid~~G~i~ 433 (551)
+ ++| |+.+
T Consensus 54 i-fi~--g~~i 61 (72)
T cd03029 54 V-FID--GELI 61 (72)
T ss_pred E-EEC--CEEE
Confidence 7 453 5554
No 391
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=0.17 Score=46.21 Aligned_cols=93 Identities=22% Similarity=0.487 Sum_probs=66.1
Q ss_pred ccceecCCCCeeecccC-CCCEEEE---EEecC----CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHH
Q 008845 321 LDFVVGKNGGKVPVSDL-AGKTILL---YFSAH----WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 392 (551)
Q Consensus 321 ~~f~~~~~g~~v~l~~~-~gk~vll---~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 392 (551)
.+++++....+.+|++| .|+..|| ++++| .|+.|...+..+.-....+... ++.++.||-- ..+++..|
T Consensus 53 K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~--dv~lv~VsRA-Pl~~l~~~ 129 (247)
T COG4312 53 KDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH--DVTLVAVSRA-PLEELVAY 129 (247)
T ss_pred ceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc--CceEEEEecC-cHHHHHHH
Confidence 46777444447788776 5553333 23344 6999999999997777777654 5888888753 45788999
Q ss_pred HhcCCCcccccCchhhHHHHHhcCC
Q 008845 393 FKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 393 ~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
-+.|+|- +|........+.+.|+|
T Consensus 130 k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 130 KRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HHhcCCc-ceeEeccCccccccccc
Confidence 9999997 88777666667777766
No 392
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.34 E-value=0.41 Score=38.09 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=37.2
Q ss_pred EEEEEec----CCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 22 IGLYFSA----SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 22 vlv~F~a----~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
|+|+-.+ ||||+|+.....|.+.. +.+..++++.+.+ . ...+.+..+.
T Consensus 10 vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~-~-------------------~~~l~~~~g~ 61 (90)
T cd03028 10 VVLFMKGTPEEPRCGFSRKVVQILNQLG--------VDFGTFDILEDEE-V-------------------RQGLKEYSNW 61 (90)
T ss_pred EEEEEcCCCCCCCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHH-H-------------------HHHHHHHhCC
Confidence 6654332 79999998776665542 3455556554432 1 1346666788
Q ss_pred CCCcEEEEEcCCCeEE
Q 008845 98 MGIPHLVILDENGKVL 113 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~ 113 (551)
..+|.++ + +|+.+
T Consensus 62 ~tvP~vf-i--~g~~i 74 (90)
T cd03028 62 PTFPQLY-V--NGELV 74 (90)
T ss_pred CCCCEEE-E--CCEEE
Confidence 8899874 4 36554
No 393
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=93.32 E-value=5.1 Score=39.74 Aligned_cols=308 Identities=16% Similarity=0.203 Sum_probs=140.2
Q ss_pred EEEEEecCCCHh--hHhh---hH-HHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhc
Q 008845 22 IGLYFSASWCGP--CQRF---TP-ILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 95 (551)
Q Consensus 22 vlv~F~a~wC~~--C~~~---~p-~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (551)
++|+|+.|--.. -++. .. .|+=+++-+..+ ++.+..|+...+. .+++++
T Consensus 54 l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~-gigfg~VD~~Kd~------------------------klAKKL 108 (383)
T PF01216_consen 54 LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDK-GIGFGMVDSKKDA------------------------KLAKKL 108 (383)
T ss_dssp EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGC-TEEEEEEETTTTH------------------------HHHHHH
T ss_pred EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcccc-CcceEEeccHHHH------------------------HHHHhc
Confidence 667788765322 2111 12 233334444444 5888888877664 599999
Q ss_pred CCCCCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHHHHHHHHHhhcccccccccCCcceeecCCCceeecc
Q 008845 96 KVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVS 175 (551)
Q Consensus 96 ~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 175 (551)
|+...++++++ ++|+++..+|.. +++.+-+++-.- .+.-+.+ +++.-+...+.
T Consensus 109 gv~E~~SiyVf-kd~~~IEydG~~------------saDtLVeFl~dl-----~edPVei---------In~~~e~~~Fe 161 (383)
T PF01216_consen 109 GVEEEGSIYVF-KDGEVIEYDGER------------SADTLVEFLLDL-----LEDPVEI---------INNKHELKAFE 161 (383)
T ss_dssp T--STTEEEEE-ETTEEEEE-S--------------SHHHHHHHHHHH-----HSSSEEE---------E-SHHHHHHHH
T ss_pred CccccCcEEEE-ECCcEEEecCcc------------CHHHHHHHHHHh-----cccchhh---------hcChhhhhhhh
Confidence 99999999999 899999864432 223232322110 0011111 11100000000
Q ss_pred cc-CCcEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhh
Q 008845 176 DL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 254 (551)
Q Consensus 176 ~~-~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~ 254 (551)
.. ..-.+.-||.....++. ..+.+++..++.- --.|+.++ +.+++.
T Consensus 162 ~ied~~klIGyFk~~~s~~y----k~FeeAAe~F~p~----IkFfAtfd-------------------------~~vAk~ 208 (383)
T PF01216_consen 162 RIEDDIKLIGYFKSEDSEHY----KEFEEAAEHFQPY----IKFFATFD-------------------------KKVAKK 208 (383)
T ss_dssp H--SS-EEEEE-SSTTSHHH----HHHHHHHHHCTTT----SEEEEE-S-------------------------HHHHHH
T ss_pred hcccceeEEEEeCCCCcHHH----HHHHHHHHhhcCc----eeEEEEec-------------------------chhhhh
Confidence 11 12344555655543333 3445566665542 12334433 356677
Q ss_pred cCcCCcceEEEECCC-CCcccccchhhhhhcCCCCCCCChhhHHHHHHHHHHHHhhhhhhhhhccCCccceecCCCCeee
Q 008845 255 FELSTLPTLVIIGPD-GKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVP 333 (551)
Q Consensus 255 f~v~~~P~lvi~~~~-gk~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g~~v~ 333 (551)
+++. .=.+-+..+- .+.+. .+.-|.+.+.+.++++.-+ .++++.+-.. .-|.+ -
T Consensus 209 L~lK-~nev~fyepF~~~pi~-----------ip~~p~~e~e~~~fi~~h~----rptlrkl~~~--~m~e~-------W 263 (383)
T PF01216_consen 209 LGLK-LNEVDFYEPFMDEPIT-----------IPGKPYTEEELVEFIEEHK----RPTLRKLRPE--DMFET-------W 263 (383)
T ss_dssp HT-S-TT-EEEE-TTSSSEEE-----------ESSSS--HHHHHHHHHHT-----S-SEEE--GG--GHHHH-------H
T ss_pred cCcc-ccceeeeccccCCCcc-----------CCCCCCCHHHHHHHHHHhc----hhHhhhCChh--hhhhh-------h
Confidence 7765 2222233221 11100 0112567777777765332 2333322110 00111 1
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH
Q 008845 334 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 413 (551)
Q Consensus 334 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 413 (551)
-++. +...+|.|--.--|.-.+++..|.++++...+. .++.||+|..|.-+- .. ...-+
T Consensus 264 edd~-~g~hIvaFaee~dpdG~efleilk~va~~nt~n-p~LsivwIDPD~fPl----------------lv---~yWE~ 322 (383)
T PF01216_consen 264 EDDI-DGIHIVAFAEEEDPDGFEFLEILKQVARDNTDN-PDLSIVWIDPDDFPL----------------LV---PYWEK 322 (383)
T ss_dssp HSSS-SSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT--TT--EEEE-GGG-HH----------------HH---HHHHH
T ss_pred cccC-CCceEEEEecCCCCchHHHHHHHHHHHHhcCcC-CceeEEEECCCCCch----------------hH---HHHHh
Confidence 1222 335566677777788999999999998887654 579999998875441 11 13456
Q ss_pred hcCCC-CcceEEEECCCCcE-EEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhccC
Q 008845 414 KFKVS-GIPMLVAIGPSGRT-ITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 470 (551)
Q Consensus 414 ~~~v~-~~P~~~lid~~G~i-~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~~~ 470 (551)
.|+|. .-|.+=++|-.-.- +-... .+ .-.....++|++-|...+.+.
T Consensus 323 tF~Idl~~PqIGvVnvtdadsvW~dm------~d----~~d~pt~~~LedWieDVlsg~ 371 (383)
T PF01216_consen 323 TFGIDLSRPQIGVVNVTDADSVWMDM------DD----DDDLPTAEELEDWIEDVLSGK 371 (383)
T ss_dssp HHTT-TTS-EEEEEETTTSEEEEC-S------TT----TSS---HHHHHHHHHHHHCTC
T ss_pred hcCccccCCceeEEeccccccchhcc------CC----cccCCcHHHHHHHHHHHhcCC
Confidence 77775 34888777643321 11110 01 112336677888888888654
No 394
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.26 E-value=0.16 Score=45.66 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=58.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
+..-|++.||-+.-..|+-+-..|+.+++.+-+ ..+|-|++...| -++..++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~P-----------------------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAP-----------------------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCc-----------------------eeeeeeee
Confidence 356899999999999999999999999888754 477777776554 47889999
Q ss_pred CCcceEEEECCCCcEEEcc
Q 008845 418 SGIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~~ 436 (551)
+.+|++.++ ++|+.+.+-
T Consensus 136 kVLP~v~l~-k~g~~~D~i 153 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDYV 153 (211)
T ss_pred eEeeeEEEE-EcCEEEEEE
Confidence 999999999 889887664
No 395
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.93 E-value=0.46 Score=35.94 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=35.0
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcceE
Q 008845 344 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 423 (551)
Q Consensus 344 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~ 423 (551)
..|..++||+|++....|.+ . ++.+-.++++.+++.. ..+. ..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~--~i~~~~~di~~~~~~~-------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H--GIAFEEINIDEQPEAI-------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C--CCceEEEECCCCHHHH-------------------HHHH-HcCCcccCEE
Confidence 46778999999998887753 1 3566667777664321 1232 3478889997
Q ss_pred EE
Q 008845 424 VA 425 (551)
Q Consensus 424 ~l 425 (551)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 55
No 396
>PRK10638 glutaredoxin 3; Provisional
Probab=92.81 E-value=0.58 Score=36.51 Aligned_cols=61 Identities=15% Similarity=0.282 Sum_probs=38.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
++.|..+|||+|++....|.+. ++.+..++++.+... ...+.+..+...+|.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~-------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAK-------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 4567789999999988776542 244445666654321 124556667888997
Q ss_pred EEEECCCCcEEE
Q 008845 423 LVAIGPSGRTIT 434 (551)
Q Consensus 423 ~~lid~~G~i~~ 434 (551)
+++ +|+.+.
T Consensus 56 i~~---~g~~ig 64 (83)
T PRK10638 56 IFI---DAQHIG 64 (83)
T ss_pred EEE---CCEEEe
Confidence 744 466654
No 397
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.77 E-value=0.21 Score=44.84 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=65.7
Q ss_pred CCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 19 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 19 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
+.. |++.||-+.-..|+-+-..|..+++.+-+ ..++.|++...+ -+..+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~P------------------------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAP------------------------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCc------------------------eeeeeeee
Confidence 344 99999999999999999999999998863 457777766443 37788999
Q ss_pred CCCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHH
Q 008845 98 MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMK 140 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 140 (551)
..+|++.++ ++|..+.+-.+ ..+.|.. --|+.+.++..+
T Consensus 136 kVLP~v~l~-k~g~~~D~iVG--F~dLGnk-DdF~te~LE~rL 174 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDYVVG--FTDLGNK-DDFTTETLENRL 174 (211)
T ss_pred eEeeeEEEE-EcCEEEEEEee--HhhcCCC-CcCcHHHHHHHH
Confidence 999999999 88877654110 1233432 135666666544
No 398
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.62 E-value=1.6 Score=38.31 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=11.0
Q ss_pred CChhHHhhhHHHHH
Q 008845 350 WCPPCRAFLPKLID 363 (551)
Q Consensus 350 wC~~C~~~~p~l~~ 363 (551)
+|++|.+....|++
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999987776654
No 399
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.56 E-value=0.022 Score=52.60 Aligned_cols=68 Identities=22% Similarity=0.507 Sum_probs=49.9
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008845 341 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 420 (551)
Q Consensus 341 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 420 (551)
-.++.|+|+|||.|....|.|++.+.--.+ -++.+..|.+-.++ -|.-+|-|...
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~np-----------------------gLsGRF~vtaL 95 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTNP-----------------------GLSGRFLVTAL 95 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEecc-----------------------ccceeeEEEec
Confidence 457889999999999999999876544333 24666666554443 36678889999
Q ss_pred ceEEEECCCCcEEE
Q 008845 421 PMLVAIGPSGRTIT 434 (551)
Q Consensus 421 P~~~lid~~G~i~~ 434 (551)
|++|=+ ++|..+.
T Consensus 96 ptIYHv-kDGeFrr 108 (248)
T KOG0913|consen 96 PTIYHV-KDGEFRR 108 (248)
T ss_pred ceEEEe-ecccccc
Confidence 999988 7887653
No 400
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.34 E-value=0.52 Score=37.49 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=38.5
Q ss_pred CCEEEEEEec----CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 339 GKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 339 gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
+++|+|+--. +|||+|.+....|.+.. +.+..++++.+.+ . ...+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~-~------------------~~~l~~~ 58 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILEDEE-V------------------RQGLKEY 58 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHH-H------------------HHHHHHH
Confidence 4556655432 79999999777665431 3444455554432 1 2356666
Q ss_pred cCCCCcceEEEECCCCcEE
Q 008845 415 FKVSGIPMLVAIGPSGRTI 433 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~ 433 (551)
.|...+|.++ + +|+.+
T Consensus 59 ~g~~tvP~vf-i--~g~~i 74 (90)
T cd03028 59 SNWPTFPQLY-V--NGELV 74 (90)
T ss_pred hCCCCCCEEE-E--CCEEE
Confidence 6888899974 4 46554
No 401
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=1 Score=39.80 Aligned_cols=101 Identities=21% Similarity=0.393 Sum_probs=68.5
Q ss_pred CceeecccCCCc-EEEEEe--cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH-------hhCC-CC
Q 008845 10 LLRVKLDSLKGK-IGLYFS--ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF-------SKMP-WL 78 (551)
Q Consensus 10 ~~~v~l~~~~gk-vlv~F~--a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~-------~~~~-~~ 78 (551)
-..+++.++.|. +.|.|. |..-|.|-.++..+++++-++... ++++++.++|. .++.+.|+ +..+ -.
T Consensus 21 ~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR-nvKlialS~d~-vesH~~Wi~DIks~~~~~~~~~ 98 (224)
T KOG0854|consen 21 VGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR-NVKLIALSVDD-VESHKDWIKDIKSYAKVKNHSV 98 (224)
T ss_pred ccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc-CceEEEeehhh-HHHHHHHHHHHHHHHhccCCCC
Confidence 356788899999 888888 567899999999999999999887 49999999994 33333333 3222 12
Q ss_pred ccc-cCChhhHHHHHhhcCC--------CC----CcEEEEEcCCCeEEE
Q 008845 79 AVP-FSDSETRDKLDELFKV--------MG----IPHLVILDENGKVLS 114 (551)
Q Consensus 79 ~~~-~~~~~~~~~l~~~~~v--------~~----~P~~~lid~~G~i~~ 114 (551)
.+| +.|.. .+++-.|+. .+ .-.++++|++.++.-
T Consensus 99 ~yPIIaD~~--rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirL 145 (224)
T KOG0854|consen 99 PYPIIADPN--RELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRL 145 (224)
T ss_pred CCCeecCCc--hhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEE
Confidence 233 23332 345555543 23 345689999888764
No 402
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.96 E-value=0.61 Score=37.71 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCEEEEEEe----cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 339 GKTILLYFS----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 339 gk~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
.+.|+|+-. ++|||+|.+....|.++ ++.+..++++.+++ . ...+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~-~------------------~~~l~~~ 62 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPE-I------------------RQGIKEY 62 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHH-H------------------HHHHHHH
Confidence 345555544 38999999987766542 23444556655532 1 1245556
Q ss_pred cCCCCcceEEEECCCCcEEE
Q 008845 415 FKVSGIPMLVAIGPSGRTIT 434 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~~ 434 (551)
.|...+|.+++ +|+.+.
T Consensus 63 tg~~tvP~vfi---~g~~iG 79 (97)
T TIGR00365 63 SNWPTIPQLYV---KGEFVG 79 (97)
T ss_pred hCCCCCCEEEE---CCEEEe
Confidence 67788898864 365543
No 403
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.78 Score=35.61 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=15.4
Q ss_pred EEEEecCCCHhhHhhhHHHH
Q 008845 23 GLYFSASWCGPCQRFTPILA 42 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~ 42 (551)
++.|.-++||+|++....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45577899999998766655
No 404
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=1.1 Score=36.75 Aligned_cols=64 Identities=28% Similarity=0.452 Sum_probs=38.9
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCc
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 101 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 101 (551)
-+|.|..+||++|.....-|.+ +.. ...++-++-+.+..+++++ +.+.-+-+.+|
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~-------------------l~~~tg~~tvP 69 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKA-------------------LKKLTGQRTVP 69 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHH-------------------HHHhcCCCCCC
Confidence 4566999999999985544444 322 3455555544444444443 44444566889
Q ss_pred EEEEEcCCCeEE
Q 008845 102 HLVILDENGKVL 113 (551)
Q Consensus 102 ~~~lid~~G~i~ 113 (551)
.+|| +|+.+
T Consensus 70 ~vFI---~Gk~i 78 (104)
T KOG1752|consen 70 NVFI---GGKFI 78 (104)
T ss_pred EEEE---CCEEE
Confidence 8766 47666
No 405
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.29 E-value=0.26 Score=44.62 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=33.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEe
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 381 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs 381 (551)
.++++++.|+...||+|+.+.+.+.++.++++++ +.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcC
Confidence 4789999999999999999999999998887543 5555444
No 406
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=91.25 E-value=1.4 Score=37.34 Aligned_cols=58 Identities=16% Similarity=0.360 Sum_probs=45.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 339 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 339 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
.|.|+|-|...|-+.|..+-..|.+++++.+.- ..|..++++.-+ .+.+.|.+.
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vp-----------------------dfn~~yel~ 73 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVP-----------------------DFNQMYELY 73 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTH-----------------------CCHHHTTS-
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccch-----------------------hhhcccccC
Confidence 799999999999999999999999999988753 566677777655 366788888
Q ss_pred CcceE
Q 008845 419 GIPML 423 (551)
Q Consensus 419 ~~P~~ 423 (551)
.|.+
T Consensus 74 -dP~t 77 (133)
T PF02966_consen 74 -DPCT 77 (133)
T ss_dssp -SSEE
T ss_pred -CCeE
Confidence 6753
No 407
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=91.11 E-value=0.57 Score=39.52 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=52.7
Q ss_pred ceecccCceeecc--cCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCcc
Q 008845 4 MKIYELLLRVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAV 80 (551)
Q Consensus 4 ~~~~~~~~~v~l~--~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 80 (551)
++.|.++..|..+ +-..| |+|-|.-.|-+.|.++-..|.+++++.+.- ..|..+++++-++
T Consensus 2 L~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~--a~IY~vDi~~Vpd-------------- 65 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF--AVIYLVDIDEVPD-------------- 65 (133)
T ss_dssp SEEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--EEEEEEETTTTHC--------------
T ss_pred CcccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc--eEEEEEEcccchh--------------
Confidence 4556666655533 22567 999999999999999999999999999843 4566677775433
Q ss_pred ccCChhhHHHHHhhcCCCCCcEEEEE
Q 008845 81 PFSDSETRDKLDELFKVMGIPHLVIL 106 (551)
Q Consensus 81 ~~~~~~~~~~l~~~~~v~~~P~~~li 106 (551)
..+.|.+. .|.++++
T Consensus 66 ----------fn~~yel~-dP~tvmF 80 (133)
T PF02966_consen 66 ----------FNQMYELY-DPCTVMF 80 (133)
T ss_dssp ----------CHHHTTS--SSEEEEE
T ss_pred ----------hhcccccC-CCeEEEE
Confidence 66778888 7776443
No 408
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=90.69 E-value=0.16 Score=34.73 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=28.8
Q ss_pred eecCCCCCCCCceeEecccCC-CCcccccccCC
Q 008845 491 YSCDGCDEEGRVWAFSCDECD-FCLHPNCALGE 522 (551)
Q Consensus 491 ~~~~~c~~~g~~~~~~~~~~~-~~~~~~~~~~~ 522 (551)
|.|+.|.....+-.|+|.+|. |||-..|....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 679999998888999999998 99999999754
No 409
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=90.07 E-value=0.33 Score=34.24 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=29.3
Q ss_pred CCceecCCCCCCC---CceeEecccCCCCcccccccCCC
Q 008845 488 CGVYSCDGCDEEG---RVWAFSCDECDFCLHPNCALGED 523 (551)
Q Consensus 488 ~~~~~~~~c~~~g---~~~~~~~~~~~~~~~~~~~~~~~ 523 (551)
..+-.|+-|.+.- ..-+|+|..|.+-+|.+|.....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 6788999999987 56899999999999999996543
No 410
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.80 E-value=1.5 Score=34.11 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=41.8
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
|+.|..+.|+-|......|.++.... .+.+-.|+++.++ .+.+.|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~d~-----------------------~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDEDP-----------------------ELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTTTH-----------------------HHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCCCH-----------------------HHHHHhcC-CCCE
Confidence 67788999999999888776543322 4889999998765 57889995 7898
Q ss_pred EEEEC
Q 008845 423 LVAIG 427 (551)
Q Consensus 423 ~~lid 427 (551)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 66654
No 411
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=1.3 Score=36.32 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=36.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
+|.|.-+||+.|.+....|. .+.. ...++-++-+.+..++++ .+.+.-+-+.+|.
T Consensus 16 VVifSKs~C~~c~~~k~ll~----~~~v---~~~vvELD~~~~g~eiq~------------------~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLS----DLGV---NPKVVELDEDEDGSEIQK------------------ALKKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHHHHHH----hCCC---CCEEEEccCCCCcHHHHH------------------HHHHhcCCCCCCE
Confidence 45688999999999444433 3332 245544444333333322 3444445668898
Q ss_pred EEEECCCCcEE
Q 008845 423 LVAIGPSGRTI 433 (551)
Q Consensus 423 ~~lid~~G~i~ 433 (551)
+|| +|+-+
T Consensus 71 vFI---~Gk~i 78 (104)
T KOG1752|consen 71 VFI---GGKFI 78 (104)
T ss_pred EEE---CCEEE
Confidence 877 57776
No 412
>PRK10824 glutaredoxin-4; Provisional
Probab=89.54 E-value=1.3 Score=37.02 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=36.1
Q ss_pred EEEEEec----CCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCC
Q 008845 22 IGLYFSA----SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 97 (551)
Q Consensus 22 vlv~F~a----~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 97 (551)
|+|+--. ||||+|++....|.++- +....++++.+.+ ++ ..+.+.-+.
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~-~~-------------------~~l~~~sg~ 68 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPD-IR-------------------AELPKYANW 68 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHH-HH-------------------HHHHHHhCC
Confidence 6665443 69999998877776542 2233345554433 22 234455577
Q ss_pred CCCcEEEEEcCCCeEE
Q 008845 98 MGIPHLVILDENGKVL 113 (551)
Q Consensus 98 ~~~P~~~lid~~G~i~ 113 (551)
..+|.+|+ +|+.+
T Consensus 69 ~TVPQIFI---~G~~I 81 (115)
T PRK10824 69 PTFPQLWV---DGELV 81 (115)
T ss_pred CCCCeEEE---CCEEE
Confidence 78888766 46666
No 413
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=2 Score=41.85 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=53.5
Q ss_pred CCcEEEEEEecCC----CccchhhhHHHHHHHHHHhcCCCce---EEEEeecccCHHHHHHHhcCCCCccccCCchhHHH
Q 008845 178 EGKTIGLYFSMSS----YKASAEFTPRLVEVYEKLKGKGESF---EIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 250 (551)
Q Consensus 178 ~gk~v~l~f~~~~----~~~c~~~~~~~~~~~~~~~~~~~~~---~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~ 250 (551)
+.-.+.++|.+.. |+.|..+..++.-++.+.+..+... .+.|..+|-++ .++
T Consensus 59 rNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e---------------------~p~ 117 (331)
T KOG2603|consen 59 RNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE---------------------SPQ 117 (331)
T ss_pred CCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---------------------cHH
Confidence 3345778888764 9999999999988888887654332 36666666554 457
Q ss_pred HHhhcCcCCcceEEEECCC
Q 008845 251 LARYFELSTLPTLVIIGPD 269 (551)
Q Consensus 251 l~~~f~v~~~P~lvi~~~~ 269 (551)
+.+.|+++..|+++++.|.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~ 136 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPA 136 (331)
T ss_pred HHHHhcccCCCeEEEeCCC
Confidence 7899999999999999864
No 414
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.44 E-value=0.82 Score=49.34 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=47.6
Q ss_pred cccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHh
Q 008845 15 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 93 (551)
Q Consensus 15 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (551)
++.+.++ -+..|.++.||+|......+++++.... ++..-.|+.... .++.+
T Consensus 112 ~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~------------------------~~~~~ 164 (515)
T TIGR03140 112 IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALF------------------------QDEVE 164 (515)
T ss_pred HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhC------------------------HHHHH
Confidence 4455566 6778999999999988888888876654 455544444433 34889
Q ss_pred hcCCCCCcEEEE
Q 008845 94 LFKVMGIPHLVI 105 (551)
Q Consensus 94 ~~~v~~~P~~~l 105 (551)
.|++.++|++++
T Consensus 165 ~~~v~~VP~~~i 176 (515)
T TIGR03140 165 ALGIQGVPAVFL 176 (515)
T ss_pred hcCCcccCEEEE
Confidence 999999999986
No 415
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=89.43 E-value=2.6 Score=36.13 Aligned_cols=92 Identities=21% Similarity=0.387 Sum_probs=57.3
Q ss_pred CEEEEEEecC--CChh-H-HhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008845 340 KTILLYFSAH--WCPP-C-RAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 415 (551)
Q Consensus 340 k~vll~F~a~--wC~~-C-~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 415 (551)
+.-+|.|.-+ .|.. + ......|.+++++++++ .+.+++++.+... .+.+.|
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~~-----------------------~~~~~f 75 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK--PWGWLWTEAGAQL-----------------------DLEEAL 75 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEeCcccH-----------------------HHHHHc
Confidence 3556666432 2433 3 34567788888888765 3677777776543 378899
Q ss_pred CCC--CcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhccC
Q 008845 416 KVS--GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 470 (551)
Q Consensus 416 ~v~--~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~~~ 470 (551)
|+. ++|++++++.++. .+....+ +++.+. |.+.+++.+.+.
T Consensus 76 gl~~~~~P~v~i~~~~~~-KY~~~~~----------~~t~e~---i~~Fv~~~l~Gk 118 (130)
T cd02983 76 NIGGFGYPAMVAINFRKM-KFATLKG----------SFSEDG---INEFLRELSYGR 118 (130)
T ss_pred CCCccCCCEEEEEecccC-ccccccC----------ccCHHH---HHHHHHHHHcCC
Confidence 985 4999999998765 4441111 255544 455566666553
No 416
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=2.1 Score=33.18 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=16.0
Q ss_pred EEEEecCCChhHHhhhHHHH
Q 008845 343 LLYFSAHWCPPCRAFLPKLI 362 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~ 362 (551)
++.|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45678899999999877665
No 417
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=88.36 E-value=1.9 Score=39.83 Aligned_cols=99 Identities=21% Similarity=0.338 Sum_probs=66.9
Q ss_pred ceeecccC-CCc--EEEEEe------cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccc
Q 008845 11 LRVKLDSL-KGK--IGLYFS------ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 81 (551)
Q Consensus 11 ~~v~l~~~-~gk--vlv~F~------a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 81 (551)
.+++|+++ .|+ ++|+.+ ..-|+.|...+..+......+... ++.++.|+-. ..+.+..|-+.++|...-
T Consensus 56 G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r-d~tfa~vSra-P~~~i~afk~rmGW~~pw 133 (211)
T PF05988_consen 56 GPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR-DTTFAVVSRA-PLEKIEAFKRRMGWTFPW 133 (211)
T ss_pred CcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC-CceEEEEeCC-CHHHHHHHHHhcCCCceE
Confidence 45888776 777 666633 367999999999997777777765 4777777655 567899999999998444
Q ss_pred cCChhhHHHHHhhcCC-----CCCcEEEEEcCC-CeEE
Q 008845 82 FSDSETRDKLDELFKV-----MGIPHLVILDEN-GKVL 113 (551)
Q Consensus 82 ~~~~~~~~~l~~~~~v-----~~~P~~~lid~~-G~i~ 113 (551)
++... ......|++ ...|.+-+|-++ |+|.
T Consensus 134 ~Ss~g--s~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vf 169 (211)
T PF05988_consen 134 YSSYG--SDFNYDFGVSFDEGGEMPGLSVFLRDGGRVF 169 (211)
T ss_pred EEcCC--CcccccccceeccCCCceeEEEEEEcCCEEE
Confidence 44333 235556776 456666444344 4444
No 418
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.89 E-value=2.8 Score=31.44 Aligned_cols=73 Identities=16% Similarity=0.317 Sum_probs=44.9
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcceE
Q 008845 344 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 423 (551)
Q Consensus 344 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~ 423 (551)
+.|++-.||.|......|.++. +..=+|.+-.+-..+++|+.-... .+.-+-.+.+|--|+|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~---------v~yd~VeIt~Sm~NlKrFl~lRDs-------~~~Fd~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN---------VDYDFVEITESMANLKRFLHLRDS-------RPEFDEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC---------CCceeeehhhhhhhHHHHHhhhcc-------chhHHhhhhcCcccceEE
Confidence 5699999999988777665432 222334444555677777652210 001123567777899998
Q ss_pred EEECCCCcEEE
Q 008845 424 VAIGPSGRTIT 434 (551)
Q Consensus 424 ~lid~~G~i~~ 434 (551)
.+ ++|+++-
T Consensus 69 l~--~d~~vVl 77 (85)
T COG4545 69 LT--DDGKVVL 77 (85)
T ss_pred Ee--CCCcEEE
Confidence 76 5677765
No 419
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=85.96 E-value=0.45 Score=28.08 Aligned_cols=23 Identities=26% Similarity=0.584 Sum_probs=21.2
Q ss_pred ecCCCCCCCCceeEecccCCCCc
Q 008845 492 SCDGCDEEGRVWAFSCDECDFCL 514 (551)
Q Consensus 492 ~~~~c~~~g~~~~~~~~~~~~~~ 514 (551)
.|+.|+.+...=+-.|+.|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48999999999999999999986
No 420
>PRK10824 glutaredoxin-4; Provisional
Probab=85.91 E-value=1.6 Score=36.50 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=36.2
Q ss_pred CCEEEEEEec----CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHh
Q 008845 339 GKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 414 (551)
Q Consensus 339 gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 414 (551)
...|+|+--. ||||+|++....|.++ .- .+.+ +.++.+.+ .+ ..+.+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----~i---~~~~--idi~~d~~-~~------------------~~l~~~ 65 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC----GE---RFAY--VDILQNPD-IR------------------AELPKY 65 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc----CC---CceE--EEecCCHH-HH------------------HHHHHH
Confidence 3455554443 6999999987766553 21 1333 45554432 22 234444
Q ss_pred cCCCCcceEEEECCCCcEE
Q 008845 415 FKVSGIPMLVAIGPSGRTI 433 (551)
Q Consensus 415 ~~v~~~P~~~lid~~G~i~ 433 (551)
-|-..+|.+|| +|+-+
T Consensus 66 sg~~TVPQIFI---~G~~I 81 (115)
T PRK10824 66 ANWPTFPQLWV---DGELV 81 (115)
T ss_pred hCCCCCCeEEE---CCEEE
Confidence 46677888776 56655
No 421
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=3.4 Score=31.01 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=45.9
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcEE
Q 008845 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 103 (551)
Q Consensus 24 v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 103 (551)
+.|+|.-||.|......|+.+. +..=+|.+..+-..+++|+.-.... ..=+-.+.+|--|+|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~--------v~yd~VeIt~Sm~NlKrFl~lRDs~--------~~Fd~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN--------VDYDFVEITESMANLKRFLHLRDSR--------PEFDEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC--------CCceeeehhhhhhhHHHHHhhhccc--------hhHHhhhhcCcccceEE
Confidence 4699999999987666655442 3334556666777788887643211 00123356777899987
Q ss_pred EEEcCCCeEEE
Q 008845 104 VILDENGKVLS 114 (551)
Q Consensus 104 ~lid~~G~i~~ 114 (551)
.+ .+|+++-
T Consensus 69 l~--~d~~vVl 77 (85)
T COG4545 69 LT--DDGKVVL 77 (85)
T ss_pred Ee--CCCcEEE
Confidence 66 4676664
No 422
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.05 E-value=9.6 Score=37.27 Aligned_cols=87 Identities=15% Similarity=0.264 Sum_probs=60.1
Q ss_pred cCCCCeeecccCCCCEEEEEEecC----CChhHHhhhHHHHHHHHHHhhcC---CCeEEEEEeCCCChHHHHHHHhcCCC
Q 008845 326 GKNGGKVPVSDLAGKTILLYFSAH----WCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPW 398 (551)
Q Consensus 326 ~~~g~~v~l~~~~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~~---~~~~vv~vs~d~~~~~~~~~~~~~~~ 398 (551)
+.+...+..+..++=.+++.|.|. .|.-|+.+..++.-+++.+.... .+-.+.+..+|-+.
T Consensus 47 ~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e------------ 114 (331)
T KOG2603|consen 47 DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE------------ 114 (331)
T ss_pred CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc------------
Confidence 344444544555565678888864 69999999999999999887542 22355555555332
Q ss_pred cccccCchhhHHHHHhcCCCCcceEEEECC-CCcEE
Q 008845 399 LALPFGDARKASLSRKFKVSGIPMLVAIGP-SGRTI 433 (551)
Q Consensus 399 ~~~~~~~d~~~~l~~~~~v~~~P~~~lid~-~G~i~ 433 (551)
..++.+.++++..|+++++.| .|+..
T Consensus 115 ---------~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 ---------SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred ---------cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 136889999999999999955 45555
No 423
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=84.86 E-value=15 Score=30.88 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=55.5
Q ss_pred ecccCCCc--EEEEEe-cCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHH
Q 008845 14 KLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 90 (551)
Q Consensus 14 ~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (551)
.|++++++ +||.|- .+--+.=+.++..|.+....+.+. ++.++.+..+..... ....+......
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR-di~v~~i~~~~~~~~------------~~~~~~~~~~~ 68 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER-DIVVIVITGDGARSP------------GKPLSPEDIQA 68 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC-ceEEEEEeCCccccc------------cCcCCHHHHHH
Confidence 36677777 666665 334456677788888877777776 576666643322110 01122223357
Q ss_pred HHhhcCCCC-CcEEEEEcCCCeEEEc
Q 008845 91 LDELFKVMG-IPHLVILDENGKVLSD 115 (551)
Q Consensus 91 l~~~~~v~~-~P~~~lid~~G~i~~~ 115 (551)
+.+.|++.. .-++++++++|.+..+
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 888998753 3567999999988764
No 424
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=84.74 E-value=2.8 Score=32.53 Aligned_cols=56 Identities=36% Similarity=0.405 Sum_probs=42.1
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcE
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 102 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 102 (551)
++.|..+.|+-|......|.++.... .+.+..|+++.+.+ +..+|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~------------------------l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPE------------------------LFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHH------------------------HHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHH------------------------HHHHhcC-CCCE
Confidence 56788999999998888887754333 48899999996644 8888994 7998
Q ss_pred EEEEc
Q 008845 103 LVILD 107 (551)
Q Consensus 103 ~~lid 107 (551)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 66643
No 425
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=84.66 E-value=0.67 Score=32.14 Aligned_cols=31 Identities=35% Similarity=0.754 Sum_probs=27.7
Q ss_pred eecCCCCCCCCc-eeEecccC-CCCcccccccC
Q 008845 491 YSCDGCDEEGRV-WAFSCDEC-DFCLHPNCALG 521 (551)
Q Consensus 491 ~~~~~c~~~g~~-~~~~~~~~-~~~~~~~~~~~ 521 (551)
|.|+.|...... -.|.|.+| +|||=..|...
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence 579999998877 89999999 99999999963
No 426
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=84.50 E-value=6.5 Score=31.88 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhcCCCceEEEE-eecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCcC-CcceEEEECCC--CCc
Q 008845 197 FTPRLVEVYEKLKGKGESFEIVL-ISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS-TLPTLVIIGPD--GKT 272 (551)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~iv~-v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v~-~~P~lvi~~~~--gk~ 272 (551)
+.|...+.+++.+.+++.-.++| +..+.+. ...|.++.++. ..|.++++|.- +++
T Consensus 37 lQpiAd~~~aka~~k~~dap~~f~~a~ede~---------------------tdsLRDf~nL~d~~P~LviLDip~r~~~ 95 (116)
T cd03071 37 IQPIAEKIIAKYKAKEEEAPLLFFVAGEDDM---------------------TDSLRDYTNLPEAAPLLTILDMSARAKY 95 (116)
T ss_pred HHHHHHHHHHHhhccCCCcceeeeeeccchH---------------------HHHHHHhcCCCccCceEEEEeccccceE
Confidence 44555566777777776665554 5555543 45566777886 58999999843 455
Q ss_pred ccccchhhhhhcCCCCCCCChhhHHHHHHHH
Q 008845 273 LHSNVAEAIEEHGVGAFPFTPEKFAELAEIQ 303 (551)
Q Consensus 273 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 303 (551)
+.+. + ..|++.+++|+..+
T Consensus 96 v~~~--e----------eIT~e~~~~fv~~y 114 (116)
T cd03071 96 VMDV--E----------EITPAIVEAFVSDF 114 (116)
T ss_pred eCch--H----------hcCHHHHHHHHHHh
Confidence 4443 1 35888888888765
No 427
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=84.42 E-value=0.74 Score=31.79 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCceecCCCCCCCCc---eeEecccCCCCcccccccCCC
Q 008845 488 CGVYSCDGCDEEGRV---WAFSCDECDFCLHPNCALGED 523 (551)
Q Consensus 488 ~~~~~~~~c~~~g~~---~~~~~~~~~~~~~~~~~~~~~ 523 (551)
.++-.|+-|...-.+ .+|.|..|.+-+|++|+....
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 9 FKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 356679999887665 899999999999999997543
No 428
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=83.92 E-value=1.1 Score=41.94 Aligned_cols=41 Identities=27% Similarity=0.450 Sum_probs=30.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEe
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFIS 381 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~vv~vs 381 (551)
.|++.++.|+.-.||+|..+.+.+ ..+.+.+.++ +.++.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKYH 79 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEec
Confidence 478889999999999999999866 6666666543 4555443
No 429
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=83.12 E-value=0.78 Score=32.72 Aligned_cols=25 Identities=24% Similarity=0.704 Sum_probs=17.1
Q ss_pred CceecCCCCCC---------CCceeEecccCCCC
Q 008845 489 GVYSCDGCDEE---------GRVWAFSCDECDFC 513 (551)
Q Consensus 489 ~~~~~~~c~~~---------g~~~~~~~~~~~~~ 513 (551)
-.|.|+.|++. -.+-.|.|++|+|.
T Consensus 24 ~~F~CPnCG~~~I~RC~~CRk~~~~Y~CP~CGF~ 57 (59)
T PRK14890 24 VKFLCPNCGEVIIYRCEKCRKQSNPYTCPKCGFE 57 (59)
T ss_pred CEeeCCCCCCeeEeechhHHhcCCceECCCCCCc
Confidence 35667777654 23467999999884
No 430
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=82.72 E-value=0.34 Score=31.12 Aligned_cols=18 Identities=28% Similarity=0.731 Sum_probs=12.3
Q ss_pred eEecccCCCCcccccccC
Q 008845 504 AFSCDECDFCLHPNCALG 521 (551)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~ 521 (551)
..+|..|+..+|..|-=.
T Consensus 4 ll~C~~C~v~VH~~CYGv 21 (36)
T PF13831_consen 4 LLFCDNCNVAVHQSCYGV 21 (36)
T ss_dssp EEE-SSS--EEEHHHHT-
T ss_pred eEEeCCCCCcCChhhCCc
Confidence 578999999999999844
No 431
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=81.35 E-value=14 Score=31.06 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=51.5
Q ss_pred cccCCCCEEEEEEecC--CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHH
Q 008845 334 VSDLAGKTILLYFSAH--WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 411 (551)
Q Consensus 334 l~~~~gk~vll~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l 411 (551)
|++++++.=+|..+|| .-+.=+.+...|.+....+.++ ++.++.+.-+.... ..-+........+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~-----------~~~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARS-----------PGKPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCcccc-----------ccCcCCHHHHHHH
Confidence 5566676544445554 3334555666666655566665 45555553322211 1122233344578
Q ss_pred HHhcCCC-CcceEEEECCCCcEEEc
Q 008845 412 SRKFKVS-GIPMLVAIGPSGRTITK 435 (551)
Q Consensus 412 ~~~~~v~-~~P~~~lid~~G~i~~~ 435 (551)
.+.|++. +.-+++||+++|.+-.+
T Consensus 70 r~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 70 RKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHhCCCCCceEEEEEeCCCcEEEe
Confidence 8888875 33578999999998877
No 432
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=81.25 E-value=1 Score=31.08 Aligned_cols=31 Identities=32% Similarity=0.805 Sum_probs=27.3
Q ss_pred eecCCCCC-CCCceeEecccCC---CCcccccccC
Q 008845 491 YSCDGCDE-EGRVWAFSCDECD---FCLHPNCALG 521 (551)
Q Consensus 491 ~~~~~c~~-~g~~~~~~~~~~~---~~~~~~~~~~ 521 (551)
|.|++|.. .-.|-.|+|..|. |||=..|...
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 67999998 6678999999998 9999999864
No 433
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=80.40 E-value=6 Score=32.82 Aligned_cols=52 Identities=10% Similarity=0.154 Sum_probs=36.4
Q ss_pred hHHhhhHHHHHHHHHHh-hcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCC----cceEEEEC
Q 008845 353 PCRAFLPKLIDAYKKIK-ERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG----IPMLVAIG 427 (551)
Q Consensus 353 ~C~~~~p~l~~l~~~~~-~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~----~P~~~lid 427 (551)
.-......+.+++++++ ++ +.++.++.+... ...+.||+.. .|.+.+++
T Consensus 32 ~~~~~~~~~~~vAk~fk~gk---i~Fv~~D~~~~~-----------------------~~l~~fgl~~~~~~~P~~~i~~ 85 (111)
T cd03073 32 GTNYWRNRVLKVAKDFPDRK---LNFAVADKEDFS-----------------------HELEEFGLDFSGGEKPVVAIRT 85 (111)
T ss_pred HHHHHHHHHHHHHHHCcCCe---EEEEEEcHHHHH-----------------------HHHHHcCCCcccCCCCEEEEEe
Confidence 34567778888888888 45 566555443221 3678899974 89999998
Q ss_pred CCC
Q 008845 428 PSG 430 (551)
Q Consensus 428 ~~G 430 (551)
.++
T Consensus 86 ~~~ 88 (111)
T cd03073 86 AKG 88 (111)
T ss_pred CCC
Confidence 765
No 434
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=79.96 E-value=0.81 Score=32.29 Aligned_cols=28 Identities=29% Similarity=0.751 Sum_probs=23.5
Q ss_pred ceecCCCCCCC---CceeEecccCCCCcccc
Q 008845 490 VYSCDGCDEEG---RVWAFSCDECDFCLHPN 517 (551)
Q Consensus 490 ~~~~~~c~~~g---~~~~~~~~~~~~~~~~~ 517 (551)
.|+|.+|...- ++=+.+|.+|+|++..+
T Consensus 20 iYiCgdC~~en~lk~~D~irCReCG~RIlyK 50 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRGDVIRCRECGYRILYK 50 (62)
T ss_pred EEEeccccccccccCCCcEehhhcchHHHHH
Confidence 49999998775 55789999999998654
No 435
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=79.15 E-value=38 Score=29.85 Aligned_cols=115 Identities=14% Similarity=0.273 Sum_probs=60.2
Q ss_pred ceeecccCCCcEEEEEecCCCHhhHhhhHHHHH-HHHH-hcCCCCEEEEE-EeCCCC----HHHHHHHH----hhCCCCc
Q 008845 11 LRVKLDSLKGKIGLYFSASWCGPCQRFTPILAE-VYNE-LSRQGDFEVIF-VSGDED----DEAFKGYF----SKMPWLA 79 (551)
Q Consensus 11 ~~v~l~~~~gkvlv~F~a~wC~~C~~~~p~l~~-~~~~-~~~~~~~~vv~-v~~d~~----~~~~~~~~----~~~~~~~ 79 (551)
+..+.+.+.|||-|.+|-..-+.-+.+...|.+ +.+. +... ++.... |+.|+. .--++..+ ++++|..
T Consensus 28 ~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d-~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~ 106 (160)
T PF09695_consen 28 QPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD-KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQ 106 (160)
T ss_pred cccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc-ceeEEEEEecccccccchHHHHHHHHHhhhhCCCcE
Confidence 345677889994444554333444555444444 4333 3333 354443 355532 22223333 3344444
Q ss_pred cccCChhhHHHHHhhcCCCC-CcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHH
Q 008845 80 VPFSDSETRDKLDELFKVMG-IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMK 140 (551)
Q Consensus 80 ~~~~~~~~~~~l~~~~~v~~-~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 140 (551)
+.+ |... .+.+.++... --.++++|++|+++.. ..| ..+++++++++
T Consensus 107 ~vl-D~~G--~~~~aW~L~~~~SaiiVlDK~G~V~F~-------k~G----~Ls~~Ev~qVi 154 (160)
T PF09695_consen 107 FVL-DSNG--VVRKAWQLQEESSAIIVLDKQGKVQFV-------KEG----ALSPAEVQQVI 154 (160)
T ss_pred EEE-cCCC--ceeccccCCCCCceEEEEcCCccEEEE-------ECC----CCCHHHHHHHH
Confidence 333 3332 3566677654 3668899999999975 222 24666666654
No 436
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=79.08 E-value=3.7 Score=42.81 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=36.5
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcce
Q 008845 343 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 422 (551)
Q Consensus 343 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~ 422 (551)
|+.|..+|||+|.+....|.+. ++..-.|++|.++. ..++..+.+ ...+.+..|.+.+|.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~~~-~~~~~~~~~----------~~~~~~~~g~~tvP~ 63 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDDVK-RAEFYAEVN----------KNILLVEEHIRTVPQ 63 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCChh-HHHHHHHHh----------hccccccCCCCccCe
Confidence 5678999999999977665441 24444566665532 222222111 001334467888998
Q ss_pred EEE
Q 008845 423 LVA 425 (551)
Q Consensus 423 ~~l 425 (551)
+++
T Consensus 64 ifi 66 (410)
T PRK12759 64 IFV 66 (410)
T ss_pred EEE
Confidence 866
No 437
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=78.90 E-value=2.1 Score=35.16 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.8
Q ss_pred HHHHHhcCCCCcceEEEECCCCcEEEc
Q 008845 409 ASLSRKFKVSGIPMLVAIGPSGRTITK 435 (551)
Q Consensus 409 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 435 (551)
..+..+||+..+|+++++ ++|+.+..
T Consensus 72 ~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 379999999999999999 78887765
No 438
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=78.31 E-value=6.2 Score=41.14 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=23.9
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCH
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~ 65 (551)
++.|..||||+|++....|.+ .| ++...|+++.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~g-i~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------ND-IPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CC-CCeEEEECCCCh
Confidence 566889999999986655554 23 555566776544
No 439
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=78.07 E-value=2.4 Score=28.60 Aligned_cols=33 Identities=30% Similarity=0.616 Sum_probs=28.9
Q ss_pred CceecCCCCCCCCceeEecccC-CCCcccccccC
Q 008845 489 GVYSCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 521 (551)
Q Consensus 489 ~~~~~~~c~~~g~~~~~~~~~~-~~~~~~~~~~~ 521 (551)
..+.|+.|...-.+-.|.|..| +|||=++|...
T Consensus 3 ~~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 3 HSYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CCcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 4578999999778889999999 99999999874
No 440
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=77.17 E-value=1.3 Score=30.37 Aligned_cols=30 Identities=47% Similarity=0.986 Sum_probs=26.2
Q ss_pred ecCCCCCCCCceeEecccC-CCCcccccccC
Q 008845 492 SCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 521 (551)
Q Consensus 492 ~~~~c~~~g~~~~~~~~~~-~~~~~~~~~~~ 521 (551)
.||+|+..-.+-.|.|.+| +|||=..|...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 5999998888899999999 79998888863
No 441
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=76.40 E-value=1.7 Score=28.91 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=26.0
Q ss_pred ecCCCCCCC-CceeEecccC-CCCcccccccCCC
Q 008845 492 SCDGCDEEG-RVWAFSCDEC-DFCLHPNCALGED 523 (551)
Q Consensus 492 ~~~~c~~~g-~~~~~~~~~~-~~~~~~~~~~~~~ 523 (551)
.||+|+... .|-.|.|..| +|||=-.|.....
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~ 35 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMG 35 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhhc
Confidence 599999755 6799999977 7999999986543
No 442
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=75.72 E-value=24 Score=29.19 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=36.9
Q ss_pred HHhhhHHHHHHHHH---HhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCC--cceEEEECC
Q 008845 354 CRAFLPKLIDAYKK---IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG--IPMLVAIGP 428 (551)
Q Consensus 354 C~~~~p~l~~l~~~---~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~--~P~~~lid~ 428 (551)
-......+.+++++ ++++ +.+|.++.+... ...+.||++. .|.+.+.+-
T Consensus 29 ~~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~~~-----------------------~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 29 LESLKEFKQAVARQLISEKGA---INFLTADGDKFR-----------------------HPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCce---EEEEEEechHhh-----------------------hHHHHcCCCHhHCCEEEEEcc
Confidence 45677788888888 7765 666666554332 3678899987 899999987
Q ss_pred CC
Q 008845 429 SG 430 (551)
Q Consensus 429 ~G 430 (551)
++
T Consensus 83 ~~ 84 (111)
T cd03072 83 RH 84 (111)
T ss_pred hh
Confidence 65
No 443
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=74.96 E-value=39 Score=33.77 Aligned_cols=90 Identities=12% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCEEEEEEecCCCh--hHHhhh---HHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHH
Q 008845 339 GKTILLYFSAHWCP--PCRAFL---PKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 413 (551)
Q Consensus 339 gk~vll~F~a~wC~--~C~~~~---p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 413 (551)
-+.++|+|+.+--. .-+++. ..+-+|..+...+ .++.+..|++..+. .+++
T Consensus 51 yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~-~gigfg~VD~~Kd~-----------------------klAK 106 (383)
T PF01216_consen 51 YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED-KGIGFGMVDSKKDA-----------------------KLAK 106 (383)
T ss_dssp -SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG-CTEEEEEEETTTTH-----------------------HHHH
T ss_pred hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc-cCcceEEeccHHHH-----------------------HHHH
Confidence 45788888877532 222211 2233344444332 47888888887765 6999
Q ss_pred hcCCCCcceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHhc
Q 008845 414 KFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 468 (551)
Q Consensus 414 ~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~~ 468 (551)
.+|+...++++++ ++|+++.-+| ....+.|...|..++.
T Consensus 107 KLgv~E~~SiyVf-kd~~~IEydG---------------~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 107 KLGVEEEGSIYVF-KDGEVIEYDG---------------ERSADTLVEFLLDLLE 145 (383)
T ss_dssp HHT--STTEEEEE-ETTEEEEE-S-----------------SHHHHHHHHHHHHS
T ss_pred hcCccccCcEEEE-ECCcEEEecC---------------ccCHHHHHHHHHHhcc
Confidence 9999999999999 7888887643 2233557777777776
No 444
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.66 E-value=6.9 Score=36.13 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=56.4
Q ss_pred eeecccC-CCc--EEEE--EecC----CCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCcccc
Q 008845 12 RVKLDSL-KGK--IGLY--FSAS----WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 82 (551)
Q Consensus 12 ~v~l~~~-~gk--vlv~--F~a~----wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 82 (551)
..+|+++ .|+ ++|| +++| -|+.|..++..+.-....+... ++.++.|+-. -.+.+..|-+.++|...-+
T Consensus 63 ~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~-dv~lv~VsRA-Pl~~l~~~k~rmGW~f~w~ 140 (247)
T COG4312 63 KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH-DVTLVAVSRA-PLEELVAYKRRMGWQFPWV 140 (247)
T ss_pred chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc-CceEEEEecC-cHHHHHHHHHhcCCcceeE
Confidence 5677776 677 6666 4455 6999999999998777777765 5777777654 4577888888999884444
Q ss_pred CChhhHHHHHhhcCC
Q 008845 83 SDSETRDKLDELFKV 97 (551)
Q Consensus 83 ~~~~~~~~l~~~~~v 97 (551)
+..+. .....|++
T Consensus 141 Ss~~s--~Fn~Df~v 153 (247)
T COG4312 141 SSTDS--DFNRDFQV 153 (247)
T ss_pred eccCc--cccccccc
Confidence 43332 24445544
No 445
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=73.61 E-value=1.3 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=16.8
Q ss_pred CceecCCCCCC---------CCceeEecccCCCC
Q 008845 489 GVYSCDGCDEE---------GRVWAFSCDECDFC 513 (551)
Q Consensus 489 ~~~~~~~c~~~---------g~~~~~~~~~~~~~ 513 (551)
-.|.|+.|.++ -.+--|.|++|+|.
T Consensus 26 v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CGF~ 59 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCGFE 59 (61)
T ss_pred eEeeCCCCCceeeehhhhHHHcCCceECCCcCcc
Confidence 34667776632 23457999999985
No 446
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=73.46 E-value=17 Score=29.36 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=46.6
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCC---
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--- 98 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--- 98 (551)
|+|.|..+-- .-...+..+.++++..+..| .+++|++...+. ..||+.+++.
T Consensus 22 VLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~g--T~~~vdCgd~e~----------------------kKLCKKlKv~~~~ 76 (112)
T cd03067 22 VLVLYSKSAK-SAEALLKLLSDVAQAVKGQG--TIAWIDCGDSES----------------------RKLCKKLKVDPSS 76 (112)
T ss_pred EEEEEecchh-hHHHHHHHHHHHHHHhcCce--eEEEEecCChHH----------------------HHHHHHHccCCCC
Confidence 7777765543 33456778999999998665 788999985444 6799999998
Q ss_pred -CCcEEEEEcCCCeEE
Q 008845 99 -GIPHLVILDENGKVL 113 (551)
Q Consensus 99 -~~P~~~lid~~G~i~ 113 (551)
.-|..+.--++|...
T Consensus 77 kp~~~~LkHYKdG~fH 92 (112)
T cd03067 77 KPKPVELKHYKDGDFH 92 (112)
T ss_pred CCCcchhhcccCCCcc
Confidence 556554444666443
No 447
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=73.40 E-value=9.2 Score=33.38 Aligned_cols=62 Identities=31% Similarity=0.403 Sum_probs=40.9
Q ss_pred eeecccC-CCc-EEEEEecC--CCHh-hHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhC
Q 008845 12 RVKLDSL-KGK-IGLYFSAS--WCGP-CQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 75 (551)
Q Consensus 12 ~v~l~~~-~gk-vlv~F~a~--wC~~-C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 75 (551)
+++++++ +|| ++| |-.| .-|. |+...|-|.+-+++++.+|-=.|+-++++ +.-..+.|.+..
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn-DpFv~~aW~k~~ 100 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN-DPFVMKAWAKSL 100 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC-cHHHHHHHHhhc
Confidence 6777766 688 555 4432 2233 67789999999999999873357777777 444444444433
No 448
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.99 E-value=6.1 Score=42.94 Aligned_cols=77 Identities=25% Similarity=0.267 Sum_probs=54.0
Q ss_pred CCcEEEEEEecCCCccchhhhHHHH---HHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhh
Q 008845 178 EGKTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 254 (551)
Q Consensus 178 ~gk~v~l~f~~~~~~~c~~~~~~~~---~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~ 254 (551)
++|+|+|-+...||-+|.-+..+.. ++++-++.. .|-|.+|.++ -|+.|..+..+++.
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREE--------------RPDvD~~Ym~~~q~ 102 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREE--------------RPDVDSLYMNASQA 102 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhh--------------ccCHHHHHHHHHHH
Confidence 5688999999999999988775432 466666554 5566667654 23334445566666
Q ss_pred cCcC-CcceEEEECCCCCcc
Q 008845 255 FELS-TLPTLVIIGPDGKTL 273 (551)
Q Consensus 255 f~v~-~~P~lvi~~~~gk~~ 273 (551)
..-+ ++|.-|++.|+|+..
T Consensus 103 ~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred hccCCCCceeEEECCCCcee
Confidence 6555 699999999998764
No 449
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=72.76 E-value=17 Score=31.89 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=19.2
Q ss_pred CCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHH
Q 008845 30 WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 66 (551)
Q Consensus 30 wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~ 66 (551)
+|++|+.....|+.+ .+.+.-++++.+.+
T Consensus 15 t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~ 43 (147)
T cd03031 15 TFEDCNNVRAILESF--------RVKFDERDVSMDSG 43 (147)
T ss_pred cChhHHHHHHHHHHC--------CCcEEEEECCCCHH
Confidence 999999877666543 25556667765543
No 450
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=72.03 E-value=3.4 Score=23.82 Aligned_cols=12 Identities=33% Similarity=1.027 Sum_probs=8.7
Q ss_pred CceeEecccCCC
Q 008845 501 RVWAFSCDECDF 512 (551)
Q Consensus 501 ~~~~~~~~~~~~ 512 (551)
.+=.|.||+|++
T Consensus 13 ~~v~f~CPnCG~ 24 (24)
T PF07754_consen 13 QAVPFPCPNCGF 24 (24)
T ss_pred cCceEeCCCCCC
Confidence 355788888875
No 451
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=71.27 E-value=13 Score=27.60 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=34.6
Q ss_pred EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcceEE
Q 008845 345 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLV 424 (551)
Q Consensus 345 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P~~~ 424 (551)
.|+++||+.|++..-.|.+. + -.++++.++..... .++.+......+|++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----g--l~~e~~~v~~~~~~----------------------~~~~~~np~~~vP~L~ 53 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----G--ITVELREVELKNKP----------------------AEMLAASPKGTVPVLV 53 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----C--CCcEEEEeCCCCCC----------------------HHHHHHCCCCCCCEEE
Confidence 46789999999876654332 1 13666666553221 1344444566788874
Q ss_pred EECCCCcEEE
Q 008845 425 AIGPSGRTIT 434 (551)
Q Consensus 425 lid~~G~i~~ 434 (551)
. .+|..+.
T Consensus 54 ~--~~g~~l~ 61 (71)
T cd03060 54 L--GNGTVIE 61 (71)
T ss_pred E--CCCcEEe
Confidence 3 4566654
No 452
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=69.54 E-value=1.7 Score=27.12 Aligned_cols=25 Identities=28% Similarity=0.708 Sum_probs=14.9
Q ss_pred eecCCCCCCCCcee---EecccCCCCcc
Q 008845 491 YSCDGCDEEGRVWA---FSCDECDFCLH 515 (551)
Q Consensus 491 ~~~~~c~~~g~~~~---~~~~~~~~~~~ 515 (551)
|+|..|...-..-. =+|++|++++-
T Consensus 1 Y~C~~Cg~~~~~~~~~~irC~~CG~RIl 28 (32)
T PF03604_consen 1 YICGECGAEVELKPGDPIRCPECGHRIL 28 (32)
T ss_dssp EBESSSSSSE-BSTSSTSSBSSSS-SEE
T ss_pred CCCCcCCCeeEcCCCCcEECCcCCCeEE
Confidence 56777766554332 37888888764
No 453
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=69.44 E-value=2.2 Score=29.10 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=27.7
Q ss_pred CCceecCCCCCCCCc--eeEecccCCCCcccccccCC
Q 008845 488 CGVYSCDGCDEEGRV--WAFSCDECDFCLHPNCALGE 522 (551)
Q Consensus 488 ~~~~~~~~c~~~g~~--~~~~~~~~~~~~~~~~~~~~ 522 (551)
.++-.|.-|++.-.+ =+|.|..|.+-+|++|+...
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence 456679999886543 28999999999999998654
No 454
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=69.23 E-value=22 Score=30.95 Aligned_cols=93 Identities=23% Similarity=0.304 Sum_probs=55.6
Q ss_pred CCCcEEEEEecC--CCHhhHh-hhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCC-cccc-CChhhHHHHH
Q 008845 18 LKGKIGLYFSAS--WCGPCQR-FTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL-AVPF-SDSETRDKLD 92 (551)
Q Consensus 18 ~~gkvlv~F~a~--wC~~C~~-~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~ 92 (551)
++||.+|.|..| .-|.|.. .+|.+.+++++++.+|-=.|+-|+++ +.-....|.+..+.. .+.+ +|.. .+..
T Consensus 35 f~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~--geFT 111 (165)
T COG0678 35 FKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGN--GEFT 111 (165)
T ss_pred cCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCC--chhh
Confidence 478844446543 3455654 69999999999998873356667776 555566666666544 3322 2222 2344
Q ss_pred hhc-----------CCCCCcEEEEEcCCCeEEE
Q 008845 93 ELF-----------KVMGIPHLVILDENGKVLS 114 (551)
Q Consensus 93 ~~~-----------~v~~~P~~~lid~~G~i~~ 114 (551)
+.. |+++--...++ +||.+..
T Consensus 112 k~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~ 143 (165)
T COG0678 112 KAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEK 143 (165)
T ss_pred hhcCceeecccCCcceeeeeEEEEE-eCCeEEE
Confidence 433 34455556777 6787654
No 455
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=68.80 E-value=14 Score=34.05 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=51.0
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCc
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 101 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 101 (551)
++|..|-+.-+-|-.+...+.=++.+++ .+++..|..... ...++|..+++|
T Consensus 162 i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~-------------------------gas~~F~~n~lP 213 (273)
T KOG3171|consen 162 IVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNT-------------------------GASDRFSLNVLP 213 (273)
T ss_pred EEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccc-------------------------cchhhhcccCCc
Confidence 7888999999999999999999999887 355555543322 245779999999
Q ss_pred EEEEEcCCCeEEE
Q 008845 102 HLVILDENGKVLS 114 (551)
Q Consensus 102 ~~~lid~~G~i~~ 114 (551)
++.++ ++|+++.
T Consensus 214 ~LliY-kgGeLIg 225 (273)
T KOG3171|consen 214 TLLIY-KGGELIG 225 (273)
T ss_pred eEEEe-eCCchhH
Confidence 99999 8898875
No 456
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=67.82 E-value=19 Score=31.58 Aligned_cols=103 Identities=17% Similarity=0.349 Sum_probs=64.2
Q ss_pred eeecccC-CCCEEEEEEe--cCCChh-HHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCC-cccccCc
Q 008845 331 KVPVSDL-AGKTILLYFS--AHWCPP-CRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW-LALPFGD 405 (551)
Q Consensus 331 ~v~l~~~-~gk~vll~F~--a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~-~~~~~~~ 405 (551)
++.++++ +||-++| |. +...|. |+...|-+.+-+++++.+. --+|+.|+++ ++-....|.+.++- -.+-+..
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKG-Vd~iicvSVn-DpFv~~aW~k~~g~~~~V~f~a 110 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKG-VDEIICVSVN-DPFVMKAWAKSLGANDHVKFVA 110 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcC-CcEEEEEecC-cHHHHHHHHhhcCccceEEEEe
Confidence 6666665 5754443 44 445677 6778898888888888762 2377888886 55666677666642 2344555
Q ss_pred hhhHHHHHhcCC-----------CCcceEEEECCCCcEEEccc
Q 008845 406 ARKASLSRKFKV-----------SGIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 406 d~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~~~ 437 (551)
|..+++.+.+++ ++-..-.++ .+|++...+.
T Consensus 111 D~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~nv 152 (171)
T KOG0541|consen 111 DPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVNV 152 (171)
T ss_pred cCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEEe
Confidence 555555554443 333445566 6899887754
No 457
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=67.05 E-value=37 Score=31.39 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=61.2
Q ss_pred cee-cCCCCeeec---ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCC
Q 008845 323 FVV-GKNGGKVPV---SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 398 (551)
Q Consensus 323 f~~-~~~g~~v~l---~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 398 (551)
|+. -.+|+.+.- .+++.-.++|..|-+.-+-|..+...+.=|+..|+. +.++.|.....
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckikss~~------------- 201 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKSSNT------------- 201 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeeeccc-------------
Confidence 454 455655431 222344788899999989999999988888888763 67776655332
Q ss_pred cccccCchhhHHHHHhcCCCCcceEEEECCCCcEEEcc
Q 008845 399 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 399 ~~~~~~~d~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 436 (551)
...++|...++|++.|+ ++|.++...
T Consensus 202 -----------gas~~F~~n~lP~LliY-kgGeLIgNF 227 (273)
T KOG3171|consen 202 -----------GASDRFSLNVLPTLLIY-KGGELIGNF 227 (273)
T ss_pred -----------cchhhhcccCCceEEEe-eCCchhHHH
Confidence 25678999999999999 899988754
No 458
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=66.64 E-value=15 Score=27.30 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=34.0
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHHHhhcCCCCCcEEE
Q 008845 25 YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 104 (551)
Q Consensus 25 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 104 (551)
.|+.+||++|++..-.+.+.- - .++++.++..... ..+.+......+|++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~g-----l-~~e~~~v~~~~~~-----------------------~~~~~~np~~~vP~L~ 53 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAG-----I-TVELREVELKNKP-----------------------AEMLAASPKGTVPVLV 53 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcC-----C-CcEEEEeCCCCCC-----------------------HHHHHHCCCCCCCEEE
Confidence 467899999988665444331 1 3566655543221 1344555666789774
Q ss_pred EEcCCCeEEE
Q 008845 105 ILDENGKVLS 114 (551)
Q Consensus 105 lid~~G~i~~ 114 (551)
. .+|..+.
T Consensus 54 ~--~~g~~l~ 61 (71)
T cd03060 54 L--GNGTVIE 61 (71)
T ss_pred E--CCCcEEe
Confidence 3 4566654
No 459
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=66.54 E-value=9.1 Score=31.44 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=21.7
Q ss_pred HHHHhhcCCCCCcEEEEEcCCCeEEEc
Q 008845 89 DKLDELFKVMGIPHLVILDENGKVLSD 115 (551)
Q Consensus 89 ~~l~~~~~v~~~P~~~lid~~G~i~~~ 115 (551)
..|..+|++...|+++++ ++|+.+..
T Consensus 72 ~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 579999999999999999 78887753
No 460
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=65.58 E-value=2.3 Score=28.98 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=23.9
Q ss_pred CceecCCCCC-CCCceeEecccCC-CCccccccc
Q 008845 489 GVYSCDGCDE-EGRVWAFSCDECD-FCLHPNCAL 520 (551)
Q Consensus 489 ~~~~~~~c~~-~g~~~~~~~~~~~-~~~~~~~~~ 520 (551)
..+.|++|.. .-.|-.|.|..|. |||=.+|..
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~ 36 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFS 36 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHH
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHh
Confidence 4689999998 5467889999997 999888875
No 461
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=65.46 E-value=15 Score=30.10 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=26.7
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCC---CHHHHHHHHhhC
Q 008845 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DDEAFKGYFSKM 75 (551)
Q Consensus 24 v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~~ 75 (551)
..|+.|+|+.|++....|.+. | +.+-.+++.. +.+++..+++..
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-------~-i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-------G-VAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------C-CCeEEEecccCCCCHHHHHHHHHHh
Confidence 457789999999876555532 2 4444555433 456555555543
No 462
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=64.60 E-value=15 Score=29.92 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=15.4
Q ss_pred EEEecCCCHhhHhhhHHHHH
Q 008845 24 LYFSASWCGPCQRFTPILAE 43 (551)
Q Consensus 24 v~F~a~wC~~C~~~~p~l~~ 43 (551)
..|+.++|+.|+.....|.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45778999999987655554
No 463
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=64.15 E-value=47 Score=32.05 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=54.8
Q ss_pred ceeec-ccCCCc--EEEEEecCCCHhhHhhhHHHH-HHHHHhcCCC--CEEEEEEeCCCCHH--HHHHHHh-hC----C-
Q 008845 11 LRVKL-DSLKGK--IGLYFSASWCGPCQRFTPILA-EVYNELSRQG--DFEVIFVSGDEDDE--AFKGYFS-KM----P- 76 (551)
Q Consensus 11 ~~v~l-~~~~gk--vlv~F~a~wC~~C~~~~p~l~-~~~~~~~~~~--~~~vv~v~~d~~~~--~~~~~~~-~~----~- 76 (551)
+.+++ ..++|| +|..|+.-|-..|.. .|. ....++.... .++++-|++-++.- -+..++. .+ +
T Consensus 112 ~~~~~~~~l~gkvSlV~l~s~~~ge~~~~---sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~~~~lrk~ip~ 188 (252)
T PF05176_consen 112 NKVDTTDLLRGKVSLVCLFSSAWGEEMVD---SWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLFMGSLRKSIPE 188 (252)
T ss_pred CCcccccccCCceEEEEEeehHHHHHHHH---HHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhhhhhccCCH
Confidence 34444 455899 555566666444332 222 2333343333 68999999875532 1122221 11 1
Q ss_pred --CCcc-ccCChhhHHHHHhhcCCC--CCcEEEEEcCCCeEEEc
Q 008845 77 --WLAV-PFSDSETRDKLDELFKVM--GIPHLVILDENGKVLSD 115 (551)
Q Consensus 77 --~~~~-~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~i~~~ 115 (551)
+..+ ......-...+.+.+++. .+..++|+|.+|+|+..
T Consensus 189 ~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWa 232 (252)
T PF05176_consen 189 ERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWA 232 (252)
T ss_pred HHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeC
Confidence 1111 112111124577888876 45889999999999985
No 464
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=63.84 E-value=3.3 Score=27.49 Aligned_cols=30 Identities=27% Similarity=0.696 Sum_probs=25.2
Q ss_pred eecCCCCCCCCceeEecccC-CCCcccccccC
Q 008845 491 YSCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 521 (551)
Q Consensus 491 ~~~~~c~~~g~~~~~~~~~~-~~~~~~~~~~~ 521 (551)
|.|+.|...+ +-.|.|..| +|||=..|...
T Consensus 1 y~C~~C~~~~-~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 1 YTCNECKHHV-ETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred CcCCCCCCcC-CCceECCCCcchhhHHHHhCC
Confidence 5799998855 589999999 99998888754
No 465
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=63.60 E-value=49 Score=28.76 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=68.5
Q ss_pred CeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHH-HHHh-hcCCCeEEEEEeCCCC--------hHHHHHHHhcCCCc
Q 008845 330 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAY-KKIK-ERNESLEVVFISSDRD--------QTSFDEFFKGMPWL 399 (551)
Q Consensus 330 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~-~~~~-~~~~~~~vv~vs~d~~--------~~~~~~~~~~~~~~ 399 (551)
+...-+++.||+-+|.--|-....=.+-.+.++.+. .+|. +++.--. .|+.|+. ......--+++||-
T Consensus 50 ~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTT--IiN~DDAi~GtgmFVkssae~~Kke~pwS 127 (184)
T COG3054 50 KTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTT--IINTDDAIPGTGMFVKSSAESNKKEYPWS 127 (184)
T ss_pred cccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeE--EeccCCccccccceeecchhhccccCCce
Confidence 344567788998888777654433333333333331 1222 2221122 2344431 12223334456776
Q ss_pred ccccCchhhHHHHHhcCCCCc-ceEEEECCCCcEEEcccchhhhhcCCCCCCCCHHHHHHHHHHHHHHh
Q 008845 400 ALPFGDARKASLSRKFKVSGI-PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 467 (551)
Q Consensus 400 ~~~~~~d~~~~l~~~~~v~~~-P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~~~ 467 (551)
.+-+ |..+.....++++.- -.++++|++|++....-+. .+.+++.+....+.+++
T Consensus 128 q~vl--D~~gvak~AWqL~e~~SaivVlDk~G~VkfvkeGa-----------Lt~aevQ~Vi~ll~~l~ 183 (184)
T COG3054 128 QFVL--DSNGVAKNAWQLKEESSAVVVLDKDGRVKFVKEGA-----------LTQAEVQQVIDLLQKLL 183 (184)
T ss_pred eeEE--ccchhhhhhhccccccceEEEEcCCCcEEEEecCC-----------ccHHHHHHHHHHHHHhc
Confidence 5544 444433337888754 4577889999998775432 67888888888777664
No 466
>PHA03075 glutaredoxin-like protein; Provisional
Probab=63.14 E-value=12 Score=30.94 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=23.3
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhc
Q 008845 22 IGLYFSASWCGPCQRFTPILAEVYNELS 49 (551)
Q Consensus 22 vlv~F~a~wC~~C~~~~p~l~~~~~~~~ 49 (551)
++|.|.-|.|+.|......+.++.++|.
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 8899999999999988888866666553
No 467
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=63.07 E-value=4.8 Score=33.36 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=21.6
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 008845 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 64 (551)
Q Consensus 24 v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~ 64 (551)
..|..++|+.|++....|.+ . ++.+..+++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~-~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------H-GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------c-CCceEEecccCC
Confidence 34678999999987765554 2 255556665543
No 468
>PHA03075 glutaredoxin-like protein; Provisional
Probab=62.61 E-value=11 Score=31.11 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=24.1
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHH
Q 008845 340 KTILLYFSAHWCPPCRAFLPKLIDAYKKI 368 (551)
Q Consensus 340 k~vll~F~a~wC~~C~~~~p~l~~l~~~~ 368 (551)
|.+++.|.-|-|+.|......|.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 67899999999999999888776665555
No 469
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=61.17 E-value=12 Score=38.33 Aligned_cols=23 Identities=26% Similarity=0.752 Sum_probs=20.9
Q ss_pred CceecCCCCCCCCceeEecccCC
Q 008845 489 GVYSCDGCDEEGRVWAFSCDECD 511 (551)
Q Consensus 489 ~~~~~~~c~~~g~~~~~~~~~~~ 511 (551)
..+.|+.|+..-.-|.+.||.|+
T Consensus 353 p~~~c~~cg~~~~~~~~~c~~c~ 375 (389)
T PRK11788 353 PRYRCRNCGFTARTLYWHCPSCK 375 (389)
T ss_pred CCEECCCCCCCCccceeECcCCC
Confidence 34899999999999999999996
No 470
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=61.01 E-value=1e+02 Score=26.02 Aligned_cols=92 Identities=11% Similarity=0.226 Sum_probs=50.7
Q ss_pred cEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCcC-
Q 008845 180 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS- 258 (551)
Q Consensus 180 k~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v~- 258 (551)
+.+++-|-... +..+-...+.+++.+......++-+.-|.+.+ .++..+..|++.|++.
T Consensus 22 ~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikD------------------YGek~N~~Laery~i~k 81 (126)
T PF07912_consen 22 KYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKD------------------YGEKENMELAERYKIDK 81 (126)
T ss_dssp SEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBS------------------SSS-CCHHHHHHTT-SC
T ss_pred ceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCccc------------------ccchhHHHHHHHhCCCc
Confidence 55666665442 33667778888885555455555444454432 1233468999999995
Q ss_pred -CcceEEEECCCC-CcccccchhhhhhcCCCCCCCChhhHHHHHH
Q 008845 259 -TLPTLVIIGPDG-KTLHSNVAEAIEEHGVGAFPFTPEKFAELAE 301 (551)
Q Consensus 259 -~~P~lvi~~~~g-k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 301 (551)
.+|.+.++..+. ..+.- ...-+++.+.+..+..
T Consensus 82 e~fPv~~LF~~~~~~pv~~----------p~~~~~t~~~l~~fvk 116 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRY----------PFDGDVTADNLQRFVK 116 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-----------TCS-S-HHHHHHHHH
T ss_pred ccCCEEEEecCCCCCCccC----------CccCCccHHHHHHHHH
Confidence 689999986332 22111 0122678888888765
No 471
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=59.74 E-value=6.8 Score=27.13 Aligned_cols=30 Identities=23% Similarity=0.669 Sum_probs=25.6
Q ss_pred ecCCCCCC-CCceeEecccC-CCCcccccccC
Q 008845 492 SCDGCDEE-GRVWAFSCDEC-DFCLHPNCALG 521 (551)
Q Consensus 492 ~~~~c~~~-g~~~~~~~~~~-~~~~~~~~~~~ 521 (551)
.||.|... -.|..|.|.+| +|||=..|...
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 59999975 57899999999 79999999864
No 472
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.47 E-value=25 Score=33.07 Aligned_cols=30 Identities=13% Similarity=-0.180 Sum_probs=23.3
Q ss_pred EEEEEEecCCCccchhhhHHHHHHHHHHhc
Q 008845 181 TIGLYFSMSSYKASAEFTPRLVEVYEKLKG 210 (551)
Q Consensus 181 ~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~ 210 (551)
.....|+..-||+|-...+.+.++...+..
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 344558899999999999998887776553
No 473
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=59.12 E-value=37 Score=25.68 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=47.9
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008845 341 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 420 (551)
Q Consensus 341 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 420 (551)
++|..|-+...+-.++....+.++.+.+.+. .+++=.|++-..+ ++++.++|-++
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~--~~~LeVIDv~~~P-----------------------~lAe~~~ivAt 56 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGG--PYELEVIDVLKQP-----------------------QLAEEDKIVAT 56 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCC--cEEEEEEEcccCH-----------------------hHHhhCCEEEe
Confidence 4566677777788999888898888887532 4666667776665 58999999999
Q ss_pred ceEEEECCC
Q 008845 421 PMLVAIGPS 429 (551)
Q Consensus 421 P~~~lid~~ 429 (551)
||++=..|.
T Consensus 57 PtLvk~~P~ 65 (72)
T cd02978 57 PTLVKVLPP 65 (72)
T ss_pred chhhhcCCC
Confidence 998766543
No 474
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=58.61 E-value=99 Score=26.64 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=41.1
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC--
Q 008845 341 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS-- 418 (551)
Q Consensus 341 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~-- 418 (551)
.-++.|+.|.|+=|...+..|+ .+ +|+|-.+..|+-. .+.++|||.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-------~~--Gf~Vk~~~~~d~~-----------------------alK~~~gIp~e 73 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-------AN--GFEVKVVETDDFL-----------------------ALKRRLGIPYE 73 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-------hC--CcEEEEeecCcHH-----------------------HHHHhcCCChh
Confidence 3466788999999998766543 22 5777776665432 466677774
Q ss_pred -CcceEEEECCCCcEEEccc
Q 008845 419 -GIPMLVAIGPSGRTITKEA 437 (551)
Q Consensus 419 -~~P~~~lid~~G~i~~~~~ 437 (551)
.-=.+.+| +|+.+.-|.
T Consensus 74 ~~SCHT~VI--~Gy~vEGHV 91 (149)
T COG3019 74 MQSCHTAVI--NGYYVEGHV 91 (149)
T ss_pred hccccEEEE--cCEEEeccC
Confidence 22356777 588877543
No 475
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=58.18 E-value=22 Score=29.44 Aligned_cols=53 Identities=9% Similarity=0.199 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008845 362 IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 418 (551)
Q Consensus 362 ~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 418 (551)
.+...++++. ++.+|.|..... +..++|.+... ..+|+..|++..+-+.+|..
T Consensus 3 ~~~~~~l~~~--gv~lv~I~~g~~-~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 3 SRRKPELEAA--GVKLVVIGCGSP-EGIEKFCELTG-FPFPLYVDPERKLYKALGLK 55 (115)
T ss_pred hHhHHHHHHc--CCeEEEEEcCCH-HHHHHHHhccC-CCCcEEEeCcHHHHHHhCCc
Confidence 3344555544 689999998654 45888887655 47778888888888888876
No 476
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=57.48 E-value=8 Score=26.24 Aligned_cols=30 Identities=37% Similarity=0.743 Sum_probs=24.9
Q ss_pred ecCCCCCC-CCceeEecccCC-CCcccccccC
Q 008845 492 SCDGCDEE-GRVWAFSCDECD-FCLHPNCALG 521 (551)
Q Consensus 492 ~~~~c~~~-g~~~~~~~~~~~-~~~~~~~~~~ 521 (551)
.||+|... -.|-.|.|.+|. |||=..|...
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 59999864 566999999996 9998888854
No 477
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.89 E-value=20 Score=34.17 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=31.8
Q ss_pred ccCceeecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhc
Q 008845 8 ELLLRVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELS 49 (551)
Q Consensus 8 ~~~~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~ 49 (551)
.++..+...+..++ .++.|.-..||+|+...|.+.+.+....
T Consensus 72 ~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 72 PDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 34445556666668 8899999999999999999988655554
No 478
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.72 E-value=17 Score=32.81 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=42.9
Q ss_pred ecCCCCeeecccCC--CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008845 325 VGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 382 (551)
Q Consensus 325 ~~~~g~~v~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~ 382 (551)
++..|+.|.+.+|. ++.|+....-+.|-.|++....|..+..-+... ++.+++|-.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~--Gv~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDEL--GVVLIAVGP 92 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHh--CCEEEEEec
Confidence 67889999998884 356666667899999999999999985555544 567777653
No 479
>PHA00626 hypothetical protein
Probab=55.84 E-value=9 Score=26.99 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=15.0
Q ss_pred CceeEecccCCCCcccccc
Q 008845 501 RVWAFSCDECDFCLHPNCA 519 (551)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~ 519 (551)
..-.|-|+.|+|.....-.
T Consensus 20 ~snrYkCkdCGY~ft~~~~ 38 (59)
T PHA00626 20 WSDDYVCCDCGYNDSKDAF 38 (59)
T ss_pred cCcceEcCCCCCeechhhh
Confidence 3457999999999887644
No 480
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.59 E-value=22 Score=33.96 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=34.4
Q ss_pred cCCCCeeecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHh
Q 008845 326 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIK 369 (551)
Q Consensus 326 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 369 (551)
..++..+.+.+..++++++.|....||+|++..|.+.+.+....
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 55666666666667899999999999999999998887555544
No 481
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=54.77 E-value=7.7 Score=26.17 Aligned_cols=26 Identities=27% Similarity=0.825 Sum_probs=19.3
Q ss_pred ceecCCCCCCCCc---eeEecccCCCCcc
Q 008845 490 VYSCDGCDEEGRV---WAFSCDECDFCLH 515 (551)
Q Consensus 490 ~~~~~~c~~~g~~---~~~~~~~~~~~~~ 515 (551)
.|.|..|...-.. -.-+|++|++++-
T Consensus 2 ~Y~C~~Cg~~~~~~~~~~irC~~CG~rIl 30 (44)
T smart00659 2 IYICGECGRENEIKSKDVVRCRECGYRIL 30 (44)
T ss_pred EEECCCCCCEeecCCCCceECCCCCceEE
Confidence 4888888875543 3678999998874
No 482
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=54.64 E-value=98 Score=31.79 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.3
Q ss_pred HHHHHhcCCCCcceEEEECCCCcEEEcc
Q 008845 409 ASLSRKFKVSGIPMLVAIGPSGRTITKE 436 (551)
Q Consensus 409 ~~l~~~~~v~~~P~~~lid~~G~i~~~~ 436 (551)
..++..|-+..+|..++|+..|+.+.+.
T Consensus 67 ~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 67 TQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred hhhhhhcccccccceeeecCCCceeEEe
Confidence 3577888899999999999999988873
No 483
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=53.07 E-value=73 Score=25.80 Aligned_cols=68 Identities=25% Similarity=0.351 Sum_probs=42.3
Q ss_pred cEEEEEEecCCCccchhhhHHHHHHHHHHhcCCCceEEEEeecccCHHHHHHHhcCCCCccccCCchhHHHHHhhcCcC-
Q 008845 180 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS- 258 (551)
Q Consensus 180 k~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iv~v~~d~~~~~~~~~~~~~~~~av~~~d~~~~~l~~~f~v~- 258 (551)
+.|++.|+.+.-.. ......+.+++..+++.|- +.++.+...+ .+.|+..+.+.
T Consensus 20 ~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT---~~~vdCgd~e---------------------~kKLCKKlKv~~ 74 (112)
T cd03067 20 NNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGT---IAWIDCGDSE---------------------SRKLCKKLKVDP 74 (112)
T ss_pred CcEEEEEecchhhH-HHHHHHHHHHHHHhcCcee---EEEEecCChH---------------------HHHHHHHHccCC
Confidence 34555555443222 3344577788999888764 6777776654 67899999887
Q ss_pred ---CcceEEEECCCCCc
Q 008845 259 ---TLPTLVIIGPDGKT 272 (551)
Q Consensus 259 ---~~P~lvi~~~~gk~ 272 (551)
.-|..+..-.+|.+
T Consensus 75 ~~kp~~~~LkHYKdG~f 91 (112)
T cd03067 75 SSKPKPVELKHYKDGDF 91 (112)
T ss_pred CCCCCcchhhcccCCCc
Confidence 44544433345544
No 485
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=51.44 E-value=12 Score=25.92 Aligned_cols=30 Identities=33% Similarity=0.731 Sum_probs=24.7
Q ss_pred ecCCCC-CCCCceeEecccC-CCCcccccccC
Q 008845 492 SCDGCD-EEGRVWAFSCDEC-DFCLHPNCALG 521 (551)
Q Consensus 492 ~~~~c~-~~g~~~~~~~~~~-~~~~~~~~~~~ 521 (551)
.|++|. ..-.|-.|.|.+| +|||=..|...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 589999 4456788999999 89999999863
No 486
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=51.03 E-value=33 Score=28.57 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=23.2
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCH
Q 008845 25 YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 65 (551)
Q Consensus 25 ~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~ 65 (551)
.|+.++|+.|++....|.+ . ++.+..+++..+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~-~i~~~~idi~~~~ 35 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------N-GIEYQFIDIGEDG 35 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------c-CCceEEEecCCCh
Confidence 4778999999987766654 2 3566677776544
No 487
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=50.77 E-value=24 Score=28.86 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=15.7
Q ss_pred EEEecCCChhHHhhhHHHHH
Q 008845 344 LYFSAHWCPPCRAFLPKLID 363 (551)
Q Consensus 344 l~F~a~wC~~C~~~~p~l~~ 363 (551)
..|+.++|+.|++....|.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46789999999997776543
No 488
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=50.14 E-value=41 Score=30.78 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
.|-+|+|..|...-|-|.-+...|+.++-+|++ +.+|-|-... ....|-=
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~--------------------------cIpNYPe 159 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATT--------------------------CIPNYPE 159 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEeccccc--------------------------ccCCCcc
Confidence 377999999999999999999999999999874 4555543321 1234445
Q ss_pred CCcceEEEECCCCcEEEcccc
Q 008845 418 SGIPMLVAIGPSGRTITKEAR 438 (551)
Q Consensus 418 ~~~P~~~lid~~G~i~~~~~~ 438 (551)
.-.||++++ -.|.+.....+
T Consensus 160 ~nlPTl~VY-~~G~lk~q~ig 179 (240)
T KOG3170|consen 160 SNLPTLLVY-HHGALKKQMIG 179 (240)
T ss_pred cCCCeEEEe-ecchHHhheeh
Confidence 668999999 67877766443
No 489
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=49.86 E-value=7.2 Score=25.98 Aligned_cols=19 Identities=26% Similarity=1.078 Sum_probs=15.8
Q ss_pred ceecCCCCCCCCceeEeccc
Q 008845 490 VYSCDGCDEEGRVWAFSCDE 509 (551)
Q Consensus 490 ~~~~~~c~~~g~~~~~~~~~ 509 (551)
.-.|-.|...|| |.|.|+.
T Consensus 4 ~~~CqkC~~~GH-~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGH-WTYECPN 22 (42)
T ss_pred CCcCcccCCCCc-chhhCCC
Confidence 457899999887 7999996
No 490
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=49.81 E-value=30 Score=31.67 Aligned_cols=95 Identities=14% Similarity=0.242 Sum_probs=59.1
Q ss_pred eecccCCCc-EEEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHhhCCCCccccCChhhHHHH
Q 008845 13 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 91 (551)
Q Consensus 13 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (551)
|+.++ +|- |+|..|...-|-|+-+...|+.++.+|+. +++|.|-...-
T Consensus 105 VT~As-~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~c--------------------------- 153 (240)
T KOG3170|consen 105 VTKAS-EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATTC--------------------------- 153 (240)
T ss_pred HHhcc-CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEecccccc---------------------------
Confidence 44444 466 99999999999999999999999999984 45554432211
Q ss_pred HhhcCCCCCcEEEEEcCCCeEEEcCcchhhhhcCCCCCCchHHHHHHHHHHH
Q 008845 92 DELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQE 143 (551)
Q Consensus 92 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 143 (551)
..-|--...||++++ -.|.+... -+... .+|. ...+.+.++.++-+.
T Consensus 154 IpNYPe~nlPTl~VY-~~G~lk~q-~igll-~lgG--~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 154 IPNYPESNLPTLLVY-HHGALKKQ-MIGLL-ELGG--MNLTMEDVEDFLVQA 200 (240)
T ss_pred cCCCcccCCCeEEEe-ecchHHhh-eehhh-hhcC--CcCCHHHHHHHHHhc
Confidence 012444678999999 56655432 11111 1221 224566676666443
No 491
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=49.26 E-value=29 Score=31.44 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=26.1
Q ss_pred EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008845 345 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 382 (551)
Q Consensus 345 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~ 382 (551)
+|..|.|++|-...|.|.++..++..+ +.+-+|..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEc
Confidence 588999999999999999999999875 65555543
No 492
>PRK09301 circadian clock protein KaiB; Provisional
Probab=49.10 E-value=60 Score=26.42 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=51.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChHHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008845 338 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 417 (551)
Q Consensus 338 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 417 (551)
++.++|=.|.+..-+-.++....+.++.+.+... .+++=.|++-..+ ++++.++|
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g--~y~LeVIDv~~qP-----------------------elAE~~~I 58 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKG--VYALKVIDVLKNP-----------------------QLAEEDKI 58 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEcccCH-----------------------hHHhHCCe
Confidence 3567777888888889999999999988776543 2666666666665 68999999
Q ss_pred CCcceEEEECCC
Q 008845 418 SGIPMLVAIGPS 429 (551)
Q Consensus 418 ~~~P~~~lid~~ 429 (551)
-++||++=.-|.
T Consensus 59 vATPTLIK~~P~ 70 (103)
T PRK09301 59 LATPTLAKILPP 70 (103)
T ss_pred EEecHHhhcCCC
Confidence 999998877554
No 493
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=48.71 E-value=22 Score=36.93 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=39.7
Q ss_pred CCceecCCCCCCCC---ceeEecccCCCCcccccccCCCCCCCCCccccCCCCCCceeecC
Q 008845 488 CGVYSCDGCDEEGR---VWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDG 545 (551)
Q Consensus 488 ~~~~~~~~c~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (551)
++..+|+-|-.+-+ +---+|..|++-+|--|-=+.++...- .....-+++-|.||.
T Consensus 117 kk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~--s~~s~~stepWfCea 175 (707)
T KOG0957|consen 117 KKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIP--SGSSDCSTEPWFCEA 175 (707)
T ss_pred ccceEEEEeecCccccccceeeccccCceecccccccccccccC--CCCccCCCCchhhhh
Confidence 45569999987764 356899999999999997665553221 222334668999985
No 494
>PRK11823 DNA repair protein RadA; Provisional
Probab=48.24 E-value=12 Score=39.62 Aligned_cols=24 Identities=33% Similarity=0.850 Sum_probs=22.0
Q ss_pred CCceecCCCCCCCCceeEecccCC
Q 008845 488 CGVYSCDGCDEEGRVWAFSCDECD 511 (551)
Q Consensus 488 ~~~~~~~~c~~~g~~~~~~~~~~~ 511 (551)
+..|.|..|.-+..-|.-+|+.|+
T Consensus 5 ~~~y~C~~Cg~~~~~~~g~Cp~C~ 28 (446)
T PRK11823 5 KTAYVCQECGAESPKWLGRCPECG 28 (446)
T ss_pred CCeEECCcCCCCCcccCeeCcCCC
Confidence 456999999999999999999995
No 495
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=47.09 E-value=46 Score=27.69 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=22.8
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC
Q 008845 344 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 385 (551)
Q Consensus 344 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~vv~vs~d~~ 385 (551)
..|+.++|+.|++....|.+ . ++.+..+++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~--~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------N--GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------c--CCceEEEecCCC
Confidence 35788999999998776654 1 355666666544
No 496
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=47.08 E-value=42 Score=28.72 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=26.5
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCC---HHHHHHHHhhC
Q 008845 23 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKM 75 (551)
Q Consensus 23 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~---~~~~~~~~~~~ 75 (551)
+..|..++|+.|+.....|.+ .| +.+..+++..+ .+.+..+++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~g-i~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HD-IPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cC-CCcEEeeccCChhhHHHHHHHHHHh
Confidence 345668999999986654443 22 55555665443 34455554443
No 497
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=46.39 E-value=11 Score=21.33 Aligned_cols=10 Identities=20% Similarity=1.075 Sum_probs=6.6
Q ss_pred EecccCCCCc
Q 008845 505 FSCDECDFCL 514 (551)
Q Consensus 505 ~~~~~~~~~~ 514 (551)
|.|+.|+|.-
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 7899999865
No 498
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=46.06 E-value=62 Score=26.81 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=25.6
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhcCCCCEEEEEEeCCCC---HHHHHHHHh
Q 008845 24 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFS 73 (551)
Q Consensus 24 v~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~vv~v~~d~~---~~~~~~~~~ 73 (551)
..|+.++|+.|++....|.+ .| +.+..+++..+ .+++.++++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~g-i~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQ-IPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC-CceEEEecCCCcchHHHHHHHHH
Confidence 34668999999987655554 22 55666666543 444444444
No 499
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=46.04 E-value=16 Score=30.16 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=15.5
Q ss_pred EEEecCCChhHHhhhHHHHH
Q 008845 344 LYFSAHWCPPCRAFLPKLID 363 (551)
Q Consensus 344 l~F~a~wC~~C~~~~p~l~~ 363 (551)
..|..++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35778999999998776544
No 500
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=46.04 E-value=10 Score=37.15 Aligned_cols=33 Identities=27% Similarity=0.668 Sum_probs=28.5
Q ss_pred ceecCCCCC-CCCceeEecccC-CCCcccccccCC
Q 008845 490 VYSCDGCDE-EGRVWAFSCDEC-DFCLHPNCALGE 522 (551)
Q Consensus 490 ~~~~~~c~~-~g~~~~~~~~~~-~~~~~~~~~~~~ 522 (551)
.-.||.|.. .-.|-.|.|..| +|||=-.|-...
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 468999999 668899999999 799999998653
Done!