BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008849
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 141/220 (64%), Gaps = 18/220 (8%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A+ +R+G+ V+V+DDEDRENEGD+I A +T E MA +RHG+GIVC+ +
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDR 227
+ ++L+LP+MV ++N T FTV++ +A G TTGVSA DR
Sbjct: 73 DRRKQLDLPMMV--ENNTSAYGTGFTVTI----------------EAAEGVTTGVSAADR 114
Query: 228 AKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCE 287
TV A +KP D NRPGH+FPL+ + GGVL R GHTEA++DL LAG +P VLCE
Sbjct: 115 ITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCE 174
Query: 288 IVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 327
+ +DDG+MAR P+ +FA N+ +++I DL+ YR+ +R
Sbjct: 175 LTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHER 214
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 202 bits (513), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 141/220 (64%), Gaps = 18/220 (8%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A+ +R+G+ V+V+DDEDRENEGD+I A +T E MA +RHG+GIVC+ +
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDR 227
+ ++L+LP+MV ++N T FTV++ +A G TTGVSA DR
Sbjct: 73 DRRKQLDLPMMV--ENNTSAYGTGFTVTI----------------EAAEGVTTGVSAADR 114
Query: 228 AKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCE 287
TV A +KP D NRPGH+FPL+ + GGVL R GHTEA++DL LAG +P VLCE
Sbjct: 115 ITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCE 174
Query: 288 IVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 327
+ +DDG+MAR P+ +FA N+ +++I DL+ YR+ +R
Sbjct: 175 LTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHER 214
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
pdb|3H07|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
Length = 220
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 139/215 (64%), Gaps = 18/215 (8%)
Query: 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDL 170
+ AI+ +R G+ V+V+DDE RENEGD++ AA +T E MA +RHG+GIVC+ + E
Sbjct: 19 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERR 78
Query: 171 ERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKT 230
++L+LP+MV H N + TAFTV++ +A G TTGVSA DR T
Sbjct: 79 QQLDLPMMVTH--NSSQFQTAFTVTI----------------EAAEGVTTGVSAADRLTT 120
Query: 231 VLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVD 290
+ ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA LAG +P VLCE+ +
Sbjct: 121 IRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTN 180
Query: 291 DDGSMARLPKLRQFAQTENLKIISIADLIRYRRKR 325
DDGSMA P++ FA+ ++ +++I DL Y + R
Sbjct: 181 DDGSMAHAPEVIAFAKLHDMPVVTIDDLAAYLQSR 215
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LQU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LRJ|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|C Chain C, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|D Chain D, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LS6|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
pdb|3LS6|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
Length = 217
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 141/220 (64%), Gaps = 18/220 (8%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A++ +R+G+ V+V+DDEDRENEGD+I A +T E MA +RHG+GIVC+ +
Sbjct: 13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDR 227
+ ++L+LP+MV ++N T FTV++ +A G TTGVSA DR
Sbjct: 73 DRRKQLDLPMMV--ENNTSAYGTGFTVTI----------------EAAEGVTTGVSAADR 114
Query: 228 AKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCE 287
TV A +KP D NRPGH+FPL+ + GGVL R GHTEA++DL LAG +P VLCE
Sbjct: 115 VTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCE 174
Query: 288 IVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 327
+ +DDG+MAR P+ FA N+ +++I DL+ YR+ +R
Sbjct: 175 LTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAHER 214
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis With
Sulfate And Zinc At Ph 4.00
Length = 212
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 143/219 (65%), Gaps = 20/219 (9%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
S+ A+ DI GK VIV+DDEDRENEGDLI AA TPE +AF+VR+ +G +CV + G
Sbjct: 12 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAI 71
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAK 229
+RL L M + N++K TA+TV+V DA+ G TG+SA+DRA
Sbjct: 72 CDRLGLLPM--YAVNQDKHGTAYTVTV----------------DARNGIGTGISASDRAT 113
Query: 230 TVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIV 289
T+ LA S +DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AGL+P +CEIV
Sbjct: 114 TMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIV 173
Query: 290 D--DDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 326
D+GSMA +LR FA L +I+IADLI +RRK +
Sbjct: 174 SQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 212
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional
DhbpsGTP Cyclohydrolase Ii From Mycobacterium
Tuberculosis At Ph 4.0
pdb|3MIO|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
pdb|3MIO|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
Length = 206
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 143/219 (65%), Gaps = 20/219 (9%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
S+ A+ DI GK VIV+DDEDRENEGDLI AA TPE +AF+VR+ +G +CV + G
Sbjct: 6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAI 65
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAK 229
+RL L M + N++K TA+TV+V DA+ G TG+SA+DRA
Sbjct: 66 CDRLGLLPM--YAVNQDKHGTAYTVTV----------------DARNGIGTGISASDRAT 107
Query: 230 TVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIV 289
T+ LA S +DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AGL+P +CEIV
Sbjct: 108 TMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIV 167
Query: 290 D--DDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 326
D+GSMA +LR FA L +I+IADLI +RRK +
Sbjct: 168 SQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 206
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKS|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|1TKU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|2RIS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans- Alternate Interpretation
pdb|2RIU|A Chain A, Alternative Models For Two Crystal Structures Of Candida
Albicans 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase-
Alternate Interpreation
Length = 204
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 141/221 (63%), Gaps = 19/221 (8%)
Query: 105 TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVS 164
T F I EA+E + G+ +IV+DDEDRENEGDLIMAA L+T E MAF+VR+ +G VCV
Sbjct: 2 TNIFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVP 61
Query: 165 MKGEDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSA 224
+ E +LELP M+ ++ + TA+T+ TC D GTTTG+SA
Sbjct: 62 LSEERANQLELPPMLANRSDRHG--TAYTI---------TC-------DFAEGTTTGISA 103
Query: 225 NDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAV 284
+DRA T +LA +SKP+DF +PGHI PL+ G + KR GHTEA+V L+ LAGL+P V
Sbjct: 104 HDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGV 163
Query: 285 LCEIV-DDDGSMARLPKLRQFAQTENLKIISIADLIRYRRK 324
+CE+V D+DG M RL QF + +KII+I L+ Y K
Sbjct: 164 ICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK 204
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
pdb|2BZ0|B Chain B, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
Length = 196
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/188 (48%), Positives = 119/188 (63%), Gaps = 1/188 (0%)
Query: 333 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 392
A A +PT WG F + L G +H+A+V G+I +L RVHSECLTGD S RCD
Sbjct: 7 AEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD 66
Query: 393 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 452
CG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G+DTVEAN +LG
Sbjct: 67 CGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA 125
Query: 453 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 512
D R++ + A + + LGV ++L+TNNP K L G+ I R+PL+ N+ YL+T
Sbjct: 126 DERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDT 185
Query: 513 KRAKMGHV 520
K KMGH+
Sbjct: 186 KAEKMGHL 193
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii
Length = 196
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 117/188 (62%), Gaps = 1/188 (0%)
Query: 333 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 392
A A +PT WG F + L G +H+A+V G+I +L RVHSECLTGD S RCD
Sbjct: 7 AEAKLPTPWGDFLXVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD 66
Query: 393 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 452
CG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G+DTVEAN +LG
Sbjct: 67 CGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA 125
Query: 453 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 512
D R++ + A + LGV ++L+TNNP K L G+ I R+PL+ N+ YL+T
Sbjct: 126 DERDFTLCADXFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDT 185
Query: 513 KRAKMGHV 520
K K GH+
Sbjct: 186 KAEKXGHL 193
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 132/238 (55%), Gaps = 28/238 (11%)
Query: 104 PTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCV 163
P F +I + I+ + G+ V+V+DD RENE DLI+AA VT E MAF+VRH +G++C
Sbjct: 8 PKSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICA 67
Query: 164 SMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVS 223
+ E L+LP MV H N + TA+TVSV E S TTTG+S
Sbjct: 68 PLTPERTTALDLPQMVTH--NADPRGTAYTVSVDAEHPS---------------TTTGIS 110
Query: 224 ANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 283
A+DRA LA D++P F RPGH+FPL+ GGV R GHTEA V+L LAG PVA
Sbjct: 111 AHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVA 170
Query: 284 VLCEIVDDDGS-----------MARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVE 330
V+ EIVDD M R + FA+ LK+ +I D+I + K + +E
Sbjct: 171 VISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLE 228
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 122/223 (54%), Gaps = 17/223 (7%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
++ +AIE +++G++++V D ++RE E D+++A+ +TPE + + + G++C ++ +
Sbjct: 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 62
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVVL-----EMGSETCFLILLKEDAKYGTTTGVSA 224
+L +P MV D E F V L ++ F I + T TG++
Sbjct: 63 CNKLGIPFMV---DILEFASQKFKVLRELYPNDIPYDEKSSFSITINHRK---TFTGITD 116
Query: 225 NDRAKTVLALA--CRDSKPEDFNR----PGHIFPLKYREGGVLKRAGHTEASVDLAVLAG 278
NDRA T+ LA ++ + DF + PGH+ L+ EG V R GHTE +V LA LA
Sbjct: 117 NDRAFTIKKLAELVKEGRFNDFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTVALAELAN 176
Query: 279 LEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY 321
L P+ +CE++ DDG+ + +++A+ NL +S ++I Y
Sbjct: 177 LVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 37/233 (15%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
++ +AIE +++G++++V D ++RE E D+++A+ +TPE + + + G++C ++ +
Sbjct: 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 62
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLI--LLKEDAKYG---------- 217
+L +P MV+ +LE S+ ++ L D Y
Sbjct: 63 CNKLGIPFMVD----------------ILEFASQKFKVLRELYPNDIPYDEKSSFSITIN 106
Query: 218 ---TTTGVSANDRAKTVLALA--CRDSKPEDFNR----PGHIFPLKYREGGVLKRAGHTE 268
T TG++ NDRA T+ LA ++ + DF + PG + L+ EG V R GHTE
Sbjct: 107 HRKTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTE 166
Query: 269 ASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY 321
+V LA LA L P+ +CE++ DDG+ + +++A+ NL +S ++I Y
Sbjct: 167 MTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
>pdb|3J1Q|A Chain A, Structure Of Aav-Dj, A Retargeted Gene Therapy Vector:
Cryo-Electron Microscopy At 4.5a Resolution
Length = 737
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 158 TGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFL----ILLKED 213
TG + G D P M +HKD+EEK V + + GSE + +++ ++
Sbjct: 505 TGATKYHLNGRDSLVNPGPAMASHKDDEEKFFPQSGVLIFGKQGSEKTNVDIEKVMITDE 564
Query: 214 AKYGTTTGVSAND--RAKTVLALACRDSKPEDFNR----PGHIFPLK--YREGGVLKRAG 265
+ TT V+ T L R + D N PG ++ + Y +G + +
Sbjct: 565 EEIRTTNPVATEQYGSVSTNLQRGNRQAATADVNTQGVLPGMVWQDRDVYLQGPIWAKIP 624
Query: 266 HTEASVDLAVLAG 278
HT+ + L G
Sbjct: 625 HTDGHFHPSPLMG 637
>pdb|1LP3|A Chain A, The Atomic Structure Of Adeno-Associated Virus (Aav-2), A
Vector For Human Gene Therapy
pdb|3J1S|A Chain A, Structure Of Adeno-Associated Virus-2 In Complex With
Neutralizing Monoclonal Antibody A20
Length = 519
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 158 TGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFL----ILLKED 213
TG + G D P M +HKD+EEK V + + GSE + +++ ++
Sbjct: 287 TGATKYHLNGRDSLVNPGPAMASHKDDEEKFFPQSGVLIFGKQGSEKTNVDIEKVMITDE 346
Query: 214 AKYGTTTGVSAND--RAKTVLALACRDSKPEDFNR----PGHIFPLK--YREGGVLKRAG 265
+ TT V+ T L R + D N PG ++ + Y +G + +
Sbjct: 347 EEIRTTNPVATEQYGSVSTNLQRGNRQAATADVNTQGVLPGMVWQDRDVYLQGPIWAKIP 406
Query: 266 HTEASVDLAVLAG 278
HT+ + L G
Sbjct: 407 HTDGHFHPSPLMG 419
>pdb|2Q8W|A Chain A, Crystal Structure Of Pap-S1aci, A Pokeweed Antiviral
Protein From Seeds Of Phytolacca Acinosa
Length = 261
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 91 DFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAM 150
DFFPND +L+ + + IS AI D + G L ++ ++ + +++ + P+
Sbjct: 193 DFFPNDKVLELE---ENWGKISTAIHDAKNGALPKPLELKNADGTKWIVLRVDEIKPDVG 249
Query: 151 AFIVRHGT 158
+GT
Sbjct: 250 LLKYVNGT 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,669,003
Number of Sequences: 62578
Number of extensions: 674503
Number of successful extensions: 1659
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1630
Number of HSP's gapped (non-prelim): 15
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)