Query 008848
Match_columns 551
No_of_seqs 362 out of 3122
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 13:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 1.1E-64 3.9E-69 595.5 12.1 481 13-551 301-803 (1304)
2 1ry2_A Acetyl-coenzyme A synth 100.0 2.7E-59 9.1E-64 513.9 45.5 425 114-549 19-468 (663)
3 1pg4_A Acetyl-COA synthetase; 100.0 8.5E-59 2.9E-63 509.5 42.7 419 120-550 23-460 (652)
4 3etc_A AMP-binding protein; ad 100.0 8.2E-53 2.8E-57 455.8 36.5 365 166-550 48-418 (580)
5 4dg8_A PA1221; ANL superfamily 100.0 1.6E-52 5.5E-57 456.2 32.8 318 185-550 36-359 (620)
6 3ni2_A 4-coumarate:COA ligase; 100.0 1.3E-51 4.3E-56 443.2 34.8 340 185-550 31-381 (536)
7 3g7s_A Long-chain-fatty-acid-- 100.0 2.1E-51 7.2E-56 442.8 33.1 344 185-550 28-382 (549)
8 3tsy_A Fusion protein 4-coumar 100.0 1.1E-50 3.9E-55 465.2 39.2 404 122-550 14-428 (979)
9 3c5e_A Acyl-coenzyme A synthet 100.0 4.6E-50 1.6E-54 433.6 38.7 361 164-550 28-399 (570)
10 3e7w_A D-alanine--poly(phospho 100.0 9.3E-51 3.2E-55 434.0 32.6 326 185-550 10-343 (511)
11 3fce_A D-alanine--poly(phospho 100.0 4.7E-51 1.6E-55 436.5 29.7 328 185-550 10-344 (512)
12 3o83_A Peptide arylation enzym 100.0 8.4E-51 2.9E-55 437.5 31.8 343 185-550 39-386 (544)
13 3r44_A Fatty acyl COA syntheta 100.0 4.2E-51 1.4E-55 437.1 28.4 333 185-549 25-361 (517)
14 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4.5E-51 1.6E-55 439.1 28.6 339 185-550 34-377 (539)
15 4fuq_A Malonyl COA synthetase; 100.0 3.7E-50 1.3E-54 428.4 34.6 334 186-550 10-346 (503)
16 1v25_A Long-chain-fatty-acid-C 100.0 2.6E-50 8.9E-55 433.4 32.3 337 185-548 27-378 (541)
17 3rix_A Luciferase, luciferin 4 100.0 1.6E-50 5.4E-55 436.1 30.6 346 186-550 30-386 (550)
18 3rg2_A Enterobactin synthase c 100.0 7.2E-50 2.5E-54 436.5 35.5 337 190-551 39-382 (617)
19 2v7b_A Benzoate-coenzyme A lig 100.0 1.3E-49 4.3E-54 427.2 35.3 349 173-550 23-377 (529)
20 4gr5_A Non-ribosomal peptide s 100.0 2.9E-50 1E-54 435.7 30.4 320 185-550 84-408 (570)
21 3ivr_A Putative long-chain-fat 100.0 7.8E-50 2.7E-54 426.8 32.1 331 185-550 15-346 (509)
22 2d1s_A Luciferase, luciferin 4 100.0 1.4E-49 4.7E-54 428.2 34.0 339 186-550 36-388 (548)
23 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.9E-49 1.3E-53 420.8 34.7 328 185-550 11-349 (504)
24 3l8c_A D-alanine--poly(phospho 100.0 1.1E-49 3.8E-54 426.9 30.3 326 185-550 13-347 (521)
25 1amu_A GRSA, gramicidin synthe 100.0 3E-49 1E-53 426.7 32.5 318 185-550 48-371 (563)
26 3t5a_A Long-chain-fatty-acid-- 100.0 6.5E-50 2.2E-54 424.4 23.9 336 185-550 33-419 (480)
27 3ite_A SIDN siderophore synthe 100.0 1.1E-47 3.9E-52 415.1 28.7 333 185-550 29-373 (562)
28 3kxw_A Saframycin MX1 syntheta 100.0 1.4E-47 4.7E-52 417.0 27.9 333 185-550 20-398 (590)
29 3ipl_A 2-succinylbenzoate--COA 100.0 1.8E-47 6.2E-52 407.7 27.9 333 185-542 10-344 (501)
30 3nyq_A Malonyl-COA ligase; A/B 100.0 1.4E-47 4.6E-52 408.6 25.3 312 185-548 31-347 (505)
31 3gqw_A Fatty acid AMP ligase; 100.0 1.3E-46 4.4E-51 408.2 31.2 333 185-550 30-410 (576)
32 4gs5_A Acyl-COA synthetase (AM 100.0 4.8E-30 1.6E-34 260.6 13.0 184 355-546 36-219 (358)
33 3hgu_A EHPF; phenazine, antibi 100.0 1E-29 3.5E-34 259.8 15.4 190 353-550 88-312 (369)
34 2y4o_A Phenylacetate-coenzyme 100.0 3.3E-28 1.1E-32 254.8 17.8 194 352-550 88-289 (443)
35 3qov_A Phenylacetate-coenzyme 100.0 7E-28 2.4E-32 251.8 18.2 194 352-550 81-282 (436)
36 2y27_A Phenylacetate-coenzyme 99.9 7E-27 2.4E-31 244.3 18.8 194 352-550 86-287 (437)
37 2jgp_A Tyrocidine synthetase 3 98.6 2.4E-10 8.4E-15 121.5 -9.5 126 13-146 374-509 (520)
38 4hvm_A Tlmii; PSI-biology, mid 98.2 1.6E-08 5.3E-13 106.8 -9.3 128 13-150 299-464 (493)
39 1l5a_A Amide synthase, VIBH; n 98.1 1.2E-08 4E-13 105.8 -12.3 132 13-155 278-419 (436)
40 2xhg_A Tyrocidine synthetase A 96.6 1.4E-05 4.7E-10 83.3 -10.3 122 12-144 308-454 (466)
41 1q9j_A PAPA5, polyketide synth 91.7 0.0038 1.3E-07 63.5 -7.0 104 23-144 297-414 (422)
42 2y27_A Phenylacetate-coenzyme 89.2 3.6 0.00012 41.5 12.9 101 188-290 87-192 (437)
43 2y4o_A Phenylacetate-coenzyme 88.6 4 0.00014 41.2 12.8 100 189-290 90-194 (443)
44 3qov_A Phenylacetate-coenzyme 88.6 3.3 0.00011 41.8 12.1 99 191-290 86-188 (436)
45 3rix_A Luciferase, luciferin 4 78.9 6.6 0.00023 41.0 9.5 101 355-460 34-137 (550)
46 3ivr_A Putative long-chain-fat 77.7 14 0.00047 38.0 11.4 96 354-459 19-117 (509)
47 3g7s_A Long-chain-fatty-acid-- 75.8 19 0.00065 37.4 12.0 105 354-460 32-139 (549)
48 1v25_A Long-chain-fatty-acid-C 74.6 21 0.00073 36.9 12.0 100 354-459 31-133 (541)
49 3hgu_A EHPF; phenazine, antibi 74.0 16 0.00054 35.7 10.3 99 189-290 89-215 (369)
50 3c5e_A Acyl-coenzyme A synthet 72.1 26 0.0009 36.5 12.0 102 354-460 56-161 (570)
51 3ni2_A 4-coumarate:COA ligase; 71.9 16 0.00054 37.9 10.1 98 354-459 35-135 (536)
52 1t5h_X 4-chlorobenzoyl COA lig 71.0 28 0.00097 35.5 11.8 98 354-459 15-117 (504)
53 3t5a_A Long-chain-fatty-acid-- 69.4 36 0.0012 34.3 12.1 104 354-461 37-148 (480)
54 1pg4_A Acetyl-COA synthetase; 68.8 26 0.00089 37.3 11.2 96 354-453 89-187 (652)
55 3etc_A AMP-binding protein; ad 67.4 33 0.0011 35.9 11.5 95 354-453 69-166 (580)
56 3r44_A Fatty acyl COA syntheta 67.0 31 0.0011 35.4 11.1 96 354-457 29-127 (517)
57 1ry2_A Acetyl-coenzyme A synth 66.9 33 0.0011 36.6 11.5 97 354-454 95-195 (663)
58 1amu_A GRSA, gramicidin synthe 66.4 32 0.0011 35.9 11.1 96 354-459 52-150 (563)
59 4fuq_A Malonyl COA synthetase; 64.8 31 0.0011 35.3 10.5 80 375-455 28-110 (503)
60 3kxw_A Saframycin MX1 syntheta 61.9 60 0.002 33.7 12.3 101 354-460 24-130 (590)
61 4gr5_A Non-ribosomal peptide s 61.2 40 0.0014 35.1 10.7 92 354-455 88-182 (570)
62 3o83_A Peptide arylation enzym 60.5 40 0.0014 34.8 10.5 90 354-453 43-135 (544)
63 2v7b_A Benzoate-coenzyme A lig 60.3 32 0.0011 35.4 9.6 96 354-459 36-134 (529)
64 2d1s_A Luciferase, luciferin 4 58.3 33 0.0011 35.6 9.3 85 374-459 51-138 (548)
65 1mdb_A 2,3-dihydroxybenzoate-A 57.8 1.2E+02 0.004 31.1 13.5 99 188-290 179-282 (539)
66 4b2g_A GH3-1 auxin conjugating 54.5 4.7 0.00016 42.5 1.9 31 353-383 96-127 (609)
67 3l8c_A D-alanine--poly(phospho 53.4 51 0.0018 33.7 9.8 90 354-453 17-109 (521)
68 3ipl_A 2-succinylbenzoate--COA 51.6 45 0.0015 33.9 8.9 90 354-453 14-103 (501)
69 3fce_A D-alanine--poly(phospho 51.4 55 0.0019 33.4 9.6 89 354-452 14-105 (512)
70 3tsy_A Fusion protein 4-coumar 51.2 54 0.0018 36.8 10.2 95 354-456 74-171 (979)
71 3e7w_A D-alanine--poly(phospho 46.0 97 0.0033 31.5 10.5 99 188-290 140-244 (511)
72 3ite_A SIDN siderophore synthe 43.1 1.4E+02 0.0048 30.7 11.3 97 354-453 33-134 (562)
73 3vc3_A Beta-cyanoalnine syntha 42.8 95 0.0032 29.9 9.2 71 219-289 71-142 (344)
74 4epl_A Jasmonic acid-amido syn 42.6 8.1 0.00028 40.5 1.4 31 353-383 95-126 (581)
75 4dg8_A PA1221; ANL superfamily 41.7 1E+02 0.0036 32.4 10.1 89 354-452 40-131 (620)
76 3ezx_A MMCP 1, monomethylamine 41.1 1.5E+02 0.005 26.4 9.5 81 407-490 104-194 (215)
77 4h1h_A LMO1638 protein; MCCF-l 40.1 92 0.0032 29.8 8.5 68 230-298 9-96 (327)
78 4eql_A 4-substituted benzoates 40.1 9.5 0.00032 40.0 1.5 31 353-383 90-121 (581)
79 3gqw_A Fatty acid AMP ligase; 38.0 1.1E+02 0.0039 31.3 9.7 86 373-459 47-142 (576)
80 3rg2_A Enterobactin synthase c 37.2 1E+02 0.0035 32.3 9.1 89 355-453 39-130 (617)
81 3tbh_A O-acetyl serine sulfhyd 33.9 1.6E+02 0.0053 28.2 9.1 78 211-289 49-127 (334)
82 3nyq_A Malonyl-COA ligase; A/B 33.6 1.5E+02 0.005 30.1 9.5 88 355-454 37-124 (505)
83 4e5s_A MCCFLIKE protein (BA_56 33.2 1.3E+02 0.0044 28.8 8.3 69 230-299 9-97 (331)
84 3tla_A MCCF; serine protease, 33.0 1.3E+02 0.0045 29.4 8.3 70 230-299 40-128 (371)
85 3sr3_A Microcin immunity prote 32.6 1.4E+02 0.0049 28.6 8.5 69 230-299 10-98 (336)
86 3ri6_A O-acetylhomoserine sulf 28.2 2.4E+02 0.0082 27.9 9.7 57 230-288 118-175 (430)
87 3ju7_A Putative PLP-dependent 26.6 1.6E+02 0.0056 28.4 8.0 61 224-287 68-136 (377)
88 3dzz_A Putative pyridoxal 5'-p 25.5 2.5E+02 0.0085 26.7 9.2 56 230-288 106-168 (391)
89 1eg5_A Aminotransferase; PLP-d 25.2 2.6E+02 0.009 26.4 9.3 58 230-288 86-147 (384)
90 2ayi_A Aminopeptidase T; metal 24.6 1.6E+02 0.0054 29.2 7.3 73 216-288 5-104 (408)
91 2e7j_A SEP-tRNA:Cys-tRNA synth 23.2 4.3E+02 0.015 24.7 10.4 57 230-289 90-156 (371)
92 4gs5_A Acyl-COA synthetase (AM 21.3 2.4E+02 0.0083 26.9 8.0 94 189-289 35-132 (358)
93 3kki_A CAI-1 autoinducer synth 21.2 5.5E+02 0.019 24.5 11.2 72 230-306 140-211 (409)
94 3a2b_A Serine palmitoyltransfe 21.0 4.5E+02 0.015 25.0 10.1 56 230-289 124-182 (398)
95 1zl0_A Hypothetical protein PA 20.8 2.6E+02 0.0089 26.4 7.7 69 230-298 14-98 (311)
96 3acd_A Hypoxanthine-guanine ph 20.3 1.3E+02 0.0046 25.8 5.2 42 209-251 13-55 (181)
97 4hvk_A Probable cysteine desul 20.0 2.7E+02 0.0092 26.2 8.1 59 230-289 85-147 (382)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-64 Score=595.48 Aligned_cols=481 Identities=15% Similarity=0.106 Sum_probs=373.5
Q ss_pred HHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC---------
Q 008848 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--------- 82 (551)
Q Consensus 13 ~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~--------- 82 (551)
.++++++++++.+|.++|+++++...++ +||++||++ |++.++ ++|+ ||+||++++.+...
T Consensus 301 tlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~------~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 371 (1304)
T 2vsq_A 301 VVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD------QPKL--IDHIIVFENYPLQDAKNEESSEN 371 (1304)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS------CSSS--CCCEEEECSSCHHHHSCCCHHHH
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC------CCcc--cceeEEEeecccccccccccccC
Confidence 4578899999999999999999998887 999999999 999885 3577 99999988753110
Q ss_pred CccccC-CcchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--ccCC
Q 008848 83 PLYWFP-SLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRT 158 (551)
Q Consensus 83 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~ 158 (551)
...... .....++|||.+.+. .++++.+.+ |+. ++|++.+++++.++|.++++++..+++.+...+ +...
T Consensus 372 g~~~~~~~~~~~~~~dL~l~~~-~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~ 445 (1304)
T 2vsq_A 372 GFDMVDVHVFEKSNYDLNLMAS-PGDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDR 445 (1304)
T ss_dssp SEEEEEEEECCCCCSSEEEEEE-CSSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHH
T ss_pred CceeEeeecccccccCeEEEEe-cCCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHH
Confidence 000000 011356778777653 356788888 999 999999999999999999999875555444332 2222
Q ss_pred CCCCCCCCcCCCCcchhhhhhccc--cccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCE
Q 008848 159 DKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~ 235 (551)
++......|+.+...... .+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++
T Consensus 446 e~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~ 516 (1304)
T 2vsq_A 446 EREFLLTGLNPPAQAHET-KPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSV 516 (1304)
T ss_dssp HHHHHHTTTSCCCCCCCC-CCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHhcCCCCCCCCC-CCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCE
Confidence 222223456654332211 22221 235689999999998776 999999999999999999999 999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEec
Q 008848 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP 315 (551)
Q Consensus 236 V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 315 (551)
|+|+++|++++++++|||+|+|++|||+||.+|.+|+.+++++++++++|++.........++ .....+++.
T Consensus 517 V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~~~~~~~ 588 (1304)
T 2vsq_A 517 VALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTGTTLFID 588 (1304)
T ss_dssp EEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCSEEEESS
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCCcEEEec
Confidence 999999999999999999999999999999999999999999999999999875421110000 001111111
Q ss_pred CCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCC
Q 008848 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (551)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 395 (551)
. ...... .. ........++++|||+|||||||+||||+++|+++.+. .+....++++
T Consensus 589 ~---------------~~~~~~-~~------~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~ 645 (1304)
T 2vsq_A 589 D---------------QTRFEE-QA------SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFS 645 (1304)
T ss_dssp C---------------GGGGGS-CS------SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCC
T ss_pred c---------------cccccc-cc------CCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCC
Confidence 0 000100 00 11223456799999999999999999999999999876 5556678899
Q ss_pred CCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC--CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCc
Q 008848 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (551)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~--~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sL 473 (551)
++|+++++++++|+.+.+++|.+|+.|+++++.+. ..++..+.+.|++++||++.++|++++.|.+.. ...+++|
T Consensus 646 ~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~l 722 (1304)
T 2vsq_A 646 DQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGL 722 (1304)
T ss_dssp TTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCc
Confidence 99999999999999999999999999999999874 347889999999999999999999999998643 2236789
Q ss_pred cEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcC---CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.+++|||++++++.+++.+.++.++++|.||+||++++++..... ......+||+|++|++++|+|++++++|+|+
T Consensus 723 r~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~ 802 (1304)
T 2vsq_A 723 RCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGA 802 (1304)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred cEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCC
Confidence 9999999999999999888887777999999999998765543221 2234578999999999999999999999997
Q ss_pred C
Q 008848 551 S 551 (551)
Q Consensus 551 ~ 551 (551)
.
T Consensus 803 ~ 803 (1304)
T 2vsq_A 803 V 803 (1304)
T ss_dssp C
T ss_pred c
Confidence 4
No 2
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.7e-59 Score=513.85 Aligned_cols=425 Identities=22% Similarity=0.340 Sum_probs=340.2
Q ss_pred CCCCccchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCC---C-CCCCCCCcCCCCcchhhhhhccccccCCCC
Q 008848 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (551)
Q Consensus 114 y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (551)
+...+.+|..++++++++++.||..+++.. +.|.+++.++++.. . ......+|+.++.+|.+.+++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 444556789999999999999999999862 57889999998764 2 1223368999999999999998765 679
Q ss_pred CCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCC
Q 008848 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (551)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~ 267 (551)
||++|+++.+. ..+..+++||+||+++++++|++|+ ++ |++||+|+|+++|++++++++|||+++|++++|+++.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1234568999999999999999999 89 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc---CCC--ceEEecCCCC-CCCCCCCCCCcchHHhhccCCC
Q 008848 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---APL--KAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 268 ~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---~~~--~~~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
+.+++.++++++++++||+++...+.++.++....+.+. .+. .++++..... ... ........|+++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-FHAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC-CCSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc-cCCCccccHHHHHhhcCC
Confidence 999999999999999999998876666655544433332 221 2344432211 000 011233557776654321
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHH-HhhhhcCCCCCCEEEEecCcccchhh-HHHHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l 419 (551)
..+.....++|++||+|||||||+||||+++|++++.... .....++++++|++++.++++|+++. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345679999999999999999999999999876554 34456889999999999999999998 6789999
Q ss_pred HhCCEEEEecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHh
Q 008848 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (551)
Q Consensus 420 ~~G~~lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 494 (551)
+.|++++++++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++++++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999753 478899999999999999999999999987643 345678999999999999999999999988
Q ss_pred cc--CCceeccccccccccccccCCc--CCCCCcCccCCCCCCceEEEECC-CCCccCC-C
Q 008848 495 AW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYVR-T 549 (551)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~-G 549 (551)
++ .++++|.||+||+++.++...+ ..+.+.+++|+|++|++++|+|+ +|+++|+ |
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g 468 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH 468 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCC
Confidence 75 3789999999999865554432 23456789999999999999998 8999987 5
No 3
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=8.5e-59 Score=509.52 Aligned_cols=419 Identities=25% Similarity=0.372 Sum_probs=337.3
Q ss_pred chHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCC-CCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEEe
Q 008848 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (551)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~ 198 (551)
+|..+.++++++++.||..+++. +.|.+++.++++.... ..+..+|+.++..|...+++++++ +++||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEE
Confidence 57888999999999999999886 6788888888765321 133568999999999999887754 678999999985
Q ss_pred cCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 008848 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (551)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~ 277 (551)
+. ..+..+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred cC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 43 123456999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeecceeccCccccchhHHhh---cCC----CceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCC
Q 008848 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (551)
Q Consensus 278 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~---~~~----~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (551)
++++++||+++...+.++.++....+.+ ..+ ..++++......... .......|++++..... ....
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCc
Confidence 9999999999887666555544433322 221 233444322111000 01123457777654321 1222
Q ss_pred CCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHH-HhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEEe
Q 008848 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (551)
Q Consensus 351 ~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~ 428 (551)
....++|++||+|||||||+||||+++|++++.... .....++++++|++++.+|++|+++. +.++.+|++|++++++
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 345679999999999999999999999999876653 44456889999999999999999998 7789999999999999
Q ss_pred cCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhcc--CCcee
Q 008848 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (551)
Q Consensus 429 ~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (551)
++. +++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++++++.+.++ .++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 753 478899999999999999999999999987643 34567899999999999999999999988775 37899
Q ss_pred ccccccccccccccCCc-CCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||+++.++...+ ..+.+.+++|+|++|++++|+|++|+++|.|.
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~ 460 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT 460 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCc
Confidence 99999999876554332 23456789999999999999999999999874
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=8.2e-53 Score=455.82 Aligned_cols=365 Identities=16% Similarity=0.134 Sum_probs=291.1
Q ss_pred CcCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 008848 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (551)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~ 244 (551)
.|......|....++++++ +++||++|+++.+. .+..+++||+||+++++++|++|+++ +++||+|+|+++|++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~ 122 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY 122 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT
T ss_pred CCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence 5665666777777776654 78999999998543 23456999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC---CceEEecCCCCCC
Q 008848 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDV 321 (551)
Q Consensus 245 e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~vv~~~~~~~ 321 (551)
++++++|||+|+|++++|++|.++.+++.+++++++++++|++.+.. .......+....+ ...+.+...
T Consensus 123 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (580)
T 3etc_A 123 DFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD---- 194 (580)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS----
T ss_pred HHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc----
Confidence 99999999999999999999999999999999999999999987521 0012222222222 223333211
Q ss_pred CCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEE
Q 008848 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (551)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l 401 (551)
...+..++.+........ ...........++|++||+|||||||.||||+++|++++..+......+++.++++++
T Consensus 195 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (580)
T 3etc_A 195 ---VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHY 270 (580)
T ss_dssp ---CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEE
T ss_pred ---cccccccHHHHHhhCCcc-cccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEE
Confidence 112445566665543320 0001111245679999999999999999999999999888777666667889999999
Q ss_pred EecCcccchhhHH-HHHHHHhCCEEEEec-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEee
Q 008848 402 WPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (551)
Q Consensus 402 ~~~~~~~~~~~~~-~~~~l~~G~~lvl~~-~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~g 479 (551)
+.++++|+.+.+. ++.+++.|+++++.+ ..+++..+++.|+++++|++.++|++++.|.+.. ....++++||.+++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~g 349 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVA 349 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEEC
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEc
Confidence 9999999988875 788999999999985 4678999999999999999999999999998763 445678999999999
Q ss_pred cCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||++++++.+++.+.++ ++++|.||+||+++.++.. +......+++|+|++|++++|+|++|+++|+|.
T Consensus 350 Ge~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~ 418 (580)
T 3etc_A 350 GEPLNPEVFNRFLEFTG-IKLMEGFGQTETVVTIATF-PWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGE 418 (580)
T ss_dssp SSCCCHHHHHHHHHHHS-CCCEEEECCTTSSCCEECC-TTSCCCTTCCBEECTTCEEEEECTTSCBCCTTC
T ss_pred cCCCCHHHHHHHHHHhC-CeEecccccccccceeecC-CCCCCCCCccccCCCCCEEEEECCCCCCCCCCC
Confidence 99999999999988765 8999999999998654433 333556789999999999999999999999986
No 5
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.6e-52 Score=456.20 Aligned_cols=318 Identities=17% Similarity=0.127 Sum_probs=264.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++|+|+
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 5688999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
||.+|.+++.++++++++++++++.......... .... +......
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~~~~------------------~~~~~~~----- 152 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL------------PCVP------------------VRHLPAA----- 152 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS------------CEEE------------------GGGCCCC-----
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccCC------------ceee------------------eccCCcC-----
Confidence 9999999999999999999999765421100000 0000 0000000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
..........++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+++++|.+|+.|+
T Consensus 153 -~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 153 -PASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp -CCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred -CccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 0111122346799999999999999999999999999877655 45678999999999999999999999999999999
Q ss_pred EEEEec-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceec
Q 008848 424 TLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (551)
Q Consensus 424 ~lvl~~-~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (551)
++++.+ ..+++..+++.|+++++|++.++|++++.|.+.. ..++++||.+++|||++++++.+++...+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 999975 3468899999999999999999999999998643 345889999999999999998888887777789999
Q ss_pred cccccccccccccCCc---CCCCCcCccCCCCCCceEEEECCCCCc-cCCCC
Q 008848 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YVRTF 550 (551)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~g~~v~IlD~~g~~-vp~Gv 550 (551)
.||+||+++.++.... ......+++|+|++|++++|+|++|++ +|+|+
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~ 359 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDR 359 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSC
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCC
Confidence 9999999875443222 123456799999999999999999988 78886
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.3e-51 Score=443.22 Aligned_cols=340 Identities=19% Similarity=0.208 Sum_probs=278.5
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 45789999999986321 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++.... .............+++++.. ..+...++++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987532 12222222222233333211 1233455565543221
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh----hcCCCCCCEEEEecCcccchhh-HHHHHH
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (551)
..+.....++|++||+|||||||.||||+++|+++++.+.+... .+.+.++|++++.+|++|+.++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233456899999999999999999999999999887765433 3568899999999999999998 457889
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCC
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (551)
+..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++++.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999987 57889999999999999999999999999987666667899999999999999999999999998778
Q ss_pred ceeccccccccccccccCCc----CCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 499 AIIESCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+++|.||+||++..++.... ......+++|+|++|++++|+| ++|+++|+|.
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~ 381 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQ 381 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTC
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCC
Confidence 99999999999865433211 1234568999999999999999 6799999986
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.1e-51 Score=442.78 Aligned_cols=344 Identities=15% Similarity=0.098 Sum_probs=282.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 28 ~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 28 AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEcc
Confidence 457899999999987322223445999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
||.++.+++.+++++++++++|++.... ..............+++.. ....++.++......
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-- 169 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSE-- 169 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCS--
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCcc--
Confidence 9999999999999999999999997532 2222333333322222221 123356666654432
Q ss_pred CCCCCCCCCCC-CCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhC
Q 008848 344 RPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (551)
Q Consensus 344 ~~~~~~~~~~~-~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (551)
........ ++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.++..|
T Consensus 170 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 246 (549)
T 3g7s_A 170 ---DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVG 246 (549)
T ss_dssp ---CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHC
T ss_pred ---ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcC
Confidence 11122223 38999999999999999999999999999988888888999999999999999999987788899999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCC--CCCCCccEEEeecCCCChhhHHHHHHh----cc
Q 008848 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSK----AW 496 (551)
Q Consensus 423 ~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~--~~l~sLr~i~~gGe~l~~~~~~~~~~~----~~ 496 (551)
+++++.+ .+++..+++.|+++++|++.++|++++.|++...... .++++||.+++|||++++++.+++.+. ++
T Consensus 247 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 247 NEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred ceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcC
Confidence 9999987 6789999999999999999999999999987643332 578999999999999999999888776 43
Q ss_pred --CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 497 --YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
.++++|.||+||+++.++..........+++|+|++|++++|+| ++|+++|+|.
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~ 382 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGE 382 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTC
T ss_pred CccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCC
Confidence 37899999999998766555444445678999999999999999 8999999986
No 8
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.1e-50 Score=465.21 Aligned_cols=404 Identities=17% Similarity=0.161 Sum_probs=284.5
Q ss_pred HHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEEecCC
Q 008848 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDR 201 (551)
Q Consensus 122 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~ 201 (551)
++.+..+++++..++..+++.+......+.....-... ..........+.. ..+. .+++++||++|+++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl~-~~l~--~~a~~~pd~~Al~~~~~~ 86 (979)
T 3tsy_A 14 LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSLH-DYIF--QNISEFATKPCLINGPTG 86 (979)
T ss_dssp -------------------------------CCCBCCS----SCCCCCCTTSCHH-HHHT--TTGGGTTTSEEEEETTTC
T ss_pred cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCHH-HHHH--HHHHhCCCCeEEEECCCC
Confidence 88999999999999999988875444333222211110 0000001112222 2222 245889999999986321
Q ss_pred CCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcC
Q 008848 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280 (551)
Q Consensus 202 ~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~ 280 (551)
+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++
T Consensus 87 ------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~ 160 (979)
T 3tsy_A 87 ------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160 (979)
T ss_dssp ------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHT
T ss_pred ------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcC
Confidence 3899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEE
Q 008848 281 AKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360 (551)
Q Consensus 281 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 360 (551)
+++||+++.+. +....+.......++.+.... ......+...+.++...... ...........++|++|
T Consensus 161 ~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ 229 (979)
T 3tsy_A 161 TKLIITEARYV------DKIKPLQNDDGVVIVCIDDNE---SVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVA 229 (979)
T ss_dssp EEEEEECSTTT------TTSHHHHHTSCCEEEECCCCT---TSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEE
T ss_pred CeEEEEChHHH------HHHHHHhhcCCceEEEeCCcc---cccCCcccccHHHHhhcccc--ccccCCcCCCCccceEE
Confidence 99999997642 223333322222333332211 11112233445555433221 00112233457899999
Q ss_pred EEecCCCCCCCceEEecchhhHHHHHHhhh----hcCCCCCCEEEEecCcccchhhH-HHHHHHHhCCEEEEecCCCChh
Q 008848 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLER 435 (551)
Q Consensus 361 iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~~lvl~~~~~~~~ 435 (551)
|+|||||||+||||+++|+++++.+.+... .+.+.++|++++.+|++|+.++. .++.++..|+++++.+ .+++.
T Consensus 230 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~ 308 (979)
T 3tsy_A 230 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEIN 308 (979)
T ss_dssp CCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHH
T ss_pred EEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHH
Confidence 999999999999999999999887765533 45688999999999999999984 4788899999999987 56889
Q ss_pred hHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecccccccccccccc
Q 008848 436 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 515 (551)
Q Consensus 436 ~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 515 (551)
.+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+++++++|.||+||++..++.
T Consensus 309 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~ 388 (979)
T 3tsy_A 309 LLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388 (979)
T ss_dssp HHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEE
T ss_pred HHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHh
Confidence 99999999999999999999999998766667789999999999999999999999999887999999999999865443
Q ss_pred CC----cCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 516 GS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 516 ~~----~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
.. ...+...+++|+|++|++++|+| ++|+++|+|.
T Consensus 389 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~ 428 (979)
T 3tsy_A 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQ 428 (979)
T ss_dssp CGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTC
T ss_pred CCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCC
Confidence 21 12234568999999999999999 5699999986
No 9
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.6e-50 Score=433.60 Aligned_cols=361 Identities=19% Similarity=0.211 Sum_probs=283.0
Q ss_pred CCCcCCCCcchhhhhhccccc---cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEE
Q 008848 164 GGTWLPGSVLNIAECCLLPSN---HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAI 238 (551)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~---~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i 238 (551)
...|......+....++.+++ +++++||++|+++.+. .+..+++||+||+++++++|++|++. +++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~---~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNG---KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECS---SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcC---CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 345655555565555555432 1334999999998542 12245899999999999999999986 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecC
Q 008848 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPA 316 (551)
Q Consensus 239 ~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~ 316 (551)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++... +....+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999987532 122222222332 1222321
Q ss_pred CCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH--HHHHhhhhcCC
Q 008848 317 IGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDL 394 (551)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~--~~~~~~~~~~~ 394 (551)
.. ..+...+++++..... ........+++++||+|||||||.||||+++|+ ++. ..... ..+++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~ 244 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL 244 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC
T ss_pred cC-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC
Confidence 11 1123456666544322 112233467899999999999999999999999 544 34444 66788
Q ss_pred CCCCEEEEecCcccchhhH-HHHHHHHhCCEEEEecC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCC
Q 008848 395 KVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (551)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~~lvl~~~-~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~s 472 (551)
+++|++++.+|++|+.+++ .++.++..|+++++.+. .+++..+++.|+++++|++.++|++++.|.+.. ....++++
T Consensus 245 ~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~ 323 (570)
T 3c5e_A 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPH 323 (570)
T ss_dssp CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTT
T ss_pred CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccccccc
Confidence 9999999999999999986 68899999999999864 568899999999999999999999999998763 33456899
Q ss_pred ccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 473 Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||.+++|||++++++.+++.+.++ ++++|.||+||+++.++.. .......+++|+|++|++++|+|++|+++|+|.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~ 399 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQTG-LDIRESYGQTETGLTCMVS-KTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT 399 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHHS-CCCEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCCEEEECTTSCBCCTTC
T ss_pred ceEEEEcCCcCCHHHHHHHHHHhC-CchhhccchhhcccceecC-cccccCCCcccccCCCceEEEECCCCCCCCCCC
Confidence 999999999999999999988774 8899999999998654432 223446689999999999999999999999985
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=9.3e-51 Score=434.05 Aligned_cols=326 Identities=18% Similarity=0.165 Sum_probs=275.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
+++++||++|+++.++ ++||+||+++++++|++|++. +++|++|+++++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 81 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81 (511)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence 4578999999998776 999999999999999999885 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
++|.++.+++.+++++++++++|+++..... . ... ......++++......
T Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-----~-------~~~----------------~~~~~~~~~~~~~~~~- 132 (511)
T 3e7w_A 82 VDLSIPSERIAKIIESSGAELLIHAAGLSID-----A-------VGQ----------------QIQTVSAEELLENEGG- 132 (511)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEESSSCCTT-----C-------CCC----------------SSCEEEHHHHHTSCSC-
T ss_pred cCCCChHHHHHHHHHhCCCCEEEecccccch-----h-------ccc----------------ccceecHhhhhccccC-
Confidence 9999999999999999999999997642100 0 000 0012234444433221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhC
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (551)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|
T Consensus 133 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 209 (511)
T 3e7w_A 133 ---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSG 209 (511)
T ss_dssp ---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTT
T ss_pred ---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcC
Confidence 11122345678999999999999999999999999999998888889999999999999999999998899999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 423 ~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
+++++.+.. .++..+++.|+++++|++.++|++++.++........+++++|.+++|||++++++.+++.+.++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i 289 (511)
T 3e7w_A 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKI 289 (511)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEE
Confidence 999997632 478889999999999999999999999998765566678999999999999999999999999977899
Q ss_pred eccccccccccccccCCcC----CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+|.||+||+++.++..... ......++|+|++|++++|+|++|+++|+|.
T Consensus 290 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~ 343 (511)
T 3e7w_A 290 FNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGE 343 (511)
T ss_dssp EECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTC
T ss_pred EeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCC
Confidence 9999999998654432221 2334568999999999999999999999986
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=4.7e-51 Score=436.52 Aligned_cols=328 Identities=17% Similarity=0.196 Sum_probs=271.2
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 10 ~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl 81 (512)
T 3fce_A 10 WAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPV 81 (512)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 3478999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++....... .. ..++. ...+.++......
T Consensus 82 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~------------~~--~~~~~-------------~~~~~~~~~~~~~-- 132 (512)
T 3fce_A 82 DLSIPADRVQRIAENSGAKLLLSATAVTVTD------------LP--VRIVS-------------EDNLKDIFFTHKG-- 132 (512)
T ss_dssp ETTSCHHHHHHHHHHSCCCEEEESSCCCSSC------------CS--SEEEE-------------THHHHHHHHHTTT--
T ss_pred CCCCcHHHHHHHHHhcCCCEEEecCcccccc------------cc--cceec-------------hhhhhhhcccccc--
Confidence 9999999999999999999999986421100 00 00110 0012222211111
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|+
T Consensus 133 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 211 (512)
T 3fce_A 133 -NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGG 211 (512)
T ss_dssp -CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTC
T ss_pred -cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCC
Confidence 1111223456799999999999999999999999999999988888899999999999999999999988999999999
Q ss_pred EEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 424 TLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 424 ~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
++++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++|||++++++.+++.+.+++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~ 291 (512)
T 3fce_A 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIM 291 (512)
T ss_dssp EEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred EEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEE
Confidence 99998642 4788999999999999999999999999887666667799999999999999999999999999878999
Q ss_pred ccccccccccccccCCcC----CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||+++.++..... ......++|+|+++++++|+|++|+++|+|.
T Consensus 292 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~ 344 (512)
T 3fce_A 292 NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGE 344 (512)
T ss_dssp EEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTS
T ss_pred eCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCC
Confidence 999999998754432221 1235578999999999999999999999985
No 12
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=8.4e-51 Score=437.49 Aligned_cols=343 Identities=16% Similarity=0.133 Sum_probs=273.7
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 4578999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
++.++.+++.+++++++++++|++...... ........+...... ..+++.... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDWIETPAE- 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHHHHSCCS-
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhhhhcccc-
Confidence 999999999999999999999998753210 001112222222222 222222111 011234444433221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH--HHHHHHH
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~ 420 (551)
.........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++..|++|.++.. .++.+++
T Consensus 181 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 257 (544)
T 3o83_A 181 ---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257 (544)
T ss_dssp ---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHH
Confidence 11111345679999999999999999999999999999998888889999999999999999877764 5889999
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
.|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.++ +++
T Consensus 258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~~ 335 (544)
T 3o83_A 258 AGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN-CKL 335 (544)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC-SEE
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC-CcE
Confidence 999999987 468899999999999999999999999998765444556889999999999999999999988774 899
Q ss_pred eccccccccccccccCCcCCCCCcCccCCCC-CCceEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~g~~v~IlD~~g~~vp~Gv 550 (551)
+|.||+||+++.++..........+++|+|+ ++++++|+|++|+++|+|.
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~ 386 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGE 386 (544)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTC
T ss_pred EeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCC
Confidence 9999999987654332222223346899997 8999999999999999986
No 13
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=4.2e-51 Score=437.13 Aligned_cols=333 Identities=21% Similarity=0.166 Sum_probs=270.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+++.+. .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 25 ~a~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPST------DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGG------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCc------CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 4578999999998643 24899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
+|.++.+++.+++++++++++|++.... +....+...... .++.+. ....+.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHHHHhhccCc
Confidence 9999999999999999999999987532 122222221111 111110 01123333333221
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
..+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 122334567999999999999999999999999999998888888999999999999999999999876667779
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++... +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999986 5789999999999999999999999999987655455678999999999999999999988876 58999
Q ss_pred ccccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCC
Q 008848 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRT 549 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~G 549 (551)
|.||+||+++.++..... .....+++|+|+++++++|+|++|+++|.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g 361 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG 361 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC
Confidence 999999998654443322 245678999999999999999999999876
No 14
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4.5e-51 Score=439.07 Aligned_cols=339 Identities=15% Similarity=0.111 Sum_probs=271.1
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 34 ~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 34 RAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105 (539)
T ss_dssp HHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecC
Confidence 3478999999998766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
+|.++.+++.+++++++++++|+++.... .........+....+. +.+++.... ..+.++......
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~- 172 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE- 172 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC-
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc-
Confidence 99999999999999999999999875310 0000112222222222 222221110 012222221111
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH--HHHHHHH
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~ 420 (551)
........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+.++. .++.+|+
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 248 (539)
T 1mdb_A 173 ----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248 (539)
T ss_dssp ----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ----ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHH
Confidence 1112344678999999999999999999999999999888877788999999999999999998875 5899999
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
.|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.++ +++
T Consensus 249 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~ 326 (539)
T 1mdb_A 249 AGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTL 326 (539)
T ss_dssp TTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-SEE
T ss_pred hCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC-CcE
Confidence 999999976 478899999999999999999999999998765445567899999999999999999999988775 899
Q ss_pred eccccccccccccccCCcCCCCCcCccCCCCCCc-eEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~-~v~IlD~~g~~vp~Gv 550 (551)
+|.||+||+++.++..........+++|+|+++. +++|+|++|+++|+|.
T Consensus 327 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~ 377 (539)
T 1mdb_A 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE 377 (539)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTC
T ss_pred EEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCC
Confidence 9999999976543221111112346899999764 8999999999999986
No 15
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3.7e-50 Score=428.36 Aligned_cols=334 Identities=18% Similarity=0.142 Sum_probs=268.9
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+...... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+|
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 4678888887753210 13899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
|.++.+++.+++++++++++|+++... .....+.......+..+... ....+.+.......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--- 145 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAGASE--- 145 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSCS---
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhcCCC---
Confidence 999999999999999999999997642 22222222222222222111 11112222211111
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH-HHHHHHHhCC
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~ 423 (551)
........++|+|||+|||||||.||||+++|+++.+...+....++++++|++++.+|++|+.+.+ .++.+++.|+
T Consensus 146 --~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 146 --AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp --CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred --CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1222345679999999999999999999999999999988888889999999999999999998864 4678899999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
++++.+ .+++..+++.++ ++|++.++|+++..|++.......+++++|.+++|||++++++.+++...++ ++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccce
Confidence 999987 578899999998 8999999999999999876666667899999999999999999999988775 789999
Q ss_pred ccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
||+||+++.++ .........+++|+|++|++++|+| ++|+++|+|.
T Consensus 300 YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~ 346 (503)
T 4fuq_A 300 YGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGD 346 (503)
T ss_dssp CEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTC
T ss_pred EcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCC
Confidence 99999986533 2323345568899999999999999 8899999986
No 16
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.6e-50 Score=433.38 Aligned_cols=337 Identities=19% Similarity=0.174 Sum_probs=269.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 27 ~a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 27 AAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp HHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEec
Confidence 3478999999996321 2235899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc--eEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
+|.++.+++.+++++++++++|+++.+. +....+....+.. ++++.... ......++++......
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 169 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEEALGEEAD 169 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHHHCCSCCC
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHHHhhccCC
Confidence 9999999999999999999999987532 2222222222221 22222110 0123356665433221
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHh--hhhcCCCCCCEEEEecCcccchhhHHHHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l 419 (551)
.....+++++||+|||||||.||||+++|+++++..... ...++++++|++++.+|++|+.++..++.++
T Consensus 170 --------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l 241 (541)
T 1v25_A 170 --------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 241 (541)
T ss_dssp --------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHH
T ss_pred --------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHH
Confidence 123457899999999999999999999999998776552 3456788999999999999999887788999
Q ss_pred HhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 420 ~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
+.|+++++.+..+++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++ ..+ +++
T Consensus 242 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~ 319 (541)
T 1v25_A 242 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVE 319 (541)
T ss_dssp HHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCE
T ss_pred hcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCc
Confidence 999999998755689999999999999999999999999987544444568999999999999999999988 555 489
Q ss_pred eeccccccccccccccCCcCC----------CCCcCccCCCCCCceEEEECCCCCccCC
Q 008848 500 IIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYVR 548 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~g~~v~IlD~~g~~vp~ 548 (551)
++|.||+||++..++...... ....+++|+|++|++++|+|++|+++|.
T Consensus 320 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~ 378 (541)
T 1v25_A 320 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPK 378 (541)
T ss_dssp EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCS
T ss_pred eeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCC
Confidence 999999999986544432210 0235789999999999999999999984
No 17
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.6e-50 Score=436.07 Aligned_cols=346 Identities=16% Similarity=0.136 Sum_probs=271.7
Q ss_pred CCCCCCceEEE---EecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEE
Q 008848 186 RRKEDNTVAIV---WREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (551)
Q Consensus 186 a~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~v 261 (551)
++++|+++|++ +... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++
T Consensus 30 a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 103 (550)
T 3rix_A 30 MKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103 (550)
T ss_dssp HHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEE
T ss_pred HHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEe
Confidence 46788888865 3211 24899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc-eEEecCCCCCCCCCCCCCCcchHHhhccCC
Q 008848 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340 (551)
Q Consensus 262 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (551)
|++|.++.+++.+++++++++++|+++... +....+....+.. .+++..... ......++.++.....
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 104 PANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKT-----DYQGFQSMYTFVTSHL 172 (550)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSS-----CBTTBCBHHHHHHHHC
T ss_pred ecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCc-----cccCcccHHHHhhccc
Confidence 999999999999999999999999987532 2222333333322 222221111 0123445666554332
Q ss_pred CCCC-CCCC-CCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh---cCCCCCCEEEEecCcccchhhHHH
Q 008848 341 YHPR-PNYY-SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVIL 415 (551)
Q Consensus 341 ~~~~-~~~~-~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~~ 415 (551)
.... .... +.....++++|||+|||||||.||||+++|+++.+.+.+.... +++.+++++++.+|++|+.+++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence 1000 0011 1122245789999999999999999999999998887766544 578899999999999999999888
Q ss_pred HHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhc
Q 008848 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (551)
Q Consensus 416 ~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 495 (551)
+.+++.|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 253 LGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 99999999999986 57889999999999999999999999999987766677899999999999999999999999888
Q ss_pred cCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+...++|.||+||+++.++... ......+++|+|++|++++|+| ++|+++|+|.
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~ 386 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ 386 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECC-TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTC
T ss_pred CCCccccccCcCccccceecCC-CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCC
Confidence 7556999999999987654433 3345678999999999999999 5799999985
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7.2e-50 Score=436.52 Aligned_cols=337 Identities=15% Similarity=0.138 Sum_probs=269.8
Q ss_pred CCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCC
Q 008848 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (551)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~ 268 (551)
||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999998776 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCC
Q 008848 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (551)
Q Consensus 269 ~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (551)
.+++.++++++++++++++....... .......+...... ..+.+.... ....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALFS-GDDFLNTFVTEHSSIRVVQLLNDS---------GEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHHSTTCCEEEEETCC---------STTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEecccccccc-cHHHHHHHhhcCCccceeeecccc---------cccchhhhhccccc-----c
Confidence 99999999999999999997532100 00111222222222 222221111 11234444433221 1
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh--HHHHHHHHhCCEE
Q 008848 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLNGATL 425 (551)
Q Consensus 348 ~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~l~~G~~l 425 (551)
.......++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.++. ++++.+++.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22234567999999999999999999999999999999888888999999999999998876665 4689999999999
Q ss_pred EEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc--CCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 426 vl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
++.+ .+++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++...++ ++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG-CQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTC-SEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhC-CcEEEE
Confidence 9986 46888999999999999999999999998765322 2336899999999999999999999988775 899999
Q ss_pred ccccccccccccCCcCCCCCcCccCCCC-CCceEEEECCCCCccCCCCC
Q 008848 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYVRTFS 551 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~g~~v~IlD~~g~~vp~Gv~ 551 (551)
||+||+++.++...........++|+|+ ++++++|+|++|+++|+|+.
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~ 382 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV 382 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc
Confidence 9999998654432222222346899997 78899999999999999963
No 19
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.3e-49 Score=427.23 Aligned_cols=349 Identities=19% Similarity=0.178 Sum_probs=269.0
Q ss_pred chhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 008848 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (551)
Q Consensus 173 ~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~l 251 (551)
.|.....+..+ ++ +||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|
T Consensus 23 ~~~~~~~l~~~--~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 23 FNFAAYLFRLN--ET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCHHHHHHHHT--GG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred eeHHHHHHHhh--hc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 34344444433 46 999999998765 999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC---CceEEecCCCCCCCCCCCCC
Q 008848 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQ 328 (551)
Q Consensus 252 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~vv~~~~~~~~~~~~~~ 328 (551)
||+++|++++|+++.++.+++.+++++++++++|+++... +.......... ..++++..... ....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----cccc
Confidence 9999999999999999999999999999999999987532 11222222111 12222221100 0001
Q ss_pred CcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhh-HHHHHHhhhhcCCCCCCEEEEecCcc
Q 008848 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLG 407 (551)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (551)
...++++...... ........++|++||+|||||||.||||+++|+++ .+........++++++|++++.+|++
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 161 APLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTT
T ss_pred ccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHH
Confidence 2246666543221 11223456799999999999999999999999998 56665555567889999999999999
Q ss_pred cchhhHH-HHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChh
Q 008848 408 WVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (551)
Q Consensus 408 ~~~~~~~-~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~ 486 (551)
|+.++.. ++.++..|+++++.+..+++..+++.|+++++|++.++|+++..|++..........++|.+++|||+++++
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~ 315 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPRE 315 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHH
Confidence 9999854 678999999999886567889999999999999999999999999876433322123899999999999999
Q ss_pred hHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+.+++.+.++ ++++|.||+||++..++.... .....+++|+|++|++++|+|++|+++|+|.
T Consensus 316 ~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~ 377 (529)
T 2v7b_A 316 IGERFTAHFG-CEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVPGYEIELRDEAGHAVPDGE 377 (529)
T ss_dssp HHHHHHHHHS-CCEEEEEECTTTSSEEEECCT-TCCCTTSCCEECTTCEEEEECTTSCBCCTTS
T ss_pred HHHHHHHHhC-CceeeeEchhhcCceeecccc-CCCccCCcccCCCCCEEEEECCCCCCCCCCC
Confidence 9999988774 899999999999654433322 2245679999999999999999999999985
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.9e-50 Score=435.68 Aligned_cols=320 Identities=18% Similarity=0.170 Sum_probs=265.2
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 84 ~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 84 QAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEc
Confidence 4578999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++...... ......++.... .....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~----------------~~~~~---- 202 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGR-------------LTGTTTLYVEDE----------------AASDA---- 202 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------------SCSSEEEECCC--------------------------
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchhhhc-------------ccCCcceeeecc----------------ccccc----
Confidence 999999999999999999999998753210 111111111000 00000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
..........++|++||+|||||||.||||+++|+++.+...+ ...++++++|++++.+|++|+.+.+.++.+++.|+
T Consensus 203 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 280 (570)
T 4gr5_A 203 -PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280 (570)
T ss_dssp --CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTC
T ss_pred -cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCC
Confidence 0011223456799999999999999999999999998876654 35567899999999999999988888999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceec
Q 008848 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (551)
Q Consensus 424 ~lvl~~~-~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (551)
++++.+. .+++..+++.|+++++|++.++|++++.|.+... .++++||.+++|||++++++.+++.+.+++++++|
T Consensus 281 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 357 (570)
T 4gr5_A 281 RCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357 (570)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE
Confidence 9999864 4688899999999999999999999999987542 34889999999999999999999988887789999
Q ss_pred cccccccccccccCCcC---CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 503 SCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 503 ~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.||+||+++.++..... ......++|+|++|++++|+|++|+++|+|.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~ 408 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGA 408 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCC
Confidence 99999998654432221 2334568999999999999999999999985
No 21
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=7.8e-50 Score=426.78 Aligned_cols=331 Identities=12% Similarity=0.037 Sum_probs=267.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 15 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 15 NAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPV 86 (509)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEec
Confidence 4578999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++..+. ...............++.... ....+.++......
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-- 149 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD-- 149 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC--
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC--
Confidence 9999999999999999999999987532 111111122222222221111 11122233221111
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
.........++|++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++...+.+++.|+
T Consensus 150 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g 227 (509)
T 3ivr_A 150 --TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGG 227 (509)
T ss_dssp --SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred --CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCC
Confidence 112233456799999999999999999999999999999988888899999999999999999999988777777777
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
+.++.. .+++..+++.|+++++|++.++|+++..|++.. ...+++++|.++.||++ +..+++...+++++++|.
T Consensus 228 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 228 ASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp EEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred cEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 777766 678999999999999999999999999998765 34568899999999987 777888888877899999
Q ss_pred ccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||+||+++.++..... ....++|+|++|++++|+|++|+++|+|.
T Consensus 302 YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~ 346 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGE 346 (509)
T ss_dssp EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTC
T ss_pred cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCC
Confidence 9999998754443322 23346999999999999999999999986
No 22
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.4e-49 Score=428.24 Aligned_cols=339 Identities=18% Similarity=0.115 Sum_probs=272.5
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++ |++|+++.+. .+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 36 ~~~~-~~~A~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 36 YAKL-GAIAFTNAVT------GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHH-TCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred hccc-CCceEEEcCC------CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 3567 9999997421 13899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC--CceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
|.++.+++.+++++++++++|+++... +....+....+ ..++++.... ...+...|+++......
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~- 175 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKV------DYRGYQCLDTFIKRNTP- 175 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSS------CBTTBCBHHHHHHHTSC-
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCcc------cccccccHHHHHhcCcc-
Confidence 999999999999999999999987532 12222222222 1222222110 00122346666554321
Q ss_pred CCCCCCCCCCC------CCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh---cCCCCCCEEEEecCcccchhhH
Q 008848 343 PRPNYYSPVYN------PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPV 413 (551)
Q Consensus 343 ~~~~~~~~~~~------~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~ 413 (551)
. ..+.... .+++++||+|||||||.||||+++|+++.+.+.+.... ++++++|++++.+|++|+.+++
T Consensus 176 -~--~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 252 (548)
T 2d1s_A 176 -P--GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252 (548)
T ss_dssp -T--TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred -c--cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHH
Confidence 0 0111111 23899999999999999999999999999888776655 6788999999999999999987
Q ss_pred H-HHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHH
Q 008848 414 I-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (551)
Q Consensus 414 ~-~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~ 492 (551)
. ++.++ .|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.
T Consensus 253 ~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~ 330 (548)
T 2d1s_A 253 TTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVA 330 (548)
T ss_dssp HHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHH
Confidence 6 55666 999999986 57899999999999999999999999999987655556789999999999999999999999
Q ss_pred HhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 493 SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+.+++++++|.||+||++..++. ........+++|+|++|++++|+| ++|+++|+|.
T Consensus 331 ~~~~~~~i~~~YG~TE~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~ 388 (548)
T 2d1s_A 331 RRFNLPGVRQGYGLTETTSAIII-TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNR 388 (548)
T ss_dssp HHTTCSCCEEEEECGGGSSEEEE-CCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTC
T ss_pred HHcCCCceeeccccccccceeee-cCcccCCCCCCCccCCCceEEEEeCCcCccCCCCC
Confidence 98877889999999999865444 222335668999999999999999 7899999985
No 23
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.9e-49 Score=420.81 Aligned_cols=328 Identities=16% Similarity=0.094 Sum_probs=261.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+. .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 11 ~a~~~p~~~a~~~~~~------~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 11 AATRAPDHCALAVPAR------GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84 (504)
T ss_dssp HHHHCTTSEEEEETTT------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHhCCCceEEEEcCC------CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 3478999999998621 13899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEe--ecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
||.++.+++.+++++++++++|+ +... ...+........ ++ .++++......
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~----------------~~~~~~~~~~~ 138 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAIFQSGSGAR-II----------------FLGDLVRDGEP 138 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHHHHHCCCCE-EE----------------EGGGTEETTEE
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhh---------hhhhhhccccce-eE----------------EecchhhcCcc
Confidence 99999999999999999999999 5432 111101111111 11 12233222100
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCC--CCCCEEEEecCcccchhh-HHHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGP-VILFSS 418 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (551)
.............++++|||+|||||||.||||+++|+++.+.+.+....+++ ++++++++.+|++|+.++ ..++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 218 (504)
T 1t5h_X 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218 (504)
T ss_dssp CCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred cccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence 00000111133467899999999999999999999999999888877777787 889999999999999997 568899
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC-c-cCCCCCCCccEEEeecCCCChhhHHHHHHhcc
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-C-LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~-~-~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~ 496 (551)
++.|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.. . ....++++||.+++|||++++++.+++.+.++
T Consensus 219 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~ 297 (504)
T 1t5h_X 219 LALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP 297 (504)
T ss_dssp HHTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC
T ss_pred HHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC
Confidence 99999999987 478899999999999999999999999998753 1 23456899999999999999999999998876
Q ss_pred CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCC---CccCCCC
Q 008848 497 YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG---VPYVRTF 550 (551)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g---~~vp~Gv 550 (551)
++++|.||+||+++. .. .. ....+++|+|+++++++|+|++| +++|+|.
T Consensus 298 -~~~~~~YG~TE~~~~-~~-~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~ 349 (504)
T 1t5h_X 298 -GEKVNIYGTTEAMNS-LY-MR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGE 349 (504)
T ss_dssp -SEEEEEEEETTTEEE-EE-EE--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTC
T ss_pred -cceeeeecccccccc-cc-cc--CCCCCccccCCCCCceeEEeccCCCCCcCCCCC
Confidence 789999999998432 22 11 34567899999999999999888 9999885
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.1e-49 Score=426.92 Aligned_cols=326 Identities=15% Similarity=0.084 Sum_probs=267.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+.+.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 13 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl 84 (521)
T 3l8c_A 13 FAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPV 84 (521)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEec
Confidence 4478999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|+++........ .. ...+.++......
T Consensus 85 ~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--------------~~----------------~~~~~~~~~~~~~-- 132 (521)
T 3l8c_A 85 DVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--------------IS----------------LVSLSEIESAKLA-- 132 (521)
T ss_dssp ETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--------------SE----------------EEEHHHHHHHHHH--
T ss_pred CccccHHHHHHHHHhCCCCEEEecCcccccccc--------------Cc----------------ccchhhhhhcccc--
Confidence 999999999999999999999998764211000 00 0111221111000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh--cCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
...........+++++||+|||||||.||||+++|+++.+...+.... +++.+++++++..|++|+.+.+.++.+++.
T Consensus 133 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 212 (521)
T 3l8c_A 133 EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLAL 212 (521)
T ss_dssp TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHT
T ss_pred cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhc
Confidence 000112234567999999999999999999999999999877766554 678899999999999999999888999999
Q ss_pred CCEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 422 GATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 422 G~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
|+++++.+.. .++..+++.|+++++|++.++|+++..+.........++++||.+++|||++++++.+++.+.+++++
T Consensus 213 G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 292 (521)
T 3l8c_A 213 GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAK 292 (521)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCE
T ss_pred CCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCce
Confidence 9999998642 37788999999999999999999999998776556677899999999999999999999999987789
Q ss_pred eeccccccccccccccCCcC----CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 500 IIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++|.||+||+++.++..... .....+++|+|++|++++|+|++|+++|+|.
T Consensus 293 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~ 347 (521)
T 3l8c_A 293 IINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGE 347 (521)
T ss_dssp EEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTC
T ss_pred EEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCC
Confidence 99999999998654432221 1234568999999999999999999999985
No 25
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3e-49 Score=426.66 Aligned_cols=318 Identities=18% Similarity=0.150 Sum_probs=256.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 48 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 48 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEe
Confidence 4578999999998766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcC-CCceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
+|.++.+++.+++++++++++|+++... ..+.... ...+..+.. . .+ .. ...
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~--~-----------~~---~~-~~~- 172 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEE--D-----------TI---KI-REG- 172 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCC--S-----------TT---TT-SCC-
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchh---------hhhhhccccCceeeecc--h-----------hh---cc-ccC-
Confidence 9999999999999999999999987532 1111100 011111110 0 00 00 000
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhC
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (551)
........++|+|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.|
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 248 (563)
T 1amu_A 173 ----TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 248 (563)
T ss_dssp ----SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred ----ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCC
Confidence 0111234578999999999999999999999999998888877788999999999999999999998899999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 423 ~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++|||++++++.+++.+. +++
T Consensus 249 ~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~ 319 (563)
T 1amu_A 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTY 319 (563)
T ss_dssp CEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEE
T ss_pred CEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeE
Confidence 999998632 4788899999999999999999999877532 36799999999999999999888654 689
Q ss_pred eccccccccccccccCCcC--CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+|.||+||++++++..... .....+++|+|++|++++|+|++|+++|+|.
T Consensus 320 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~ 371 (563)
T 1amu_A 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE 371 (563)
T ss_dssp EEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred EEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCC
Confidence 9999999998654433221 1235578999999999999999999999985
No 26
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=6.5e-50 Score=424.43 Aligned_cols=336 Identities=13% Similarity=0.097 Sum_probs=257.8
Q ss_pred cCCCCCCceEEEEecCC-CCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
+++++||++|+++.+.. +..+..+++||+||+++++++|++|+++ + +||+|+|+++|++++++++|||+++|++++|
T Consensus 33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 45789999999987621 1123446999999999999999999999 8 9999999999999999999999999999999
Q ss_pred cCC---CCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 263 IAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 263 l~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
+++ .++.+++.+++++++++++|++.... ............ ...++. ++.+..
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 169 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAV------DDVVQHVARRPGESPPSIIE----------------VDLLDL 169 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH------HHHHHTCC------CCEEEE----------------GGGSCT
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHH------HHHHHHHhccccccccceeE----------------eccccc
Confidence 999 78899999999999999999987532 111111111000 001111 111100
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCC------CCEEEEecCcccchh
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWVMG 411 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~~l~~~~~~~~~~ 411 (551)
.. ..........++++|||+|||||||+||||+++|+++++.+.+....+.+.+ +|++++.+|++|+++
T Consensus 170 ~~-----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 244 (480)
T 3t5a_A 170 DA-----PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244 (480)
T ss_dssp TC-----C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTH
T ss_pred cc-----ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccH
Confidence 00 0111223456789999999999999999999999999998888777777777 999999999999999
Q ss_pred h-HHHHHHHHhCCEEEEecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhc----CccCCCCCCCccEEEeecCCC
Q 008848 412 P-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGETS 483 (551)
Q Consensus 412 ~-~~~~~~l~~G~~lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~----~~~~~~~l~sLr~i~~gGe~l 483 (551)
+ +.++.+|+.|+++++.+.. .++..+++.|+++++| +..+|+++..++.. ......++++||.+++|||++
T Consensus 245 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l 323 (480)
T 3t5a_A 245 LVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERV 323 (480)
T ss_dssp HHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTC
T ss_pred HHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcC
Confidence 6 5688999999999997632 3788999999999999 88899988887653 233456789999999999999
Q ss_pred ChhhHHHHHHhcc-----CCceeccccccccccccccCCcCC------------------------CCCcCccCCCCCCc
Q 008848 484 NVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQ------------------------PQAFGAFSTATMTA 534 (551)
Q Consensus 484 ~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~~g~ 534 (551)
++++.+++.+.++ +++++|.||+||+++.++...... ....+++|+|++ +
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~ 402 (480)
T 3t5a_A 324 QAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P 402 (480)
T ss_dssp CHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S
T ss_pred CHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C
Confidence 9999999988874 357999999999987655433221 123468999999 9
Q ss_pred eEEEECCC-CCccCCCC
Q 008848 535 GLVILDEC-GVPYVRTF 550 (551)
Q Consensus 535 ~v~IlD~~-g~~vp~Gv 550 (551)
+++|+|++ |+++|+|.
T Consensus 403 ~~~ivd~~~g~~~~~g~ 419 (480)
T 3t5a_A 403 IVRIVDSDTCIECPDGT 419 (480)
T ss_dssp EEEEEETTTTEECCTTB
T ss_pred EEEEEcCCCCcCCCCCC
Confidence 99999976 89999986
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.1e-47 Score=415.08 Aligned_cols=333 Identities=19% Similarity=0.182 Sum_probs=258.1
Q ss_pred cCCCCCCceEEEEecC--CCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEE
Q 008848 185 HRRKEDNTVAIVWRED--RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~--~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~v 261 (551)
+++++||++|+++.+. +...+..+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+|+|++++
T Consensus 29 ~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 29 WAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYV 107 (562)
T ss_dssp HHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 4578999999998652 11112345899999999999999999999 9 799999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 262 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
|++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.......
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~~~~~~~ 165 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIENLSTQDT 165 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHHHHHSCC
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhhcccccc
Confidence 9999999999999999999999999865321100 0111111111 11122232222221
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh--------hcCCCCCCEEEEecCcccchhhH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA--------HIDLKVGDVYCWPTNLGWVMGPV 413 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~--------~~~~~~~d~~l~~~~~~~~~~~~ 413 (551)
........+++++||+|||||||.||||+++|+++.+...+... .+.+...+++++..+++|+.++.
T Consensus 166 -----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (562)
T 3ite_A 166 -----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG 240 (562)
T ss_dssp -----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH
T ss_pred -----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH
Confidence 11122345688999999999999999999999999877655433 24578889999999999999999
Q ss_pred HHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHH
Q 008848 414 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (551)
Q Consensus 414 ~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~ 493 (551)
.++.++..|+++++.+....+..+.+.|+++++|++.++|++++.+... ..++++||.+++|||++++++.+++..
T Consensus 241 ~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~ 316 (562)
T 3ite_A 241 EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSS 316 (562)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTT
T ss_pred HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhh
Confidence 8999999999999865322356788999999999999999999887533 345889999999999999999998876
Q ss_pred hccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 494 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
.+ +++++|.||+||+++.++..........+++|+|++|++++|+|+ +++++|+|.
T Consensus 317 ~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~ 373 (562)
T 3ite_A 317 SD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGM 373 (562)
T ss_dssp CS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTS
T ss_pred CC-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCC
Confidence 54 489999999999987655444334455678999999999999995 588999985
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.4e-47 Score=417.03 Aligned_cols=333 Identities=13% Similarity=0.105 Sum_probs=263.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 20 ~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 20 RALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp HHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEe
Confidence 4578999999998642 2235999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC---HHHHHHHHHhcCceEEEeecceeccCccccchhHHh-hcCC--CceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 264 ADSFA---AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL-GAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 264 ~~~~~---~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~--~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
+|.++ .+++.++++++++++++++...... ..... ...+ ....++. .+.+..
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 153 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK------FTADELNTNPKFLKIPAIA----------------LESIEL 153 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHH------HCC-----CCEETTEEEEE----------------GGGCCG
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHH------HHHhhhhhcccccccceee----------------chhccc
Confidence 99984 5799999999999999998753210 00000 0000 0011111 111110
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HH
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LF 416 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~ 416 (551)
... .........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|++++.. ++
T Consensus 154 ~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 228 (590)
T 3kxw_A 154 NRS-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCIL 228 (590)
T ss_dssp GGG-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTH
T ss_pred ccc-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHH
Confidence 000 011223456799999999999999999999999999999988888899999999999999999999876 88
Q ss_pred HHHHhCCEEEEecCC-C--ChhhHHHHHHHcCCcEEEecHHHHHHHHhc---CccCCCCCCCccEEEeecCCCChhhHHH
Q 008848 417 SSFLNGATLALYQGS-P--LERSFGKFVQDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLW 490 (551)
Q Consensus 417 ~~l~~G~~lvl~~~~-~--~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~---~~~~~~~l~sLr~i~~gGe~l~~~~~~~ 490 (551)
.+++.|+++++.+.. + ++..+++.|+++++|++.++|+++..+.+. ......++++||.+++|||++++++.++
T Consensus 229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 308 (590)
T 3kxw_A 229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308 (590)
T ss_dssp HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence 899999999997632 1 678899999999999999999999998764 2334567899999999999999999999
Q ss_pred HHHhcc-----CCceeccccccccccccccCCcC--------------------------CCCCcCccCCCCCCceEEEE
Q 008848 491 LSSKAW-----YNAIIESCGGTELSSAYIQGSLL--------------------------QPQAFGAFSTATMTAGLVIL 539 (551)
Q Consensus 491 ~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~g~~v~Il 539 (551)
+.+.++ +.+++|.||+||+++.++..... .....+++|+|+++ ++|+
T Consensus 309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~ 386 (590)
T 3kxw_A 309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKII 386 (590)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEE
T ss_pred HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEE
Confidence 888764 34799999999998765533211 11234689999998 8899
Q ss_pred CCC-CCccCCCC
Q 008848 540 DEC-GVPYVRTF 550 (551)
Q Consensus 540 D~~-g~~vp~Gv 550 (551)
|++ |+++|+|.
T Consensus 387 d~~~~~~~~~g~ 398 (590)
T 3kxw_A 387 DPDTLIPCDFDQ 398 (590)
T ss_dssp CTTTCCBCCTTB
T ss_pred cCCCCcCCCCCC
Confidence 977 99999985
No 29
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.8e-47 Score=407.73 Aligned_cols=333 Identities=15% Similarity=0.157 Sum_probs=255.5
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+++++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 4578999999998776 999999999999999999986 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCC-CCCcchHHhhccCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR-EQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 343 (551)
+.++.+++.+++++++++++|++...............+. . ................ ......+.......
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIE----F-AGRDITTNGLLDNTMGIQYDTSNETVVPKES--- 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-------------------------------------CC---
T ss_pred ccCCHHHHHHHHHhcCCCEEEEccccccccccccccccce----e-eeeecccccccccccccccccchhhccccCC---
Confidence 9999999999999999999999976432211100000000 0 0000000000000000 00000001100000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
..........+++++||+|||||||.||||+++|+++.+...+....++++++|++++.+|++|+.++..++.+++.|+
T Consensus 152 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~ 230 (501)
T 3ipl_A 152 -PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGF 230 (501)
T ss_dssp -HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred -cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCc
Confidence 0001123456799999999999999999999999999999888888899999999999999999999988899999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
++++.+ .+++..+++.|+++++|++.++|++++.|.+...... .+||.+++|||++++++.+++.+. +++++|.
T Consensus 231 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~ 304 (501)
T 3ipl_A 231 TVRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNS 304 (501)
T ss_dssp EEEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred eEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence 999987 5789999999999999999999999999987653332 289999999999999999888763 5899999
Q ss_pred ccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCC
Q 008848 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDEC 542 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~ 542 (551)
||+||+++.++..... .....+++|+|++|++++|+|++
T Consensus 305 YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 344 (501)
T 3ipl_A 305 FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN 344 (501)
T ss_dssp EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC
T ss_pred ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC
Confidence 9999997654433221 12356789999999999999975
No 30
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.4e-47 Score=408.59 Aligned_cols=312 Identities=17% Similarity=0.138 Sum_probs=248.2
Q ss_pred cCCCCCC-ceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+ ++|+++.++ ++||+||+++++++|++|. .|++|+|+++|++++++++|||+|+|++++|+
T Consensus 31 ~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl 98 (505)
T 3nyq_A 31 APTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98 (505)
T ss_dssp CCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEc
Confidence 3467776 999999776 9999999999999998775 48999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
||.++.+++.+++++++++++|++.... .. .... ....+.+.. ...
T Consensus 99 ~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~---~~~~--~~~~~~~~~---------------------~~~--- 144 (505)
T 3nyq_A 99 NPKSGDKELAHILSDSAPSLVLAPPDAE-----LP---PALG--ALERVDVDV---------------------RAR--- 144 (505)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC---GGGT--TSEEEECCT---------------------TCC---
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCccc-----cc---hhhc--ccccccccc---------------------ccc---
Confidence 9999999999999999999999986421 00 0000 000111100 000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G 422 (551)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|..+. +.++.+|+.|
T Consensus 145 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 145 --GAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp --CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred --cCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 0111233467899999999999999999999999999999888888999999999999999998886 4689999999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc---CCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 423 ~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~---~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
+++++.+ .+++..+++.+ ++++|++.++|+++..|.+.... ...+++++|.+++|||++++++.+++...++ ++
T Consensus 223 ~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~ 299 (505)
T 3nyq_A 223 GSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG-RR 299 (505)
T ss_dssp CEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS-CC
T ss_pred CEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC-Ce
Confidence 9999876 57888899999 89999999999999998863211 1234678999999999999999999887764 89
Q ss_pred eeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCC
Q 008848 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVR 548 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~ 548 (551)
++|.||+||+++.++. ........+++|+|++|++++|+|++|+++|+
T Consensus 300 ~~~~YG~TE~~~~~~~-~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~ 347 (505)
T 3nyq_A 300 VIERYGMTETLMNTSV-RADGEPRAGTVGVPLPGVELRLVEEDGTPIAA 347 (505)
T ss_dssp CEEEEEETTTEEEEEC-CTTSCCCTTCCCEECTTCEEEEC-----CCCC
T ss_pred eecccchhhccccccc-CCCCCCCCCCcccCCCCCEEEEECCCCCCccc
Confidence 9999999999865443 33334566899999999999999999999886
No 31
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.3e-46 Score=408.24 Aligned_cols=333 Identities=18% Similarity=0.144 Sum_probs=261.9
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+.+++.... +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 30 ~a~~~p~~~~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 104 (576)
T 3gqw_A 30 AALSSAGMNFYDRRC-----QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPL 104 (576)
T ss_dssp HTTSSCEEEEECTTS-----CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HhhCCCCeEEeCCCC-----CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeec
Confidence 457889888775321 1235899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC-------HHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhh
Q 008848 264 ADSFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336 (551)
Q Consensus 264 ~~~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~ 336 (551)
++.++ .+++.+++++++++++|+++... +.........+.. .++.. .+.+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~-~~~~~--------------~~~~-- 161 (576)
T 3gqw_A 105 AIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNAATHDNPEL-HVLSH--------------AWFK-- 161 (576)
T ss_dssp CCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHHHGGGCTTC-EEEEH--------------HHHH--
T ss_pred CCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHHhhccCCcc-eecch--------------hhhh--
Confidence 99999 89999999999999999987532 1122222111111 11100 0111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh-cCCCCCCEEEEecCcccchhhHH-
Q 008848 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVI- 414 (551)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~- 414 (551)
.... .........+++++||+|||||||.||||+++|+++++.+.+.... ++++++|++++++|++|+++++.
T Consensus 162 -~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 236 (576)
T 3gqw_A 162 -ALPE----ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGF 236 (576)
T ss_dssp -TSCC----CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHH
T ss_pred -cccc----cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHH
Confidence 1110 0112223457999999999999999999999999998887766544 78999999999999999999865
Q ss_pred HHHHHHhCCEEEEecC---CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc---cCCCCCCCccEEEeecCCCChhhH
Q 008848 415 LFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDD 488 (551)
Q Consensus 415 ~~~~l~~G~~lvl~~~---~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~---~~~~~l~sLr~i~~gGe~l~~~~~ 488 (551)
++.++..|+++++.+. .+++..+++.|+++++|++.++|+++..+.+... ....++++||.+++|||++++++.
T Consensus 237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~ 316 (576)
T 3gqw_A 237 LLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQL 316 (576)
T ss_dssp THHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHH
Confidence 6678899999988753 1477899999999999999999999988765422 245678999999999999999999
Q ss_pred HHHHHhcc-----CCceeccccccccccccccCCcCCC---------------------------CCcCccCCCCCCceE
Q 008848 489 LWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGL 536 (551)
Q Consensus 489 ~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~g~~v 536 (551)
+++.+.++ +.+++|.||+||+++.++....... ....++|+|++|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~ 396 (576)
T 3gqw_A 317 HQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGI 396 (576)
T ss_dssp HHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEE
T ss_pred HHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeE
Confidence 99988764 5789999999999876544321100 012389999999999
Q ss_pred EEECCCCCccCCCC
Q 008848 537 VILDECGVPYVRTF 550 (551)
Q Consensus 537 ~IlD~~g~~vp~Gv 550 (551)
+|+|++|+++|+|.
T Consensus 397 ~i~d~~g~~~~~g~ 410 (576)
T 3gqw_A 397 EIRNEAGMPVAERV 410 (576)
T ss_dssp EEECTTSCBCCTTB
T ss_pred EEECCCCCCCCCCC
Confidence 99999999999985
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.96 E-value=4.8e-30 Score=260.59 Aligned_cols=184 Identities=18% Similarity=0.112 Sum_probs=157.5
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCCh
Q 008848 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (551)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~ 434 (551)
.+++|||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|+++++.++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 3789999999999999999999999999999888888999999999999999999999889999999999999874433
Q ss_pred hhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccc
Q 008848 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 514 (551)
Q Consensus 435 ~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (551)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 4567889999999999999999987653 34568999999999999999999988754 479999999999987544
Q ss_pred cCCcCCCCCcCccCCCCCCceEEEECCCCCcc
Q 008848 515 QGSLLQPQAFGAFSTATMTAGLVILDECGVPY 546 (551)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~v 546 (551)
.. .......+.+|.|.||+++.+ +++|+.+
T Consensus 190 ~~-~~~~~~~g~~~~~~pgv~~~~-~~~Gel~ 219 (358)
T 4gs5_A 190 LK-ALNGPEASELYVFLPGIQYGV-DERGCLH 219 (358)
T ss_dssp EE-ECSSTTCCSCEEECTTCEEEE-CTTSEEE
T ss_pred cc-cccccccceeeccCCCeEEEe-cCcCceE
Confidence 33 333455678999999999987 4556654
No 33
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=1e-29 Score=259.78 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=156.4
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh---hhcCCCCCCEEEEecCc-ccchhhHHHHHHHHhCCEEEEe
Q 008848 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 428 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~l~~G~~lvl~ 428 (551)
.+++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|+ .|+.+....+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999988877433 45678899999999999 88888887778899999 5544
Q ss_pred cCCCChh-----------------------hHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCCh
Q 008848 429 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 485 (551)
Q Consensus 429 ~~~~~~~-----------------------~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~ 485 (551)
. .+++. .+++.|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 45666 77789999999999999999999987633223457899999999999999
Q ss_pred hhHHHHH-HhccCCceeccccccccccccccCCcCCCCCcCccCCC------CCCceEEEECC-CCCccCCCC
Q 008848 486 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~g~~v~IlD~-~g~~vp~Gv 550 (551)
++.+++. +.+++++++|.||+||+++.+.. .+ ..++|+| +++++++|+|+ +|++||+|.
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~-~~-----~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~ 312 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRS-LL-----ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGE 312 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEE-CC-----BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceec-cc-----cccCCCcccccCCCCCeEEEEECCCCCcCCCCCC
Confidence 9999999 88877899999999998765322 11 1158999 99999999998 899999996
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.95 E-value=3.3e-28 Score=254.79 Aligned_cols=194 Identities=14% Similarity=0.051 Sum_probs=155.1
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh---hhcCCCCCCEEEEecCcc-cchhhHHHHHHHHhCCEEEE
Q 008848 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLAL 427 (551)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~~~~~l~~G~~lvl 427 (551)
..+++++++|+|||||||.||||+++|+++.+...... ..++++++|++++..|++ |..+...++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34568999999999999999999999999876554332 357889999999999985 55566667889999999988
Q ss_pred ecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCC--CCCCccEEEeecCCCChhhHHHHHHhccCCceecccc
Q 008848 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (551)
Q Consensus 428 ~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (551)
.+ ..++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.++ ++++|.||
T Consensus 168 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG 245 (443)
T 2y4o_A 168 MS-GGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG-IDALDIYG 245 (443)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEeccC
Confidence 76 35889999999999999999999999999875322222 2579999999999999999999988774 89999999
Q ss_pred ccccccc-cccCCcCCCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
+||+++. +...... .....+.|.+++.++|+|+ +|+++|+|.
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~ 289 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGS 289 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTC
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCC
Confidence 9997432 2222211 1112455778999999994 699999985
No 35
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.95 E-value=7e-28 Score=251.83 Aligned_cols=194 Identities=19% Similarity=0.122 Sum_probs=158.1
Q ss_pred CCCC-CCeEEEEecCCCCCCCceEEecchhhHHHHHHh---hhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEE
Q 008848 352 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (551)
Q Consensus 352 ~~~~-~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv 426 (551)
..++ +++++|+|||||||.||||+++|+++.+..... ...++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 889999999999999999999999997765544 334688999999999998765554 56788899999999
Q ss_pred EecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCC--CCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 427 l~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+.+ ..++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.++ ++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEecC
Confidence 876 45889999999999999999999999999876433333 3789999999999999999999988874 8999999
Q ss_pred cccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
|+||+++.++.... + ....+|.|.++++++|+| ++|+++|+|.
T Consensus 239 G~TE~~~~~~~~~~--~-~~~g~~~~~~~~~v~i~d~~~g~~~~~g~ 282 (436)
T 3qov_A 239 GMTEMNGPGVAFEC--Q-EQNGMHFWEDCYLVEIIDPETGEPVPEGE 282 (436)
T ss_dssp EEGGGTEEEEEEEC--T-TCSSEEECTTTEEEEEECTTTCSBCSTTC
T ss_pred cchhhcCCeeEEec--C-CCCeeEEccCceEEEEEECCCCCCCCCCC
Confidence 99999543222211 1 112367788899999999 7899999986
No 36
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.95 E-value=7e-27 Score=244.33 Aligned_cols=194 Identities=16% Similarity=0.074 Sum_probs=155.5
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh---hhcCCCCCCEEEEecCc-ccchhhHHHHHHHHhCCEEEE
Q 008848 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 427 (551)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~l~~G~~lvl 427 (551)
..+++++++|+|||||||.||||+++|+++.+...... ..++++++|++++..|+ .|..+...++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34568999999999999999999999999876654332 35788999999999998 466666677889999999987
Q ss_pred ecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCC--CCCccEEEeecCCCChhhHHHHHHhccCCceecccc
Q 008848 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (551)
Q Consensus 428 ~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~--l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (551)
.+ ..++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.++ ++++|.||
T Consensus 166 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG 243 (437)
T 2y27_A 166 FG-GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVDIYG 243 (437)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEecCC
Confidence 66 358899999999999999999999999998753222222 579999999999999999999988774 89999999
Q ss_pred ccccccc-cccCCcCCCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
+||+++. +...... ....+|.|.+++.++|+|+ +|+++|+|.
T Consensus 244 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~ 287 (437)
T 2y27_A 244 LSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGE 287 (437)
T ss_dssp ETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTC
T ss_pred chhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCC
Confidence 9998432 2222211 1112566788999999995 599999985
No 37
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.62 E-value=2.4e-10 Score=121.51 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=103.5
Q ss_pred HHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC----Ccc--
Q 008848 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLY-- 85 (551)
Q Consensus 13 ~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~----~~~-- 85 (551)
.+|++++.+.+.+|.++|+++++...++ +||++||++ |++.+++.|..+++|+ ||++|++++..... ...
T Consensus 374 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 450 (520)
T 2jgp_A 374 TLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTLA 450 (520)
T ss_dssp EEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEEE
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCceeE
Confidence 4577889999999999999999998887 999999999 9999999999899999 99999998754321 111
Q ss_pred ccCCcch--hccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccce
Q 008848 86 WFPSLDQ--SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV 146 (551)
Q Consensus 86 ~~~~~~~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 146 (551)
....... ..++||.+.+...++++.+.+ |+. ++|++.+++++.++|.++++++..+
T Consensus 451 ~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~ 509 (520)
T 2jgp_A 451 PFMTDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQN 509 (520)
T ss_dssp ECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeecCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1111122 577888888777788888888 999 9999999999999999999998633
No 38
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.16 E-value=1.6e-08 Score=106.76 Aligned_cols=128 Identities=7% Similarity=-0.100 Sum_probs=90.6
Q ss_pred HHhhCCCchH--HHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhH---hcCCCCCchhhHHHHHHhhcccccCCCCCC---
Q 008848 13 LMKVGLKLEE--AEEFDKILKQVISCSKGL-DAREIWRELVARK---VLKPWHPHGLHQLVYYSVYNDWDASIKGPP--- 83 (551)
Q Consensus 13 ~~~~~~~~~~--~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~---~l~~~r~~~~~~l~~fq~~~~~~~~~~~~~--- 83 (551)
.+|+++..++ +.+|.++++++++...++ +| ++||++ |++ .++..|..+.+|+ ||++|++++......
T Consensus 299 ~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~~ 374 (493)
T 4hvm_A 299 RVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLTR 374 (493)
T ss_dssp EEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTTBTTGG--GCEEECC-----------
T ss_pred eeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCCCCCcc--eeEEEEEEecCCcccccc
Confidence 4567888888 899999999999998888 99 999999 999 8999999999999 999999986542211
Q ss_pred ---------ccccCCc----------------chhcccc---HHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHH
Q 008848 84 ---------LYWFPSL----------------DQSKLTN---LGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEA 134 (551)
Q Consensus 84 ---------~~~~~~~----------------~~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~ 134 (551)
....+.. ...+++| +.+.+...++++.+.+ |+. ++| +.+++++.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~ 448 (493)
T 4hvm_A 375 GERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLD 448 (493)
T ss_dssp ---------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHH
T ss_pred ccccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHH
Confidence 0000000 1123566 7777777788899998 999 899 999999999
Q ss_pred HHHHHHhhccceeecc
Q 008848 135 YWEIALKEISVVFREA 150 (551)
Q Consensus 135 ~~~~~l~~~~~~~~~~ 150 (551)
+|..+++++..+++.+
T Consensus 449 ~~~~~L~~~~~~p~~~ 464 (493)
T 4hvm_A 449 GLDAAMAQAVADPSAP 464 (493)
T ss_dssp HHHHHHHHHHHCTTSB
T ss_pred HHHHHHHHHHhCCCCc
Confidence 9999999987444433
No 39
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.07 E-value=1.2e-08 Score=105.78 Aligned_cols=132 Identities=7% Similarity=-0.127 Sum_probs=98.5
Q ss_pred HHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC--Cccc--c
Q 008848 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--PLYW--F 87 (551)
Q Consensus 13 ~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~--~~~~--~ 87 (551)
.++++++.+.+.+|.++++++++...++ +||++||++ |++.++..+ +.+|+ |+++|++++..... .... .
T Consensus 278 ~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~--~~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
T 1l5a_A 278 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNA--EQSYF--MSPFINILPFESPHFADCQTELK 352 (436)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCT--TCCBC--CCSEEEEECCCCCCCTTCEEEEE
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhcccc--cCCCc--cceEEEeeccCccccCCCeeEEE
Confidence 4678899999999999999999998888 999999999 999996544 46788 99999998654321 1100 0
Q ss_pred CCcchhccccHHHHHH-HhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccce---eeccccccc
Q 008848 88 PSLDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV---FREAPKCIL 155 (551)
Q Consensus 88 ~~~~~~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~---~~~~~~~~l 155 (551)
.......+ ||.+.+. ..++++.+.+ |+. ++|++.+++++.++|..+++++... ++.+...+|
T Consensus 353 ~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL 419 (436)
T 1l5a_A 353 VLASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLL 419 (436)
T ss_dssp EEEECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHH
T ss_pred ecCCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHh
Confidence 01112223 6666665 3567788888 998 9999999999999999999998755 555444443
No 40
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=96.64 E-value=1.4e-05 Score=83.27 Aligned_cols=122 Identities=12% Similarity=0.120 Sum_probs=83.6
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHhHhcCCC-----CCchhhHHHHHHhhcccccCCCC----C
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPW-----HPHGLHQLVYYSVYNDWDASIKG----P 82 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~pf~~~l~~~l~~~-----r~~~~~~l~~fq~~~~~~~~~~~----~ 82 (551)
+.+|++++++.+.+|.++++++++...+..||++||+. + +.+... +..+.. ++++|+++..... .
T Consensus 308 n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~----p~~~f~~~~~~~~~~~~~ 381 (466)
T 2xhg_A 308 SQYPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQ----PEVTFNYLGQFDADMRTE 381 (466)
T ss_dssp EEEEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCC----CSEEEEEEEECCTTCSSS
T ss_pred eeccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCC----CeEEEeecCcccccccCC
Confidence 34678888888899999999999987666999999996 5 555432 222333 3466766532110 0
Q ss_pred Cccc--cCC-------------cchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhcc
Q 008848 83 PLYW--FPS-------------LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEIS 144 (551)
Q Consensus 83 ~~~~--~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 144 (551)
.... .+. .....+++|.+.+...++++.+.+ |+. ++|++.+++++.++|.++|+++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~ 454 (466)
T 2xhg_A 382 LFTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAII 454 (466)
T ss_dssp SCEECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ceecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHH
Confidence 1100 000 011236677666655677888888 999 99999999999999999999875
No 41
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=91.66 E-value=0.0038 Score=63.54 Aligned_cols=104 Identities=11% Similarity=-0.095 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhcCCC-cHHHHH-----HHHHHhHhcCCCCCchhhHHHHHHhhc-ccccCCCC---CCcccc--CCc
Q 008848 23 AEEFDKILKQVISCSKGL-DAREIW-----RELVARKVLKPWHPHGLHQLVYYSVYN-DWDASIKG---PPLYWF--PSL 90 (551)
Q Consensus 23 ~~~f~~~l~~~~~~~~~~-~hq~~p-----f~~~l~~~l~~~r~~~~~~l~~fq~~~-~~~~~~~~---~~~~~~--~~~ 90 (551)
+.+|.++++++++...++ +||++| |++ +++.+++. +|+ +++| ++...... ...... ...
T Consensus 297 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~-----~pl---~~~~~n~~~~~~~~~~~~~~~~~~~~~ 367 (422)
T 1q9j_A 297 NTDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG-----LPP---LVFCTDATSFPTMRTPPGLEIEDIKGQ 367 (422)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS-----SCC---CEEEECCCCCCSCCCCTTCEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC-----CCc---eEEEecCCcCCCCCCCCCceeEeeecc
Confidence 457999999999998887 999996 889 99988643 232 3333 33221111 111100 001
Q ss_pred ch-hccccHHHH-HHHhCCccccccCCCCccchHHHHHHhhhChHHHHHHHHhhcc
Q 008848 91 DQ-SKLTNLGNA-LEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEIS 144 (551)
Q Consensus 91 ~~-~~~~~l~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 144 (551)
.. ..++++.+. +...++++.+.+|+. + .+++++.++|.++++++.
T Consensus 368 ~~~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~ 414 (422)
T 1q9j_A 368 FYCSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVP 414 (422)
T ss_dssp ECCBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTT
T ss_pred cccCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhh
Confidence 11 335566555 444566666655766 3 789999999999999976
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=89.22 E-value=3.6 Score=41.50 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=77.2
Q ss_pred CCCCceEEEEecCCCCCCC--ceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCeEEe
Q 008848 188 KEDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--~~e~vva~lA~~~~Ga~~vp 262 (551)
..++.+|.+....|. +|. ...+|.+.+...+..+++.+... ++++|++..+++- ....+..+++.+..|+..++
T Consensus 87 ~~~~~~~~i~~TSGT-TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGT-TGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCT-TSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCC-CCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 345677765544432 233 34689999998888888888778 9999999999985 34455667889999999987
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecce
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~ 290 (551)
++. ..++++...+++.++.+++..+.+
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 765 478899999999999999987654
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=88.61 E-value=4 Score=41.24 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=76.6
Q ss_pred CCCceEEEEecCCCCCCCc--eEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCeEEec
Q 008848 189 EDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--~~e~vva~lA~~~~Ga~~vpl 263 (551)
.++.+|.+....| .+|.. ..+|.+.+...+..+++.+... ++++|++..+++- ....+..+++.+..|+..+++
T Consensus 90 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4567775544433 23333 3689999998888888888778 9999999999986 345556678899999998887
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecce
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~ 290 (551)
++ ..++++...+++.++.+++..+.+
T Consensus 169 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 169 SG-GQTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEECHHH
Confidence 65 478889999999999999987654
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=88.55 E-value=3.3 Score=41.78 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=77.6
Q ss_pred CceEEEEecCCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCeEEecCCC
Q 008848 191 NTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADS 266 (551)
Q Consensus 191 d~~Al~~~~~~~~~~-~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--~~e~vva~lA~~~~Ga~~vpl~~~ 266 (551)
+.+|.+....|..+. ....+|.+.+...+..+++.+... +.++|++..+++- ....+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 778876655443222 234689999999998898888888 9999999999874 45566677899999999888765
Q ss_pred CCHHHHHHHHHhcCceEEEeecce
Q 008848 267 FAAREIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 267 ~~~~~l~~~l~~~~~~~vl~~~~~ 290 (551)
..++++...+++.++.+++..+.+
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~ 188 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSY 188 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHHH
Confidence 467888999999999999887753
No 45
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=78.91 E-value=6.6 Score=40.96 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=72.6
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCC
Q 008848 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (551)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~ 431 (551)
++.+|++.+..+.++ ..+|++.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF-MPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHH-HHHHHHHHcCCEEeecCCc
Confidence 355565544444333 4688887755443 3334568999999988887665533 4477889999999988766
Q ss_pred CChhhHHHHHHHcCCcEEEecHHHHHHHH
Q 008848 432 PLERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (551)
Q Consensus 432 ~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~ 460 (551)
...+++...++..++.++.........+.
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 137 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKIL 137 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHHH
Confidence 67788999999999999999887665544
No 46
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=77.66 E-value=14 Score=38.00 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHHH---hhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++. .+..+|++.+...+.. .....+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMI-ELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEecCC
Confidence 467778764 1356898887654443 334568999999988877765433 446788999999998886
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l 459 (551)
....+++...+++.++.++...+.....+
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 117 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDIV 117 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhhH
Confidence 66778899999999999999887765553
No 47
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=75.79 E-value=19 Score=37.36 Aligned_cols=105 Identities=11% Similarity=0.004 Sum_probs=73.5
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++....+..+. ..-.+|++.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 32 ~p~~~A~~~~~~~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSE-FPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV-MTIYALWRVAATPVPINP 109 (549)
T ss_dssp HTTSEEEEEESSCCCCS-SCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEeCCCccccc-ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHhCCEEEccCC
Confidence 46778877543211111 124578877655443 3334568999999988887765533 346788999999998886
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~ 460 (551)
....+++...+++.++.++...+.....+.
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 667788999999999999999887665543
No 48
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=74.64 E-value=21 Score=36.92 Aligned_cols=100 Identities=16% Similarity=0.002 Sum_probs=72.0
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++....+ .+..+|++.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL-EAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHhcCcEEEecCc
Confidence 3566777643211 345688887755443 3334578999999988877665433 346788999999998876
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l 459 (551)
....+++...+++.++.++...+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 66778899999999999999988765544
No 49
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=74.04 E-value=16 Score=35.66 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=68.1
Q ss_pred CCCceEEEEecCCCCCCCc--eEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCeEEec
Q 008848 189 EDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--~~e~vva~lA~~~~Ga~~vpl 263 (551)
.++.+|.+....|. +|.. ..+|.+.+...+..+++.+... +.++|++..++|- ..--+...++++..|+.+++.
T Consensus 89 ~~~~~a~i~~TSGT-TG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 89 PADSHPQVYESGGT-TGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp CTTCCCEEEEECC----CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CccccEEEEECCCC-CCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 45666766554432 3333 3579999988888777777777 9999999999986 333344455668999966654
Q ss_pred CCCCCHH-----------------------HHHHHHHhcCceEEEeecce
Q 008848 264 ADSFAAR-----------------------EIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 264 ~~~~~~~-----------------------~l~~~l~~~~~~~vl~~~~~ 290 (551)
+ +.+. ++...+++.++.++++.+.+
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 3 3444 66668899999999887653
No 50
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=72.12 E-value=26 Score=36.55 Aligned_cols=102 Identities=8% Similarity=-0.030 Sum_probs=72.7
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHHHh---hhhc-CCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEec
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~---~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~ 429 (551)
.|+.+|++.... .| ++..+|.+.+...+... .... +++++|++...++-+...- ..+++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWW-LVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCeEEEecC
Confidence 467778765421 12 24678888776544333 3334 8899999988877765433 34678899999999887
Q ss_pred CCCChhhHHHHHHHcCCcEEEecHHHHHHHH
Q 008848 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (551)
Q Consensus 430 ~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~ 460 (551)
.....+++...+++.++.++...+.....+.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 6667788999999999999998877665553
No 51
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=71.87 E-value=16 Score=37.85 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=70.3
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++. +.+| -.+|++.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFV-LAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCEEeccCC
Confidence 467788764 2222 4578887755443 3334578999999988877765433 446788999999998876
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l 459 (551)
....+++...++..++.++...+.....+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 66778899999999999998877554433
No 52
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=70.96 E-value=28 Score=35.54 Aligned_cols=98 Identities=9% Similarity=-0.022 Sum_probs=68.9
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++.. . ++..+|++.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCC
Confidence 4567777642 1 235688887765443 3334568999999988877765533 346788999999998886
Q ss_pred CCChhhHHHHHHHcCCcEEEe--cHHHHHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGT--VPSLVKAW 459 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~--~Ps~l~~l 459 (551)
....+++...+++.++..+.. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 667788999999999999888 55554444
No 53
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=69.40 E-value=36 Score=34.33 Aligned_cols=104 Identities=14% Similarity=0.042 Sum_probs=71.6
Q ss_pred CCCCeEEEEecC--CCCCCCceEEecchhhHHHHHHhh---hhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEe
Q 008848 354 PVDAVVNILFSS--GTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (551)
Q Consensus 354 ~~~~~a~iiyTS--GTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~ 428 (551)
.|+.+|++.... +.+| +...+|.+.+...+.... ...+. ++|++...++-+...- ..+++++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV-VAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH-HHHHHHHHhCcEEEee
Confidence 467888776542 2222 346789988765554333 33455 8999988776665433 3467889999999988
Q ss_pred cC---CCChhhHHHHHHHcCCcEEEecHHHHHHHHh
Q 008848 429 QG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 461 (551)
Q Consensus 429 ~~---~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~ 461 (551)
+. ....+++...+++.++.++...+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 64 3345788899999999999998877665543
No 54
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=68.83 E-value=26 Score=37.32 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=69.5
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.++.+|++.. +..+| .+..+|++.+...+. ......+++++|++..+++-+...- ..+++++..|+..+.++.
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v-va~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA-VAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHcCcEEEecCC
Confidence 3577787643 22222 345688887765443 3334568999999998888776543 446788999999998887
Q ss_pred CCChhhHHHHHHHcCCcEEEecH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVP 453 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~P 453 (551)
...++.+...+++.++.++.+..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77788899999999999888754
No 55
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=67.39 E-value=33 Score=35.90 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=69.8
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHH---HHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++.... .| ....+|.+.+.... .......++++||++...++-+.... ..+++++..|+..+.++.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~-~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW-YCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHhCCEEEEeCCc
Confidence 578888876532 12 35678888775544 33334578999999988887765533 346788999999988876
Q ss_pred CCChhhHHHHHHHcCCcEEEecH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVP 453 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~P 453 (551)
....+++...+++.++.++...+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 66778899999999999988754
No 56
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=67.04 E-value=31 Score=35.41 Aligned_cols=96 Identities=8% Similarity=-0.017 Sum_probs=69.4
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++.. | +...+|++.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFC-CLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCc
Confidence 4677777642 1 234688887755443 3334568999999988887765433 346788999999998886
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSLVK 457 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~l~ 457 (551)
....+++...+++.++.++...+....
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 127 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSAP 127 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchHH
Confidence 667788999999999999987665443
No 57
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=66.94 E-value=33 Score=36.63 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=70.6
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHH---HHhhh-hcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEec
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~ 429 (551)
.++.+|++... ..+| .+..+|.+.+...+ ..... ..+++++|++..+++-+...- ..+++++..|+..+.++
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v-~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI-ITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEeeC
Confidence 46778877542 2222 24568888775544 33334 678999999998888776543 34678899999999888
Q ss_pred CCCChhhHHHHHHHcCCcEEEecHH
Q 008848 430 GSPLERSFGKFVQDAGVTVLGTVPS 454 (551)
Q Consensus 430 ~~~~~~~~~~~i~~~~vt~l~~~Ps 454 (551)
....++.+...|++.++.++.+...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7777888999999999999988653
No 58
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=66.44 E-value=32 Score=35.86 Aligned_cols=96 Identities=8% Similarity=-0.049 Sum_probs=69.4
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHHH---hhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++. . +-.+|++.+...+.. .....+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF-IGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEEeCC
Confidence 467777763 1 235888877554433 334468999999988877665433 346788999999998876
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l 459 (551)
....+++...+++.++.++...+.....+
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 66778899999999999999887655443
No 59
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=64.80 E-value=31 Score=35.28 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=60.9
Q ss_pred EecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEe
Q 008848 375 PWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 451 (551)
Q Consensus 375 ~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~ 451 (551)
.+|++.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++......++...+++.++.++..
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEAL-VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 588887755443 3334568999999988877765433 347788999999998886667788999999999999988
Q ss_pred cHHH
Q 008848 452 VPSL 455 (551)
Q Consensus 452 ~Ps~ 455 (551)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7643
No 60
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=61.88 E-value=60 Score=33.73 Aligned_cols=101 Identities=9% Similarity=0.011 Sum_probs=71.6
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++....+ .+-.+|++.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLI-QAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH-HHHHHHHHhCcEEEEecC
Confidence 4677887755421 345789888765443 3334568999999988877765533 346788999999988864
Q ss_pred CC---ChhhHHHHHHHcCCcEEEecHHHHHHHH
Q 008848 431 SP---LERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (551)
Q Consensus 431 ~~---~~~~~~~~i~~~~vt~l~~~Ps~l~~l~ 460 (551)
.. ....+...++..++.++...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 33 2356778899999999999888776653
No 61
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=61.24 E-value=40 Score=35.05 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=67.3
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++. . +-.+|.+.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV-VALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEcCC
Confidence 467777763 1 23588887755443 3334568999999988877765533 346788999999998876
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSL 455 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~ 455 (551)
....+++...+++.++.++......
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 6677889999999999998876543
No 62
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=60.54 E-value=40 Score=34.83 Aligned_cols=90 Identities=13% Similarity=0.050 Sum_probs=66.0
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++- + +-.+|.+.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY-IVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHhCcEEecCCC
Confidence 467788763 1 34688887755443 3334568999999988777665433 346788999998887776
Q ss_pred CCChhhHHHHHHHcCCcEEEecH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVP 453 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~P 453 (551)
.....++...+++.++.++...+
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCHHHHHHHHHhcCeeEEEEcc
Confidence 66678899999999999988765
No 63
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=60.35 E-value=32 Score=35.40 Aligned_cols=96 Identities=6% Similarity=-0.078 Sum_probs=69.5
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.++.+|++.. +..+|++.+...+. ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP-VAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH-HHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCceEEecCc
Confidence 4677777531 13578887755443 3334568999999988877765433 346788999999998876
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l 459 (551)
...+.++...+++.++..+...+.....+
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 66778899999999999999887665443
No 64
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=58.31 E-value=33 Score=35.57 Aligned_cols=85 Identities=7% Similarity=-0.069 Sum_probs=64.5
Q ss_pred EEecchhhHHHHHHh---hhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEE
Q 008848 374 IPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 450 (551)
Q Consensus 374 V~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~ 450 (551)
..+|++.+...+... ....+++++|++...++-+...- ..+++++..|+..+.++.....+++...+++.++.++.
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFF-IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 458888776544333 33468999999988887765533 34678899999999988666778899999999999999
Q ss_pred ecHHHHHHH
Q 008848 451 TVPSLVKAW 459 (551)
Q Consensus 451 ~~Ps~l~~l 459 (551)
..+.....+
T Consensus 130 ~~~~~~~~~ 138 (548)
T 2d1s_A 130 SSKKGLDKV 138 (548)
T ss_dssp ECTTTHHHH
T ss_pred EcHHHHHHH
Confidence 887665544
No 65
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=57.76 E-value=1.2e+02 Score=31.14 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=71.3
Q ss_pred CCCCceEEEEecCCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHH--HH-HHHHHHHhCCeEEe
Q 008848 188 KEDNTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRA--VI-IYLAIILAGYVVVS 262 (551)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~-~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~--vv-a~lA~~~~Ga~~vp 262 (551)
..|+.+|++....|..+. ....+|.+.+...+..... .. ++++|++...+|-+..+ .. .+++.+..|+..+.
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 255 (539)
T 1mdb_A 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255 (539)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEE
Confidence 457888887665532211 2346899988766554433 34 88999999998876443 33 57899999999887
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecce
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~ 290 (551)
.+ ...++++...+++.++.++...+..
T Consensus 256 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~ 282 (539)
T 1mdb_A 256 SP-SPSPDDAFPLIEREKVTITALVPPL 282 (539)
T ss_dssp CS-SSSHHHHHHHHHHHTCSEEEECHHH
T ss_pred CC-CCCHHHHHHHHHHcCCeEEEccHHH
Confidence 64 5778899999999999999887653
No 66
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=54.48 E-value=4.7 Score=42.49 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=26.0
Q ss_pred CCCCCeEEEEecCCCC-CCCceEEecchhhHH
Q 008848 353 NPVDAVVNILFSSGTT-GEPKAIPWTQLSSIR 383 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTT-G~PKgV~~sh~~l~~ 383 (551)
..++.+.++.-||||| |+||-+.+|...+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 3556778999999999 889999999987644
No 67
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=53.42 E-value=51 Score=33.66 Aligned_cols=90 Identities=9% Similarity=-0.122 Sum_probs=64.1
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++. . +-.+|++.+...+. ......++.++|++...++-+...- ..+++++..|+..+.++.
T Consensus 17 ~p~~~a~~~--~-------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~-~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 17 QADFPVYDC--L-------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDML-ATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp STTSEEEEE--T-------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHH-HHHHHHHHTTCCEEEEET
T ss_pred CCCCcceec--C-------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEecCc
Confidence 356666653 1 23478887755443 3334568899999887776665433 346788999999998886
Q ss_pred CCChhhHHHHHHHcCCcEEEecH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVP 453 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~P 453 (551)
....+++..+++..++..+....
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESS
T ss_pred cccHHHHHHHHHhCCCCEEEecC
Confidence 66778899999999999887653
No 68
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=51.56 E-value=45 Score=33.93 Aligned_cols=90 Identities=6% Similarity=-0.061 Sum_probs=64.4
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL 433 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~ 433 (551)
.|+.+|++- + +-.+|++.+...+......+.-.++|++...++-+...- ..+++++..|+..+.++....
T Consensus 14 ~pd~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~~~ 83 (501)
T 3ipl_A 14 NGHHIAITD---G------QESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSI-ILIHACWLANIEIAMINTRLT 83 (501)
T ss_dssp HTTSEEEEC---S------SCEEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHHHH-HHHHHHHHTTCEEEECCTTSC
T ss_pred cCCceEEEe---C------CcEEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEecCccCC
Confidence 356677652 1 235888887766555444433238999988887765433 447788999999999886667
Q ss_pred hhhHHHHHHHcCCcEEEecH
Q 008848 434 ERSFGKFVQDAGVTVLGTVP 453 (551)
Q Consensus 434 ~~~~~~~i~~~~vt~l~~~P 453 (551)
.+++...+++.++.++....
T Consensus 84 ~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 84 PNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp HHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEcc
Confidence 78899999999999988754
No 69
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=51.42 E-value=55 Score=33.39 Aligned_cols=89 Identities=8% Similarity=-0.075 Sum_probs=63.3
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHHH---hhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++. . +-.+|.+.+...+.. .....++.++|++....+-+... +..+++++..|+..+.++.
T Consensus 14 ~p~~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~-~~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 14 TPDQTAFVW-R--------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEM-IINFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCceEEEe-C--------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCC
Confidence 457777753 1 135788877654433 33446788999988776665442 2447788999999998886
Q ss_pred CCChhhHHHHHHHcCCcEEEec
Q 008848 431 SPLERSFGKFVQDAGVTVLGTV 452 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~ 452 (551)
....+++...++..++.++...
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEES
T ss_pred CCcHHHHHHHHHhcCCCEEEec
Confidence 6677889999999999888764
No 70
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=51.15 E-value=54 Score=36.80 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=69.6
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++. +.+| ..+|++.+..... ......+++++|++...++-+...- ..+++++..|+..+.++.
T Consensus 74 ~pd~~Al~~---~~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~-v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLIN---GPTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFV-LSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEE---CCCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHH-HHHHHHHHcCCEEEeeCC
Confidence 568888764 2222 4578887755443 3334578999999988887765433 346788999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSLV 456 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~l 456 (551)
...++++...+++.++.++...+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 67788899999999999998876543
No 71
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=45.97 E-value=97 Score=31.48 Aligned_cols=99 Identities=8% Similarity=0.073 Sum_probs=70.2
Q ss_pred CCCCceEEEEecCCCCCCCc--eEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHH-HHHHHHHHHhCCeEEec
Q 008848 188 KEDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRA-VIIYLAIILAGYVVVSI 263 (551)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~-vva~lA~~~~Ga~~vpl 263 (551)
..++.+|++....|. +|.. ..+|.+.+...+..++. .. +.++|++..++|-+..+ +..+++++..|+..+.+
T Consensus 140 ~~~~~~a~i~~TSGT-TG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 140 VKEHETFYIIYTSGS-TGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CCTTSEEEEEEECCT-TSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCCeEEEEECCCC-CCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 356788877665432 3333 36898888766554433 34 88999999998876433 34578889999998876
Q ss_pred CCC--CCHHHHHHHHHhcCceEEEeecce
Q 008848 264 ADS--FAAREIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 264 ~~~--~~~~~l~~~l~~~~~~~vl~~~~~ 290 (551)
... ..++.+...+++.++.++...+.+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 244 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSF 244 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHH
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHH
Confidence 543 467888889999999998887653
No 72
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=43.11 E-value=1.4e+02 Score=30.66 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=64.9
Q ss_pred CCCCeEEEEecCCCCCCCc--eEEecchhhHHHHHH---hhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEe
Q 008848 354 PVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PK--gV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~ 428 (551)
.|+.+|++... |..+..+ +-.+|++.+...+.. .....++ ++|++...++-+...- ..+++++..|+..+.+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF-AIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH-HHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEec
Confidence 46777876543 3333332 356788877554433 3334567 7999988877765533 3467889999999988
Q ss_pred cCCCChhhHHHHHHHcCCcEEEecH
Q 008848 429 QGSPLERSFGKFVQDAGVTVLGTVP 453 (551)
Q Consensus 429 ~~~~~~~~~~~~i~~~~vt~l~~~P 453 (551)
+......++...+++.++.++....
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 7666778899999999999877653
No 73
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=42.82 E-value=95 Score=29.92 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=56.5
Q ss_pred HHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecc
Q 008848 219 VMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (551)
Q Consensus 219 a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~ 289 (551)
.+.+.....+- +++|.+..+....+-.-+..-+++.+.|.-++.+-|...+..-...++..++++++++..
T Consensus 71 ~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 71 YAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 34555556666 888887777888888888888999999998877777776667778899999999998753
No 74
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=42.57 E-value=8.1 Score=40.48 Aligned_cols=31 Identities=39% Similarity=0.432 Sum_probs=25.5
Q ss_pred CCCCCeEEEEecCCCC-CCCceEEecchhhHH
Q 008848 353 NPVDAVVNILFSSGTT-GEPKAIPWTQLSSIR 383 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTT-G~PKgV~~sh~~l~~ 383 (551)
..++.+.+..-||||| |++|-+.+|...+-.
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 3456678999999999 889999999886644
No 75
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=41.73 E-value=1e+02 Score=32.35 Aligned_cols=89 Identities=4% Similarity=-0.155 Sum_probs=63.5
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.|+.+|++- + +-.+|++.+..... ......++++++++..+.+-+...- ..+++.+..|+..+.++.
T Consensus 40 ~Pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-va~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD---R------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESI-TCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc---C------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEeeCc
Confidence 467777763 1 12588887755443 3334568999999988877665433 346788999999998876
Q ss_pred CCChhhHHHHHHHcCCcEEEec
Q 008848 431 SPLERSFGKFVQDAGVTVLGTV 452 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~ 452 (551)
....+.+..++++.++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 6566788889999999887744
No 76
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=41.12 E-value=1.5e+02 Score=26.37 Aligned_cols=81 Identities=10% Similarity=-0.074 Sum_probs=47.9
Q ss_pred ccchhhHHHHHHH-HhCCEEEEecCCCChhhHHHHHHHcCCcEEEe------cHHH--HHHHHhcCccCCCCC-CCccEE
Q 008848 407 GWVMGPVILFSSF-LNGATLALYQGSPLERSFGKFVQDAGVTVLGT------VPSL--VKAWRNTNCLEGLDW-TKIRSF 476 (551)
Q Consensus 407 ~~~~~~~~~~~~l-~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~------~Ps~--l~~l~~~~~~~~~~l-~sLr~i 476 (551)
.|+.|...+-..| .+|..++.......++++.+.++++++.++.+ ++++ +..+++...... + ..++ +
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~--~~~~v~-v 180 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEK--LRDSVK-C 180 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTT--CGGGSE-E
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcC--CCCCCE-E
Confidence 4787875443333 46666665544556789999999999997777 2322 222222111111 1 1344 6
Q ss_pred EeecCCCChhhHHH
Q 008848 477 ASTGETSNVDDDLW 490 (551)
Q Consensus 477 ~~gGe~l~~~~~~~ 490 (551)
++||.+++++.++.
T Consensus 181 ~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 181 MFGGAPVSDKWIEE 194 (215)
T ss_dssp EEESSSCCHHHHHH
T ss_pred EEECCCCCHHHHHH
Confidence 78999999765543
No 77
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=40.12 E-value=92 Score=29.79 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=42.4
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHH-HhCCeEEecCCCC-------------CHHHHHHHHHhcCceEEEeecc
Q 008848 230 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIADSF-------------AAREIATRLRVSKAKGIFTQDF 289 (551)
Q Consensus 230 v~~gd~V~i~~~~~~------e~vva~lA~~-~~Ga~~vpl~~~~-------------~~~~l~~~l~~~~~~~vl~~~~ 289 (551)
+++||+|+|++|-+. +.+-.-+..+ ..|.-++. .+.. .++++..++.+-+.+.|++...
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~-~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTF-GEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEE-CTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEE-CcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 789999999999752 3333333333 34655443 2221 2456677888899999999876
Q ss_pred eeccCcccc
Q 008848 290 ILRGGRKFP 298 (551)
Q Consensus 290 ~~~~~~~~~ 298 (551)
.....+.++
T Consensus 88 G~g~~rlL~ 96 (327)
T 4h1h_A 88 GFNSNQLLP 96 (327)
T ss_dssp CSCGGGGGG
T ss_pred chhHHHHhh
Confidence 443333333
No 78
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=40.06 E-value=9.5 Score=40.01 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=25.4
Q ss_pred CCCCCeEEEEecCCCC-CCCceEEecchhhHH
Q 008848 353 NPVDAVVNILFSSGTT-GEPKAIPWTQLSSIR 383 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTT-G~PKgV~~sh~~l~~ 383 (551)
..++.+.+..-||||| |++|-+.+|...+-.
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 3456678999999999 789999999987643
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=38.00 E-value=1.1e+02 Score=31.35 Aligned_cols=86 Identities=8% Similarity=-0.056 Sum_probs=62.0
Q ss_pred eEEecchhhHHHHHH---hhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCC-------hhhHHHHHH
Q 008848 373 AIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQ 442 (551)
Q Consensus 373 gV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~-------~~~~~~~i~ 442 (551)
+-.+|++.+...+.. .....+++++|++...++-+...- ..+++++..|+..+.++.... ..++...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFV-EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 457888887654433 334568999999988887765433 346788999999988864333 467888999
Q ss_pred HcCCcEEEecHHHHHHH
Q 008848 443 DAGVTVLGTVPSLVKAW 459 (551)
Q Consensus 443 ~~~vt~l~~~Ps~l~~l 459 (551)
..++..+.........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999998877655443
No 80
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=37.15 E-value=1e+02 Score=32.29 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=64.8
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCC
Q 008848 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (551)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~ 431 (551)
|+.+|.+- | +-.+|.+.+..... ......+++++|++....+-+...- ..+++.+..|+..+.++..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~v-va~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELY-ITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHH-HHHHHHHhcCeEEccCCcc
Confidence 67777762 1 24588887755443 3334568999999988877665533 3467889999998888766
Q ss_pred CChhhHHHHHHHcCCcEEEecH
Q 008848 432 PLERSFGKFVQDAGVTVLGTVP 453 (551)
Q Consensus 432 ~~~~~~~~~i~~~~vt~l~~~P 453 (551)
.....+...+++.++.++....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 6677888999999999888764
No 81
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=33.95 E-value=1.6e+02 Score=28.19 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecc
Q 008848 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (551)
Q Consensus 211 TY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~ 289 (551)
||+.-- ..+.+.....+- +++|+.|.+....+-.-...-+++.+.|.-++.+-|...+......++..++++++++..
T Consensus 49 SfK~R~-a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 49 SVKDRL-GFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp BTHHHH-HHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CcHHHH-HHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 555432 223344444444 688998755556677778888888888987776666655555567788999999999753
No 82
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=33.56 E-value=1.5e+02 Score=30.07 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=61.8
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCCh
Q 008848 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (551)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~ 434 (551)
+|.+|++. | +-.+|.+.+.......... +..++++...++-+...- ..+++++..|+..+.++.....
T Consensus 37 ~d~~Al~~---~------~~~~Ty~eL~~~~~~~A~~--L~~~~~V~i~~~~~~~~~-~~~la~~~~Ga~~vpl~~~~~~ 104 (505)
T 3nyq_A 37 ADRPALRF---G------ERSLTYAELAAAAGATAGR--IGGAGRVAVWATPAMETG-VAVVAALLAGVAAVPLNPKSGD 104 (505)
T ss_dssp GGSEEEEE---T------TEEEEHHHHHHHHHHHHTT--CC---CEEEECCSSHHHH-HHHHHHHHHTCCEEEECTTCCH
T ss_pred CCCeEEEE---C------CeeeeHHHHHHHHHHHHhh--ccCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEEcCCCCCH
Confidence 34677653 1 3468998887776655544 346788877776665433 3477889999999998876677
Q ss_pred hhHHHHHHHcCCcEEEecHH
Q 008848 435 RSFGKFVQDAGVTVLGTVPS 454 (551)
Q Consensus 435 ~~~~~~i~~~~vt~l~~~Ps 454 (551)
+++...+++.++.++...+.
T Consensus 105 ~~l~~il~~~~~~~vi~~~~ 124 (505)
T 3nyq_A 105 KELAHILSDSAPSLVLAPPD 124 (505)
T ss_dssp HHHHHHHHHHCCSEEEECTT
T ss_pred HHHHHHHHHCCCCEEEECCc
Confidence 88999999999999987653
No 83
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=33.25 E-value=1.3e+02 Score=28.83 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=44.1
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCCeEEecCCCC-------------CHHHHHHHHHhcCceEEEeecc
Q 008848 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADSF-------------AAREIATRLRVSKAKGIFTQDF 289 (551)
Q Consensus 230 v~~gd~V~i~~~~~~------e~vva~lA~~~-~Ga~~vpl~~~~-------------~~~~l~~~l~~~~~~~vl~~~~ 289 (551)
+++||+|+|++|-+. +-+-.-...++ .|.-++. .+.. ..+++..++.+-++++|++...
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~-~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTF-STHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEE-CTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEE-CCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 899999999998764 33444444454 5665553 3321 2456666778889999999876
Q ss_pred eeccCccccc
Q 008848 290 ILRGGRKFPL 299 (551)
Q Consensus 290 ~~~~~~~~~~ 299 (551)
.....+.++.
T Consensus 88 G~g~~rlL~~ 97 (331)
T 4e5s_A 88 GYNSNGLLKY 97 (331)
T ss_dssp CSCGGGGGGG
T ss_pred cccHHHHHhh
Confidence 5433344443
No 84
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=32.99 E-value=1.3e+02 Score=29.35 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=44.0
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCCeEEecCCC---------C---CHHHHHHHHHhcCceEEEeecce
Q 008848 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS---------F---AAREIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 230 v~~gd~V~i~~~~~~------e~vva~lA~~~-~Ga~~vpl~~~---------~---~~~~l~~~l~~~~~~~vl~~~~~ 290 (551)
+++||+|+|++|-+. +-+-.-+..++ .|.-++.-... . .+++|..++.+-++++|++....
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGG 119 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGG 119 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 899999999999874 33333344444 56665533211 1 24556667788899999998765
Q ss_pred eccCccccc
Q 008848 291 LRGGRKFPL 299 (551)
Q Consensus 291 ~~~~~~~~~ 299 (551)
....+.++.
T Consensus 120 yga~rlLp~ 128 (371)
T 3tla_A 120 DNSNSLLPF 128 (371)
T ss_dssp SCGGGGGGG
T ss_pred ccHHHHHhh
Confidence 444444444
No 85
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=32.59 E-value=1.4e+02 Score=28.58 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=44.0
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCCeEEecCCCC-------------CHHHHHHHHHhcCceEEEeecc
Q 008848 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADSF-------------AAREIATRLRVSKAKGIFTQDF 289 (551)
Q Consensus 230 v~~gd~V~i~~~~~~------e~vva~lA~~~-~Ga~~vpl~~~~-------------~~~~l~~~l~~~~~~~vl~~~~ 289 (551)
+++||+|+|++|-+. +-+-.-...++ .|.-++. .+.. ..+++..++.+-++++|++...
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~-~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILE-GSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEE-CTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEE-cccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 899999999999883 23333344444 5666554 2221 2456666788889999999876
Q ss_pred eeccCccccc
Q 008848 290 ILRGGRKFPL 299 (551)
Q Consensus 290 ~~~~~~~~~~ 299 (551)
.....+.++.
T Consensus 89 G~g~~rlL~~ 98 (336)
T 3sr3_A 89 GMNSNSLLPY 98 (336)
T ss_dssp CSCGGGGGGG
T ss_pred cccHHHHhhh
Confidence 5443344443
No 86
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=28.23 E-value=2.4e+02 Score=27.90 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=38.8
Q ss_pred cCCCCEEEEEcCCCHHHHHHHH-HHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeec
Q 008848 230 FSKGDAIAIDMPMTVRAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (551)
Q Consensus 230 v~~gd~V~i~~~~~~e~vva~l-A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~ 288 (551)
+++||.|.+.-+.-......+- .+.+.|+.++.++.. ..+.++..++. ++++|+.+.
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~ 175 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLET 175 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEES
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEEC
Confidence 7889998777666555544433 556778888777765 66777777654 677777654
No 87
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=26.64 E-value=1.6e+02 Score=28.41 Aligned_cols=61 Identities=16% Similarity=0.039 Sum_probs=41.8
Q ss_pred HHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCC-----CCHHHHHHHHHhcC--ceEEEee
Q 008848 224 NALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS-----FAAREIATRLRVSK--AKGIFTQ 287 (551)
Q Consensus 224 ~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~-----~~~~~l~~~l~~~~--~~~vl~~ 287 (551)
..|... +++||.|.+-.+....+. -++...|+.++.++.+ ...+.++..+...+ +++|+..
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 345666 899999998877665543 3567889876655432 36888888775444 7777744
No 88
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=25.53 E-value=2.5e+02 Score=26.70 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=41.4
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCC-------CCHHHHHHHHHhcCceEEEeec
Q 008848 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFTQD 288 (551)
Q Consensus 230 v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~-------~~~~~l~~~l~~~~~~~vl~~~ 288 (551)
+++||.|.+..+....+. .++...|+.++.++.. ...+.++..+++.++++|+...
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 689999988777766543 3556788877766543 6789999999877888876654
No 89
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=25.17 E-value=2.6e+02 Score=26.37 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=40.1
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC--C--CCHHHHHHHHHhcCceEEEeec
Q 008848 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD--S--FAAREIATRLRVSKAKGIFTQD 288 (551)
Q Consensus 230 v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~--~--~~~~~l~~~l~~~~~~~vl~~~ 288 (551)
.++||.|.+..+..+.+...+.++...|+.++.++. + ...+.++..++. ++++|+...
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 147 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMA 147 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEES
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEEC
Confidence 478999988877777666555555677887665543 3 357888877764 677777654
No 90
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=24.56 E-value=1.6e+02 Score=29.16 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhh---cCCCCEEEEEcCCC-HHHHHHHH-HHHHhCCeEEecCC------------------C-CCHH-
Q 008848 216 REQVMLVANALDTM---FSKGDAIAIDMPMT-VRAVIIYL-AIILAGYVVVSIAD------------------S-FAAR- 270 (551)
Q Consensus 216 ~~~a~~lA~~L~~~---v~~gd~V~i~~~~~-~e~vva~l-A~~~~Ga~~vpl~~------------------~-~~~~- 270 (551)
..+..++|..+.+. |++|+.|.|..+-. .+++-++. ++.++||-++.+.. . .|.-
T Consensus 5 ~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~~~d~~~~r~~~~~~~~~~~~~~p~~~ 84 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPAWL 84 (408)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEECCHHHHHHHHHHSCTTCTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHhcCChhHhhcCcHHH
Confidence 45667788877664 99999999998854 44554444 88999998886421 1 2221
Q ss_pred --HHHHHHHhcCceEEEeec
Q 008848 271 --EIATRLRVSKAKGIFTQD 288 (551)
Q Consensus 271 --~l~~~l~~~~~~~vl~~~ 288 (551)
.+...++...+.+-+...
T Consensus 85 ~~~~~~~~~~~~a~i~i~~~ 104 (408)
T 2ayi_A 85 YEGMARAFREGAARLAVSGS 104 (408)
T ss_dssp HHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHcCCEEEEEEcC
Confidence 244566777777777665
No 91
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=23.16 E-value=4.3e+02 Score=24.70 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=40.5
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC--CC----CCHHHHHHHHHh----cCceEEEeecc
Q 008848 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA--DS----FAAREIATRLRV----SKAKGIFTQDF 289 (551)
Q Consensus 230 v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~--~~----~~~~~l~~~l~~----~~~~~vl~~~~ 289 (551)
+++||.|.+..+.......+ +...|+.++.++ .+ ...+.++..+++ .++++++....
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~ 156 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYP 156 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECC
Confidence 67899999888877666554 667888776665 22 367888888875 36777776543
No 92
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=21.28 E-value=2.4e+02 Score=26.91 Aligned_cols=94 Identities=5% Similarity=0.030 Sum_probs=60.7
Q ss_pred CCCceEEEEecCCCCCCCc--eEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHH-HHHHHHHHHHhCCeEEecC
Q 008848 189 EDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR-AVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e-~vva~lA~~~~Ga~~vpl~ 264 (551)
..|.+|++....| .+|.. ..+|.+.|...+..++. .. ++++|++..++|-+.. -+..++..+..|+..+..+
T Consensus 35 ~~d~~a~Il~TSG-TTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 35 LGGAREFVLHTSG-STGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HHTCSEEEEEEEC-TTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCCEEEEECCc-ccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 3467777655443 23333 36899988776554443 34 8999999999987643 2445566677888877766
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecc
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDF 289 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~ 289 (551)
+... ....+++.++..+...+.
T Consensus 111 ~~~~---~~~~i~~~~~t~~~~~P~ 132 (358)
T 4gs5_A 111 PTAN---PLAGLDHADFDFVAMVPM 132 (358)
T ss_dssp CCSC---TTTTCSSCCCSEEEECHH
T ss_pred cccc---HHHHHHHhCCeEEEcChH
Confidence 5443 234567778888777654
No 93
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=21.16 E-value=5.5e+02 Score=24.54 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=48.6
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc
Q 008848 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA 306 (551)
Q Consensus 230 v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~ 306 (551)
+++||.|.+--+....+. -++...|+..++++. ...+.++..+++.++++|+++.-.-..+...+ ++++.+.
T Consensus 140 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~-l~~l~~l 211 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMSLW---EGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP-LAELVNI 211 (409)
T ss_dssp CCTTCEEEEETTSCHHHH---HHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC-HHHHHHH
T ss_pred cCCCCEEEECCCcCHHHH---HHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC-HHHHHHH
Confidence 789999998777665543 456677998888754 56888999998877788888754322233333 4444443
No 94
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=20.99 E-value=4.5e+02 Score=24.97 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=42.3
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhc---CceEEEeecc
Q 008848 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS---KAKGIFTQDF 289 (551)
Q Consensus 230 v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~---~~~~vl~~~~ 289 (551)
+++||.|.+..+....+.- ++...|+.+++++. ...+.++..++.. ++++|++...
T Consensus 124 ~~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~ 182 (398)
T 3a2b_A 124 MGRNDYILLDERDHASIID---GSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGI 182 (398)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESB
T ss_pred hCCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCC
Confidence 7899999999887776543 45667988887764 5678899888875 6788887654
No 95
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=20.80 E-value=2.6e+02 Score=26.42 Aligned_cols=69 Identities=9% Similarity=0.043 Sum_probs=42.1
Q ss_pred cCCCCEEEEEcCCCH---HHHHHHHHHHH-hCCeEEecCCC---------C---CHHHHHHHHHhcCceEEEeecceecc
Q 008848 230 FSKGDAIAIDMPMTV---RAVIIYLAIIL-AGYVVVSIADS---------F---AAREIATRLRVSKAKGIFTQDFILRG 293 (551)
Q Consensus 230 v~~gd~V~i~~~~~~---e~vva~lA~~~-~Ga~~vpl~~~---------~---~~~~l~~~l~~~~~~~vl~~~~~~~~ 293 (551)
+++||+|+|++|-+. +.+-.-...++ .|.-++.-... . ..+++...+.+-++++|++...-...
T Consensus 14 L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga 93 (311)
T 1zl0_A 14 QPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGC 93 (311)
T ss_dssp CCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCG
T ss_pred CCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCH
Confidence 889999999999763 33333333333 46555532111 1 23566667788899999998765433
Q ss_pred Ccccc
Q 008848 294 GRKFP 298 (551)
Q Consensus 294 ~~~~~ 298 (551)
.+.++
T Consensus 94 ~rlLp 98 (311)
T 1zl0_A 94 GQLLP 98 (311)
T ss_dssp GGGTT
T ss_pred HHHhh
Confidence 33333
No 96
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=20.31 E-value=1.3e+02 Score=25.83 Aligned_cols=42 Identities=7% Similarity=0.000 Sum_probs=30.5
Q ss_pred EecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 008848 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (551)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~l 251 (551)
-+|..|+.+++.++|+.+.+. -+ .+.|.|+..++--.+++-|
T Consensus 13 lis~~~I~~~i~rlA~eI~e~~~~-~~~vlvgIl~Gg~~fa~~L 55 (181)
T 3acd_A 13 QISAEAIKKRVEELGGEIARDYQG-KTPHLICVLNGAFIFMADL 55 (181)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTT-CCCEEEEEETTTHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHHHhCC-CCcEEEEEecCcHHHHHHH
Confidence 689999999999999999887 44 4455555555554444444
No 97
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=20.03 E-value=2.7e+02 Score=26.18 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=40.9
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC--C--CCHHHHHHHHHhcCceEEEeecc
Q 008848 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD--S--FAAREIATRLRVSKAKGIFTQDF 289 (551)
Q Consensus 230 v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~--~--~~~~~l~~~l~~~~~~~vl~~~~ 289 (551)
.++||.|.+..+..+-+..++..+.+.|+.++.++. + ...+.++..++. ++++++....
T Consensus 85 ~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~ 147 (382)
T 4hvk_A 85 ARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHA 147 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSB
T ss_pred cCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECC
Confidence 479999999888888777666555667876665543 3 357888877753 5667766543
Done!