Query 008849
Match_columns 551
No_of_seqs 235 out of 1500
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 17:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02831 Bifunctional GTP cycl 100.0 4E-139 9E-144 1110.8 44.6 444 74-533 1-445 (450)
2 PRK09319 bifunctional 3,4-dihy 100.0 3E-133 6E-138 1079.5 39.9 398 108-524 5-406 (555)
3 PRK09311 bifunctional 3,4-dihy 100.0 1E-131 3E-136 1043.3 39.2 398 108-523 4-401 (402)
4 PRK09318 bifunctional 3,4-dihy 100.0 3E-130 7E-135 1026.4 36.8 383 112-525 2-384 (387)
5 PRK12485 bifunctional 3,4-dihy 100.0 4E-120 8E-125 946.2 37.5 366 107-499 2-368 (369)
6 PRK14019 bifunctional 3,4-dihy 100.0 4E-117 8E-122 924.3 37.7 364 107-499 2-365 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 5E-114 1E-118 889.5 34.5 337 107-498 2-339 (339)
8 PRK08815 GTP cyclohydrolase; P 100.0 8E-108 2E-112 855.3 35.1 350 108-524 17-368 (375)
9 COG0108 RibB 3,4-dihydroxy-2-b 100.0 1.1E-75 2.5E-80 563.6 21.8 201 107-326 2-202 (203)
10 PRK00910 ribB 3,4-dihydroxy-2- 100.0 3.7E-73 8E-78 555.3 22.2 201 108-326 14-214 (218)
11 PRK01792 ribB 3,4-dihydroxy-2- 100.0 2.8E-72 6E-77 547.8 22.7 200 108-325 13-212 (214)
12 PRK00014 ribB 3,4-dihydroxy-2- 100.0 8.6E-71 1.9E-75 541.1 22.5 201 109-327 19-219 (230)
13 TIGR00506 ribB 3,4-dihydroxy-2 100.0 1.2E-70 2.5E-75 532.4 21.5 197 108-322 2-199 (199)
14 KOG1284 Bifunctional GTP cyclo 100.0 1.6E-70 3.4E-75 558.2 15.7 333 67-415 21-357 (357)
15 PF00926 DHBP_synthase: 3,4-di 100.0 2.9E-70 6.3E-75 528.2 16.7 194 111-322 1-194 (194)
16 COG0807 RibA GTP cyclohydrolas 100.0 1.5E-68 3.3E-73 514.6 17.3 192 328-521 2-193 (193)
17 PRK03353 ribB 3,4-dihydroxy-2- 100.0 2.3E-66 4.9E-71 508.9 22.7 201 108-326 13-213 (217)
18 PRK05773 3,4-dihydroxy-2-butan 100.0 1.7E-65 3.7E-70 502.2 21.0 193 110-322 2-217 (219)
19 PRK00393 ribA GTP cyclohydrola 100.0 1.1E-59 2.4E-64 455.3 17.5 196 328-524 2-197 (197)
20 TIGR00505 ribA GTP cyclohydrol 100.0 1.1E-58 2.4E-63 446.4 17.2 191 330-521 1-191 (191)
21 PF00925 GTP_cyclohydro2: GTP 100.0 5.7E-58 1.2E-62 433.6 11.1 169 329-498 1-169 (169)
22 cd00641 GTP_cyclohydro2 GTP cy 100.0 1.5E-55 3.3E-60 424.8 16.9 193 328-521 1-193 (193)
23 PRK07198 hypothetical protein; 100.0 2.5E-41 5.4E-46 352.0 12.9 169 344-515 210-394 (418)
24 KOG1284 Bifunctional GTP cyclo 99.6 2.7E-17 5.8E-22 169.3 1.7 154 369-524 156-324 (357)
25 TIGR02361 dak_ATP dihydroxyace 79.9 4.6 0.0001 46.2 7.2 88 347-470 33-125 (574)
26 PRK14481 dihydroxyacetone kina 79.4 7.3 0.00016 41.8 8.1 88 347-471 35-127 (331)
27 PRK11468 dihydroxyacetone kina 78.0 7.6 0.00016 42.1 7.7 88 347-470 34-126 (356)
28 TIGR02363 dhaK1 dihydroxyaceto 73.9 9.3 0.0002 41.0 7.0 88 347-470 35-127 (329)
29 PF02733 Dak1: Dak1 domain; I 72.3 3.2 6.8E-05 44.4 3.1 86 348-470 20-110 (325)
30 PRK14479 dihydroxyacetone kina 71.9 9.6 0.00021 43.6 7.0 87 347-470 34-125 (568)
31 TIGR02362 dhaK1b probable dihy 71.3 14 0.00031 39.6 7.7 87 347-470 32-123 (326)
32 PRK14483 DhaKLM operon coactiv 66.8 16 0.00035 39.2 7.0 87 347-470 34-125 (329)
33 PTZ00375 dihydroxyacetone kina 62.2 19 0.00042 41.4 6.9 87 347-470 37-128 (584)
34 KOG3009 Predicted carbohydrate 60.8 27 0.00058 39.5 7.3 159 112-316 30-204 (614)
35 KOG2426 Dihydroxyacetone kinas 49.0 86 0.0019 35.7 8.9 96 339-475 29-133 (582)
36 PF06794 UPF0270: Uncharacteri 48.0 32 0.0007 29.2 4.3 30 110-142 38-67 (70)
37 PF13344 Hydrolase_6: Haloacid 44.9 6.3 0.00014 34.6 -0.4 51 460-513 22-77 (101)
38 PF13420 Acetyltransf_4: Acety 39.8 23 0.00051 31.6 2.5 36 462-497 103-141 (155)
39 PRK04966 hypothetical protein; 38.4 34 0.00074 29.2 3.1 21 110-130 38-58 (72)
40 COG1560 HtrB Lauroyl/myristoyl 35.9 92 0.002 33.2 6.5 52 109-160 182-236 (308)
41 PRK00304 hypothetical protein; 34.8 65 0.0014 27.8 4.2 32 110-144 37-68 (75)
42 PF13263 PHP_C: PHP-associated 31.4 26 0.00057 27.6 1.3 20 299-318 5-24 (56)
43 COG1926 Predicted phosphoribos 31.2 99 0.0021 31.7 5.5 48 120-167 123-184 (220)
44 PF00332 Glyco_hydro_17: Glyco 31.1 35 0.00077 36.1 2.5 39 459-497 17-55 (310)
45 COG3473 Maleate cis-trans isom 30.8 48 0.001 34.0 3.2 58 459-516 108-176 (238)
46 PRK14041 oxaloacetate decarbox 29.9 2.2E+02 0.0047 32.2 8.5 235 212-470 11-254 (467)
47 TIGR02990 ectoine_eutA ectoine 28.4 1.3E+02 0.0029 30.6 6.0 92 396-500 58-156 (239)
48 PF04472 DUF552: Protein of un 25.9 70 0.0015 26.5 2.9 24 107-131 8-31 (73)
49 PF03437 BtpA: BtpA family; I 24.2 1.5E+02 0.0032 30.9 5.5 24 133-157 49-72 (254)
50 PRK08558 adenine phosphoribosy 23.7 1.3E+02 0.0028 30.7 4.9 49 261-315 185-234 (238)
51 PRK08296 hypothetical protein; 23.4 88 0.0019 36.4 4.1 76 120-196 511-592 (603)
52 PF00107 ADH_zinc_N: Zinc-bind 23.0 43 0.00093 29.2 1.2 33 459-492 5-37 (130)
53 PF07905 PucR: Purine cataboli 22.7 1.4E+02 0.0031 26.9 4.5 77 240-322 35-112 (123)
54 cd03109 DTBS Dethiobiotin synt 22.4 1.7E+02 0.0036 26.7 5.0 50 264-314 82-131 (134)
55 COG0223 Fmt Methionyl-tRNA for 21.9 1.6E+02 0.0034 31.5 5.3 135 269-406 13-174 (307)
56 PLN02880 tyrosine decarboxylas 21.1 1.7E+02 0.0037 32.8 5.6 50 263-312 222-272 (490)
57 PRK12330 oxaloacetate decarbox 20.7 5E+02 0.011 29.7 9.2 236 213-470 14-258 (499)
58 COG3089 Uncharacterized protei 20.6 94 0.002 26.4 2.6 21 110-130 38-58 (72)
59 PRK14719 bifunctional RNAse/5- 20.0 1.7E+02 0.0037 31.8 5.2 51 460-512 58-116 (360)
60 COG0461 PyrE Orotate phosphori 20.0 2.3E+02 0.005 28.6 5.7 48 270-324 131-181 (201)
No 1
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=4e-139 Score=1110.81 Aligned_cols=444 Identities=82% Similarity=1.270 Sum_probs=432.5
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHH
Q 008849 74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFI 153 (551)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm 153 (551)
|+.+|||+++|++|++++||..+.+.+.+.+.+.|++|++||++||+|+||||+||++||||||||+|||++|||.||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm 80 (450)
T PLN02831 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL 80 (450)
T ss_pred CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence 57899999999999999999999999999996679999999999999999999999999999999999999999999999
Q ss_pred HHhCCccEEeecChhhHhhcCCCcccccCCCccccccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHH
Q 008849 154 VRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLA 233 (551)
Q Consensus 154 ~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~ 233 (551)
++|++|+||++|++++|++|+||+|+....|++..+++||||| |++.|++|||||.|||+|||+
T Consensus 81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsV----------------d~~~g~~TGISa~dRa~Tir~ 144 (450)
T PLN02831 81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTV----------------DAKHGTTTGVSASDRAKTILA 144 (450)
T ss_pred HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEE----------------ecCCCcccccchHHHHHHHHH
Confidence 9999999999999999999999999986557777889999999 998899999999999999999
Q ss_pred HhcCCCCCCCccCCCCcccceeccCCcccccChhHHHHHHHHHcCCCceEEEEEEeCC-CCCcCChhHHHHHHHhcCCce
Q 008849 234 LACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKI 312 (551)
Q Consensus 234 LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAvDLarlAGl~PaaVicEi~~~-dG~mar~~~l~~fA~~h~L~i 312 (551)
||+|.++|.||++|||||||++++|||++|+|||||||||||||||.||+|||||+++ ||+||+.+++.+||++|+||+
T Consensus 145 lad~~~~~~df~~PGHvfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~ 224 (450)
T PLN02831 145 LASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKI 224 (450)
T ss_pred HhCcCCChhhcCCCCcccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcE
Confidence 9999999999999999999999999999999999999999999999999999999995 999999999999999999999
Q ss_pred ecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCC
Q 008849 313 ISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 392 (551)
Q Consensus 313 vsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCD 392 (551)
++|+|||+||+++|++|+++++.++||.||+|++++|++..++.||+||++|++.+++||||||||+|+|||+|||.+||
T Consensus 225 v~i~dli~yr~~~e~lV~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~Gd~~~~~~vLVRVHSec~tgDvfgs~rCd 304 (450)
T PLN02831 225 ISIADLIRYRRKREKLVERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARCD 304 (450)
T ss_pred EEHHHHHHHHhhccccccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEeCCcCCCCCceEEEeccCCHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCee
Q 008849 393 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTM 472 (551)
Q Consensus 393 Cg~QL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kv 472 (551)
|+|||+.||++|+++|+|||||||+||||||||.+|+++|.+|++|+||++||.+||++.|.|+||+|||||++|||++|
T Consensus 305 Cg~qL~~Al~~I~~~G~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~dLGI~~i 384 (450)
T PLN02831 305 CGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRTM 384 (450)
T ss_pred CcchHHHHHHHHHHcCCEEEEEEcCCCcccchHHHHHHHHhcccccCcchhhhhhccCcccceehHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCcccccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCCccCCCCCCCCCCcc
Q 008849 473 KLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSI 533 (551)
Q Consensus 473 rLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~~~~~~~~~~~~ 533 (551)
|||||||+|+.+|++|||+|++++|++++++++|++||+||++||||+|..+..+++++.-
T Consensus 385 rLLTNNp~K~~~L~~~GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~~~~~~~~~ 445 (450)
T PLN02831 385 RLMTNNPAKYTGLKGYGLAVVGRVPLLTPITKENKRYLETKRTKMGHVYGSDLGGHVSGLE 445 (450)
T ss_pred EECCCCHHHHHHHhhCCCEEEEEecccCCCChhhHHHHHHHHHHhCCcCCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999988886643
No 2
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=2.8e-133 Score=1079.49 Aligned_cols=398 Identities=57% Similarity=0.957 Sum_probs=390.2
Q ss_pred cccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCccc
Q 008849 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (551)
Q Consensus 108 ~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~ 187 (551)
|++|++||++||+|+||||+||++||||||||+|||++||+.||||++|++|+||++|++++|++|+||+|+.. |++.
T Consensus 5 ~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~~ 82 (555)
T PRK09319 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTDS 82 (555)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999987 8888
Q ss_pred cccceEEEEEeccCcchhhhhhhccccc--CCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccC
Q 008849 188 LCTAFTVSVVLEMGSETCFLILLKEDAK--YGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAG 265 (551)
Q Consensus 188 ~~taFtvsV~~~~~~~~~~~~~~~~Da~--~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~G 265 (551)
.+++||||| |++ .|++|||||.|||+|||+||+|.++|.||++|||||||++++|||++|+|
T Consensus 83 ~~taFtVsV----------------Da~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~G 146 (555)
T PRK09319 83 NQTAFTVSI----------------DAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAG 146 (555)
T ss_pred CCceEEEEE----------------eccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCC
Confidence 889999999 986 59999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEE
Q 008849 266 HTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFK 345 (551)
Q Consensus 266 hTEAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~ 345 (551)
||||||||||||||.||+|||||+++||+|||++++.+||++|+||+|+|+|||+||+++|++|++++++++||.||+|+
T Consensus 147 HTEAAVDLarLAGL~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~ 226 (555)
T PRK09319 147 HTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQ 226 (555)
T ss_pred hHHHHHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceEEEEEeccCCC--CCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCc
Q 008849 346 AHCYRSLLDGIEHIAMVKGEIGD--GQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGI 423 (551)
Q Consensus 346 ~~~Yr~~~dg~EHlALv~Gdi~~--~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGRGi 423 (551)
+++|++..++.||+||++|++.. ++||||||||+|+|||+|||.+|||++||++||++|+++|+||||||| ||||||
T Consensus 227 ~~~yr~~~~g~eHvALvkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGi 305 (555)
T PRK09319 227 AYGYRNELDGSEHVALVKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGI 305 (555)
T ss_pred EEEEEeCCCCeEEEEEEcCCcccccCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeC-CCCcch
Confidence 99999999999999999999963 479999999999999999999999999999999999999999999998 999999
Q ss_pred chhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcccccccccCCeEEEEEeecCCCCC
Q 008849 424 GLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPIT 503 (551)
Q Consensus 424 GL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~ 503 (551)
||.+|+++|.||++|+||++||..+||+.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|
T Consensus 306 GL~nKl~aY~LQd~G~DTveAn~~lG~~~D~RdYgigAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~ 385 (555)
T PRK09319 306 GLINKLKAYSLQDGGLDTVEANERLGFPADLRNYGVGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEAN 385 (555)
T ss_pred hHHHHHHHHhhhhcCCChhhhhhhcCCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCccCCC
Q 008849 504 MENKRYLETKRAKMGHVYGLN 524 (551)
Q Consensus 504 ~~n~~YL~tK~~k~gH~l~~~ 524 (551)
++|++||+||++||||+|...
T Consensus 386 ~~n~~YL~tK~~k~gH~l~~~ 406 (555)
T PRK09319 386 DYNAEYLATKAEKLGHLLLQT 406 (555)
T ss_pred cchhHHHHHHHHhhCCccCCC
Confidence 999999999999999999864
No 3
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.4e-131 Score=1043.34 Aligned_cols=398 Identities=64% Similarity=1.047 Sum_probs=392.0
Q ss_pred cccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCccc
Q 008849 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (551)
Q Consensus 108 ~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~ 187 (551)
|+.|++||++||+|+||||+||++||||||||+|||++|+|.||||++|++|+||++|++++|++|+||+|+.. |++.
T Consensus 4 ~~~v~~ai~~lr~G~~Vvl~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~--~~~~ 81 (402)
T PRK09311 4 FDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH--NQDS 81 (402)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCccccc--CCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999987 7888
Q ss_pred cccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChh
Q 008849 188 LCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHT 267 (551)
Q Consensus 188 ~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhT 267 (551)
.+|+||||| |++.|++|||||.|||+|||+||+|.++|.||++|||||||++++|||++|+|||
T Consensus 82 ~~t~ftvsv----------------d~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~Ght 145 (402)
T PRK09311 82 HGTAFTVSV----------------DAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHT 145 (402)
T ss_pred CCCceEEEE----------------EccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChH
Confidence 899999999 9988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEE
Q 008849 268 EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAH 347 (551)
Q Consensus 268 EAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~~~ 347 (551)
||||||||||||.|++|||||+++||+||+.+++++||++|+||+|+++|||+||+++|.+|+++.+.++||.||+|+++
T Consensus 146 EaavdL~~lAgl~Paavi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~ 225 (402)
T PRK09311 146 EAAVDLARLAGLQPAGVICEIVNEDGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAI 225 (402)
T ss_pred HHHHHHHHHcCCCceEEEEEEecCCCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchhh
Q 008849 348 CYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGH 427 (551)
Q Consensus 348 ~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~ 427 (551)
+|++..++.||+||++|++.+++||||||||+|+|||+|||.+|||+|||+.||++|+++|+||||||++|||||+||.+
T Consensus 226 ~y~~~~~~~eH~ALv~Gd~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qegrg~gl~~ 305 (402)
T PRK09311 226 GYTSILDGKEHVALVKGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRGIGLLH 305 (402)
T ss_pred EEEECCCCeEEEEEEeCCCCCCCceeEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCCcccchHHH
Confidence 99999999999999999998889999999999999999999999999999999999999999999999989999999999
Q ss_pred hhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcccccccccCCeEEEEEeecCCCCChhhH
Q 008849 428 KLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENK 507 (551)
Q Consensus 428 Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~ 507 (551)
|+++|.+|++|+||++||..+|++.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+.++++++|+
T Consensus 306 Kl~ay~lq~~g~dt~~an~~lg~~~D~Rdyg~gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~~~~~~~~~n~ 385 (402)
T PRK09311 306 KLRAYQLQDEGYDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPLPVRANEENE 385 (402)
T ss_pred HHHHHhhhhcCCChhhhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEeccCCCCChhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccCC
Q 008849 508 RYLETKRAKMGHVYGL 523 (551)
Q Consensus 508 ~YL~tK~~k~gH~l~~ 523 (551)
+||+||++||||+|.+
T Consensus 386 ~yl~tK~~~~gH~l~~ 401 (402)
T PRK09311 386 RYLRTKRDRMGHDLDL 401 (402)
T ss_pred HHHHHHHHhccCCCCC
Confidence 9999999999999875
No 4
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=3.2e-130 Score=1026.40 Aligned_cols=383 Identities=41% Similarity=0.678 Sum_probs=370.1
Q ss_pred HHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCccccccc
Q 008849 112 SEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTA 191 (551)
Q Consensus 112 ~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~~~ta 191 (551)
++||++||+|+||||+|+ +||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+.. . .+++
T Consensus 2 ~~ai~al~~G~~viv~D~-~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~~---~--~~~a 75 (387)
T PRK09318 2 EELREAFLEGKPVILIDR-NRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPSN---G--GETN 75 (387)
T ss_pred HHHHHHHHCCCeEEEEeC-CCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccCC---C--CCCC
Confidence 689999999999999997 899999999999999999999999999999999999999999999999843 2 3589
Q ss_pred eEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChhHHHH
Q 008849 192 FTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASV 271 (551)
Q Consensus 192 FtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAv 271 (551)
||||| |++ .+|||||.|||+|||+||+ .++|.||+||||||||.+. ||++|+|||||||
T Consensus 76 ftvsv----------------d~~--~~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaav 134 (387)
T PRK09318 76 FFIPV----------------DYG--TGTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASL 134 (387)
T ss_pred EEEEE----------------cCC--CCCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHH
Confidence 99999 984 4599999999999999999 6789999999999999775 7999999999999
Q ss_pred HHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEe
Q 008849 272 DLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRS 351 (551)
Q Consensus 272 DLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~~~~Yr~ 351 (551)
|||||||+.|++||||||++||+|||.+++++||++|+||+++|+|||+||+++|++|+++++.++||.||+|++++|++
T Consensus 135 dL~~lAGl~p~~vicei~~~dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~ 214 (387)
T PRK09318 135 ELSELLGFKRYAVIVEILDEKGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFEN 214 (387)
T ss_pred HHHHHcCCCceEEEEEEecCCCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchhhhhhh
Q 008849 352 LLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRA 431 (551)
Q Consensus 352 ~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~a 431 (551)
..++.||+|||+|++. +||||||||+|+|||+|||.+|||++||+.||++|+++| ||||||| ||||||||.+|+++
T Consensus 215 ~~~g~eH~ALv~g~~~--~~vLVRVHSec~tgDvfgs~~CdCg~qL~~Al~~Ia~eG-GvlvYLr-qegrgigl~~Kl~a 290 (387)
T PRK09318 215 HLDGKEHVAIVKEPLG--EVPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKA 290 (387)
T ss_pred CCCCcEEEEEEeCCCC--CCceEEEeecccHHHHhcCCCCCCcchHHHHHHHHHHcC-CEEEEEC-CCCcchhHHHHHHH
Confidence 9999999999999985 489999999999999999999999999999999999999 9999998 99999999999999
Q ss_pred hhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcccccccccCCeEEEEEeecCCCCChhhHHHHH
Q 008849 432 YNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLE 511 (551)
Q Consensus 432 y~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~ 511 (551)
|.||++|+||++||..+||+.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+
T Consensus 291 y~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl~~~~~~~n~~Yl~ 370 (387)
T PRK09318 291 YELQDKGLDTVEANRALGFKEDERDYAAAFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPLYGEVTKYNRFYLK 370 (387)
T ss_pred HhhhhcCCCchhhhhhcCCCccceeeeHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccCCCC
Q 008849 512 TKRAKMGHVYGLNS 525 (551)
Q Consensus 512 tK~~k~gH~l~~~~ 525 (551)
||++||||+|....
T Consensus 371 tK~~k~gH~l~~~~ 384 (387)
T PRK09318 371 TKVEKLGHKLELRE 384 (387)
T ss_pred HHHHhhCCCcCcCC
Confidence 99999999998753
No 5
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=3.5e-120 Score=946.25 Aligned_cols=366 Identities=43% Similarity=0.691 Sum_probs=349.9
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCcc
Q 008849 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (551)
Q Consensus 107 ~~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~ 186 (551)
.|++|++||++||+|+||||+||++||||||||+|||++|||.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~viv~Dd~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~--~~~ 79 (369)
T PRK12485 2 AFNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS--NGS 79 (369)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCccccc--CCC
Confidence 377899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred ccccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccCh
Q 008849 187 KLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGH 266 (551)
Q Consensus 187 ~~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~Gh 266 (551)
.++|+||||| |++.|++|||||.|||+|||.||+|.++|.||++|||||||++++|||++|+||
T Consensus 80 ~~~~~ftvsv----------------da~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~Gh 143 (369)
T PRK12485 80 VFSTAFTVSI----------------EAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGH 143 (369)
T ss_pred CCCCCEEEEE----------------ecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCCh
Confidence 8899999999 998899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEE
Q 008849 267 TEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKA 346 (551)
Q Consensus 267 TEAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~~ 346 (551)
||||||||||||+.|++||||||++||+||+.+++.+||++|+||+|+|+|||+||+++|.+|+++++++|||.||+|++
T Consensus 144 tEaavdL~~lAgl~p~avi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~ 223 (369)
T PRK12485 144 TEAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRL 223 (369)
T ss_pred HHHHHHHHHHcCCCceEEEEEEecCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCC-CChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcch
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARC-DCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGL 425 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rC-DCg~QL~~AL~~I~~~G~GVLVYLr~qEGRGiGL 425 (551)
++|++..++.||+||++|++.+++||||||||+|+|||+|||.+| ||+|||+.||++|+++|+|||||||+| +++|||
T Consensus 224 ~~y~~~~~g~eHvALv~G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~-~~~~gl 302 (369)
T PRK12485 224 VTYEDRIEGGVHMAMVMGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANH-ESSQAL 302 (369)
T ss_pred EEEEeCCCCeEEEEEEeCCCCCCCCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCC-CchhhH
Confidence 999999999999999999998889999999999999999999865 999999999999999999999999955 466999
Q ss_pred hhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcccccccccCCeEEEEEeecC
Q 008849 426 GHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLL 499 (551)
Q Consensus 426 ~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g~GIeV~ervpl~ 499 (551)
.+|+++|..|+.+++..+ ..|+|+||+||||||+|||+||||| |||.|+.+|++|||+|+++||+.
T Consensus 303 ~~kl~a~~~~~~~~~~~d-------~r~~r~ygigAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~vp~~ 368 (369)
T PRK12485 303 LERIPQLTQPPRQYQRSQ-------SRIYSEVGTGAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPFP 368 (369)
T ss_pred HHHHHHHHhHhhCCCccc-------chhhhhhhHHHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEecCC
Confidence 999999987776665311 2357799999999999999999999 78999999999999999999974
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=3.6e-117 Score=924.34 Aligned_cols=364 Identities=50% Similarity=0.799 Sum_probs=355.0
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCcc
Q 008849 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (551)
Q Consensus 107 ~~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~ 186 (551)
.|++|++||++||+|+||||+||++||||||||+|||++|+|.|+||++|++|+||++|++++|++|+||+|+.. |.+
T Consensus 2 ~~~~i~~Ai~~lr~G~~Viv~D~~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~--~~~ 79 (367)
T PRK14019 2 TLASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR--NGT 79 (367)
T ss_pred CCccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCccccc--CCC
Confidence 377899999999999999999999999999999999999999999999999999999999999999999999986 778
Q ss_pred ccccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccCh
Q 008849 187 KLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGH 266 (551)
Q Consensus 187 ~~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~Gh 266 (551)
.++++||||| |++.|++|||||.|||+||+.|++++++|.||++|||||||++++||++.|+||
T Consensus 80 ~~~~~ftvsv----------------d~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~Gh 143 (367)
T PRK14019 80 QYGTNFTVSI----------------EAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGH 143 (367)
T ss_pred cCCCceEEEE----------------EcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCc
Confidence 8899999999 998899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEE
Q 008849 267 TEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKA 346 (551)
Q Consensus 267 TEAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~~ 346 (551)
|||||||||||||.|++|+|||+++||+||+.+++++||++|+||+|+++||++||+++|++|++++++++||+||+|++
T Consensus 144 tEaavdLarlAgl~Paavi~ei~~~~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~ 223 (367)
T PRK14019 144 TEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRL 223 (367)
T ss_pred hHHHHHHHHHcCCCceEEEEEEecCCCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchh
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLG 426 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~ 426 (551)
++|++..++.||+||++|++.+++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||| ||||||||.
T Consensus 224 ~~y~~~~~~~eH~Alv~Gd~~~~~~vlVRvHS~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~-qegrgigl~ 302 (367)
T PRK14019 224 VAYRDKPSGSTHLALVKGTICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLN-CGDDGEHLL 302 (367)
T ss_pred EEEEeCCCCcEEEEEEeCCcCCCCceeEEEeeccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEc-cCCchhhHH
Confidence 9999999999999999999988889999999999999999999999999999999999999999999999 999999999
Q ss_pred hhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcccccccccCCeEEEEEeecC
Q 008849 427 HKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLL 499 (551)
Q Consensus 427 ~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g~GIeV~ervpl~ 499 (551)
||+++ |++||..+|++.|+|+||+||||||+|||++||||| ||.|+++|++|||+|++|+|+.
T Consensus 303 ~k~~~---------~~~an~~lg~~~d~R~y~igaqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~~~ 365 (367)
T PRK14019 303 DRFRA---------EEAAAALKRRPVDYRTYGIGAQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVPMP 365 (367)
T ss_pred Hhhhh---------hhhhhhhcCCCcccceehHHHHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEecCC
Confidence 99996 456899999999999999999999999999999999 7999999999999999999974
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=4.9e-114 Score=889.55 Aligned_cols=337 Identities=46% Similarity=0.710 Sum_probs=323.7
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCcc
Q 008849 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (551)
Q Consensus 107 ~~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~ 186 (551)
.|++|++||++||+|+||||+||++||||||||+|||++|||.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~--n~~ 79 (339)
T PRK09314 2 PIKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSK--NTS 79 (339)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCC
Confidence 378899999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred ccccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccCh
Q 008849 187 KLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGH 266 (551)
Q Consensus 187 ~~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~Gh 266 (551)
.++|+||||| |++ +++|||||.|||+|||+||++.++|.||++|||||||++++||||+|+||
T Consensus 80 ~~~taFtvsV----------------da~-~~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~Gh 142 (339)
T PRK09314 80 NHETAFTVSI----------------DAK-EATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGH 142 (339)
T ss_pred CCCCCeEEEE----------------ecC-CCCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCC
Confidence 8899999999 987 56999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEE
Q 008849 267 TEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKA 346 (551)
Q Consensus 267 TEAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~~ 346 (551)
||||||||||||+.|++||||||++||+||+++++++||++|+||+|+|+|||+||+++|++|+++++.+|||.||+|++
T Consensus 143 TEaavdLa~lAGl~p~~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~ 222 (339)
T PRK09314 143 TEGSVDLCKLAGLKPVAVICEIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEK 222 (339)
T ss_pred CchhhHHHHHcCCCceEEEEEEecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchh
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLG 426 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~ 426 (551)
++|++. ++.||+||++|++.. ||||||||+|+|||+|++ ||.+||+.||++|+++| ||||||| ||||+
T Consensus 223 ~~y~~~-~~~eHlALv~G~~~~--~vlVRVHSec~tgd~l~~---~~~~qL~~Al~~I~~eG-GvlvYLr-qegr~---- 290 (339)
T PRK09314 223 YTFLDH-LQNEHIAFKFGEIKL--TPNVKFHKIGSDFELLTS---DKFSELLKAIEYLKKNG-GVLIFLN-TESKE---- 290 (339)
T ss_pred EEEEcC-CCCEEEEEEeCCCCC--CccEEEeccCChHHhhCC---CcHHHHHHHHHHHHHcC-CEEEEEc-CCCCC----
Confidence 999987 899999999999963 899999999999999985 55599999999999999 9999999 99874
Q ss_pred hhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCC-cccccccccCCeEEEEEeec
Q 008849 427 HKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNN-PSKYVGLKGYGLAIAGRIPL 498 (551)
Q Consensus 427 ~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNN-P~K~~aL~g~GIeV~ervpl 498 (551)
+| +.|+||+|||||++|||++||||||| |+|+.+|++|||+|++++.+
T Consensus 291 -----------------an-------~~RdygigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~e~v~~ 339 (339)
T PRK09314 291 -----------------NN-------QVKDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIVETIEL 339 (339)
T ss_pred -----------------cc-------cccchhHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEEEEEeC
Confidence 22 48999999999999999999999999 99999999999999999864
No 8
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=8e-108 Score=855.33 Aligned_cols=350 Identities=32% Similarity=0.508 Sum_probs=332.6
Q ss_pred cccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCccc
Q 008849 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (551)
Q Consensus 108 ~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~ 187 (551)
+.+|++||++||+|+||||+||++|| |||+|||++|||.||||++|++|++|++|++++|++|+||+|.
T Consensus 17 ~~~ie~Ai~~lr~G~~Viv~Dde~Re---dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~-------- 85 (375)
T PRK08815 17 AIRCERAAAELRAGRPVLLTDAQGQR---RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ-------- 85 (375)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCCCe---EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc--------
Confidence 67899999999999999999999995 9999999999999999999999999999999999999999992
Q ss_pred cccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChh
Q 008849 188 LCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHT 267 (551)
Q Consensus 188 ~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhT 267 (551)
.||++| + || +.||++||+.++++ .|.||++||||||
T Consensus 86 ---~~t~~i----------------s-------~i-d~dRa~Ti~~~~~~--~~~d~~~PGHif~--------------- 121 (375)
T PRK08815 86 ---GARVAL----------------P-------DV-DYDRLAALAYLRDG--RVPAPWAPGDALD--------------- 121 (375)
T ss_pred ---CcEEeE----------------e-------cc-hHHHHHHHHHHhcC--CccccCCCCCCcc---------------
Confidence 144444 2 34 46999999999999 5899999999997
Q ss_pred HHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHH-hhhhhhhhccccccCCCc-ccEE
Q 008849 268 EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRR-KRDRLVELAAAAPIPTMW-GPFK 345 (551)
Q Consensus 268 EAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~-~~E~lVer~~~~~lpT~~-G~F~ 345 (551)
||||||||||||.||+|||||+++|+ + +|| +||+++|+|||+||. ++|++|++++++++||.| |+|+
T Consensus 122 EAavDLarLAGl~Paavi~Ei~~~~~--~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~ 190 (375)
T PRK08815 122 AGAVEIARLALLLPAMVAVPLPVHDE--A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTE 190 (375)
T ss_pred HHHHHHHHHcCCCceEEEEEEccCCC--h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEE
Confidence 99999999999999999999999743 2 777 999999999999998 889999999999999995 9999
Q ss_pred EEEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcch
Q 008849 346 AHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGL 425 (551)
Q Consensus 346 ~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGRGiGL 425 (551)
+++|++..++.||+|||+|++.+++||||||||+|+|||+|||.+|||+|||+.||++|+++|+||||||+ |||||+||
T Consensus 191 ~~~yr~~~~~~eH~ALv~G~~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL~-qegrg~gl 269 (375)
T PRK08815 191 FVVFRGGVAQRDQVAIVVGQPDLSSAVPVRVHSSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYLD-QEGRGNGI 269 (375)
T ss_pred EEEEEeCCCCcEEEEEEeCCCCCCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEEc-CCCccchH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999997 99999999
Q ss_pred hhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcccccccccCCeEEEEEeecCCCCChh
Q 008849 426 GHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITME 505 (551)
Q Consensus 426 ~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~ 505 (551)
.+|+++|.+|++|+||++||..+|++.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+.+++|++
T Consensus 270 ~~kl~ay~lq~~g~dt~~a~~~lg~~~D~RdygigAQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~~~~~~~~ 349 (375)
T PRK08815 270 AAKMRAYGYQHAGLDTIDADAQLGFGPDERRYGSAVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRITAE 349 (375)
T ss_pred HHHHHHHhhhhccCCchhhhhhcCCCccceeeeHHHHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCccCCC
Q 008849 506 NKRYLETKRAKMGHVYGLN 524 (551)
Q Consensus 506 n~~YL~tK~~k~gH~l~~~ 524 (551)
|++||+||++||||+|+.+
T Consensus 350 n~~yl~tK~~~~gh~l~~~ 368 (375)
T PRK08815 350 NERYLRTKADRAGHALDVD 368 (375)
T ss_pred hhhHHHHHHHHhCCCcCcc
Confidence 9999999999999999764
No 9
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-75 Score=563.57 Aligned_cols=201 Identities=60% Similarity=0.971 Sum_probs=196.9
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCcc
Q 008849 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (551)
Q Consensus 107 ~~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~ 186 (551)
.|.+|++||++||+|+||||+|||+||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~--n~~ 79 (203)
T COG0108 2 MFERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDN--NTD 79 (203)
T ss_pred chhhHHHHHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCcccccc--CCC
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999998 888
Q ss_pred ccccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccCh
Q 008849 187 KLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGH 266 (551)
Q Consensus 187 ~~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~Gh 266 (551)
.++|+||||| |++. |+|||||.|||.|||.|+++.+.|+||++|||||||+|++||||+|+||
T Consensus 80 ~~~taFtVsV----------------d~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GH 142 (203)
T COG0108 80 AHGTAFTVSV----------------DARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGH 142 (203)
T ss_pred CCCCceEEEE----------------eccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCCh
Confidence 9999999999 9876 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhh
Q 008849 267 TEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 326 (551)
Q Consensus 267 TEAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E 326 (551)
|||+|||||||||.|++||||||++||+|||.+++++||++||||+|+|+|||+||.+.|
T Consensus 143 TEasVdLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e 202 (203)
T COG0108 143 TEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHE 202 (203)
T ss_pred HHHHHHHHHHcCCCCcEEEEEEeCCCccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999876
No 10
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=3.7e-73 Score=555.31 Aligned_cols=201 Identities=46% Similarity=0.825 Sum_probs=197.2
Q ss_pred cccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCccc
Q 008849 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (551)
Q Consensus 108 ~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~ 187 (551)
|++|++||++||+|+||||+||++||||||||+|||++|||.||||+||++|+||+||++++|++|+||+|+.. |++.
T Consensus 14 ~~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~~ 91 (218)
T PRK00910 14 ITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVN--NNSA 91 (218)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccC--CCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999976 8888
Q ss_pred cccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChh
Q 008849 188 LCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHT 267 (551)
Q Consensus 188 ~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhT 267 (551)
.+|+||||| |+++|++|||||.|||+|||+||++.++|.||++|||||||++++|||++|+|||
T Consensus 92 ~~taFtvsV----------------da~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHT 155 (218)
T PRK00910 92 NQTAFTVSI----------------EAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHT 155 (218)
T ss_pred CCCCeEEEE----------------ecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCcc
Confidence 899999999 9988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhh
Q 008849 268 EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 326 (551)
Q Consensus 268 EAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E 326 (551)
|||||||||||+.|++||||||++||+||+++++++||++|+||+|+|+|||+||+++|
T Consensus 156 EaavdLa~lAGl~p~~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 156 EGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred HHHHHHHHHcCCCceEEEEEEecCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999887
No 11
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.8e-72 Score=547.83 Aligned_cols=200 Identities=50% Similarity=0.822 Sum_probs=195.8
Q ss_pred cccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCccc
Q 008849 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (551)
Q Consensus 108 ~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~ 187 (551)
+++|++||++||+|+||||+||++||||||||+|||++|+|.||||++|++|+||+||++++|++|+||+|+.. |++.
T Consensus 13 ~~~i~~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~~ 90 (214)
T PRK01792 13 EERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQH--NTSV 90 (214)
T ss_pred cccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCccccc--CCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999987 8888
Q ss_pred cccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChh
Q 008849 188 LCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHT 267 (551)
Q Consensus 188 ~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhT 267 (551)
++|+||||| |++.|++|||||.|||+|||+|+++.++|.||++|||||||++++||||+|+|||
T Consensus 91 ~~taFtvsV----------------da~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHT 154 (214)
T PRK01792 91 NKTAFTVTI----------------EAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHT 154 (214)
T ss_pred CCCCEEEEE----------------ecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChH
Confidence 899999999 9988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhh
Q 008849 268 EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKR 325 (551)
Q Consensus 268 EAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~ 325 (551)
|||||||||||+.|++||||||++||+||+.+++++||++|+||+|+|+|||+||+++
T Consensus 155 EaavdLa~lAGl~p~~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 155 EAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred HHHHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999864
No 12
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=8.6e-71 Score=541.15 Aligned_cols=201 Identities=48% Similarity=0.776 Sum_probs=196.0
Q ss_pred ccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCcccc
Q 008849 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKL 188 (551)
Q Consensus 109 ~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~~ 188 (551)
++|++||++||+|+||||+||++||||||||++||++|+|.||||+||++|+||++|++++|++|+||+|+.. |.+.+
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~--n~~~~ 96 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS--NRSRY 96 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCccccc--CCCCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999987 88888
Q ss_pred ccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChhH
Q 008849 189 CTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTE 268 (551)
Q Consensus 189 ~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTE 268 (551)
+++||||| |++.|++|||||.|||+|||.||++.++|.||++|||||||++++|||++|+||||
T Consensus 97 ~t~ftvSV----------------Da~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTE 160 (230)
T PRK00014 97 STAFTVSI----------------EAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTE 160 (230)
T ss_pred CCCeEEEE----------------EcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccH
Confidence 99999999 99889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhhh
Q 008849 269 ASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 327 (551)
Q Consensus 269 AAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E~ 327 (551)
||||||||||+.|++||||||++||+||+.+++++||++|+||+|+|+|||+||+++..
T Consensus 161 AavdLa~lAGl~P~~vicEil~~dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~~~ 219 (230)
T PRK00014 161 GSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARGA 219 (230)
T ss_pred HHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999987643
No 13
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=1.2e-70 Score=532.40 Aligned_cols=197 Identities=53% Similarity=0.892 Sum_probs=190.8
Q ss_pred cccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCccc
Q 008849 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (551)
Q Consensus 108 ~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~ 187 (551)
|++|++||++||+|+||||+||++||||||||+|||++|||.||||++|++|+||+||++++|++|+||+|+.. |++.
T Consensus 2 ~~~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~--n~~~ 79 (199)
T TIGR00506 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDI--NTSA 79 (199)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccc--cCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999987 8888
Q ss_pred cccceEEEEEeccCcchhhhhhhcccccCC-CcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccCh
Q 008849 188 LCTAFTVSVVLEMGSETCFLILLKEDAKYG-TTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGH 266 (551)
Q Consensus 188 ~~taFtvsV~~~~~~~~~~~~~~~~Da~~g-ttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~Gh 266 (551)
++++||+|| |+..+ ++|||||.|||+|||.|+++.++|.||++|||||||++++||||+|+||
T Consensus 80 ~~t~~t~sV----------------~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~Gh 143 (199)
T TIGR00506 80 SGTASTFTI----------------TVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGH 143 (199)
T ss_pred CCCceEEEE----------------EeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCCh
Confidence 899988888 65555 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHH
Q 008849 267 TEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 322 (551)
Q Consensus 267 TEAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr 322 (551)
||||||||||||+.|++|||||||+||+||+.+++++||++|+||+|+|+|||+||
T Consensus 144 TEaavdL~~lAGl~p~~vicEil~~dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 144 TEASVDLAELAGLKPAGVICEMMNDDGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred HHHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999996
No 14
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.6e-70 Score=558.18 Aligned_cols=333 Identities=53% Similarity=0.749 Sum_probs=324.9
Q ss_pred ccccccccccccccccccccC-CCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCC
Q 008849 67 TAIETQSDTIGFGTLGAEITP-KTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLV 145 (551)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~v 145 (551)
..++.+++..+|+|+++++.| +++.|+..|+|+++++|+..|.+|+++|+++|.|++|+|+||++||||+||+++|..+
T Consensus 21 ~p~~~r~~i~s~~~~~s~~~p~~~d~~~~~d~e~~~~~~~~~~~si~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~ 100 (357)
T KOG1284|consen 21 KPLESRPDIDSTYTVNSRIDPFPMDWGAATDEEGGPDRLPRVFCSIPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNV 100 (357)
T ss_pred CcccccCccccccccccccCCccccccccccccCCCCCcccceechhhhhhcccCCcEEEEEecccccCCCCcceecccc
Confidence 347889999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCccccccceEEEEEeccCcchhhhhhhcccccCCCcccCChh
Q 008849 146 TPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSAN 225 (551)
Q Consensus 146 T~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~ 225 (551)
+++.++|+++|++|++|+.|..+...+|.||+|+....+.+...++||++| |++.+++||||+.
T Consensus 101 ~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~titv----------------d~~~gt~TgVsah 164 (357)
T KOG1284|consen 101 IREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAFTITV----------------DRAHGTVTGVSAH 164 (357)
T ss_pred cchhhhhhhhcCCceechhhhhcccccccccccccccccccccccceeEEE----------------ehhcCccceeEEe
Confidence 999999999999999999999999999999999997667888999999999 9999999999999
Q ss_pred hHHHHHHHHhc-CCCCCCCccCCCCcccceec-cCCcccccChhHHHHHHHHHcCCCceEEEEEEeCC-CCCcCChhHHH
Q 008849 226 DRAKTVLALAC-RDSKPEDFNRPGHIFPLKYR-EGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLR 302 (551)
Q Consensus 226 DRA~TIr~LAd-p~s~p~Df~rPGHVfPL~a~-~gGvl~R~GhTEAAvDLarlAGl~PaaVicEi~~~-dG~mar~~~l~ 302 (551)
||+.|++.|++ ..+.|+||.+|||++|++++ +|||++|.|||||+||||.++|+.|.+|+||++++ ||.|+++++++
T Consensus 165 de~~T~~~l~s~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~~l~elv~q~~g~m~~lpd~r 244 (357)
T KOG1284|consen 165 DEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLGVLGELVVQADGSMARLPDCR 244 (357)
T ss_pred cccccchhhcccccCChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchhhhhhhhhcCCcccccCccHh
Confidence 99999999999 57889999999999999999 69999999999999999999999999999999998 99999999999
Q ss_pred HHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEEccCCcc
Q 008849 303 QFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLT 382 (551)
Q Consensus 303 ~fA~~h~L~ivsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeClt 382 (551)
.||++|++|+++++|+++|++++..+|+++..++.||+||.|..++|++..++.||++.++|.+..++.++||+|++|++
T Consensus 245 ~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~~kie~r~h~e~l~ 324 (357)
T KOG1284|consen 245 SFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLGTKIEVRGHLECLP 324 (357)
T ss_pred hhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeechhhhheeehhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHHHhCCeEEEEE
Q 008849 383 GDIFGSARCDCGNQLALAMKQIEAAGRGVLVYL 415 (551)
Q Consensus 383 GDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYL 415 (551)
+||||+.+|+|+.||+-+|++|.++|+|+++||
T Consensus 325 ~~i~~~~~~t~~sq~~~~~r~~e~~g~~~~~al 357 (357)
T KOG1284|consen 325 DDIFGNRKRTGGSQLNYFMRTIEAAGRGVFVAL 357 (357)
T ss_pred chhcCCcCCCCccHHHHHHHHHHhhcceeEEeC
Confidence 999999999999999999999999999999996
No 15
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=2.9e-70 Score=528.19 Aligned_cols=194 Identities=63% Similarity=0.984 Sum_probs=180.4
Q ss_pred HHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCcccccc
Q 008849 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCT 190 (551)
Q Consensus 111 I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~~~t 190 (551)
|++||++|++|+||||+||++||||||||++||++|++.||||+||++|+||+||++++|++|+||+|+.. |++.+++
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~--~~~~~~~ 78 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPD--NTDPHGT 78 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSS--CCTTTS-
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCc--CCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999996 8888999
Q ss_pred ceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChhHHH
Q 008849 191 AFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEAS 270 (551)
Q Consensus 191 aFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAA 270 (551)
+||||| |++.|++|||||.|||+|||+||+++++|.||++|||||||++++|||++|+||||||
T Consensus 79 ~ftvsV----------------D~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaa 142 (194)
T PF00926_consen 79 AFTVSV----------------DAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAA 142 (194)
T ss_dssp -BBCEE----------------EESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHH
T ss_pred CeeEee----------------ecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHH
Confidence 999999 9988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHH
Q 008849 271 VDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 322 (551)
Q Consensus 271 vDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr 322 (551)
||||+|||+.|++||||||++||+||+.+++++||++|+||+|+|+|||+||
T Consensus 143 vdLa~lAGl~p~avi~eil~~dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 143 VDLARLAGLSPVAVICEILDDDGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp HHHHHHTTS-SBEEEEEBBETTSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred HHHHHHhCCCCcEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999997
No 16
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-68 Score=514.60 Aligned_cols=192 Identities=57% Similarity=1.010 Sum_probs=188.7
Q ss_pred hhhhccccccCCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHh
Q 008849 328 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 407 (551)
Q Consensus 328 lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~ 407 (551)
.++++.++++||.||.|++++|++..++.+|+|+|+|++.+ +||||||||||+|||+|+|.||||++||+.||++|+++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~ 80 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEE 80 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999976 79999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCccccccccc
Q 008849 408 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 487 (551)
Q Consensus 408 G~GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g 487 (551)
|+||||||| ||||||||.+|++||.|||+|.||++||.++||+.|+|+||+|||||+||||++||||||||+|+.+|.+
T Consensus 81 g~GVvvYLr-qEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygigAqIL~dLGI~~irLLtnnp~K~~~l~~ 159 (193)
T COG0807 81 GSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEG 159 (193)
T ss_pred CceEEEEee-cCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCChhhHHHHHHHHHhcCCcc
Q 008849 488 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 521 (551)
Q Consensus 488 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l 521 (551)
|||+|++|+|++...|++|+.||+||++||||++
T Consensus 160 ~Gi~vverv~~~~~~~~~n~~yl~tk~~k~gh~~ 193 (193)
T COG0807 160 FGINVVERVPLIVGANPENEFYLKTKKEKMGHLL 193 (193)
T ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999986
No 17
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.3e-66 Score=508.89 Aligned_cols=201 Identities=50% Similarity=0.892 Sum_probs=197.2
Q ss_pred cccHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCCCccc
Q 008849 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (551)
Q Consensus 108 ~~~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~n~~~ 187 (551)
|.+|++||++||+|+||||+||++||||||||+|||++|++.|+||++|++|+||++|++++|++|+||+|+.. |.+.
T Consensus 13 ~~~ve~Ai~~Lr~G~pViv~D~~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~--~~~~ 90 (217)
T PRK03353 13 FERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVEN--NTSQ 90 (217)
T ss_pred hhHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccc--cCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999987 8888
Q ss_pred cccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChh
Q 008849 188 LCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHT 267 (551)
Q Consensus 188 ~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhT 267 (551)
++++||||| |++.|++|||||.||++|||.|+++.++|.||++|||||||++++|||++|+|||
T Consensus 91 ~~~~ftvsV----------------d~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~Ght 154 (217)
T PRK03353 91 YGTAFTVTI----------------EAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHT 154 (217)
T ss_pred CCCceEEEE----------------ECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCch
Confidence 899999999 9988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHHHhhh
Q 008849 268 EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 326 (551)
Q Consensus 268 EAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~E 326 (551)
||||||||||||.|++|+|||||+||+|++.+++.+||++|+||+|+++|||+||+++|
T Consensus 155 EaavdLa~lAgl~P~avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 155 EATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred HHHHHHHHHcCCCceEEEEEeecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999887
No 18
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=1.7e-65 Score=502.20 Aligned_cols=193 Identities=28% Similarity=0.425 Sum_probs=179.3
Q ss_pred cHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecChhhHhhcCCCcccccCC------
Q 008849 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKD------ 183 (551)
Q Consensus 110 ~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~~e~~~rL~Lp~m~~~~~------ 183 (551)
+|++||++||+|+||||+||++||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+....
T Consensus 2 ~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~ 81 (219)
T PRK05773 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYR 81 (219)
T ss_pred CHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred ---Cccccc--cceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcC--------CCC----CCCccC
Q 008849 184 ---NEEKLC--TAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACR--------DSK----PEDFNR 246 (551)
Q Consensus 184 ---n~~~~~--taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp--------~s~----p~Df~r 246 (551)
|++.++ ++||||| |+ .+++|||||.|||+|||+||++ ... |.||++
T Consensus 82 ~~~~~~~~~~~taFtvsV----------------d~-~~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~ 144 (219)
T PRK05773 82 KLVKKPSYGDEPAFSLWV----------------NH-VKTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYS 144 (219)
T ss_pred cccccCCCCCCceEEEEE----------------cC-CCCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCC
Confidence 334444 7999999 86 6999999999999999999983 222 799999
Q ss_pred CCCcccceeccCCcccccChhHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHHHHHH
Q 008849 247 PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 322 (551)
Q Consensus 247 PGHVfPL~a~~gGvl~R~GhTEAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr 322 (551)
|||||||+++ ||++|+||||||||||||||+.|++|||||||++ .|++++++++||++||||+|+|+|||+|.
T Consensus 145 PGHVfpL~a~--Gvl~R~GHTEasvdLa~lAGl~P~~vicEil~~~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 145 PGHVPILIGR--GIRERRGHTELSIALAQAAGLEPSAVIAEMLDEK-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred CCCcceeccC--ccccCCChhHHHHHHHHHcCCCccEEEEEEeCCC-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 9999999998 8999999999999999999999999999999975 59999999999999999999999999974
No 19
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=100.00 E-value=1.1e-59 Score=455.35 Aligned_cols=196 Identities=49% Similarity=0.855 Sum_probs=189.6
Q ss_pred hhhhccccccCCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHh
Q 008849 328 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 407 (551)
Q Consensus 328 lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~ 407 (551)
.|+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|+++|+|++.+|||++||+.||++|+++
T Consensus 2 ~v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~ 81 (197)
T PRK00393 2 QLKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCGFQLEAALERIAEE 81 (197)
T ss_pred cEEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCcchHHHHHHHHHHc
Confidence 37899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCccccccccc
Q 008849 408 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 487 (551)
Q Consensus 408 G~GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g 487 (551)
|+||||||+ |+|||+|+.+|+++|.+|+.|.|++++|..+|++.|.|+||+|||||++|||++||||||||+|+.+|.|
T Consensus 82 G~GVlVyL~-~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~mrLLtn~~~k~~~L~g 160 (197)
T PRK00393 82 GRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTE 160 (197)
T ss_pred CCEEEEEEc-CCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHh
Confidence 999999998 8999999999999999999888999999889999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCChhhHHHHHHHHHhcCCccCCC
Q 008849 488 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLN 524 (551)
Q Consensus 488 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~~~ 524 (551)
|||+|++++|++++++++|++||+||++||||.|.++
T Consensus 161 ~GleV~~~~~~~~~~~~~~~~y~~~k~~~~~h~l~~~ 197 (197)
T PRK00393 161 AGINIVERVPLIVGRNPHNEHYLKTKAEKMGHLLSLD 197 (197)
T ss_pred CCCEEEEEecccCCCCchhhHHHHHHHHhhcCCCCCC
Confidence 9999999999988999999999999999999999874
No 20
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=100.00 E-value=1.1e-58 Score=446.37 Aligned_cols=191 Identities=53% Similarity=0.867 Sum_probs=185.1
Q ss_pred hhccccccCCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCC
Q 008849 330 ELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGR 409 (551)
Q Consensus 330 er~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~ 409 (551)
+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|+++|+|++.+|||++||+.||++|+++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~ 80 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCGFQLEAALKQIAEEGR 80 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCCchHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcccccccccCC
Q 008849 410 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYG 489 (551)
Q Consensus 410 GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g~G 489 (551)
||||||+ |+|||+|+.+|+++|++|++|.+|+++|..+|++.|.|+||+|||||+||||++||||||||.|+.+|+|||
T Consensus 81 GVlVyL~-~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~~rLLtn~~~k~~~L~g~g 159 (191)
T TIGR00505 81 GVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAG 159 (191)
T ss_pred EEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeecCCCCChhhHHHHHHHHHhcCCcc
Q 008849 490 LAIAGRIPLLTPITMENKRYLETKRAKMGHVY 521 (551)
Q Consensus 490 IeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l 521 (551)
|+|++++|+++..+++|.+||.||++||||.|
T Consensus 160 leVv~~~~~~~~~~~~~~~y~~~k~~~~~h~~ 191 (191)
T TIGR00505 160 INIVERVPLIVGRNENNEGYLDTKAEKMGHLL 191 (191)
T ss_pred CEEEEEeccccCCCcchHHHHHHHHHhhCCCC
Confidence 99999999888889999999999999999975
No 21
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=100.00 E-value=5.7e-58 Score=433.63 Aligned_cols=169 Identities=66% Similarity=1.138 Sum_probs=137.9
Q ss_pred hhhccccccCCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhC
Q 008849 329 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 408 (551)
Q Consensus 329 Ver~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G 408 (551)
|+|+.+.++||.||+|++++|++..++.+|+|||+|+|.+++||||||||+|++||+|++.+|||+|||++||++|+++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G 80 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCGWQLDKAMRRIAEEG 80 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCcHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcccccccccC
Q 008849 409 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGY 488 (551)
Q Consensus 409 ~GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g~ 488 (551)
+||||||+ ||+||+|+.+|+++|++|++|.||++||..+|++.|.|+||+|||||+||||++||||||||+|+.+|+||
T Consensus 81 ~GVlVyL~-~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~ 159 (169)
T PF00925_consen 81 RGVLVYLR-QEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGF 159 (169)
T ss_dssp SEEEEEE---TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHHHHHHHTT--SEEEE-S-HHHHHHHHHT
T ss_pred CEEEEEEc-CCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcC
Confidence 99999997 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeec
Q 008849 489 GLAIAGRIPL 498 (551)
Q Consensus 489 GIeV~ervpl 498 (551)
||+|+++||+
T Consensus 160 gleV~~~vp~ 169 (169)
T PF00925_consen 160 GLEVVERVPL 169 (169)
T ss_dssp T--EEEEE--
T ss_pred CCEEEEEecC
Confidence 9999999996
No 22
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=100.00 E-value=1.5e-55 Score=424.76 Aligned_cols=193 Identities=59% Similarity=1.024 Sum_probs=185.5
Q ss_pred hhhhccccccCCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHh
Q 008849 328 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 407 (551)
Q Consensus 328 lVer~~~~~lpT~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~ 407 (551)
.|+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|+++|+|++.+|||++||++||++|+++
T Consensus 1 ~V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~ 80 (193)
T cd00641 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCGPQLEEALEEIAEE 80 (193)
T ss_pred CeEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCccccccccc
Q 008849 408 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 487 (551)
Q Consensus 408 G~GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g 487 (551)
|+||||||+ |++++.|+.+|+++|.+|+++.++.+++..++++.|.|+||+|||||++|||++||||||||.|+.+|.|
T Consensus 81 g~GVlV~l~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGAQIL~dLGv~~mrLLs~~~~k~~~L~g 159 (193)
T cd00641 81 GGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEG 159 (193)
T ss_pred CCEEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHHHHHHHHHcCCCeEEECCCCHHHHHHHHh
Confidence 999999999 8999999999999999998888888887778889999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCChhhHHHHHHHHHhcCCcc
Q 008849 488 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 521 (551)
Q Consensus 488 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l 521 (551)
|||+|++++|++++++++|++||.+|++||+|++
T Consensus 160 fglevv~~~~~~~~~~~~~~~y~~~k~~~~~~~~ 193 (193)
T cd00641 160 YGIEVVERVPLEVEPNEENKGYLKTKRDKMGHLL 193 (193)
T ss_pred CCCEEEEEeccCCCCChhhHHHHHhhHHhhccCC
Confidence 9999999999888889999999999999999985
No 23
>PRK07198 hypothetical protein; Validated
Probab=100.00 E-value=2.5e-41 Score=351.95 Aligned_cols=169 Identities=28% Similarity=0.511 Sum_probs=147.4
Q ss_pred EEEEEEEecCCCceEEEEEeccCCC----CCcceEEEccCCcccccccCCCCCChHHH----HHHHHHHHHhCCeEEEEE
Q 008849 344 FKAHCYRSLLDGIEHIAMVKGEIGD----GQDILVRVHSECLTGDIFGSARCDCGNQL----ALAMKQIEAAGRGVLVYL 415 (551)
Q Consensus 344 F~~~~Yr~~~dg~EHlALv~Gdi~~----~~~vLVRVHSeCltGDvFgS~rCDCg~QL----~~AL~~I~~~G~GVLVYL 415 (551)
-++++|+....+.+|+ +.|++.. ..||||||||+|++||+|||.+|||+.|| +.||++|+++|+||||||
T Consensus 210 ~~~~vf~p~~gg~~~~--i~G~p~~~~d~~~PVLVRVHSeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYL 287 (418)
T PRK07198 210 PDLEVFLPPIGGQTVY--IFGDVTDLADPETELTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYN 287 (418)
T ss_pred cceEEEcCCCCCeeEE--EECCcccccCCCCCceEEEeccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3688999999999954 8899853 56899999999999999999999999985 688999999999999999
Q ss_pred eCCCCCCcchhhhhhhhhcccC--CCCchhhh----hhcCCCCCCcChhHHHHHHHHcCCCee-eeccCCcccccccccC
Q 008849 416 RGHEGRGIGLGHKLRAYNLQDD--GHDTVEAN----EELGLPVDSREYGIGAQILRDLGVRTM-KLMTNNPSKYVGLKGY 488 (551)
Q Consensus 416 r~qEGRGiGL~~Kl~ay~LQd~--G~DTveAn----~~LG~~~D~RdYgigAQILrdLGV~kv-rLLTNNP~K~~aL~g~ 488 (551)
+ ||||++||.+|+++|++|+. |.||+++| ..++...|.|+||+|||||++|||+|| |||||||+|+.+|.+|
T Consensus 288 r-QEGRgiGLvnKl~aY~~qk~q~G~DT~da~~~rte~~~G~~D~RdyGlGAQILrdLGV~Km~RLLTNnp~K~~gL~Gf 366 (418)
T PRK07198 288 R-KEGRALGEVTKFLVYNARKRQVGGDTAATYFARTECVAGVQDMRFQELMPDVLHWLGIRRIHRLVSMSNMKYDAITGS 366 (418)
T ss_pred C-CCCcchhHHHHHHHHhhhhhccCCchhhhhhcccccccCCCcceehhHHHHHHHHhCCChhhhhcCCCHHHHHHHHhC
Confidence 8 99999999999999999853 89999975 233334699999999999999999999 9999999999999999
Q ss_pred CeEEEEEeecCCCCChhhHHH-HHHHHH
Q 008849 489 GLAIAGRIPLLTPITMENKRY-LETKRA 515 (551)
Q Consensus 489 GIeV~ervpl~~~~~~~n~~Y-L~tK~~ 515 (551)
||+|++++|+....++++.+- +.+|..
T Consensus 367 GLEVVErVpl~~~~~p~d~~vei~ak~~ 394 (418)
T PRK07198 367 GIEVGERVPIPDELIPADARVEIDAKKA 394 (418)
T ss_pred CCEEEEEeccCcCCCccccccchhhhhh
Confidence 999999999998888776432 344443
No 24
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=99.65 E-value=2.7e-17 Score=169.31 Aligned_cols=154 Identities=26% Similarity=0.319 Sum_probs=135.5
Q ss_pred CCcceEEEccCCcccccccCCCCCChHHHHHHHHHHH---H-hCCeEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhh
Q 008849 369 GQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIE---A-AGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEA 444 (551)
Q Consensus 369 ~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~---~-~G~GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveA 444 (551)
+..++||.|++|.|+..++|.+|+|+.|++.+=..|. + .| |||.|++ |+++|++|..++++|+||+-|.+++++
T Consensus 156 gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~G-GVl~r~g-htea~vdL~~l~gl~pl~~l~elv~q~ 233 (357)
T KOG1284|consen 156 GTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDG-GVLERLG-HTEAGVDLCELAGLYPLGVLGELVVQA 233 (357)
T ss_pred CccceeEEecccccchhhcccccCChhhhccccccccceeecCC-CeEEEcc-ccccchhHHHHcCCCchhhhhhhhhcC
Confidence 4458999999999999999999999999999888887 6 57 9999997 999999999999999999999999999
Q ss_pred hhhcCCCCCCcChhHHHHHHHHcCCCeeeeccCCcccccccccCC--eEEEEEeecCCCC---------ChhhHHHHHHH
Q 008849 445 NEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYG--LAIAGRIPLLTPI---------TMENKRYLETK 513 (551)
Q Consensus 445 n~~LG~~~D~RdYgigAQILrdLGV~kvrLLTNNP~K~~aL~g~G--IeV~ervpl~~~~---------~~~n~~YL~tK 513 (551)
|.-+-+++|.|.|+..-.|+-+++..-+|+|+|||+|++.....- ...++|+++.... ..+-.-|+.||
T Consensus 234 ~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~~k 313 (357)
T KOG1284|consen 234 DGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLGTK 313 (357)
T ss_pred CcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeechh
Confidence 999999999999999999999999999999999999999887765 5567777754211 11225699999
Q ss_pred HHhcCCccCCC
Q 008849 514 RAKMGHVYGLN 524 (551)
Q Consensus 514 ~~k~gH~l~~~ 524 (551)
.++|+|.+.+.
T Consensus 314 ie~r~h~e~l~ 324 (357)
T KOG1284|consen 314 IEVRGHLECLP 324 (357)
T ss_pred hhheeehhccc
Confidence 99999998764
No 25
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=79.92 E-value=4.6 Score=46.22 Aligned_cols=88 Identities=18% Similarity=0.369 Sum_probs=64.1
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 421 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGR 421 (551)
+.|+...+ ...++|+.|-=.+.+|-..= +=+.+..||||-|-. ..|.-.|++.+...|.|||+.+.|-.
T Consensus 33 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~~~~~~~Gvl~iv~NYt-- 106 (574)
T TIGR02361 33 VVYRRDLN-KDKVSLISGGGSGHEPAHAGFVGKGMLTAAVAGDVFASPS---TKQILAAIRAVVGSEAGTLLIVKNYT-- 106 (574)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHHhcCCCCcEEEEecccH--
Confidence 56665443 56899998864444552111 224477899999886 57999999999876789998886433
Q ss_pred CcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008849 422 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 470 (551)
Q Consensus 422 GiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 470 (551)
.|--+||++++.++.-|++
T Consensus 107 ------------------------------GD~lnF~~A~e~a~~eg~~ 125 (574)
T TIGR02361 107 ------------------------------GDRLNFGLAAEKAKAEGYN 125 (574)
T ss_pred ------------------------------HHhhhHHHHHHHHHhCCCc
Confidence 3777899999999999986
No 26
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=79.37 E-value=7.3 Score=41.79 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=63.1
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 421 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGR 421 (551)
+.|+...+ ...++|+.|-=++.+|-..= +=+.|..||||-|-. ..|.-.|++.+. .|.|||+...|-.
T Consensus 35 vv~~~~~~-~~kV~lIsGGGSGHEPah~GfVG~GmLdaav~G~VFaSPs---~~~Il~ai~av~-~~~GvL~iv~NYt-- 107 (331)
T PRK14481 35 VIVRKDKP-PGKVALVSGGGSGHEPAHAGFVGEGMLDAAVCGAVFTSPT---PDQILEAIKAVD-TGAGVLLIVKNYS-- 107 (331)
T ss_pred EEEecCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcH--
Confidence 34555444 56799998764444552111 224588899999886 479999999986 5679998876432
Q ss_pred CcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCe
Q 008849 422 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRT 471 (551)
Q Consensus 422 GiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~k 471 (551)
.|--+|+++++.++.-|++-
T Consensus 108 ------------------------------GD~lnF~lA~E~a~~eGi~v 127 (331)
T PRK14481 108 ------------------------------GDVMNFEMAAELAEMEGIEV 127 (331)
T ss_pred ------------------------------HHhccHHHHHHHHHhCCCCE
Confidence 47789999999999999963
No 27
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=77.95 E-value=7.6 Score=42.07 Aligned_cols=88 Identities=20% Similarity=0.324 Sum_probs=61.2
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 421 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGR 421 (551)
+.|+........++|+.|-=++.+|...= +=+.+..||||-|-. ..|.-.|++.+. .|.|||+.+.|-.
T Consensus 34 vv~~~~~~~~~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VFaSPs---~~qI~~ai~av~-~~~GvLlivkNYt-- 107 (356)
T PRK11468 34 YVTRADAPVAGKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIFTSPT---PDQMFECAMQVD-GGEGVLLIIKNYT-- 107 (356)
T ss_pred EEEeCCCCCCCcEEEEecCCccccccccceecCCcccceeeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccH--
Confidence 34554443346799998764444553111 223477899999886 579999999965 5679998886433
Q ss_pred CcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008849 422 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 470 (551)
Q Consensus 422 GiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 470 (551)
.|--+|++++++++.-|++
T Consensus 108 ------------------------------GDvlNF~mAaE~a~~eGi~ 126 (356)
T PRK11468 108 ------------------------------GDVLNFETATELLHDSGVK 126 (356)
T ss_pred ------------------------------HhhccHHHHHHHHHhCCCc
Confidence 3677889999999988886
No 28
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=73.87 E-value=9.3 Score=40.99 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=62.8
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 421 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGR 421 (551)
+.|+...+....++++.|-=++.+|...= +=+.|..||||-|-. ..|.-.|++.+.. |.|||+...|-.
T Consensus 35 vv~~~~~~~~~kV~lIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~iv~NYt-- 108 (329)
T TIGR02363 35 VIVRKDKKVNGKVALVSGGGSGHEPAHAGFVGYGMLDAAVPGEVFTSPT---PDQILEAIKAVDQ-GAGVLLIVKNYT-- 108 (329)
T ss_pred EEEeCCCCCCCCEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcH--
Confidence 45655444356799998764444553111 223478899999886 5789999988764 679998876432
Q ss_pred CcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008849 422 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 470 (551)
Q Consensus 422 GiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 470 (551)
.|--+|+++++.++.-|++
T Consensus 109 ------------------------------GD~lnF~mA~E~a~~eGi~ 127 (329)
T TIGR02363 109 ------------------------------GDVMNFEMAAELAEDEGIK 127 (329)
T ss_pred ------------------------------HHhccHHHHHHHHHHcCCc
Confidence 4778899999999999996
No 29
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=72.26 E-value=3.2 Score=44.38 Aligned_cols=86 Identities=26% Similarity=0.516 Sum_probs=53.6
Q ss_pred EEEecCCCceEEEEEeccCCCCCcce---E--EEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCC
Q 008849 348 CYRSLLDGIEHIAMVKGEIGDGQDIL---V--RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 422 (551)
Q Consensus 348 ~Yr~~~dg~EHlALv~Gdi~~~~~vL---V--RVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGRG 422 (551)
+|+... ....++|+.|-=+..+|.. | =+=+.|..||||-|-. ..|.-.|++.+ ..+.|||+.+.|-.|
T Consensus 20 v~~~~~-~~~kV~lIsGGGSGHEP~~~GfVG~GmLdAav~G~VFaSPs---~~qI~~ai~~~-~~~~Gvl~iv~NYtG-- 92 (325)
T PF02733_consen 20 VYRKDI-PKDKVALISGGGSGHEPAHAGFVGKGMLDAAVCGDVFASPS---ADQILAAIKAV-DSGKGVLLIVKNYTG-- 92 (325)
T ss_dssp EEETT---TTS-EEEEEEEESSTTTTGGGBSCTSBSEEEEEEETS------HHHHHHHHHHH--SSS-EEEEEESSHH--
T ss_pred EEeCCC-CCCCEEEEecCCCCcccchhhhccCCccceEeeCCCcCCCC---HHHHHHHHHhc-cCCCCEEEEEecchH--
Confidence 444433 5667899987544445421 1 1224477899999886 57999999998 667799988874332
Q ss_pred cchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008849 423 IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 470 (551)
Q Consensus 423 iGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 470 (551)
|--+||+++++++.-|++
T Consensus 93 ------------------------------D~lNF~~A~E~a~~~Gi~ 110 (325)
T PF02733_consen 93 ------------------------------DVLNFGMAAEKARAEGIK 110 (325)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTT--
T ss_pred ------------------------------HHhhHHHHHHHHHhCCCC
Confidence 566799999999999985
No 30
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=71.89 E-value=9.6 Score=43.64 Aligned_cols=87 Identities=21% Similarity=0.364 Sum_probs=61.8
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 421 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGR 421 (551)
+.|+...+ ...++|+.|-=++.+|-..= +=+.|..||||-|-. ..|.-.|++.+. .|.|||+.+.|..
T Consensus 34 vi~~~~~~-~~kV~lisGGGSGHEP~h~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~NYt-- 106 (568)
T PRK14479 34 VVRRTPTP-EGKVAVVSGGGSGHEPAFAGYVGPGMLDAAVCGNVFTSPS---ADQVYAAIRAAD-GGAGVLLIVGNYA-- 106 (568)
T ss_pred EEEecCCC-CCceEEEecCCccccccccccccCCccceeeccCccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcH--
Confidence 34554333 46899998864444553111 223477899999886 578999998886 5679998886433
Q ss_pred CcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008849 422 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 470 (551)
Q Consensus 422 GiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 470 (551)
.|--+|++++++++.-|++
T Consensus 107 ------------------------------GD~lnF~~A~e~a~~~g~~ 125 (568)
T PRK14479 107 ------------------------------GDVMNFGLAAELARAEGID 125 (568)
T ss_pred ------------------------------HHHhhHHHHHHHHHhcCCc
Confidence 3677899999999999985
No 31
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=71.26 E-value=14 Score=39.56 Aligned_cols=87 Identities=24% Similarity=0.407 Sum_probs=62.1
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 421 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGR 421 (551)
+.|+...+ ...++|+.|-=++.+|...= +=+.+..||||-|-. ..|.-.|++.+. .|.|||+...|-.
T Consensus 32 vv~~~~~~-~~kValIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~-~~~GvL~ivkNYt-- 104 (326)
T TIGR02362 32 GIYDSNFD-DQQIPIISGGGSGHEPAHWGYVGEGMLSAAIMGDVFVPPT---AQDILEAIRQVD-RGKGVFVIIKNFE-- 104 (326)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEeccCH--
Confidence 34554443 56899998764444553111 224477899999887 479999999976 5679998886432
Q ss_pred CcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008849 422 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 470 (551)
Q Consensus 422 GiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 470 (551)
.|--+|+++++.++.-|++
T Consensus 105 ------------------------------GD~lNF~mA~E~a~~eGi~ 123 (326)
T TIGR02362 105 ------------------------------ADLSEFSQAIQQARQEGRQ 123 (326)
T ss_pred ------------------------------HHHhhHHHHHHHHHHcCCc
Confidence 3677899999999999996
No 32
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=66.85 E-value=16 Score=39.23 Aligned_cols=87 Identities=21% Similarity=0.369 Sum_probs=61.6
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 421 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGR 421 (551)
+.|+.... ...++|+.|-=++.+|...= +=+.|..||||-|-. ..|.-.|++.+. .|.|||+...|-.
T Consensus 34 vv~~~~~~-~~kV~lIsGGGSGHEPah~GyVG~GmLdAav~G~VFaSPs---~~qI~~ai~av~-~~~GvL~ivkNYt-- 106 (329)
T PRK14483 34 YVYDIEKD-DQLVPIISGGGSGHEPAHIGYVGKGMLTAAVNGSIFTPPT---AEQILAATRLVP-KGKGVFFIIKNFE-- 106 (329)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccH--
Confidence 35554443 56899998864444553111 224478899999886 579999998875 5679998886433
Q ss_pred CcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008849 422 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 470 (551)
Q Consensus 422 GiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 470 (551)
.|--+|+++++.++.-|++
T Consensus 107 ------------------------------GDvlnF~mA~E~a~~eGi~ 125 (329)
T PRK14483 107 ------------------------------ADVAEFSAAIQIARQEGRQ 125 (329)
T ss_pred ------------------------------HHhhhHHHHHHHHHhCCCc
Confidence 3677899999999998886
No 33
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=62.25 E-value=19 Score=41.44 Aligned_cols=87 Identities=16% Similarity=0.290 Sum_probs=61.4
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 008849 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 421 (551)
Q Consensus 347 ~~Yr~~~dg~EHlALv~Gdi~~~~~vLVR-----VHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGR 421 (551)
+.|+...+ ...++||.|-=.+.+|-..= +=+.+..||||-|-. ..|.-.|++.+. .|.|||+.+.|-.
T Consensus 37 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~qi~~ai~~v~-~~~Gvl~ivkNYt-- 109 (584)
T PTZ00375 37 VVVRSDID-KTKVLLISGGGSGHEPAHAGFVGKGWLTAAVCGSVFASPS---TKHVLAAIEYVP-NGPGCLLIVKNYT-- 109 (584)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeecccccCCCC---HHHHHHHHHHhc-CCCCEEEEecccH--
Confidence 45555443 56899998864444553111 223477899999886 579999999775 5679998886433
Q ss_pred CcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCC
Q 008849 422 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 470 (551)
Q Consensus 422 GiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 470 (551)
.|--+||++++.++.-|++
T Consensus 110 ------------------------------GD~lnF~lA~e~a~~eGi~ 128 (584)
T PTZ00375 110 ------------------------------GDILNFELAVEQARARGIQ 128 (584)
T ss_pred ------------------------------HHHhhHHHHHHHHHhCCCc
Confidence 3677899999999999985
No 34
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=60.76 E-value=27 Score=39.45 Aligned_cols=159 Identities=26% Similarity=0.354 Sum_probs=92.3
Q ss_pred HHHHHHHHcCcEEEEEeCCCCCCceeEEEE-----cCCCCHHHHHHHHH----------hCCccEEeecChhhHhhcCCC
Q 008849 112 SEAIEDIRQGKLVIVVDDEDRENEGDLIMA-----ASLVTPEAMAFIVR----------HGTGIVCVSMKGEDLERLELP 176 (551)
Q Consensus 112 ~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~a-----Ae~vT~e~v~fm~r----------~~~Glicval~~e~~~rL~Lp 176 (551)
.+.-+||++|+|||.... -++.- --..|+-.+.-.+| ...|.+|+-++++.+..|++.
T Consensus 30 pqv~eal~~~epVVales-------tiitHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~ 102 (614)
T KOG3009|consen 30 PQVKEALANGEPVVALES-------TIITHGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASS 102 (614)
T ss_pred HHHHHHHhcCCCEEEeEe-------eeeecCCcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHHHHhhc
Confidence 477889999999998653 12221 11122222222222 236999999999999999885
Q ss_pred cccccCCCccccccceEEEEEeccCcchhhhhhhcccccCCCcccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceec
Q 008849 177 LMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYR 256 (551)
Q Consensus 177 ~m~~~~~n~~~~~taFtvsV~~~~~~~~~~~~~~~~Da~~gttTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~ 256 (551)
.-... .-....-+|++++ -- .|-||+-.+ +. +|.. ..-.=|.+||-
T Consensus 103 g~~~~--kvsrRD~~~v~i~----------------rl-vggTtvaaT------m~-iA~~-~gI~vfaTggi------- 148 (614)
T KOG3009|consen 103 GPSAV--KVSRRDIASVVIV----------------RL-VGGTTVAAT------MI-IAHA-AGIVVFATGGI------- 148 (614)
T ss_pred Ccccc--cccccccccccee----------------ee-cCCcchhhh------hh-hccc-ceEEEEecCCc-------
Confidence 43111 1122334677776 11 233443222 11 1111 11233667773
Q ss_pred cCCcccccChh-HHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHH
Q 008849 257 EGGVLKRAGHT-EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIA 316 (551)
Q Consensus 257 ~gGvl~R~GhT-EAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~ 316 (551)
|||-+-+-|+ .++-||-.| |-.|++|+|+=|. +..+.+...+|-+.++.++++..
T Consensus 149 -ggvhr~An~smdisadl~el-grtpvavv~agvk---siLdip~tle~letq~V~vvtlg 204 (614)
T KOG3009|consen 149 -GGVHRGANQSMDISADLTEL-GRTPVAVVSAGVK---SILDIPKTLEYLETQGVVVVTLG 204 (614)
T ss_pred -chhhhccccccchhhhhhhh-cCCcceEEecchh---hhccchhhhhhhccccEEEEEeC
Confidence 6765545445 455566555 7799999998553 46667777888888888877653
No 35
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=49.04 E-value=86 Score=35.67 Aligned_cols=96 Identities=21% Similarity=0.391 Sum_probs=70.2
Q ss_pred CCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEEccC---------CcccccccCCCCCChHHHHHHHHHHHHhCC
Q 008849 339 TMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSE---------CLTGDIFGSARCDCGNQLALAMKQIEAAGR 409 (551)
Q Consensus 339 T~~G~F~~~~Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSe---------CltGDvFgS~rCDCg~QL~~AL~~I~~~G~ 409 (551)
|-+-+-+.+.|++......|++|+.|-=...+|. |.- -.-||||-|.. -.|.-.|++.+ +.-.
T Consensus 29 t~~~~~r~vl~~~~~~~~~kValiSGGGSGHEPt----HAGfVGkGmLtaai~G~iFASPs---tkqI~aairaV-~~~~ 100 (582)
T KOG2426|consen 29 TVHPEDRVVLFRDASAPKPKVALISGGGSGHEPT----HAGFVGKGMLTAAIAGDIFASPS---TKQILAAIRAV-EGEA 100 (582)
T ss_pred eecccceEEEEeecCCCCCceEEEeCCCCCCCcc----cccccccchhhhhhhcccccCCc---HHHHHHHHHHh-ccCC
Confidence 3344567888988766668999999875555663 443 45689998875 36999999999 4446
Q ss_pred eEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeeeec
Q 008849 410 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLM 475 (551)
Q Consensus 410 GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvrLL 475 (551)
|.||...|=. .|-=+||++|.=-|..|++ ++|+
T Consensus 101 GtLlIVKNYT--------------------------------GD~LhFGLAaErara~G~~-ve~v 133 (582)
T KOG2426|consen 101 GTLLIVKNYT--------------------------------GDRLHFGLAAERARAAGIK-VELV 133 (582)
T ss_pred ceEEEEeccc--------------------------------cceeehhhhHHHHHhcCCc-eEEE
Confidence 9999987422 3666899999999999985 4443
No 36
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=48.00 E-value=32 Score=29.19 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=21.1
Q ss_pred cHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEc
Q 008849 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAA 142 (551)
Q Consensus 110 ~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aA 142 (551)
.|++...+|++|+.||++|.+. |..=+++.
T Consensus 38 kv~qv~~qL~~G~avI~~se~~---es~~I~~k 67 (70)
T PF06794_consen 38 KVEQVKQQLKSGEAVIVFSELH---ESVNIVPK 67 (70)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTT-----EEEEEG
T ss_pred HHHHHHHHHHcCCEEEEECCcc---CeecCeec
Confidence 5899999999999999999643 44444443
No 37
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=44.86 E-value=6.3 Score=34.56 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCeeeeccCCccc-----ccccccCCeEEEEEeecCCCCChhhHHHHHHH
Q 008849 460 GAQILRDLGVRTMKLMTNNPSK-----YVGLKGYGLAIAGRIPLLTPITMENKRYLETK 513 (551)
Q Consensus 460 gAQILrdLGV~kvrLLTNNP~K-----~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK 513 (551)
+.+-|++.| +++.++|||+.+ .+-|+..||++.. --.+.+...-..||+.+
T Consensus 22 ~l~~L~~~g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~--~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 22 ALDALRERG-KPVVFLTNNSSRSREEYAKKLKKLGIPVDE--DEIITSGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHHTT-SEEEEEES-SSS-HHHHHHHHHHTTTT--G--GGEEEHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHhcCcCCCc--CEEEChHHHHHHHHHhc
No 38
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=39.78 E-value=23 Score=31.62 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=29.5
Q ss_pred HHH-HHcCCCeee--eccCCcccccccccCCeEEEEEee
Q 008849 462 QIL-RDLGVRTMK--LMTNNPSKYVGLKGYGLAIAGRIP 497 (551)
Q Consensus 462 QIL-rdLGV~kvr--LLTNNP~K~~aL~g~GIeV~ervp 497 (551)
+++ +.+|+++|. ++.+|+.-++..+.+|.++++.++
T Consensus 103 ~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 103 EYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp HHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred HHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEe
Confidence 456 889999987 688899999999999999999877
No 39
>PRK04966 hypothetical protein; Provisional
Probab=38.44 E-value=34 Score=29.22 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=19.1
Q ss_pred cHHHHHHHHHcCcEEEEEeCC
Q 008849 110 SISEAIEDIRQGKLVIVVDDE 130 (551)
Q Consensus 110 ~I~~Ai~aLr~G~~Viv~Dde 130 (551)
.|++...+|++|+.||++|.+
T Consensus 38 kv~qv~~qL~~G~~viv~se~ 58 (72)
T PRK04966 38 KVADVKRQLQSGEAVLVWSEL 58 (72)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 689999999999999999954
No 40
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.89 E-value=92 Score=33.15 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHcCcEEEEEeCCC-CCCceeE--EEEcCCCCHHHHHHHHHhCCcc
Q 008849 109 ASISEAIEDIRQGKLVIVVDDED-RENEGDL--IMAASLVTPEAMAFIVRHGTGI 160 (551)
Q Consensus 109 ~~I~~Ai~aLr~G~~Viv~Dde~-rEnEgdL--v~aAe~vT~e~v~fm~r~~~Gl 160 (551)
..|...+++||+|+.|-+.-|.| ..+++.+ .|+-++.|+-.++.|++.++=-
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~ 236 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAA 236 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCC
Confidence 46999999999999995555454 4455522 5677899999999999987643
No 41
>PRK00304 hypothetical protein; Provisional
Probab=34.79 E-value=65 Score=27.79 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=23.5
Q ss_pred cHHHHHHHHHcCcEEEEEeCCCCCCceeEEEEcCC
Q 008849 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASL 144 (551)
Q Consensus 110 ~I~~Ai~aLr~G~~Viv~Dde~rEnEgdLv~aAe~ 144 (551)
.|++...+|++|+.||++|... |..=+++.+.
T Consensus 37 kv~qv~~qL~~G~~vIvfse~~---es~~i~~k~~ 68 (75)
T PRK00304 37 RVLRVRQALTKGQAVILFDPES---QQCQLMLKHD 68 (75)
T ss_pred HHHHHHHHHHcCCEEEEECCCc---ceeeeeeHhh
Confidence 6899999999999999999542 4443444433
No 42
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=31.41 E-value=26 Score=27.60 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=13.5
Q ss_pred hHHHHHHHhcCCceecHHHH
Q 008849 299 PKLRQFAQTENLKIISIADL 318 (551)
Q Consensus 299 ~~l~~fA~~h~L~ivsi~DL 318 (551)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 46799999999999999884
No 43
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=31.23 E-value=99 Score=31.65 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=29.7
Q ss_pred cCcEEEEEeCCCC-------------CCc-eeEEEEcCCCCHHHHHHHHHhCCccEEeecCh
Q 008849 120 QGKLVIVVDDEDR-------------ENE-GDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167 (551)
Q Consensus 120 ~G~~Viv~Dde~r-------------EnE-gdLv~aAe~vT~e~v~fm~r~~~Glicval~~ 167 (551)
+|+-|||+||--- -++ .++++|.--+.++...-|.+.+-+++|+.++.
T Consensus 123 ~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~ 184 (220)
T COG1926 123 KGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPA 184 (220)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEcCCc
Confidence 3568899997210 111 25666666666666777777777777777553
No 44
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=31.08 E-value=35 Score=36.06 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCeeeeccCCcccccccccCCeEEEEEee
Q 008849 459 IGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIP 497 (551)
Q Consensus 459 igAQILrdLGV~kvrLLTNNP~K~~aL~g~GIeV~ervp 497 (551)
-..++|+..||++|||..-+|.=+.++++-||+|.--||
T Consensus 17 ~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 17 KVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp HHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-
T ss_pred HHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccC
Confidence 357889999999999999999999999999999999988
No 45
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.84 E-value=48 Score=33.97 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCeeeeccCCcc-----cccccccCCeEEEEEeecCCCCCh------hhHHHHHHHHHh
Q 008849 459 IGAQILRDLGVRTMKLMTNNPS-----KYVGLKGYGLAIAGRIPLLTPITM------ENKRYLETKRAK 516 (551)
Q Consensus 459 igAQILrdLGV~kvrLLTNNP~-----K~~aL~g~GIeV~ervpl~~~~~~------~n~~YL~tK~~k 516 (551)
...+=|+.||+++|.++|-.-+ -...|++.|++|+...-+.+.-|- -..-|=-+|+-.
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~ 176 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVF 176 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhc
Confidence 3456699999999999985332 355689999999999888766553 335566666654
No 46
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=29.92 E-value=2.2e+02 Score=32.18 Aligned_cols=235 Identities=17% Similarity=0.162 Sum_probs=124.3
Q ss_pred ccccCCC-cccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChhHHHHHHHHHcCCCceEEEEEEeC
Q 008849 212 EDAKYGT-TTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVD 290 (551)
Q Consensus 212 ~Da~~gt-tTGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAvDLarlAGl~PaaVicEi~~ 290 (551)
.|..+.. .|-++..|...-+..|.+..-..-+.- +|-.|+...+ .....-.|..-.|.+...-.+..++|...|
T Consensus 11 RDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~-ggatfd~~~~----Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N 85 (467)
T PRK14041 11 RDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVW-GGATFDVCVR----FLNENPWERLKEIRKRLKNTKIQMLLRGQN 85 (467)
T ss_pred CccccCcCCccCCHHHHHHHHHHHHHcCCCEEEec-CCccchhhhc----ccCCCHHHHHHHHHHhCCCCEEEEEecccc
Confidence 3777765 488999999999999988753333331 3333443221 122334565555555543344445554333
Q ss_pred CCCCcCChhH----HHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEec-CCCceEE-EEEec
Q 008849 291 DDGSMARLPK----LRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSL-LDGIEHI-AMVKG 364 (551)
Q Consensus 291 ~dG~mar~~~----l~~fA~~h~L~ivsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~~~~Yr~~-~dg~EHl-ALv~G 364 (551)
-=|--...++ ..+.|.++|+.++.+-+=....++-+..++.....-+... | .++|... ....+.+ .+++
T Consensus 86 ~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~-~---~i~~t~~p~~t~e~~~~~a~- 160 (467)
T PRK14041 86 LVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQ-G---AISYTVSPVHTLEYYLEFAR- 160 (467)
T ss_pred ccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEE-E---EEEeccCCCCCHHHHHHHHH-
Confidence 2232122222 2456788999988776555544444445544332211111 0 1222211 0111111 1111
Q ss_pred cCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhh
Q 008849 365 EIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEA 444 (551)
Q Consensus 365 di~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G~GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveA 444 (551)
.+.+ .-+|+-|+ .|..|... ..+...-++.+.++= ++-|-++.|..+|.++.|-+.|+ +.|.|.++.
T Consensus 161 ~l~~-----~Gad~I~i-~Dt~G~l~---P~~v~~Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAi---eaGad~vD~ 227 (467)
T PRK14041 161 ELVD-----MGVDSICI-KDMAGLLT---PKRAYELVKALKKKF-GVPVEVHSHCTTGLASLAYLAAV---EAGADMFDT 227 (467)
T ss_pred HHHH-----cCCCEEEE-CCccCCcC---HHHHHHHHHHHHHhc-CCceEEEecCCCCcHHHHHHHHH---HhCCCEEEe
Confidence 1111 11455555 58888665 567777777777654 47788889999999999999987 568887776
Q ss_pred hhhcCCCCCCc--ChhHHHHHHHHcCCC
Q 008849 445 NEELGLPVDSR--EYGIGAQILRDLGVR 470 (551)
Q Consensus 445 n~~LG~~~D~R--dYgigAQILrdLGV~ 470 (551)
... |+....- .-..-+..|+.+|+.
T Consensus 228 sv~-~~g~gagN~atE~lv~~L~~~g~~ 254 (467)
T PRK14041 228 AIS-PFSMGTSQPPFESMYYAFRENGKE 254 (467)
T ss_pred ecc-ccCCCCCChhHHHHHHHHHhcCCC
Confidence 543 2222111 122234556666654
No 47
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=28.40 E-value=1.3e+02 Score=30.64 Aligned_cols=92 Identities=21% Similarity=0.129 Sum_probs=53.4
Q ss_pred HHHHHHHHHHH-hCCeEEEEEeCCCCCCcchhhhhhhhhccc-CCCCchhhhhhcCCCCCCcChhHHHHHHHHcCCCeee
Q 008849 396 QLALAMKQIEA-AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD-DGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMK 473 (551)
Q Consensus 396 QL~~AL~~I~~-~G~GVLVYLr~qEGRGiGL~~Kl~ay~LQd-~G~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kvr 473 (551)
+|..|.+.+.. ..--+|+|---...=.+|- .++..-..+. .|...... -.....-|++||+++|-
T Consensus 58 ~l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~-~~~~~~i~~~~~g~p~tt~------------~~A~~~AL~alg~~RIa 124 (239)
T TIGR02990 58 RLTEAAALILPDEELDVVAYSCTSASVVIGD-DEVTRAINAAKPGTPVVTP------------SSAAVDGLAALGVRRIS 124 (239)
T ss_pred hHHHHHHHhcCCCCCCEEEEccchhheecCH-HHHHHHHHhcCCCCCeeCH------------HHHHHHHHHHcCCCEEE
Confidence 45555555533 6788999975333233442 2222111111 12222111 12234569999999999
Q ss_pred eccCCccccc-----ccccCCeEEEEEeecCC
Q 008849 474 LMTNNPSKYV-----GLKGYGLAIAGRIPLLT 500 (551)
Q Consensus 474 LLTNNP~K~~-----aL~g~GIeV~ervpl~~ 500 (551)
|+|-.++-++ .|+..|++|+...-+..
T Consensus 125 lvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 125 LLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred EECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 9998776643 47899999998766554
No 48
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=25.87 E-value=70 Score=26.53 Aligned_cols=24 Identities=38% Similarity=0.720 Sum_probs=17.6
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCC
Q 008849 107 GFASISEAIEDIRQGKLVIVVDDED 131 (551)
Q Consensus 107 ~~~~I~~Ai~aLr~G~~Viv~Dde~ 131 (551)
.|+.++++.++|++|++|++ |=+.
T Consensus 8 ~~~D~~~i~~~l~~g~~Viv-nl~~ 31 (73)
T PF04472_consen 8 SFEDAREIVDALREGKIVIV-NLEN 31 (73)
T ss_dssp SGGGHHHHHHHHHTT--EEE-E-TT
T ss_pred CHHHHHHHHHHHHcCCEEEE-ECCC
Confidence 58899999999999999876 6443
No 49
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=24.21 E-value=1.5e+02 Score=30.85 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=19.8
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHhC
Q 008849 133 ENEGDLIMAASLVTPEAMAFIVRHG 157 (551)
Q Consensus 133 EnEgdLv~aAe~vT~e~v~fm~r~~ 157 (551)
||++|.=+.-. +.|+.++.|.+-.
T Consensus 49 eN~~D~Py~~~-~~~etvaaM~~i~ 72 (254)
T PF03437_consen 49 ENMGDVPYPKR-VGPETVAAMARIA 72 (254)
T ss_pred ecCCCCCccCC-CCHHHHHHHHHHH
Confidence 57788888766 9999999998854
No 50
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=23.74 E-value=1.3e+02 Score=30.72 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=35.9
Q ss_pred ccccChh-HHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecH
Q 008849 261 LKRAGHT-EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 315 (551)
Q Consensus 261 l~R~GhT-EAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi 315 (551)
..+.|.| .++++|++-+|-.+++++|-+-..++ ..++..+++|+|+.++
T Consensus 185 vi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~------~~~~l~~~~~vpv~sl 234 (238)
T PRK08558 185 IIRSGETQRALLDLARQAGADVVGVFFLIAVGEV------GIDRAREETDAPVDAL 234 (238)
T ss_pred ccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch------HHHHHhHhcCCCEEEE
Confidence 3567777 77899999999999999886544322 2444556689998875
No 51
>PRK08296 hypothetical protein; Provisional
Probab=23.36 E-value=88 Score=36.35 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=50.2
Q ss_pred cCcEEEEEeCCC-CCCceeEEEEcCCCCHHHHHHHHHhCCccEEeecC-----hhhHhhcCCCcccccCCCccccccceE
Q 008849 120 QGKLVIVVDDED-RENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK-----GEDLERLELPLMVNHKDNEEKLCTAFT 193 (551)
Q Consensus 120 ~G~~Viv~Dde~-rEnEgdLv~aAe~vT~e~v~fm~r~~~Glicval~-----~e~~~rL~Lp~m~~~~~n~~~~~taFt 193 (551)
.|+..||.|.++ .+-+..-|+.+...+|..+..| ....|+|+-.=. .-.|+.+|||.++.....+....+.-.
T Consensus 511 ~G~vrvv~~~~~~~~~~~g~ILV~~~tdP~~~~~~-~~~~GiVte~Gg~~SHaAIvARe~GIPaVvgv~~at~~l~dG~~ 589 (603)
T PRK08296 511 EGPARVIRSADELSEVQEGEILVCPVTSPSWAPIF-AKIKATVTDIGGVMSHAAIVCREYGLPAVVGTGNATKRIKTGQR 589 (603)
T ss_pred EEEEEEeCCHHHHHhccCceEEEeCCCCHHHHHHH-HHheEEEEecCCCcchHHHHHHHcCCCEEEcCccHhhhcCCCCE
Confidence 466556655333 1222334555677788887777 668888876522 346899999999987444555667788
Q ss_pred EEE
Q 008849 194 VSV 196 (551)
Q Consensus 194 vsV 196 (551)
|+|
T Consensus 590 V~v 592 (603)
T PRK08296 590 LRV 592 (603)
T ss_pred EEE
Confidence 888
No 52
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=22.97 E-value=43 Score=29.20 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCeeeeccCCcccccccccCCeEE
Q 008849 459 IGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAI 492 (551)
Q Consensus 459 igAQILrdLGV~kvrLLTNNP~K~~aL~g~GIeV 492 (551)
.++|++|.+| .+|-..+.+++|...++.+|...
T Consensus 5 ~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~ 37 (130)
T PF00107_consen 5 MAIQLAKAMG-AKVIATDRSEEKLELAKELGADH 37 (130)
T ss_dssp HHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE
T ss_pred HHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc
Confidence 3679999999 89999999999999999999543
No 53
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=22.67 E-value=1.4e+02 Score=26.93 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=45.5
Q ss_pred CCCCccCCCCcccceeccCCcccccChhHHHHHH-HHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceecHHHH
Q 008849 240 KPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL-AVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADL 318 (551)
Q Consensus 240 ~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAvDL-arlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivsi~DL 318 (551)
.+.+|.++|=+. |. .|..-+....+.-.++ -+|+...-+|++..+-..-..+ .+++.++|.+++||++.+..=
T Consensus 35 d~~~~l~~gElv-lt---tg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~i--P~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 35 DPSDWLRGGELV-LT---TGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEI--PEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred CHHHhCCCCeEE-EE---CCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccC--CHHHHHHHHHcCCCEEEeCCC
Confidence 466788887542 22 2222333233434444 4666666666666653221222 478899999999999988664
Q ss_pred HHHH
Q 008849 319 IRYR 322 (551)
Q Consensus 319 i~yr 322 (551)
+.|.
T Consensus 109 ~~f~ 112 (123)
T PF07905_consen 109 VPFS 112 (123)
T ss_pred CCHH
Confidence 4443
No 54
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=22.39 E-value=1.7e+02 Score=26.72 Aligned_cols=50 Identities=10% Similarity=0.246 Sum_probs=38.1
Q ss_pred cChhHHHHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcCCceec
Q 008849 264 AGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 314 (551)
Q Consensus 264 ~GhTEAAvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ivs 314 (551)
-.|+...+..++..|+...+++....+++-.+ .......+++..++|++-
T Consensus 82 i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~-~~~~~~~i~~~~gip~LG 131 (134)
T cd03109 82 INHAFLTIEAARIKGIILNGVLGNVIVEKEGL-ATLNVETIERLTGIPVLG 131 (134)
T ss_pred HhHHHHHHHHHHhcCCceeEEEEccCCCccch-hhhhHHHHHHhcCCCEEE
Confidence 55888999999999999999999876653222 224567888888888764
No 55
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.87 E-value=1.6e+02 Score=31.54 Aligned_cols=135 Identities=20% Similarity=0.257 Sum_probs=80.7
Q ss_pred HHHHHHHHc--CCCceEEEEEEeCCC--CCcCChhHHHHHHHhcCCceecHHHHHHH--H---Hh--hhhhhhhcccccc
Q 008849 269 ASVDLAVLA--GLEPVAVLCEIVDDD--GSMARLPKLRQFAQTENLKIISIADLIRY--R---RK--RDRLVELAAAAPI 337 (551)
Q Consensus 269 AAvDLarlA--Gl~PaaVicEi~~~d--G~mar~~~l~~fA~~h~L~ivsi~DLi~y--r---~~--~E~lVer~~~~~l 337 (551)
|+.-|-.|. |..-++|+..--... |.-......+++|.+||||+..-+.|..- . +. .+-.|.-..-.-|
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~l~~l~~D~ivvvayG~il 92 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEELAALDPDLIVVVAYGQIL 92 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHHHhccCCCEEEEEehhhhC
Confidence 344444444 466666666532222 33455678899999999999988766531 0 00 0111111111112
Q ss_pred C------CCcccEEEEE-----EEecCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCC-----hHHHHHHH
Q 008849 338 P------TMWGPFKAHC-----YRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDC-----GNQLALAM 401 (551)
Q Consensus 338 p------T~~G~F~~~~-----Yr~~~dg~EHlALv~Gdi~~~~~vLVRVHSeCltGDvFgS~rCDC-----g~QL~~AL 401 (551)
| -+||-+.+|. ||. -.--|.|+..|+-..+ .++-++...--+||++...+|.= -..|+.-|
T Consensus 93 p~~iL~~~~~G~iNvH~SLLPr~RG--aAPIq~aI~~Gd~~TG-vTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kL 169 (307)
T COG0223 93 PKEILDLPPYGCINLHPSLLPRYRG--AAPIQWAILNGDTETG-VTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKL 169 (307)
T ss_pred CHHHHhcCcCCeEEecCccCccccC--ccHHHHHHHcCCcccc-eEEEEccccCCCcceeeeEEeccCCcccHHHHHHHH
Confidence 2 3467777775 442 1235788999987655 57889999999999999888643 34566655
Q ss_pred HHHHH
Q 008849 402 KQIEA 406 (551)
Q Consensus 402 ~~I~~ 406 (551)
..+..
T Consensus 170 a~~ga 174 (307)
T COG0223 170 AELGA 174 (307)
T ss_pred HHHHH
Confidence 55444
No 56
>PLN02880 tyrosine decarboxylase
Probab=21.12 E-value=1.7e+02 Score=32.83 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=41.6
Q ss_pred ccChhHHHHHHHHHcCCCceEEEEEEeCC-CCCcCChhHHHHHHHhcCCce
Q 008849 263 RAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKI 312 (551)
Q Consensus 263 R~GhTEAAvDLarlAGl~PaaVicEi~~~-dG~mar~~~l~~fA~~h~L~i 312 (551)
+...-|.+++-.+.+|+.|.+|++..=.- -|...+.+++.++|++||+.+
T Consensus 222 d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 222 APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEE
Confidence 34456788887888999999999987543 588899999999999999876
No 57
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=20.68 E-value=5e+02 Score=29.69 Aligned_cols=236 Identities=14% Similarity=0.125 Sum_probs=131.4
Q ss_pred cccCCCc-ccCChhhHHHHHHHHhcCCCCCCCccCCCCcccceeccCCcccccChhHHHHHHHHHcCCCceEEEEEEeCC
Q 008849 213 DAKYGTT-TGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD 291 (551)
Q Consensus 213 Da~~gtt-TGISA~DRA~TIr~LAdp~s~p~Df~rPGHVfPL~a~~gGvl~R~GhTEAAvDLarlAGl~PaaVicEi~~~ 291 (551)
|.++... |.++..|-..-+..|.+..-..-+.- =|--|+...|- -+...+|.--.+.+...-.+-..+|.-.|-
T Consensus 14 DG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~-GGatfd~~~rf----l~Edpwerlr~lr~~~~nt~lqmL~Rg~N~ 88 (499)
T PRK12330 14 DAHQSLMATRMAMEDMVGACEDIDNAGYWSVECW-GGATFDACIRF----LNEDPWERLRTFRKLMPNSRLQMLLRGQNL 88 (499)
T ss_pred chhhcccCccCCHHHHHHHHHHHHhcCCCEEEec-CCcchhhhhcc----cCCCHHHHHHHHHHhCCCCeEEEEEccccc
Confidence 7777655 88888898887777777532222221 11123321110 122345555555555555555555542222
Q ss_pred CCCcCCh----hHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEE-EEEEEec-CCCceEEEEEecc
Q 008849 292 DGSMARL----PKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFK-AHCYRSL-LDGIEHIAMVKGE 365 (551)
Q Consensus 292 dG~mar~----~~l~~fA~~h~L~ivsi~DLi~yr~~~E~lVer~~~~~lpT~~G~F~-~~~Yr~~-~dg~EHlALv~Gd 365 (551)
-|-..-. ..-.+-|.++|+.++.|-|=....+..+..++.+...-. ..+ .++|... ....+.++=+...
T Consensus 89 vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~-----~~~~~i~yt~sp~~t~e~~~~~a~~ 163 (499)
T PRK12330 89 LGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGK-----HAQGTICYTVSPIHTVEGFVEQAKR 163 (499)
T ss_pred CCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCC-----eEEEEEEEecCCCCCHHHHHHHHHH
Confidence 2211111 123556778999999998877777777777776654432 222 4466321 1111111111111
Q ss_pred CCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhC-CeEEEEEeCCCCCCcchhhhhhhhhcccCCCCchhh
Q 008849 366 IGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG-RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEA 444 (551)
Q Consensus 366 i~~~~~vLVRVHSeCltGDvFgS~rCDCg~QL~~AL~~I~~~G-~GVLVYLr~qEGRGiGL~~Kl~ay~LQd~G~DTveA 444 (551)
+.+ .=+|+-|+ -|..|.+. ..+...-++.|.++- ..+-|-++.|...|.++.|-+.|+ +.|.|.++.
T Consensus 164 l~~-----~Gad~I~I-kDtaGll~---P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAi---eAGad~vDt 231 (499)
T PRK12330 164 LLD-----MGADSICI-KDMAALLK---PQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAI---EAGVDVVDT 231 (499)
T ss_pred HHH-----cCCCEEEe-CCCccCCC---HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHH---HcCCCEEEe
Confidence 111 01456665 58888765 567777777777764 268888889999999999999987 678888776
Q ss_pred hhh-cCCCCCCcChhHHHHHHHHcCCC
Q 008849 445 NEE-LGLPVDSREYGIGAQILRDLGVR 470 (551)
Q Consensus 445 n~~-LG~~~D~RdYgigAQILrdLGV~ 470 (551)
... +|...-.=....-+..|+.+|+.
T Consensus 232 ai~Glg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 232 AISSMSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred ecccccccccchhHHHHHHHHHhcCCC
Confidence 543 22222111223345567766654
No 58
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.60 E-value=94 Score=26.43 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.7
Q ss_pred cHHHHHHHHHcCcEEEEEeCC
Q 008849 110 SISEAIEDIRQGKLVIVVDDE 130 (551)
Q Consensus 110 ~I~~Ai~aLr~G~~Viv~Dde 130 (551)
.++++..+|++|+.|||++..
T Consensus 38 kv~~~r~qlq~GeaVivwsel 58 (72)
T COG3089 38 KVADVRRQLQSGEAVIVWSEL 58 (72)
T ss_pred HHHHHHHHHhcCceEEEecch
Confidence 689999999999999999843
No 59
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=20.02 E-value=1.7e+02 Score=31.83 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCeeeecc-CCcc--c-----ccccccCCeEEEEEeecCCCCChhhHHHHHH
Q 008849 460 GAQILRDLGVRTMKLMT-NNPS--K-----YVGLKGYGLAIAGRIPLLTPITMENKRYLET 512 (551)
Q Consensus 460 gAQILrdLGV~kvrLLT-NNP~--K-----~~aL~g~GIeV~ervpl~~~~~~~n~~YL~t 512 (551)
-+.-|-.-||++|-++| -||. . +.-|+..||+|.+ -+.-.....|+.|+..
T Consensus 58 cad~ii~~gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~~--~l~~e~~~l~~~~~~~ 116 (360)
T PRK14719 58 IADDLIAENISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNN--LIRKEIIKYSRGDLKD 116 (360)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCCccchHHHHHHHHCCCEEEe--ehHHHHHHHhHHhhhc
Confidence 56666677999999998 4453 3 5779999999954 2333445567766554
No 60
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=20.02 E-value=2.3e+02 Score=28.57 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCceEEEEEEeCCCCCcCChhHHHHHHHhcC---CceecHHHHHHHHHh
Q 008849 270 SVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTEN---LKIISIADLIRYRRK 324 (551)
Q Consensus 270 AvDLarlAGl~PaaVicEi~~~dG~mar~~~l~~fA~~h~---L~ivsi~DLi~yr~~ 324 (551)
|++..|-+|...++|+|-+ |. .+.+.++=+++| .++++++||+.+...
T Consensus 131 ai~~l~~~G~~V~gv~~iv-DR------~~~~~~~~~~~g~~~~sl~tl~dl~~~~~~ 181 (201)
T COG0461 131 AVEALREAGAEVVGVAVIV-DR------QSGAKEVLKEYGVKLVSLVTLSDLLEVLYE 181 (201)
T ss_pred HHHHHHHcCCeEEEEEEEE-ec------chhHHHHHHhcCCceEEEeeHHHHHHHHHh
Confidence 7888999999999999964 33 266778888899 566778888887665
Done!