RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008849
(551 letters)
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/
3,4-dihydroxy-2-butanone-4-phosphate synthase.
Length = 450
Score = 889 bits (2299), Expect = 0.0
Identities = 365/466 (78%), Positives = 402/466 (86%), Gaps = 17/466 (3%)
Query: 74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRE 133
D+ FGTL AEITP T DFF +D E D DRPT+GF+SI+EA+EDIRQGK V+VVDDEDRE
Sbjct: 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRE 60
Query: 134 NEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFT 193
NEGDLIMAASLVTPEAMAF+V+HG+GIVCVSMKGEDL+RL LPLMV K+NEEK+ TAFT
Sbjct: 61 NEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFT 120
Query: 194 VSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPL 253
V+V DAK+GTTTGVSA+DRAKT+LALA DSKPEDF RPGHIFPL
Sbjct: 121 VTV----------------DAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPL 164
Query: 254 KYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKI 312
+YREGGVLKRAGHTEA+VDLAVLAGL PV VLCEIV+D DGSMARLP+LR+FA+ LKI
Sbjct: 165 RYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKI 224
Query: 313 ISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDI 372
ISIADLIRYRRKR++LVE A A +PT WG F A+CYRS LDGIEHIA VKG+IGDGQD+
Sbjct: 225 ISIADLIRYRRKREKLVERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDV 284
Query: 373 LVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAY 432
LVRVHSECLTGDIFGSARCDCGNQLALAM+ IE AGRGVLVYLRGHEGRGIGLGHKLRAY
Sbjct: 285 LVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAY 344
Query: 433 NLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAI 492
NLQD+G DTVEANEELGLPVDSREYGIGAQILRDLGVRTM+LMTNNP+KY GLKGYGLA+
Sbjct: 345 NLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAV 404
Query: 493 AGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSISDDGN 538
GR+PLLTPIT ENKRYLETKR KMGHVYG + G H G S + N
Sbjct: 405 VGRVPLLTPITKENKRYLETKRTKMGHVYGSDLGGHVSGLESAETN 450
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 402
Score = 683 bits (1766), Expect = 0.0
Identities = 252/413 (61%), Positives = 308/413 (74%), Gaps = 18/413 (4%)
Query: 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK 166
F SI EAI DI GK VIVVDDEDRENEGDLI AA TPE +AF+VRH +G VCV +
Sbjct: 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLT 62
Query: 167 GEDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSAND 226
ED +RL+LP MV H N++ TAFTVSV DA G TTG+SA D
Sbjct: 63 EEDADRLDLPPMVAH--NQDSHGTAFTVSV----------------DAANGVTTGISAAD 104
Query: 227 RAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLC 286
RA T+ LA SKP DF RPGH+FPL+ + GGVL+RAGHTEA+VDLA LAGL+P V+C
Sbjct: 105 RATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVIC 164
Query: 287 EIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKA 346
EIV++DG+MAR+P+LR FA +L +I+IADLI YRR+ ++LVE A +PT +G F+A
Sbjct: 165 EIVNEDGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRA 224
Query: 347 HCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEA 406
Y S+LDG EH+A+VKG+IGDG+D+LVRVHSECLTGD+FGS RCDCG QL A+ QI
Sbjct: 225 IGYTSILDGKEHVALVKGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAE 284
Query: 407 AGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRD 466
GRGV++Y+RG EGRGIGL HKLRAY LQD+G+DTV+AN +LG P D+R+YGIGAQIL D
Sbjct: 285 EGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGYDTVDANLKLGFPADARDYGIGAQILVD 344
Query: 467 LGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGH 519
LGVR+M+L+TNNP K GL+GYGL + R+PL EN+RYL TKR +MGH
Sbjct: 345 LGVRSMRLLTNNPRKIAGLQGYGLHVTERVPLPVRANEENERYLRTKRDRMGH 397
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II/unknown
domain fusion protein; Provisional.
Length = 555
Score = 560 bits (1446), Expect = 0.0
Identities = 229/418 (54%), Positives = 290/418 (69%), Gaps = 27/418 (6%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F SI +A+ IR G+ V+VVDDE+RENEGDLI AA TPE + F+ G++C++M G
Sbjct: 5 FDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTG 64
Query: 168 EDLERLELPLMV--NHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDA--KYGTTTGVS 223
E L+ L+LPLMV N N+ TAFTVS+ DA + G +TG+S
Sbjct: 65 ERLDELDLPLMVDRNTDSNQ----TAFTVSI----------------DAGPELGVSTGIS 104
Query: 224 ANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 283
A DRA+T+ D+KPED RPGHIFPL+ +EGGVLKRAGHTEA+VDLA LAGL P
Sbjct: 105 AEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYPAG 164
Query: 284 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGP 343
V+CEI + DGSMARLP+L+++A+ LK+ISIADLI YR + +R V A A +P+ +G
Sbjct: 165 VICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQ 224
Query: 344 FKAHCYRSLLDGIEHIAMVKGEIGD--GQDILVRVHSECLTGDIFGSARCDCGNQLALAM 401
F+A+ YR+ LDG EH+A+VKG+ + + +LVR+HSECLTGD FGS RCDC QL A+
Sbjct: 225 FQAYGYRNELDGSEHVALVKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAAL 284
Query: 402 KQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGA 461
K IE G GV+VYLR EGRGIGL +KL+AY+LQD G DTVEANE LG P D R YG+GA
Sbjct: 285 KMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDGGLDTVEANERLGFPADLRNYGVGA 343
Query: 462 QILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGH 519
QIL DLG++ ++L+TNNP K GL GYGL + R+PLL N YL TK K+GH
Sbjct: 344 QILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEKLGH 401
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 367
Score = 393 bits (1013), Expect = e-134
Identities = 179/389 (46%), Positives = 230/389 (59%), Gaps = 29/389 (7%)
Query: 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGE 168
ASI E I DIR G++VI+VD+EDRENEGDL+MAA VTPEA+ F+ +HG G++C+++ E
Sbjct: 4 ASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEE 63
Query: 169 DLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRA 228
E+L LPLM N + T FTVS+ +A G TTG+SA DRA
Sbjct: 64 RCEQLGLPLMT--YRNGTQYGTNFTVSI----------------EAAEGVTTGISAADRA 105
Query: 229 KTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEI 288
+T+ A RD+KPED +PGHIFPL + GGVL RAGHTEA DLA LAGL P AV+CEI
Sbjct: 106 RTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICEI 165
Query: 289 VDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHC 348
+ DDG+MARLP L +FA+ LKI +IADLI YR + + +VE A P+ T G F+
Sbjct: 166 MKDDGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVA 225
Query: 349 YRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 408
YR G H+A+VKG I ++ LVRVH D+ + L AM I AG
Sbjct: 226 YRDKPSGSTHLALVKGTICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAG 285
Query: 409 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLG 468
GV+V L +L D A PVD R YGIGAQILRDLG
Sbjct: 286 SGVVVL----------LNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDLG 335
Query: 469 VRTMKLMTNNPSKYVGLKGYGLAIAGRIP 497
V M+L++ +P K+ + G+GL + G +P
Sbjct: 336 VGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP
cyclohydrolase II catalyzes the conversion of GTP to
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'
phosphate, formate, pyrophosphate (APy), and GMP in the
biosynthetic pathway of riboflavin. Riboflavin is the
precursor molecule for the synthesis of the coenzymes
flavin mononucleotide (FMN) and flavin adenine
dinucleotide (FAD) which are essential to cell
metabolism. The enzyme is present in plants and numerous
pathogenic bacteria, especially gram negative organisms,
who are dependent on endogenous synthesis of the vitamin
because they lack an appropriate uptake system. For
animals and humans, which lack this biosynthetic
pathway, riboflavin is the essential vitamin B2. GTP
cyclohydrolase II requires magnesium ions for activity
and has a bound catalytic zinc. The functionally active
form is thought to be a homodimer. A paralogous protein
is encoded in the genome of Streptomyces coelicolor,
which converts GTP to
2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate (FAPy), an activity that has otherwise been
reported for unrelated GTP cyclohydrolases III.
Length = 193
Score = 325 bits (836), Expect = e-110
Identities = 114/192 (59%), Positives = 143/192 (74%), Gaps = 1/192 (0%)
Query: 328 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFG 387
LVE A AP+PT +G F+ + DG EH+A+VKG+ DG+ +LVRVHSECLTGD+FG
Sbjct: 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFG 60
Query: 388 SARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEE 447
S RCDCG QL A+++I G GVL+YLR EGRGIGL +KLRAY LQD G DTVEANE
Sbjct: 61 SLRCDCGPQLEEALEEIAEEGGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEA 119
Query: 448 LGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENK 507
LG P D+R+YG+ AQILRDLG+++++L+TNNP K L+GYG+ + R+PL ENK
Sbjct: 120 LGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERVPLEVEPNEENK 179
Query: 508 RYLETKRAKMGH 519
YL+TKR KMGH
Sbjct: 180 GYLKTKRDKMGH 191
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 387
Score = 325 bits (835), Expect = e-107
Identities = 163/412 (39%), Positives = 241/412 (58%), Gaps = 41/412 (9%)
Query: 115 IEDIRQ----GKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED- 169
+E++R+ GK VI++D RENE D + A ++T E + F + +G G++C++ ED
Sbjct: 1 MEELREAFLEGKPVILIDRN-RENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDL 59
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAK 229
L+R L N G ET F I + YGT TG+SA++RA
Sbjct: 60 LKRGFFKLPSN--------------------GGETNFFIPVD----YGTGTGISASERAL 95
Query: 230 TVLALACRDSKPEDFNRPGHIFPLKYREGGVL--KRAGHTEASVDLAVLAGLEPVAVLCE 287
T LA +F PGH+ L GG+ +R GHTEAS++L+ L G + AV+ E
Sbjct: 96 TCRKLA-EGLYVHEFRYPGHVTLL----GGIGFNRRRGHTEASLELSELLGFKRYAVIVE 150
Query: 288 IVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAH 347
I+D+ G L + + A+ +L ++ I D+ + +R +L+++ A A +PT +G F+
Sbjct: 151 ILDEKGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIV 210
Query: 348 CYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 407
+ + LDG EH+A+VK +G+ LVR+HSEC+TGD S RCDCG+QLA ++ I
Sbjct: 211 SFENHLDGKEHVAIVKEPLGE--VPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKE 268
Query: 408 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDL 467
G G+L+YLR EGRGIGL +K++AY LQD G DTVEAN LG D R+Y QIL+ L
Sbjct: 269 G-GILIYLR-QEGRGIGLSNKIKAYELQDKGLDTVEANRALGFKEDERDYAAAFQILKAL 326
Query: 468 GVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGH 519
G+ ++L+TNNP K L+ YG+ + +PL +T N+ YL+TK K+GH
Sbjct: 327 GIEKVRLLTNNPRKTKALEKYGIEVVETVPLYGEVTKYNRFYLKTKVEKLGH 378
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate
synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is
biosynthesised from ribulose 5-phosphate and serves as
the biosynthetic precursor for the xylene ring of
riboflavin. Sometimes found as a bifunctional enzyme
with pfam00925.
Length = 193
Score = 309 bits (794), Expect = e-103
Identities = 121/212 (57%), Positives = 153/212 (72%), Gaps = 19/212 (8%)
Query: 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDL 170
I EAIE ++ GK VIVVDDEDRENEGDL++AA VTPE++ F++RH G++CV++ E
Sbjct: 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVIAAEKVTPESVNFMIRHARGLICVALTEERA 60
Query: 171 ERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKT 230
+RL LP MV N ++ TAFTVSV DAK GTTTG+SA DRA T
Sbjct: 61 DRLGLPPMV--DRNTDRFGTAFTVSV----------------DAK-GTTTGISAADRALT 101
Query: 231 VLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVD 290
+ ALA ++ PEDF RPGH+FPL+ +EGGVL+R GHTEA+VDLA LAGL P AV+CEI++
Sbjct: 102 IRALADPNAFPEDFVRPGHVFPLRAKEGGVLERRGHTEAAVDLARLAGLTPAAVICEILN 161
Query: 291 DDGSMARLPKLRQFAQTENLKIISIADLIRYR 322
DDG+MARLP L +FA+ L +I+I DLI YR
Sbjct: 162 DDGTMARLPDLEEFAKEHGLPLITIEDLIEYR 193
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 339
Score = 306 bits (785), Expect = e-100
Identities = 165/398 (41%), Positives = 221/398 (55%), Gaps = 72/398 (18%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
+ EAIEDI+ GK++I+VDDEDRENEGDL+ AA TPE + F+ H G++CVS+
Sbjct: 3 IKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTK 62
Query: 168 EDLERLELPLMV-NHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSAND 226
E ++LELP MV + N E TAFTVS+ DAK TTG+SA +
Sbjct: 63 ELAKKLELPPMVSKNTSNHE---TAFTVSI----------------DAK-EATTGISAFE 102
Query: 227 RAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLC 286
R T+ LA SKP DF RPGHIFPL ++GGVL R GHTE SVDL LAGL+PVAV+C
Sbjct: 103 RDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVIC 162
Query: 287 EIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKA 346
EI+ +DG+MAR L FA+ NLK+I ++DL+ YR K + L++ FKA
Sbjct: 163 EIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFA--GFKA 220
Query: 347 HCYRSLLD--GIEHIAMVKGEIGDGQDILVRVHS-----ECLTGDIFGSARCDCGNQLAL 399
Y + LD EHIA GEI V+ H E LT D F ++L
Sbjct: 221 EKY-TFLDHLQNEHIAFKFGEIKLTP--NVKFHKIGSDFELLTSDKF--------SELLK 269
Query: 400 AMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGI 459
A++ ++ G GVL++L + E N+ ++YGI
Sbjct: 270 AIEYLKKNG-GVLIFLNTE----------------------SKENNQV-------KDYGI 299
Query: 460 GAQILRDLGVRTMKLMTNNPSK-YVGLKGYGLAIAGRI 496
GAQIL+ LG++ +KL++++ K YVGL G+GL I I
Sbjct: 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIVETI 337
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase
[Coenzyme metabolism].
Length = 203
Score = 299 bits (769), Expect = 1e-99
Identities = 122/220 (55%), Positives = 156/220 (70%), Gaps = 19/220 (8%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + EAIE +R GK VIVVDDEDRENEGDLI AA VTPE +AF+ RH +G++CV++
Sbjct: 3 FERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTE 62
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDR 227
E +RL LP MV +N + TAFTVSV DA+ TTTG+SA DR
Sbjct: 63 ERAKRLGLPPMV--DNNTDAHGTAFTVSV----------------DAR-ETTTGISAADR 103
Query: 228 AKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCE 287
A T+ ALA +KP DF RPGH+FPL+ ++GGVL+R GHTEA+VDLA LAGL+P V+CE
Sbjct: 104 ALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICE 163
Query: 288 IVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 327
I++DDG+MARLP+L +FA+ L +I+I DLI YR+K +R
Sbjct: 164 IMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHER 203
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP
cyclohydrolase II catalyzes the first committed step in
the biosynthesis of riboflavin.
Length = 169
Score = 286 bits (733), Expect = 8e-95
Identities = 111/170 (65%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 329 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 388
VE A AP+PT +G F+ YR L+DG EH+A+VKG+I + +LVRVHSECLTGD+FGS
Sbjct: 1 VERVAEAPLPTRFGEFRLVAYRDLVDGKEHLALVKGDISPDEPVLVRVHSECLTGDVFGS 60
Query: 389 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 448
RCDCG QL A+++I GRGVLVYLR EGRGIGL +KL+AY LQD G DTVEAN L
Sbjct: 61 LRCDCGEQLEKALRRIAEEGRGVLVYLR-QEGRGIGLLNKLKAYALQDQGLDTVEANLAL 119
Query: 449 GLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPL 498
G P D R+YGIGAQILRDLGVR M+L+TNNP K VGL+GYGL + R+PL
Sbjct: 120 GFPDDLRDYGIGAQILRDLGVRKMRLLTNNPRKIVGLEGYGLEVVERVPL 169
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism].
Length = 193
Score = 285 bits (731), Expect = 3e-94
Identities = 110/192 (57%), Positives = 141/192 (73%), Gaps = 2/192 (1%)
Query: 328 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFG 387
LVE A A +PT G F+ YR +DG EH+A+VKG+I + +LVRVHSECLTGD+ G
Sbjct: 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLG 60
Query: 388 SARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEE 447
S RCDCG QL A+++I G GV+VYLR EGRGIGL +K+RAY LQD G DTVEAN
Sbjct: 61 SLRCDCGEQLEAALRRIAEEGSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLA 119
Query: 448 LGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENK 507
LG P D R+YGIGAQIL+DLG++ ++L+TNNP K GL+G+G+ + R+PL+ EN+
Sbjct: 120 LGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIVGANPENE 179
Query: 508 RYLETKRAKMGH 519
YL+TK+ KMGH
Sbjct: 180 FYLKTKKEKMGH 191
>gnl|CDD|234745 PRK00393, ribA, GTP cyclohydrolase II; Reviewed.
Length = 197
Score = 278 bits (714), Expect = 1e-91
Identities = 97/196 (49%), Positives = 129/196 (65%), Gaps = 1/196 (0%)
Query: 329 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 388
++ A A +PT WG F + L G EH+A+V G+I + +LVRVHSECLTGD S
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFS 62
Query: 389 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 448
RCDCG QL A+++I GRG+L+YLR EGRGIGL +K+RAY LQD G DTVEAN +L
Sbjct: 63 LRCDCGFQLEAALERIAEEGRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQL 121
Query: 449 GLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKR 508
G D R+Y + A +L+ LGV+ ++L+TNNP K L G+ I R+PL+ N+
Sbjct: 122 GFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERVPLIVGRNPHNEH 181
Query: 509 YLETKRAKMGHVYGLN 524
YL+TK KMGH+ L+
Sbjct: 182 YLKTKAEKMGHLLSLD 197
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 369
Score = 281 bits (720), Expect = 3e-90
Identities = 164/401 (40%), Positives = 218/401 (54%), Gaps = 46/401 (11%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F +I E IED RQGK+V++VDDEDRENEGDL++AA +A+ F+ R G++C+++
Sbjct: 3 FNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTD 62
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDR 227
E +RL L MV N TAFTVS+ +A G TTG+SA DR
Sbjct: 63 EHCQRLGLEQMV--PSNGSVFSTAFTVSI----------------EAATGVTTGISAADR 104
Query: 228 AKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCE 287
A+TV A +++PED +PGHIFPL+ REGGVL RAGHTEA DLA LAG P +V+ E
Sbjct: 105 ARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVE 164
Query: 288 IVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAH 347
+++DDG+MAR P L FA +KI +IADLI YR + ++ +PT+ G F+
Sbjct: 165 VMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLV 224
Query: 348 CYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGN-QLALAMKQIEA 406
Y ++G H+AMV G+I Q LVRVH D+ G+ N L A++++
Sbjct: 225 TYEDRIEGGVHMAMVMGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAE 284
Query: 407 AGRGVLVYLRGHEG------RGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSR---EY 457
G GV+V L HE R L R Y SR E
Sbjct: 285 EGHGVVVVLANHESSQALLERIPQLTQPPRQYQRS-----------------QSRIYSEV 327
Query: 458 GIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPL 498
G GAQIL+DLGV ++ + P KY GL GY L + IP
Sbjct: 328 GTGAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPF 367
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase.
Several members of the family are bifunctional,
involving both ribA and ribB function. In these cases,
ribA tends to be on the C-terminal end of the protein
and ribB tends to be on the N-terminal [Biosynthesis of
cofactors, prosthetic groups, and carriers, Riboflavin,
FMN, and FAD].
Length = 199
Score = 250 bits (641), Expect = 1e-80
Identities = 105/215 (48%), Positives = 146/215 (67%), Gaps = 17/215 (7%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + EA+E +++G++V+V DDEDRENEGDLI+AA +TPE +AF+ RH G++CV++
Sbjct: 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITP 61
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDR 227
+ ++L+LP MV+ + + FT++V A T TG+SANDR
Sbjct: 62 DIADKLDLPPMVDINTSASGTASTFTITV-----------------AHRKTFTGISANDR 104
Query: 228 AKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCE 287
A T+ A KP DF RPGH+FPL+ +GGVL R GHTEASVDLA LAGL+P V+CE
Sbjct: 105 ALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICE 164
Query: 288 IVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 322
+++DDG+MAR P+L ++A+ NLK+ISI DLI YR
Sbjct: 165 MMNDDGTMARKPELMEYAKKHNLKLISIEDLIEYR 199
>gnl|CDD|129596 TIGR00505, ribA, GTP cyclohydrolase II. Several members of the
family are bifunctional, involving both ribA and ribB
function. In these cases, ribA tends to be on the
C-terminal end of the protein and ribB tends to be on
the N-terminal. The function of archaeal members of the
family has not been demonstrated and is assigned
tentatively [Biosynthesis of cofactors, prosthetic
groups, and carriers, Riboflavin, FMN, and FAD].
Length = 191
Score = 245 bits (628), Expect = 7e-79
Identities = 101/190 (53%), Positives = 127/190 (66%), Gaps = 1/190 (0%)
Query: 330 ELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSA 389
E A A +PT +G F + G +H+A+VKG+I D+LVR+HSECLTGD S
Sbjct: 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSL 60
Query: 390 RCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELG 449
RCDCG QL A+KQI GRGVL+YLR EGRGIGL +KLRAY LQD G+DTV+AN LG
Sbjct: 61 RCDCGFQLEAALKQIAEEGRGVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLG 119
Query: 450 LPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRY 509
P D R++ + A IL DLGV+ ++L+TNNP K LK G+ I R+PL+ N+ Y
Sbjct: 120 FPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAGINIVERVPLIVGRNENNEGY 179
Query: 510 LETKRAKMGH 519
L+TK KMGH
Sbjct: 180 LDTKAEKMGH 189
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 217
Score = 245 bits (627), Expect = 2e-78
Identities = 102/223 (45%), Positives = 146/223 (65%), Gaps = 18/223 (8%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A++ +R+G+ V+V+DDEDRENEGD+I AA +T E MA +RHG+GIVC+ +
Sbjct: 13 FERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDR 227
E ++L+LP+MV ++N + TAFTV++ +A G TTGVSA DR
Sbjct: 73 ERRKQLDLPMMV--ENNTSQYGTAFTVTI----------------EAAEGVTTGVSAADR 114
Query: 228 AKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCE 287
T+ A +KP D NRPGH+FPL+ + GGVL R GHTEA++DL LAGL+P VLCE
Sbjct: 115 ITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCE 174
Query: 288 IVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVE 330
+ +DDG+MAR P+ FA+ N+ +++I DL+ YR+ +R
Sbjct: 175 LTNDDGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHERKAS 217
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 214
Score = 223 bits (570), Expect = 5e-70
Identities = 100/213 (46%), Positives = 138/213 (64%), Gaps = 18/213 (8%)
Query: 114 AIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERL 173
AI +QG V+V+DDEDRENEGDLI A +TPE MA ++R+G+GIVC+ + E ++L
Sbjct: 19 AINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQL 78
Query: 174 ELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKTVLA 233
+LP MV H + K TAFTV++ +A G +TGVSA DR T+ A
Sbjct: 79 DLPPMVQHNTSVNK--TAFTVTI----------------EAAKGVSTGVSAADRVTTIQA 120
Query: 234 LACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDG 293
++KP D +RPGH+FPL+ GGVL R GHTEA+VDLA LAG + V+CEI +DDG
Sbjct: 121 AIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDG 180
Query: 294 SMARLPKLRQFAQTENLKIISIADLIRYRRKRD 326
+MAR P++ +FA+ +++I DL+ YR K +
Sbjct: 181 TMARTPEIVEFAKKFGYAVVTIEDLVEYRLKYN 213
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 218
Score = 195 bits (496), Expect = 5e-59
Identities = 93/216 (43%), Positives = 137/216 (63%), Gaps = 18/216 (8%)
Query: 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDL 170
+ A++ +R+G+ V+++DDEDRENEGD+I + +T MA ++R +GIVC+ +
Sbjct: 17 VENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQA 76
Query: 171 ERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAKT 230
++LELP MV +N TAFTVS+ +AK+G TTGVSA DR T
Sbjct: 77 DKLELPPMV--VNNNSANQTAFTVSI----------------EAKHGVTTGVSAQDRVTT 118
Query: 231 VLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVD 290
+ A +KPED RPGH+FPL+ R GGVL R GHTE +VDL +AGL+P VLCE+ +
Sbjct: 119 IKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTN 178
Query: 291 DDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 326
DG+MA+ P++ F + N+ +++I D++ YR + D
Sbjct: 179 PDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 230
Score = 192 bits (488), Expect = 1e-57
Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 23/228 (10%)
Query: 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGE 168
+ A++ +R G+ VI++DD DRENE DLI+AA +T MA ++R G+GIVC+ + GE
Sbjct: 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGE 78
Query: 169 DLERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRA 228
L+RLELP MV+ N + TAFTVS+ +A+ G TTGVSA DR
Sbjct: 79 TLDRLELPPMVDS--NRSRYSTAFTVSI----------------EAREGVTTGVSAVDRV 120
Query: 229 KTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEI 288
T+ A ++ D PGH+FPL+ + GGVL R GHTE SVDLA LAGL P VLCE+
Sbjct: 121 TTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCEL 180
Query: 289 VDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAP 336
++ DG+M R L ++A E L ++I +L + + R A AP
Sbjct: 181 MNADGTMMRGASLERYAAKEGLVALAIDELAAHLQAR-----GATGAP 223
>gnl|CDD|236340 PRK08815, PRK08815, GTP cyclohydrolase; Provisional.
Length = 375
Score = 176 bits (449), Expect = 2e-50
Identities = 91/254 (35%), Positives = 134/254 (52%), Gaps = 14/254 (5%)
Query: 269 ASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD-R 327
+V++A LA L P V + D A + +++ADL
Sbjct: 123 GAVEIARLALLLPAMVAVPLPVHDE-----------AAFAGCQALALADLDAGCATSAAA 171
Query: 328 LVELAAAAPIPTM-WGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIF 386
EL P+P G + +R + + +A+V G+ + VRVHS CLTGD+F
Sbjct: 172 GYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVAIVVGQPDLSSAVPVRVHSSCLTGDLF 231
Query: 387 GSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANE 446
GS +CDCG+QL + +++ G GVL+YL EGRG G+ K+RAY Q G DT++A+
Sbjct: 232 GSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGRGNGIAAKMRAYGYQHAGLDTIDADA 290
Query: 447 ELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMEN 506
+LG D R YG +LR LG+ ++L+TNNP+K L+ G+ + RI + IT EN
Sbjct: 291 QLGFGPDERRYGSAVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRITAEN 350
Query: 507 KRYLETKRAKMGHV 520
+RYL TK + GH
Sbjct: 351 ERYLRTKADRAGHA 364
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Validated.
Length = 219
Score = 90.1 bits (224), Expect = 1e-20
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 21/217 (9%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
EA + + G V++ D + RE E D++ A VT +++ + ++ G++C + +
Sbjct: 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSE 61
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVVLEMGSETCFLILLKEDAKYGTTTGVSANDRAK 229
+ L L + E G E F + + T TG+S DRA
Sbjct: 62 GKTLGLNFLAEILKRHELYRKLVK---KPSYGDEPAFSLWVNH---VKTKTGISDYDRAL 115
Query: 230 T------VLALACRDSKP------EDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLA 277
T V+ LA + + E+F PGH+ L R G+ +R GHTE S+ LA A
Sbjct: 116 TIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRERRGHTELSIALAQAA 173
Query: 278 GLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 314
GLEP AV+ E++D+ S+ K ++ A+ ++
Sbjct: 174 GLEPSAVIAEMLDEKLSL-SKEKAKKIAKNLGFPLVE 209
>gnl|CDD|235959 PRK07198, PRK07198, hypothetical protein; Validated.
Length = 418
Score = 46.6 bits (111), Expect = 2e-05
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 372 ILVRVHSECLTGDIFGSARCDCGNQLALAMKQ-IEAA---GRGVLVYLRGHEGRGIGLGH 427
+ RVH EC D+FGS C C L +++ I A G G++VY R EGR +G
Sbjct: 240 LTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR-KEGRALGEVT 298
Query: 428 KLRAYNL---QDDGHDTVE---ANEELGLPV-DSREYGIGAQILRDLGVRTM-KLMTNNP 479
K YN Q G DT A E V D R + +L LG+R + +L++ +
Sbjct: 299 KFLVYNARKRQVGG-DTAATYFARTECVAGVQDMRFQELMPDVLHWLGIRRIHRLVSMSN 357
Query: 480 SKYVGLKGYGLAIAGRIPL 498
KY + G G+ + R+P+
Sbjct: 358 MKYDAITGSGIEVGERVPI 376
>gnl|CDD|183361 PRK11890, PRK11890, phosphate acetyltransferase; Provisional.
Length = 312
Score = 32.7 bits (75), Expect = 0.46
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 132 RENEGDLIMAASLVTPEAMAFIVRHGTGI 160
RE E + +M SL T E M+ +V TG+
Sbjct: 93 REGEAEALMKGSLHTDELMSAVVARDTGL 121
>gnl|CDD|173952 cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the
oxidation of 5-hydroxyvalerate to 5-oxovalerate with
NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD)
is an iron-containing (type III) NAD-dependent alcohol
dehydrogenase. It plays a role in the cyclopentanol
metabolism biochemical pathway. It catalyzes the
oxidation of 5-hydroxyvalerate to 5-oxovalerate with
NAD+ as cofactor. This cyclopentanol (cpn) degradation
pathway is present in some bacteria which can use
cyclopentanol as sole carbon source. In Comamonas sp.
strain NCIMB 9872, this enzyme is encoded by the CpnD
gene.
Length = 376
Score = 32.1 bits (74), Expect = 0.67
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 446 EELGLPVDSREYGIGAQILRDLGVRTMK---LMTNNP 479
+LG+P RE G+ L L MK L+ NNP
Sbjct: 327 ADLGIPQRLREVGVTEDDLPMLAEDAMKQTRLLVNNP 363
>gnl|CDD|214861 smart00857, Resolvase, Resolvase, N terminal domain. The
N-terminal domain of the resolvase family contains the
active site and the dimer interface. The extended arm at
the C-terminus of this domain connects to the C-terminal
helix-turn-helix domain of resolvase.
Length = 148
Score = 30.7 bits (70), Expect = 0.93
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 99 FDLDRPTKGFASISEAIEDIRQGKL-VIVVDDEDR--ENEGDLIMAASLVTPEAMAFIVR 155
DRP G + D+R G + V+VV DR + DL+ + +
Sbjct: 47 KKADRP--GLQ---RLLADLRAGDIDVLVVYKLDRLGRSLRDLL--------ALLELLEE 93
Query: 156 HGTGIVCVSMKGEDLERLELPLMVN 180
G +V + D L+++
Sbjct: 94 KGVRLVSLKEGILDTSTPAGRLLLD 118
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 31.2 bits (71), Expect = 1.8
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 62 NNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGF 108
+ K T IE + TIGFG+ T D++ L + G+
Sbjct: 230 SKDKPTLIEVTT-TIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGW 275
>gnl|CDD|153059 cd03589, CLECT_CEL-1_like, C-type lectin-like domain (CTLD) of the
type found in CEL-1 from Cucumaria echinata and
Echinoidin from Anthocidaris crassispina.
CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of
the type found in CEL-1 from Cucumaria echinata and
Echinoidin from Anthocidaris crassispina. CTLD refers
to a domain homologous to the carbohydrate-recognition
domains (CRDs) of the C-type lectins. The CEL-1 CTLD
binds three calcium ions and has a high specificity for
N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong
cytotoxicity which is inhibited by GalNAc. This protein
may play a role as a toxin defending against predation.
Echinoidin is found in the coelomic fluid of the sea
urchin and is specific for GalBeta1-3GalNAc. Echinoidin
has a cell adhesive activity towards human cancer cells
which is not mediated through the CTLD. Both CEL-1 and
Echinoidin are multimeric proteins comprised of multiple
dimers linked by disulfide bonds.
Length = 137
Score = 29.2 bits (66), Expect = 2.7
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 338 PTMWGPFKAHCYRSLLDGIEHIAM--------VKGEIGDGQDILVRVHSE 379
PT W F +CYR D + + G I LV +HS+
Sbjct: 2 PTFWTAFGGYCYRFFGDRLTWEEAELRCRSFSIPGLIAH----LVSIHSQ 47
>gnl|CDD|217684 pfam03710, GlnE, Glutamate-ammonia ligase adenylyltransferase.
Conserved repeated domain found in GlnE proteins. These
proteins adenylate and deadenylate glutamine synthases:
ATP + {L-Glutamate:ammonia ligase (ADP-forming)} =
Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase
(ADP-forming)}. The family is related to the pfam01909
domain.
Length = 251
Score = 30.0 bits (68), Expect = 2.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 280 EPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADL 318
E L + +++ M R LRQF + + L+ I+ ADL
Sbjct: 46 ELREALARVPEEEQLMDR---LRQFKRRQLLR-IAAADL 80
>gnl|CDD|220506 pfam09989, DUF2229, CoA enzyme activase uncharacterized domain
(DUF2229). Members of this family include various
bacterial hypothetical proteins, as well as CoA enzyme
activases. The exact function of this domain has not, as
yet, been defined.
Length = 218
Score = 29.8 bits (68), Expect = 3.2
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 402 KQIEAAGRGVLVYLRGHEGRGIGL-GHKLRAYNLQDD--GHDTVEANEELGLPV 452
K + G L YL +GI L G Y++ D H E LG+ V
Sbjct: 162 KDLRKKGEEALAYLEEEGKKGIVLLGR---PYHIYDPEINHGIPEKLTSLGIAV 212
>gnl|CDD|216395 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This
TIM alpha/beta barrel structure is found in xylose
isomerase and in endonuclease IV (EC:3.1.21.2). This
domain is also found in the N termini of bacterial
myo-inositol catabolism proteins. These are involved in
the myo-inositol catabolism pathway, and is required for
growth on myo-inositol in Rhizobium leguminosarum bv.
viciae.
Length = 202
Score = 28.1 bits (63), Expect = 8.4
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 19/109 (17%)
Query: 271 VDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY--------- 321
++ A G + V + + + +L+ + L+I S+ +
Sbjct: 1 LEAAAELGFDGVELFFDYPRPASDKEEIEELKALLKEYGLEISSLNPSLGLLEPDEHERA 60
Query: 322 --RRKRDRLVELAAAAPIPTM--------WGPFKAHCYRSLLDGIEHIA 360
R +ELAAA + G + L + + +A
Sbjct: 61 AALEALKRAIELAAALGAKVVVVHPGSAPAGKDREEALDRLAESLNELA 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.397
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,504,405
Number of extensions: 2905153
Number of successful extensions: 2666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2619
Number of HSP's successfully gapped: 46
Length of query: 551
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 449
Effective length of database: 6,413,494
Effective search space: 2879658806
Effective search space used: 2879658806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)