Query 008850
Match_columns 551
No_of_seqs 539 out of 3759
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 17:22:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 4.5E-76 9.6E-81 602.5 49.6 418 99-534 2-427 (454)
2 KOG1335 Dihydrolipoamide dehyd 100.0 3.3E-72 7.1E-77 531.3 39.0 419 100-533 38-467 (506)
3 PTZ00153 lipoamide dehydrogena 100.0 1E-66 2.3E-71 558.3 54.0 430 100-534 115-623 (659)
4 PRK06467 dihydrolipoamide dehy 100.0 2E-66 4.3E-71 547.0 51.1 417 100-534 3-428 (471)
5 PRK07846 mycothione reductase; 100.0 3E-66 6.5E-71 542.2 48.8 409 101-533 1-417 (451)
6 PLN02546 glutathione reductase 100.0 5.4E-66 1.2E-70 547.0 50.7 413 99-535 77-506 (558)
7 TIGR01421 gluta_reduc_1 glutat 100.0 2E-65 4.4E-70 536.2 50.6 413 101-535 2-424 (450)
8 TIGR01424 gluta_reduc_2 glutat 100.0 2.2E-65 4.8E-70 536.7 50.4 415 101-537 2-422 (446)
9 PRK06370 mercuric reductase; V 100.0 3.1E-65 6.7E-70 538.9 50.9 419 98-535 2-427 (463)
10 TIGR03452 mycothione_red mycot 100.0 3.9E-65 8.5E-70 534.4 47.8 409 101-533 2-420 (452)
11 TIGR01423 trypano_reduc trypan 100.0 6.1E-65 1.3E-69 533.8 48.5 413 100-535 2-445 (486)
12 PRK06116 glutathione reductase 100.0 9.9E-65 2.1E-69 533.5 50.2 414 100-536 3-425 (450)
13 PRK06115 dihydrolipoamide dehy 100.0 1.6E-64 3.5E-69 532.2 51.2 418 101-534 3-429 (466)
14 PRK06416 dihydrolipoamide dehy 100.0 3.1E-64 6.7E-69 531.8 50.9 417 100-534 3-425 (462)
15 PTZ00058 glutathione reductase 100.0 2.4E-64 5.1E-69 534.0 49.6 413 99-534 46-530 (561)
16 PRK05249 soluble pyridine nucl 100.0 4.4E-64 9.4E-69 530.9 49.3 414 99-533 3-425 (461)
17 TIGR02053 MerA mercuric reduct 100.0 6.5E-64 1.4E-68 529.2 49.9 413 102-533 1-420 (463)
18 PLN02507 glutathione reductase 100.0 7.6E-64 1.6E-68 529.0 49.3 415 99-535 23-457 (499)
19 PRK05976 dihydrolipoamide dehy 100.0 2.5E-63 5.3E-68 525.3 51.8 415 100-533 3-434 (472)
20 KOG0405 Pyridine nucleotide-di 100.0 1.2E-64 2.5E-69 474.0 36.6 415 98-533 17-444 (478)
21 PRK14694 putative mercuric red 100.0 1.3E-63 2.8E-68 526.4 49.3 417 97-535 2-427 (468)
22 PRK07845 flavoprotein disulfid 100.0 2.2E-63 4.7E-68 523.7 50.4 411 102-533 2-428 (466)
23 PRK06912 acoL dihydrolipoamide 100.0 2.8E-63 6E-68 522.6 49.8 414 103-534 2-421 (458)
24 PRK06327 dihydrolipoamide dehy 100.0 4.4E-63 9.4E-68 523.0 50.9 419 100-534 3-438 (475)
25 PRK07818 dihydrolipoamide dehy 100.0 5.3E-63 1.1E-67 522.0 51.5 417 101-535 4-430 (466)
26 PRK06292 dihydrolipoamide dehy 100.0 9.4E-63 2E-67 520.5 49.0 415 100-535 2-424 (460)
27 TIGR01438 TGR thioredoxin and 100.0 1.7E-62 3.7E-67 516.8 49.1 417 101-535 2-442 (484)
28 PRK14727 putative mercuric red 100.0 2.1E-62 4.7E-67 517.8 49.8 412 100-534 15-437 (479)
29 PRK13748 putative mercuric red 100.0 9E-62 2E-66 525.3 48.3 415 100-536 97-521 (561)
30 PRK08010 pyridine nucleotide-d 100.0 4.9E-61 1.1E-65 504.2 48.4 396 101-535 3-411 (441)
31 PTZ00052 thioredoxin reductase 100.0 2.8E-60 6E-65 502.4 48.7 414 100-535 4-452 (499)
32 PRK07251 pyridine nucleotide-d 100.0 3.6E-60 7.8E-65 497.2 49.0 397 101-536 3-411 (438)
33 TIGR01350 lipoamide_DH dihydro 100.0 1.1E-59 2.3E-64 497.7 50.7 415 102-535 2-425 (461)
34 KOG4716 Thioredoxin reductase 100.0 3E-56 6.6E-61 415.8 28.8 421 98-533 16-460 (503)
35 PRK13512 coenzyme A disulfide 100.0 6.7E-49 1.4E-53 410.8 35.3 366 102-533 2-402 (438)
36 PRK09564 coenzyme A disulfide 100.0 7.8E-48 1.7E-52 405.4 35.7 369 103-531 2-406 (444)
37 TIGR03385 CoA_CoA_reduc CoA-di 100.0 8.6E-43 1.9E-47 364.9 30.7 321 202-544 54-419 (427)
38 PRK14989 nitrite reductase sub 100.0 1E-40 2.2E-45 368.9 34.5 356 102-530 4-387 (847)
39 PRK09754 phenylpropionate diox 100.0 3.7E-38 8E-43 326.1 31.1 342 102-522 4-369 (396)
40 PRK04965 NADH:flavorubredoxin 100.0 1.6E-36 3.5E-41 312.1 34.4 345 102-526 3-368 (377)
41 TIGR02374 nitri_red_nirB nitri 100.0 1.2E-36 2.7E-41 337.2 31.9 344 104-523 1-367 (785)
42 PRK10262 thioredoxin reductase 100.0 5.7E-35 1.2E-39 294.2 28.7 291 99-436 4-311 (321)
43 TIGR01292 TRX_reduct thioredox 100.0 1.4E-34 3.1E-39 289.0 28.9 285 102-436 1-297 (300)
44 COG0492 TrxB Thioredoxin reduc 100.0 4.2E-34 9E-39 279.9 28.2 285 100-436 2-297 (305)
45 PTZ00318 NADH dehydrogenase-li 100.0 5.2E-34 1.1E-38 297.3 29.5 281 101-437 10-345 (424)
46 COG1252 Ndh NADH dehydrogenase 100.0 1.4E-33 3E-38 282.0 27.3 282 101-436 3-328 (405)
47 TIGR03143 AhpF_homolog putativ 100.0 2E-33 4.4E-38 301.4 28.6 285 100-436 3-305 (555)
48 TIGR03140 AhpF alkyl hydropero 100.0 1.3E-33 2.7E-38 300.9 25.3 287 99-437 210-510 (515)
49 TIGR01316 gltA glutamate synth 100.0 4E-33 8.6E-38 292.0 26.2 278 100-436 132-446 (449)
50 PRK15317 alkyl hydroperoxide r 100.0 1.1E-32 2.3E-37 294.1 29.4 286 99-436 209-508 (517)
51 PRK12831 putative oxidoreducta 100.0 1E-32 2.2E-37 289.4 27.5 280 100-436 139-457 (464)
52 COG1251 NirB NAD(P)H-nitrite r 100.0 3.8E-32 8.3E-37 280.1 21.6 345 102-524 4-373 (793)
53 TIGR03169 Nterm_to_SelD pyridi 100.0 1.4E-31 3E-36 274.6 25.7 276 103-436 1-307 (364)
54 PRK09853 putative selenate red 100.0 5.6E-31 1.2E-35 289.1 28.9 278 100-439 538-841 (1019)
55 PRK11749 dihydropyrimidine deh 100.0 4.7E-31 1E-35 277.9 27.2 278 100-436 139-448 (457)
56 PRK12778 putative bifunctional 100.0 6.8E-31 1.5E-35 291.9 27.4 279 100-436 430-746 (752)
57 PRK12770 putative glutamate sy 100.0 1.9E-30 4.2E-35 264.2 27.9 282 102-437 19-347 (352)
58 PRK12779 putative bifunctional 100.0 2E-30 4.3E-35 289.7 28.9 278 101-436 306-623 (944)
59 TIGR03315 Se_ygfK putative sel 100.0 1.8E-30 4E-35 286.7 27.9 277 100-438 536-838 (1012)
60 KOG1336 Monodehydroascorbate/f 100.0 1.2E-30 2.6E-35 258.0 21.5 282 101-438 74-383 (478)
61 PRK12810 gltD glutamate syntha 100.0 1E-29 2.2E-34 268.2 27.5 281 100-436 142-461 (471)
62 PRK12814 putative NADPH-depend 100.0 3.8E-29 8.2E-34 272.5 27.6 276 101-436 193-497 (652)
63 PRK12775 putative trifunctiona 100.0 4E-29 8.6E-34 281.9 26.6 278 101-436 430-751 (1006)
64 TIGR01318 gltD_gamma_fam gluta 100.0 1.8E-28 4E-33 257.7 27.5 278 100-436 140-462 (467)
65 PRK12769 putative oxidoreducta 100.0 2.4E-28 5.2E-33 267.5 27.6 278 100-436 326-648 (654)
66 KOG0404 Thioredoxin reductase 100.0 6.2E-28 1.3E-32 214.0 19.2 284 100-433 7-312 (322)
67 TIGR01317 GOGAT_sm_gam glutama 100.0 3.2E-27 6.9E-32 249.2 26.9 281 101-436 143-475 (485)
68 KOG2495 NADH-dehydrogenase (ub 100.0 7.5E-28 1.6E-32 233.5 19.5 289 98-436 52-393 (491)
69 PRK13984 putative oxidoreducta 100.0 2.8E-27 6.1E-32 257.6 25.8 278 100-436 282-598 (604)
70 PRK12809 putative oxidoreducta 100.0 5.5E-27 1.2E-31 255.6 26.9 278 101-437 310-632 (639)
71 COG3634 AhpF Alkyl hydroperoxi 100.0 1E-27 2.2E-32 225.7 14.2 281 100-433 210-508 (520)
72 PLN02852 ferredoxin-NADP+ redu 99.9 9.4E-26 2E-30 234.3 27.2 285 101-437 26-419 (491)
73 PRK12771 putative glutamate sy 99.9 5.8E-25 1.2E-29 237.2 25.6 278 100-436 136-440 (564)
74 TIGR01372 soxA sarcosine oxida 99.9 1.3E-24 2.9E-29 246.9 29.7 276 100-436 162-468 (985)
75 PLN02172 flavin-containing mon 99.9 1.6E-24 3.5E-29 226.1 26.5 296 101-439 10-352 (461)
76 COG0446 HcaD Uncharacterized N 99.9 1.2E-23 2.5E-28 219.9 27.4 289 204-518 65-383 (415)
77 PF00743 FMO-like: Flavin-bind 99.9 3.8E-22 8.2E-27 210.9 23.6 321 102-439 2-396 (531)
78 KOG1346 Programmed cell death 99.9 2.5E-22 5.5E-27 193.4 11.6 229 204-446 269-527 (659)
79 COG0493 GltD NADPH-dependent g 99.9 9.9E-21 2.1E-25 194.9 16.5 282 102-436 124-447 (457)
80 PF13738 Pyr_redox_3: Pyridine 99.8 2E-20 4.4E-25 175.6 13.9 185 105-304 1-202 (203)
81 PRK06567 putative bifunctional 99.8 2E-19 4.3E-24 195.7 21.9 285 100-436 382-766 (1028)
82 COG2072 TrkA Predicted flavopr 99.8 1.8E-19 3.9E-24 187.5 13.9 192 98-304 5-210 (443)
83 KOG1399 Flavin-containing mono 99.8 8.1E-19 1.8E-23 179.8 17.7 300 101-438 6-332 (448)
84 KOG3851 Sulfide:quinone oxidor 99.8 1.1E-18 2.3E-23 163.5 15.4 298 100-450 38-375 (446)
85 PF07992 Pyr_redox_2: Pyridine 99.8 1.7E-19 3.6E-24 169.1 9.1 141 103-276 1-159 (201)
86 KOG0399 Glutamate synthase [Am 99.8 1.8E-18 3.8E-23 183.4 17.1 284 100-436 1784-2116(2142)
87 KOG2755 Oxidoreductase [Genera 99.8 1.2E-17 2.7E-22 152.3 16.1 188 218-416 79-321 (334)
88 PF13434 K_oxygenase: L-lysine 99.8 2.6E-18 5.7E-23 172.5 10.5 256 101-369 2-340 (341)
89 COG3486 IucD Lysine/ornithine 99.8 1.1E-16 2.4E-21 156.1 21.2 332 98-439 2-414 (436)
90 COG1148 HdrA Heterodisulfide r 99.7 1E-15 2.2E-20 151.3 20.2 198 229-435 298-540 (622)
91 PRK05329 anaerobic glycerol-3- 99.7 1.2E-14 2.6E-19 149.3 23.4 160 272-437 218-418 (422)
92 PTZ00188 adrenodoxin reductase 99.6 6E-14 1.3E-18 143.8 24.9 143 102-289 40-217 (506)
93 PF02852 Pyr_redox_dim: Pyridi 99.6 2.7E-15 5.8E-20 125.7 10.2 85 447-536 1-85 (110)
94 KOG1800 Ferredoxin/adrenodoxin 99.6 2.3E-13 5E-18 131.1 19.6 143 102-289 21-179 (468)
95 COG4529 Uncharacterized protei 99.5 5.1E-12 1.1E-16 127.3 25.8 328 102-436 2-459 (474)
96 COG2081 Predicted flavoprotein 99.4 4.6E-12 9.9E-17 124.5 14.1 142 100-244 2-170 (408)
97 COG0029 NadB Aspartate oxidase 99.4 6.9E-12 1.5E-16 126.0 12.8 312 103-439 9-397 (518)
98 PF00070 Pyr_redox: Pyridine n 99.3 1.9E-11 4.2E-16 95.9 11.2 77 271-348 1-80 (80)
99 PRK06854 adenylylsulfate reduc 99.2 1.1E-09 2.4E-14 119.1 21.7 35 100-134 10-46 (608)
100 PRK05945 sdhA succinate dehydr 99.2 1.3E-10 2.8E-15 126.0 14.4 55 383-437 348-411 (575)
101 PF03486 HI0933_like: HI0933-l 99.2 9E-11 1.9E-15 120.5 12.0 135 102-243 1-166 (409)
102 PRK09897 hypothetical protein; 99.2 6.6E-10 1.4E-14 117.6 18.5 182 102-291 2-213 (534)
103 PRK08401 L-aspartate oxidase; 99.2 1.8E-10 3.9E-15 121.7 14.2 142 102-244 2-176 (466)
104 TIGR00551 nadB L-aspartate oxi 99.2 4.1E-10 8.9E-15 119.8 15.4 38 101-139 2-40 (488)
105 PRK08275 putative oxidoreducta 99.2 8.8E-10 1.9E-14 119.0 17.8 45 386-436 356-401 (554)
106 PRK08205 sdhA succinate dehydr 99.2 6.8E-10 1.5E-14 120.5 16.9 54 384-437 354-416 (583)
107 PRK06069 sdhA succinate dehydr 99.2 1.4E-09 3E-14 118.1 18.8 54 384-437 350-412 (577)
108 PRK09231 fumarate reductase fl 99.2 6.8E-10 1.5E-14 120.2 16.3 40 100-139 3-45 (582)
109 PRK13800 putative oxidoreducta 99.1 1.2E-09 2.6E-14 124.1 18.8 66 366-437 337-407 (897)
110 PRK07843 3-ketosteroid-delta-1 99.1 4.8E-10 1E-14 121.0 14.8 105 265-373 156-273 (557)
111 PRK12842 putative succinate de 99.1 4.3E-10 9.2E-15 122.0 14.1 110 259-372 147-277 (574)
112 PLN02815 L-aspartate oxidase 99.1 1.1E-09 2.4E-14 118.2 16.6 40 97-137 25-65 (594)
113 PLN00128 Succinate dehydrogena 99.1 1.1E-09 2.4E-14 119.1 16.9 38 100-137 49-87 (635)
114 PRK07804 L-aspartate oxidase; 99.1 4.2E-09 9.1E-14 113.3 21.0 39 99-137 14-53 (541)
115 PRK06452 sdhA succinate dehydr 99.1 1.3E-09 2.8E-14 117.8 16.7 38 100-137 4-42 (566)
116 PRK09077 L-aspartate oxidase; 99.1 1.2E-09 2.7E-14 117.3 16.0 39 99-138 6-45 (536)
117 PRK06175 L-aspartate oxidase; 99.1 1E-09 2.2E-14 114.8 13.9 37 100-137 3-40 (433)
118 PRK06134 putative FAD-binding 99.1 1.3E-09 2.8E-14 118.2 14.7 244 99-371 10-279 (581)
119 COG0644 FixC Dehydrogenases (f 99.1 2.7E-09 5.8E-14 110.7 16.2 134 100-244 2-153 (396)
120 TIGR01812 sdhA_frdA_Gneg succi 99.1 3.4E-09 7.5E-14 115.1 17.5 52 384-437 340-400 (566)
121 TIGR01176 fum_red_Fp fumarate 99.1 3.9E-09 8.6E-14 114.0 17.7 37 101-137 3-42 (580)
122 PRK06263 sdhA succinate dehydr 99.1 1.3E-09 2.8E-14 117.5 13.9 38 100-138 6-45 (543)
123 PRK07803 sdhA succinate dehydr 99.1 1.1E-09 2.3E-14 119.6 12.8 36 100-135 7-42 (626)
124 PRK07395 L-aspartate oxidase; 99.1 1.4E-09 3.1E-14 116.8 13.6 40 99-139 7-47 (553)
125 PRK07057 sdhA succinate dehydr 99.1 3.7E-09 8.1E-14 114.7 16.5 35 99-133 10-44 (591)
126 PTZ00139 Succinate dehydrogena 99.0 2E-09 4.3E-14 117.2 14.1 39 100-138 28-67 (617)
127 TIGR02061 aprA adenosine phosp 99.0 1.2E-09 2.7E-14 117.8 12.4 33 103-135 1-37 (614)
128 PRK08641 sdhA succinate dehydr 99.0 2.1E-09 4.5E-14 116.6 13.7 34 101-134 3-36 (589)
129 PRK08071 L-aspartate oxidase; 99.0 6.7E-09 1.5E-13 110.9 15.8 38 101-139 3-41 (510)
130 PRK09078 sdhA succinate dehydr 99.0 3.7E-09 8E-14 114.9 13.6 34 100-133 11-44 (598)
131 PRK07573 sdhA succinate dehydr 99.0 3.4E-09 7.4E-14 115.8 12.2 37 100-136 34-71 (640)
132 PRK08626 fumarate reductase fl 99.0 4.4E-09 9.5E-14 115.1 12.5 34 100-133 4-37 (657)
133 PRK04176 ribulose-1,5-biphosph 98.9 8.1E-09 1.8E-13 99.9 12.4 130 100-243 24-173 (257)
134 PRK05192 tRNA uridine 5-carbox 98.9 1.2E-08 2.7E-13 108.2 14.3 133 100-242 3-156 (618)
135 TIGR00292 thiazole biosynthesi 98.9 2E-08 4.4E-13 96.8 13.6 39 100-138 20-59 (254)
136 TIGR01811 sdhA_Bsu succinate d 98.9 1.5E-08 3.2E-13 110.2 13.7 31 104-134 1-31 (603)
137 COG3075 GlpB Anaerobic glycero 98.8 1.3E-07 2.7E-12 90.4 16.0 122 311-438 259-416 (421)
138 TIGR02028 ChlP geranylgeranyl 98.8 2.6E-08 5.7E-13 103.3 12.4 141 102-246 1-163 (398)
139 PF01134 GIDA: Glucose inhibit 98.8 3.5E-08 7.6E-13 99.4 12.6 124 103-241 1-150 (392)
140 PF13454 NAD_binding_9: FAD-NA 98.8 4E-08 8.6E-13 87.7 11.7 131 105-241 1-155 (156)
141 PLN02463 lycopene beta cyclase 98.8 3.9E-08 8.4E-13 102.7 13.3 142 98-245 25-171 (447)
142 TIGR03378 glycerol3P_GlpB glyc 98.8 2.8E-06 6E-11 86.8 26.0 145 283-436 237-419 (419)
143 PRK07512 L-aspartate oxidase; 98.8 7.1E-08 1.5E-12 103.1 15.0 35 99-135 7-41 (513)
144 PRK10157 putative oxidoreducta 98.8 7.1E-08 1.5E-12 101.0 13.2 37 100-136 4-41 (428)
145 TIGR01790 carotene-cycl lycope 98.7 3.8E-08 8.2E-13 102.0 10.0 135 103-243 1-141 (388)
146 COG1053 SdhA Succinate dehydro 98.7 3.9E-07 8.4E-12 97.3 16.9 37 99-135 4-41 (562)
147 PLN00093 geranylgeranyl diphos 98.7 2.3E-07 4.9E-12 97.4 14.5 36 98-133 36-71 (450)
148 PRK10015 oxidoreductase; Provi 98.7 4.6E-08 1E-12 102.3 8.6 34 100-133 4-37 (429)
149 COG1635 THI4 Ribulose 1,5-bisp 98.7 1.5E-07 3.3E-12 85.0 10.3 40 101-140 30-71 (262)
150 TIGR02032 GG-red-SF geranylger 98.7 4.9E-08 1.1E-12 96.9 7.9 32 102-133 1-32 (295)
151 PRK12845 3-ketosteroid-delta-1 98.7 4.4E-07 9.6E-12 97.8 15.7 53 98-151 13-69 (564)
152 PF01946 Thi4: Thi4 family; PD 98.7 2.8E-07 6E-12 84.0 11.8 125 100-242 16-164 (230)
153 PRK06847 hypothetical protein; 98.6 1.9E-07 4.2E-12 96.3 11.7 33 101-133 4-36 (375)
154 PRK06834 hypothetical protein; 98.6 1.5E-07 3.2E-12 100.0 10.7 142 101-246 3-159 (488)
155 PLN02697 lycopene epsilon cycl 98.6 1.9E-07 4.2E-12 99.0 11.1 136 99-243 106-248 (529)
156 PLN02661 Putative thiazole syn 98.6 3E-07 6.6E-12 91.3 11.4 40 98-137 89-130 (357)
157 TIGR00136 gidA glucose-inhibit 98.6 3.2E-07 6.9E-12 97.4 12.1 133 102-243 1-154 (617)
158 PF12831 FAD_oxidored: FAD dep 98.6 6.3E-08 1.4E-12 101.3 6.6 133 103-240 1-147 (428)
159 TIGR02023 BchP-ChlP geranylger 98.6 1.7E-07 3.6E-12 97.1 9.7 32 102-133 1-32 (388)
160 PRK08773 2-octaprenyl-3-methyl 98.6 7E-07 1.5E-11 92.7 13.5 35 99-133 4-38 (392)
161 PRK07190 hypothetical protein; 98.6 2.5E-07 5.3E-12 98.3 9.7 32 101-132 5-36 (487)
162 PRK11728 hydroxyglutarate oxid 98.5 3.3E-06 7.2E-11 87.6 17.8 36 101-136 2-40 (393)
163 PRK07608 ubiquinone biosynthes 98.5 2.7E-07 5.7E-12 95.7 9.1 33 101-133 5-37 (388)
164 TIGR00275 flavoprotein, HI0933 98.5 3.8E-07 8.3E-12 94.6 9.9 131 105-243 1-160 (400)
165 PRK06481 fumarate reductase fl 98.5 9.5E-07 2.1E-11 94.5 12.8 54 384-437 440-501 (506)
166 PRK07494 2-octaprenyl-6-methox 98.5 7.5E-07 1.6E-11 92.3 11.6 36 98-133 4-39 (388)
167 PF05834 Lycopene_cycl: Lycope 98.5 2.9E-07 6.4E-12 94.6 8.1 134 103-244 1-143 (374)
168 PF00890 FAD_binding_2: FAD bi 98.5 1.8E-06 3.8E-11 90.5 13.9 39 103-141 1-40 (417)
169 PF13450 NAD_binding_8: NAD(P) 98.5 2.1E-07 4.5E-12 70.0 4.8 36 106-141 1-37 (68)
170 PRK05714 2-octaprenyl-3-methyl 98.5 1.1E-06 2.4E-11 91.6 11.9 34 101-134 2-35 (405)
171 TIGR01789 lycopene_cycl lycope 98.5 5.3E-07 1.2E-11 92.4 9.2 35 103-137 1-38 (370)
172 PRK06184 hypothetical protein; 98.5 5.6E-07 1.2E-11 96.5 9.7 32 101-132 3-34 (502)
173 PRK07121 hypothetical protein; 98.5 3.8E-06 8.3E-11 89.8 16.0 55 384-438 427-490 (492)
174 PRK07364 2-octaprenyl-6-methox 98.4 1E-06 2.2E-11 92.2 11.1 35 99-133 16-50 (415)
175 KOG2415 Electron transfer flav 98.4 2.8E-07 6E-12 90.6 6.0 48 98-145 73-127 (621)
176 PRK08274 tricarballylate dehyd 98.4 1.4E-06 3E-11 92.6 11.9 54 384-437 397-459 (466)
177 TIGR01292 TRX_reduct thioredox 98.4 2.3E-06 5E-11 85.2 12.8 96 271-374 2-116 (300)
178 PRK09754 phenylpropionate diox 98.4 8.5E-07 1.8E-11 92.1 9.9 94 102-245 145-243 (396)
179 PF01266 DAO: FAD dependent ox 98.4 3.4E-06 7.3E-11 86.0 14.0 35 103-137 1-35 (358)
180 TIGR03329 Phn_aa_oxid putative 98.4 5.9E-06 1.3E-10 87.6 16.1 47 99-145 22-72 (460)
181 PRK09126 hypothetical protein; 98.4 1.7E-06 3.6E-11 89.9 11.5 33 101-133 3-35 (392)
182 PRK08163 salicylate hydroxylas 98.4 1.2E-06 2.5E-11 91.2 10.3 32 101-132 4-35 (396)
183 PRK07251 pyridine nucleotide-d 98.4 6E-06 1.3E-10 87.0 15.4 94 102-246 158-256 (438)
184 PRK11259 solA N-methyltryptoph 98.4 5.1E-06 1.1E-10 85.7 14.3 36 101-136 3-38 (376)
185 PRK08020 ubiF 2-octaprenyl-3-m 98.4 4E-07 8.6E-12 94.5 5.9 34 100-133 4-37 (391)
186 TIGR01350 lipoamide_DH dihydro 98.4 6E-06 1.3E-10 87.6 14.8 94 102-246 171-272 (461)
187 PRK11445 putative oxidoreducta 98.4 2.7E-06 5.8E-11 86.9 11.4 31 102-133 2-32 (351)
188 PRK08849 2-octaprenyl-3-methyl 98.4 4.4E-07 9.5E-12 93.9 5.5 33 101-133 3-35 (384)
189 PRK05732 2-octaprenyl-6-methox 98.4 1.6E-06 3.4E-11 90.1 9.6 34 100-133 2-38 (395)
190 PRK12834 putative FAD-binding 98.4 5.2E-06 1.1E-10 89.9 13.9 53 385-437 484-548 (549)
191 PRK08013 oxidoreductase; Provi 98.3 3.2E-06 6.9E-11 88.0 11.6 32 101-132 3-34 (400)
192 PRK07333 2-octaprenyl-6-methox 98.3 1.7E-06 3.7E-11 90.1 9.3 32 102-133 2-35 (403)
193 PRK08244 hypothetical protein; 98.3 3E-06 6.5E-11 90.7 10.9 33 101-133 2-34 (493)
194 PRK08850 2-octaprenyl-6-methox 98.3 3.6E-06 7.9E-11 87.7 11.1 33 101-133 4-36 (405)
195 PRK07045 putative monooxygenas 98.3 1.8E-06 4E-11 89.4 8.7 33 100-132 4-36 (388)
196 PF01494 FAD_binding_3: FAD bi 98.3 1.2E-06 2.5E-11 89.4 7.2 31 102-132 2-32 (356)
197 PRK06185 hypothetical protein; 98.3 2.3E-06 5.1E-11 89.2 9.2 36 98-133 3-38 (407)
198 COG0654 UbiH 2-polyprenyl-6-me 98.3 2.5E-06 5.4E-11 88.3 9.0 33 101-133 2-34 (387)
199 PRK08958 sdhA succinate dehydr 98.3 4.7E-06 1E-10 90.6 11.5 37 101-137 7-44 (588)
200 PRK12409 D-amino acid dehydrog 98.3 6.1E-05 1.3E-09 78.7 19.5 44 102-145 2-48 (410)
201 TIGR01813 flavo_cyto_c flavocy 98.3 9.6E-06 2.1E-10 85.5 13.5 38 103-140 1-40 (439)
202 TIGR01984 UbiH 2-polyprenyl-6- 98.3 8.5E-06 1.9E-10 84.2 12.8 31 103-133 1-32 (382)
203 COG1249 Lpd Pyruvate/2-oxoglut 98.3 8.7E-06 1.9E-10 84.6 12.6 95 102-247 174-276 (454)
204 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 1.3E-06 2.8E-11 90.6 6.4 33 101-133 2-34 (390)
205 COG0445 GidA Flavin-dependent 98.2 1.7E-06 3.7E-11 88.5 6.8 134 101-242 4-157 (621)
206 TIGR03364 HpnW_proposed FAD de 98.2 2.1E-05 4.6E-10 80.7 14.9 34 102-135 1-34 (365)
207 PRK13512 coenzyme A disulfide 98.2 8.8E-06 1.9E-10 85.6 12.2 94 102-246 149-244 (438)
208 TIGR01377 soxA_mon sarcosine o 98.2 2.8E-05 6.1E-10 80.3 15.8 34 102-135 1-34 (380)
209 TIGR01988 Ubi-OHases Ubiquinon 98.2 4.5E-06 9.7E-11 86.4 9.7 31 103-133 1-31 (385)
210 PRK07236 hypothetical protein; 98.2 1.5E-05 3.2E-10 82.6 13.2 34 100-133 5-38 (386)
211 PTZ00306 NADH-dependent fumara 98.2 1.4E-05 3.1E-10 93.5 14.3 43 98-140 406-449 (1167)
212 PF00070 Pyr_redox: Pyridine n 98.2 1.5E-05 3.3E-10 62.2 10.1 31 103-133 1-31 (80)
213 PRK08243 4-hydroxybenzoate 3-m 98.2 2.4E-06 5.3E-11 88.6 7.0 33 101-133 2-34 (392)
214 PRK07588 hypothetical protein; 98.2 8.5E-06 1.9E-10 84.5 10.9 30 103-132 2-31 (391)
215 PRK06183 mhpA 3-(3-hydroxyphen 98.2 4.9E-06 1.1E-10 90.0 9.0 34 100-133 9-42 (538)
216 PRK08132 FAD-dependent oxidore 98.2 6.5E-06 1.4E-10 89.3 9.6 35 99-133 21-55 (547)
217 PRK06126 hypothetical protein; 98.2 3.9E-05 8.5E-10 83.2 15.6 35 99-133 5-39 (545)
218 PRK06617 2-octaprenyl-6-methox 98.2 5.4E-06 1.2E-10 85.4 8.4 32 102-133 2-33 (374)
219 PRK12844 3-ketosteroid-delta-1 98.2 1.1E-05 2.4E-10 87.2 11.0 54 100-153 5-62 (557)
220 TIGR01373 soxB sarcosine oxida 98.1 4.1E-05 8.9E-10 79.9 14.8 37 100-136 29-67 (407)
221 PRK01747 mnmC bifunctional tRN 98.1 2.6E-05 5.7E-10 86.4 13.9 33 101-133 260-292 (662)
222 COG1233 Phytoene dehydrogenase 98.1 2.2E-06 4.7E-11 91.2 5.2 40 101-140 3-43 (487)
223 PRK06996 hypothetical protein; 98.1 1.1E-05 2.3E-10 84.0 10.2 36 98-133 8-47 (398)
224 PRK06327 dihydrolipoamide dehy 98.1 3.4E-05 7.4E-10 82.1 13.9 94 102-246 184-287 (475)
225 PRK04965 NADH:flavorubredoxin 98.1 2E-05 4.4E-10 81.2 11.7 94 102-245 142-241 (377)
226 PRK12843 putative FAD-binding 98.1 0.00014 2.9E-09 79.3 18.1 44 99-142 14-58 (578)
227 TIGR03385 CoA_CoA_reduc CoA-di 98.1 2.8E-05 6E-10 81.7 12.3 95 102-246 138-236 (427)
228 PRK05976 dihydrolipoamide dehy 98.1 2.5E-05 5.4E-10 83.1 12.0 95 102-247 181-285 (472)
229 KOG0029 Amine oxidase [Seconda 98.1 3.8E-06 8.1E-11 88.5 5.4 42 99-140 13-55 (501)
230 COG0579 Predicted dehydrogenas 98.1 4E-05 8.7E-10 78.5 12.6 37 100-136 2-41 (429)
231 PRK06912 acoL dihydrolipoamide 98.1 3.9E-05 8.4E-10 81.3 12.7 94 102-246 171-271 (458)
232 PF04820 Trp_halogenase: Trypt 98.1 2.5E-05 5.3E-10 82.2 11.1 55 192-246 154-214 (454)
233 PRK06416 dihydrolipoamide dehy 98.1 3.3E-05 7.1E-10 82.0 12.1 94 102-246 173-275 (462)
234 PRK07208 hypothetical protein; 98.1 4.5E-06 9.7E-11 89.1 5.5 42 99-140 2-44 (479)
235 PRK06753 hypothetical protein; 98.1 1.7E-05 3.7E-10 81.7 9.6 31 103-133 2-32 (373)
236 TIGR01989 COQ6 Ubiquinone bios 98.0 9.1E-06 2E-10 85.5 7.6 31 102-132 1-35 (437)
237 PTZ00318 NADH dehydrogenase-li 98.0 4.1E-05 8.9E-10 80.2 12.4 92 102-244 174-281 (424)
238 PRK05249 soluble pyridine nucl 98.0 4.3E-05 9.4E-10 81.1 12.3 95 101-246 175-275 (461)
239 KOG2820 FAD-dependent oxidored 98.0 7.2E-05 1.6E-09 72.3 12.1 37 98-134 4-40 (399)
240 PLN02172 flavin-containing mon 98.0 0.00013 2.8E-09 76.8 15.4 102 269-373 10-178 (461)
241 PRK12839 hypothetical protein; 98.0 1.8E-05 3.9E-10 85.7 8.9 55 98-152 5-63 (572)
242 COG0446 HcaD Uncharacterized N 98.0 3.9E-05 8.4E-10 80.0 11.2 93 102-244 137-238 (415)
243 PRK06116 glutathione reductase 98.0 5.4E-05 1.2E-09 80.1 12.3 94 102-246 168-268 (450)
244 TIGR01424 gluta_reduc_2 glutat 98.0 5.5E-05 1.2E-09 79.8 12.2 94 102-246 167-266 (446)
245 TIGR02374 nitri_red_nirB nitri 98.0 2.1E-05 4.6E-10 88.5 9.4 95 102-246 141-241 (785)
246 TIGR00031 UDP-GALP_mutase UDP- 98.0 7.3E-06 1.6E-10 83.4 5.1 40 102-141 2-42 (377)
247 KOG1336 Monodehydroascorbate/f 98.0 3.1E-05 6.7E-10 78.4 9.3 97 102-247 214-317 (478)
248 TIGR01421 gluta_reduc_1 glutat 98.0 6.3E-05 1.4E-09 79.4 12.1 94 102-246 167-268 (450)
249 TIGR02053 MerA mercuric reduct 98.0 6.3E-05 1.4E-09 79.9 12.1 94 102-246 167-269 (463)
250 PRK06370 mercuric reductase; V 98.0 7.3E-05 1.6E-09 79.3 12.5 94 102-246 172-274 (463)
251 PRK06475 salicylate hydroxylas 98.0 4.3E-05 9.4E-10 79.5 10.5 31 102-132 3-33 (400)
252 PRK05868 hypothetical protein; 97.9 2.9E-05 6.2E-10 79.9 8.9 31 102-132 2-32 (372)
253 PRK07845 flavoprotein disulfid 97.9 7.5E-05 1.6E-09 79.2 12.3 94 102-246 178-277 (466)
254 PLN02507 glutathione reductase 97.9 7.7E-05 1.7E-09 79.7 12.3 94 102-246 204-303 (499)
255 KOG2311 NAD/FAD-utilizing prot 97.9 1.7E-05 3.6E-10 79.6 6.6 37 100-136 27-65 (679)
256 PRK00711 D-amino acid dehydrog 97.9 0.00014 3.1E-09 76.1 14.0 31 103-133 2-32 (416)
257 PRK08255 salicylyl-CoA 5-hydro 97.9 1.1E-05 2.4E-10 90.5 5.9 32 103-134 2-35 (765)
258 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 6.6E-05 1.4E-09 77.2 10.9 33 103-135 2-35 (433)
259 PRK12779 putative bifunctional 97.9 5E-05 1.1E-09 86.5 10.8 93 268-372 305-407 (944)
260 PRK14694 putative mercuric red 97.9 0.00011 2.3E-09 78.1 12.7 93 102-246 179-276 (468)
261 PRK07818 dihydrolipoamide dehy 97.9 9.2E-05 2E-09 78.7 12.2 94 102-246 173-276 (466)
262 PLN02576 protoporphyrinogen ox 97.9 1.3E-05 2.9E-10 85.9 5.8 41 101-141 12-54 (496)
263 PRK09564 coenzyme A disulfide 97.9 5.9E-05 1.3E-09 79.7 10.3 100 270-373 1-118 (444)
264 PTZ00052 thioredoxin reductase 97.9 9.9E-05 2.2E-09 78.9 12.0 94 102-246 183-281 (499)
265 COG2081 Predicted flavoprotein 97.9 0.00011 2.5E-09 73.0 11.4 92 270-368 4-165 (408)
266 PLN02268 probable polyamine ox 97.9 1.3E-05 2.8E-10 84.4 5.1 38 103-140 2-40 (435)
267 PRK15317 alkyl hydroperoxide r 97.9 0.00012 2.7E-09 78.7 12.6 97 269-372 211-324 (517)
268 TIGR03140 AhpF alkyl hydropero 97.9 0.00014 3E-09 78.2 12.8 99 268-373 211-326 (515)
269 COG3380 Predicted NAD/FAD-depe 97.9 1.7E-05 3.6E-10 74.3 4.9 39 102-140 2-41 (331)
270 TIGR01423 trypano_reduc trypan 97.9 0.00011 2.3E-09 78.2 11.6 94 102-246 188-291 (486)
271 PRK11883 protoporphyrinogen ox 97.9 1.4E-05 3.1E-10 84.5 5.0 38 103-140 2-42 (451)
272 TIGR03219 salicylate_mono sali 97.9 6.9E-05 1.5E-09 78.4 9.9 33 103-135 2-36 (414)
273 PRK06115 dihydrolipoamide dehy 97.8 0.00017 3.7E-09 76.5 12.9 94 102-246 175-279 (466)
274 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00016 3.5E-09 74.2 12.3 92 102-244 146-244 (364)
275 TIGR02485 CobZ_N-term precorri 97.8 9.8E-05 2.1E-09 77.7 10.8 54 385-438 367-429 (432)
276 PRK07846 mycothione reductase; 97.8 0.00013 2.8E-09 77.0 11.8 93 102-246 167-265 (451)
277 TIGR00562 proto_IX_ox protopor 97.8 1.6E-05 3.5E-10 84.4 5.0 40 102-141 3-47 (462)
278 PRK07233 hypothetical protein; 97.8 1.7E-05 3.7E-10 83.4 5.1 38 103-140 1-39 (434)
279 PLN02568 polyamine oxidase 97.8 2.1E-05 4.5E-10 84.4 5.5 42 99-140 3-50 (539)
280 PF13738 Pyr_redox_3: Pyridine 97.8 7.4E-05 1.6E-09 69.7 8.7 94 273-373 1-143 (203)
281 TIGR02733 desat_CrtD C-3',4' d 97.8 1.8E-05 4E-10 84.6 5.2 39 102-140 2-41 (492)
282 PRK13369 glycerol-3-phosphate 97.8 2.3E-05 4.9E-10 83.9 5.7 40 97-136 2-41 (502)
283 TIGR01438 TGR thioredoxin and 97.8 0.00018 4E-09 76.5 12.4 94 102-246 181-282 (484)
284 TIGR02730 carot_isom carotene 97.8 2E-05 4.4E-10 84.3 5.1 40 102-141 1-41 (493)
285 PRK12266 glpD glycerol-3-phosp 97.8 2.4E-05 5.1E-10 83.8 5.7 37 99-135 4-40 (508)
286 COG1252 Ndh NADH dehydrogenase 97.8 0.00014 3.1E-09 73.9 10.6 101 269-375 3-116 (405)
287 PRK04176 ribulose-1,5-biphosph 97.8 0.00078 1.7E-08 65.3 15.3 161 269-437 25-252 (257)
288 COG0562 Glf UDP-galactopyranos 97.8 2.8E-05 6E-10 74.6 5.0 40 102-141 2-42 (374)
289 PRK09853 putative selenate red 97.8 0.00011 2.4E-09 82.8 10.6 90 268-371 538-636 (1019)
290 TIGR01316 gltA glutamate synth 97.8 6.3E-05 1.4E-09 79.4 8.2 92 268-372 132-233 (449)
291 PRK06847 hypothetical protein; 97.8 0.00022 4.7E-09 73.5 12.0 98 269-373 4-166 (375)
292 PRK11749 dihydropyrimidine deh 97.7 8.8E-05 1.9E-09 78.5 8.8 90 267-369 138-236 (457)
293 PRK12770 putative glutamate sy 97.7 0.00012 2.6E-09 74.8 9.4 102 266-372 15-133 (352)
294 KOG2614 Kynurenine 3-monooxyge 97.7 0.00033 7.1E-09 70.0 12.0 31 102-132 3-33 (420)
295 PRK14727 putative mercuric red 97.7 0.0003 6.4E-09 75.0 12.5 93 102-246 189-286 (479)
296 TIGR02734 crtI_fam phytoene de 97.7 2.6E-05 5.7E-10 83.7 4.5 37 104-140 1-38 (502)
297 PRK13748 putative mercuric red 97.7 0.00028 6.1E-09 76.9 12.6 93 102-246 271-368 (561)
298 TIGR03452 mycothione_red mycot 97.7 0.00026 5.6E-09 74.8 11.8 93 102-246 170-268 (452)
299 COG3349 Uncharacterized conser 97.7 3.3E-05 7.2E-10 79.5 4.7 40 103-142 2-42 (485)
300 PRK14989 nitrite reductase sub 97.7 0.00016 3.4E-09 81.7 10.4 98 270-374 4-117 (847)
301 PRK08010 pyridine nucleotide-d 97.7 0.00032 6.9E-09 74.0 12.2 93 102-246 159-257 (441)
302 TIGR02731 phytoene_desat phyto 97.7 3.7E-05 7.9E-10 81.5 5.1 38 103-140 1-39 (453)
303 COG0578 GlpA Glycerol-3-phosph 97.7 0.00067 1.5E-08 71.2 14.1 40 100-139 11-51 (532)
304 PTZ00058 glutathione reductase 97.7 0.00034 7.4E-09 75.3 12.4 94 102-246 238-339 (561)
305 PRK06292 dihydrolipoamide dehy 97.7 0.00037 8.1E-09 73.9 12.6 93 102-246 170-271 (460)
306 PRK12837 3-ketosteroid-delta-1 97.7 4.7E-05 1E-09 81.7 5.7 54 385-438 449-511 (513)
307 TIGR00292 thiazole biosynthesi 97.7 0.00069 1.5E-08 65.4 13.2 166 269-437 21-251 (254)
308 PRK06467 dihydrolipoamide dehy 97.7 0.00033 7.1E-09 74.5 11.9 31 102-132 175-205 (471)
309 TIGR01318 gltD_gamma_fam gluta 97.7 0.00013 2.8E-09 77.3 8.5 92 268-372 140-240 (467)
310 PRK12416 protoporphyrinogen ox 97.6 4.6E-05 1E-09 80.9 4.8 40 102-141 2-48 (463)
311 PLN02676 polyamine oxidase 97.6 5.6E-05 1.2E-09 80.3 5.4 42 100-141 25-68 (487)
312 PRK01438 murD UDP-N-acetylmura 97.6 0.00038 8.2E-09 74.3 11.5 31 102-132 17-47 (480)
313 PLN02852 ferredoxin-NADP+ redu 97.6 0.00018 4E-09 75.7 8.9 91 268-371 25-127 (491)
314 PLN02529 lysine-specific histo 97.6 6.4E-05 1.4E-09 82.7 5.6 41 100-140 159-200 (738)
315 COG1231 Monoamine oxidase [Ami 97.6 6.2E-05 1.3E-09 76.1 5.0 42 100-141 6-48 (450)
316 PLN02546 glutathione reductase 97.6 0.00045 9.8E-09 74.4 11.8 94 102-246 253-353 (558)
317 COG2509 Uncharacterized FAD-de 97.6 0.00051 1.1E-08 69.3 10.8 78 288-372 150-232 (486)
318 PTZ00363 rab-GDP dissociation 97.6 6.8E-05 1.5E-09 78.2 4.9 42 99-140 2-44 (443)
319 PF03486 HI0933_like: HI0933-l 97.6 0.00022 4.8E-09 73.6 8.5 93 271-370 2-166 (409)
320 KOG0399 Glutamate synthase [Am 97.6 0.0018 4E-08 71.5 15.4 203 269-488 1785-2007(2142)
321 PRK12835 3-ketosteroid-delta-1 97.6 8.1E-05 1.8E-09 80.9 5.3 54 385-438 507-569 (584)
322 PRK12831 putative oxidoreducta 97.6 0.00023 5.1E-09 75.3 8.6 95 267-372 138-243 (464)
323 PRK07236 hypothetical protein; 97.6 0.00042 9.1E-09 71.8 10.3 98 269-372 6-156 (386)
324 COG0665 DadA Glycine/D-amino a 97.6 8.9E-05 1.9E-09 76.7 5.3 37 100-136 3-39 (387)
325 PRK11101 glpA sn-glycerol-3-ph 97.5 9.8E-05 2.1E-09 79.8 5.6 36 100-135 5-40 (546)
326 PRK10262 thioredoxin reductase 97.5 0.0011 2.3E-08 66.9 12.8 98 268-373 5-120 (321)
327 COG1232 HemY Protoporphyrinoge 97.5 8.7E-05 1.9E-09 76.6 4.7 38 103-140 2-42 (444)
328 KOG2853 Possible oxidoreductas 97.5 0.00065 1.4E-08 65.7 10.2 44 99-142 84-141 (509)
329 PRK12778 putative bifunctional 97.5 0.0003 6.6E-09 79.1 9.2 93 268-372 430-532 (752)
330 PLN02985 squalene monooxygenas 97.5 0.00011 2.3E-09 78.7 5.1 35 99-133 41-75 (514)
331 PRK06567 putative bifunctional 97.5 0.00036 7.7E-09 77.9 9.1 35 267-301 381-415 (1028)
332 TIGR02032 GG-red-SF geranylger 97.5 0.00096 2.1E-08 66.0 11.4 95 271-371 2-149 (295)
333 PRK13977 myosin-cross-reactive 97.5 0.00017 3.7E-09 76.4 6.1 40 101-140 22-66 (576)
334 PRK13339 malate:quinone oxidor 97.5 0.00017 3.6E-09 76.2 5.9 46 99-144 4-56 (497)
335 KOG0685 Flavin-containing amin 97.5 0.00014 3E-09 73.7 4.9 41 100-140 20-62 (498)
336 PRK12775 putative trifunctiona 97.5 0.00032 7E-09 80.7 8.5 93 269-372 430-532 (1006)
337 TIGR01317 GOGAT_sm_gam glutama 97.4 0.00045 9.8E-09 73.5 9.1 91 268-371 142-242 (485)
338 PRK01438 murD UDP-N-acetylmura 97.4 0.00043 9.3E-09 73.9 8.9 81 268-375 15-95 (480)
339 PF01134 GIDA: Glucose inhibit 97.4 0.0014 3E-08 66.6 11.9 92 271-368 1-150 (392)
340 PLN02927 antheraxanthin epoxid 97.4 0.00017 3.6E-09 78.5 5.6 36 98-133 78-113 (668)
341 TIGR02732 zeta_caro_desat caro 97.4 0.00014 3E-09 77.3 5.0 38 103-140 1-39 (474)
342 PLN02487 zeta-carotene desatur 97.4 0.00023 5E-09 76.5 6.7 40 101-140 75-115 (569)
343 PRK07538 hypothetical protein; 97.4 0.00012 2.7E-09 76.5 4.5 31 103-133 2-32 (413)
344 PLN02464 glycerol-3-phosphate 97.4 0.00015 3.3E-09 79.4 5.4 36 100-135 70-105 (627)
345 TIGR03315 Se_ygfK putative sel 97.4 0.00046 9.9E-09 78.3 9.2 89 269-371 537-634 (1012)
346 PLN02328 lysine-specific histo 97.4 0.00017 3.6E-09 79.9 5.6 41 100-140 237-278 (808)
347 PTZ00367 squalene epoxidase; P 97.4 0.00015 3.2E-09 78.2 5.0 34 100-133 32-65 (567)
348 TIGR03143 AhpF_homolog putativ 97.4 0.0013 2.8E-08 71.3 12.4 94 270-373 5-117 (555)
349 PRK08294 phenol 2-monooxygenas 97.4 0.00016 3.4E-09 79.4 5.2 34 99-132 30-64 (634)
350 PRK12809 putative oxidoreducta 97.4 0.00036 7.7E-09 77.0 7.9 91 268-371 309-408 (639)
351 PRK05335 tRNA (uracil-5-)-meth 97.4 0.00017 3.6E-09 73.8 4.7 31 102-132 3-33 (436)
352 PTZ00153 lipoamide dehydrogena 97.4 0.0013 2.8E-08 72.0 11.9 31 102-132 313-343 (659)
353 PRK12810 gltD glutamate syntha 97.4 0.00065 1.4E-08 72.2 9.3 89 268-369 142-239 (471)
354 PTZ00188 adrenodoxin reductase 97.4 0.0007 1.5E-08 70.5 8.8 92 267-371 37-139 (506)
355 PRK06834 hypothetical protein; 97.3 0.0025 5.5E-08 67.9 13.3 97 270-373 4-159 (488)
356 PRK12814 putative NADPH-depend 97.3 0.00046 1E-08 76.2 7.7 91 268-371 192-291 (652)
357 KOG1335 Dihydrolipoamide dehyd 97.3 0.0028 6.1E-08 62.5 11.8 139 101-292 211-367 (506)
358 PRK12769 putative oxidoreducta 97.3 0.00059 1.3E-08 75.6 8.2 90 268-370 326-424 (654)
359 PLN02612 phytoene desaturase 97.3 0.0003 6.6E-09 76.3 5.8 41 100-140 92-133 (567)
360 TIGR02462 pyranose_ox pyranose 97.3 0.00026 5.7E-09 75.4 5.0 39 102-140 1-40 (544)
361 PF00732 GMC_oxred_N: GMC oxid 97.3 0.00022 4.7E-09 70.9 3.9 32 102-133 1-33 (296)
362 PLN02661 Putative thiazole syn 97.2 0.0074 1.6E-07 60.4 14.1 167 269-437 92-325 (357)
363 PF00743 FMO-like: Flavin-bind 97.2 0.0015 3.4E-08 69.9 10.1 100 270-373 2-155 (531)
364 PRK08163 salicylate hydroxylas 97.2 0.0027 5.9E-08 65.9 11.7 35 269-303 4-38 (396)
365 KOG1399 Flavin-containing mono 97.2 0.0072 1.6E-07 62.9 14.2 138 269-414 6-195 (448)
366 PLN03000 amine oxidase 97.2 0.00042 9.1E-09 76.9 5.3 41 100-140 183-224 (881)
367 PLN02976 amine oxidase 97.2 0.00048 1E-08 79.2 5.4 43 99-141 691-734 (1713)
368 PTZ00383 malate:quinone oxidor 97.1 0.00071 1.5E-08 71.7 6.3 37 97-133 41-79 (497)
369 PF01494 FAD_binding_3: FAD bi 97.1 0.0044 9.5E-08 62.9 12.0 100 271-372 3-174 (356)
370 COG3573 Predicted oxidoreducta 97.1 0.0017 3.6E-08 62.8 7.9 41 100-140 4-47 (552)
371 PLN02463 lycopene beta cyclase 97.1 0.0036 7.8E-08 65.7 11.2 94 270-371 29-170 (447)
372 PF07992 Pyr_redox_2: Pyridine 97.1 0.00055 1.2E-08 63.6 4.6 137 271-417 1-199 (201)
373 TIGR01320 mal_quin_oxido malat 97.1 0.00046 1E-08 73.2 4.6 35 102-136 1-38 (483)
374 COG0493 GltD NADPH-dependent g 97.1 0.00083 1.8E-08 70.1 6.3 92 268-372 122-223 (457)
375 COG2072 TrkA Predicted flavopr 97.1 0.0087 1.9E-07 62.9 13.9 134 270-415 9-185 (443)
376 COG1635 THI4 Ribulose 1,5-bisp 97.1 0.01 2.2E-07 54.4 12.2 36 269-304 30-65 (262)
377 PRK02106 choline dehydrogenase 97.1 0.00056 1.2E-08 74.4 4.9 35 99-133 3-38 (560)
378 PRK07364 2-octaprenyl-6-methox 97.1 0.0063 1.4E-07 63.6 12.6 35 269-303 18-52 (415)
379 PRK09126 hypothetical protein; 97.1 0.0063 1.4E-07 63.1 12.5 34 270-303 4-37 (392)
380 PRK05257 malate:quinone oxidor 97.1 0.00059 1.3E-08 72.5 4.7 34 100-133 4-39 (494)
381 PRK08132 FAD-dependent oxidore 97.1 0.0072 1.6E-07 65.7 13.2 101 269-372 23-187 (547)
382 PRK08773 2-octaprenyl-3-methyl 97.0 0.0057 1.2E-07 63.4 11.9 34 269-302 6-39 (392)
383 PRK05868 hypothetical protein; 97.0 0.0051 1.1E-07 63.3 11.4 35 270-304 2-36 (372)
384 KOG2404 Fumarate reductase, fl 97.0 0.0031 6.7E-08 60.7 8.6 38 103-140 11-49 (477)
385 PRK06183 mhpA 3-(3-hydroxyphen 97.0 0.0068 1.5E-07 65.7 12.5 101 270-372 11-176 (538)
386 COG2907 Predicted NAD/FAD-bind 96.9 0.0008 1.7E-08 65.4 4.1 39 101-140 8-47 (447)
387 PRK07333 2-octaprenyl-6-methox 96.9 0.008 1.7E-07 62.6 12.1 95 271-372 3-169 (403)
388 KOG2495 NADH-dehydrogenase (ub 96.9 0.0069 1.5E-07 60.8 10.6 107 269-375 55-175 (491)
389 TIGR01372 soxA sarcosine oxida 96.9 0.009 1.9E-07 69.3 13.4 105 269-373 163-289 (985)
390 PRK06184 hypothetical protein; 96.9 0.0077 1.7E-07 64.7 12.1 97 270-370 4-168 (502)
391 COG0492 TrxB Thioredoxin reduc 96.9 0.011 2.3E-07 58.7 12.0 98 270-375 4-120 (305)
392 COG0654 UbiH 2-polyprenyl-6-me 96.9 0.0098 2.1E-07 61.6 12.4 97 270-372 3-164 (387)
393 PRK08244 hypothetical protein; 96.9 0.0075 1.6E-07 64.6 11.9 98 270-371 3-160 (493)
394 PRK13984 putative oxidoreducta 96.9 0.0025 5.3E-08 70.1 8.3 90 268-370 282-380 (604)
395 PRK05714 2-octaprenyl-3-methyl 96.9 0.0054 1.2E-07 63.9 10.4 32 271-302 4-35 (405)
396 COG1251 NirB NAD(P)H-nitrite r 96.9 0.0018 4E-08 69.2 6.7 94 103-245 147-245 (793)
397 PF06039 Mqo: Malate:quinone o 96.9 0.021 4.5E-07 58.5 13.9 44 100-143 2-52 (488)
398 KOG1298 Squalene monooxygenase 96.9 0.0011 2.5E-08 65.2 4.6 35 99-133 43-77 (509)
399 PRK07608 ubiquinone biosynthes 96.9 0.01 2.2E-07 61.4 12.1 34 270-303 6-39 (388)
400 PRK07045 putative monooxygenas 96.9 0.013 2.7E-07 60.8 12.6 35 270-304 6-40 (388)
401 KOG4254 Phytoene desaturase [C 96.8 0.0014 3E-08 66.0 4.9 51 100-150 13-64 (561)
402 PRK14106 murD UDP-N-acetylmura 96.8 0.011 2.4E-07 62.6 12.2 33 101-133 5-37 (450)
403 PRK07588 hypothetical protein; 96.8 0.014 3.1E-07 60.5 12.8 33 271-303 2-34 (391)
404 PRK06753 hypothetical protein; 96.8 0.0069 1.5E-07 62.3 10.2 34 271-304 2-35 (373)
405 KOG2852 Possible oxidoreductas 96.8 0.024 5.1E-07 54.1 12.4 34 101-134 10-49 (380)
406 PRK08849 2-octaprenyl-3-methyl 96.8 0.0092 2E-07 61.7 11.0 32 271-302 5-36 (384)
407 PF01946 Thi4: Thi4 family; PD 96.8 0.01 2.2E-07 54.7 9.7 103 269-373 17-168 (230)
408 KOG1276 Protoporphyrinogen oxi 96.8 0.0014 3.1E-08 65.6 4.4 38 102-139 12-52 (491)
409 PRK06475 salicylate hydroxylas 96.8 0.017 3.8E-07 60.0 12.8 34 270-303 3-36 (400)
410 PRK05192 tRNA uridine 5-carbox 96.8 0.013 2.8E-07 63.0 11.7 31 271-301 6-36 (618)
411 PRK12771 putative glutamate sy 96.7 0.005 1.1E-07 67.1 8.7 91 268-371 136-235 (564)
412 TIGR01984 UbiH 2-polyprenyl-6- 96.7 0.016 3.6E-07 59.7 12.2 33 271-303 1-34 (382)
413 PRK07190 hypothetical protein; 96.7 0.016 3.5E-07 61.7 12.2 33 270-302 6-38 (487)
414 KOG2960 Protein involved in th 96.7 0.00049 1.1E-08 62.1 0.5 40 101-140 76-119 (328)
415 PRK10157 putative oxidoreducta 96.7 0.017 3.6E-07 60.7 11.8 33 270-302 6-38 (428)
416 TIGR01790 carotene-cycl lycope 96.6 0.016 3.5E-07 59.9 11.3 33 271-303 1-33 (388)
417 PRK08013 oxidoreductase; Provi 96.6 0.023 4.9E-07 59.1 12.3 34 270-303 4-37 (400)
418 TIGR00137 gid_trmFO tRNA:m(5)U 96.6 0.0055 1.2E-07 63.2 7.3 35 271-305 2-36 (433)
419 TIGR01988 Ubi-OHases Ubiquinon 96.6 0.024 5.2E-07 58.5 12.2 33 271-303 1-33 (385)
420 PRK08850 2-octaprenyl-6-methox 96.6 0.021 4.5E-07 59.5 11.7 32 270-301 5-36 (405)
421 PRK02705 murD UDP-N-acetylmura 96.5 0.012 2.6E-07 62.4 9.7 31 103-133 2-32 (459)
422 PRK06126 hypothetical protein; 96.5 0.029 6.2E-07 61.0 12.7 34 269-302 7-40 (545)
423 PRK08020 ubiF 2-octaprenyl-3-m 96.5 0.029 6.3E-07 58.1 12.3 33 270-302 6-38 (391)
424 PRK06617 2-octaprenyl-6-methox 96.5 0.032 7E-07 57.4 12.4 31 271-301 3-33 (374)
425 COG2303 BetA Choline dehydroge 96.4 0.0029 6.3E-08 68.2 4.4 36 98-133 4-39 (542)
426 KOG2844 Dimethylglycine dehydr 96.4 0.018 3.9E-07 60.9 9.8 43 102-144 40-85 (856)
427 PRK05732 2-octaprenyl-6-methox 96.4 0.039 8.5E-07 57.2 12.6 32 270-301 4-38 (395)
428 PF13450 NAD_binding_8: NAD(P) 96.4 0.0057 1.2E-07 45.8 4.5 32 274-305 1-32 (68)
429 PRK07494 2-octaprenyl-6-methox 96.4 0.03 6.6E-07 57.9 11.6 34 270-303 8-41 (388)
430 TIGR01789 lycopene_cycl lycope 96.3 0.016 3.5E-07 59.5 9.1 33 272-304 2-36 (370)
431 TIGR03862 flavo_PP4765 unchara 96.3 0.04 8.8E-07 56.1 11.7 113 124-243 1-141 (376)
432 TIGR00136 gidA glucose-inhibit 96.3 0.046 1E-06 58.8 12.6 94 271-370 2-154 (617)
433 PLN02785 Protein HOTHEAD 96.2 0.0054 1.2E-07 66.7 5.2 33 100-133 54-86 (587)
434 TIGR02023 BchP-ChlP geranylger 96.2 0.067 1.4E-06 55.4 13.2 31 271-301 2-32 (388)
435 PF06100 Strep_67kDa_ant: Stre 96.2 0.0032 6.9E-08 65.0 3.1 39 102-140 3-46 (500)
436 TIGR03219 salicylate_mono sali 96.2 0.05 1.1E-06 56.9 12.0 34 271-304 2-36 (414)
437 TIGR01810 betA choline dehydro 96.2 0.0041 8.9E-08 67.2 3.8 31 103-133 1-32 (532)
438 PRK08243 4-hydroxybenzoate 3-m 96.1 0.058 1.3E-06 55.9 12.1 99 270-373 3-166 (392)
439 PRK09897 hypothetical protein; 96.1 0.067 1.5E-06 57.3 12.6 34 270-303 2-37 (534)
440 PLN02697 lycopene epsilon cycl 96.1 0.048 1E-06 58.4 11.5 32 270-301 109-140 (529)
441 TIGR00275 flavoprotein, HI0933 96.1 0.036 7.9E-07 57.5 10.1 31 273-303 1-31 (400)
442 COG0644 FixC Dehydrogenases (f 96.1 0.055 1.2E-06 56.2 11.4 93 271-369 5-151 (396)
443 PRK07538 hypothetical protein; 96.0 0.079 1.7E-06 55.4 12.5 33 271-303 2-34 (413)
444 PRK10015 oxidoreductase; Provi 95.9 0.078 1.7E-06 55.6 12.0 33 270-302 6-38 (429)
445 KOG0042 Glycerol-3-phosphate d 95.9 0.0035 7.7E-08 64.5 1.8 39 98-136 64-102 (680)
446 COG0445 GidA Flavin-dependent 95.9 0.027 5.8E-07 58.6 7.9 92 271-368 6-156 (621)
447 PF13434 K_oxygenase: L-lysine 95.9 0.042 9E-07 55.6 9.4 34 100-133 189-224 (341)
448 PF12831 FAD_oxidored: FAD dep 95.9 0.0088 1.9E-07 62.7 4.7 93 272-368 2-148 (428)
449 KOG0404 Thioredoxin reductase 95.9 0.062 1.3E-06 49.3 9.1 96 269-372 8-126 (322)
450 COG1148 HdrA Heterodisulfide r 95.8 0.027 5.9E-07 57.5 7.5 66 269-335 124-202 (622)
451 TIGR02028 ChlP geranylgeranyl 95.8 0.12 2.7E-06 53.6 12.8 32 271-302 2-33 (398)
452 KOG1346 Programmed cell death 95.8 0.063 1.4E-06 53.7 9.7 95 101-245 347-451 (659)
453 PRK06185 hypothetical protein; 95.8 0.11 2.4E-06 54.0 12.4 33 270-302 7-39 (407)
454 PRK06996 hypothetical protein; 95.7 0.1 2.3E-06 54.1 11.9 96 270-369 12-173 (398)
455 TIGR02360 pbenz_hydroxyl 4-hyd 95.7 0.12 2.6E-06 53.5 12.2 35 269-303 2-36 (390)
456 PF05834 Lycopene_cycl: Lycope 95.6 0.14 3E-06 52.7 12.0 33 272-304 2-36 (374)
457 TIGR01989 COQ6 Ubiquinone bios 95.4 0.16 3.5E-06 53.5 12.1 31 271-301 2-36 (437)
458 PLN02985 squalene monooxygenas 95.4 0.22 4.8E-06 53.4 13.1 33 270-302 44-76 (514)
459 COG1004 Ugd Predicted UDP-gluc 95.4 0.025 5.3E-07 56.7 5.3 31 103-133 2-32 (414)
460 KOG2665 Predicted FAD-dependen 95.4 0.014 3E-07 56.3 3.3 34 100-133 47-82 (453)
461 TIGR01470 cysG_Nterm siroheme 95.3 0.028 6E-07 52.4 5.3 31 102-132 10-40 (205)
462 KOG1238 Glucose dehydrogenase/ 95.3 0.019 4.2E-07 61.0 4.6 35 98-132 54-89 (623)
463 PRK11445 putative oxidoreducta 95.3 0.19 4.1E-06 51.2 11.7 31 271-302 3-33 (351)
464 PF13454 NAD_binding_9: FAD-NA 95.3 0.17 3.8E-06 44.9 10.0 29 273-301 1-34 (156)
465 PRK05335 tRNA (uracil-5-)-meth 95.1 0.027 5.8E-07 58.0 4.9 35 270-304 3-37 (436)
466 PRK06481 fumarate reductase fl 95.0 0.23 5E-06 53.3 11.9 34 270-303 62-95 (506)
467 PF02558 ApbA: Ketopantoate re 94.9 0.11 2.4E-06 45.7 7.7 29 104-132 1-29 (151)
468 PF04820 Trp_halogenase: Trypt 94.8 0.16 3.4E-06 53.7 9.8 31 271-301 1-34 (454)
469 COG3634 AhpF Alkyl hydroperoxi 94.4 0.1 2.2E-06 51.2 6.5 95 269-370 211-325 (520)
470 PRK01710 murD UDP-N-acetylmura 94.4 0.33 7.1E-06 51.5 11.1 31 102-132 15-45 (458)
471 PF00996 GDI: GDP dissociation 94.4 0.059 1.3E-06 55.9 5.2 42 99-140 2-44 (438)
472 KOG0029 Amine oxidase [Seconda 94.3 0.052 1.1E-06 57.6 4.9 40 268-307 14-53 (501)
473 TIGR01813 flavo_cyto_c flavocy 94.3 0.43 9.4E-06 50.2 11.7 32 272-303 2-34 (439)
474 KOG2311 NAD/FAD-utilizing prot 94.3 0.21 4.6E-06 51.1 8.6 31 270-300 29-59 (679)
475 KOG3855 Monooxygenase involved 94.2 0.043 9.3E-07 55.0 3.5 34 100-133 35-72 (481)
476 KOG1800 Ferredoxin/adrenodoxin 94.1 0.21 4.6E-06 49.7 7.9 87 271-370 22-120 (468)
477 PRK14106 murD UDP-N-acetylmura 94.0 0.18 3.8E-06 53.4 8.2 81 268-374 4-84 (450)
478 PRK02472 murD UDP-N-acetylmura 94.0 0.29 6.3E-06 51.7 9.7 31 102-132 6-36 (447)
479 KOG2755 Oxidoreductase [Genera 93.9 0.11 2.4E-06 48.9 5.5 93 271-373 1-107 (334)
480 PF01210 NAD_Gly3P_dh_N: NAD-d 93.8 0.072 1.6E-06 47.4 4.1 31 103-133 1-31 (157)
481 COG3349 Uncharacterized conser 93.8 0.076 1.7E-06 55.2 4.6 37 270-306 1-37 (485)
482 PRK11883 protoporphyrinogen ox 93.6 0.083 1.8E-06 55.8 4.8 36 270-305 1-38 (451)
483 KOG0405 Pyridine nucleotide-di 93.6 0.23 5E-06 48.8 7.2 97 101-247 189-291 (478)
484 COG1206 Gid NAD(FAD)-utilizing 93.6 0.073 1.6E-06 51.8 3.8 31 102-132 4-34 (439)
485 PF13241 NAD_binding_7: Putati 93.5 0.062 1.3E-06 44.0 2.8 33 101-133 7-39 (103)
486 COG0569 TrkA K+ transport syst 93.5 0.093 2E-06 49.7 4.4 31 103-133 2-32 (225)
487 PF01593 Amino_oxidase: Flavin 93.4 0.073 1.6E-06 55.4 4.0 30 111-140 1-31 (450)
488 PRK08274 tricarballylate dehyd 93.4 0.095 2.1E-06 55.7 4.8 40 100-139 3-45 (466)
489 PRK12409 D-amino acid dehydrog 93.4 0.1 2.2E-06 54.5 4.9 33 270-302 2-34 (410)
490 PLN02268 probable polyamine ox 93.2 0.11 2.4E-06 54.7 4.9 37 270-306 1-37 (435)
491 PRK07233 hypothetical protein; 93.2 0.1 2.2E-06 54.7 4.6 35 271-305 1-35 (434)
492 KOG1298 Squalene monooxygenase 93.1 0.71 1.5E-05 46.2 9.7 31 271-301 47-77 (509)
493 PF13241 NAD_binding_7: Putati 93.1 0.09 2E-06 43.0 3.2 35 267-301 5-39 (103)
494 TIGR01470 cysG_Nterm siroheme 93.1 0.39 8.5E-06 44.7 7.7 35 267-301 7-41 (205)
495 COG1004 Ugd Predicted UDP-gluc 93.0 0.26 5.7E-06 49.6 6.7 50 271-320 2-59 (414)
496 PF01266 DAO: FAD dependent ox 92.9 0.14 3E-06 51.9 4.9 31 271-301 1-31 (358)
497 PRK06719 precorrin-2 dehydroge 92.8 0.17 3.7E-06 44.9 4.6 32 101-132 13-44 (157)
498 COG4529 Uncharacterized protei 92.7 1.5 3.1E-05 45.6 11.7 35 270-304 2-39 (474)
499 PRK12837 3-ketosteroid-delta-1 92.7 0.14 3E-06 55.1 4.8 41 100-141 6-47 (513)
500 PRK06719 precorrin-2 dehydroge 92.7 0.2 4.4E-06 44.4 5.0 33 267-299 11-43 (157)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=4.5e-76 Score=602.49 Aligned_cols=418 Identities=38% Similarity=0.603 Sum_probs=381.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
+.+||+||||+||||..||.+++++|.+|++||+. .+||+|+|+||+|+|.+++.+..++....... .+|+......
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~--~~Gi~~~~~~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAK--EYGISAEVPK 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhccc--ccceecCCCC
Confidence 35699999999999999999999999999999996 89999999999999999999988766543222 6888877778
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCc--ceEEEeCeEEEeCCCCCCCCCCccCCCce
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT--DNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~--g~~i~~d~lVlAtG~~p~~p~~~~~~~~~ 255 (551)
+++.++.++.+.....+.......++..+|+++.|++.+.++++|.+.+ .++++++++|||||++|..|+++++++..
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~ 159 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGAR 159 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCe
Confidence 9999999999998788888888888999999999999999999999876 47899999999999999999999999998
Q ss_pred eecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE
Q 008850 256 VITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT 335 (551)
Q Consensus 256 v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~ 335 (551)
++++++.+.+.+.|++++|||||++|+|+|..++++|.+||++++.++++|.+|+++++.+.+.|++ .|+++++++.+.
T Consensus 160 ~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~-~gv~i~~~~~v~ 238 (454)
T COG1249 160 ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEK-GGVKILLNTKVT 238 (454)
T ss_pred EEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHh-CCeEEEccceEE
Confidence 9999887777799999999999999999999999999999999999999999999999999999997 899999999887
Q ss_pred ---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEe
Q 008850 336 ---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCI 411 (551)
Q Consensus 336 ---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~ 411 (551)
..++.+.++++++.. .++++|.|++|+|++||++.|++++.|++. ++|+|.||+.++ |++|||||+
T Consensus 239 ~~~~~~~~v~v~~~~g~~----~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~------Tnvp~IyA~ 308 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEG----GTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMT------TNVPGIYAI 308 (454)
T ss_pred EEEecCCeEEEEEecCCC----CEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccc------cCCCCEEEe
Confidence 333337788877621 278999999999999999999999999998 669999996666 889999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHcC-CCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchh
Q 008850 412 GDANGKMMLAHAASAQGISVVEQVTG-RDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 490 (551)
Q Consensus 412 GD~~~~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 490 (551)
|||++.+++++.|.+||++|++||+| .....+|..+|+++|++||+++||+||+||+++ +++|++.+.+|..+.|
T Consensus 309 GDV~~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~----g~~~~~~~~~f~~~~r 384 (454)
T COG1249 309 GDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEA----GIDYKVGKFPFAANGR 384 (454)
T ss_pred eccCCCcccHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhc----CCceEEEEeecccchh
Confidence 99999999999999999999999997 555678999999999999999999999999986 8899999999999999
Q ss_pred hhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHh
Q 008850 491 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 534 (551)
Q Consensus 491 ~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~ 534 (551)
+...++++||+||++|++ ++++||+|++|+.|.|+|+.++..-
T Consensus 385 a~~~~~~~G~~Klv~d~~-t~~IlGahivg~~A~ElI~~~~~a~ 427 (454)
T COG1249 385 AITMGETDGFVKLVVDKE-TGRILGAHIVGPGASELINEIALAI 427 (454)
T ss_pred HHhccCCceEEEEEEECC-CCeEEEEEEECCCHHHHHHHHHHHH
Confidence 999999999999999998 9999999999999999999996543
No 2
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.3e-72 Score=531.30 Aligned_cols=419 Identities=41% Similarity=0.648 Sum_probs=390.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
.+|||+|||+||+|..||++++++|++.++||+ ..+||+|+|.||+|||.+++.+..++..+.. .+...|+......+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~-~~~~rGi~vs~~~~ 116 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHE-DFASRGIDVSSVSL 116 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhh-HHHhcCccccceec
Confidence 469999999999999999999999999999999 8999999999999999999999999988765 88899999888899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCc----ceEEEeCeEEEeCCCC-CCCCCCccCCC
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT----DNIVTAKDIIIATGSV-PFVPKGIEVDG 253 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~----g~~i~~d~lVlAtG~~-p~~p~~~~~~~ 253 (551)
|.+.+++.++..++++...+...+++.+|+++.|...+.+++.|+... ...+.++++|||||+. +..| +...++
T Consensus 117 dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~P-GI~IDe 195 (506)
T KOG1335|consen 117 DLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFP-GITIDE 195 (506)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCC-CeEecC
Confidence 999999999999999999999999999999999999999999888743 2679999999999995 4444 677888
Q ss_pred ceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceE
Q 008850 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (551)
Q Consensus 254 ~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~ 333 (551)
..+++++.++.+.+.|++++|||+|.+|+|++..+.++|.+||+++..+.+.+.+|.|+++..++.|.+ .|+++++++.
T Consensus 196 kkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~k-QgikF~l~tk 274 (506)
T KOG1335|consen 196 KKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQK-QGIKFKLGTK 274 (506)
T ss_pred ceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHh-cCceeEeccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 9999999999
Q ss_pred EE---eCCC-cEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcE
Q 008850 334 AT---KDGK-PVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHL 408 (551)
Q Consensus 334 ~~---~~~~-~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~I 408 (551)
+. .+++ .+.+++.+..+++ .++++||.+++++|++|.+..|++++.|+.. ++|.|.||..++ |.+|+|
T Consensus 275 v~~a~~~~dg~v~i~ve~ak~~k-~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~------t~vP~i 347 (506)
T KOG1335|consen 275 VTSATRNGDGPVEIEVENAKTGK-KETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQ------TKVPHI 347 (506)
T ss_pred EEEeeccCCCceEEEEEecCCCc-eeEEEeeEEEEEccCcccccCCChhhcccccccccceecccccc------ccCCce
Confidence 88 3333 7888888876555 5789999999999999999999999999987 889999999999 899999
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccc
Q 008850 409 YCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKAN 488 (551)
Q Consensus 409 yA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~ 488 (551)
|+||||+.+|++++.|..||..+.+.|.|.....+|..+|.++|++||+++||.||+|+++. |++|++++++|+.|
T Consensus 348 ~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeqlkee----gi~y~vgkfpF~aN 423 (506)
T KOG1335|consen 348 YAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEE----GIKYKVGKFPFSAN 423 (506)
T ss_pred EEecccCCcchhhhhhhhhchhheeeecccCcccccCCCCceeecccceeeeccchhhHHhc----CcceEeeecccccc
Confidence 99999999999999999999999999999887788888999999999999999999999974 99999999999999
Q ss_pred hhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHH
Q 008850 489 TKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 533 (551)
Q Consensus 489 ~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~ 533 (551)
.|+....+.+||+|+++|++ +++|||+|++|++|+|+|.+....
T Consensus 424 sRaktn~d~eg~vKvl~d~~-tdkiLGvHiigp~AgEli~EA~lA 467 (506)
T KOG1335|consen 424 SRAKTNNDTEGFVKVLADKE-TDKILGVHIIGPNAGELIHEASLA 467 (506)
T ss_pred chhhccCCccceeEEEecCC-CCcEEEEEEecCCHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999987544
No 3
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1e-66 Score=558.26 Aligned_cols=430 Identities=40% Similarity=0.630 Sum_probs=365.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC--ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccc----
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQV---- 173 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~--~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~---- 173 (551)
.+|||+|||+||+|+.||..++++|++|+|||++ .+||+|+|+||+|+|.|++.+..++.++...+...+|+..
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~ 194 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK 194 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence 3799999999999999999999999999999974 7999999999999999999999888776554445667641
Q ss_pred --------------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-------eEEEeceEEEeCCcEEEeC-cceEEE
Q 008850 174 --------------HAAGYDRQGVADHANNLATKIRNNLTNSMKALG-------VDILTGVGTILGPQKVKFG-TDNIVT 231 (551)
Q Consensus 174 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~v~~~-~g~~i~ 231 (551)
....+++..+.++.+..+..+...+...++..+ |+++.+.+.+.+.++|.+. +++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~ 274 (659)
T PTZ00153 195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFK 274 (659)
T ss_pred ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEE
Confidence 234679999999999999999888888888764 8999999999999988764 567899
Q ss_pred eCeEEEeCCCCCCCCCCccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHH
Q 008850 232 AKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPE 311 (551)
Q Consensus 232 ~d~lVlAtG~~p~~p~~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~ 311 (551)
||+||||||+.|..|++.+.++..++++++++.++..+++++|||+|++|+|+|..|.++|.+||++++.+++++.+|++
T Consensus 275 ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~e 354 (659)
T PTZ00153 275 VKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDAD 354 (659)
T ss_pred CCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHH
Confidence 99999999999999987777777899999998888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceEEEeceEEE---eCCC--cEEEEEecccCCC---------CCeEEecCEEEEeecCCCCCCCCCC
Q 008850 312 IGKLAQRVLINPRKIDYHTGVFAT---KDGK--PVTIELIDAKTKE---------PKDTLEVDAALIATGRAPFTNGLGL 377 (551)
Q Consensus 312 ~~~~~~~~l~~~~gi~~~~~~~~~---~~~~--~~~v~~~~g~~~~---------~~~~i~~D~vi~a~G~~p~~~~l~l 377 (551)
+++.+.+.+.+..||+++++..+. .+++ .+.+++.+..+++ +.+++++|.|++|+|++||++.+++
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l 434 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGL 434 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCc
Confidence 999998876333899999998877 2222 2455543321111 1247999999999999999998888
Q ss_pred cccccccCCCceeeCCCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcCC-------------CccCCC
Q 008850 378 ENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGR-------------DHVLNH 444 (551)
Q Consensus 378 ~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~-------------~~~~~~ 444 (551)
+..++..++|+|.||++||+.....+++|||||+|||++.+++++.|.+||+++++||+|. ...++|
T Consensus 435 ~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~ 514 (659)
T PTZ00153 435 DKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIY 514 (659)
T ss_pred hhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCcccccccccccccccccc
Confidence 8888877779999999999532212237999999999999999999999999999999986 455778
Q ss_pred CCcceEEEcCCCeeEecCCHHHHHhhchhcC--CeEEEEEEecccchhhhhcCC----------------------CceE
Q 008850 445 LSIPAACFTHPEISMVGLTEPQAREKAEKEG--FEVSVAKTSFKANTKALAENE----------------------GEGL 500 (551)
Q Consensus 445 ~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 500 (551)
..+|.++|++|++++||+||+||+++ + .++.+...+|..+.|+++.++ ++||
T Consensus 515 ~~iP~~ift~PeiA~VGlTE~eA~~~----g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~ 590 (659)
T PTZ00153 515 KNIPSVCYTTPELAFIGLTEKEAKEL----YPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGM 590 (659)
T ss_pred CcCCEEEECcCceEEeeCCHHHHHhc----CCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceE
Confidence 89999999999999999999999986 5 356777888999999876655 7899
Q ss_pred EEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHh
Q 008850 501 AKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 534 (551)
Q Consensus 501 ~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~ 534 (551)
+|||+|++ +++|||+|++|+++.++|+.++.+-
T Consensus 591 vKli~d~~-t~rILGa~ivG~~A~elI~~~a~aI 623 (659)
T PTZ00153 591 VKIVYLKD-TKEILGMFIVGSYASILIHEGVLAI 623 (659)
T ss_pred EEEEEECC-CCeEEEEEEECCCHHHHHHHHHHHH
Confidence 99999998 8999999999999999988776543
No 4
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-66 Score=546.96 Aligned_cols=417 Identities=29% Similarity=0.492 Sum_probs=366.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
.+|||+||||||||+.||..|+++|++|+|||+ +.+||+|+++||+|+|.++..+..++.. .+...+|+......+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~---~~~~~~g~~~~~~~~ 79 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEA---KALAEHGIVFGEPKI 79 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHH---hhhhhcCcccCCCCc
Confidence 459999999999999999999999999999998 5899999999999999999988776655 345667877666678
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeC--cc--eEEEeCeEEEeCCCCCCCCCCccCCCc
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPFVPKGIEVDGK 254 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~--~g--~~i~~d~lVlAtG~~p~~p~~~~~~~~ 254 (551)
++..+.++.+...+++...+...++..||+++.+++.+.+.+.+.+. ++ .++.||+||||||++|+.++..+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~ 159 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDP 159 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCC
Confidence 99999999999888888788888889999999999999988876653 44 479999999999999985554444555
Q ss_pred eeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEE
Q 008850 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (551)
Q Consensus 255 ~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~ 334 (551)
.++++.+...+...|++++|||+|++|+|+|..|.+.|.+||++++.+++++.+|+++++.+.+.+++ . |+++++..+
T Consensus 160 ~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~-~-v~i~~~~~v 237 (471)
T PRK06467 160 RIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKK-Q-FNIMLETKV 237 (471)
T ss_pred cEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhh-c-eEEEcCCEE
Confidence 68888888888888999999999999999999999999999999999999999999999999999986 6 999999887
Q ss_pred E---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEE
Q 008850 335 T---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYC 410 (551)
Q Consensus 335 ~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA 410 (551)
. .+++.+.+++.++. ++.+++++|.|++++|++||++.+.++..++.. ++|+|.||+++| |+.|||||
T Consensus 238 ~~i~~~~~~~~v~~~~~~--~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~------t~~p~VyA 309 (471)
T PRK06467 238 TAVEAKEDGIYVTMEGKK--APAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCR------TNVPHIFA 309 (471)
T ss_pred EEEEEcCCEEEEEEEeCC--CcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcc------cCCCCEEE
Confidence 7 33445566665431 123579999999999999999987777888877 789999999999 89999999
Q ss_pred ecCCCCCCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchh
Q 008850 411 IGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 490 (551)
Q Consensus 411 ~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 490 (551)
+|||++.+++++.|.+||+++|+||+|....+++..+|+++|++|++++||+||+||+++ |+++++..++|..+.+
T Consensus 310 iGDv~~~~~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~----g~~~~~~~~~~~~~~~ 385 (471)
T PRK06467 310 IGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEE----GIEYETATFPWAASGR 385 (471)
T ss_pred ehhhcCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeEEECCHHHHHhc----CCCeEEEEEecCcchh
Confidence 999999889999999999999999999877788889999999999999999999999975 9999999999999999
Q ss_pred hhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHh
Q 008850 491 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 534 (551)
Q Consensus 491 ~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~ 534 (551)
++..+.++||+||++|++ +++|||+|++|+++.++|+.++.+.
T Consensus 386 ~~~~~~~~g~~kli~d~~-t~~ilG~~~vg~~a~e~i~~~a~ai 428 (471)
T PRK06467 386 AIASDCADGMTKLIFDKE-THRVLGGAIVGTNAGELLGEIGLAI 428 (471)
T ss_pred hhhCCCCceEEEEEEECC-CCeEEEEEEECCCHHHHHHHHHHHH
Confidence 998888999999999998 8999999999999999998887653
No 5
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=3e-66 Score=542.17 Aligned_cols=409 Identities=29% Similarity=0.470 Sum_probs=359.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
+|||+||||||+|..||.. ..|.+|+|||++.+||+|+|+||+|+|.|+..+...+... +...+|+......++|
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIR---EAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHH---HHHhCCccCCCCcCCH
Confidence 3899999999999998876 4699999999999999999999999999999988776553 3456777654456899
Q ss_pred HHHHHHHHHHHHHHHHH-HHHH-HHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCceeec
Q 008850 181 QGVADHANNLATKIRNN-LTNS-MKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVIT 258 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~v~~ 258 (551)
..+.++.+...+++... .... ++..+|+++.|++.+.+.++|++.+++++.||+||||||++|+.|++++.++..+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~ 155 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHT 155 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEc
Confidence 99999998888887553 3444 778899999999999999999998777899999999999999999887766666788
Q ss_pred chhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE---
Q 008850 259 SDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT--- 335 (551)
Q Consensus 259 ~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~--- 335 (551)
.+++..+...|++++|||+|++|+|+|..|++.|.+|+++++++++++.+++++.+.+.+.++ .+|+++++..+.
T Consensus 156 ~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~~--~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 156 SDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELAS--KRWDVRLGRNVVGVS 233 (451)
T ss_pred hHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHh--cCeEEEeCCEEEEEE
Confidence 888888888899999999999999999999999999999999999999999999988877663 579999998776
Q ss_pred eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEecCC
Q 008850 336 KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDA 414 (551)
Q Consensus 336 ~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~ 414 (551)
.+++.+.+++.++ +++++|.|++|+|++||++++++++.++.. ++|+|.||+++| |+.|||||+|||
T Consensus 234 ~~~~~v~v~~~~g------~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~------Ts~p~IyA~GD~ 301 (451)
T PRK07846 234 QDGSGVTLRLDDG------STVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQR------TSAEGVFALGDV 301 (451)
T ss_pred EcCCEEEEEECCC------cEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcc------cCCCCEEEEeec
Confidence 2333455665443 579999999999999999988778888887 789999999999 899999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHcCCC--ccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhhh
Q 008850 415 NGKMMLAHAASAQGISVVEQVTGRD--HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKAL 492 (551)
Q Consensus 415 ~~~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (551)
++.+++++.|.+||+++++||++.. ...++..+|.++|++|+++++|+||+||++. |+++++...+|..+.+++
T Consensus 302 ~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~----g~~~~~~~~~~~~~~~~~ 377 (451)
T PRK07846 302 SSPYQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAA----GLDITVKVQNYGDVAYGW 377 (451)
T ss_pred CCCccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhc----CCCEEEEEEecCcchhhh
Confidence 9999999999999999999999763 3467788999999999999999999999975 999999999999999999
Q ss_pred hcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHH
Q 008850 493 AENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 533 (551)
Q Consensus 493 ~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~ 533 (551)
+.+.++||+||++|++ +++|||+|++|+++.++|+.++.+
T Consensus 378 ~~~~~~g~~Kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~a 417 (451)
T PRK07846 378 AMEDTTGFVKLIADRD-TGRLLGAHIIGPQASTLIQPLIQA 417 (451)
T ss_pred hCCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHH
Confidence 8888899999999998 899999999999999999887665
No 6
>PLN02546 glutathione reductase
Probab=100.00 E-value=5.4e-66 Score=546.99 Aligned_cols=413 Identities=30% Similarity=0.483 Sum_probs=361.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC----------CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhh
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG----------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA 168 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~----------~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
..+|||+|||+||||+.||..|+++|++|+|||+ +.+||+|+|+||+|+|.+++.+...+.+. ....
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~---~~~~ 153 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFE---ESRG 153 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHH---hhhh
Confidence 4579999999999999999999999999999996 56899999999999999999888776553 3456
Q ss_pred cCcccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCCCCC
Q 008850 169 LGLQVH-AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPK 247 (551)
Q Consensus 169 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~ 247 (551)
+|+... ...+||..+.++++....++...+...+++.||+++.|.+++++.+.|.++ |+++.||+||||||++|..|+
T Consensus 154 ~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~-G~~~~~D~LVIATGs~p~~P~ 232 (558)
T PLN02546 154 FGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVD-GKLYTARNILIAVGGRPFIPD 232 (558)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEEC-CEEEECCEEEEeCCCCCCCCC
Confidence 777643 346899999999999999999889999999999999999999999888874 578999999999999999888
Q ss_pred CccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceE
Q 008850 248 GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKID 327 (551)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~ 327 (551)
+++.+ .++++++++.+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++++.+.+.+++ .||+
T Consensus 233 IpG~~--~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~-~GV~ 309 (558)
T PLN02546 233 IPGIE--HAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSL-RGIE 309 (558)
T ss_pred CCChh--hccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHH-CCcE
Confidence 77643 36788888877778999999999999999999999999999999999999999999999999999987 8999
Q ss_pred EEeceEEE---e-CCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008850 328 YHTGVFAT---K-DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 402 (551)
Q Consensus 328 ~~~~~~~~---~-~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~ 402 (551)
++++..+. . +++.+.+++.+ ++.+.+|.|++++|++||++.+.+++.++.. ++|+|.||+++|
T Consensus 310 i~~~~~v~~i~~~~~g~v~v~~~~------g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~------ 377 (558)
T PLN02546 310 FHTEESPQAIIKSADGSLSLKTNK------GTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSR------ 377 (558)
T ss_pred EEeCCEEEEEEEcCCCEEEEEECC------eEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCce------
Confidence 99998776 2 23333443322 2345589999999999999987778888877 679999999999
Q ss_pred CCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcCCCc-cCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEE
Q 008850 403 NLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVA 481 (551)
Q Consensus 403 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~ 481 (551)
|++|||||+|||++.+++++.|..||+++|+||+|.+. ..+|..+|+++|++|++++||+||+||+++ |++++++
T Consensus 378 Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~----g~~~~~~ 453 (558)
T PLN02546 378 TSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEE----YGDVDVF 453 (558)
T ss_pred eCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHc----CCCeEEE
Confidence 89999999999999999999999999999999998653 356788999999999999999999999975 7788889
Q ss_pred EEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 482 KTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
+.+|..+.+++..+.++||+||++|++ +++|||+|++|+.+.++|+.++.+..
T Consensus 454 ~~~~~~~~~~~~~~~~~g~~Klv~d~~-t~~ILGa~ivG~~a~elI~~~a~ai~ 506 (558)
T PLN02546 454 TANFRPLKATLSGLPDRVFMKLIVCAK-TNKVLGVHMCGEDAPEIIQGFAVAVK 506 (558)
T ss_pred EEecccchhhhhCCCCcEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 999999888887777889999999988 89999999999999999999877643
No 7
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=2e-65 Score=536.22 Aligned_cols=413 Identities=28% Similarity=0.435 Sum_probs=360.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccc-ccccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH-AAGYD 179 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 179 (551)
+|||+||||||||++||..|+++|++|+|||++.+||+|++++|+|+|.++..+..++..+ +...+|++.. ...++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMH---DAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHh---HHhhcCcccCCcCccC
Confidence 5899999999999999999999999999999988999999999999999999888776553 4556777643 23578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCCCC-CCccCCCceeec
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVP-KGIEVDGKTVIT 258 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p-~~~~~~~~~v~~ 258 (551)
+..+.++.+.+++.+...+...++..+|+++.++..+.+.++|.++ +.++.||+||||||++|+.| ++++.+ ..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~-~~~~~~d~vIiAtGs~p~~p~~i~g~~--~~~~ 155 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVN-GRDYTAPHILIATGGKPSFPENIPGAE--LGTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEC-CEEEEeCEEEEecCCCCCCCCCCCCCc--eeEc
Confidence 9999999999998888888888899999999999988888888774 46799999999999999988 665543 2367
Q ss_pred chhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE---
Q 008850 259 SDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT--- 335 (551)
Q Consensus 259 ~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~--- 335 (551)
++++..+...|++++|||+|++|+|+|..|++.|.+||++++.+++++.+|+++++.+.+.+++ .||+++++..+.
T Consensus 156 ~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~-~gI~i~~~~~v~~i~ 234 (450)
T TIGR01421 156 SDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEK-EGINVHKLSKPVKVE 234 (450)
T ss_pred HHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHH-cCCEEEcCCEEEEEE
Confidence 7777777778999999999999999999999999999999999999999999999999999987 899999998876
Q ss_pred eC-CCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEecC
Q 008850 336 KD-GKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGD 413 (551)
Q Consensus 336 ~~-~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD 413 (551)
.+ ++...+++.++ .+.+++|.|++++|++||++.+.++..++.. ++|+|.||+++| |++|||||+||
T Consensus 235 ~~~~~~~~v~~~~g-----~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~------T~~p~IyAiGD 303 (450)
T TIGR01421 235 KTVEGKLVIHFEDG-----KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQN------TNVPGIYALGD 303 (450)
T ss_pred EeCCceEEEEECCC-----cEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCc------CCCCCEEEEEe
Confidence 22 22355666543 2479999999999999999988778888877 789999999999 89999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCC--ccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCe-EEEEEEecccchh
Q 008850 414 ANGKMMLAHAASAQGISVVEQVTGRD--HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFE-VSVAKTSFKANTK 490 (551)
Q Consensus 414 ~~~~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~-~~~~~~~~~~~~~ 490 (551)
|++.+.+++.|.+||+++|+||++.. .+.++..+|+++|++|++++||+||+||++++ |++ +++...+|..+.+
T Consensus 304 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~---g~~~~~~~~~~~~~~~~ 380 (450)
T TIGR01421 304 VVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKY---GKENIKVYNSSFTPMYY 380 (450)
T ss_pred cCCCcccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhc---CCCCEEEEEEEcChhHH
Confidence 99999999999999999999999643 35678899999999999999999999998752 554 7888889999999
Q ss_pred hhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 491 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 491 ~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
++..+.++||+||++|++ +++|||+|++|+.+.++|+.++.+-.
T Consensus 381 ~~~~~~~~g~~klv~~~~-~~~ilG~~~~g~~a~e~i~~~~~ai~ 424 (450)
T TIGR01421 381 AMTSEKQKCRMKLVCAGK-EEKVVGLHGIGDGVDEMLQGFAVAIK 424 (450)
T ss_pred HHhcCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 998899999999999987 89999999999999999999877643
No 8
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.2e-65 Score=536.66 Aligned_cols=415 Identities=31% Similarity=0.487 Sum_probs=363.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
+|||+||||||||++||+.++++|++|+|||++.+||+|++.||+|+|.++..+...+.+. ....+|+......+++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFE---DAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHh---hhHhcCcCCCCCCcCH
Confidence 5899999999999999999999999999999999999999999999999999888766553 3456777655567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEe-CcceEEEeCeEEEeCCCCCCCCCCccCCCceeecc
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF-GTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~-~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~v~~~ 259 (551)
..+.++++....++...++..++..||+++.+++.+++.+++.+ .++.++.||+||||||+.|..|++++.+ ..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~--~~~~~ 156 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHE--LGITS 156 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCcc--ceech
Confidence 99999999999888888888899999999999998888776655 3467899999999999999988776543 24566
Q ss_pred hhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE---e
Q 008850 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT---K 336 (551)
Q Consensus 260 ~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~---~ 336 (551)
++...+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++ .||+++++..+. .
T Consensus 157 ~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~-~gV~i~~~~~v~~i~~ 235 (446)
T TIGR01424 157 NEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEG-RGIRIHPQTSLTSITK 235 (446)
T ss_pred HHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHH-CCCEEEeCCEEEEEEE
Confidence 777777777999999999999999999999999999999999999999999999999999986 899999998776 2
Q ss_pred CCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEecCCC
Q 008850 337 DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDAN 415 (551)
Q Consensus 337 ~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~ 415 (551)
+++...+++.++ +++++|.|++|+|++||++.+.+++.++.. ++|+|.||+++| |++|||||+|||+
T Consensus 236 ~~~~~~v~~~~g------~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~------Ts~~~IyA~GD~~ 303 (446)
T TIGR01424 236 TDDGLKVTLSHG------EEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSR------TSIPSIYAVGDVT 303 (446)
T ss_pred cCCeEEEEEcCC------cEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCc------cCCCCEEEeeccC
Confidence 334455665443 579999999999999999987778888876 679999999999 8999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCC-ccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhhhhc
Q 008850 416 GKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAE 494 (551)
Q Consensus 416 ~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (551)
+.+++++.|.+||+++++||+|.. .++++..+|+++|++|+++++|+||+||++.+ ++++++.+.+|..+.+++..
T Consensus 304 ~~~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~---~~~~~~~~~~~~~~~~~~~~ 380 (446)
T TIGR01424 304 DRINLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKF---TGDILVYRAGFRPMKNTFSG 380 (446)
T ss_pred CCccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhc---CCCEEEEEEecCchHhHhhc
Confidence 999999999999999999999854 56778899999999999999999999998751 48899999999889999888
Q ss_pred CCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhhhc
Q 008850 495 NEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMTF 537 (551)
Q Consensus 495 ~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~~~ 537 (551)
+.++||+||++|++ +++|||+|++|+++.++|+.++.+-..-
T Consensus 381 ~~~~g~~kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 422 (446)
T TIGR01424 381 RQEKTLMKLVVDEK-DDKVLGAHMVGPDAAEIIQGIAIALKMG 422 (446)
T ss_pred CCCceEEEEEEeCC-CCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 88899999999997 8999999999999999999997765443
No 9
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=3.1e-65 Score=538.92 Aligned_cols=419 Identities=29% Similarity=0.486 Sum_probs=366.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccc-cc
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH-AA 176 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ 176 (551)
|+.+|||+||||||||++||..|+++|++|+|||+..+||+|++++|+|+|.++..+...+... ....+|+... ..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~ 78 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLAR---RAAEYGVSVGGPV 78 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHH---HHHhcCcccCccC
Confidence 3456999999999999999999999999999999999999999999999999999887766553 3455777643 24
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHc-CeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCce
Q 008850 177 GYDRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (551)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~ 255 (551)
.+++..+.++.+....++...+...+++. ||+++.++..+.+.+++.++ +.++.||+||||||+.|+.|++++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~-~~~~~~d~lViATGs~p~~p~i~G~~~~~ 157 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVG-GETLRAKRIFINTGARAAIPPIPGLDEVG 157 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEEC-cEEEEeCEEEEcCCCCCCCCCCCCCCcCc
Confidence 68999999999888888777777788877 99999999988888888875 46799999999999999999888877777
Q ss_pred eecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE
Q 008850 256 VITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT 335 (551)
Q Consensus 256 v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~ 335 (551)
+++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++ .||+++++..+.
T Consensus 158 ~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~-~GV~i~~~~~V~ 236 (463)
T PRK06370 158 YLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILER-EGIDVRLNAECI 236 (463)
T ss_pred eEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHh-CCCEEEeCCEEE
Confidence 8888888877778999999999999999999999999999999999999999999999999999986 899999998777
Q ss_pred ---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEe
Q 008850 336 ---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCI 411 (551)
Q Consensus 336 ---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~ 411 (551)
.+++...+++... ++..++++|.|++|+|++||++.+.+++.++.. ++|+|.||+++| |+.|||||+
T Consensus 237 ~i~~~~~~~~v~~~~~---~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~------t~~~~IyAi 307 (463)
T PRK06370 237 RVERDGDGIAVGLDCN---GGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLR------TTNPGIYAA 307 (463)
T ss_pred EEEEcCCEEEEEEEeC---CCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCc------CCCCCEEEe
Confidence 2333444444321 123579999999999999999877667778876 689999999999 899999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHcCC-CccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchh
Q 008850 412 GDANGKMMLAHAASAQGISVVEQVTGR-DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 490 (551)
Q Consensus 412 GD~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 490 (551)
|||++.+++++.|..||+++|+||++. +..+++..+|.++|++|+++++|+||+||+++ |+++++.+++|..+.+
T Consensus 308 GD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~----g~~~~~~~~~~~~~~~ 383 (463)
T PRK06370 308 GDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKS----GRRVLVGTRPMTRVGR 383 (463)
T ss_pred eecCCCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHc----CCCeEEEEEecCcchh
Confidence 999999999999999999999999985 55677888999999999999999999999875 9999999999999999
Q ss_pred hhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 491 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 491 ~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
++..+.++||+||++|++ +++|||+|++|+.+.++|+.++..-.
T Consensus 384 ~~~~~~~~g~~kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~ai~ 427 (463)
T PRK06370 384 AVEKGETQGFMKVVVDAD-TDRILGATILGVHGDEMIHEILDAMY 427 (463)
T ss_pred HHhcCCCCEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 998888899999999998 89999999999999999888766543
No 10
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=3.9e-65 Score=534.35 Aligned_cols=409 Identities=29% Similarity=0.475 Sum_probs=352.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
+|||+|||+||+|+.||.. ..|.+|+|||++.+||+|+|+||+|+|.|+..+...+..+ +...+|+......++|
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~---~~~~~g~~~~~~~~d~ 76 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIG---ESARLGIDAEIDSVRW 76 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHH---HhhccCeeCCCCccCH
Confidence 4899999999999998654 4699999999999999999999999999999988777654 3455777644456799
Q ss_pred HHHHHHHHH-HHHHHHHH-HHHHH--HHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCcee
Q 008850 181 QGVADHANN-LATKIRNN-LTNSM--KALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (551)
Q Consensus 181 ~~~~~~~~~-~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~v 256 (551)
..+.++... ....+... ..... +..||+++.|++.+.+.++|.+.++.+++||+||||||+.|..|++.+..+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~ 156 (452)
T TIGR03452 77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRY 156 (452)
T ss_pred HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEE
Confidence 999998877 55555432 22222 347999999999999999999987778999999999999999887655455567
Q ss_pred ecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE-
Q 008850 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT- 335 (551)
Q Consensus 257 ~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~- 335 (551)
++.+++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.++ .+|+++++..+.
T Consensus 157 ~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~--~gI~i~~~~~V~~ 234 (452)
T TIGR03452 157 HTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAK--KKWDIRLGRNVTA 234 (452)
T ss_pred EcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHh--cCCEEEeCCEEEE
Confidence 88888888877899999999999999999999999999999999999999899999988877664 579999998776
Q ss_pred --eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEec
Q 008850 336 --KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIG 412 (551)
Q Consensus 336 --~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~G 412 (551)
.+++.+.+++.++ +++++|.|++++|++||+++++++..+++. ++|+|.||+++| |++|||||+|
T Consensus 235 i~~~~~~v~v~~~~g------~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~------Ts~~~IyA~G 302 (452)
T TIGR03452 235 VEQDGDGVTLTLDDG------STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGR------TSARGVWALG 302 (452)
T ss_pred EEEcCCeEEEEEcCC------CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcc------cCCCCEEEee
Confidence 3344455665443 579999999999999999988777888887 789999999999 8999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCc--cCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchh
Q 008850 413 DANGKMMLAHAASAQGISVVEQVTGRDH--VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 490 (551)
Q Consensus 413 D~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 490 (551)
||++.+++++.|.+||+++|+||++... ..++..+|+++|++|++++||+||+||++. |+++++...+|..+.+
T Consensus 303 D~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~----g~~~~~~~~~~~~~~~ 378 (452)
T TIGR03452 303 DVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREA----GHDITVKIQNYGDVAY 378 (452)
T ss_pred cccCcccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhc----CCCeEEEEecCCchhh
Confidence 9999999999999999999999998643 567788999999999999999999999975 9999999999999999
Q ss_pred hhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHH
Q 008850 491 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 533 (551)
Q Consensus 491 ~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~ 533 (551)
++..++++||+||++|++ +++|||+|++|+.+.++|+.++.+
T Consensus 379 ~~~~~~~~g~~Klv~d~~-t~~ilG~~~vg~~a~e~i~~~~~a 420 (452)
T TIGR03452 379 GWAMEDTTGFCKLIADRD-TGKLLGAHIIGPQASSLIQPLITA 420 (452)
T ss_pred HhhcCCCCeEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHH
Confidence 988888899999999998 899999999999999998887655
No 11
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=6.1e-65 Score=533.77 Aligned_cols=413 Identities=27% Similarity=0.428 Sum_probs=353.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-CCcEEEeeC---------CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG---------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKAL 169 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~-g~~V~liE~---------~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
.+|||+||||||+|+.||..++++ |.+|+|||+ +.+||+|+|+||+|+|.|++.+...+..+ +...+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~---~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLR---ESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHH---Hhhcc
Confidence 459999999999999999999997 999999997 47999999999999999999988766554 34556
Q ss_pred Ccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCeEEEeceEEEeCCcEEEeCc--------ceEEEeCeEEEe
Q 008850 170 GLQVH--AAGYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTILGPQKVKFGT--------DNIVTAKDIIIA 238 (551)
Q Consensus 170 g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~v~~~~--------g~~i~~d~lVlA 238 (551)
|+... ...++|..+.++.+..+.++...+...++. .+|+++.|.+.+.+.++|.+.. .+++.||+||||
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIA 158 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLA 158 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEe
Confidence 77532 346799999999999999998888878877 4999999999999999887742 257999999999
Q ss_pred CCCCCCCCCCccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhC---CCeEEEEcccCcCCCCCCHHHHHH
Q 008850 239 TGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL---GSEVTFIEALDQLMPGFDPEIGKL 315 (551)
Q Consensus 239 tG~~p~~p~~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~ 315 (551)
||++|..|++++.+ .++++++++.+...|++++|||+|++|+|+|..|..+ |.+||++++.+++++.+|+++++.
T Consensus 159 TGs~p~~p~i~G~~--~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~ 236 (486)
T TIGR01423 159 TGSWPQMLGIPGIE--HCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKE 236 (486)
T ss_pred cCCCCCCCCCCChh--heechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHH
Confidence 99999988877643 2577777777777899999999999999999877665 999999999999999999999999
Q ss_pred HHHHHhCCCceEEEeceEEE---eC-CCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCcee
Q 008850 316 AQRVLINPRKIDYHTGVFAT---KD-GKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVP 390 (551)
Q Consensus 316 ~~~~l~~~~gi~~~~~~~~~---~~-~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~ 390 (551)
+.+.|++ .||+++++..+. .+ +....+++.++ +++++|.|++++|++||++.+.+++.++.. ++|+|.
T Consensus 237 l~~~L~~-~GI~i~~~~~v~~i~~~~~~~~~v~~~~g------~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~ 309 (486)
T TIGR01423 237 LTKQLRA-NGINIMTNENPAKVTLNADGSKHVTFESG------KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQ 309 (486)
T ss_pred HHHHHHH-cCCEEEcCCEEEEEEEcCCceEEEEEcCC------CEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEe
Confidence 9999987 899999998776 22 22345666443 579999999999999999988778888876 789999
Q ss_pred eCCCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcCCC-ccCCCCCcceEEEcCCCeeEecCCHHHHHh
Q 008850 391 VDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQARE 469 (551)
Q Consensus 391 Vd~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~ 469 (551)
||+++| |++|||||+|||++.+++++.|.+||+++++||+|.. ..+++..+|+++|+.|++++||+||+||++
T Consensus 310 Vd~~l~------Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~ 383 (486)
T TIGR01423 310 VDEFSR------TNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAK 383 (486)
T ss_pred cCCCCc------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHh
Confidence 999999 8999999999999999999999999999999999864 446777899999999999999999999997
Q ss_pred hchhcCCeEEEEEEecccchhhhhcCC-CceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 470 KAEKEGFEVSVAKTSFKANTKALAENE-GEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
. +.++.+.+.++..+.+++.... .+||+||++|++ +++|||+|++|+.+.++|+.++.+-.
T Consensus 384 ~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~-~~~iLGa~ivg~~a~elI~~~~~ai~ 445 (486)
T TIGR01423 384 K----FEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHA-DGTVLGVHLLGDSSPEIIQAVGICLK 445 (486)
T ss_pred c----CCceEEEEEeeCchhhhhccCccCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 4 5567777778777766554222 369999999988 89999999999999999998877643
No 12
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=9.9e-65 Score=533.50 Aligned_cols=414 Identities=33% Similarity=0.507 Sum_probs=362.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
.+|||+||||||||++||..|+++|++|+|||++.+||+|++.+|+|+|.+++.+...+.+.. +...+|+......++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~--~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHD--YAPGYGFDVTENKFD 80 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHh--HHHhcCCCCCCCCcC
Confidence 459999999999999999999999999999999999999999999999999988876654432 134567665555689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCceeecc
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~v~~~ 259 (551)
+..+.++.+...+++...+...+...+|+++.+++.+++.++|++ +++++.||+||||||+.|..|++++.+ .++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~--~~~~~ 157 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAE--YGITS 157 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcc--eeEch
Confidence 999999888888888877888888899999999999999899988 567899999999999999988876543 36777
Q ss_pred hhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE---e
Q 008850 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT---K 336 (551)
Q Consensus 260 ~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~---~ 336 (551)
++.+.+...+++++|||+|++|+|+|..|++.|.+|+++++++.+++.+++++.+.+.+.+++ .||+++++..+. .
T Consensus 158 ~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~-~GV~i~~~~~V~~i~~ 236 (450)
T PRK06116 158 DGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEK-KGIRLHTNAVPKAVEK 236 (450)
T ss_pred hHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHH-CCcEEECCCEEEEEEE
Confidence 777777778899999999999999999999999999999999999999999999999999987 899999998877 2
Q ss_pred CCCc-EEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEecCC
Q 008850 337 DGKP-VTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDA 414 (551)
Q Consensus 337 ~~~~-~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~ 414 (551)
+++. +.+++.++ +++++|.|++++|++|+++.+.++..++.. ++|+|.||+++| |++|||||+|||
T Consensus 237 ~~~g~~~v~~~~g------~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------Ts~~~IyA~GD~ 304 (450)
T PRK06116 237 NADGSLTLTLEDG------ETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQN------TNVPGIYAVGDV 304 (450)
T ss_pred cCCceEEEEEcCC------cEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCC------cCCCCEEEEeec
Confidence 2232 55666554 579999999999999999987777788876 689999999999 899999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCc--cCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCe--EEEEEEecccchh
Q 008850 415 NGKMMLAHAASAQGISVVEQVTGRDH--VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFE--VSVAKTSFKANTK 490 (551)
Q Consensus 415 ~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~--~~~~~~~~~~~~~ 490 (551)
++.+++++.|.+||+++|+||+|... ..++..+|+++|+.|++++||+||+||+++ |++ +++.+.++..+.+
T Consensus 305 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~----~~~~~~~~~~~~~~~~~~ 380 (450)
T PRK06116 305 TGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQ----YGEDNVKVYRSSFTPMYT 380 (450)
T ss_pred CCCcCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHh----CCCCcEEEEEEecchhHH
Confidence 99889999999999999999998543 467889999999999999999999999985 666 8888999999999
Q ss_pred hhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhhh
Q 008850 491 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMT 536 (551)
Q Consensus 491 ~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~~ 536 (551)
++..+.++||+||++|++ +++|||+|++|+.+.++|+.++.+...
T Consensus 381 ~~~~~~~~g~~klv~~~~-~~~ilG~~~~g~~a~e~i~~~~~ai~~ 425 (450)
T PRK06116 381 ALTGHRQPCLMKLVVVGK-EEKVVGLHGIGFGADEMIQGFAVAIKM 425 (450)
T ss_pred HHhcCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence 988888999999999998 899999999999999999998776443
No 13
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-64 Score=532.22 Aligned_cols=418 Identities=34% Similarity=0.556 Sum_probs=359.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
+|||+||||||||++||..++++|++|+|||+ +.+||+|+++||+|+|.++..+..++.+.. .....+|+.. ...++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~-~~~~~~gi~~-~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASG-GEFAHLGIEV-KPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhh-hhhhhcCccc-cCccC
Confidence 48999999999999999999999999999997 789999999999999999988877654322 1234567654 34678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEe--Ccc--eEEEeCeEEEeCCCCCCCCCCccCCCce
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~--~~g--~~i~~d~lVlAtG~~p~~p~~~~~~~~~ 255 (551)
+..+.++....+.++...+...++..+|+++.|.+.+.+.+++.+ .++ .++.||+||||||++|..+++...++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~ 160 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQR 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCe
Confidence 999999888888888777777888889999999988888776654 344 3699999999999998655555556666
Q ss_pred eecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE
Q 008850 256 VITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT 335 (551)
Q Consensus 256 v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~ 335 (551)
++++++++.+...|++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+++.+++ .||+++++..+.
T Consensus 161 ~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~-~gV~i~~~~~V~ 239 (466)
T PRK06115 161 IIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTK-QGMKFKLGSKVT 239 (466)
T ss_pred EECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHh-cCCEEEECcEEE
Confidence 7888888877778999999999999999999999999999999999999999999999999999987 899999998876
Q ss_pred ---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEe
Q 008850 336 ---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCI 411 (551)
Q Consensus 336 ---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~ 411 (551)
.+++.+.+++.+.. +++.+++++|.|++++|++||++.++++..++.. ++| +.||+++| |++|||||+
T Consensus 240 ~i~~~~~~v~v~~~~~~-~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~------Ts~~~IyA~ 311 (466)
T PRK06115 240 GATAGADGVSLTLEPAA-GGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHR------TSVPGVWVI 311 (466)
T ss_pred EEEEcCCeEEEEEEEcC-CCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCee------cCCCCEEEe
Confidence 33344555554211 1223579999999999999999988777778776 455 77999999 899999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhh
Q 008850 412 GDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKA 491 (551)
Q Consensus 412 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~ 491 (551)
|||++.+++++.|.+||+++|+||++.+...++..+|.++|++|++++||+||+||++. |+++++.+++|..+.|+
T Consensus 312 GD~~~~~~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~----g~~~~~~~~~~~~~~~~ 387 (466)
T PRK06115 312 GDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGKTEEQLKAE----GRAYKVGKFPFTANSRA 387 (466)
T ss_pred eecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEeeCCHHHHHHC----CCCEEEEEEecccChhh
Confidence 99999999999999999999999998766678889999999999999999999999975 89999999999999999
Q ss_pred hhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHh
Q 008850 492 LAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 534 (551)
Q Consensus 492 ~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~ 534 (551)
.+.++++||+||++|++ +++|||+|++|+.+.++|+.++.+-
T Consensus 388 ~~~~~~~g~~klv~~~~-~~~ilG~~~~g~~a~e~i~~~~~ai 429 (466)
T PRK06115 388 KINHETEGFAKILADAR-TDEVLGVHMVGPSVSEMIGEFCVAM 429 (466)
T ss_pred HhcCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHH
Confidence 98888899999999998 8999999999999999998876653
No 14
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-64 Score=531.83 Aligned_cols=417 Identities=43% Similarity=0.700 Sum_probs=367.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..|||+||||||||++||..|+++|++|+|||+..+||+|.+++|+|+|.++..+..++..+ ....+|+......++
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~---~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEAR---HSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHH---HHHhcCcccCCCccC
Confidence 35999999999999999999999999999999977999999999999999998887766543 346677765555679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeC--c-ceEEEeCeEEEeCCCCCCCCCCccCCCcee
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--T-DNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~--~-g~~i~~d~lVlAtG~~p~~p~~~~~~~~~v 256 (551)
+..+.++.+...+.+...+...+++.+|+++.+++.+++.+.+.+. + +.++.||+||||||+.|..|++.+.++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v 159 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVI 159 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence 9999999999988888778888888999999999998888777664 2 367999999999999998777666666678
Q ss_pred ecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE-
Q 008850 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT- 335 (551)
Q Consensus 257 ~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~- 335 (551)
++++++..+...+++++|||+|++|+|+|..|++.|.+||++++.+++++.+++++.+.+.+.+++ .||+++++..+.
T Consensus 160 ~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~-~gV~i~~~~~V~~ 238 (462)
T PRK06416 160 WTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKK-RGIKIKTGAKAKK 238 (462)
T ss_pred EcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHH-cCCEEEeCCEEEE
Confidence 888888888778899999999999999999999999999999999999999999999999999987 899999998777
Q ss_pred --eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCCCcEEEecC
Q 008850 336 --KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGD 413 (551)
Q Consensus 336 --~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD 413 (551)
.+++.+.+++.++ +..+++++|.|++++|++|+++.+++++.++..++|+|.||+++| |+.|+|||+||
T Consensus 239 i~~~~~~v~v~~~~g---g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~------t~~~~VyAiGD 309 (462)
T PRK06416 239 VEQTDDGVTVTLEDG---GKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLR------TNVPNIYAIGD 309 (462)
T ss_pred EEEeCCEEEEEEEeC---CeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCc------cCCCCEEEeee
Confidence 3334455555443 122579999999999999999987777788876789999999999 89999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhhhh
Q 008850 414 ANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALA 493 (551)
Q Consensus 414 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (551)
|++.+++++.|..||+++|+||+|.+.++++..+|.++|++|+++++|+||+||+++ |+++++.+++|..+.++.+
T Consensus 310 ~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~----g~~~~~~~~~~~~~~~~~~ 385 (462)
T PRK06416 310 IVGGPMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEE----GFDVKVVKFPFAGNGKALA 385 (462)
T ss_pred cCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhc----CCCeEEEEEecCcChHhHh
Confidence 998889999999999999999999877788889999999999999999999999975 9999999999999999998
Q ss_pred cCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHh
Q 008850 494 ENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 534 (551)
Q Consensus 494 ~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~ 534 (551)
.+.++||+||++|++ +++|||+|++|+++.++|+.++.+-
T Consensus 386 ~~~~~g~~kli~~~~-~~~ilG~~~~g~~a~e~i~~~~~ai 425 (462)
T PRK06416 386 LGETDGFVKLIFDKK-DGEVLGAHMVGARASELIQEAQLAI 425 (462)
T ss_pred cCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHH
Confidence 888899999999987 8999999999999999998887663
No 15
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=2.4e-64 Score=534.01 Aligned_cols=413 Identities=26% Similarity=0.422 Sum_probs=353.3
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
..+|||+||||||||++||..+++.|.+|+|||++.+||+|+|+||+|+|.++..+...+.. .+...+|+... ..+
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~---~~~~~~Gi~~~-~~~ 121 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDIL---ENSRHYGFDTQ-FSF 121 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhhhhcccHHHH---HHHHhcCCCcc-Ccc
Confidence 35699999999999999999999999999999999999999999999999999888766544 34455676532 357
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEe----------------------------CcceEE
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----------------------------GTDNIV 230 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~----------------------------~~g~~i 230 (551)
++..+.++.+..+..+...+...++..||+++.|++.+.+.++|.+ +++.++
T Consensus 122 d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i 201 (561)
T PTZ00058 122 NLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVI 201 (561)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEE
Confidence 9999999999999888888888889999999999999988877642 355689
Q ss_pred EeCeEEEeCCCCCCCCCCccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCH
Q 008850 231 TAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDP 310 (551)
Q Consensus 231 ~~d~lVlAtG~~p~~p~~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~ 310 (551)
.||+||||||+.|..|++++.+ .+++++++..+.. |++++|||+|++|+|+|..|.++|.+||++++++++++.+|+
T Consensus 202 ~ad~lVIATGS~P~~P~IpG~~--~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~ 278 (561)
T PTZ00058 202 EGKNILIAVGNKPIFPDVKGKE--FTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDE 278 (561)
T ss_pred ECCEEEEecCCCCCCCCCCCce--eEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCH
Confidence 9999999999999988877643 3677777777655 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceEEEeceEEE--e-CC-CcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCC
Q 008850 311 EIGKLAQRVLINPRKIDYHTGVFAT--K-DG-KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQR 386 (551)
Q Consensus 311 ~~~~~~~~~l~~~~gi~~~~~~~~~--~-~~-~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~ 386 (551)
++.+.+.+.+++ .||+++++..+. . ++ ..+.+.+.++ .+++++|.|++++|++||++.++++..++..++
T Consensus 279 ~i~~~l~~~L~~-~GV~i~~~~~V~~I~~~~~~~v~v~~~~~-----~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~ 352 (561)
T PTZ00058 279 TIINELENDMKK-NNINIITHANVEEIEKVKEKNLTIYLSDG-----RKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPK 352 (561)
T ss_pred HHHHHHHHHHHH-CCCEEEeCCEEEEEEecCCCcEEEEECCC-----CEEEECCEEEECcCCCCCccccCccccceecCC
Confidence 999999999987 899999998776 2 22 2344444332 257999999999999999998887777666678
Q ss_pred CceeeCCCCccccCCCCCCCcEEEecCCCC----------------------------------CCCcHHHHHHHHHHHH
Q 008850 387 GFVPVDERMRVIDANGNLVPHLYCIGDANG----------------------------------KMMLAHAASAQGISVV 432 (551)
Q Consensus 387 G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~----------------------------------~~~~~~~A~~~g~~aa 432 (551)
|+|.||+++| |+.|||||+|||++ .+++++.|.+||+++|
T Consensus 353 G~I~VDe~lq------Ts~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa 426 (561)
T PTZ00058 353 GYIKVDDNQR------TSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLA 426 (561)
T ss_pred CeEEECcCCc------cCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHH
Confidence 9999999999 89999999999998 5789999999999999
Q ss_pred HHHcCCC-ccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCC-eEEEEEEecccchhhhhc----CCCceEEEEEEe
Q 008850 433 EQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGF-EVSVAKTSFKANTKALAE----NEGEGLAKGVPR 506 (551)
Q Consensus 433 ~~i~g~~-~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~kli~~ 506 (551)
+||+|.. ...++..+|+++|++|++++||+||+||++++ |+ ++.+...+|..+.++... ..++||+||+++
T Consensus 427 ~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~ 503 (561)
T PTZ00058 427 DRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIY---GKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCV 503 (561)
T ss_pred HHHhCCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhc---CCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEE
Confidence 9999863 34567889999999999999999999999753 54 577778889888887643 346799999999
Q ss_pred CCCCCCcceeeeeCCChhHHHHHHHHHh
Q 008850 507 NFASSERTNQHSDRPSKPNLVKKLADVY 534 (551)
Q Consensus 507 ~~~~~~~lg~~~~g~~~~~~i~~l~~~~ 534 (551)
++ +++|||+|++|+++.++|+.++.+-
T Consensus 504 ~~-t~~ILG~~ivG~~a~elI~~~a~ai 530 (561)
T PTZ00058 504 GK-EELIKGLHIVGLNADEILQGFAVAL 530 (561)
T ss_pred CC-CCEEEEEEEECCCHHHHHHHHHHHH
Confidence 87 8999999999999999998887664
No 16
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=4.4e-64 Score=530.86 Aligned_cols=414 Identities=28% Similarity=0.434 Sum_probs=361.3
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
+.+|||+||||||||+++|..|++.|++|+|||+ +.+||+|.+.+|+|+|.++.....+........+..++. ...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~---~~~ 79 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRV---KLR 79 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCC---cCc
Confidence 3469999999999999999999999999999999 689999999999999998877766554433322222221 234
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEe--Ccc--eEEEeCeEEEeCCCCCCCCCCccCCC
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVDG 253 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~--~~g--~~i~~d~lVlAtG~~p~~p~~~~~~~ 253 (551)
+++..+.++.+...+.+...+...+++.+|+++.+++.+++.+.+.+ .++ .++.||+||||||+.|..|++.++.+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~ 159 (461)
T PRK05249 80 ITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDH 159 (461)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCC
Confidence 68889999988888888777888888899999999988888766544 344 37999999999999999998888777
Q ss_pred ceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceE
Q 008850 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (551)
Q Consensus 254 ~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~ 333 (551)
..+++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++++++++.+|+++.+.+.+.+++ .||+++++..
T Consensus 160 ~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~-~gI~v~~~~~ 238 (461)
T PRK05249 160 PRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRD-SGVTIRHNEE 238 (461)
T ss_pred CeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHH-cCCEEEECCE
Confidence 888999888888888999999999999999999999999999999999999999999999999999987 8999999988
Q ss_pred EE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEE
Q 008850 334 AT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLY 409 (551)
Q Consensus 334 ~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~Iy 409 (551)
+. .+++.+.+++.++ +++++|.|++|+|++||++.+.++..++.. ++|+|.||+++| |+.||||
T Consensus 239 v~~i~~~~~~~~v~~~~g------~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------t~~~~Iy 306 (461)
T PRK05249 239 VEKVEGGDDGVIVHLKSG------KKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQ------TAVPHIY 306 (461)
T ss_pred EEEEEEeCCeEEEEECCC------CEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcc------cCCCCEE
Confidence 77 2344455655443 579999999999999999987777888876 789999999999 8999999
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccch
Q 008850 410 CIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANT 489 (551)
Q Consensus 410 A~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 489 (551)
|+|||++.+++++.|..||++||.||+|.+...++..+|.++|+.|++++||+||+||++. |+++++.+.+|..+.
T Consensus 307 AiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~----g~~~~~~~~~~~~~~ 382 (461)
T PRK05249 307 AVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQELTAA----KVPYEVGRARFKELA 382 (461)
T ss_pred EeeecCCCcccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHHHHHc----CCCeEEEEEcccccc
Confidence 9999999889999999999999999998766677889999999999999999999999975 899999999999999
Q ss_pred hhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHH
Q 008850 490 KALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 533 (551)
Q Consensus 490 ~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~ 533 (551)
++...+.++||+||++|++ +++|||+|++|+.+.++|+.++.+
T Consensus 383 ~~~~~~~~~g~~klv~~~~-~~~ilG~~~~g~~a~e~i~~~~~a 425 (461)
T PRK05249 383 RAQIAGDNVGMLKILFHRE-TLEILGVHCFGERATEIIHIGQAI 425 (461)
T ss_pred ceeecCCCCcEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHH
Confidence 9988888899999999998 899999999999999998877655
No 17
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=6.5e-64 Score=529.17 Aligned_cols=413 Identities=31% Similarity=0.503 Sum_probs=360.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
|||+||||||||++||..|+++|++|+|||++.+||+|+++||+|+|.++..+...+.... ..+|+......+++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~----~~~g~~~~~~~~~~~ 76 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARK----PPFGGLAATVAVDFG 76 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhc----cCcccccCCCccCHH
Confidence 6999999999999999999999999999999889999999999999999988776554432 135655445568899
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHcCeEEEeceEEEeCCcEEEeCcc-eEEEeCeEEEeCCCCCCCCCCccCCCceeecc
Q 008850 182 GVADHANNLATKIRN-NLTNSMKALGVDILTGVGTILGPQKVKFGTD-NIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g-~~i~~d~lVlAtG~~p~~p~~~~~~~~~v~~~ 259 (551)
.+..+.+.....+.. .+...+++.+|+++.+++.+.+.++|.+.++ ..+.||+||||||+.|..|++++.+...++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~ 156 (463)
T TIGR02053 77 ELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTS 156 (463)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECc
Confidence 999998888877754 3566778889999999999999999988764 46899999999999999998887766668888
Q ss_pred hhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE---e
Q 008850 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT---K 336 (551)
Q Consensus 260 ~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~---~ 336 (551)
+++..+...+++++|||+|.+|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++ .||+++++..+. .
T Consensus 157 ~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~-~gV~i~~~~~V~~i~~ 235 (463)
T TIGR02053 157 EEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAE-EGIEVVTSAQVKAVSV 235 (463)
T ss_pred hhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHH-cCCEEEcCcEEEEEEE
Confidence 888877777899999999999999999999999999999999999999999999999999986 899999998776 3
Q ss_pred CCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEecCCC
Q 008850 337 DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDAN 415 (551)
Q Consensus 337 ~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~ 415 (551)
+++...+++.+. +..+++++|.|++|+|++|+++.++++..++.. ++|+|.||+++| |+.|||||+|||+
T Consensus 236 ~~~~~~v~~~~~---~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------Ts~~~VyAiGD~~ 306 (463)
T TIGR02053 236 RGGGKIITVEKP---GGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLR------TSNPGIYAAGDVT 306 (463)
T ss_pred cCCEEEEEEEeC---CCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCcc------CCCCCEEEeeecC
Confidence 334445555321 123579999999999999999976677788876 689999999999 8999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCC-CccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhhhhc
Q 008850 416 GKMMLAHAASAQGISVVEQVTGR-DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAE 494 (551)
Q Consensus 416 ~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (551)
+.+++++.|..||++||.||++. +..+++..+|.++|++|++++||+||+||+++ |+++++..+++..++++...
T Consensus 307 ~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~~~~~~~~~ 382 (463)
T TIGR02053 307 GGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKA----GIECDCRTLPLTNVPRARIN 382 (463)
T ss_pred CCcccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhc----CCCeEEEEEecccchHHHhc
Confidence 99999999999999999999986 66677888999999999999999999999875 99999999999999999988
Q ss_pred CCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHH
Q 008850 495 NEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 533 (551)
Q Consensus 495 ~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~ 533 (551)
+.++||+||++|++ +++|||+|++|+.+.++|+.++.+
T Consensus 383 ~~~~g~~kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~a 420 (463)
T TIGR02053 383 RDTRGFIKLVAEPG-TGKVLGVQVVAPEAAEVINEAALA 420 (463)
T ss_pred CCCcEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHH
Confidence 88899999999988 899999999999999998887554
No 18
>PLN02507 glutathione reductase
Probab=100.00 E-value=7.6e-64 Score=528.98 Aligned_cols=415 Identities=30% Similarity=0.454 Sum_probs=358.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC----------CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhh
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG----------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA 168 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~----------~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
..+|||+||||||+|+.||..++++|++|+|||+ +.+||+|+++||+|+|.+++.+...+... +...
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~---~~~~ 99 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFE---DAKN 99 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHH---HHHh
Confidence 4569999999999999999999999999999995 56999999999999999999887766553 3456
Q ss_pred cCcccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEe--Ccce--EEEeCeEEEeCCCCC
Q 008850 169 LGLQVH-AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTDN--IVTAKDIIIATGSVP 243 (551)
Q Consensus 169 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~--~~g~--~i~~d~lVlAtG~~p 243 (551)
+|+... ...+++..+.+++.....++...+...+...+|+++.+.+.+++.+.+.+ .+|+ ++.||+||||||++|
T Consensus 100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCC
Confidence 777642 34689999999988888888888888888899999999999988766554 4544 588999999999999
Q ss_pred CCCCCccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCC
Q 008850 244 FVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINP 323 (551)
Q Consensus 244 ~~p~~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~ 323 (551)
..|++++.+ ..++++++..++..+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+|+++++.+.+.+++
T Consensus 180 ~~p~ipG~~--~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~- 256 (499)
T PLN02507 180 QRPNIPGKE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEG- 256 (499)
T ss_pred CCCCCCCcc--ceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHh-
Confidence 988776643 24577777777778999999999999999999999999999999999999999999999999999987
Q ss_pred CceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCcccc
Q 008850 324 RKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVID 399 (551)
Q Consensus 324 ~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~ 399 (551)
.||+++++..+. .+++.+.+++.++ +++++|.|++++|++||++.+.++..++.. ++|+|.||+++|
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g------~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~--- 327 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHG------EEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSR--- 327 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCC------cEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCc---
Confidence 899999998877 2334455655443 579999999999999999987778888876 679999999999
Q ss_pred CCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcCCC-ccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeE
Q 008850 400 ANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 478 (551)
Q Consensus 400 ~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~ 478 (551)
|++|||||+|||++.+.+++.|.+||+++++||+|.. ...++..+|+++|+.|++++||+||+||++++ ++++
T Consensus 328 ---Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~---~~~~ 401 (499)
T PLN02507 328 ---TNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQA---KGDI 401 (499)
T ss_pred ---CCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhcc---CCCE
Confidence 8999999999999988999999999999999999754 34567788999999999999999999999752 6778
Q ss_pred EEEEEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 479 SVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
.+.+.+|..+.+++..+.+++|+||++|++ +++|||+|++|+++.++|+.++.+-.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~-t~~ilG~~~vg~~a~e~i~~~~~ai~ 457 (499)
T PLN02507 402 LVFTSSFNPMKNTISGRQEKTVMKLIVDAE-TDKVLGASMCGPDAPEIMQGIAVALK 457 (499)
T ss_pred EEEEeecCccccccccCCCCEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 888888988888887767789999999997 89999999999999999999877643
No 19
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.5e-63 Score=525.31 Aligned_cols=415 Identities=36% Similarity=0.611 Sum_probs=360.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..|||+||||||||++||..|+++|++|+|||++.+||+|+++||+|+|.++..+..++... ....+|+......++
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAK---KASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHH---HHHhcCccCCCCccC
Confidence 46999999999999999999999999999999999999999999999999998887766553 345677765555679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCc-------EEEe--Ccc--eEEEeCeEEEeCCCCCCCCCC
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQ-------KVKF--GTD--NIVTAKDIIIATGSVPFVPKG 248 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~v~~--~~g--~~i~~d~lVlAtG~~p~~p~~ 248 (551)
+..+.++.+...+.+.......+++.+|+++.+++.+++.+ .+.+ .++ .++.||+||||||++|..+++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~ 159 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPG 159 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCC
Confidence 99999999988888877777888889999999999988876 5544 444 579999999999999987666
Q ss_pred ccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEE
Q 008850 249 IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDY 328 (551)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~ 328 (551)
.+.++..+++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++ .||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~-~gI~i 238 (472)
T PRK05976 160 LPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKK-LGVRV 238 (472)
T ss_pred CCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHh-cCCEE
Confidence 66666668888888887778999999999999999999999999999999999999999999999999999986 89999
Q ss_pred EeceEEE-eC---CCcEE-EEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCC
Q 008850 329 HTGVFAT-KD---GKPVT-IELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGN 403 (551)
Q Consensus 329 ~~~~~~~-~~---~~~~~-v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t 403 (551)
++++.+. .+ ++.+. +.+.++ +.+++++|.|++++|++|+++.+.++..++..++|+|.||++++ |
T Consensus 239 ~~~~~v~~i~~~~~~~~~~~~~~~g----~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~------t 308 (472)
T PRK05976 239 VTGAKVLGLTLKKDGGVLIVAEHNG----EEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQ------T 308 (472)
T ss_pred EeCcEEEEEEEecCCCEEEEEEeCC----ceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcc------c
Confidence 9998876 21 33333 333333 22479999999999999999877666667666779999999999 7
Q ss_pred CCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcCCC-ccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEE
Q 008850 404 LVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAK 482 (551)
Q Consensus 404 ~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~ 482 (551)
+.|+|||+|||++.+++++.|..||+++++||+|.+ ..+++..+|.++|++|+++++|++|+||++. |+++.+.+
T Consensus 309 s~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~----g~~~~~~~ 384 (472)
T PRK05976 309 KERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEA----GYDVKVGK 384 (472)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHc----CCCEEEEE
Confidence 899999999999988999999999999999999876 5677788999999999999999999999975 99999999
Q ss_pred EecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHH
Q 008850 483 TSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 533 (551)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~ 533 (551)
++|..+.++.+.+.++||+||++|++ +++|||+|++|+.+.++|+.++.+
T Consensus 385 ~~~~~~~~~~~~~~~~g~~kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~a 434 (472)
T PRK05976 385 FPFAANGKALTYGESDGFVKVVADRD-THDILGVQAVGPHVTELISEFALA 434 (472)
T ss_pred EECCcchhhhhcCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHH
Confidence 99999999998888999999999988 899999999999999999876655
No 20
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-64 Score=474.04 Aligned_cols=415 Identities=30% Similarity=0.487 Sum_probs=369.2
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccc-cc
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQV-HA 175 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 175 (551)
...+||.+|||||.+|+++|++++..|.++.|+|.+ .+||+|++.||+|.|.||+.+.....+ +...+|||+. ..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~---~da~~yG~~~~~~ 93 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEM---EDAKDYGFPINEE 93 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHh---hhhhhcCCccccc
Confidence 345799999999999999999999999999999996 999999999999999999988776655 4567899987 56
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEe--Ccce--EEEeCeEEEeCCCCCCCCCCccC
Q 008850 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTDN--IVTAKDIIIATGSVPFVPKGIEV 251 (551)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~--~~g~--~i~~d~lVlAtG~~p~~p~~~~~ 251 (551)
..++|..+.+..+.++.++..-++..+.+.+|+++.|.+.++++..+++ .++. .+++++++||||++|.+|.+++.
T Consensus 94 ~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~ 173 (478)
T KOG0405|consen 94 GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGA 173 (478)
T ss_pred cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCch
Confidence 7899999999999999999988999999999999999999999885554 4542 48899999999999999987774
Q ss_pred CCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEec
Q 008850 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (551)
Q Consensus 252 ~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~ 331 (551)
+ .-++++.+++++..|||++|||+|++|+|+|..|+.+|.+++++.|.+.++..||+.+++.+.+.++. .||++|.+
T Consensus 174 E--~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~-~ginvh~~ 250 (478)
T KOG0405|consen 174 E--LGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEG-RGINVHKN 250 (478)
T ss_pred h--hccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhh-cceeeccc
Confidence 3 35799999999999999999999999999999999999999999999999999999999999999986 99999999
Q ss_pred eEEE---eCCCc-EEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCC
Q 008850 332 VFAT---KDGKP-VTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVP 406 (551)
Q Consensus 332 ~~~~---~~~~~-~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~ 406 (551)
+.+. +..+. ..+....+ ....+|.++||+|+.||+..|++++.|+++ ++|.|.||++.+ ||+|
T Consensus 251 s~~~~v~K~~~g~~~~i~~~~------~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~------Tnvp 318 (478)
T KOG0405|consen 251 SSVTKVIKTDDGLELVITSHG------TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQN------TNVP 318 (478)
T ss_pred ccceeeeecCCCceEEEEecc------ccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecccc------CCCC
Confidence 8776 22222 23333332 445699999999999999999999999998 899999999999 8999
Q ss_pred cEEEecCCCCCCCcHHHHHHHHHHHHHHHcC--CCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEe
Q 008850 407 HLYCIGDANGKMMLAHAASAQGISVVEQVTG--RDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTS 484 (551)
Q Consensus 407 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g--~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~ 484 (551)
+||++||+++...+..+|+.+|+..++.++| ++..++|..+|.++|++|++++|||||+||.++|++. +++++...
T Consensus 319 ~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~--~i~vy~s~ 396 (478)
T KOG0405|consen 319 SIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKG--DIKVYTSK 396 (478)
T ss_pred ceEEeccccCcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCcc--ceEEEecC
Confidence 9999999999999999999999999999997 4567899999999999999999999999999987544 46777888
Q ss_pred cccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHH
Q 008850 485 FKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 533 (551)
Q Consensus 485 ~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~ 533 (551)
|.....++...+++.++|||+... +.+++|.|+.|+.+.|++|-.+..
T Consensus 397 F~pm~~a~~~~k~kt~mKlvc~~~-~eKVvG~hm~G~~s~EilQGf~VA 444 (478)
T KOG0405|consen 397 FNPMKYAMSGRKEKTLMKLVCAGK-SEKVVGVHMCGDDSAEILQGFAVA 444 (478)
T ss_pred CchhHhHhhcCCcceEEEEEEecC-CCcEEEEEEecCCcHHHHhhhhhh
Confidence 999999999999999999999887 789999999999999999877643
No 21
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.3e-63 Score=526.45 Aligned_cols=417 Identities=25% Similarity=0.431 Sum_probs=354.3
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccc
Q 008850 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (551)
Q Consensus 97 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (551)
+...+|||+||||||||++||..|++.|++|+|||++.+||+|.|+||+|+|.++..+...+...... ..+|+.....
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~--~~~g~~~~~~ 79 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESP--FDDGLSAQAP 79 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhcc--ccCCcccCCC
Confidence 34567999999999999999999999999999999999999999999999999998877655433211 1246654455
Q ss_pred ccCHHHHHHHHHHHHHHHHHH-HHHHHHH-cCeEEEeceEEEeCCc--EEEeCcc--eEEEeCeEEEeCCCCCCCCCCcc
Q 008850 177 GYDRQGVADHANNLATKIRNN-LTNSMKA-LGVDILTGVGTILGPQ--KVKFGTD--NIVTAKDIIIATGSVPFVPKGIE 250 (551)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~v~~~~~~~~~~~~~--~v~~~~g--~~i~~d~lVlAtG~~p~~p~~~~ 250 (551)
.+++..+.++.+.....+... ....++. .+|+++.+++.+++.. .|.+.++ .+++||+||||||++|..|++++
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G 159 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPG 159 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCC
Confidence 689999998888877766543 3444544 4899999998887764 4555554 47999999999999999998887
Q ss_pred CCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEe
Q 008850 251 VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHT 330 (551)
Q Consensus 251 ~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~ 330 (551)
.+...++++++...+...+++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+++.+++ .||++++
T Consensus 160 ~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~-~GI~v~~ 237 (468)
T PRK14694 160 LAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRR-EGIEVLK 237 (468)
T ss_pred CCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHh-CCCEEEe
Confidence 76555677777777777789999999999999999999999999999986 578888999999999999987 8999999
Q ss_pred ceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCCCc
Q 008850 331 GVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPH 407 (551)
Q Consensus 331 ~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~~ 407 (551)
+..+. .+++.+.+++.+ .++++|.|++++|++||++++.++..++..++|+|.||+++| |++||
T Consensus 238 ~~~v~~i~~~~~~~~v~~~~-------~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~------Ts~~~ 304 (468)
T PRK14694 238 QTQASEVDYNGREFILETNA-------GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQ------TTVSG 304 (468)
T ss_pred CCEEEEEEEcCCEEEEEECC-------CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcc------cCCCC
Confidence 98776 233333343322 369999999999999999987767777777889999999999 89999
Q ss_pred EEEecCCCCCCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEeccc
Q 008850 408 LYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKA 487 (551)
Q Consensus 408 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~ 487 (551)
|||+|||++.+.+.+.|..||++||.||+|.+..+++..+|.++|++|++++||+||+||+++ |+++++.+++|..
T Consensus 305 IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~~ 380 (468)
T PRK14694 305 IYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQ----GYDTDSRTLDLEN 380 (468)
T ss_pred EEEEeecCCCcccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEEeeCCHHHHHHc----CCceEEEEEeccc
Confidence 999999999999999999999999999998877778889999999999999999999999975 9999999999999
Q ss_pred chhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 488 NTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 488 ~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
+.+++..+.++||+||++|++ +++|||+|++|+.+.++|+.++.+-.
T Consensus 381 ~~~~~~~~~~~g~~klv~~~~-~~~ilG~~~~g~~a~e~i~~~~~ai~ 427 (468)
T PRK14694 381 VPRALVNFDTGGFIKMVAERG-SGRLLGVQVVAGEAGELIQTAVMALR 427 (468)
T ss_pred chhhhhcCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 999998888899999999998 89999999999999999988776543
No 22
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=2.2e-63 Score=523.65 Aligned_cols=411 Identities=30% Similarity=0.473 Sum_probs=361.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccc---cccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH---AAGY 178 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~ 178 (551)
.||+|||+|++|+.+|..++++|.+|+|||+..+||+|++++|+|+|.++..+...+... ....+|+... ...+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELR---RAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHH---HHHhCCcccccCccccc
Confidence 489999999999999999999999999999988999999999999999998877665543 4556777642 4467
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEE----eCCcEEEe--Ccce--EEEeCeEEEeCCCCCCCCCCcc
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI----LGPQKVKF--GTDN--IVTAKDIIIATGSVPFVPKGIE 250 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~v~~--~~g~--~i~~d~lVlAtG~~p~~p~~~~ 250 (551)
++..+.++++...+.+...+...++..+|+++.+++.+ .+.+.+.+ .+|. ++.||+||||||+.|..|++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 158 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAE 158 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCC
Confidence 99999999999988888788888999999999999988 56666554 3454 7999999999999998777655
Q ss_pred CCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEe
Q 008850 251 VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHT 330 (551)
Q Consensus 251 ~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~ 330 (551)
..+..+++..++..+...+++++|||+|.+|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.|++ .||++++
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~-~gV~i~~ 237 (466)
T PRK07845 159 PDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFAR-RGMTVLK 237 (466)
T ss_pred CCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHH-CCcEEEc
Confidence 555668888888777778899999999999999999999999999999999999999999999999999987 8999999
Q ss_pred ceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCC
Q 008850 331 GVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVP 406 (551)
Q Consensus 331 ~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~ 406 (551)
+..+. .+++.+.+++.++ +++++|.|++++|++||++.+.+++.++.. ++|+|.||+++| |+.|
T Consensus 238 ~~~v~~v~~~~~~~~v~~~~g------~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~------Ts~~ 305 (466)
T PRK07845 238 RSRAESVERTGDGVVVTLTDG------RTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSR------TSVP 305 (466)
T ss_pred CCEEEEEEEeCCEEEEEECCC------cEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcc------cCCC
Confidence 98776 2344555666544 579999999999999999987778888876 679999999999 8999
Q ss_pred cEEEecCCCCCCCcHHHHHHHHHHHHHHHcCCC-ccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEec
Q 008850 407 HLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSF 485 (551)
Q Consensus 407 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~ 485 (551)
||||+|||++.+++++.|..||+++++||+|.. .+.++..+|+++|++|++++||+||+||++. |+++++...++
T Consensus 306 ~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~----g~~~~~~~~~~ 381 (466)
T PRK07845 306 GIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSG----EVPARTVMLPL 381 (466)
T ss_pred CEEEEeeccCCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhC----CCceEEEEEec
Confidence 999999999999999999999999999999865 4567889999999999999999999999874 89999999999
Q ss_pred ccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHH
Q 008850 486 KANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 533 (551)
Q Consensus 486 ~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~ 533 (551)
..+.|+.+.+.++||+||++|++ +++|||+|++|+++.++|+.++.+
T Consensus 382 ~~~~~~~~~~~~~g~~kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~a 428 (466)
T PRK07845 382 ATNPRAKMSGLRDGFVKLFCRPG-TGVVIGGVVVAPRASELILPIALA 428 (466)
T ss_pred ccCchhhhcCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHH
Confidence 99999998888999999999988 899999999999999999888765
No 23
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.8e-63 Score=522.56 Aligned_cols=414 Identities=29% Similarity=0.461 Sum_probs=360.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccc--ccccCH
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH--AAGYDR 180 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 180 (551)
+|+||||||||++||..|++.|++|+|||++.+||+|+|+||+|+|.++..+..++... ....+|+... ....++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVK---KANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHH---HHHhcCccccCCCCccCH
Confidence 79999999999999999999999999999999999999999999999998887766553 3455777632 345789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeC--cc-eEEEeCeEEEeCCCCCCCCCCccCCCceee
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD-NIVTAKDIIIATGSVPFVPKGIEVDGKTVI 257 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~--~g-~~i~~d~lVlAtG~~p~~p~~~~~~~~~v~ 257 (551)
..+..+.+...+++.......++..+++++.|++.+.+.+.+.+. ++ .++.||+||||||++|+.|+++++++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~ 158 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWII 158 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence 999999998888887777888888999999999999888877653 33 479999999999999988887777777788
Q ss_pred cchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE-e
Q 008850 258 TSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT-K 336 (551)
Q Consensus 258 ~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~-~ 336 (551)
+++++..+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++ .||+++++..+. .
T Consensus 159 ~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~-~GI~i~~~~~V~~i 237 (458)
T PRK06912 159 NSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLEN-DGVKIFTGAALKGL 237 (458)
T ss_pred cchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHH-CCCEEEECCEEEEE
Confidence 99888888888999999999999999999999999999999999999999999999999999987 899999998876 2
Q ss_pred CCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCCCcEEEecCCCC
Q 008850 337 DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANG 416 (551)
Q Consensus 337 ~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~ 416 (551)
+.+...+.+.+. ++..++++|.|++|+|++|+++.+.++..++..++++|.||+++| |+.|||||+|||++
T Consensus 238 ~~~~~~v~~~~~---g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~------ts~~~VyA~GD~~~ 308 (458)
T PRK06912 238 NSYKKQALFEYE---GSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQ------TNVPHIYACGDVIG 308 (458)
T ss_pred EEcCCEEEEEEC---CceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCee------cCCCCEEEEeecCC
Confidence 211112333221 122479999999999999999877777777776444499999999 88999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhhhhcCC
Q 008850 417 KMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENE 496 (551)
Q Consensus 417 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (551)
.+++++.|..||++||.||+|.+..+++..+|.++|++|++++||+||+||+++ |+++++.+.+|..+.+++..+.
T Consensus 309 ~~~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~~~~~~~~~~~ 384 (458)
T PRK06912 309 GIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQ----YGDIRIGEFPFTANGKALIIGE 384 (458)
T ss_pred CcccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEeeCCHHHHHHC----CCCeEEEEEecCcchhHhhcCC
Confidence 899999999999999999999776777888999999999999999999999875 8899999989999999998888
Q ss_pred CceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHh
Q 008850 497 GEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 534 (551)
Q Consensus 497 ~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~ 534 (551)
++||+||++|++ +++|||+|++|+.+.++|+.++.+-
T Consensus 385 ~~g~~kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~ai 421 (458)
T PRK06912 385 QTGKVKVIVEPK-YQEIVGISIIGPRATELIGQGTVMI 421 (458)
T ss_pred CceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHH
Confidence 999999999998 8999999999999999999876653
No 24
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.4e-63 Score=523.03 Aligned_cols=419 Identities=36% Similarity=0.600 Sum_probs=365.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-------CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQ 172 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-------~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~ 172 (551)
..|||+||||||||++||+.+++.|.+|+|||+ ..+||+|.+.+|+|+|.++..+..+.... +.+..+|+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~--~~~~~~G~~ 80 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAG--HHFADHGIH 80 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHH--hhHHhcCcc
Confidence 359999999999999999999999999999998 78999999999999999988877655442 223567776
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeC----CcEEEeC--cceEEEeCeEEEeCCCCCCCC
Q 008850 173 VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFG--TDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~v~~~--~g~~i~~d~lVlAtG~~p~~p 246 (551)
.....+++..+.++.+...+.+...+...++..+|+++.+++.+++ .++|.+. ++.+++||+||||||+.|+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~ 160 (475)
T PRK06327 81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHL 160 (475)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCC
Confidence 5555789999999999888888888888888899999999998877 6778764 345899999999999999876
Q ss_pred CCccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCce
Q 008850 247 KGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKI 326 (551)
Q Consensus 247 ~~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi 326 (551)
++.+.++..+++++++..+...|++++|||+|++|+|+|..|++.|.+|+++++++.+++.+++++.+.+.+.+++ .||
T Consensus 161 p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~gi 239 (475)
T PRK06327 161 PGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTK-QGL 239 (475)
T ss_pred CCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHH-cCc
Confidence 6666666678888888888778999999999999999999999999999999999999999999999999999986 899
Q ss_pred EEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008850 327 DYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 402 (551)
Q Consensus 327 ~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~ 402 (551)
+++++..+. .+++.+.+++.++ +++.+++++|.|++++|++|+++.+.++..++.. ++|+|.||+++|
T Consensus 240 ~i~~~~~v~~i~~~~~~v~v~~~~~--~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~------ 311 (475)
T PRK06327 240 DIHLGVKIGEIKTGGKGVSVAYTDA--DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCR------ 311 (475)
T ss_pred EEEeCcEEEEEEEcCCEEEEEEEeC--CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCc------
Confidence 999998776 3344456666543 1222579999999999999999977667777776 779999999999
Q ss_pred CCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEE
Q 008850 403 NLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAK 482 (551)
Q Consensus 403 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~ 482 (551)
|+.|||||+|||++.+++++.|..||+++|+||+|+...+++..+|+++|++|++++||+||+||++. |+++.+..
T Consensus 312 Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~----g~~~~~~~ 387 (475)
T PRK06327 312 TNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAE----GVEYKAGK 387 (475)
T ss_pred cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHc----CCCEEEEE
Confidence 89999999999999889999999999999999998776677888999999999999999999999875 99999999
Q ss_pred EecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHh
Q 008850 483 TSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 534 (551)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~ 534 (551)
++|..+.++.+.+.++||+||++|++ +++|||+|++|+++.++|+.++.+.
T Consensus 388 ~~~~~~~~~~~~~~~~g~~klv~d~~-~~~ilG~~~~g~~a~e~i~~~~~ai 438 (475)
T PRK06327 388 FPFMANGRALAMGEPDGFVKIIADAK-TDEILGVHVIGPNASELIAEAVVAM 438 (475)
T ss_pred EcccccchhhhcCCCCeEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999998888899999999998 8999999999999999998887653
No 25
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.3e-63 Score=521.96 Aligned_cols=417 Identities=34% Similarity=0.513 Sum_probs=354.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
+|||+||||||||++||..|++.|++|+|||++.+||+|.+.+|+|+|.++..+...+.+. .....+|+. ....+++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~--~~~~~~gi~-~~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFT--KEAKTFGIS-GEVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHH--HHHHhcCCC-cCcccCH
Confidence 5899999999999999999999999999999999999999999999999987766555443 123456665 3345788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeC--cc--eEEEeCeEEEeCCCCCCCCCCccCCCcee
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~--~g--~~i~~d~lVlAtG~~p~~p~~~~~~~~~v 256 (551)
..+..+.+...+++.......++..+|+.+.+.+.+.+.+++.+. ++ .++.||+||||||+.|..|++.+..+ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~-~v 159 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSE-NV 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCC-cE
Confidence 888888888887777666667777899999999999888877653 33 47999999999999998776543322 46
Q ss_pred ecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE-
Q 008850 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT- 335 (551)
Q Consensus 257 ~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~- 335 (551)
++.++.......|++++|||+|++|+|+|..|++.|.+|+++++.+++++.+|+++++.+.+.+++ .||++++++.+.
T Consensus 160 ~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~-~gV~i~~~~~v~~ 238 (466)
T PRK07818 160 VTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKK-LGVKILTGTKVES 238 (466)
T ss_pred EchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHH-CCCEEEECCEEEE
Confidence 666665555567899999999999999999999999999999999999999999999999999987 899999998877
Q ss_pred --eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEec
Q 008850 336 --KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIG 412 (551)
Q Consensus 336 --~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~G 412 (551)
.+++.+.+++.. .+++.+++++|.|++++|++||++.+.+++.++.. ++|+|.||+++| |+.|||||+|
T Consensus 239 i~~~~~~~~v~~~~--~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~------Ts~p~IyAiG 310 (466)
T PRK07818 239 IDDNGSKVTVTVSK--KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMR------TNVPHIYAIG 310 (466)
T ss_pred EEEeCCeEEEEEEe--cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcc------cCCCCEEEEe
Confidence 333344455541 01222479999999999999999987778888876 778999999999 8999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCc-cC-CCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchh
Q 008850 413 DANGKMMLAHAASAQGISVVEQVTGRDH-VL-NHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 490 (551)
Q Consensus 413 D~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~-~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 490 (551)
||++.+++++.|..||++||+||+|.+. .. ++..+|.++|++|++++||+||+||+++ |+++++..++|..+.|
T Consensus 311 D~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~~~~~ 386 (466)
T PRK07818 311 DVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREE----GYDVKVAKFPFTANGK 386 (466)
T ss_pred ecCCCcccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhC----CCcEEEEEEECCccch
Confidence 9999889999999999999999998653 34 7888999999999999999999999975 9999999999999999
Q ss_pred hhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 491 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 491 ~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
+...+.++||+||++|++ +++|||+|++|+.+.++|+.++.+-.
T Consensus 387 ~~~~~~~~g~~Klv~~~~-~~~ilG~~~vg~~a~e~i~~~~~ai~ 430 (466)
T PRK07818 387 AHGLGDPTGFVKLVADAK-YGELLGGHLIGPDVSELLPELTLAQK 430 (466)
T ss_pred hhhcCCCCeEEEEEEECC-CCeEEEEEEECCCHHHHHHHHHHHHH
Confidence 998888999999999988 89999999999999999998866543
No 26
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.4e-63 Score=520.53 Aligned_cols=415 Identities=34% Similarity=0.521 Sum_probs=357.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
.+|||+||||||||++||..|++.|++|+|||++.+||+|.+++|+|+|.+++.+..+.... +...+|+......++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~---~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAK---HAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCccccceeccceeeHHHHHHHHHHHHHHH---HHHhcCCCcCCCccC
Confidence 35999999999999999999999999999999988999999999999999998887666543 345667665445679
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCC-CCCCCCccCCCceee
Q 008850 180 RQGVADHANNLATKIRNNL-TNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~ 257 (551)
+..+.++.+.....+...+ ...++..+++++.+.+.+.+.+.+.+ ++.++.||+||||||+. |.+|+.....+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~ 157 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLL 157 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEE
Confidence 9999999888887776665 55667789999999988888888877 55789999999999999 666654333455678
Q ss_pred cchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE--
Q 008850 258 TSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT-- 335 (551)
Q Consensus 258 ~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~-- 335 (551)
++++.+.+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+|+++.+.+++.+++ . |+++++..+.
T Consensus 158 ~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~-I~i~~~~~v~~i 235 (460)
T PRK06292 158 TSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSK-E-FKIKLGAKVTSV 235 (460)
T ss_pred CchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhh-c-cEEEcCCEEEEE
Confidence 88888888888999999999999999999999999999999999999999999999999999987 7 9999998876
Q ss_pred -eCCC-cEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEec
Q 008850 336 -KDGK-PVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIG 412 (551)
Q Consensus 336 -~~~~-~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~G 412 (551)
.+++ .+.+++.++ +.+++++|.|++++|++||++.+.++..++.. ++|+|.||+++| |+.|||||+|
T Consensus 236 ~~~~~~~v~~~~~~~----~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~------ts~~~IyA~G 305 (460)
T PRK06292 236 EKSGDEKVEELEKGG----KTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQ------TSVPGIYAAG 305 (460)
T ss_pred EEcCCceEEEEEcCC----ceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcc------cCCCCEEEEE
Confidence 2222 233332222 23579999999999999999987777888876 689999999999 8999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCC-CccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhh
Q 008850 413 DANGKMMLAHAASAQGISVVEQVTGR-DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKA 491 (551)
Q Consensus 413 D~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~ 491 (551)
||++.+++++.|..||++||.||++. ....++..+|+++|++|++++||+||+||++. |+++++..++|+.+.|+
T Consensus 306 D~~~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~----g~~~~~~~~~~~~~~~~ 381 (460)
T PRK06292 306 DVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAA----GIDYVVGEVPFEAQGRA 381 (460)
T ss_pred ecCCCccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhc----CCCeEEEEEecccchHH
Confidence 99998899999999999999999984 45567788999999999999999999999874 99999999999999999
Q ss_pred hhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 492 LAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 492 ~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
...+.++||+||++|++ +++|||+|++|+++.++|+.++.+..
T Consensus 382 ~~~~~~~g~~klv~d~~-~~~ilG~~~vg~~a~e~i~~~~~ai~ 424 (460)
T PRK06292 382 RVMGKNDGFVKVYADKK-TGRLLGAHIIGPDAEHLIHLLAWAMQ 424 (460)
T ss_pred HhcCCCCeEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 98888999999999988 89999999999999999988766544
No 27
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.7e-62 Score=516.78 Aligned_cols=417 Identities=25% Similarity=0.379 Sum_probs=354.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC---------ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD---------VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGL 171 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~---------~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~ 171 (551)
+|||+|||+||+|+.+|..+++.|.+|+|||+. .+||+|+|+||+|+|.++..+...+... +...+|+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~---~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALK---DSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHh---hhhhcCc
Confidence 489999999999999999999999999999972 5899999999999999999887766543 3455677
Q ss_pred cccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeC--cc--eEEEeCeEEEeCCCCCCCC
Q 008850 172 QVHA-AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 172 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~--~g--~~i~~d~lVlAtG~~p~~p 246 (551)
.... ..++|..+.++.+..+..+.......++..+|+++.|.+.+.+.++|.+. ++ .++.||+||||||++|+.|
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p 158 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYP 158 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCC
Confidence 6444 46899999999999999988888888999999999999999999888764 22 4799999999999999988
Q ss_pred CCccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCce
Q 008850 247 KGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKI 326 (551)
Q Consensus 247 ~~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi 326 (551)
++++... ..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++ +.+++.+|+++++.+++.|++ .||
T Consensus 159 ~ipG~~~-~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~-~gV 235 (484)
T TIGR01438 159 GIPGAKE-LCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEE-HGV 235 (484)
T ss_pred CCCCccc-eeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHH-cCC
Confidence 8776532 3567788887777889999999999999999999999999999997 578899999999999999987 899
Q ss_pred EEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccC--CCceeeCCCCccccCC
Q 008850 327 DYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQ--RGFVPVDERMRVIDAN 401 (551)
Q Consensus 327 ~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~--~G~i~Vd~~~~~~~~~ 401 (551)
+++++..+. ..++...+++.++. ..+++++|.|++++|++||++.+.+++.++..+ +|+|.||+++|
T Consensus 236 ~i~~~~~v~~v~~~~~~~~v~~~~~~---~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~----- 307 (484)
T TIGR01438 236 KFKRQFVPIKVEQIEAKVKVTFTDST---NGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQ----- 307 (484)
T ss_pred EEEeCceEEEEEEcCCeEEEEEecCC---cceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcc-----
Confidence 999998655 33344556665531 124799999999999999999888888888763 48999999999
Q ss_pred CCCCCcEEEecCCCC-CCCcHHHHHHHHHHHHHHHcCCC-ccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCC-eE
Q 008850 402 GNLVPHLYCIGDANG-KMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGF-EV 478 (551)
Q Consensus 402 ~t~~~~IyA~GD~~~-~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~-~~ 478 (551)
|+.|+|||+|||+. .+++++.|.+||+++|+||++.. ...++..+|+++|++|++++||+||+||++++ ++ .+
T Consensus 308 -Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~---g~~~~ 383 (484)
T TIGR01438 308 -TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKF---GEENI 383 (484)
T ss_pred -cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhc---CCCcE
Confidence 89999999999996 57899999999999999999744 34677889999999999999999999999752 44 57
Q ss_pred EEEEEecccchhhhhcCC--CceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 479 SVAKTSFKANTKALAENE--GEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~--~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
++...+|..+.+++...+ +++|+||++++..+++|||+|++|+++.++|+.++.+..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~ 442 (484)
T TIGR01438 384 EVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALR 442 (484)
T ss_pred EEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHH
Confidence 777888988888877654 679999999643379999999999999999988876644
No 28
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.1e-62 Score=517.84 Aligned_cols=412 Identities=27% Similarity=0.395 Sum_probs=350.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
.+|||+|||+||||+++|..|+++|.+|+|||+ +.+||+|+++||+|+|.+++.+...+.... ...+|+....+.+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~---~~~~g~~~~~~~~ 91 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRS---NPFDGVEAVAPSI 91 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhh---ccccCcccCCCcc
Confidence 458999999999999999999999999999999 599999999999999999988776654432 2335665545567
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHc-CeEEEeceEEEeCCcEEEe--Ccc--eEEEeCeEEEeCCCCCCCCCCccCC
Q 008850 179 DRQGVADHANNLATKIRNN-LTNSMKAL-GVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVD 252 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~v~~--~~g--~~i~~d~lVlAtG~~p~~p~~~~~~ 252 (551)
++..+..+......++... +...++.. +|+++.|.+.+.+.+.+.+ .++ .++.||+||||||+.|..|++++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~ 171 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM 171 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcC
Confidence 8888888887777666432 44555544 8999999999988876655 344 3699999999999999999887765
Q ss_pred CceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEece
Q 008850 253 GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGV 332 (551)
Q Consensus 253 ~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~ 332 (551)
...+++..+.+.....|++++|||+|++|+|+|..|.+.|.+|+++++. ++++.+|+++.+.+.+.+++ .||+++++.
T Consensus 172 ~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~-~GV~i~~~~ 249 (479)
T PRK14727 172 DTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEK-EGIEVLNNT 249 (479)
T ss_pred ccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHh-CCCEEEcCc
Confidence 5455666666555667899999999999999999999999999999874 68888999999999999987 899999998
Q ss_pred EEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcE
Q 008850 333 FAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHL 408 (551)
Q Consensus 333 ~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~I 408 (551)
.+. .+++.+.+...+ .++++|.|++++|+.||++.+.++..++.. ++|+|.||+++| |++|||
T Consensus 250 ~V~~i~~~~~~~~v~~~~-------g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~------Ts~~~I 316 (479)
T PRK14727 250 QASLVEHDDNGFVLTTGH-------GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAME------TSAPDI 316 (479)
T ss_pred EEEEEEEeCCEEEEEEcC-------CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCee------cCCCCE
Confidence 776 233444444322 358999999999999999987777788876 678999999999 899999
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccc
Q 008850 409 YCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKAN 488 (551)
Q Consensus 409 yA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~ 488 (551)
||+|||++.+.+++.|..||++||.||+|.+..+++..+|.++|++|++++||+||+||++. |+++++..+++..+
T Consensus 317 yA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~----g~~~~~~~~~~~~~ 392 (479)
T PRK14727 317 YAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLS----GIETISRVLTMENV 392 (479)
T ss_pred EEeeecCCcchhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceeeeeCCHHHHHHc----CCceEEEEEEcccC
Confidence 99999999999999999999999999999877788888999999999999999999999975 99999999999999
Q ss_pred hhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHh
Q 008850 489 TKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 534 (551)
Q Consensus 489 ~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~ 534 (551)
.+++..+.++||+||++|++ +++|||+|++|+.+.++|+.++.+.
T Consensus 393 ~~~~~~~~~~g~~Kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~ai 437 (479)
T PRK14727 393 PRALANFETDGFIKLVAEEG-TRKLIGAQILAHEGGELIQSAALAI 437 (479)
T ss_pred chhhhcCCCCeEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHH
Confidence 99988778899999999988 8999999999999999888776553
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=9e-62 Score=525.31 Aligned_cols=415 Identities=27% Similarity=0.414 Sum_probs=351.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..|||+||||||||++||..|++.|++|+|||++.+||+|+|+||+|+|.++..+.......... .++|+....+..+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~--~~~g~~~~~~~~~ 174 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESP--FDGGIAATVPTID 174 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhccc--ccCCccCCCCccC
Confidence 36999999999999999999999999999999999999999999999999998877655443211 0146654455678
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHc-CeEEEeceEEEeCCcEEEe--Ccc--eEEEeCeEEEeCCCCCCCCCCccCCC
Q 008850 180 RQGVADHANNLATKIRNN-LTNSMKAL-GVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVDG 253 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~v~~--~~g--~~i~~d~lVlAtG~~p~~p~~~~~~~ 253 (551)
+..+.++.+....++... +...+... +|+++.+++.+.+.+.+.+ .++ .++.||+||||||++|..|++++.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~ 254 (561)
T PRK13748 175 RSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKE 254 (561)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCc
Confidence 999988888777766542 44455555 8999999999888776654 344 36999999999999999998877665
Q ss_pred ceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceE
Q 008850 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (551)
Q Consensus 254 ~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~ 333 (551)
..+++..+.+.....+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+|+++++.+.+.+++ .||+++++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~-~gI~i~~~~~ 332 (561)
T PRK13748 255 TPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRA-EGIEVLEHTQ 332 (561)
T ss_pred cceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHH-CCCEEEcCCE
Confidence 556666666666667899999999999999999999999999999985 57778999999999999987 8999999987
Q ss_pred EE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEE
Q 008850 334 AT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLY 409 (551)
Q Consensus 334 ~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~Iy 409 (551)
+. .+++.+.+...+ .++++|.|++++|++||++.+.+++.++.. ++|+|.||+++| |++||||
T Consensus 333 v~~i~~~~~~~~v~~~~-------~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~------Ts~~~Iy 399 (561)
T PRK13748 333 ASQVAHVDGEFVLTTGH-------GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMR------TSVPHIY 399 (561)
T ss_pred EEEEEecCCEEEEEecC-------CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcc------cCCCCEE
Confidence 76 233333444322 369999999999999999987778888876 678999999999 8999999
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccch
Q 008850 410 CIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANT 489 (551)
Q Consensus 410 A~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 489 (551)
|+|||++.+.+++.|..||++||.||+|.+..+++..+|.++|++|++++||+||+||+++ |+++.+.++++..+.
T Consensus 400 A~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~~~~ 475 (561)
T PRK13748 400 AAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHD----GIETDSRTLTLDNVP 475 (561)
T ss_pred EeeecCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCceeeeCCHHHHHHc----CCCeEEEEEecccCc
Confidence 9999999999999999999999999998877788888999999999999999999999975 899999999999999
Q ss_pred hhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhhh
Q 008850 490 KALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMT 536 (551)
Q Consensus 490 ~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~~ 536 (551)
+++..+.++||+||++|++ +++|||+|++|+.+.++|+.++.+...
T Consensus 476 ~~~~~~~~~g~~kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~ai~~ 521 (561)
T PRK13748 476 RALANFDTRGFIKLVIEEG-SGRLIGVQAVAPEAGELIQTAALAIRN 521 (561)
T ss_pred hhhhcCCCCeEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence 9988878899999999987 899999999999999999887666443
No 30
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.9e-61 Score=504.15 Aligned_cols=396 Identities=26% Similarity=0.435 Sum_probs=334.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC--ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~--~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
.|||+||||||||++||..|+++|++|+|||+. .+||+|.+.+|+|+|.++..... ..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~--------------------~~ 62 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ--------------------HT 62 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhcc--------------------CC
Confidence 589999999999999999999999999999984 58999999999999987654320 24
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHcCeEEEeceEEEeCCcEEEe--Ccce-EEEeCeEEEeCCCCCCCCCCccCC-C
Q 008850 179 DRQGVADHANNLATKIRNNLTNSM-KALGVDILTGVGTILGPQKVKF--GTDN-IVTAKDIIIATGSVPFVPKGIEVD-G 253 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~v~~--~~g~-~i~~d~lVlAtG~~p~~p~~~~~~-~ 253 (551)
++.....+.+.....+.......+ +..+++++.+++.+++.+.+.+ .++. ++.||+||||||++|..|++++.+ .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~ 142 (441)
T PRK08010 63 DFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTT 142 (441)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCC
Confidence 555555555555444433333333 3349999999988887765544 4553 699999999999999988877753 2
Q ss_pred ceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceE
Q 008850 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (551)
Q Consensus 254 ~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~ 333 (551)
..+++++++..+...+++++|||+|++|+|+|..|.+.|.+|+++++++.+++.+++++.+.+.+.+++ .||+++++..
T Consensus 143 ~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~-~gV~v~~~~~ 221 (441)
T PRK08010 143 PGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRD-QGVDIILNAH 221 (441)
T ss_pred CCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHh-CCCEEEeCCE
Confidence 457888888877778999999999999999999999999999999999999999999999999999987 8999999987
Q ss_pred EE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEE
Q 008850 334 AT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLY 409 (551)
Q Consensus 334 ~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~Iy 409 (551)
+. .+++.+.++..+ .++++|.|++|+|++||++.+.++..++.. ++|+|.||+++| |++||||
T Consensus 222 v~~i~~~~~~v~v~~~~-------g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~------Ts~~~Iy 288 (441)
T PRK08010 222 VERISHHENQVQVHSEH-------AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLH------TTADNIW 288 (441)
T ss_pred EEEEEEcCCEEEEEEcC-------CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcc------cCCCCEE
Confidence 76 233334444322 258999999999999999987667778876 679999999999 8999999
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHHHcCC-Cc-cCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEeccc
Q 008850 410 CIGDANGKMMLAHAASAQGISVVEQVTGR-DH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKA 487 (551)
Q Consensus 410 A~GD~~~~~~~~~~A~~~g~~aa~~i~g~-~~-~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~ 487 (551)
|+|||++.+++++.|..||+++++||+|+ .. ..++..+|.++|++|++++||+||+||++. |+++++..+++..
T Consensus 289 A~GD~~~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~----g~~~~~~~~~~~~ 364 (441)
T PRK08010 289 AMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARES----GADIQVVTLPVAA 364 (441)
T ss_pred EeeecCCCccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHc----CCCeEEEEEecCc
Confidence 99999999999999999999999999985 32 346778999999999999999999999975 9999999999999
Q ss_pred chhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 488 NTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 488 ~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
++++.+.+.++||+||++|++ +++|||+|++|+++.++|+.++.+-.
T Consensus 365 ~~~~~~~~~~~g~~kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~ai~ 411 (441)
T PRK08010 365 IPRARVMNDTRGVLKAIVDNK-TQRILGASLLCVDSHEMINIVKMVMD 411 (441)
T ss_pred ChhhhhcCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 999999888999999999998 89999999999999999998877643
No 31
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.8e-60 Score=502.36 Aligned_cols=414 Identities=25% Similarity=0.368 Sum_probs=344.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC---------ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD---------VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALG 170 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~---------~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g 170 (551)
.+|||+||||||||++||..|+++|++|+|||+. .+||+|++++|+|+|.+++.+...+.... ....+|
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~--~~~~~g 81 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHH--DSQMYG 81 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHh--HHhcCC
Confidence 3589999999999999999999999999999962 48999999999999999888776654431 223467
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCc---ceEEEeCeEEEeCCCCCCCCC
Q 008850 171 LQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT---DNIVTAKDIIIATGSVPFVPK 247 (551)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~---g~~i~~d~lVlAtG~~p~~p~ 247 (551)
+.... ..++..+.+++...+..+...+...++..+|+++.+.+.+.+.++|.+.+ +.++.||+||||||+.|..|+
T Consensus 82 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~ 160 (499)
T PTZ00052 82 WKTSS-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPE 160 (499)
T ss_pred CCCCC-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCC
Confidence 75433 68999999999998888877777777888999999999998888887643 357999999999999998875
Q ss_pred -CccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCce
Q 008850 248 -GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKI 326 (551)
Q Consensus 248 -~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi 326 (551)
+++... ..+++++++.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++.+|+++++.+.+.+++ .||
T Consensus 161 ~i~G~~~-~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~l~~-~GV 237 (499)
T PTZ00052 161 DVPGAKE-YSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIPLRGFDRQCSEKVVEYMKE-QGT 237 (499)
T ss_pred CCCCccc-eeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc-CcccccCCHHHHHHHHHHHHH-cCC
Confidence 554332 3567788877777889999999999999999999999999999987 467788999999999999987 899
Q ss_pred EEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008850 327 DYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 402 (551)
Q Consensus 327 ~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~ 402 (551)
+++.+..+. ..++...+++.++ +++++|.|++++|++||++++.++..++.. ++|++.+++. +
T Consensus 238 ~i~~~~~v~~v~~~~~~~~v~~~~g------~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~------ 304 (499)
T PTZ00052 238 LFLEGVVPINIEKMDDKIKVLFSDG------TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-C------ 304 (499)
T ss_pred EEEcCCeEEEEEEcCCeEEEEECCC------CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-c------
Confidence 999998765 2233455666554 568999999999999999988777888876 6788777776 7
Q ss_pred CCCCcEEEecCCCC-CCCcHHHHHHHHHHHHHHHcCCCc-cCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcC-CeEE
Q 008850 403 NLVPHLYCIGDANG-KMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEG-FEVS 479 (551)
Q Consensus 403 t~~~~IyA~GD~~~-~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~-~~~~ 479 (551)
|+.|+|||+|||+. .+++++.|.+||+++|+||++... ..++..+|+++|++|++++||+||+||++++ + ++++
T Consensus 305 Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~---~~~~~~ 381 (499)
T PTZ00052 305 TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKY---GEDDIE 381 (499)
T ss_pred CCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhc---CCCCEE
Confidence 89999999999984 678999999999999999998643 4678889999999999999999999999752 4 4688
Q ss_pred EEEEecccchhhhhcC---------------CCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 480 VAKTSFKANTKALAEN---------------EGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 480 ~~~~~~~~~~~~~~~~---------------~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
+...+|..+.++.... .++||+||++|++.+++|||+|++|+.|.|+|+.++..-.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~ 452 (499)
T PTZ00052 382 EYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALK 452 (499)
T ss_pred EEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 8888887655543322 2689999999974379999999999999999999977643
No 32
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=3.6e-60 Score=497.18 Aligned_cols=397 Identities=29% Similarity=0.458 Sum_probs=342.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc--cCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV--VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~--~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
+|||+||||||||++||..|+++|++|+|||+.. +||+|.+.+|+|+|.++..+.. ..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--------------------~~ 62 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK--------------------NL 62 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc--------------------CC
Confidence 5899999999999999999999999999999953 7999999999999998765531 24
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCc---ceEEEeCeEEEeCCCCCCCCCCccCC-Cc
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT---DNIVTAKDIIIATGSVPFVPKGIEVD-GK 254 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~---g~~i~~d~lVlAtG~~p~~p~~~~~~-~~ 254 (551)
++..+..+.+....++.......+.+.+|+++.+++.+.+.++|.+.. ..++.||+||||||++|+.|++++.. ..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~ 142 (438)
T PRK07251 63 SFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSK 142 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCC
Confidence 667777777766777766666777888999999999888888887643 34799999999999999988877753 34
Q ss_pred eeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEE
Q 008850 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (551)
Q Consensus 255 ~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~ 334 (551)
.++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++ .||+++++..+
T Consensus 143 ~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~-~GI~i~~~~~V 221 (438)
T PRK07251 143 HVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEE-DGITFLLNAHT 221 (438)
T ss_pred cEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHH-cCCEEEcCCEE
Confidence 67888888888778999999999999999999999999999999999999999999999999998886 89999999877
Q ss_pred E---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEE
Q 008850 335 T---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYC 410 (551)
Q Consensus 335 ~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA 410 (551)
. .+++.+.+. .++ +++++|.+++|+|++|+++.+++++.++.. ++|+|.||+++| |+.|||||
T Consensus 222 ~~i~~~~~~v~v~-~~g------~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~------t~~~~Iya 288 (438)
T PRK07251 222 TEVKNDGDQVLVV-TED------ETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQ------TSVPGVFA 288 (438)
T ss_pred EEEEecCCEEEEE-ECC------eEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcc------cCCCCEEE
Confidence 6 223333333 222 579999999999999999987777777765 678999999999 89999999
Q ss_pred ecCCCCCCCcHHHHHHHHHHHHHHHcCCCc--cCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccc
Q 008850 411 IGDANGKMMLAHAASAQGISVVEQVTGRDH--VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKAN 488 (551)
Q Consensus 411 ~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~ 488 (551)
+|||++.+++.+.|..||++++.++++.+. ..++..+|+++|++|+++++|+||+||++. |+++.+.++++...
T Consensus 289 iGD~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~----g~~~~~~~~~~~~~ 364 (438)
T PRK07251 289 VGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEA----GLPYAVKELLVAAM 364 (438)
T ss_pred eeecCCCcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhc----CCCeEEEEEECCcc
Confidence 999999999999999999999999997643 235668999999999999999999999975 99999999999999
Q ss_pred hhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhhh
Q 008850 489 TKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMT 536 (551)
Q Consensus 489 ~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~~ 536 (551)
+++...++.+||+||++|++ +++|||+|++|+.+.++|+.++.+-..
T Consensus 365 ~~~~~~~~~~g~~kli~d~~-~~~ilG~~~~g~~a~e~i~~~~~ai~~ 411 (438)
T PRK07251 365 PRAHVNNDLRGAFKVVVNTE-TKEILGATLFGEGSQEIINLITMAMDN 411 (438)
T ss_pred hhhhhcCCCcEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence 99988888899999999988 899999999999999999998776443
No 33
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.1e-59 Score=497.68 Aligned_cols=415 Identities=38% Similarity=0.621 Sum_probs=361.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
|||+||||||||++||.+|++.|++|+|||++.+||+|.+.+|+|+|.++..+..++.+. ....+|+......+++.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~---~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIK---HAKDYGIEVENVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHH---HHHhcCCCCCCCcCCHH
Confidence 899999999999999999999999999999988999999999999999988877766554 24566776555568899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCc--c-eEEEeCeEEEeCCCCCCCCCCc-cCCCceee
Q 008850 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT--D-NIVTAKDIIIATGSVPFVPKGI-EVDGKTVI 257 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~--g-~~i~~d~lVlAtG~~p~~p~~~-~~~~~~v~ 257 (551)
.+.++.+...+++...+...++..+|+++.+++.+.+.+.+.+.. + .++.||+||||||+.|+.|+++ +..+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~ 158 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVI 158 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEE
Confidence 998888888888887788888889999999999888877766542 2 4799999999999999988774 55555688
Q ss_pred cchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE--
Q 008850 258 TSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT-- 335 (551)
Q Consensus 258 ~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~-- 335 (551)
++++...+...+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++ .||+++.+..+.
T Consensus 159 ~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~-~gi~i~~~~~v~~i 237 (461)
T TIGR01350 159 TSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKK-KGVKILTNTKVTAV 237 (461)
T ss_pred cchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHH-cCCEEEeCCEEEEE
Confidence 88888887778999999999999999999999999999999999999999999999999999987 899999998776
Q ss_pred -eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEecC
Q 008850 336 -KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGD 413 (551)
Q Consensus 336 -~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD 413 (551)
.+++.+.+++.++ ...++++|.+++|+|++|+++.+.++..++.. .+|+|.||+++| |+.|+|||+||
T Consensus 238 ~~~~~~v~v~~~~g----~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~------t~~~~IyaiGD 307 (461)
T TIGR01350 238 EKNDDQVVYENKGG----ETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMR------TNVPGIYAIGD 307 (461)
T ss_pred EEeCCEEEEEEeCC----cEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcc------cCCCCEEEeee
Confidence 3334455554433 12479999999999999999865567777776 678999999999 88999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCc-cCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhhh
Q 008850 414 ANGKMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKAL 492 (551)
Q Consensus 414 ~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (551)
|++.+++++.|..||+++|+||.++.. .+++..+|.++|++|+++++|++|++|+++ |+++++.+.+|....++.
T Consensus 308 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~----g~~~~~~~~~~~~~~~~~ 383 (461)
T TIGR01350 308 VIGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEA----GYDVKIGKFPFAANGKAL 383 (461)
T ss_pred cCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhC----CCCeEEEEEeCccchHHH
Confidence 999889999999999999999998765 677888999999999999999999999975 999999999999999998
Q ss_pred hcCCCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHHhh
Q 008850 493 AENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 535 (551)
Q Consensus 493 ~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~~~ 535 (551)
+.+.++||+||++|++ +++|||+|++|+++.++|+.++.+..
T Consensus 384 ~~~~~~g~~kl~~~~~-~~~ilG~~~~g~~a~e~i~~~~~ai~ 425 (461)
T TIGR01350 384 ALGETDGFVKIIADKK-TGEILGAHIIGPHATELISEAVLAME 425 (461)
T ss_pred hcCCCceEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 8888899999999987 89999999999999998887765543
No 34
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-56 Score=415.76 Aligned_cols=421 Identities=27% Similarity=0.412 Sum_probs=353.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC--C-------ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhh
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG--D-------VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA 168 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~--~-------~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
.+.+||++|||||.+||+||.++++.|.+|.++|- + -+||+|.|.||+|.|.|...+-.-+.+ ++...
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al---~da~k 92 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEAL---HDARK 92 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHH---HHHHh
Confidence 34679999999999999999999999999999993 2 279999999999999887665544443 45677
Q ss_pred cCccccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCc----ceEEEeCeEEEeCCCC
Q 008850 169 LGLQVHA--AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT----DNIVTAKDIIIATGSV 242 (551)
Q Consensus 169 ~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~----g~~i~~d~lVlAtG~~ 242 (551)
|||+... ...+|..+.+..++.+..++..++-.+++..|+++.....|++++++...+ .+.++++.+|||||.+
T Consensus 93 yGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~R 172 (503)
T KOG4716|consen 93 YGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLR 172 (503)
T ss_pred hCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCC
Confidence 8998665 467899888887777777766666677778899999999999998876532 3568999999999999
Q ss_pred CCCCCCccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhC
Q 008850 243 PFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLIN 322 (551)
Q Consensus 243 p~~p~~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~ 322 (551)
|+.|++++.. ...+++++++.+...|.+.+|||+|++++|+|.+|+..|.+||+..|+ -++.+||.++++.+.+.+++
T Consensus 173 PrYp~IpG~~-Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~ 250 (503)
T KOG4716|consen 173 PRYPDIPGAK-EYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEE 250 (503)
T ss_pred CCCCCCCCce-eeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecccccHHHHHHHHHHHHH
Confidence 9999988743 356899999999999999999999999999999999999999999976 57889999999999999997
Q ss_pred CCceEEEeceEEE----eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc--CCCceeeCCCCc
Q 008850 323 PRKIDYHTGVFAT----KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT--QRGFVPVDERMR 396 (551)
Q Consensus 323 ~~gi~~~~~~~~~----~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~--~~G~i~Vd~~~~ 396 (551)
+||++....... .+++...|...+..++ +..+-++|.|+||+|+.++++.+++++.|+.. ..|.|.||+.-+
T Consensus 251 -~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~-~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~ 328 (503)
T KOG4716|consen 251 -RGIKFLRKTVPERVEQIDDGKLRVFYKNTNTG-EEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEA 328 (503)
T ss_pred -hCCceeecccceeeeeccCCcEEEEeeccccc-ccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHh
Confidence 999998875544 3444455655554333 23466899999999999999999999999987 789999999988
Q ss_pred cccCCCCCCCcEEEecCCC-CCCCcHHHHHHHHHHHHHHHcCC-CccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhc
Q 008850 397 VIDANGNLVPHLYCIGDAN-GKMMLAHAASAQGISVVEQVTGR-DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKE 474 (551)
Q Consensus 397 ~~~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~ 474 (551)
|++|+|||+||+. +.|.+...|++.|+..|+.+++. ....+|..+|..+||..|++++||+|++|.++|++.
T Consensus 329 ------t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~d 402 (503)
T KOG4716|consen 329 ------TNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGED 402 (503)
T ss_pred ------cCCCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcc
Confidence 8999999999997 56889999999999999999964 456789999999999999999999999999998877
Q ss_pred CCeEEEEEEecccchhhhhcC-CCceEEEEEEeCCCCCCcceeeeeCCChhHHHHHHHHH
Q 008850 475 GFEVSVAKTSFKANTKALAEN-EGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 533 (551)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~i~~l~~~ 533 (551)
+|+ +++..|+.....+-++ ...+++|+|+..++..+++|.|++||+|+|.+|-.|..
T Consensus 403 nie--vfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaA 460 (503)
T KOG4716|consen 403 NIE--VFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAA 460 (503)
T ss_pred cEE--EeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHH
Confidence 654 4576777665554433 34589999999987899999999999999999877654
No 35
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=6.7e-49 Score=410.76 Aligned_cols=366 Identities=18% Similarity=0.204 Sum_probs=273.7
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCcEEEeeCCc-cCcccccCCc-cCChhhHhhHHHHHHHHhhhhhhhcCccccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDV-VGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~~~-~GG~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
.+|||||||+||+.||.+|+++ +.+|+|||++. ++ +..| +|... .+ . .
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~~lp~~~----~~---------------~-----~ 53 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANCALPYYI----GE---------------V-----V 53 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccCCcchhh----cC---------------c-----c
Confidence 3799999999999999999987 57899999943 22 1111 11100 00 0 0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEec-eEEEe--CCcEEEeCcc-----eEEEeCeEEEeCCCCCCCCCCc
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTG-VGTIL--GPQKVKFGTD-----NIVTAKDIIIATGSVPFVPKGI 249 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~v~~~~g-----~~i~~d~lVlAtG~~p~~p~~~ 249 (551)
.... +.+........++.+++++.+ ++..+ +.+.|.+.++ .++.||+||||||+.|+.|+..
T Consensus 54 ~~~~----------~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~ 123 (438)
T PRK13512 54 EDRK----------YALAYTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFE 123 (438)
T ss_pred CCHH----------HcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCC
Confidence 0000 000000112234568998764 55444 3466665432 2478999999999999887733
Q ss_pred cCCCceeecch---hhhcc-----ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHh
Q 008850 250 EVDGKTVITSD---HALKL-----EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLI 321 (551)
Q Consensus 250 ~~~~~~v~~~~---~~~~~-----~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~ 321 (551)
...+++.. +...+ ...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.++
T Consensus 124 ---~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~ 200 (438)
T PRK13512 124 ---SDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELD 200 (438)
T ss_pred ---CCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHH
Confidence 23344332 22221 23579999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEeceEEE-eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCcccc
Q 008850 322 NPRKIDYHTGVFAT-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVID 399 (551)
Q Consensus 322 ~~~gi~~~~~~~~~-~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~ 399 (551)
+ .||+++++..+. .++. .+++.++ +++++|.|++++|++||++++ ++.++.. ++|+|.||+++|
T Consensus 201 ~-~gI~i~~~~~v~~i~~~--~v~~~~g------~~~~~D~vl~a~G~~pn~~~l--~~~gl~~~~~G~i~Vd~~~~--- 266 (438)
T PRK13512 201 K-REIPYRLNEEIDAINGN--EVTFKSG------KVEHYDMIIEGVGTHPNSKFI--ESSNIKLDDKGFIPVNDKFE--- 266 (438)
T ss_pred h-cCCEEEECCeEEEEeCC--EEEECCC------CEEEeCEEEECcCCCcChHHH--HhcCcccCCCCcEEECCCcc---
Confidence 7 899999998887 4333 4555554 578999999999999999865 5667766 679999999999
Q ss_pred CCCCCCCcEEEecCCCC----------CCCcHHHHHHHHHHHHHHHcCCCc-cC-CCCCcceEEEcCCCeeEecCCHHHH
Q 008850 400 ANGNLVPHLYCIGDANG----------KMMLAHAASAQGISVVEQVTGRDH-VL-NHLSIPAACFTHPEISMVGLTEPQA 467 (551)
Q Consensus 400 ~~~t~~~~IyA~GD~~~----------~~~~~~~A~~~g~~aa~~i~g~~~-~~-~~~~~p~~~~~~~~~~~vG~~e~~a 467 (551)
|++|||||+|||++ .+++++.|.+||+++++||+|.+. .+ ++..+|.+.|++|+++++|+||+||
T Consensus 267 ---t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a 343 (438)
T PRK13512 267 ---TNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNEL 343 (438)
T ss_pred ---cCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHH
Confidence 89999999999985 246788999999999999998653 33 4667899999999999999999999
Q ss_pred HhhchhcCCeEEEEEEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCC-hhHHHHHHHHH
Q 008850 468 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPS-KPNLVKKLADV 533 (551)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~-~~~~i~~l~~~ 533 (551)
++. + +++...++....+.+ .++++||+||++|++ +++|||+|++|+. +.++|+.++.+
T Consensus 344 ~~~----~--~~~~~~~~~~~~~~~-~~~~~g~~klv~d~~-~~~ilGa~~~g~~~a~e~i~~~~~a 402 (438)
T PRK13512 344 KQF----D--YKMVEVTQGAHANYY-PGNSPLHLRVYYDTS-NRKILRAAAVGKEGADKRIDVLSMA 402 (438)
T ss_pred ccC----C--cEEEEEecCCcCCCc-CCCceEEEEEEEECC-CCeEEEEEEEccccHHHHHHHHHHH
Confidence 852 3 555666666665544 677899999999998 8999999999996 77776655444
No 36
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=7.8e-48 Score=405.41 Aligned_cols=369 Identities=24% Similarity=0.303 Sum_probs=276.7
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CcEEEeeCCccCcccccCCc-cCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKG--LKTAIIEGDVVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g--~~V~liE~~~~GG~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
+|||||||+||+++|..|++++ .+|+|||+...-+ +..| +|... ...++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~---~~~~~~~~~~-------------------------~~~~~ 53 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS---FGACGLPYFV-------------------------GGFFD 53 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce---eecCCCceEe-------------------------ccccC
Confidence 6999999999999999999975 5899999943111 0001 11000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEec-eEEEe--CCcEEEeCc---ceEEE--eCeEEEeCCCCCCCCCCccC
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTG-VGTIL--GPQKVKFGT---DNIVT--AKDIIIATGSVPFVPKGIEV 251 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~v~~~~---g~~i~--~d~lVlAtG~~p~~p~~~~~ 251 (551)
. ..++.......+++.+++++.+ .+..+ +.+.+.+.+ +.++. ||+||||||++|..|++++.
T Consensus 54 ~----------~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~ 123 (444)
T PRK09564 54 D----------PNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNI 123 (444)
T ss_pred C----------HHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCc
Confidence 0 0111111223455679998765 44433 456666643 45566 99999999999998887766
Q ss_pred CCceeecchh---hhccc-----cCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC-CCCHHHHHHHHHHHhC
Q 008850 252 DGKTVITSDH---ALKLE-----FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-GFDPEIGKLAQRVLIN 322 (551)
Q Consensus 252 ~~~~v~~~~~---~~~~~-----~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~ 322 (551)
+...+++... ...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++
T Consensus 124 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~ 203 (444)
T PRK09564 124 NLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRE 203 (444)
T ss_pred CCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHH
Confidence 5455554432 22221 2478999999999999999999999999999999998887 4899999999999987
Q ss_pred CCceEEEeceEEE-e--CCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccc
Q 008850 323 PRKIDYHTGVFAT-K--DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVI 398 (551)
Q Consensus 323 ~~gi~~~~~~~~~-~--~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~ 398 (551)
.||+++.+..+. . +++...+.. ++ .++++|.+++|+|+.|+++++ ++.++.. ++|+|.||+++|
T Consensus 204 -~gI~v~~~~~v~~i~~~~~~~~v~~-~~------~~i~~d~vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~-- 271 (444)
T PRK09564 204 -NGVELHLNEFVKSLIGEDKVEGVVT-DK------GEYEADVVIVATGVKPNTEFL--EDTGLKTLKNGAIIVDEYGE-- 271 (444)
T ss_pred -CCCEEEcCCEEEEEecCCcEEEEEe-CC------CEEEcCEEEECcCCCcCHHHH--HhcCccccCCCCEEECCCcc--
Confidence 899999998877 2 222223333 22 369999999999999998865 6677765 678999999999
Q ss_pred cCCCCCCCcEEEecCCCCC----------CCcHHHHHHHHHHHHHHHcCCCccCCCCCcc-eEEEcCCCeeEecCCHHHH
Q 008850 399 DANGNLVPHLYCIGDANGK----------MMLAHAASAQGISVVEQVTGRDHVLNHLSIP-AACFTHPEISMVGLTEPQA 467 (551)
Q Consensus 399 ~~~~t~~~~IyA~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p-~~~~~~~~~~~vG~~e~~a 467 (551)
|+.|||||+|||++. +++++.|.+||+++|+||+|.+..++....+ .+.|++|+++++|+||+||
T Consensus 272 ----t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a 347 (444)
T PRK09564 272 ----TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEA 347 (444)
T ss_pred ----cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHH
Confidence 899999999999853 4689999999999999999976655544444 4569999999999999999
Q ss_pred HhhchhcCCeEEEEEEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCC-hhHHHHHHH
Q 008850 468 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPS-KPNLVKKLA 531 (551)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~-~~~~i~~l~ 531 (551)
++. |+++.+.++++. +.++++.+.++||+||++|++ +++|||+|++|++ +.++|+.++
T Consensus 348 ~~~----g~~~~~~~~~~~-~~~~~~~~~~~~~~klv~~~~-~~~ilG~~~~g~~~~~~~i~~~~ 406 (444)
T PRK09564 348 KKL----GIDYKTVFIKDK-NHTNYYPGQEDLYVKLIYEAD-TKVILGGQIIGKKGAVLRIDALA 406 (444)
T ss_pred HHC----CCCeEEEEEecC-CCCCcCCCCceEEEEEEEECC-CCeEEeEEEEcCccHHHHHHHHH
Confidence 875 889888887753 566677888899999999988 7999999999996 767665443
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=8.6e-43 Score=364.88 Aligned_cols=321 Identities=19% Similarity=0.268 Sum_probs=254.0
Q ss_pred HHHcCeEEEec-eEEEeC--CcEEEeCc---ceEEE--eCeEEEeCCCCCCCCCCccCCCceeecchhhhc---c-----
Q 008850 202 MKALGVDILTG-VGTILG--PQKVKFGT---DNIVT--AKDIIIATGSVPFVPKGIEVDGKTVITSDHALK---L----- 265 (551)
Q Consensus 202 ~~~~~v~~~~~-~~~~~~--~~~v~~~~---g~~i~--~d~lVlAtG~~p~~p~~~~~~~~~v~~~~~~~~---~----- 265 (551)
+.+.+++++.+ .+..++ .+.+.+.+ +.++. ||+||||||++|..|++++.+...+++..++.. +
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~ 133 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYID 133 (427)
T ss_pred HHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHh
Confidence 35679998755 444443 45665532 34677 999999999999988877765444554433221 1
Q ss_pred ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcC-CCCCCHHHHHHHHHHHhCCCceEEEeceEEE--eCCCcEE
Q 008850 266 EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-MPGFDPEIGKLAQRVLINPRKIDYHTGVFAT--KDGKPVT 342 (551)
Q Consensus 266 ~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~--~~~~~~~ 342 (551)
...+++++|||+|++|+|+|..|++.|.+|+++++.+.+ .+.+++++.+.+.+.+++ .||+++.+..+. ..++.+
T Consensus 134 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~- 211 (427)
T TIGR03385 134 KNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKK-HEINLRLNEEVDSIEGEERV- 211 (427)
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHH-cCCEEEeCCEEEEEecCCCE-
Confidence 135789999999999999999999999999999999887 466899999999999986 899999998877 222222
Q ss_pred EEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEecCCCCC----
Q 008850 343 IELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGK---- 417 (551)
Q Consensus 343 v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~---- 417 (551)
+.+.++ +++++|.+++++|++|+++++ +..++.. ++|+|.||+++| |+.|+|||+|||++.
T Consensus 212 v~~~~g------~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~~G~i~vd~~~~------t~~~~Vya~GD~~~~~~~~ 277 (427)
T TIGR03385 212 KVFTSG------GVYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQ------TSVPNIYAAGDVAESHNII 277 (427)
T ss_pred EEEcCC------CEEEeCEEEECCCccCCHHHH--HhcCcccCCCCCEEECCCcE------eCCCCEEEeeeeEEeeecc
Confidence 445444 579999999999999998865 5666665 678999999999 789999999999852
Q ss_pred ------CCcHHHHHHHHHHHHHHHcCCCccCC-CCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchh
Q 008850 418 ------MMLAHAASAQGISVVEQVTGRDHVLN-HLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 490 (551)
Q Consensus 418 ------~~~~~~A~~~g~~aa~~i~g~~~~~~-~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 490 (551)
+++++.|.+||+++|+||+|++..++ +..+|.++|++|+++++|+||++|++. |+++.+..+.+....+
T Consensus 278 ~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~----g~~~~~~~~~~~~~~~ 353 (427)
T TIGR03385 278 TKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKL----NIDYKTVFVKAKTHAN 353 (427)
T ss_pred CCCceeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHC----CCCeEEEEEecCCCCC
Confidence 35889999999999999999765443 335788999999999999999999874 8999988877766555
Q ss_pred hhhcCCCceEEEEEEeCCCCCCcceeeeeCCC-hhHH-------------HHHHHHHhhhcchhHHHH
Q 008850 491 ALAENEGEGLAKGVPRNFASSERTNQHSDRPS-KPNL-------------VKKLADVYMTFVSWFLCL 544 (551)
Q Consensus 491 ~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~-~~~~-------------i~~l~~~~~~~~~~~~~~ 544 (551)
.+ .+.++||+||++|++ +++|||+|++|+. +.++ +++|+.+++.|.+-|..+
T Consensus 354 ~~-~~~~~g~~kli~~~~-~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~ 419 (427)
T TIGR03385 354 YY-PGNSPLHLKLIYEKD-TRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRV 419 (427)
T ss_pred cC-CCCceEEEEEEEECC-CCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCc
Confidence 54 477789999999988 8999999999999 8775 466777777787766544
No 38
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1e-40 Score=368.90 Aligned_cols=356 Identities=18% Similarity=0.239 Sum_probs=265.6
Q ss_pred ccEEEECCChHHHHHHHHHHHc----CCcEEEeeCCc-cCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEK----GLKTAIIEGDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~----g~~V~liE~~~-~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (551)
.+|||||+|+||+.+|.+|+++ +++|+||+++. ++ +..+..+.. ++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~~L~~~-------------------~~------ 54 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRVHLSSY-------------------FS------ 54 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCCcchHh-------------------Hc------
Confidence 4899999999999999999875 47899999843 21 111100000 00
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece-EEEeC--CcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCC
Q 008850 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDG 253 (551)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~ 253 (551)
... .+++......+++..+|+++.++ +..++ .+.|.+.++.++.||+||||||+.|+.|++++.+.
T Consensus 55 ~~~-----------~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~ 123 (847)
T PRK14989 55 HHT-----------AEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSET 123 (847)
T ss_pred CCC-----------HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCC
Confidence 000 11222222345566899999986 44343 46677788888999999999999999998877665
Q ss_pred ceee---cchhhhcc---ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-CCHHHHHHHHHHHhCCCce
Q 008850 254 KTVI---TSDHALKL---EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKI 326 (551)
Q Consensus 254 ~~v~---~~~~~~~~---~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~~gi 326 (551)
..++ +.+++..+ ...+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +|++.++.+.+.+++ .||
T Consensus 124 ~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~-~GV 202 (847)
T PRK14989 124 QDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIES-MGV 202 (847)
T ss_pred CCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHH-CCC
Confidence 5444 44444433 235789999999999999999999999999999999998874 899999999999987 899
Q ss_pred EEEeceEEE-e--C--CCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccC
Q 008850 327 DYHTGVFAT-K--D--GKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDA 400 (551)
Q Consensus 327 ~~~~~~~~~-~--~--~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~ 400 (551)
+++++..+. . + +....+.+.++ +++++|.|++++|++||++++ +.+++.. ++|+|.||+++|
T Consensus 203 ~v~~~~~v~~I~~~~~~~~~~v~~~dG------~~i~~D~Vv~A~G~rPn~~L~--~~~Gl~~~~~G~I~VD~~l~---- 270 (847)
T PRK14989 203 RVHTSKNTLEIVQEGVEARKTMRFADG------SELEVDFIVFSTGIRPQDKLA--TQCGLAVAPRGGIVINDSCQ---- 270 (847)
T ss_pred EEEcCCeEEEEEecCCCceEEEEECCC------CEEEcCEEEECCCcccCchHH--hhcCccCCCCCcEEECCCCc----
Confidence 999998776 2 2 22345666665 689999999999999999854 6677776 678999999999
Q ss_pred CCCCCCcEEEecCCCCC----CCcHHHHHHHHHHHHHHHcCCCccCCCCCcc-eEEEcCCCeeEecCCHHHHHhhchhcC
Q 008850 401 NGNLVPHLYCIGDANGK----MMLAHAASAQGISVVEQVTGRDHVLNHLSIP-AACFTHPEISMVGLTEPQAREKAEKEG 475 (551)
Q Consensus 401 ~~t~~~~IyA~GD~~~~----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p-~~~~~~~~~~~vG~~e~~a~~~~~~~~ 475 (551)
|+.|||||+|||+.. ..+++.|..||++||+||+|.+..++....+ ...+.+.+++++|... +
T Consensus 271 --Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~~g~~~~~~lk~~G~~v~s~G~~~----------~ 338 (847)
T PRK14989 271 --TSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAFEGADLSAKLKLLGVDVGGIGDAH----------G 338 (847)
T ss_pred --CCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCCCCcccceEEEECCcceEeccccc----------C
Confidence 899999999999865 3488999999999999999987766665555 4566777899998321 1
Q ss_pred CeEEEEEEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCCh--hHHHHHH
Q 008850 476 FEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK--PNLVKKL 530 (551)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~--~~~i~~l 530 (551)
.+.......+ ......+|.||+++++ +++|||++++|+.+ .++++.+
T Consensus 339 ~~~~~~~~~~-------~~~~~~~y~Klv~~~~-~~~LlGa~lvGd~~~~~~l~~~~ 387 (847)
T PRK14989 339 RTPGARSYVY-------LDESKEIYKRLIVSED-NKTLLGAVLVGDTSDYGNLLQLV 387 (847)
T ss_pred CCCCceeEEE-------EcCCCCEEEEEEEECC-CCEEEEEEEECCHHHHHHHHHHH
Confidence 1100000011 1234479999999987 89999999999966 7777665
No 39
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=3.7e-38 Score=326.10 Aligned_cols=342 Identities=18% Similarity=0.146 Sum_probs=244.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC--cEEEeeCCc-cCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGL--KTAIIEGDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~--~V~liE~~~-~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
.+|||||||+||++||..|++.|. +|+||+++. .. +..+.-++.++.. .. .
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~~l~~~~~~~-----------------~~-----~ 57 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERPPLSKSMLLE-----------------DS-----P 57 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCCCCCHHHHCC-----------------CC-----c
Confidence 589999999999999999999876 799999842 11 0001001111000 00 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece-EEEe--CCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCce
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~ 255 (551)
+. ..+ .....+...+|+++.++ +..+ +.+.+.+.++.++.||+||||||+.|+.+++++..+..
T Consensus 58 ~~-----------~~~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~ 124 (396)
T PRK09754 58 QL-----------QQV--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGER 124 (396)
T ss_pred cc-----------ccc--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCC
Confidence 00 000 00122345799999885 4444 45678888888899999999999999877766555555
Q ss_pred eec---chhhhccc---cCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-CCHHHHHHHHHHHhCCCceEE
Q 008850 256 VIT---SDHALKLE---FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDY 328 (551)
Q Consensus 256 v~~---~~~~~~~~---~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~~gi~~ 328 (551)
+++ .+++..+. ..+++++|||+|.+|+|+|..|++.|.+||++++.+++++. ++++..+.+.+.+++ .||++
T Consensus 125 v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-~GV~i 203 (396)
T PRK09754 125 CFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQ-AGVRI 203 (396)
T ss_pred EEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHH-CCCEE
Confidence 555 44544433 24789999999999999999999999999999999998875 688888888888886 89999
Q ss_pred EeceEEE--eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCCC
Q 008850 329 HTGVFAT--KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVP 406 (551)
Q Consensus 329 ~~~~~~~--~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~ 406 (551)
+++..+. ..++.+.+++.++ +++++|.|++++|.+||+.++ +..++..++ +|.||+++| |+.|
T Consensus 204 ~~~~~V~~i~~~~~~~v~l~~g------~~i~aD~Vv~a~G~~pn~~l~--~~~gl~~~~-gi~vd~~~~------ts~~ 268 (396)
T PRK09754 204 LLNNAIEHVVDGEKVELTLQSG------ETLQADVVIYGIGISANDQLA--REANLDTAN-GIVIDEACR------TCDP 268 (396)
T ss_pred EeCCeeEEEEcCCEEEEEECCC------CEEECCEEEECCCCChhhHHH--HhcCCCcCC-CEEECCCCc------cCCC
Confidence 9998877 3344456666655 579999999999999998754 455665554 599999999 8899
Q ss_pred cEEEecCCCCC---------CCcHHHHHHHHHHHHHHHcCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCe
Q 008850 407 HLYCIGDANGK---------MMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFE 477 (551)
Q Consensus 407 ~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~ 477 (551)
||||+|||+.. ..+++.|..||++||+||+|.+.+++.....+..+.+..+.++|.+..+ +
T Consensus 269 ~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~G~~~~~----------~ 338 (396)
T PRK09754 269 AIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGD----------D 338 (396)
T ss_pred CEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEeeCCCCC----------E
Confidence 99999999842 2467899999999999999987665443444555566899999975421 1
Q ss_pred EEEEEEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCC
Q 008850 478 VSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPS 522 (551)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~ 522 (551)
+.+ . .. .....|+.+.++ + ++++|+..+|..
T Consensus 339 ~~~-~----~~------~~~~~~~~~~~~-~--~~l~g~~~~~~~ 369 (396)
T PRK09754 339 WLC-R----GN------PETQKAIWFNLQ-N--GVLIGAVTLNQG 369 (396)
T ss_pred EEE-e----cC------CCCceEEEEEee-C--CEEEEEEEECCH
Confidence 111 1 00 112234444443 4 699999999984
No 40
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-36 Score=312.13 Aligned_cols=345 Identities=17% Similarity=0.234 Sum_probs=245.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKG--LKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g--~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
.+|||||||+||+++|..|++.+ .+|+||+++.. . .+..+..++.+. ....
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~--~-~y~~~~l~~~~~------------------------~~~~ 55 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG--D-EYNKPDLSHVFS------------------------QGQR 55 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC--C-CcCcCcCcHHHh------------------------CCCC
Confidence 48999999999999999999864 57999998430 0 000000000000 0001
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHcCeEEEece-EEEeC--CcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCce
Q 008850 180 RQGVADHANNLATKIRN-NLTNSMKALGVDILTGV-GTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~-~~~~~--~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~ 255 (551)
. +++.. .....+++.+++++.+. +..++ .+.+.+ ++.++.||+||||||+.|..|++++...
T Consensus 56 ~-----------~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~-- 121 (377)
T PRK04965 56 A-----------DDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGREL-- 121 (377)
T ss_pred H-----------HHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCce--
Confidence 1 11111 12334566799998764 44443 456665 4568999999999999999888776543
Q ss_pred eecchhhhc---c---ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-CCHHHHHHHHHHHhCCCceEE
Q 008850 256 VITSDHALK---L---EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDY 328 (551)
Q Consensus 256 v~~~~~~~~---~---~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~~gi~~ 328 (551)
+++...+.. . ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. ++++..+.+.+.+++ .||++
T Consensus 122 v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-~gV~i 200 (377)
T PRK04965 122 MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTE-MGVHL 200 (377)
T ss_pred EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHh-CCCEE
Confidence 444333222 1 134689999999999999999999999999999999998876 588888889999987 89999
Q ss_pred EeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCC
Q 008850 329 HTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLV 405 (551)
Q Consensus 329 ~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~ 405 (551)
+.+..+. .+++...+++.++ +++++|.|++|+|.+|+++++ +..++..++| |.||+++| |+.
T Consensus 201 ~~~~~v~~i~~~~~~~~v~~~~g------~~i~~D~vI~a~G~~p~~~l~--~~~gl~~~~g-i~vd~~l~------ts~ 265 (377)
T PRK04965 201 LLKSQLQGLEKTDSGIRATLDSG------RSIEVDAVIAAAGLRPNTALA--RRAGLAVNRG-IVVDSYLQ------TSA 265 (377)
T ss_pred EECCeEEEEEccCCEEEEEEcCC------cEEECCEEEECcCCCcchHHH--HHCCCCcCCC-EEECCCcc------cCC
Confidence 9988776 2334455666654 689999999999999998754 4556666666 99999999 889
Q ss_pred CcEEEecCCCCCC----CcHHHHHHHHHHHHHHHcCCCccCCCCCc-ceEEEcCCCeeEecCCHHHHHhhchhcCCeEEE
Q 008850 406 PHLYCIGDANGKM----MLAHAASAQGISVVEQVTGRDHVLNHLSI-PAACFTHPEISMVGLTEPQAREKAEKEGFEVSV 480 (551)
Q Consensus 406 ~~IyA~GD~~~~~----~~~~~A~~~g~~aa~~i~g~~~~~~~~~~-p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~ 480 (551)
|||||+|||+..+ +.+..|..||+++|+||+|.+..+..... +...+.+.++.++|....+ .....+
T Consensus 266 ~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~~~~~~ 337 (377)
T PRK04965 266 PDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ--------DLRWQI 337 (377)
T ss_pred CCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCCC--------CceEEE
Confidence 9999999998542 35777999999999999998776654433 3455677899999986531 111110
Q ss_pred EEEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHH
Q 008850 481 AKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNL 526 (551)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~ 526 (551)
. +..+++.+.++.++ ++++|+.++|+.+..-
T Consensus 338 -~------------~~~~~~~~~~~~~~--~~l~g~~~~g~~~~~~ 368 (377)
T PRK04965 338 -N------------AESQGMVAKGVDEA--GQLRAFVVSEDRMKEA 368 (377)
T ss_pred -E------------eCCCCeEEEEEccC--CcEEEEEEEChhHHHH
Confidence 1 12345555555445 7999999999977553
No 41
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.2e-36 Score=337.24 Aligned_cols=344 Identities=19% Similarity=0.230 Sum_probs=252.1
Q ss_pred EEEECCChHHHHHHHHHHHc---CCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 104 LIIIGAGVGGHGAALHAVEK---GLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 104 VvIIGgG~AGl~aA~~l~~~---g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
|||||||+||+++|.+|+++ +++|+|||++ .++ +..+..+..+ .| ..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----y~r~~L~~~l------------------~g------~~~ 52 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----YNRILLSSVL------------------QG------EAD 52 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----cccccccHHH------------------CC------CCC
Confidence 68999999999999999886 4689999984 321 1111000000 00 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece-EEEe--CCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCcee
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~v 256 (551)
. +++......++++.+|+++.++ +..+ +.+.|.+.++.++.||+||||||+.|+.|++++.+..++
T Consensus 53 ~-----------~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v 121 (785)
T TIGR02374 53 L-----------DDITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGV 121 (785)
T ss_pred H-----------HHccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCE
Confidence 1 1122222334566899999885 4444 357788888889999999999999999998877655555
Q ss_pred ecc---hhhhcc---ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-CCHHHHHHHHHHHhCCCceEEE
Q 008850 257 ITS---DHALKL---EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDYH 329 (551)
Q Consensus 257 ~~~---~~~~~~---~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~~gi~~~ 329 (551)
++. +++..+ ...+++++|||+|.+|+|+|..|++.|.+|+++++.+++++. ++++..+.+.+.+++ .||+++
T Consensus 122 ~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~-~GV~v~ 200 (785)
T TIGR02374 122 YVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ-KGLTFL 200 (785)
T ss_pred EEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHH-cCCEEE
Confidence 543 333322 235789999999999999999999999999999999998875 899999999999987 899999
Q ss_pred eceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCCC
Q 008850 330 TGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVP 406 (551)
Q Consensus 330 ~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~ 406 (551)
++..+. .++....+++.++ +++++|.|++++|++||++++ +.+++..+ |.|.||+++| |+.|
T Consensus 201 ~~~~v~~i~~~~~~~~v~~~dG------~~i~~D~Vi~a~G~~Pn~~la--~~~gl~~~-ggI~Vd~~~~------Ts~p 265 (785)
T TIGR02374 201 LEKDTVEIVGATKADRIRFKDG------SSLEADLIVMAAGIRPNDELA--VSAGIKVN-RGIIVNDSMQ------TSDP 265 (785)
T ss_pred eCCceEEEEcCCceEEEEECCC------CEEEcCEEEECCCCCcCcHHH--HhcCCccC-CCEEECCCcc------cCCC
Confidence 998766 3334456777765 689999999999999999854 45566655 5699999999 8999
Q ss_pred cEEEecCCCCC----CCcHHHHHHHHHHHHHHHcCCC-ccCCCCCcc-eEEEcCCCeeEecCCHHHHHhhchhcCCeEEE
Q 008850 407 HLYCIGDANGK----MMLAHAASAQGISVVEQVTGRD-HVLNHLSIP-AACFTHPEISMVGLTEPQAREKAEKEGFEVSV 480 (551)
Q Consensus 407 ~IyA~GD~~~~----~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p-~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~ 480 (551)
||||+|||+.. ..++..|..||+++|.||+|.+ .++...... ...+.+.+++++|...... +. +.
T Consensus 266 ~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~-------~~--~~ 336 (785)
T TIGR02374 266 DIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE-------RT--TS 336 (785)
T ss_pred CEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC-------Cc--EE
Confidence 99999999854 3468889999999999999977 554443333 3457788999999865321 11 11
Q ss_pred EEEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCCh
Q 008850 481 AKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK 523 (551)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~ 523 (551)
.. +. ......|.|++++.+ +|+|++++|...
T Consensus 337 ~~--~~-------d~~~~~y~kl~~~~~---rLlGavlvgd~~ 367 (785)
T TIGR02374 337 IK--IY-------DEQKGIYKKLVLSDD---KLLGAVLFGDTS 367 (785)
T ss_pred EE--EE-------cCCCCEEEEEEEECC---EEEEEEEECCHH
Confidence 11 11 123456899999865 799999999755
No 42
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=5.7e-35 Score=294.23 Aligned_cols=291 Identities=18% Similarity=0.208 Sum_probs=209.4
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...+||+|||||||||+||..|+++|+++++||+...||.|.....+ +.++......
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~-----------------------~~~~~~~~~~ 60 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEV-----------------------ENWPGDPNDL 60 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceE-----------------------CCCCCCCCCC
Confidence 34589999999999999999999999999999987788887643211 0111111123
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEe--CC--cEEEeCcceEEEeCeEEEeCCCCCCCCCCccC---
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL--GP--QKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV--- 251 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~--~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~--- 251 (551)
+.+.+. ..+.......++++..+.+..+ .. +.+..++ .++.||+||||||+.|+.|++++.
T Consensus 61 ~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~~~~~i~g~~~~ 128 (321)
T PRK10262 61 TGPLLM-----------ERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDS-GEYTCDALIIATGASARYLGLPSEEAF 128 (321)
T ss_pred CHHHHH-----------HHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecC-CEEEECEEEECCCCCCCCCCCCCHHHc
Confidence 333322 2333444445666666554322 12 2343333 468999999999999988776653
Q ss_pred CCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEec
Q 008850 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (551)
Q Consensus 252 ~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~ 331 (551)
.+..++.+..+......+++++|||+|.+|+|+|..|++.+.+|+++++.+.+. .++...+.+.+.+++ .+|+++++
T Consensus 129 ~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~-~gV~i~~~ 205 (321)
T PRK10262 129 KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVEN-GNIILHTN 205 (321)
T ss_pred CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccC-CCeEEEeC
Confidence 344555555555555678999999999999999999999999999999987653 356677788888876 89999999
Q ss_pred eEEE-e-C-C-CcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCC-----CCccccCCC
Q 008850 332 VFAT-K-D-G-KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDE-----RMRVIDANG 402 (551)
Q Consensus 332 ~~~~-~-~-~-~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~-----~~~~~~~~~ 402 (551)
..+. . . + ....+++.++...++.+++++|.|++++|++||..++. .++..++|+|.||+ +++
T Consensus 206 ~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~---~~l~~~~g~i~vd~~~~~~~~~------ 276 (321)
T PRK10262 206 RTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE---GQLELENGYIKVQSGIHGNATQ------ 276 (321)
T ss_pred CEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhh---ccccccCCEEEECCCCcccccc------
Confidence 8776 2 2 2 23356665543222345799999999999999998653 23445679999997 566
Q ss_pred CCCCcEEEecCCCCC-CCcHHHHHHHHHHHHHHHc
Q 008850 403 NLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 403 t~~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~ 436 (551)
|++|||||+|||++. +.....|+.+|..||..|.
T Consensus 277 t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 277 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred cCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence 899999999999965 4566779999999998875
No 43
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.4e-34 Score=288.95 Aligned_cols=285 Identities=27% Similarity=0.335 Sum_probs=205.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
|||+|||||+||+++|..|++.|++|+|||+...||.|.....+.. ..+++. ....
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~--------------------~~~~~~---~~~~- 56 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVEN--------------------YPGFPE---GISG- 56 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccc--------------------cCCCCC---CCCh-
Confidence 6999999999999999999999999999999778887764321100 001000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCC----cEEEeCcceEEEeCeEEEeCCCCCCCCCCccCC---Cc
Q 008850 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP----QKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD---GK 254 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~---~~ 254 (551)
.++...+...+++.+++++...+..++. +.+.+.++.++.||+||+|||+.|..|++++.+ +.
T Consensus 57 ----------~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~ 126 (300)
T TIGR01292 57 ----------PELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGR 126 (300)
T ss_pred ----------HHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCc
Confidence 1233344556667799988866554332 356666677899999999999998876655432 33
Q ss_pred eeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEE
Q 008850 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (551)
Q Consensus 255 ~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~ 334 (551)
.++.+.........+++++|||+|.+|+|+|..|++.+.+|+++++.+.+.. . ..+.+.+++..||+++.+..+
T Consensus 127 ~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~--~----~~~~~~l~~~~gv~~~~~~~v 200 (300)
T TIGR01292 127 GVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA--E----KILLDRLRKNPNIEFLWNSTV 200 (300)
T ss_pred cEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc--C----HHHHHHHHhCCCeEEEeccEE
Confidence 3443333222234578999999999999999999999999999999876532 2 334455555239999999877
Q ss_pred E---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEE
Q 008850 335 T---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYC 410 (551)
Q Consensus 335 ~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA 410 (551)
. .+++...+++.+.. .++..++++|.+++|+|++|+.+++. .. +.. ++|++.||++++ |++||||+
T Consensus 201 ~~i~~~~~~~~v~~~~~~-~g~~~~i~~D~vi~a~G~~~~~~~l~--~~-~~~~~~g~i~v~~~~~------t~~~~vya 270 (300)
T TIGR01292 201 KEIVGDNKVEGVKIKNTV-TGEEEELKVDGVFIAIGHEPNTELLK--GL-LELDEGGYIVTDEGMR------TSVPGVFA 270 (300)
T ss_pred EEEEccCcEEEEEEEecC-CCceEEEEccEEEEeeCCCCChHHHH--Hh-heecCCCcEEECCCCc------cCCCCEEE
Confidence 7 22333345554321 12346899999999999999987663 22 333 678999999999 89999999
Q ss_pred ecCCCC-CCCcHHHHHHHHHHHHHHHc
Q 008850 411 IGDANG-KMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 411 ~GD~~~-~~~~~~~A~~~g~~aa~~i~ 436 (551)
+|||++ .++.+..|+.||+.||.+|.
T Consensus 271 ~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 271 AGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred eecccCcchhhhhhhhhhHHHHHHHHH
Confidence 999998 57889999999999999986
No 44
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-34 Score=279.90 Aligned_cols=285 Identities=27% Similarity=0.351 Sum_probs=217.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCc-EEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLK-TAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~-V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
+.|||+|||||||||+||+++.+.+++ ++|+|+...||......-+.. .+|++. ..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~ven--------------------ypg~~~---~~ 58 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVEN--------------------YPGFPG---GI 58 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecC--------------------CCCCcc---CC
Confidence 458999999999999999999999998 778888878865432211110 011111 11
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEe---C-CcEEEeCcceEEEeCeEEEeCCCCCCCCCCc---cC
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL---G-PQKVKFGTDNIVTAKDIIIATGSVPFVPKGI---EV 251 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~-~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~---~~ 251 (551)
. ..++...+.++....++++....+..+ + .+.|.++++. +++++||||||..++.|..+ ++
T Consensus 59 ~-----------g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~ 126 (305)
T COG0492 59 L-----------GPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEF 126 (305)
T ss_pred c-----------hHHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhh
Confidence 2 234555556666778999888665533 3 5678888876 99999999999998766543 57
Q ss_pred CCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEec
Q 008850 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (551)
Q Consensus 252 ~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~ 331 (551)
.+.+++.|..|+. .+.+|+|+|||+|.+|+|.|.+|.+.+.+||+++|++.+.+ .+.+.+.+++..+|+++.+
T Consensus 127 ~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------~~~~~~~l~~~~~i~~~~~ 199 (305)
T COG0492 127 EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------EEILVERLKKNVKIEVLTN 199 (305)
T ss_pred cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------CHHHHHHHHhcCCeEEEeC
Confidence 7888888888888 77789999999999999999999999999999999998754 2334444444248999999
Q ss_pred eEEE-eCCC-cEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCCCcEE
Q 008850 332 VFAT-KDGK-PVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLY 409 (551)
Q Consensus 332 ~~~~-~~~~-~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~~Iy 409 (551)
..+. ..++ ...+++.+.. +....+.+|.+++++|..|+++++ ...++..++|+|.||+.++ ||+|+||
T Consensus 200 ~~i~ei~G~~v~~v~l~~~~--~~~~~~~~~gvf~~iG~~p~~~~~--~~~~~~~~~g~I~v~~~~~------TsvpGif 269 (305)
T COG0492 200 TVVKEILGDDVEGVVLKNVK--GEEKELPVDGVFIAIGHLPNTELL--KGLGVLDENGYIVVDEEME------TSVPGIF 269 (305)
T ss_pred CceeEEecCccceEEEEecC--CceEEEEeceEEEecCCCCchHHH--hhccccCCCCcEEcCCCcc------cCCCCEE
Confidence 8877 3332 4567777653 334689999999999999999866 3444445899999999999 8999999
Q ss_pred EecCCCCCC-CcHHHHHHHHHHHHHHHc
Q 008850 410 CIGDANGKM-MLAHAASAQGISVVEQVT 436 (551)
Q Consensus 410 A~GD~~~~~-~~~~~A~~~g~~aa~~i~ 436 (551)
|+|||+..+ +++..|..+|..||.++.
T Consensus 270 AaGDv~~~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 270 AAGDVADKNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred EeEeeccCcccEEeehhhhHHHHHHHHH
Confidence 999999775 478889999999988764
No 45
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=5.2e-34 Score=297.25 Aligned_cols=281 Identities=21% Similarity=0.278 Sum_probs=206.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
+.+|||||||+||+.+|.+|.+.+++|+|||+...- .+..++| .. .....+.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~---~~~~~l~---------------------~~----~~g~~~~ 61 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM---LFTPLLP---------------------QT----TTGTLEF 61 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc---chhhhHH---------------------Hh----cccCCCh
Confidence 468999999999999999998778999999984200 0000000 00 0001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeC--CcEEEe----------CcceEEEeCeEEEeCCCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKF----------GTDNIVTAKDIIIATGSVPFVPKG 248 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~~----------~~g~~i~~d~lVlAtG~~p~~p~~ 248 (551)
+.+...+...+...+++++.+++..++ .+.|.+ +++.++.||+||||||+.|..|++
T Consensus 62 -----------~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~i 130 (424)
T PTZ00318 62 -----------RSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNI 130 (424)
T ss_pred -----------HHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCC
Confidence 122222344455578999999887664 466766 456789999999999999887766
Q ss_pred ccCCCc--eeecchhhhcc--------------------ccCCceEEEECCChhHHHHHHHHHh--------------CC
Q 008850 249 IEVDGK--TVITSDHALKL--------------------EFVPDWIAIVGSGYIGLEFSDVYTA--------------LG 292 (551)
Q Consensus 249 ~~~~~~--~v~~~~~~~~~--------------------~~~~k~v~VvG~G~~g~e~A~~l~~--------------~g 292 (551)
++.... .+.+.+++..+ ....++++|||+|++|+|+|..|.+ .+
T Consensus 131 pG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~ 210 (424)
T PTZ00318 131 PGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEE 210 (424)
T ss_pred CCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 654321 11222221111 0112489999999999999999876 37
Q ss_pred CeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE-eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 293 SEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 293 ~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~-~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
.+|+++++++++++.+++++++.+++.+++ .||+++++..+. .+++ .+++.+| +++++|.++|++|.+|+
T Consensus 211 ~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~-~gV~v~~~~~v~~v~~~--~v~~~~g------~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 211 CKVTVLEAGSEVLGSFDQALRKYGQRRLRR-LGVDIRTKTAVKEVLDK--EVVLKDG------EVIPTGLVVWSTGVGPG 281 (424)
T ss_pred CEEEEEcCCCcccccCCHHHHHHHHHHHHH-CCCEEEeCCeEEEEeCC--EEEECCC------CEEEccEEEEccCCCCc
Confidence 899999999999999999999999999987 999999998887 4333 3556665 68999999999999998
Q ss_pred CCCCCCccccccc-CCCceeeCCCCccccCCCCCCCcEEEecCCCCC-----CCcHHHHHHHHHHHHHHHcC
Q 008850 372 TNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGK-----MMLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 372 ~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g 437 (551)
. ++ +.+++.. ++|+|.||+++|+ +++|||||+|||+.. ++++..|++||+++|+||.+
T Consensus 282 ~-~~--~~~~l~~~~~G~I~Vd~~l~~-----~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 282 P-LT--KQLKVDKTSRGRISVDDHLRV-----KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred c-hh--hhcCCcccCCCcEEeCCCccc-----CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 4 33 4455554 6799999999996 789999999999863 57899999999999999974
No 46
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-33 Score=282.02 Aligned_cols=282 Identities=22% Similarity=0.255 Sum_probs=212.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcC--CcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g--~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
+.+|||||||++|+.+|..|.+.. .+|++||+... .+.+++++.. .....
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~---------hl~~plL~ev-------------------a~g~l 54 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY---------HLFTPLLYEV-------------------ATGTL 54 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc---------cccchhhhhh-------------------hcCCC
Confidence 368999999999999999999974 89999999420 1111111100 01112
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHc-CeEEEeceEEEeC--CcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCC--
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDG-- 253 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~--~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~-- 253 (551)
+. +++...+...++.. +|+++.+++..+| .++|.+.++.++.||+||||+|+.+..+++++...
T Consensus 55 ~~-----------~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a 123 (405)
T COG1252 55 SE-----------SEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYA 123 (405)
T ss_pred Ch-----------hheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhC
Confidence 21 22333344445534 4999999988765 57899988778999999999999998887766433
Q ss_pred ceeecchhhhccc-----------cCC-----ceEEEECCChhHHHHHHHHHhCC-------------CeEEEEcccCcC
Q 008850 254 KTVITSDHALKLE-----------FVP-----DWIAIVGSGYIGLEFSDVYTALG-------------SEVTFIEALDQL 304 (551)
Q Consensus 254 ~~v~~~~~~~~~~-----------~~~-----k~v~VvG~G~~g~e~A~~l~~~g-------------~~Vtlv~~~~~~ 304 (551)
..+.+.+++.++. ... -+++|+|||++|+|+|.+|.++- .+|+++++++++
T Consensus 124 ~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 124 FGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 2344555553321 112 26999999999999999887642 389999999999
Q ss_pred CCCCCHHHHHHHHHHHhCCCceEEEeceEEE-eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccc
Q 008850 305 MPGFDPEIGKLAQRVLINPRKIDYHTGVFAT-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVV 383 (551)
Q Consensus 305 l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~-~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~ 383 (551)
+|.|+++.++.+++.|++ .||++++++.++ .+.+. |++.++. ++|++|.+||++|.+++...-.+ .+++
T Consensus 204 Lp~~~~~l~~~a~~~L~~-~GV~v~l~~~Vt~v~~~~--v~~~~g~-----~~I~~~tvvWaaGv~a~~~~~~l--~~~e 273 (405)
T COG1252 204 LPMFPPKLSKYAERALEK-LGVEVLLGTPVTEVTPDG--VTLKDGE-----EEIPADTVVWAAGVRASPLLKDL--SGLE 273 (405)
T ss_pred ccCCCHHHHHHHHHHHHH-CCCEEEcCCceEEECCCc--EEEccCC-----eeEecCEEEEcCCCcCChhhhhc--Chhh
Confidence 999999999999999997 999999999988 55554 4554441 26999999999999998753221 3556
Q ss_pred c-CCCceeeCCCCccccCCCCCCCcEEEecCCCC------CCCcHHHHHHHHHHHHHHHc
Q 008850 384 T-QRGFVPVDERMRVIDANGNLVPHLYCIGDANG------KMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 384 ~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~------~~~~~~~A~~~g~~aa~~i~ 436 (551)
. .+|++.||+++|+ +++|+|||+|||+. .|+.++.|++||+++|+||.
T Consensus 274 ~dr~Grl~V~~~L~~-----~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~ 328 (405)
T COG1252 274 TDRRGRLVVNPTLQV-----PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIK 328 (405)
T ss_pred hccCCCEEeCCCccc-----CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHH
Confidence 5 5799999999998 89999999999973 26899999999999999997
No 47
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2e-33 Score=301.37 Aligned_cols=285 Identities=24% Similarity=0.249 Sum_probs=201.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..|||+|||||||||+||..|++.|++|+|||++.+||+|....++... .++ ....
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~--------------------pg~----~~~~ 58 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNY--------------------PGI----LNTT 58 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccC--------------------CCC----cCCC
Confidence 3589999999999999999999999999999998899988754332110 000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCC----cEEEeCcceEEEeCeEEEeCCCCCCCCCCccC---C
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP----QKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV---D 252 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~---~ 252 (551)
. ..+...+...++..+++++.+.+..++. +.+.+.++ ++.+++||||||+.|+.|++++. .
T Consensus 59 ~-----------~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~ 126 (555)
T TIGR03143 59 G-----------PELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFT 126 (555)
T ss_pred H-----------HHHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhC
Confidence 1 2233344455566789988776654431 34555544 68999999999999988876653 2
Q ss_pred CceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEece
Q 008850 253 GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGV 332 (551)
Q Consensus 253 ~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~ 332 (551)
+..++.+..+......+++++|||+|++|+|+|..|++.|.+|+++++.+.+.. +... ..+.+.. .||+++++.
T Consensus 127 ~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~---~~~~~~~-~gV~i~~~~ 200 (555)
T TIGR03143 127 GRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLI---AEKVKNH-PKIEVKFNT 200 (555)
T ss_pred CceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHH---HHHHHhC-CCcEEEeCC
Confidence 344554444333345689999999999999999999999999999999887532 2222 2233333 699999998
Q ss_pred EEE--eCCCc-EEEEEecccCCCCCeE--EecCE----EEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008850 333 FAT--KDGKP-VTIELIDAKTKEPKDT--LEVDA----ALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 402 (551)
Q Consensus 333 ~~~--~~~~~-~~v~~~~g~~~~~~~~--i~~D~----vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~ 402 (551)
.+. ..++. ..+.+.+... ++..+ +++|. |++++|++|++.++. .++.. ++|+|.||++++
T Consensus 201 ~V~~i~~~~~v~~v~~~~~~~-G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~---~~l~l~~~G~I~vd~~~~------ 270 (555)
T TIGR03143 201 ELKEATGDDGLRYAKFVNNVT-GEITEYKAPKDAGTFGVFVFVGYAPSSELFK---GVVELDKRGYIPTNEDME------ 270 (555)
T ss_pred EEEEEEcCCcEEEEEEEECCC-CCEEEEeccccccceEEEEEeCCCCChhHHh---hhcccCCCCeEEeCCccc------
Confidence 887 22222 2334332211 11223 34676 999999999998653 23444 579999999999
Q ss_pred CCCCcEEEecCCCCC-CCcHHHHHHHHHHHHHHHc
Q 008850 403 NLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 403 t~~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~ 436 (551)
|+.|||||+|||+.. +..+..|+.||++||.+|.
T Consensus 271 Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 271 TNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred cCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 899999999999753 4567889999999999985
No 48
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.3e-33 Score=300.87 Aligned_cols=287 Identities=24% Similarity=0.316 Sum_probs=208.4
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...|||+||||||||++||..|++.|++|+|||+ .+||+|.....++. ..+++ ..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~-~~GG~~~~~~~~~~--------------------~~~~~----~~ 264 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQVKDTVGIEN--------------------LISVP----YT 264 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec-CCCCccccCcCccc--------------------ccccC----CC
Confidence 4469999999999999999999999999999985 68998753211110 00110 01
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece-EEEe--C--CcEEEeCcceEEEeCeEEEeCCCCCCCCCCccC--
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--G--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV-- 251 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~--~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~-- 251 (551)
.+ .++...+...++..+++++.+. +..+ + .+.+.+.++..+.||+||+|||+.|+.|++++.
T Consensus 265 ~~-----------~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~ 333 (515)
T TIGR03140 265 TG-----------SQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKE 333 (515)
T ss_pred CH-----------HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHH
Confidence 11 2334445555666789988764 3322 2 245666677789999999999999887765542
Q ss_pred -CCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEe
Q 008850 252 -DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHT 330 (551)
Q Consensus 252 -~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~ 330 (551)
.+..++.+..+......+++|+|||+|++|+|+|..|++.+.+||++++.+.++. ...+.+.+++..||+++.
T Consensus 334 ~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~~ 407 (515)
T TIGR03140 334 YIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKSLPNVDILT 407 (515)
T ss_pred cCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEEE
Confidence 2334444433333334579999999999999999999999999999998876642 234555665436999999
Q ss_pred ceEEE---eC-CCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCC
Q 008850 331 GVFAT---KD-GKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLV 405 (551)
Q Consensus 331 ~~~~~---~~-~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~ 405 (551)
+..+. .+ +....+++.++.. ++.+++++|.|++++|++||++++. .. +.. ++|+|.||+++| |++
T Consensus 408 ~~~v~~i~~~~~~v~~v~~~~~~~-~~~~~i~~D~vi~a~G~~Pn~~~l~--~~-~~~~~~G~I~vd~~~~------Ts~ 477 (515)
T TIGR03140 408 SAQTTEIVGDGDKVTGIRYQDRNS-GEEKQLDLDGVFVQIGLVPNTEWLK--DA-VELNRRGEIVIDERGR------TSV 477 (515)
T ss_pred CCeeEEEEcCCCEEEEEEEEECCC-CcEEEEEcCEEEEEeCCcCCchHHh--hh-cccCCCCeEEECCCCC------CCC
Confidence 98776 23 2333466665422 2235799999999999999998773 23 444 678999999999 899
Q ss_pred CcEEEecCCCCCC-CcHHHHHHHHHHHHHHHcC
Q 008850 406 PHLYCIGDANGKM-MLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 406 ~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~g 437 (551)
|||||+|||++.+ +++..|+.+|..||.+|..
T Consensus 478 p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 478 PGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred CCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 9999999999864 5778899999999998864
No 49
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=4e-33 Score=292.04 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=199.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
..++|+||||||||+++|..|++.|++|+|||+ +.+||.+.+. +|.. ..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g--ip~~----------------------------~~ 181 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG--IPEF----------------------------RL 181 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec--CCCc----------------------------cC
Confidence 357999999999999999999999999999999 6788875421 1210 01
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCC-CCCCCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS-VPFVPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~-~p~~p~~~~~~~~~v~ 257 (551)
+ .++.......+...||+++.+... .+.+.+.+. ...||+||||||+ .|..|++++.+..+++
T Consensus 182 ~------------~~~~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~ 245 (449)
T TIGR01316 182 P------------KEIVVTEIKTLKKLGVTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVY 245 (449)
T ss_pred C------------HHHHHHHHHHHHhCCcEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcE
Confidence 1 111112223455679999988632 234444433 3579999999998 6888877776655677
Q ss_pred cchhhhcc---------------ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhC
Q 008850 258 TSDHALKL---------------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLIN 322 (551)
Q Consensus 258 ~~~~~~~~---------------~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~ 322 (551)
+..+++.. ...+++|+|||+|++|+|+|..+.+.|.+||+++++++...... ....+.+++
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~----~~~~~~l~~ 321 (449)
T TIGR01316 246 SANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR----VEEIAHAEE 321 (449)
T ss_pred EHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC----HHHHHHHHh
Confidence 65544321 12468999999999999999999999999999998764211111 112234454
Q ss_pred CCceEEEeceEEE---eC--CCcEEEEEe---------ccc-----CCCCCeEEecCEEEEeecCCCCCCCCCCcccccc
Q 008850 323 PRKIDYHTGVFAT---KD--GKPVTIELI---------DAK-----TKEPKDTLEVDAALIATGRAPFTNGLGLENINVV 383 (551)
Q Consensus 323 ~~gi~~~~~~~~~---~~--~~~~~v~~~---------~g~-----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~ 383 (551)
.||+++++..++ .+ +....+++. +|. ..++..++++|.||+++|+.|++.++ +..++.
T Consensus 322 -~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l--~~~gl~ 398 (449)
T TIGR01316 322 -EGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMA--ETTRLK 398 (449)
T ss_pred -CCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhh--hccCcc
Confidence 799999887665 22 223345543 110 01223479999999999999998755 555666
Q ss_pred c-CCCceeeCCCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 384 T-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 384 ~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
. .+|+|.||++++ |+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 399 ~~~~G~i~vd~~~~------Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 399 TSERGTIVVDEDQR------TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred cCCCCeEEeCCCCc------cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 5 678999999999 8999999999999888899999999999999985
No 50
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.1e-32 Score=294.12 Aligned_cols=286 Identities=24% Similarity=0.310 Sum_probs=210.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...|||+||||||||++||.+|++.|++|+||++ .+||+|.....++. ..+++ ..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~-~~GG~~~~~~~~~~--------------------~~~~~----~~ 263 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE-RFGGQVLDTMGIEN--------------------FISVP----ET 263 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec-CCCCeeeccCcccc--------------------cCCCC----CC
Confidence 3469999999999999999999999999999986 48998853211110 00110 11
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece-EEEe----CCcEEEeCcceEEEeCeEEEeCCCCCCCCCCcc---
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL----GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIE--- 250 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~----~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~--- 250 (551)
.+ .++...+...+++.+++++.++ +..+ +.+.+.+.++.++.||+||+|||+.|+.|++++
T Consensus 264 ~~-----------~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~ 332 (517)
T PRK15317 264 EG-----------PKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDE 332 (517)
T ss_pred CH-----------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHH
Confidence 22 2344455566777889988764 3333 245666777778999999999999988766544
Q ss_pred CCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEe
Q 008850 251 VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHT 330 (551)
Q Consensus 251 ~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~ 330 (551)
+.+..++.+..+......+|+|+|||+|++|+|+|..|+..+.+|+++++.+.+.. + +.+.+.+.+..||+++.
T Consensus 333 ~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gI~i~~ 406 (517)
T PRK15317 333 YRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--D----QVLQDKLRSLPNVTIIT 406 (517)
T ss_pred hcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--c----HHHHHHHhcCCCcEEEE
Confidence 33445555544444445689999999999999999999999999999998876643 2 33455555436999999
Q ss_pred ceEEE---eC-CCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCCC
Q 008850 331 GVFAT---KD-GKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLV 405 (551)
Q Consensus 331 ~~~~~---~~-~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~ 405 (551)
++.+. .+ +....+++.+... ++.+++++|.+++++|++||++++. .. +.. ++|+|.||+++| |++
T Consensus 407 ~~~v~~i~~~~g~v~~v~~~~~~~-g~~~~i~~D~v~~~~G~~p~~~~l~--~~-v~~~~~g~i~vd~~l~------Ts~ 476 (517)
T PRK15317 407 NAQTTEVTGDGDKVTGLTYKDRTT-GEEHHLELEGVFVQIGLVPNTEWLK--GT-VELNRRGEIIVDARGA------TSV 476 (517)
T ss_pred CcEEEEEEcCCCcEEEEEEEECCC-CcEEEEEcCEEEEeECCccCchHHh--hh-eeeCCCCcEEECcCCC------CCC
Confidence 98877 23 2333466665422 2335799999999999999998774 22 444 678999999999 899
Q ss_pred CcEEEecCCCCCC-CcHHHHHHHHHHHHHHHc
Q 008850 406 PHLYCIGDANGKM-MLAHAASAQGISVVEQVT 436 (551)
Q Consensus 406 ~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~ 436 (551)
|||||+|||++.+ +....|+.+|..||.+++
T Consensus 477 p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 477 PGVFAAGDCTTVPYKQIIIAMGEGAKAALSAF 508 (517)
T ss_pred CCEEECccccCCCCCEEEEhhhhHHHHHHHHH
Confidence 9999999998754 678899999999998876
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1e-32 Score=289.39 Aligned_cols=280 Identities=19% Similarity=0.223 Sum_probs=200.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
..+||+||||||||++||..|+++|++|+|+|+ +.+||.+.+. +|... .
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g--ip~~~----------------------------l 188 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG--IPEFR----------------------------L 188 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec--CCCcc----------------------------C
Confidence 457999999999999999999999999999999 6789886421 22100 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcc-eEEEeCeEEEeCCC-CCCCCCCccCCCcee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTD-NIVTAKDIIIATGS-VPFVPKGIEVDGKTV 256 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g-~~i~~d~lVlAtG~-~p~~p~~~~~~~~~v 256 (551)
.. +.+.......++..|++++.++.. ...+.+++. ..+.||+||||||+ .|+.+++++.+..++
T Consensus 189 ~~-----------~~~~~~~~~~~~~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV 254 (464)
T PRK12831 189 PK-----------ETVVKKEIENIKKLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGV 254 (464)
T ss_pred Cc-----------cHHHHHHHHHHHHcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCc
Confidence 00 111222234566679999888743 123333332 34679999999998 588888777666667
Q ss_pred ecchhhhcc--------------ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc-CCCCCCHHHHHHHHHHHh
Q 008850 257 ITSDHALKL--------------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LMPGFDPEIGKLAQRVLI 321 (551)
Q Consensus 257 ~~~~~~~~~--------------~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~ 321 (551)
++..+++.. ...+++|+|||+|++|+|+|..+.++|.+|+++++++. -++....+ +. .++
T Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e----~~-~a~ 329 (464)
T PRK12831 255 FSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE----VH-HAK 329 (464)
T ss_pred EEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHH----HH-HHH
Confidence 776665422 13579999999999999999999999999999998653 23322222 22 233
Q ss_pred CCCceEEEeceEEE---eC--CCcEEEEEe---------cccC-----CCCCeEEecCEEEEeecCCCCCCCCCCccccc
Q 008850 322 NPRKIDYHTGVFAT---KD--GKPVTIELI---------DAKT-----KEPKDTLEVDAALIATGRAPFTNGLGLENINV 382 (551)
Q Consensus 322 ~~~gi~~~~~~~~~---~~--~~~~~v~~~---------~g~~-----~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l 382 (551)
+ .||+++++..+. .+ +....+++. +|.. .++..++++|.||+++|+.|++.++. ...++
T Consensus 330 ~-eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~-~~~gl 407 (464)
T PRK12831 330 E-EGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISS-TTKGL 407 (464)
T ss_pred H-cCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhc-ccCCc
Confidence 4 799999887655 22 223234432 1110 12234799999999999999987552 22456
Q ss_pred cc-CCCceeeCCC-CccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 383 VT-QRGFVPVDER-MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 383 ~~-~~G~i~Vd~~-~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
.. ++|+|.||++ ++ |+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 408 ~~~~~G~i~vd~~~~~------Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 408 KINKRGCIVADEETGL------TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred eECCCCcEEECCCCCc------cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 55 6789999998 88 8999999999999888899999999999999985
No 52
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=3.8e-32 Score=280.15 Aligned_cols=345 Identities=21% Similarity=0.280 Sum_probs=256.0
Q ss_pred ccEEEECCChHHHHHHHHHHHc---CCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEK---GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~---g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
.+++|||.|++|..+..++.+. -++++++-.++- |. +
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~----------~n------------------------------Y 43 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPR----------PN------------------------------Y 43 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCC----------cc------------------------------c
Confidence 5899999999999999999884 367898865210 00 0
Q ss_pred CHHHHHHHHH--HHHHHHHHHHHHHHHHcCeEEEeceEE-Ee--CCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCC
Q 008850 179 DRQGVADHAN--NLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDG 253 (551)
Q Consensus 179 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~ 253 (551)
++..+...+. ...+++...-..++++++|+++.++.. .+ +.+.|.++.|.++.||+||+||||.|++||+++.+.
T Consensus 44 ~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~ 123 (793)
T COG1251 44 NRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDL 123 (793)
T ss_pred cceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCC
Confidence 0000000000 012444445566788899999998743 34 457888888999999999999999999999998887
Q ss_pred ceeecchhhhcc------ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-CCHHHHHHHHHHHhCCCce
Q 008850 254 KTVITSDHALKL------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKI 326 (551)
Q Consensus 254 ~~v~~~~~~~~~------~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~~gi 326 (551)
..++...+..++ ....++.+|||+|..|+|.|..|.+.|.+|++++..+.+|.. +|+.....+++.+++ .||
T Consensus 124 ~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~-~Gi 202 (793)
T COG1251 124 PGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLED-LGI 202 (793)
T ss_pred CCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHh-hcc
Confidence 666644433322 233467899999999999999999999999999999988865 888889999999987 999
Q ss_pred EEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCC
Q 008850 327 DYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGN 403 (551)
Q Consensus 327 ~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t 403 (551)
+++++.... .++....+.+.|| ..+++|.|++++|.+||++.. ..+++..++| |.||++|| |
T Consensus 203 ~~~l~~~t~ei~g~~~~~~vr~~DG------~~i~ad~VV~a~GIrPn~ela--~~aGlavnrG-Ivvnd~mq------T 267 (793)
T COG1251 203 KVLLEKNTEEIVGEDKVEGVRFADG------TEIPADLVVMAVGIRPNDELA--KEAGLAVNRG-IVVNDYMQ------T 267 (793)
T ss_pred eeecccchhhhhcCcceeeEeecCC------CcccceeEEEecccccccHhH--HhcCcCcCCC-eeeccccc------c
Confidence 999987665 5556678889887 789999999999999999865 5678888886 99999999 8
Q ss_pred CCCcEEEecCCCCC----CCcHHHHHHHHHHHHHHHcCCCcc-CCCCCcceE--EEcCCCeeEecCCHHHHHhhchhcCC
Q 008850 404 LVPHLYCIGDANGK----MMLAHAASAQGISVVEQVTGRDHV-LNHLSIPAA--CFTHPEISMVGLTEPQAREKAEKEGF 476 (551)
Q Consensus 404 ~~~~IyA~GD~~~~----~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~--~~~~~~~~~vG~~e~~a~~~~~~~~~ 476 (551)
+.|+|||+|+|+.. +.+...+..|++++|+++++.... +.. .+++. ..+.-++.+.|--. +. .+-
T Consensus 268 sdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~g-sv~stkLKv~Gvdl~S~GD~~-e~------~~~ 339 (793)
T COG1251 268 SDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEG-SVTSTKLKVSGVDVFSAGDFQ-ET------EGA 339 (793)
T ss_pred cCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccccccc-ccchhhhcccccceeeccchh-hc------CCC
Confidence 99999999999743 678999999999999999987553 322 23322 23344666776554 21 133
Q ss_pred eEEEEEEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChh
Q 008850 477 EVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKP 524 (551)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~ 524 (551)
+..++. ++.++..|-++-++ ++|+|+..+|..+.
T Consensus 340 ~~iv~~------------D~~~~iYKrlvL~d--d~IvgavL~GDt~d 373 (793)
T COG1251 340 ESIVFR------------DEQRGIYKKLVLKD--DKIVGAVLYGDTSD 373 (793)
T ss_pred ceEEEe------------cccccceeEEEEeC--CeEEEEEEEeeccc
Confidence 333322 34455545554445 49999999999763
No 53
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.4e-31 Score=274.64 Aligned_cols=276 Identities=23% Similarity=0.309 Sum_probs=201.5
Q ss_pred cEEEECCChHHHHHHHHHHHc---CCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 103 DLIIIGAGVGGHGAALHAVEK---GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~---g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
+|||||||+||+.+|.+|+++ +.+|+|||++.. ..+..++|.. .. ...+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~---~~~~~~~~~~----~~---------------------g~~~ 52 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST---TPYSGMLPGM----IA---------------------GHYS 52 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC---CcccchhhHH----Hh---------------------eeCC
Confidence 589999999999999999754 689999998431 0011111100 00 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeC--CcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCceee
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVI 257 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~v~ 257 (551)
. +++...+...++..+++++.+.+..++ .+.|.+.+++++.||+||||||+.|..|++++.. ..++
T Consensus 53 ~-----------~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~-~~~~ 120 (364)
T TIGR03169 53 L-----------DEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAA-DLAV 120 (364)
T ss_pred H-----------HHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCCccc-cccc
Confidence 1 222223344556679999999887665 5678888888899999999999999888766532 2222
Q ss_pred ---cchhhhc--------c--ccCCceEEEECCChhHHHHHHHHHh----CC--CeEEEEcccCcCCCCCCHHHHHHHHH
Q 008850 258 ---TSDHALK--------L--EFVPDWIAIVGSGYIGLEFSDVYTA----LG--SEVTFIEALDQLMPGFDPEIGKLAQR 318 (551)
Q Consensus 258 ---~~~~~~~--------~--~~~~k~v~VvG~G~~g~e~A~~l~~----~g--~~Vtlv~~~~~~l~~~~~~~~~~~~~ 318 (551)
+.+++.. . ...+++++|||+|.+|+|+|..|.+ .| .+|+++ +.+.+++.+++++.+.+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~ 199 (364)
T TIGR03169 121 PVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLR 199 (364)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHH
Confidence 2122111 1 1235799999999999999999975 34 589999 6677888889999999999
Q ss_pred HHhCCCceEEEeceEEE-eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCc
Q 008850 319 VLINPRKIDYHTGVFAT-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMR 396 (551)
Q Consensus 319 ~l~~~~gi~~~~~~~~~-~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~ 396 (551)
.+++ .||+++.+..+. .+++ .+++.++ +++++|.+++++|.+|+.. + ...++.. ++|+|.||+++|
T Consensus 200 ~l~~-~gV~v~~~~~v~~i~~~--~v~~~~g------~~i~~D~vi~a~G~~p~~~-l--~~~gl~~~~~g~i~vd~~l~ 267 (364)
T TIGR03169 200 LLAR-RGIEVHEGAPVTRGPDG--ALILADG------RTLPADAILWATGARAPPW-L--AESGLPLDEDGFLRVDPTLQ 267 (364)
T ss_pred HHHH-CCCEEEeCCeeEEEcCC--eEEeCCC------CEEecCEEEEccCCChhhH-H--HHcCCCcCCCCeEEECCccc
Confidence 9987 899999998877 4333 4555554 6899999999999999864 2 3344544 679999999999
Q ss_pred cccCCCCCCCcEEEecCCCCC-----CCcHHHHHHHHHHHHHHHc
Q 008850 397 VIDANGNLVPHLYCIGDANGK-----MMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 397 ~~~~~~t~~~~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~ 436 (551)
+ +++|||||+|||+.. ++.+..|++||+++|+||.
T Consensus 268 ~-----~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 268 S-----LSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred c-----CCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 4 499999999999843 4568889999999999996
No 54
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=5.6e-31 Score=289.11 Aligned_cols=278 Identities=20% Similarity=0.240 Sum_probs=196.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...+|+||||||||++||..|+++|++|+|||+ +.+||.+.+ .+|...+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~--~IP~~Rl---------------------------- 587 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN--IIPQFRI---------------------------- 587 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee--ecccccc----------------------------
Confidence 347999999999999999999999999999999 678987653 1332110
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCC-CCCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP-FVPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p-~~p~~~~~~~~~v~ 257 (551)
. .++.......+...||+++.+... .+.+++.....||+||||||+.+ ..+++++.+ .+++
T Consensus 588 p------------~evL~~die~l~~~GVe~~~gt~V-----di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~ 649 (1019)
T PRK09853 588 P------------AELIQHDIEFVKAHGVKFEFGCSP-----DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVI 649 (1019)
T ss_pred c------------HHHHHHHHHHHHHcCCEEEeCcee-----EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCce
Confidence 0 111112224455679999988643 23344444567999999999984 334444432 3455
Q ss_pred cchhhhcc-------ccCCceEEEECCChhHHHHHHHHHhC-C-CeEEEEcccC-cCCCCCCHHHHHHHHHHHhCCCceE
Q 008850 258 TSDHALKL-------EFVPDWIAIVGSGYIGLEFSDVYTAL-G-SEVTFIEALD-QLMPGFDPEIGKLAQRVLINPRKID 327 (551)
Q Consensus 258 ~~~~~~~~-------~~~~k~v~VvG~G~~g~e~A~~l~~~-g-~~Vtlv~~~~-~~l~~~~~~~~~~~~~~l~~~~gi~ 327 (551)
+..+++.. ...+++|+|||+|++|+|+|..+.+. | .+|+++.|++ ..++..+.++ .+.++ .||+
T Consensus 650 saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEl----e~Ale--eGVe 723 (1019)
T PRK09853 650 KALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY----EEALE--DGVE 723 (1019)
T ss_pred ehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHH----HHHHH--cCCE
Confidence 44333221 23579999999999999999999887 4 4899999876 4566554443 33343 5899
Q ss_pred EEeceEEE--eCCCcEEEE---Ee----ccc----CCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCC
Q 008850 328 YHTGVFAT--KDGKPVTIE---LI----DAK----TKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDE 393 (551)
Q Consensus 328 ~~~~~~~~--~~~~~~~v~---~~----~g~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~ 393 (551)
++....+. ..++.+.+. +. +|. ..++..++++|.||+|+|.+|+++++ +..++.. ++|+|.||+
T Consensus 724 ~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntell--e~~GL~ld~~G~I~VDe 801 (1019)
T PRK09853 724 FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELL--KANGIPLDKKGWPVVDA 801 (1019)
T ss_pred EEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHH--HhcCccccCCCCEEeCC
Confidence 98876555 212222221 10 010 01234689999999999999999876 5566665 678999999
Q ss_pred CCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcCCC
Q 008850 394 RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD 439 (551)
Q Consensus 394 ~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 439 (551)
+++ |+.|||||+|||+..+.++..|+.||+.||++|++..
T Consensus 802 tlq------Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 802 NGE------TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred Ccc------cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 999 8999999999999888899999999999999998643
No 55
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=4.7e-31 Score=277.90 Aligned_cols=278 Identities=20% Similarity=0.237 Sum_probs=195.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
..++|+||||||+|+++|..|++.|++|+|||+ +.+||.+.+ + +|... .
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~-g-ip~~~----------------------------~ 188 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY-G-IPEFR----------------------------L 188 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec-c-CCCcc----------------------------C
Confidence 347999999999999999999999999999999 677876432 1 12100 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCC-CCCCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~ 257 (551)
. .++.......++..|++++.++.. ...+.+++. .+.||+||||||+. |..+++++.+..+++
T Consensus 189 ~------------~~~~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~ 252 (457)
T PRK11749 189 P------------KDIVDREVERLLKLGVEIRTNTEV---GRDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVY 252 (457)
T ss_pred C------------HHHHHHHHHHHHHcCCEEEeCCEE---CCccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcE
Confidence 0 112222334556679999888753 122333332 37899999999986 666666655545566
Q ss_pred cchhhhcc-------c--cCCceEEEECCChhHHHHHHHHHhCCC-eEEEEcccCc-CCCCCCHHHHHHHHHHHhCCCce
Q 008850 258 TSDHALKL-------E--FVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQ-LMPGFDPEIGKLAQRVLINPRKI 326 (551)
Q Consensus 258 ~~~~~~~~-------~--~~~k~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~~gi 326 (551)
+..++... . ..+++|+|||+|++|+|+|..+.+.|. +|+++++++. .++..+. ..+.+++ .||
T Consensus 253 ~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~-~GV 326 (457)
T PRK11749 253 SAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-----EVEHAKE-EGV 326 (457)
T ss_pred EHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHHHHHH-CCC
Confidence 55443321 1 257999999999999999999999997 8999998754 3443222 2344554 799
Q ss_pred EEEeceEEE---eCCCc-EEEEEecc---------c----CCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCc
Q 008850 327 DYHTGVFAT---KDGKP-VTIELIDA---------K----TKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGF 388 (551)
Q Consensus 327 ~~~~~~~~~---~~~~~-~~v~~~~g---------~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~ 388 (551)
+++++..+. .+++. ..+++... . ..++.+++++|.|++++|++|+..++. +..++.. ++|+
T Consensus 327 ~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~-~~~gl~~~~~g~ 405 (457)
T PRK11749 327 EFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILS-TTPGLELNRWGT 405 (457)
T ss_pred EEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhc-cccCccCCCCCC
Confidence 999987665 22221 22433211 0 012345799999999999999976542 3345554 6789
Q ss_pred eeeCC-CCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 389 VPVDE-RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 389 i~Vd~-~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
|.||+ +++ |+.|+|||+|||+..++++..|+.||+.||.+|.
T Consensus 406 i~vd~~~~~------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 406 IIADDETGR------TSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred EEeCCCCCc------cCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 99998 777 8999999999999877899999999999999986
No 56
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=6.8e-31 Score=291.88 Aligned_cols=279 Identities=22% Similarity=0.260 Sum_probs=199.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
..++|+||||||||++||..|+++|++|+|||+ +.+||.+.+ .+|... .
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~r----------------------------l 479 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY--GIPEFR----------------------------L 479 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCCCC----------------------------C
Confidence 457999999999999999999999999999999 678887542 122110 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCC-CCCCCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS-VPFVPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~-~p~~p~~~~~~~~~v~ 257 (551)
. .++.....+.+.+.||+++.+... .+.+++++.....||+||||||+ .|+.+++++.+..+++
T Consensus 480 p------------~~~~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~ 544 (752)
T PRK12778 480 P------------KKIVDVEIENLKKLGVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVM 544 (752)
T ss_pred C------------HHHHHHHHHHHHHCCCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcE
Confidence 0 011112223455679999887643 23444444445679999999998 5888877776666677
Q ss_pred cchhhhcc--------------ccCCceEEEECCChhHHHHHHHHHhCCCe-EEEEcccCc-CCCCCCHHHHHHHHHHHh
Q 008850 258 TSDHALKL--------------EFVPDWIAIVGSGYIGLEFSDVYTALGSE-VTFIEALDQ-LMPGFDPEIGKLAQRVLI 321 (551)
Q Consensus 258 ~~~~~~~~--------------~~~~k~v~VvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~-~l~~~~~~~~~~~~~~l~ 321 (551)
+..+++.. ...+++|+|||+|++|+|+|..+.+.|.+ ||++++++. .++....++ +.++
T Consensus 545 ~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~ 619 (752)
T PRK12778 545 SSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-----KHAK 619 (752)
T ss_pred EHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHHH
Confidence 76654421 12468999999999999999999999987 999998764 234322222 2234
Q ss_pred CCCceEEEeceEEE---eC--CCcEEEEEe---------ccc-----CCCCCeEEecCEEEEeecCCCCCCCCCCccccc
Q 008850 322 NPRKIDYHTGVFAT---KD--GKPVTIELI---------DAK-----TKEPKDTLEVDAALIATGRAPFTNGLGLENINV 382 (551)
Q Consensus 322 ~~~gi~~~~~~~~~---~~--~~~~~v~~~---------~g~-----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l 382 (551)
+ .||+++.+..+. .+ +....+++. +|. ..++..++++|.||+|+|+.|+..++. ...++
T Consensus 620 ~-~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~-~~~gl 697 (752)
T PRK12778 620 E-EGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPS-SIPGL 697 (752)
T ss_pred H-cCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccc-cccCc
Confidence 4 799998877554 22 223334442 111 012234799999999999999986542 22355
Q ss_pred cc-CCCceeeCCCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 383 VT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 383 ~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
.. ++|+|.||++++ |+.|||||+|||+.++.++..|+.+|+.||.+|.
T Consensus 698 ~~~~~G~i~vd~~~~------Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 698 ELNRKGTIVVDEEMQ------SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred eECCCCCEEeCCCCC------CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 55 678999999998 8999999999999888899999999999999986
No 57
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=1.9e-30 Score=264.22 Aligned_cols=282 Identities=20% Similarity=0.204 Sum_probs=194.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||+|++|+++|..|++.|++|++||+ +.+||.+... ++.. ..+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~----------------------------~~~~ 68 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG--IPEF----------------------------RIPI 68 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec--Cccc----------------------------ccCH
Confidence 5899999999999999999999999999999 6777764311 0000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCC---------cEEEe--CcceEEEeCeEEEeCCCC-CCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP---------QKVKF--GTDNIVTAKDIIIATGSV-PFVPKG 248 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~v~~--~~g~~i~~d~lVlAtG~~-p~~p~~ 248 (551)
+.+... ...+.+.+++++.++...... +.... .++..+.||+||||||+. |..|++
T Consensus 69 -----------~~~~~~-~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~i 136 (352)
T PRK12770 69 -----------ERVREG-VKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGI 136 (352)
T ss_pred -----------HHHHHH-HHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCC
Confidence 111111 123344588888876542211 00111 112247899999999994 777777
Q ss_pred ccCCCceeecchhhh-----------ccc----cCCceEEEECCChhHHHHHHHHHhCCCe-EEEEcccCcCCCCCCHHH
Q 008850 249 IEVDGKTVITSDHAL-----------KLE----FVPDWIAIVGSGYIGLEFSDVYTALGSE-VTFIEALDQLMPGFDPEI 312 (551)
Q Consensus 249 ~~~~~~~v~~~~~~~-----------~~~----~~~k~v~VvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~ 312 (551)
++.+...+++..+.. ... ..+++++|||+|++|+|+|..|.+.|.+ |+++++.+......
T Consensus 137 pg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~---- 212 (352)
T PRK12770 137 PGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPA---- 212 (352)
T ss_pred CCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCC----
Confidence 766555566543221 011 1258999999999999999999999987 99999875432111
Q ss_pred HHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEeccc--------------CCCCCeEEecCEEEEeecCCCCCCCC
Q 008850 313 GKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAK--------------TKEPKDTLEVDAALIATGRAPFTNGL 375 (551)
Q Consensus 313 ~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~--------------~~~~~~~i~~D~vi~a~G~~p~~~~l 375 (551)
.....+.+++ +||+++++..+. .+++...+++.+.. ..++.+++++|.|++++|++|++.+.
T Consensus 213 ~~~~~~~l~~-~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~ 291 (352)
T PRK12770 213 GKYEIERLIA-RGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFA 291 (352)
T ss_pred CHHHHHHHHH-cCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhh
Confidence 1233445665 899999987765 22333345543221 12334689999999999999998654
Q ss_pred CCccccccc-CCCceeeCCCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcC
Q 008850 376 GLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 376 ~l~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 437 (551)
. +..++.. ++|+|.||++++ |+.|+|||+|||++.+..+..|+.||+.||.+|..
T Consensus 292 ~-~~~g~~~~~~g~i~vd~~~~------t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 292 K-ECLGIELNRKGEIVVDEKHM------TSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred h-cccCceecCCCcEeeCCCcc------cCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence 2 2256655 668899999999 78999999999998888999999999999999863
No 58
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=2e-30 Score=289.75 Aligned_cols=278 Identities=17% Similarity=0.213 Sum_probs=200.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..+|+|||||||||+||..|+++|++|+|||+ +.+||.+.+ | +|...+ .
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y-G-IP~~rl----------------------------p 355 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY-G-IPEFRL----------------------------P 355 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc-c-CCCCcC----------------------------h
Confidence 57999999999999999999999999999999 778987542 1 332110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCC-CCCCCCccCCCceeec
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVIT 258 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~~ 258 (551)
.++.......++..||+++.+... .+.+++++.....||+||||||+. |+.+++++.+..++++
T Consensus 356 ------------~~vi~~~i~~l~~~Gv~f~~n~~v---G~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~ 420 (944)
T PRK12779 356 ------------NQLIDDVVEKIKLLGGRFVKNFVV---GKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMS 420 (944)
T ss_pred ------------HHHHHHHHHHHHhhcCeEEEeEEe---ccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEE
Confidence 122222334556679999888643 235566655556799999999995 8888877766667777
Q ss_pred chhhhcc----------------ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc-CCCCCCHHHHHHHHHHHh
Q 008850 259 SDHALKL----------------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LMPGFDPEIGKLAQRVLI 321 (551)
Q Consensus 259 ~~~~~~~----------------~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~ 321 (551)
..+++.. ...+|+|+|||||++|+|+|..+.+.|.+|+++.+++. .+|... ..+...+
T Consensus 421 a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~----~e~~~a~- 495 (944)
T PRK12779 421 ANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV----EELHHAL- 495 (944)
T ss_pred HHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH----HHHHHHH-
Confidence 6665421 12468999999999999999999999999999998753 333222 2233333
Q ss_pred CCCceEEEeceEEE---eCCC---cEEEEEe---------ccc----CCCCCeEEecCEEEEeecCCCCCCCCCCccccc
Q 008850 322 NPRKIDYHTGVFAT---KDGK---PVTIELI---------DAK----TKEPKDTLEVDAALIATGRAPFTNGLGLENINV 382 (551)
Q Consensus 322 ~~~gi~~~~~~~~~---~~~~---~~~v~~~---------~g~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l 382 (551)
+ .||+++.+..+. .+++ ...+++. +|. ..++..++++|.||+|+|+.|+.... ....++
T Consensus 496 e-eGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~-~~~~gl 573 (944)
T PRK12779 496 E-EGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK-DAEPGL 573 (944)
T ss_pred H-CCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh-hcccCc
Confidence 3 689998876555 2211 2223221 110 01233579999999999999987532 233456
Q ss_pred cc-CCCceeeCCC-CccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 383 VT-QRGFVPVDER-MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 383 ~~-~~G~i~Vd~~-~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
+. ++|.|.||++ ++ |+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 574 e~~~~G~I~vd~~~~~------Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 574 KTNKWGTIEVEKGSQR------TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIV 623 (944)
T ss_pred eECCCCCEEECCCCCc------cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHH
Confidence 65 6799999974 67 8999999999999888899999999999999986
No 59
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=1.8e-30 Score=286.68 Aligned_cols=277 Identities=19% Similarity=0.256 Sum_probs=193.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
..++|+||||||||++||..|++.|++|+|||+ +.+||.+.+. +|... .
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~--IP~~r----------------------------l 585 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI--IPEFR----------------------------I 585 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec--ccccC----------------------------C
Confidence 357999999999999999999999999999999 7789987532 33211 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCCC-CCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFV-PKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~-p~~~~~~~~~v~ 257 (551)
. .+........+...||+++.+... .+.+.+.....||+||||||+.+.. +++++. ...++
T Consensus 586 p------------~e~l~~~ie~l~~~GVe~~~g~~~-----d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~-~~~v~ 647 (1012)
T TIGR03315 586 S------------AESIQKDIELVKFHGVEFKYGCSP-----DLTVAELKNQGYKYVILAIGAWKHGPLRLEGG-GERVL 647 (1012)
T ss_pred C------------HHHHHHHHHHHHhcCcEEEEeccc-----ceEhhhhhcccccEEEECCCCCCCCCCCcCCC-Cccee
Confidence 0 011112223455679999887421 1223333456799999999998543 333332 23444
Q ss_pred cchhhhc-------cccCCceEEEECCChhHHHHHHHHHhC-CC-eEEEEcccC-cCCCCCCHHHHHHHHHHHhCCCceE
Q 008850 258 TSDHALK-------LEFVPDWIAIVGSGYIGLEFSDVYTAL-GS-EVTFIEALD-QLMPGFDPEIGKLAQRVLINPRKID 327 (551)
Q Consensus 258 ~~~~~~~-------~~~~~k~v~VvG~G~~g~e~A~~l~~~-g~-~Vtlv~~~~-~~l~~~~~~~~~~~~~~l~~~~gi~ 327 (551)
+..+++. ....+++|+|||+|++|+|+|..+.+. |. +|+++.|++ ..++..+.++ .+.++ .||+
T Consensus 648 ~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl----~~ale--eGVe 721 (1012)
T TIGR03315 648 KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL----EEALE--DGVD 721 (1012)
T ss_pred eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHH----HHHHH--cCCE
Confidence 4433332 124589999999999999999998886 74 899999876 4566555443 33333 5899
Q ss_pred EEeceEEE-eCCCcEEEEEe-------ccc----CCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCC
Q 008850 328 YHTGVFAT-KDGKPVTIELI-------DAK----TKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDER 394 (551)
Q Consensus 328 ~~~~~~~~-~~~~~~~v~~~-------~g~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~ 394 (551)
++....+. ..++.+.+... ++. ..++..++++|.||+|+|+.|+++++ +..++.. ++|+|.||++
T Consensus 722 ~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~ll--e~~GL~ld~~G~I~VD~~ 799 (1012)
T TIGR03315 722 FKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLL--QKNGIPLDEYGWPVVNQA 799 (1012)
T ss_pred EEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHH--HhcCcccCCCCCEEeCCC
Confidence 88876554 22222222210 000 01233579999999999999999866 4566665 6799999986
Q ss_pred -CccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcCC
Q 008850 395 -MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGR 438 (551)
Q Consensus 395 -~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 438 (551)
++ |+.|||||+|||+..+.++..|+.||+.||.+|+++
T Consensus 800 ~~~------Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 800 TGE------TNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCc------cCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 77 899999999999988889999999999999999864
No 60
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=258.02 Aligned_cols=282 Identities=24% Similarity=0.383 Sum_probs=218.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC--cEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGL--KTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~--~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...++|||+|++|..|+..+++.|. +++++-++. .+| +
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~---------~~p-------------------------------y 113 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREY---------LLP-------------------------------Y 113 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccc---------cCc-------------------------------c
Confidence 3689999999999999999999985 567765421 011 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE---EeCCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCce
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT---ILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~ 255 (551)
++..+........+.+.....++++..+|+++.++.. ....++|.+++|+.+.|++|+||||+.|+.|++++.+...
T Consensus 114 dr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~n 193 (478)
T KOG1336|consen 114 DRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKN 193 (478)
T ss_pred cchhcccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccc
Confidence 1111111111122333333445677789999988643 3456889999999999999999999999999888877777
Q ss_pred eecchhhhccc------cCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-CCHHHHHHHHHHHhCCCceEE
Q 008850 256 VITSDHALKLE------FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDY 328 (551)
Q Consensus 256 v~~~~~~~~~~------~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~~gi~~ 328 (551)
+++..+..+.. ...++|+++|+|.+|+|+|..|...+.+||++++.+.++++ |.+++.+.+++++++ .||++
T Consensus 194 v~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~-kgVk~ 272 (478)
T KOG1336|consen 194 VFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYEN-KGVKF 272 (478)
T ss_pred eeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHh-cCeEE
Confidence 66554443322 23678999999999999999999999999999999999985 889999999999997 89999
Q ss_pred EeceEEE-----eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008850 329 HTGVFAT-----KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 402 (551)
Q Consensus 329 ~~~~~~~-----~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~ 402 (551)
+.++.+. .+++.+.|.+.++ .++++|.|++++|.+||+.++.. +... ++|+|.||+++|
T Consensus 273 ~~~t~~s~l~~~~~Gev~~V~l~dg------~~l~adlvv~GiG~~p~t~~~~~---g~~~~~~G~i~V~~~f~------ 337 (478)
T KOG1336|consen 273 YLGTVVSSLEGNSDGEVSEVKLKDG------KTLEADLVVVGIGIKPNTSFLEK---GILLDSKGGIKVDEFFQ------ 337 (478)
T ss_pred EEecceeecccCCCCcEEEEEeccC------CEeccCeEEEeeccccccccccc---cceecccCCEeehhcee------
Confidence 9999887 4467778888887 79999999999999999998843 4444 899999999999
Q ss_pred CCCCcEEEecCCCCCC----------CcHHHHHHHHHHHHHHHcCC
Q 008850 403 NLVPHLYCIGDANGKM----------MLAHAASAQGISVVEQVTGR 438 (551)
Q Consensus 403 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~ 438 (551)
|++|||||+|||+..| .-+..|..+|+.++..+...
T Consensus 338 t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~ 383 (478)
T KOG1336|consen 338 TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMA 383 (478)
T ss_pred eccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhcc
Confidence 8999999999997542 23556788888766666543
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=1e-29 Score=268.23 Aligned_cols=281 Identities=19% Similarity=0.235 Sum_probs=193.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
..++|+||||||||+++|..|++.|++|+|||+ +.+||.+.+ .+|... .
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~--gip~~~----------------------------~ 191 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY--GIPDFK----------------------------L 191 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee--cCCccc----------------------------C
Confidence 447999999999999999999999999999999 678886532 122110 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCC-CCCCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~ 257 (551)
. .++.......+...|++++.++....+ +... .....||+||+|||+. |..+++++.+..+++
T Consensus 192 ~------------~~~~~~~~~~~~~~gv~~~~~~~v~~~---~~~~-~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~ 255 (471)
T PRK12810 192 E------------KEVIDRRIELMEAEGIEFRTNVEVGKD---ITAE-ELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVH 255 (471)
T ss_pred C------------HHHHHHHHHHHHhCCcEEEeCCEECCc---CCHH-HHHhhCCEEEEecCCCCCCcCCCCCccCCCcE
Confidence 0 111112233456689999888754221 1111 1235799999999998 666666665555666
Q ss_pred cchhhhc--------------cccCCceEEEECCChhHHHHHHHHHhCCC-eEEEEcccCcCCCCCCH-------HHHH-
Q 008850 258 TSDHALK--------------LEFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQLMPGFDP-------EIGK- 314 (551)
Q Consensus 258 ~~~~~~~--------------~~~~~k~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~-------~~~~- 314 (551)
+..+++. ....+++|+|||+|++|+|+|..+.+.|. +|++++..+. +..+. ....
T Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~--~~~~~~~~~~~~~~~~~ 333 (471)
T PRK12810 256 FAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM--PPSRRNKNNPWPYWPMK 333 (471)
T ss_pred EHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC--CccccccccCCcccchH
Confidence 5432211 23457999999999999999999888885 7997765442 22111 0001
Q ss_pred HHHHHHhCCCceEEEeceEEE--e--CCCcEEEEEec-----c---cCCCCCeEEecCEEEEeecCCCCCCCCCCccccc
Q 008850 315 LAQRVLINPRKIDYHTGVFAT--K--DGKPVTIELID-----A---KTKEPKDTLEVDAALIATGRAPFTNGLGLENINV 382 (551)
Q Consensus 315 ~~~~~l~~~~gi~~~~~~~~~--~--~~~~~~v~~~~-----g---~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l 382 (551)
...+.+++ .||+++++..+. . ++....|++.. + ...++..++++|.||+++|++|+...+ ++..++
T Consensus 334 ~~~~~~~~-~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~~gl 411 (471)
T PRK12810 334 LEVSNAHE-EGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQFGV 411 (471)
T ss_pred HHHHHHHH-cCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh-ccccCc
Confidence 12334444 799999988766 2 33333444431 1 011334689999999999999986433 355666
Q ss_pred cc-CCCceeeC-CCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 383 VT-QRGFVPVD-ERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 383 ~~-~~G~i~Vd-~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
.. ++|++.|| ++++ |+.|+|||+|||++.+.++..|+.||+.||.+|.
T Consensus 412 ~~~~~g~i~vd~~~~~------Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~ 461 (471)
T PRK12810 412 ELDERGRVAAPDNAYQ------TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID 461 (471)
T ss_pred ccCCCCCEEeCCCccc------CCCCCEEEccccCCCchhHHHHHHHHHHHHHHHH
Confidence 66 57899998 6888 8999999999999888889999999999999986
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=3.8e-29 Score=272.54 Aligned_cols=276 Identities=18% Similarity=0.214 Sum_probs=193.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
.++|+||||||||+++|..|++.|++|+|||+ +.+||.+.+. +|... ..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g--ip~~~----------------------------~~ 242 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG--IPRFR----------------------------LP 242 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec--CCCCC----------------------------CC
Confidence 46999999999999999999999999999999 6788876421 22100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCC-CCCCCccCCCceeec
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP-FVPKGIEVDGKTVIT 258 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p-~~p~~~~~~~~~v~~ 258 (551)
..+.......+...|+++..++.... .+.+.+. ...||+||||||+.+ ..+++++.+..++++
T Consensus 243 ------------~~~~~~~~~~l~~~Gv~i~~~~~v~~---dv~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~ 306 (652)
T PRK12814 243 ------------ESVIDADIAPLRAMGAEFRFNTVFGR---DITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVIS 306 (652)
T ss_pred ------------HHHHHHHHHHHHHcCCEEEeCCcccC---ccCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEe
Confidence 11111222345567999888764211 1222221 235999999999985 455566555555665
Q ss_pred chhhhc------cccCCceEEEECCChhHHHHHHHHHhCCC-eEEEEcccCc-CCCCCCHHHHHHHHHHHhCCCceEEEe
Q 008850 259 SDHALK------LEFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQ-LMPGFDPEIGKLAQRVLINPRKIDYHT 330 (551)
Q Consensus 259 ~~~~~~------~~~~~k~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~~gi~~~~ 330 (551)
..+++. ....+++|+|||+|++|+|+|..+.+.|. +|+++.++++ .|+..+.++ .+.+ + .||++++
T Consensus 307 ~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a~-~-eGV~i~~ 380 (652)
T PRK12814 307 GIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EEAL-A-EGVSLRE 380 (652)
T ss_pred HHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----HHHH-H-cCCcEEe
Confidence 544432 23457999999999999999999999986 6999998764 456544433 3333 3 6899988
Q ss_pred ceEEE---eCCCcEEEE---EecccC-----------CCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeC
Q 008850 331 GVFAT---KDGKPVTIE---LIDAKT-----------KEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVD 392 (551)
Q Consensus 331 ~~~~~---~~~~~~~v~---~~~g~~-----------~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd 392 (551)
+..+. .+++.+.++ +..+.. .++...+++|.||+++|+.|+++++ +..++.. .+|+|.||
T Consensus 381 ~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll--~~~gl~~~~~G~I~vd 458 (652)
T PRK12814 381 LAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIA--EAAGIGTSRNGTVKVD 458 (652)
T ss_pred ccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccc--cccCccccCCCcEeeC
Confidence 77654 223322222 222210 1223479999999999999999866 4556665 57999999
Q ss_pred CC-CccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 393 ER-MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 393 ~~-~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
++ ++ |+.|||||+|||+..+.++..|+.||+.||.+|.
T Consensus 459 ~~~~~------Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 459 PETLQ------TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred CCCCc------CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 74 66 8999999999999888899999999999999985
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=4e-29 Score=281.86 Aligned_cols=278 Identities=17% Similarity=0.166 Sum_probs=193.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..+|+|||||||||+||..|+++|++|+|||+ +.+||...+ .+|... ..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~--gip~~r----------------------------l~ 479 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY--GIPSFR----------------------------LP 479 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec--cCCccC----------------------------CC
Confidence 57999999999999999999999999999999 677875432 122110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcce-EEEeCeEEEeCCCC-CCCCCCccCCCceee
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDN-IVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~-~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~ 257 (551)
.++.......+...||++..+... ...+++.+-. ...||+||||||+. |+.+++++.+..+++
T Consensus 480 ------------~e~~~~~~~~l~~~Gv~~~~~~~v---g~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~ 544 (1006)
T PRK12775 480 ------------RDIIDREVQRLVDIGVKIETNKVI---GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVY 544 (1006)
T ss_pred ------------HHHHHHHHHHHHHCCCEEEeCCcc---CCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcE
Confidence 122223344566789999888632 1222222211 34699999999995 888887776656677
Q ss_pred cchhhhcc---------------ccCCceEEEECCChhHHHHHHHHHhCCC-eEEEEcccCcC-CCCCCHHHHHHHHHHH
Q 008850 258 TSDHALKL---------------EFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQL-MPGFDPEIGKLAQRVL 320 (551)
Q Consensus 258 ~~~~~~~~---------------~~~~k~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~l 320 (551)
+..+++.. ...+|+|+|||+|++|+++|..+.+.|. .|+++.++... ++.... .+ +.+
T Consensus 545 ~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~----e~-~~a 619 (1006)
T PRK12775 545 SANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE----EI-RHA 619 (1006)
T ss_pred EHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH----HH-HHH
Confidence 76554321 1357999999999999999999999987 48888776432 222111 12 233
Q ss_pred hCCCceEEEeceEEE---e--CCCcEEEEEec---------cc----CCCCCeEEecCEEEEeecCCCCCCCCCCccccc
Q 008850 321 INPRKIDYHTGVFAT---K--DGKPVTIELID---------AK----TKEPKDTLEVDAALIATGRAPFTNGLGLENINV 382 (551)
Q Consensus 321 ~~~~gi~~~~~~~~~---~--~~~~~~v~~~~---------g~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l 382 (551)
++ .||+++++..+. . ++....+++.. |. ..++..++++|.||+++|+.|+...+. ...++
T Consensus 620 ~e-eGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~-~~~gl 697 (1006)
T PRK12775 620 KE-EGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQ-STPGL 697 (1006)
T ss_pred Hh-CCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhh-ccCCc
Confidence 44 799999887655 2 23333444421 10 012234799999999999999987542 22345
Q ss_pred cc-CCCceeeCC-----CCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 383 VT-QRGFVPVDE-----RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 383 ~~-~~G~i~Vd~-----~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
.. .+|.|.||+ +++ |++|||||+|||+.++.++..|+.+|+.||.+|.
T Consensus 698 ~l~~~G~I~vd~~~v~~~~~------Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 698 ALNKWGNIAADDGKLESTQS------TNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred ccCCCCcEEeCCCccccCcC------CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 55 678899996 577 8999999999999888899999999999999985
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=1.8e-28 Score=257.69 Aligned_cols=278 Identities=18% Similarity=0.238 Sum_probs=193.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...+|+|||+||+|+++|..|+++|++|+|+|+ +.+||.+.+ .+|... .
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~--gip~~~----------------------------~ 189 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF--GIPSFK----------------------------L 189 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee--cCcccc----------------------------C
Confidence 347999999999999999999999999999999 778886532 133211 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCC-CCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPF-VPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~-~p~~~~~~~~~v~ 257 (551)
+ .++.......++..|++++.++.... .+.+.+ ....||+||+|||+.+. .+++++.+..+++
T Consensus 190 ~------------~~~~~~~~~~~~~~Gv~~~~~~~v~~---~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~ 253 (467)
T TIGR01318 190 D------------KAVLSRRREIFTAMGIEFHLNCEVGR---DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVL 253 (467)
T ss_pred C------------HHHHHHHHHHHHHCCCEEECCCEeCC---ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcE
Confidence 0 11222233456678999987763311 122222 23579999999999874 3455555545555
Q ss_pred cchhhh--------cc---------ccCCceEEEECCChhHHHHHHHHHhCCC-eEEEEcccCc-CCCCCCHHHHHHHHH
Q 008850 258 TSDHAL--------KL---------EFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQ-LMPGFDPEIGKLAQR 318 (551)
Q Consensus 258 ~~~~~~--------~~---------~~~~k~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~ 318 (551)
+..++. .+ ...+++++|||+|++|+|.|..+.+.|. +||+++|++. .++..+.++ +
T Consensus 254 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-----~ 328 (467)
T TIGR01318 254 QALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-----A 328 (467)
T ss_pred EHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH-----H
Confidence 432211 11 1246899999999999999999999985 7999998775 355444433 2
Q ss_pred HHhCCCceEEEeceEEE---eC--CCcEEEEEec---------cc-----CCCCCeEEecCEEEEeecCCCCCCCCCCcc
Q 008850 319 VLINPRKIDYHTGVFAT---KD--GKPVTIELID---------AK-----TKEPKDTLEVDAALIATGRAPFTNGLGLEN 379 (551)
Q Consensus 319 ~l~~~~gi~~~~~~~~~---~~--~~~~~v~~~~---------g~-----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~ 379 (551)
.+++ .||+++++..+. .+ +....+++.. |. ..++..++++|.||+++|++|+...+ ++.
T Consensus 329 ~~~~-~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~-~~~ 406 (467)
T TIGR01318 329 NARE-EGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW-LAG 406 (467)
T ss_pred HHHh-cCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccc-ccc
Confidence 2344 799999997654 22 2233344421 10 01234579999999999999986432 245
Q ss_pred ccccc-CCCceeeC----CCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 380 INVVT-QRGFVPVD----ERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 380 ~~l~~-~~G~i~Vd----~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
.++.. ++|+|.|| ++++ |+.|+|||+|||++.+.++..|+.+|+.||.+|.
T Consensus 407 ~gl~~~~~g~i~vd~~~~~~~~------T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 407 HGITLDSWGRIITGDVSYLPYQ------TTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred cCccCCCCCCEEeCCccccCcc------CCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 56665 67899999 5677 8899999999999888888999999999999986
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=2.4e-28 Score=267.45 Aligned_cols=278 Identities=18% Similarity=0.248 Sum_probs=190.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...+|+|||||||||++|..|++.|++|+|||+ +.+||.+.+ .+|...+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~--gip~~~l---------------------------- 375 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF--GIPAFKL---------------------------- 375 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee--cCCCccC----------------------------
Confidence 347999999999999999999999999999999 778887543 1332110
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCC-CCCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP-FVPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p-~~p~~~~~~~~~v~ 257 (551)
+ ..+.......++..|+++..++.... .+.+.+ ....||+|++|||+.+ ..+++++.+..+++
T Consensus 376 ~------------~~~~~~~~~~~~~~Gv~~~~~~~v~~---~i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~ 439 (654)
T PRK12769 376 D------------KSLLARRREIFSAMGIEFELNCEVGK---DISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVY 439 (654)
T ss_pred C------------HHHHHHHHHHHHHCCeEEECCCEeCC---cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeE
Confidence 0 11112223445667999887763311 111111 1246999999999874 34455554444454
Q ss_pred cchhh--------hc---------cccCCceEEEECCChhHHHHHHHHHhCCC-eEEEEcccCcC-CCCCCHHHHHHHHH
Q 008850 258 TSDHA--------LK---------LEFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQL-MPGFDPEIGKLAQR 318 (551)
Q Consensus 258 ~~~~~--------~~---------~~~~~k~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~ 318 (551)
+..++ .. ....+++|+|||+|++|+|+|..+.+.|. +|+++++++.. ++..+.++ +
T Consensus 440 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~-----~ 514 (654)
T PRK12769 440 DALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEV-----K 514 (654)
T ss_pred EhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHH-----H
Confidence 32211 11 11346899999999999999999999985 79999987653 55443332 3
Q ss_pred HHhCCCceEEEeceEEE---e--CCCcEEEEEec---------ccC-----CCCCeEEecCEEEEeecCCCCCCCCCCcc
Q 008850 319 VLINPRKIDYHTGVFAT---K--DGKPVTIELID---------AKT-----KEPKDTLEVDAALIATGRAPFTNGLGLEN 379 (551)
Q Consensus 319 ~l~~~~gi~~~~~~~~~---~--~~~~~~v~~~~---------g~~-----~~~~~~i~~D~vi~a~G~~p~~~~l~l~~ 379 (551)
.+++ .||+++++..++ . ++....|++.. |.. .++..++++|.||+|+|+.|+...+ ++.
T Consensus 515 ~~~~-~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~ 592 (654)
T PRK12769 515 NARE-EGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPW-LES 592 (654)
T ss_pred HHHH-cCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccc-ccc
Confidence 3444 799999886554 2 23333444421 110 1223479999999999999986432 355
Q ss_pred ccccc-CCCceeeCC----CCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 380 INVVT-QRGFVPVDE----RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 380 ~~l~~-~~G~i~Vd~----~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
.++.. .+|.|.||+ +++ |+.|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 593 ~gl~~~~~G~i~vd~~~~~~~~------Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 593 HGVTVDKWGRIIADVESQYRYQ------TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred cCCcCCCCCCEEeCCCcccCcc------cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHH
Confidence 66766 678999986 477 8999999999999888899999999999999986
No 66
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.2e-28 Score=213.99 Aligned_cols=284 Identities=23% Similarity=0.302 Sum_probs=203.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc-----cCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV-----VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH 174 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~-----~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 174 (551)
.+.+|+|||+|||+.+||+.+++..++.+|+|--. .||+.....-+ + ..+|++..
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~v------------------e--NfPGFPdg 66 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDV------------------E--NFPGFPDG 66 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeecc------------------c--cCCCCCcc
Confidence 34589999999999999999999999999999632 34543321100 0 11233332
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeC----CcEEEeCcceEEEeCeEEEeCCCCCC---CCC
Q 008850 175 AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFGTDNIVTAKDIIIATGSVPF---VPK 247 (551)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~v~~~~g~~i~~d~lVlAtG~~p~---~p~ 247 (551)
+.. .++.+.++++.++.|.+++..++..++ ++.+.++. +.+.+|.||+|||+..+ +|+
T Consensus 67 ---i~G-----------~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~-~~v~~~avI~atGAsAkRl~~pg 131 (322)
T KOG0404|consen 67 ---ITG-----------PELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDA-RPVTADAVILATGASAKRLHLPG 131 (322)
T ss_pred ---ccc-----------HHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEecC-CceeeeeEEEecccceeeeecCC
Confidence 222 334445566677789999988876443 45666644 67999999999998865 343
Q ss_pred -Ccc-CCCceeecchhhhccc--cCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCC
Q 008850 248 -GIE-VDGKTVITSDHALKLE--FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINP 323 (551)
Q Consensus 248 -~~~-~~~~~v~~~~~~~~~~--~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~ 323 (551)
+.+ ++.+++-.|.-|+... +.+|..+|||||.+++|-|.+|.+.+.+|++++|++.|. .+..+++..++.
T Consensus 132 ~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fR------As~~Mq~ra~~n 205 (322)
T KOG0404|consen 132 EGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFR------ASKIMQQRAEKN 205 (322)
T ss_pred CCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhh------HHHHHHHHHhcC
Confidence 233 6667777776666554 678999999999999999999999999999999999873 344555555555
Q ss_pred CceEEEeceEEE---eCCC-cEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccc
Q 008850 324 RKIDYHTGVFAT---KDGK-PVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVI 398 (551)
Q Consensus 324 ~gi~~~~~~~~~---~~~~-~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~ 398 (551)
.+|+++.+.... .+++ .-.+.+.+..++ +...++++-+++++|..|++.++.- .++. .+|+|.+-+.--.
T Consensus 206 pnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tg-e~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~- 280 (322)
T KOG0404|consen 206 PNIEVLYNTVAVEALGDGKLLNGLRIKNVKTG-EETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSL- 280 (322)
T ss_pred CCeEEEechhhhhhccCcccccceEEEecccC-cccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCccc-
Confidence 899999998776 3322 223455554333 3468999999999999999998842 3454 7899988754322
Q ss_pred cCCCCCCCcEEEecCCCCC-CCcHHHHHHHHHHHHH
Q 008850 399 DANGNLVPHLYCIGDANGK-MMLAHAASAQGISVVE 433 (551)
Q Consensus 399 ~~~~t~~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~ 433 (551)
|++|++||+||+.+. ++.+..|...|.++|-
T Consensus 281 ----TsvpG~FAAGDVqD~kyRQAvTaAgsGciaal 312 (322)
T KOG0404|consen 281 ----TSVPGVFAAGDVQDKKYRQAVTAAGSGCIAAL 312 (322)
T ss_pred ----ccccceeeccccchHHHHHHHhhhccchhhhh
Confidence 899999999999865 5667777777766653
No 67
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.96 E-value=3.2e-27 Score=249.24 Aligned_cols=281 Identities=18% Similarity=0.243 Sum_probs=186.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..+|+|||+|++|+++|..|++.|++|+|||+ +.+||.+.+. +|... .+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g--ip~~~----------------------------~~ 192 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG--IPNMK----------------------------LD 192 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc--CCCcc----------------------------CC
Confidence 36999999999999999999999999999999 6678765321 22110 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCC-CCCCCCccCCCceeec
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVIT 258 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~~ 258 (551)
..+.......++..||+++.++.... .+.. +.....||+||+|||+. |..+++++.+..++++
T Consensus 193 ------------~~~~~~~~~~~~~~Gv~~~~~~~v~~---~~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~ 256 (485)
T TIGR01317 193 ------------KAIVDRRIDLLSAEGIDFVTNTEIGV---DISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHY 256 (485)
T ss_pred ------------HHHHHHHHHHHHhCCCEEECCCEeCC---ccCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEe
Confidence 01111222455667999988864421 1111 12235799999999998 7877777766556665
Q ss_pred chhhh----------------ccccCCceEEEECCChhHHHHHHHHHhCC-CeEEEEcccCcCCCCCC---------H--
Q 008850 259 SDHAL----------------KLEFVPDWIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQLMPGFD---------P-- 310 (551)
Q Consensus 259 ~~~~~----------------~~~~~~k~v~VvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~~~~---------~-- 310 (551)
..+++ .....+|+|+|||+|++|+|+|..+.+.| .+|+++++.+..+.... .
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~ 336 (485)
T TIGR01317 257 AMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVY 336 (485)
T ss_pred HHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhh
Confidence 43221 11135799999999999999988887776 57999988776543211 1
Q ss_pred HHHHHHHHHHhCCCceEE-EeceEEE---eC--CCcEEEEEe--------ccc-----CCCCCeEEecCEEEEeecCC-C
Q 008850 311 EIGKLAQRVLINPRKIDY-HTGVFAT---KD--GKPVTIELI--------DAK-----TKEPKDTLEVDAALIATGRA-P 370 (551)
Q Consensus 311 ~~~~~~~~~l~~~~gi~~-~~~~~~~---~~--~~~~~v~~~--------~g~-----~~~~~~~i~~D~vi~a~G~~-p 370 (551)
+.....++..+. .||.+ +++..+. .+ +....+++. +|. ..++..++++|.||+++|+. |
T Consensus 337 e~~~a~~e~~~~-~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p 415 (485)
T TIGR01317 337 RVDYAHEEAAAH-YGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGP 415 (485)
T ss_pred hhHHHHHhhhhh-cCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCC
Confidence 112223333322 45543 2332222 22 233334431 111 01233579999999999996 8
Q ss_pred CCCCCCCccccccc-CCCceee-CCCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 371 FTNGLGLENINVVT-QRGFVPV-DERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 371 ~~~~l~l~~~~l~~-~~G~i~V-d~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
++.++ +..++.. .+|++.+ |++++ |+.|||||+|||+..+.++..|+.+|+.||.+|.
T Consensus 416 ~~~~~--~~~gl~~~~~G~i~~~~~~~~------Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 416 EQILL--DDFGVKKTRRGNISAGYDDYS------TSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVD 475 (485)
T ss_pred ccccc--cccCcccCCCCCEEecCCCce------ECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHH
Confidence 88765 4556664 6788854 56788 8999999999999888889999999999999985
No 68
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.96 E-value=7.5e-28 Score=233.55 Aligned_cols=289 Identities=21% Similarity=0.280 Sum_probs=202.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccc
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (551)
...+.+|||+|+|++|++....|-...++|+||.+ +.+-=+++ +||-. -.
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----LpS~~-------------------------vG 102 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----LPSTT-------------------------VG 102 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----cCCcc-------------------------cc
Confidence 34557999999999999999999988999999987 43222222 12110 11
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeC--CcEEEe----Ccc----eEEEeCeEEEeCCCCCCCC
Q 008850 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKF----GTD----NIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~~----~~g----~~i~~d~lVlAtG~~p~~p 246 (551)
..+.+.+.+........ ..-++.+++.+...+| .+.|.+ +++ ..+.||+||+|+|+.|..+
T Consensus 103 Tve~rSIvEPIr~i~r~---------k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 103 TVELRSIVEPIRAIARK---------KNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred ceeehhhhhhHHHHhhc---------cCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 22333333222222111 1126777777766554 344443 233 5789999999999999988
Q ss_pred CCccCCCceee--cchhhhcc-----------cc---------CCceEEEECCChhHHHHHHHHHhC-------------
Q 008850 247 KGIEVDGKTVI--TSDHALKL-----------EF---------VPDWIAIVGSGYIGLEFSDVYTAL------------- 291 (551)
Q Consensus 247 ~~~~~~~~~v~--~~~~~~~~-----------~~---------~~k~v~VvG~G~~g~e~A~~l~~~------------- 291 (551)
++++......+ ...++.+. .. +--+++|||||++|+|+|.+|+..
T Consensus 174 gipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~ 253 (491)
T KOG2495|consen 174 GIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELK 253 (491)
T ss_pred CCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcch
Confidence 87765443221 11222111 11 113789999999999999998753
Q ss_pred -CCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE-eCCCcEEEEEecccCCCCCeEEecCEEEEeecCC
Q 008850 292 -GSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 369 (551)
Q Consensus 292 -g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~-~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 369 (551)
-.+||+++..+.+++.||..+.++.++.+.+ .+|++..++.+. .+++.+.+...+| +.++|++-+++|+||..
T Consensus 254 ~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~-~~I~~~~~t~Vk~V~~~~I~~~~~~g----~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 254 KDIKVTLIEAADHILNMFDKRLVEYAENQFVR-DGIDLDTGTMVKKVTEKTIHAKTKDG----EIEEIPYGLLVWATGNG 328 (491)
T ss_pred hheEEEeeccchhHHHHHHHHHHHHHHHHhhh-ccceeecccEEEeecCcEEEEEcCCC----ceeeecceEEEecCCCC
Confidence 2589999999999999999999999999987 899999998887 6666666665544 34789999999999987
Q ss_pred CCCC--CCCCcccccccCCCceeeCCCCccccCCCCCCCcEEEecCCCC---CCCcHHHHHHHHHHHHHHHc
Q 008850 370 PFTN--GLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANG---KMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 370 p~~~--~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~---~~~~~~~A~~~g~~aa~~i~ 436 (551)
|..- .|. +..+-. .+..+.|||+||+ ...+||||+|||+. .++++++|.+||.++|+++-
T Consensus 329 ~rp~~k~lm-~~i~e~-~rr~L~vDE~LrV-----~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 329 PRPVIKDLM-KQIDEQ-GRRGLAVDEWLRV-----KGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred CchhhhhHh-hcCCcc-Cceeeeeeceeec-----cCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence 6543 221 111111 1226999999999 89999999999983 35689999999999999974
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=2.8e-27 Score=257.61 Aligned_cols=278 Identities=19% Similarity=0.207 Sum_probs=187.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...+|+|||+|+||+++|..|+++|++|+|+|+ +..||.+.+. +|... .
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~--i~~~~----------------------------~ 331 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG--IPSYR----------------------------L 331 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec--CCccc----------------------------C
Confidence 457899999999999999999999999999999 6677754321 22110 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCC-CCCCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~ 257 (551)
. +++.......++..|++++.++....+ +..++ ....||+||||||+. |+.+++++.+..+++
T Consensus 332 ~------------~~~~~~~~~~~~~~gv~~~~~~~v~~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~ 395 (604)
T PRK13984 332 P------------DEALDKDIAFIEALGVKIHLNTRVGKD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVI 395 (604)
T ss_pred C------------HHHHHHHHHHHHHCCcEEECCCEeCCc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeE
Confidence 0 111112223556689999887643211 11222 235799999999987 566677766555666
Q ss_pred cchhhhc-c----------ccCCceEEEECCChhHHHHHHHHHhCC------CeEEEEccc--CcCCCCCCHHHHHHHHH
Q 008850 258 TSDHALK-L----------EFVPDWIAIVGSGYIGLEFSDVYTALG------SEVTFIEAL--DQLMPGFDPEIGKLAQR 318 (551)
Q Consensus 258 ~~~~~~~-~----------~~~~k~v~VvG~G~~g~e~A~~l~~~g------~~Vtlv~~~--~~~l~~~~~~~~~~~~~ 318 (551)
+..++.. + ...+++|+|||||++|+|+|..+.+++ .+|+++... ...++....+ +.+
T Consensus 396 ~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e----~~~ 471 (604)
T PRK13984 396 QALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEE----IEE 471 (604)
T ss_pred eHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHH----HHH
Confidence 5544332 1 123689999999999999999999875 378887432 2223322222 233
Q ss_pred HHhCCCceEEEeceEEE----eCCCcEEEEEec--------cc-----CCCCCeEEecCEEEEeecCCCCCCCCCCc-cc
Q 008850 319 VLINPRKIDYHTGVFAT----KDGKPVTIELID--------AK-----TKEPKDTLEVDAALIATGRAPFTNGLGLE-NI 380 (551)
Q Consensus 319 ~l~~~~gi~~~~~~~~~----~~~~~~~v~~~~--------g~-----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~-~~ 380 (551)
.+ + .||+++.+..+. .++....+++.. |. ..++..++++|.|++++|++|+++++..+ ..
T Consensus 472 ~~-~-~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~ 549 (604)
T PRK13984 472 GL-E-EGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKS 549 (604)
T ss_pred HH-H-cCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhcc
Confidence 33 3 689999876544 233333444431 10 01233579999999999999998876421 12
Q ss_pred ccccCCCceeeCCCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 381 NVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 381 ~l~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
++..++|+|.||++++ |++|+|||+|||+..+. ...|+.+|+.||.+|.
T Consensus 550 ~l~~~~G~i~vd~~~~------Ts~~gVfAaGD~~~~~~-~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 550 KLEFVRGRILTNEYGQ------TSIPWLFAGGDIVHGPD-IIHGVADGYWAAEGID 598 (604)
T ss_pred CccccCCeEEeCCCCc------cCCCCEEEecCcCCchH-HHHHHHHHHHHHHHHH
Confidence 3444678999999999 89999999999998775 4679999999999985
No 70
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=5.5e-27 Score=255.60 Aligned_cols=278 Identities=18% Similarity=0.266 Sum_probs=189.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..+|+|||+||+||++|..|++.|++|+|+|+ +.+||.+.+ +. |... ++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~-gi-p~~~----------------------------l~ 359 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF-GI-PPFK----------------------------LD 359 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec-cC-Cccc----------------------------CC
Confidence 57999999999999999999999999999999 678887542 22 2110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCC-CCCCCccCCCceeec
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP-FVPKGIEVDGKTVIT 258 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p-~~p~~~~~~~~~v~~ 258 (551)
..+.......+...||+++.+.... ..+.+.+ ....||+|++|||+.+ ..+++++.+..++++
T Consensus 360 ------------~~~~~~~~~~~~~~Gv~~~~~~~v~---~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~ 423 (639)
T PRK12809 360 ------------KTVLSQRREIFTAMGIDFHLNCEIG---RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQ 423 (639)
T ss_pred ------------HHHHHHHHHHHHHCCeEEEcCCccC---CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEe
Confidence 1111222345566899998876321 1122222 2356999999999874 344555544444544
Q ss_pred chh--------hhcc---------ccCCceEEEECCChhHHHHHHHHHhCC-CeEEEEcccCcC-CCCCCHHHHHHHHHH
Q 008850 259 SDH--------ALKL---------EFVPDWIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQL-MPGFDPEIGKLAQRV 319 (551)
Q Consensus 259 ~~~--------~~~~---------~~~~k~v~VvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~-l~~~~~~~~~~~~~~ 319 (551)
.-+ ...+ ...+|+|+|||+|.++++.|..+.+.| .+||++++++.. ++....++. +
T Consensus 424 a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~----~- 498 (639)
T PRK12809 424 ALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV----N- 498 (639)
T ss_pred HHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH----H-
Confidence 211 1111 124689999999999999999988888 489999987654 554433332 2
Q ss_pred HhCCCceEEEeceEEE---eC--CCcEEEEEe---cccC-----------CCCCeEEecCEEEEeecCCCCCCCCCCccc
Q 008850 320 LINPRKIDYHTGVFAT---KD--GKPVTIELI---DAKT-----------KEPKDTLEVDAALIATGRAPFTNGLGLENI 380 (551)
Q Consensus 320 l~~~~gi~~~~~~~~~---~~--~~~~~v~~~---~g~~-----------~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~ 380 (551)
.++ .||+++++..+. .+ +....+++. .+.. .++...+++|.||+|+|+.|+...+ ++..
T Consensus 499 a~~-eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-~~~~ 576 (639)
T PRK12809 499 ARE-EGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW-LQGS 576 (639)
T ss_pred HHH-cCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccc-cccc
Confidence 233 699999887654 22 223233331 1100 1233579999999999999975433 3556
Q ss_pred cccc-CCCceeeCCC----CccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcC
Q 008850 381 NVVT-QRGFVPVDER----MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 381 ~l~~-~~G~i~Vd~~----~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 437 (551)
++.. ++|+|.||++ ++ |+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 577 gl~~~~~G~i~vd~~~~~~~~------Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 577 GIKLDKWGLIQTGDVGYLPTQ------THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred CcccCCCCCEEeCCCcccCcc------cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 6766 6788999863 67 89999999999998888899999999999999863
No 71
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=225.73 Aligned_cols=281 Identities=24% Similarity=0.328 Sum_probs=202.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhc-Ccccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKAL-GLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 178 (551)
..|||+||||||||-+||++.+|+|.+.-++- +++||+.+..-.+ +.| +.+ ..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a-erfGGQvldT~~I---------------------ENfIsv~----~t 263 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA-ERFGGQVLDTMGI---------------------ENFISVP----ET 263 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh-hhhCCeeccccch---------------------hheeccc----cc
Confidence 45999999999999999999999999876653 3577765422100 000 111 11
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-E-------eCCcEEEeCcceEEEeCeEEEeCCCCCC---CCC
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-I-------LGPQKVKFGTDNIVTAKDIIIATGSVPF---VPK 247 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-------~~~~~v~~~~g~~i~~d~lVlAtG~~p~---~p~ 247 (551)
+. .++...++.+.+.+.|++...... . -+-..|++.+|..+.++.+|||||++.+ +|+
T Consensus 264 eG-----------pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPG 332 (520)
T COG3634 264 EG-----------PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPG 332 (520)
T ss_pred cc-----------hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCc
Confidence 11 344445555666666666544311 1 1245788899999999999999999865 555
Q ss_pred CccCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceE
Q 008850 248 GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKID 327 (551)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~ 327 (551)
..++..+++-.|.+|....+.+|+|+|||||++|+|.|..|+..-.+||+++-.+.+. .-+.+++.+..-.+++
T Consensus 333 E~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~ 406 (520)
T COG3634 333 EDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVT 406 (520)
T ss_pred hHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh------hHHHHHHHHhcCCCcE
Confidence 5557778899999999988999999999999999999999999889999998665442 2234566666557899
Q ss_pred EEeceEEE---eCC-CcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008850 328 YHTGVFAT---KDG-KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 402 (551)
Q Consensus 328 ~~~~~~~~---~~~-~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~ 402 (551)
++++...+ .++ +...+...+-.+ ++...++-+-|++-+|..||+++|. .. ++. ++|-|.||....
T Consensus 407 ii~na~Ttei~Gdg~kV~Gl~Y~dr~s-ge~~~l~LeGvFVqIGL~PNT~WLk--g~-vel~~rGEIivD~~g~------ 476 (520)
T COG3634 407 IITNAQTTEVKGDGDKVTGLEYRDRVS-GEEHHLELEGVFVQIGLLPNTEWLK--GA-VELNRRGEIIVDARGE------ 476 (520)
T ss_pred EEecceeeEEecCCceecceEEEeccC-CceeEEEeeeeEEEEecccChhHhh--ch-hhcCcCccEEEecCCC------
Confidence 99987655 343 344566655433 3345788899999999999999984 33 444 899999999999
Q ss_pred CCCCcEEEecCCCCCC-CcHHHHHHHHHHHHH
Q 008850 403 NLVPHLYCIGDANGKM-MLAHAASAQGISVVE 433 (551)
Q Consensus 403 t~~~~IyA~GD~~~~~-~~~~~A~~~g~~aa~ 433 (551)
||+|+|||+|||+..+ +....|+.+|..|+-
T Consensus 477 TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL 508 (520)
T COG3634 477 TNVPGVFAAGDCTTVPYKQIIIAMGEGAKASL 508 (520)
T ss_pred cCCCceeecCcccCCccceEEEEecCcchhhh
Confidence 8999999999998653 455555555544443
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=9.4e-26 Score=234.31 Aligned_cols=285 Identities=16% Similarity=0.175 Sum_probs=186.1
Q ss_pred cccEEEECCChHHHHHHHHHHH--cCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVE--KGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~--~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
..+|+|||||||||+||..|++ .|++|+|||+ +.+||.+. .+..|.+..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr-~gvaP~~~~--------------------------- 77 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR-SGVAPDHPE--------------------------- 77 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe-eccCCCcch---------------------------
Confidence 4689999999999999999987 6999999999 77888543 232232111
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCC-CCCCCccCCCcee
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP-FVPKGIEVDGKTV 256 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p-~~p~~~~~~~~~v 256 (551)
...+...+...+...+|+++.+... ...+++++. ...||+||||||+.+ ..+++++.+..++
T Consensus 78 -------------~k~v~~~~~~~~~~~~v~~~~nv~v---g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV 140 (491)
T PLN02852 78 -------------TKNVTNQFSRVATDDRVSFFGNVTL---GRDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGV 140 (491)
T ss_pred -------------hHHHHHHHHHHHHHCCeEEEcCEEE---CccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCe
Confidence 0112222233445568887765322 123344332 247999999999985 5666777666677
Q ss_pred ecchhhhc----------c---ccCCceEEEECCChhHHHHHHHHHhC--------------------C-CeEEEEcccC
Q 008850 257 ITSDHALK----------L---EFVPDWIAIVGSGYIGLEFSDVYTAL--------------------G-SEVTFIEALD 302 (551)
Q Consensus 257 ~~~~~~~~----------~---~~~~k~v~VvG~G~~g~e~A~~l~~~--------------------g-~~Vtlv~~~~ 302 (551)
++..++.. + ...+++|+|||+|++|+|+|..|.+. + .+|+++.|+.
T Consensus 141 ~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg 220 (491)
T PLN02852 141 LSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRG 220 (491)
T ss_pred EEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCC
Confidence 77665531 1 12468999999999999999998875 5 4699999876
Q ss_pred cCCCCC-CHHHH-------------------------------------HHHHHHH-hC-------CCceEEEeceEEE-
Q 008850 303 QLMPGF-DPEIG-------------------------------------KLAQRVL-IN-------PRKIDYHTGVFAT- 335 (551)
Q Consensus 303 ~~l~~~-~~~~~-------------------------------------~~~~~~l-~~-------~~gi~~~~~~~~~- 335 (551)
..-..| ..|+. +.+.+.. +. ..+|.+++.....
T Consensus 221 ~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~e 300 (491)
T PLN02852 221 PVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTR 300 (491)
T ss_pred hHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeE
Confidence 321111 11111 1222221 11 1467777765444
Q ss_pred -e---C--CCcEEEEEec---------cc----CCCCCeEEecCEEEEeecCC--CCCCC-CCCcccccc-cCCCceeeC
Q 008850 336 -K---D--GKPVTIELID---------AK----TKEPKDTLEVDAALIATGRA--PFTNG-LGLENINVV-TQRGFVPVD 392 (551)
Q Consensus 336 -~---~--~~~~~v~~~~---------g~----~~~~~~~i~~D~vi~a~G~~--p~~~~-l~l~~~~l~-~~~G~i~Vd 392 (551)
. + +....+++.. +. ..++.+.++||.||.++|++ |...+ +. ...++. ..+|+|.+|
T Consensus 301 i~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~gv~~n~~G~V~~d 379 (491)
T PLN02852 301 FLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRGVVPNVHGRVLSS 379 (491)
T ss_pred EEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccc-cCcCeeECCCceEEeC
Confidence 1 1 2344455532 11 12334579999999999998 55442 22 222333 368999999
Q ss_pred CCCccccCCCCCCCcEEEecCCCCCCC-cHHHHHHHHHHHHHHHcC
Q 008850 393 ERMRVIDANGNLVPHLYCIGDANGKMM-LAHAASAQGISVVEQVTG 437 (551)
Q Consensus 393 ~~~~~~~~~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~g 437 (551)
+.++ |++|||||+|||..+|. +...++.+|+.++++|..
T Consensus 380 ~~~~------T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 380 ASGA------DTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAE 419 (491)
T ss_pred CCCc------cCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHH
Confidence 8887 89999999999987654 888899999999999873
No 73
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.94 E-value=5.8e-25 Score=237.23 Aligned_cols=278 Identities=21% Similarity=0.266 Sum_probs=184.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...+|+|||+||+||++|..|+++|++|+|+|+ +.+||.+.+. +|... +
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g--ip~~~----------------------------~ 185 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG--IPAYR----------------------------L 185 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec--CCCcc----------------------------C
Confidence 346899999999999999999999999999999 7788865321 22111 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCC-CCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPF-VPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~-~p~~~~~~~~~v~ 257 (551)
. .++.......+.+.|+++..+.....+ +...+ ....||+||+|||+.+. .+.+.+....+++
T Consensus 186 ~------------~~~~~~~l~~~~~~Gv~~~~~~~~~~~---~~~~~-~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~ 249 (564)
T PRK12771 186 P------------REVLDAEIQRILDLGVEVRLGVRVGED---ITLEQ-LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVL 249 (564)
T ss_pred C------------HHHHHHHHHHHHHCCCEEEeCCEECCc---CCHHH-HHhhCCEEEEeeCCCCCCcCCCCCCccCCcE
Confidence 1 011111122345678888776532111 11111 12358999999998753 3333333323333
Q ss_pred cchhhh------ccccCCceEEEECCChhHHHHHHHHHhCC-CeEEEEcccCc-CCCCCCHHHHHHHHHHHhCCCceEEE
Q 008850 258 TSDHAL------KLEFVPDWIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQ-LMPGFDPEIGKLAQRVLINPRKIDYH 329 (551)
Q Consensus 258 ~~~~~~------~~~~~~k~v~VvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~~gi~~~ 329 (551)
+.-++. .....+++++|||+|.++++.+..+.+++ .+|+++.+.+. .++....++ .+.. + .||+++
T Consensus 250 ~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~----~~a~-~-~GVki~ 323 (564)
T PRK12771 250 DAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI----EEAL-R-EGVEIN 323 (564)
T ss_pred EHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH----HHHH-H-cCCEEE
Confidence 322221 12234799999999999999999999998 78999988764 234333332 2222 3 689999
Q ss_pred eceEEE---eC-CCcEEEEE---e------ccc---CCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCC
Q 008850 330 TGVFAT---KD-GKPVTIEL---I------DAK---TKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDE 393 (551)
Q Consensus 330 ~~~~~~---~~-~~~~~v~~---~------~g~---~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~ 393 (551)
++..+. .+ ++...+++ . +|. ..++..++++|.||+|+|+.|++.++. ...++..++|+|.||+
T Consensus 324 ~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~-~~~gl~~~~G~i~vd~ 402 (564)
T PRK12771 324 WLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLE-SVPGVEVGRGVVQVDP 402 (564)
T ss_pred ecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhh-hccCcccCCCCEEeCC
Confidence 876554 22 22222221 1 110 022335899999999999999987663 1234555789999998
Q ss_pred -CCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 394 -RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 394 -~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
+++ |+.|||||+|||+..+.++..|+.+|+.||.+|.
T Consensus 403 ~~~~------ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 403 NFMM------TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred CCcc------CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 566 8999999999999888899999999999999984
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=1.3e-24 Score=246.92 Aligned_cols=276 Identities=19% Similarity=0.184 Sum_probs=184.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCc-cCChhhHhhHHHHHHHHhhhhhhhcCccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
..+||+|||||||||+||..|++.|++|+|||+ +.+||.+..... ++ .
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~------------------------------g 211 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETID------------------------------G 211 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccC------------------------------C
Confidence 468999999999999999999999999999999 778887643210 00 0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHc-CeEEEeceEE-Ee-CCcEEE----------------e-CcceEEEeCeEEE
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGT-IL-GPQKVK----------------F-GTDNIVTAKDIII 237 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~-~~~~v~----------------~-~~g~~i~~d~lVl 237 (551)
.+. .++...+...+... +++++.++.. .+ +...+. . +...++.||+|||
T Consensus 212 ~~~-----------~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VIL 280 (985)
T TIGR01372 212 KPA-----------ADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVL 280 (985)
T ss_pred ccH-----------HHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEE
Confidence 111 11111222333334 4777765422 11 111110 0 0112689999999
Q ss_pred eCCCCCCCCCCccCCCceeecchhhhcc----c-cCCceEEEECCChhHHHHHHHHHhCCC-eEEEEcccCcCCCCCCHH
Q 008850 238 ATGSVPFVPKGIEVDGKTVITSDHALKL----E-FVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQLMPGFDPE 311 (551)
Q Consensus 238 AtG~~p~~p~~~~~~~~~v~~~~~~~~~----~-~~~k~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~ 311 (551)
|||+.|+.|++++.+..++++...+..+ . ..+++|+|||+|++++|+|..|.+.|. .|+++++.+.+
T Consensus 281 ATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------- 353 (985)
T TIGR01372 281 ATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------- 353 (985)
T ss_pred cCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------
Confidence 9999999888877666677766444322 1 246999999999999999999999995 57888876543
Q ss_pred HHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCc
Q 008850 312 IGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGF 388 (551)
Q Consensus 312 ~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~ 388 (551)
...+.+.+++ .||+++.+..+. .++....|++... .++.+++++|.|+++.|++||++++. ..+. .
T Consensus 354 -~~~l~~~L~~-~GV~i~~~~~v~~i~g~~~v~~V~l~~~--~g~~~~i~~D~V~va~G~~Pnt~L~~--~lg~-----~ 422 (985)
T TIGR01372 354 -SPEARAEARE-LGIEVLTGHVVAATEGGKRVSGVAVARN--GGAGQRLEADALAVSGGWTPVVHLFS--QRGG-----K 422 (985)
T ss_pred -hHHHHHHHHH-cCCEEEcCCeEEEEecCCcEEEEEEEec--CCceEEEECCEEEEcCCcCchhHHHH--hcCC-----C
Confidence 2234556665 899999998877 2333334555421 12346899999999999999998552 2221 1
Q ss_pred eeeCCCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 389 VPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 389 i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
+..|+....... .|++|+||++|||++.. .+..|+.+|+.||..|+
T Consensus 423 ~~~~~~~~~~~~-~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 423 LAWDAAIAAFLP-GDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred eeeccccCceec-CCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence 223322111000 16789999999999764 56779999999998885
No 75
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=1.6e-24 Score=226.06 Aligned_cols=296 Identities=16% Similarity=0.179 Sum_probs=184.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccC--------ChhhHhhHHHHHHHHhh-----hhh
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVP--------SKALLAVSGRMRELQSE-----HHM 166 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p--------~~~~~~~~~~~~~~~~~-----~~~ 166 (551)
.++|+|||||++||+||++|++.|++|+|+|+ +.+||+|.+....+ .+.... +..++.+... ..+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~-s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVH-SSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccc-hhhhhhhhccCCHhhccC
Confidence 47999999999999999999999999999999 78999998754322 111111 1112222111 111
Q ss_pred hhcCcccc--------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeE--EEece-EEEe----CCcEEEeCcc----
Q 008850 167 KALGLQVH--------AAGYDRQGVADHANNLATKIRNNLTNSMKALGVD--ILTGV-GTIL----GPQKVKFGTD---- 227 (551)
Q Consensus 167 ~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~-~~~~----~~~~v~~~~g---- 227 (551)
.++.+... ...+...++. .+++...+..++. +..++ +..+ +.+.|.+.++
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~-----------~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~ 157 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVL-----------AYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFS 157 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHH-----------HHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCce
Confidence 12222110 0112333343 4444445555655 44443 2222 2356665421
Q ss_pred eEEEeCeEEEeCC--CCCCCCCCcc---CCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 228 NIVTAKDIIIATG--SVPFVPKGIE---VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 228 ~~i~~d~lVlAtG--~~p~~p~~~~---~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
.+..||+||+||| +.|++|++++ +.|..+++......-...+|+|+|||+|.+|+|+|..|.+.+.+|++++|+.
T Consensus 158 ~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 158 KDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 2467999999999 6788887655 4455555554443334578999999999999999999999999999999876
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE--eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccc
Q 008850 303 QLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT--KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENI 380 (551)
Q Consensus 303 ~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~--~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~ 380 (551)
.+.. ..+......++. .+..+. .+++ .|++.|| +.+++|.||+|||++|+.++|. .
T Consensus 238 ~~~~---------~~~~~~~~~~v~--~~~~I~~~~~~g--~V~f~DG------~~~~~D~Ii~~TGy~~~~pfL~--~- 295 (461)
T PLN02172 238 ESDT---------YEKLPVPQNNLW--MHSEIDTAHEDG--SIVFKNG------KVVYADTIVHCTGYKYHFPFLE--T- 295 (461)
T ss_pred cccc---------cccCcCCCCceE--ECCcccceecCC--eEEECCC------CCccCCEEEECCcCCccccccC--c-
Confidence 4311 000111112333 333232 2222 3778776 5688999999999999999873 2
Q ss_pred ccccCCCceeeCCCC------ccccCCCCC-CCcEEEecCCCCCCCcHHHHHHHHHHHHHHHcCCC
Q 008850 381 NVVTQRGFVPVDERM------RVIDANGNL-VPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD 439 (551)
Q Consensus 381 ~l~~~~G~i~Vd~~~------~~~~~~~t~-~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 439 (551)
.|.+.+|++. ++.. .. .|+++.+|=.. .......+..|++.+|+-+.|+.
T Consensus 296 -----~~~i~v~~~~v~~Ly~~~f~---~~~~p~LafiG~~~-~~~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 296 -----NGYMRIDENRVEPLYKHVFP---PALAPGLSFIGLPA-MGIQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred -----ccceeeCCCcchhhHHhhcC---CCCCCcEEEEeccc-cccCchhHHHHHHHHHHHHcCCC
Confidence 2334454321 1111 23 38999999653 22456778899999999998863
No 76
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=219.92 Aligned_cols=289 Identities=24% Similarity=0.261 Sum_probs=208.1
Q ss_pred HcCeEEEece-EEEeC--CcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCCceeecc---hhhhccc---cCCceEEE
Q 008850 204 ALGVDILTGV-GTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITS---DHALKLE---FVPDWIAI 274 (551)
Q Consensus 204 ~~~v~~~~~~-~~~~~--~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~~~v~~~---~~~~~~~---~~~k~v~V 274 (551)
..++++..+. +..++ .+.+.+.++ ++.||+||+|||+.|..++.... ..+++. ++..... ...++++|
T Consensus 65 ~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v 141 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPPISDW--EGVVTLRLREDAEALKGGAEPPKDVVV 141 (415)
T ss_pred hhCCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCCcccc--CceEEECCHHHHHHHHHHHhccCeEEE
Confidence 4578877765 33443 578888887 89999999999999988771112 223322 2222211 12489999
Q ss_pred ECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCC-HHHHHHHHHHHhCCCceEEEeceEEE-eC--CCcEE---EEEec
Q 008850 275 VGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFD-PEIGKLAQRVLINPRKIDYHTGVFAT-KD--GKPVT---IELID 347 (551)
Q Consensus 275 vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~-~~~~~~~~~~l~~~~gi~~~~~~~~~-~~--~~~~~---v~~~~ 347 (551)
+|+|++|+|+|..+++.|.+|++++..+++++.+. +++.+.+.+.+++ +||+++++..+. .+ .+... +...+
T Consensus 142 vG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~ 220 (415)
T COG0446 142 VGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEK-YGVELLLGTKVVGVEGKGNTLVVERVVGID 220 (415)
T ss_pred ECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHH-CCcEEEeCCceEEEEcccCcceeeEEEEeC
Confidence 99999999999999999999999999999998877 8899999999987 899999998876 22 22212 33333
Q ss_pred ccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCC-CCcEEEecCCCCC---------
Q 008850 348 AKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNL-VPHLYCIGDANGK--------- 417 (551)
Q Consensus 348 g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~-~~~IyA~GD~~~~--------- 417 (551)
+ ..+++|.+++++|.+||..+......++...+|+|.||++++ |+ .++|||+|||+..
T Consensus 221 ~------~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~------~~~~~~v~a~GD~~~~~~~~~~~~~ 288 (415)
T COG0446 221 G------EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGG------TSKDPDVYAAGDVAEIPAAETGKGG 288 (415)
T ss_pred C------cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccc------cCCCCCEEeccceEeeecccCCcee
Confidence 3 689999999999999997655322223445888999999999 66 8999999998632
Q ss_pred -CCcHHHHHHHHHHHHHHHcCCCccCCCCCcce--EEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhhh-h
Q 008850 418 -MMLAHAASAQGISVVEQVTGRDHVLNHLSIPA--ACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKAL-A 493 (551)
Q Consensus 418 -~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~ 493 (551)
...++.+..++++++.++.+. ..+. ..++. ...........|+++. ++ ..++ .+.........+.. .
T Consensus 289 ~~~~~~~a~~~~~i~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~g~~~~--~~----~~~~-~~~~~~~~~~~~~~~~ 359 (415)
T COG0446 289 RIALWAIAVAAGRIAAENIAGA-LRIP-GLLGTVISDVGDLCAASTGLTEG--KE----RGID-VVLVVSGGKDPRAHLY 359 (415)
T ss_pred eeechhhHhhhhHHHHHHhccc-cccc-cccCceEEEEcCeEEEEecCCcc--cc----ccee-eeEEEeccCccccccc
Confidence 246778999999999999987 3321 23333 4445668899999997 22 2555 33444444444444 3
Q ss_pred cCCCceEEEEEEeCCCCCCcceeee
Q 008850 494 ENEGEGLAKGVPRNFASSERTNQHS 518 (551)
Q Consensus 494 ~~~~~~~~kli~~~~~~~~~lg~~~ 518 (551)
.+....-.|++++.+ +.+++|++.
T Consensus 360 ~~~~~~~~~~~~~~~-~~~~~~~~~ 383 (415)
T COG0446 360 PGAELVGIKLVGDAD-TGRILGGQE 383 (415)
T ss_pred CCCCeEEEEEEEcCc-ccceehhhh
Confidence 344456788888877 788888776
No 77
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.90 E-value=3.8e-22 Score=210.91 Aligned_cols=321 Identities=15% Similarity=0.137 Sum_probs=162.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCc-cCChhhHhhHHHHHHHHhhhhhhhcCcccccc-cc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAA-GY 178 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~ 178 (551)
.+|+|||||++||++|..|.+.|++++++|+ +.+||.|.+... -+...-.+.+-..........+.++.++.+.+ .+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 4799999999999999999999999999999 899999985321 01000000000000001112234444444433 33
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE----EeCCcEEEeCc-c--eEEEeCeEEEeCCCC--CCCCC--
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT----ILGPQKVKFGT-D--NIVTAKDIIIATGSV--PFVPK-- 247 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~v~~~~-g--~~i~~d~lVlAtG~~--p~~p~-- 247 (551)
...++.+|++.+++++... . .-+.+.++..-+.. ....|.|++.+ + ++..||+||+|||.. |++|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~--~-~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLR--K-HIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGG--G-GEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CHHHHHHHHHHHHhhhCCc--c-eEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 6678888887777765311 0 00122222211100 01236676643 2 345799999999954 66663
Q ss_pred Cc---cCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc-CCCCCCH-----H-------
Q 008850 248 GI---EVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LMPGFDP-----E------- 311 (551)
Q Consensus 248 ~~---~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~~~-----~------- 311 (551)
++ .+.|.-+|+.++-......+|+|+|||+|.+|+++|.+|++.+.+|++..|+.. ++|++.. +
T Consensus 159 ~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~ 238 (531)
T PF00743_consen 159 FPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRF 238 (531)
T ss_dssp -CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC------------------------
T ss_pred hhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccccccc
Confidence 33 355654454444444456799999999999999999999999999999888753 2332110 0
Q ss_pred -----------HHHHH-HHHHhC-----CCce--------------------------EEEeceEEEeCCCcEEEEEecc
Q 008850 312 -----------IGKLA-QRVLIN-----PRKI--------------------------DYHTGVFATKDGKPVTIELIDA 348 (551)
Q Consensus 312 -----------~~~~~-~~~l~~-----~~gi--------------------------~~~~~~~~~~~~~~~~v~~~~g 348 (551)
+...+ .+.+.+ ..|+ .+..+..- .++ -.+.+.||
T Consensus 239 ~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~-~~~--~~v~F~DG 315 (531)
T PF00743_consen 239 SSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKR-FTE--NSVIFEDG 315 (531)
T ss_dssp ------------------------------------------------------------EE-EEE-E-S--SEEEETTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc--cccccccc
Confidence 00111 001100 0111 00000000 111 13445555
Q ss_pred cCCCCCeE-EecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHH
Q 008850 349 KTKEPKDT-LEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQ 427 (551)
Q Consensus 349 ~~~~~~~~-i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~ 427 (551)
+. .++|.||+|||++...++|.- .-+...++.+..-.++-..+ -..|++..+|=+.........+..|
T Consensus 316 ------s~~e~vD~II~~TGY~~~fpFL~~--~~~~~~~~~~~LYk~vfp~~---~~~ptLafIG~~~~~g~~fp~~ElQ 384 (531)
T PF00743_consen 316 ------STEEDVDVIIFCTGYKFSFPFLDE--SLIKVDDNRVRLYKHVFPPN---LDHPTLAFIGLVQPFGSIFPIFELQ 384 (531)
T ss_dssp ------EEEEE-SEEEE---EE---TTB-T--TTT-S-SSSSSEETTTEETE---TTSTTEEESS-SBSSS-HHHHHHHH
T ss_pred ------cccccccccccccccccccccccc--cccccccccccccccccccc---ccccccccccccccccccccccccc
Confidence 44 479999999999998888742 21222333232222321100 1347899999764332356678999
Q ss_pred HHHHHHHHcCCC
Q 008850 428 GISVVEQVTGRD 439 (551)
Q Consensus 428 g~~aa~~i~g~~ 439 (551)
++.+++-+.|+.
T Consensus 385 Arw~a~v~sG~~ 396 (531)
T PF00743_consen 385 ARWAARVFSGRV 396 (531)
T ss_dssp HHHHHHHHTTSS
T ss_pred cccccccccccc
Confidence 999999998863
No 78
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.88 E-value=2.5e-22 Score=193.41 Aligned_cols=229 Identities=21% Similarity=0.221 Sum_probs=172.0
Q ss_pred HcCeEEEeceEE-E--eCCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCCC-----c--eeecchhhhccccC---Cc
Q 008850 204 ALGVDILTGVGT-I--LGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDG-----K--TVITSDHALKLEFV---PD 270 (551)
Q Consensus 204 ~~~v~~~~~~~~-~--~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~~-----~--~v~~~~~~~~~~~~---~k 270 (551)
.-||-+..|... . ...+.|.++||.+|.||.++||||.+|...+.....+ + .+++..++.++++. -+
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~ 348 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQ 348 (659)
T ss_pred cCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcc
Confidence 347888888643 2 3467889999999999999999999998655332211 1 23466677666542 48
Q ss_pred eEEEECCChhHHHHHHHHHhC----CCeEEEEcccCcCCCC-CCHHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEE
Q 008850 271 WIAIVGSGYIGLEFSDVYTAL----GSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVT 342 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~ 342 (551)
+|.|||+|.+|-|+|..|.+. |.+|+-+.....-|.. ++.-++++..+.+++ .||.++.+..+. .....+.
T Consensus 349 siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~-~GV~V~pna~v~sv~~~~~nl~ 427 (659)
T KOG1346|consen 349 SITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRK-GGVDVRPNAKVESVRKCCKNLV 427 (659)
T ss_pred eEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHh-cCceeccchhhhhhhhhccceE
Confidence 999999999999999999864 6788866554444443 445567777777876 899999998877 5556788
Q ss_pred EEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCCCcEEEecCCCCC-----
Q 008850 343 IELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGK----- 417 (551)
Q Consensus 343 v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~----- 417 (551)
+++.|| .++..|+|++|+|-.||+++.....+.+...-|.+.||..++. ..|||++||++..
T Consensus 428 lkL~dG------~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-------r~NvwvAGdaacF~D~~L 494 (659)
T KOG1346|consen 428 LKLSDG------SELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-------RENVWVAGDAACFEDGVL 494 (659)
T ss_pred EEecCC------CeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-------ccceeeecchhhhhcccc
Confidence 999988 7899999999999999999774333333336678999999884 5799999998622
Q ss_pred --C--CcHHHHHHHHHHHHHHHcCCCccCCCCC
Q 008850 418 --M--MLAHAASAQGISVVEQVTGRDHVLNHLS 446 (551)
Q Consensus 418 --~--~~~~~A~~~g~~aa~~i~g~~~~~~~~~ 446 (551)
- ..+..|.-.||.|++||.|-..++.+..
T Consensus 495 GrRRVehhdhavvSGRLAGENMtgAakpy~hqs 527 (659)
T KOG1346|consen 495 GRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQS 527 (659)
T ss_pred cceeccccccceeeceecccccccccCCccccc
Confidence 1 2355688899999999998777665544
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.85 E-value=9.9e-21 Score=194.90 Aligned_cols=282 Identities=20% Similarity=0.216 Sum_probs=184.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|.|||+|||||++|..|.+.|++|+++|+ +..||...+- +|...+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG--IP~~kl------------------------------ 171 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG--IPDFKL------------------------------ 171 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec--Cchhhc------------------------------
Confidence 7999999999999999999999999999999 7788865432 332111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCC-CCCCCCccCCCceeecc
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVITS 259 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~~~ 259 (551)
..++.+.....+++.|++++.+..... .++.++ -.-.||++++|||+. |+..++++.+..+++..
T Consensus 172 ----------~k~i~d~~i~~l~~~Gv~~~~~~~vG~---~it~~~-L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A 237 (457)
T COG0493 172 ----------PKDILDRRLELLERSGVEFKLNVRVGR---DITLEE-LLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFA 237 (457)
T ss_pred ----------cchHHHHHHHHHHHcCeEEEEcceECC---cCCHHH-HHHhhCEEEEeccccCCCCCCCCCcCCCcchHH
Confidence 133444455667778999988764321 222222 123469999999976 66666666665566554
Q ss_pred hhhhc------cc-----c----CCceEEEECCChhHHHHHHHHHhCCC-eEEEEcccCcC--CCCCCHHHHHHHHHHHh
Q 008850 260 DHALK------LE-----F----VPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQL--MPGFDPEIGKLAQRVLI 321 (551)
Q Consensus 260 ~~~~~------~~-----~----~~k~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~--l~~~~~~~~~~~~~~l~ 321 (551)
.+++. +. . .+|+|+|||+|.++++++....+.|. +|+.+.+...- ...+..-......+...
T Consensus 238 ~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (457)
T COG0493 238 LDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAG 317 (457)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhh
Confidence 44321 11 1 23899999999999999999999986 77877522211 11111111222222222
Q ss_pred CCCceEEEeceEEE-----eCCCcEEEEEec---cc------------CCCCCeEEecCEEEEeecCCCCCCCCCCcccc
Q 008850 322 NPRKIDYHTGVFAT-----KDGKPVTIELID---AK------------TKEPKDTLEVDAALIATGRAPFTNGLGLENIN 381 (551)
Q Consensus 322 ~~~gi~~~~~~~~~-----~~~~~~~v~~~~---g~------------~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~ 381 (551)
+ .|+......... .+++...+.+.. +. ..++...+++|.|+.++|+.++.........+
T Consensus 318 e-eg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~ 396 (457)
T COG0493 318 E-EGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFG 396 (457)
T ss_pred h-cCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccc
Confidence 2 455544443222 223333332211 10 01334578999999999999876543222224
Q ss_pred ccc-CCCceeeCCCC-ccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 382 VVT-QRGFVPVDERM-RVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 382 l~~-~~G~i~Vd~~~-~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
+.. ..|.|.+|+.+ + |+.|++||.||+..+..+...|+.+|+.+|+.|-
T Consensus 397 ~~~~~~g~i~~~~~~~~------ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 397 LKLDKRGRIKVDENLQQ------TSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred cccCCCCceeccccccc------ccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence 444 78999999998 6 8999999999999887899999999999998774
No 80
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.84 E-value=2e-20 Score=175.61 Aligned_cols=185 Identities=19% Similarity=0.239 Sum_probs=105.5
Q ss_pred EEECCChHHHHHHHHHHHcCCc-EEEeeC-CccCcccccCCc-----cCChhhHhhH-HHHHHHHhhhhhhhcCcccccc
Q 008850 105 IIIGAGVGGHGAALHAVEKGLK-TAIIEG-DVVGGTCVNRGC-----VPSKALLAVS-GRMRELQSEHHMKALGLQVHAA 176 (551)
Q Consensus 105 vIIGgG~AGl~aA~~l~~~g~~-V~liE~-~~~GG~~~~~g~-----~p~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~ 176 (551)
+||||||+||++|..|.+.|.+ ++|||+ +.+||.|..... .|........ ..+..+.. ..... +.....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF-DDSPE--WRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH-HHHHH--HHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc-ccCCC--CCCCcc
Confidence 7999999999999999999999 999999 699999985321 1211100000 00000000 00000 000011
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-----EeCCcEEEeCcceEEEeCeEEEeCCC--CCCCCCCc
Q 008850 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-----ILGPQKVKFGTDNIVTAKDIIIATGS--VPFVPKGI 249 (551)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~v~~~~g~~i~~d~lVlAtG~--~p~~p~~~ 249 (551)
..... ++.+++....++.++++..++.. ..+.+.|++.+++++.+|+||+|||. .|+.|+++
T Consensus 78 ~~~~~-----------~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 78 FPSGE-----------EVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp SEBHH-----------HHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-T
T ss_pred cCCHH-----------HHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccc
Confidence 12333 34444555555667776665422 22458899988878999999999995 68888766
Q ss_pred c-CCCceeecchhhhc-cccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcC
Q 008850 250 E-VDGKTVITSDHALK-LEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (551)
Q Consensus 250 ~-~~~~~v~~~~~~~~-~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 304 (551)
+ .+. ..+++.++.. ....+|+|+|||+|.+|+++|..|.+.|.+|+++.|++..
T Consensus 147 g~~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 147 GSAFR-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp TGGCS-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred ccccc-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 6 444 4444444433 3456899999999999999999999999999999998753
No 81
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.83 E-value=2e-19 Score=195.70 Aligned_cols=285 Identities=15% Similarity=0.112 Sum_probs=164.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHH-HHHh-hhhhhhcCcccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMR-ELQS-EHHMKALGLQVHAA 176 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~ 176 (551)
...+|+|||||||||+||..|++.|++|+|+|+ ...|+..... -|-+.+........ .... ...+..+|++
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~--~~i~~~~~~~~~L~er~p~~~GG~~~yGIp---- 455 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVH--KPIKFWHEYKNLLSERMPRGFGGVAEYGIT---- 455 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccc--cccchhhhhccchhhhccccCCcccccCcc----
Confidence 457999999999999999999999999999998 4333321100 01111100000000 0000 1112233333
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH-HcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCC-CCCCCCCccCCCc
Q 008850 177 GYDRQGVADHANNLATKIRNNLTNSMK-ALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS-VPFVPKGIEVDGK 254 (551)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~-~p~~p~~~~~~~~ 254 (551)
+.+. +...+ .+...++ ..+++++.|.... ..++.++-....||+|+||||+ .|+.+++++.+..
T Consensus 456 -~R~~------k~~l~----~i~~il~~g~~v~~~~gv~lG---~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~ 521 (1028)
T PRK06567 456 -VRWD------KNNLD----ILRLILERNNNFKYYDGVALD---FNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAK 521 (1028)
T ss_pred -ccch------HHHHH----HHHHHHhcCCceEEECCeEEC---ccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCC
Confidence 1111 01111 1111122 1346666564311 1222222234679999999999 6998888888777
Q ss_pred eeecchhhhccc--------------cCCceEEEECCChhHHHHHHHHHh------------------------------
Q 008850 255 TVITSDHALKLE--------------FVPDWIAIVGSGYIGLEFSDVYTA------------------------------ 290 (551)
Q Consensus 255 ~v~~~~~~~~~~--------------~~~k~v~VvG~G~~g~e~A~~l~~------------------------------ 290 (551)
++++..+++... ..+++|+|||||++|+|+|.....
T Consensus 522 GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~ 601 (1028)
T PRK06567 522 GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFI 601 (1028)
T ss_pred CeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHH
Confidence 888777654221 135799999999999999983322
Q ss_pred ---------------------CCCeEEEEcccCc-CCCCCCHHHHHHHHHHHhCCCceEEEeceEEE---e--CCCcEEE
Q 008850 291 ---------------------LGSEVTFIEALDQ-LMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT---K--DGKPVTI 343 (551)
Q Consensus 291 ---------------------~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~---~--~~~~~~v 343 (551)
.| .|+++.|+.. -||.... ..+.+.+.++ .||.++.+.... . ++....+
T Consensus 602 ~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~~~-~~eEv~~A~e--EGV~f~~~~~P~~i~~d~~g~v~~l 677 (1028)
T PRK06567 602 AHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPAYKL-NHEELIYALA--LGVDFKENMQPLRINVDKYGHVESV 677 (1028)
T ss_pred HHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCCCCC-CHHHHHHHHH--cCcEEEecCCcEEEEecCCCeEEEE
Confidence 22 2888887753 2343210 1133445554 589998876544 2 2334444
Q ss_pred EEec---------ccCC---------------CCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCcccc
Q 008850 344 ELID---------AKTK---------------EPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVID 399 (551)
Q Consensus 344 ~~~~---------g~~~---------------~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~ 399 (551)
++.. +... ++...++||.||+|+|..||+..... . ..+-
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~-------~-------~s~~--- 740 (1028)
T PRK06567 678 EFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED-------K-------YSYF--- 740 (1028)
T ss_pred EEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc-------c-------cccc---
Confidence 4432 1101 13467999999999999999875310 0 0111
Q ss_pred CCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 400 ANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 400 ~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
++.+++|+- +...|+.+|+.++.+|.
T Consensus 741 ---~d~~~~f~G--------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 741 ---GDCNPKYSG--------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ---cCCCCcccc--------HHHHHHHHHHhHHHHHH
Confidence 455666663 67889999999999983
No 82
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.8e-19 Score=187.46 Aligned_cols=192 Identities=21% Similarity=0.229 Sum_probs=124.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCc-EEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccc
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLK-TAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~-V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (551)
...++||+|||||++||++|.+|+++|.+ ++|+|| +.+||+|.+. +.|+-.+..... ...+..+.++...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~-ry~~l~~~~p~~-------~~~~~~~p~~~~~ 76 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN-RYPGLRLDSPKW-------LLGFPFLPFRWDE 76 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc-cCCceEECCchh-------eeccCCCccCCcc
Confidence 34568999999999999999999999998 999999 7999998752 222111100000 0011111111011
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece--EEEe---CCcEEEeCcceE--EEeCeEEEeCCC--CCCCC
Q 008850 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGV--GTIL---GPQKVKFGTDNI--VTAKDIIIATGS--VPFVP 246 (551)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~---~~~~v~~~~g~~--i~~d~lVlAtG~--~p~~p 246 (551)
....+..+..|+....+++.. ...+.+.... +... ..++|+++++.+ +.+|+||+|||. .|++|
T Consensus 77 ~~~~~~~~~~y~~~~~~~y~~-------~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP 149 (443)
T COG2072 77 AFAPFAEIKDYIKDYLEKYGL-------RFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIP 149 (443)
T ss_pred cCCCcccHHHHHHHHHHHcCc-------eeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCC
Confidence 112222234443333333221 1122222221 1111 246788777654 569999999994 47777
Q ss_pred CCcc---CCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcC
Q 008850 247 KGIE---VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (551)
Q Consensus 247 ~~~~---~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 304 (551)
.+.+ +.+..+|++++....+..+|+|+|||+|.+|++++..|.+.|.+||++.|++..
T Consensus 150 ~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 150 DFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 6554 556667777777777888999999999999999999999999999999998753
No 83
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=8.1e-19 Score=179.81 Aligned_cols=300 Identities=16% Similarity=0.151 Sum_probs=171.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHH-----HhhhhhhhcCcccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMREL-----QSEHHMKALGLQVH 174 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~ 174 (551)
..+|+|||||+|||.+|+.|.+.|++++++|| +.+||.|.+..... ...+..++++ .....+.++.++..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~----~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~ 81 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE----VVHSSVYKSLRTNLPKEMMGYSDFPFPER 81 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc----ccccchhhhhhccCChhhhcCCCCCCccc
Confidence 46999999999999999999999999999999 89999999763222 0000111111 11123333444333
Q ss_pred -ccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEe--CCcEEEeCcc----eEEEeCeEEEeCCCC--CC
Q 008850 175 -AAG-YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL--GPQKVKFGTD----NIVTAKDIIIATGSV--PF 244 (551)
Q Consensus 175 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~v~~~~g----~~i~~d~lVlAtG~~--p~ 244 (551)
... .+..++.+|++.+++++.....-. .++++. ++... +.|.|.+.+. .+..+|.||+|||-. |+
T Consensus 82 ~~~~~p~~~e~~~YL~~yA~~F~l~~~i~---f~~~v~--~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~ 156 (448)
T KOG1399|consen 82 DPRYFPSHREVLEYLRDYAKHFDLLKMIN---FNTEVV--RVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPR 156 (448)
T ss_pred CcccCCCHHHHHHHHHHHHHhcChhhheE---ecccEE--EEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCC
Confidence 222 355678888887777664211111 111110 11112 3567766432 477899999999976 77
Q ss_pred CCCCc-----cCCCceeecchhhhccccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHH
Q 008850 245 VPKGI-----EVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRV 319 (551)
Q Consensus 245 ~p~~~-----~~~~~~v~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~ 319 (551)
+|.++ .+.|..+|++++-..-.+.+|+|+|||.|++|+|++..+++...+|++..+ ..... ......
T Consensus 157 ~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~-------~~~~~~ 228 (448)
T KOG1399|consen 157 IPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVH-------VEPPEI 228 (448)
T ss_pred CCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-ccccc-------ccccce
Confidence 77543 345655666655545556789999999999999999999999888888865 10000 000000
Q ss_pred HhCCCceEEEeceEEE-eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCC-cc
Q 008850 320 LINPRKIDYHTGVFAT-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERM-RV 397 (551)
Q Consensus 320 l~~~~gi~~~~~~~~~-~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~-~~ 397 (551)
+ ..++..+.. +. ..++.. +.+.++ ....+|.+|+|||+.-...+++-.. + +.++++. ..
T Consensus 229 ~--~~~~~~~~~--i~~~~e~~~-~~~~~~------~~~~~D~ii~ctgy~y~fPfl~~~~-------~-~~~~~~~~~p 289 (448)
T KOG1399|consen 229 L--GENLWQVPS--IKSFTEDGS-VFEKGG------PVERVDRIIFCTGYKYKFPFLETLG-------L-GTVRDNIVGP 289 (448)
T ss_pred e--ecceEEccc--cccccCcce-EEEcCc------eeEEeeeEEEeeeeEeecceeccCC-------c-eeeccCcccc
Confidence 0 022332222 21 112221 222232 5678999999999987776653111 1 2222221 10
Q ss_pred ccCCCCCCCcEEEecCC-CCCC---CcHHHHHHHHHHHHHHHcCC
Q 008850 398 IDANGNLVPHLYCIGDA-NGKM---MLAHAASAQGISVVEQVTGR 438 (551)
Q Consensus 398 ~~~~~t~~~~IyA~GD~-~~~~---~~~~~A~~~g~~aa~~i~g~ 438 (551)
.. ..-.|..++-|.. .+.+ ...+....|++.+++-+.|+
T Consensus 290 l~--k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~ 332 (448)
T KOG1399|consen 290 LY--KKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGR 332 (448)
T ss_pred hh--eeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCC
Confidence 00 0223344444422 1111 12445567888888888776
No 84
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.80 E-value=1.1e-18 Score=163.46 Aligned_cols=298 Identities=17% Similarity=0.217 Sum_probs=174.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-C-CcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK-G-LKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~-g-~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
.+++|+|||||.+|++.|.++.++ + -+|.|||..+ .|+.+.||..-..+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e-----------------------------~HyYQPgfTLvGgG 88 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE-----------------------------DHYYQPGFTLVGGG 88 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh-----------------------------hcccCcceEEeccc
Confidence 569999999999999999998775 4 4799999732 22333333322111
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE--EeCCcEEEeCcceEEEeCeEEEeCCCCCC---CCCCcc-C
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT--ILGPQKVKFGTDNIVTAKDIIIATGSVPF---VPKGIE-V 251 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~v~~~~g~~i~~d~lVlAtG~~p~---~p~~~~-~ 251 (551)
... +....+..++ +. -.+.+++...+. ..+.++|.+.+|++|+||++|||+|..-+ +++..+ +
T Consensus 89 l~~--l~~srr~~a~-li--------P~~a~wi~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal 157 (446)
T KOG3851|consen 89 LKS--LDSSRRKQAS-LI--------PKGATWIKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEAL 157 (446)
T ss_pred hhh--hhhccCcccc-cc--------cCCcHHHHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhc
Confidence 100 0000000000 00 001111111111 13567888999999999999999997743 333211 2
Q ss_pred CCceee---cchhhh-------ccc-------cCCceEEEECCChhHHHHHHH-HHhCCC--eEEEEc--ccCcCCCCCC
Q 008850 252 DGKTVI---TSDHAL-------KLE-------FVPDWIAIVGSGYIGLEFSDV-YTALGS--EVTFIE--ALDQLMPGFD 309 (551)
Q Consensus 252 ~~~~v~---~~~~~~-------~~~-------~~~k~v~VvG~G~~g~e~A~~-l~~~g~--~Vtlv~--~~~~~l~~~~ 309 (551)
+..++. +....+ +.. +....+-..|+-.-.+-++.. +++.|. ++.++. .-+.++. -
T Consensus 158 ~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg--V 235 (446)
T KOG3851|consen 158 DTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG--V 235 (446)
T ss_pred cCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec--H
Confidence 222232 221111 111 112345556777777888755 555563 344443 3333332 3
Q ss_pred HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcccccccCC
Q 008850 310 PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQR 386 (551)
Q Consensus 310 ~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~~~ 386 (551)
...++.+++..++ ++|++......+ .+++. ..+++-...+..++++++++.+.....+... +.++.+.+..
T Consensus 236 k~Y~~AL~k~~~~-rni~vn~krnLiEV~~~~~~--AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~---l~~s~~adkt 309 (446)
T KOG3851|consen 236 KHYADALEKVIQE-RNITVNYKRNLIEVRTNDRK--AVFENLDKPGVTEEIEYSLLHVTPPMSTPEV---LANSDLADKT 309 (446)
T ss_pred HHHHHHHHHHHHh-cceEeeeccceEEEeccchh--hHHHhcCCCCceeEEeeeeeeccCCCCChhh---hhcCcccCcc
Confidence 4577788888775 889887776554 22222 2233322234557899999999887766443 3566677789
Q ss_pred CceeeCC-CCccccCCCCCCCcEEEecCCCCCCC--cHHHHHHHHHHHHHHHc----CCCccCCCCCcceE
Q 008850 387 GFVPVDE-RMRVIDANGNLVPHLYCIGDANGKMM--LAHAASAQGISVVEQVT----GRDHVLNHLSIPAA 450 (551)
Q Consensus 387 G~i~Vd~-~~~~~~~~~t~~~~IyA~GD~~~~~~--~~~~A~~~g~~aa~~i~----g~~~~~~~~~~p~~ 450 (551)
||+.||. .+|+ +.+||||+||||.+.|. ++..+..|..++-+|+. |+.....|..+.+|
T Consensus 310 GfvdVD~~TlQs-----~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt~~ydGYtSC 375 (446)
T KOG3851|consen 310 GFVDVDQSTLQS-----KKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRPTMKYDGYTSC 375 (446)
T ss_pred cceecChhhhcc-----ccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhcCCCcceeecCcccC
Confidence 9999996 5887 89999999999998875 44445567778888875 55444445555544
No 85
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.79 E-value=1.7e-19 Score=169.10 Aligned_cols=141 Identities=31% Similarity=0.450 Sum_probs=86.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHHH
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 182 (551)
||+|||||+||++||.+|++.+.+++|||+.. +.+....|++...+..........
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 56 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP--GTPYNSGCIPSPLLVEIAPHRHEF---------------------- 56 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS--HHHHHHSHHHHHHHHHHHHHHHHH----------------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc--cccccccccccccccccccccccc----------------------
Confidence 79999999999999999999999999998732 122223333333322221111000
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHcCeEEEe-ceEEEe--CCcE-------E---EeCcceEEEeCeEEEeCCCCCCCCCC
Q 008850 183 VADHANNLATKIR-NNLTNSMKALGVDILT-GVGTIL--GPQK-------V---KFGTDNIVTAKDIIIATGSVPFVPKG 248 (551)
Q Consensus 183 ~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~-~~~~~~--~~~~-------v---~~~~g~~i~~d~lVlAtG~~p~~p~~ 248 (551)
.... ..+.+.+...++++.. ..+..+ .... + ...++.++.||+||||||+.|..|++
T Consensus 57 ---------~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i 127 (201)
T PF07992_consen 57 ---------LPARLFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI 127 (201)
T ss_dssp ---------HHHHHGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS
T ss_pred ---------ccccccccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeec
Confidence 0000 0222333446777733 333222 2221 1 23456789999999999999887765
Q ss_pred ccCC----CceeecchhhhccccCCceEEEEC
Q 008850 249 IEVD----GKTVITSDHALKLEFVPDWIAIVG 276 (551)
Q Consensus 249 ~~~~----~~~v~~~~~~~~~~~~~k~v~VvG 276 (551)
++.+ ...+.++..+......+++++|||
T Consensus 128 ~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 128 PGEEVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp TTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred CCCccccccccccccccccccccccccccccc
Confidence 5542 234667777777766677999999
No 86
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.79 E-value=1.8e-18 Score=183.37 Aligned_cols=284 Identities=21% Similarity=0.259 Sum_probs=169.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
...+|.|||+|||||+||-+|-+.|+.|+|+|| +++||...+ |++.. ..
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y----------------------------gipnm--kl 1833 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY----------------------------GIPNM--KL 1833 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee----------------------------cCCcc--ch
Confidence 347999999999999999999999999999999 889986542 22210 01
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCC-CCCCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~ 257 (551)
| +.+.+.-.+.+...||+++.++. ++. .+.++ +-.-.+|++|+|+|+. |+-.|+++-+.++++
T Consensus 1834 d------------k~vv~rrv~ll~~egi~f~tn~e--igk-~vs~d-~l~~~~daiv~a~gst~prdlpv~grd~kgv~ 1897 (2142)
T KOG0399|consen 1834 D------------KFVVQRRVDLLEQEGIRFVTNTE--IGK-HVSLD-ELKKENDAIVLATGSTTPRDLPVPGRDLKGVH 1897 (2142)
T ss_pred h------------HHHHHHHHHHHHhhCceEEeecc--ccc-cccHH-HHhhccCeEEEEeCCCCCcCCCCCCccccccH
Confidence 1 11222233456678999987752 222 23332 2334699999999987 776666665555443
Q ss_pred cchhh---------------hccccCCceEEEECCChhHHHHHHHHHhCCCe-EEEEcccCc---------CCCCCCH--
Q 008850 258 TSDHA---------------LKLEFVPDWIAIVGSGYIGLEFSDVYTALGSE-VTFIEALDQ---------LMPGFDP-- 310 (551)
Q Consensus 258 ~~~~~---------------~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~---------~l~~~~~-- 310 (551)
-.-.+ ..+...+|+|+|||||.+|-++...-.+.|++ |.-++--+. .+|.++.
T Consensus 1898 fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvf 1977 (2142)
T KOG0399|consen 1898 FAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVF 1977 (2142)
T ss_pred HHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEE
Confidence 21111 11223579999999999999988777777754 333332111 1222111
Q ss_pred --HH-HHHHHHHHhC-CCceEEEeceEEE-eCCCc-----EEEEEeccc--------CCCCCeEEecCEEEEeecCCCCC
Q 008850 311 --EI-GKLAQRVLIN-PRKIDYHTGVFAT-KDGKP-----VTIELIDAK--------TKEPKDTLEVDAALIATGRAPFT 372 (551)
Q Consensus 311 --~~-~~~~~~~l~~-~~gi~~~~~~~~~-~~~~~-----~~v~~~~g~--------~~~~~~~i~~D~vi~a~G~~p~~ 372 (551)
++ .+.+++..-+ .+-..+.+..-+. .++.. +.|+.+... ..+.++.+++|+|+++.|+....
T Consensus 1978 rvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe 2057 (2142)
T KOG0399|consen 1978 RVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPE 2057 (2142)
T ss_pred EeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcc
Confidence 11 1112222211 0011111111111 11111 112221110 12345689999999999987544
Q ss_pred CCCCCccccccc-CCCceeeC-CCCccccCCCCCCCcEEEecCCCCCCCcHHHHHHHHHHHHHHHc
Q 008850 373 NGLGLENINVVT-QRGFVPVD-ERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 373 ~~l~l~~~~l~~-~~G~i~Vd-~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 436 (551)
... .+..+++. .++.|..- +... |++++|||+|||..+-.+..+|+++||.+|+.+-
T Consensus 2058 ~~~-~~~~~~~~d~rsni~t~~~~y~------t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2058 KSV-IEQLNLKTDPRSNILTPKDSYS------TDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVD 2116 (2142)
T ss_pred hhh-hhhcCcccCccccccCCCcccc------ccccceeecccccCCceEEEEEehhhhHHHHHHH
Confidence 322 25555655 55555543 3344 8999999999999887899999999999998763
No 87
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=152.35 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=118.3
Q ss_pred CCcEEEeCcceEEEeCeEEEeCCCCCCCCCCc-cCCCceeecchhhhccc---cCCceEEEECCChhHHHHHHHHHhCCC
Q 008850 218 GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGI-EVDGKTVITSDHALKLE---FVPDWIAIVGSGYIGLEFSDVYTALGS 293 (551)
Q Consensus 218 ~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~-~~~~~~v~~~~~~~~~~---~~~k~v~VvG~G~~g~e~A~~l~~~g~ 293 (551)
..+.+.+.+|.++.|++|++|||++|...-.. +..-..+.+.+....++ ...|.|+|+|.|-+++|++.++. +.
T Consensus 79 ~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~ 156 (334)
T KOG2755|consen 79 SEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--IL 156 (334)
T ss_pred ccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--cc
Confidence 35678888999999999999999999754321 11111222333333332 34799999999999999999997 56
Q ss_pred eEEEEcccCcCCCC-CCHHHHHHHHHHHhC---C--------CceEEEeceE-----------------EE---------
Q 008850 294 EVTFIEALDQLMPG-FDPEIGKLAQRVLIN---P--------RKIDYHTGVF-----------------AT--------- 335 (551)
Q Consensus 294 ~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~---~--------~gi~~~~~~~-----------------~~--------- 335 (551)
+|+|....+.+... ||+...+.+...+.. . +.++.+.+.. ..
T Consensus 157 nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~ 236 (334)
T KOG2755|consen 157 NVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRS 236 (334)
T ss_pred eeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhh
Confidence 79998877776554 566666655544411 0 0111111100 00
Q ss_pred ------------eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008850 336 ------------KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 402 (551)
Q Consensus 336 ------------~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~l~~-~~G~i~Vd~~~~~~~~~~ 402 (551)
...+...++-.+.. ++....+.||.+++++|..||++..- .+ .+.. ++|.+.||+.|+
T Consensus 237 l~~l~~~~~~~~d~~d~~sv~~~~~e-k~~~~qlt~d~ivSatgvtpn~e~~~-~~-~lq~~edggikvdd~m~------ 307 (334)
T KOG2755|consen 237 LTYLRNCVITSTDTSDNLSVHYMDKE-KMADNQLTCDFIVSATGVTPNSEWAM-NK-MLQITEDGGIKVDDAME------ 307 (334)
T ss_pred hHHhhhheeeeccchhhccccccccc-ccccceeeeeEEEeccccCcCceEEe-cC-hhhhccccCeeehhhcc------
Confidence 00000011111110 11123677999999999999998442 22 2333 788899999999
Q ss_pred CCCCcEEEecCCCC
Q 008850 403 NLVPHLYCIGDANG 416 (551)
Q Consensus 403 t~~~~IyA~GD~~~ 416 (551)
|+.|++||+||++.
T Consensus 308 tslpdvFa~gDvct 321 (334)
T KOG2755|consen 308 TSLPDVFAAGDVCT 321 (334)
T ss_pred ccccceeeecceec
Confidence 89999999999975
No 88
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.75 E-value=2.6e-18 Score=172.46 Aligned_cols=256 Identities=25% Similarity=0.301 Sum_probs=129.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcC-CcEEEeeC-Ccc---CcccccCCc---c-CChhhHhhHHHHHHHHhhhhhhhcCc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVV---GGTCVNRGC---V-PSKALLAVSGRMRELQSEHHMKALGL 171 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g-~~V~liE~-~~~---GG~~~~~g~---~-p~~~~~~~~~~~~~~~~~~~~~~~g~ 171 (551)
.+|+|+||.||++|+.|+.|.+.+ .++..+|+ +.. -|..+ .+. + +-+.+.........+....+++.-|.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll-~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLL-PGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG---SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCC-CCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 489999999999999999999986 89999998 431 11111 110 0 00111000000000000000110010
Q ss_pred c-----ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece-EEEe----C----CcEEEe----CcceEEEeC
Q 008850 172 Q-----VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL----G----PQKVKF----GTDNIVTAK 233 (551)
Q Consensus 172 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~----~----~~~v~~----~~g~~i~~d 233 (551)
. .....+.+.++.+|+.+.++++ .-.+..+. +..+ + .+.|.+ +++.++.++
T Consensus 81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~-----------~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar 149 (341)
T PF13434_consen 81 LYEFYNRGYFFPSRREFNDYLRWVAEQL-----------DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR 149 (341)
T ss_dssp HHHHHHH--SS-BHHHHHHHHHHHHCCG-----------TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES
T ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHhC-----------CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC
Confidence 0 0112244555555555555443 22133332 2211 1 256766 346789999
Q ss_pred eEEEeCCCCCCCCCCcc-CCC-ceeecchhhh-cc--ccCCceEEEECCChhHHHHHHHHHhCCC--eEEEEcccCcCCC
Q 008850 234 DIIIATGSVPFVPKGIE-VDG-KTVITSDHAL-KL--EFVPDWIAIVGSGYIGLEFSDVYTALGS--EVTFIEALDQLMP 306 (551)
Q Consensus 234 ~lVlAtG~~p~~p~~~~-~~~-~~v~~~~~~~-~~--~~~~k~v~VvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~l~ 306 (551)
+||||||..|.+|.... ..+ ..++++.++. .. ...+++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+
T Consensus 150 ~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~ 229 (341)
T PF13434_consen 150 NVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFP 229 (341)
T ss_dssp EEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB
T ss_pred eEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCC
Confidence 99999999999997544 332 5565555444 33 3457999999999999999999998864 8999999887654
Q ss_pred C---------CCHHHHHH-----------HH-------------------------HHHhCCCceEEEeceEEE---eCC
Q 008850 307 G---------FDPEIGKL-----------AQ-------------------------RVLINPRKIDYHTGVFAT---KDG 338 (551)
Q Consensus 307 ~---------~~~~~~~~-----------~~-------------------------~~l~~~~gi~~~~~~~~~---~~~ 338 (551)
. |+|+..+. +. +.+..+..+.++.++.+. .++
T Consensus 230 ~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~ 309 (341)
T PF13434_consen 230 MDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG 309 (341)
T ss_dssp ----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES
T ss_pred CccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC
Confidence 2 23332111 11 111112457888888877 333
Q ss_pred -CcEEEEEecccCCCCCeEEecCEEEEeecCC
Q 008850 339 -KPVTIELIDAKTKEPKDTLEVDAALIATGRA 369 (551)
Q Consensus 339 -~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 369 (551)
+.+.+++.+...+ +..++++|.||+|||++
T Consensus 310 ~~~~~l~~~~~~~~-~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 310 DGGVRLTLRHRQTG-EEETLEVDAVILATGYR 340 (341)
T ss_dssp -SSEEEEEEETTT---EEEEEESEEEE---EE
T ss_pred CCEEEEEEEECCCC-CeEEEecCEEEEcCCcc
Confidence 4788888875433 44688999999999985
No 89
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=1.1e-16 Score=156.11 Aligned_cols=332 Identities=19% Similarity=0.211 Sum_probs=192.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcC-CcEEEeeC-Ccc---CcccccCCc---cC-ChhhHhhHHHHHHHHhhhhhhh
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVV---GGTCVNRGC---VP-SKALLAVSGRMRELQSEHHMKA 168 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g-~~V~liE~-~~~---GG~~~~~g~---~p-~~~~~~~~~~~~~~~~~~~~~~ 168 (551)
++..+|++.||-||+-|+.|+.|.+.+ ++.+.+|| +.+ .|..+ .++ +| -+.++.....-..+....++..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmll-egstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLL-EGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCccc-CCccccccchhhhccccCCCCchHHHHHHHH
Confidence 345689999999999999999999875 78999998 431 23222 111 11 1111111100000000011111
Q ss_pred cC----c-cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCC---cEEEeCcceEEEeCeEEEeCC
Q 008850 169 LG----L-QVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP---QKVKFGTDNIVTAKDIIIATG 240 (551)
Q Consensus 169 ~g----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~v~~~~g~~i~~d~lVlAtG 240 (551)
-+ + ......+.+.+..+|+.+.+..+ ..++ .|-++..-.....+. ..+.+.++.+++++.|||++|
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~r-----fg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G 154 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLR-----FGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVG 154 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhC-Cccc-----cCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccC
Confidence 11 0 01122356777777777777665 2221 122221100000011 124555667899999999999
Q ss_pred CCCCCCC-CccCCCceeecchhhh-ccccC-Cc-eEEEECCChhHHHHHHHHHhC----CCeEEEEcccCcCCCC-----
Q 008850 241 SVPFVPK-GIEVDGKTVITSDHAL-KLEFV-PD-WIAIVGSGYIGLEFSDVYTAL----GSEVTFIEALDQLMPG----- 307 (551)
Q Consensus 241 ~~p~~p~-~~~~~~~~v~~~~~~~-~~~~~-~k-~v~VvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~l~~----- 307 (551)
..|++|+ ...+.+..++++.++. ...+. .+ +|+|||+|.+|.|+-..|... ..++.|+.|+..++|.
T Consensus 155 ~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf 234 (436)
T COG3486 155 TQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKF 234 (436)
T ss_pred CCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchh
Confidence 9999997 4556665565554444 43332 34 499999999999999988764 3568999999887763
Q ss_pred ----CCHHHHHHH------------------------------HH-----HHh-CCCceEEEeceEEE---eCCCc-EEE
Q 008850 308 ----FDPEIGKLA------------------------------QR-----VLI-NPRKIDYHTGVFAT---KDGKP-VTI 343 (551)
Q Consensus 308 ----~~~~~~~~~------------------------------~~-----~l~-~~~gi~~~~~~~~~---~~~~~-~~v 343 (551)
|.|+..++. .+ .+. .+..|.++.++.+. ..++. +.+
T Consensus 235 ~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l 314 (436)
T COG3486 235 GLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRL 314 (436)
T ss_pred hhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEE
Confidence 333332221 00 010 02467788887776 23333 677
Q ss_pred EEecccCCCCCeEEecCEEEEeecCCCCCC-CCCCcccccc-cCCCceeeCCCCccccCCCCCCCcEEEecCCC-----C
Q 008850 344 ELIDAKTKEPKDTLEVDAALIATGRAPFTN-GLGLENINVV-TQRGFVPVDERMRVIDANGNLVPHLYCIGDAN-----G 416 (551)
Q Consensus 344 ~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~-~l~l~~~~l~-~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~-----~ 416 (551)
.+.+..+++ .++++.|.||+|||++.... ++..-.--+. .++|...|+++.++.. .+...-.||+.|-+. +
T Consensus 315 ~~~~~~~~~-~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~-~~~~~~~ifvqn~e~htHGig 392 (436)
T COG3486 315 TLRHHETGE-LETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLW-DGPGKGRIFVQNAELHTHGIG 392 (436)
T ss_pred EEeeccCCC-ceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeec-CCCCcceEEEecccccccccC
Confidence 776654433 46889999999999985554 4421111223 3788899998877531 112234799999775 3
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCC
Q 008850 417 KMMLAHAASAQGISVVEQVTGRD 439 (551)
Q Consensus 417 ~~~~~~~A~~~g~~aa~~i~g~~ 439 (551)
.|.+.-.|.+.+. .++.|+|..
T Consensus 393 ~pdLsl~a~Raa~-I~~~L~g~~ 414 (436)
T COG3486 393 APDLSLGAWRAAV-ILNSLLGRE 414 (436)
T ss_pred CccchHHHHHHHH-HHHHHhCcC
Confidence 3556666666554 456667654
No 90
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.70 E-value=1e-15 Score=151.31 Aligned_cols=198 Identities=20% Similarity=0.239 Sum_probs=128.6
Q ss_pred EEEeCeEEEeCCCCCCCCCCccCCCc----eeecchhhhccc----------------cCCceEEEE---CCCh------
Q 008850 229 IVTAKDIIIATGSVPFVPKGIEVDGK----TVITSDHALKLE----------------FVPDWIAIV---GSGY------ 279 (551)
Q Consensus 229 ~i~~d~lVlAtG~~p~~p~~~~~~~~----~v~~~~~~~~~~----------------~~~k~v~Vv---G~G~------ 279 (551)
++....+|+|||-.++-+.-....|. +++|.-++.++. +.||+|+.| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~ 377 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP 377 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence 57889999999988775543332222 345554444332 247888765 6543
Q ss_pred --------hHHHHHHHHHhC--CCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEe
Q 008850 280 --------IGLEFSDVYTAL--GSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELI 346 (551)
Q Consensus 280 --------~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~ 346 (551)
.++-.|..++++ ..+|+++...-+-. .....++..+..++ .||+++.+.... .+++.+.|..+
T Consensus 378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRaf---G~~yEefY~~~Q~~-~gV~fIRGrvaei~e~p~~~l~V~~E 453 (622)
T COG1148 378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAF---GKDYEEFYVRSQED-YGVRFIRGRVAEIAEFPKKKLIVRVE 453 (622)
T ss_pred hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeecc---CccHHHHHHhhhhh-hchhhhcCChHHheeCCCCeeEEEEE
Confidence 133344444444 46788887654433 33344444454444 899999886544 34445677777
Q ss_pred cccCCCCCeEEecCEEEEeecCCCCCCCCCC-ccccccc-CCCceeeC-CCCccccCCCCCCCcEEEecCCCCCCCcHHH
Q 008850 347 DAKTKEPKDTLEVDAALIATGRAPFTNGLGL-ENINVVT-QRGFVPVD-ERMRVIDANGNLVPHLYCIGDANGKMMLAHA 423 (551)
Q Consensus 347 ~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l-~~~~l~~-~~G~i~Vd-~~~~~~~~~~t~~~~IyA~GD~~~~~~~~~~ 423 (551)
|...+ ...++++|+|++++|+.|....-.+ ..+|+.. +.||+... +.++..+ |+.+|||.+|-+. +|+-...
T Consensus 454 dTl~g-~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~---s~~~GIflAG~aq-gPkdI~~ 528 (622)
T COG1148 454 DTLTG-EVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVD---SNRDGIFLAGAAQ-GPKDIAD 528 (622)
T ss_pred eccCc-cceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCccccc---ccCCcEEEeeccc-CCccHHH
Confidence 76444 4468999999999999986542111 2345555 78988876 6788777 8999999999554 5688888
Q ss_pred HHHHHHHHHHHH
Q 008850 424 ASAQGISVVEQV 435 (551)
Q Consensus 424 A~~~g~~aa~~i 435 (551)
++.||..||...
T Consensus 529 siaqa~aAA~kA 540 (622)
T COG1148 529 SIAQAKAAAAKA 540 (622)
T ss_pred HHHHhHHHHHHH
Confidence 888888776543
No 91
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.66 E-value=1.2e-14 Score=149.32 Aligned_cols=160 Identities=21% Similarity=0.197 Sum_probs=112.7
Q ss_pred EEEECCChhHHHHH-HHHH----hCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEE
Q 008850 272 IAIVGSGYIGLEFS-DVYT----ALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTI 343 (551)
Q Consensus 272 v~VvG~G~~g~e~A-~~l~----~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v 343 (551)
=+|++.+.+|+|.+ ..+. +.|.+|+++...+..++.+ ++.+.+.+.+++ .|++++.+..+. .+++.+..
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~-~Gv~I~~g~~V~~v~~~~~~V~~ 294 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFER-LGGRIMPGDEVLGAEFEGGRVTA 294 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHh-CCCEEEeCCEEEEEEEeCCEEEE
Confidence 37889999999999 6665 4699999999998888754 678888888876 899999998887 23333332
Q ss_pred EEecccCCCCCeEEecCEEEEeecCCCCCCC-------------CCCccc-------------ccccCCCceeeCCCCcc
Q 008850 344 ELIDAKTKEPKDTLEVDAALIATGRAPFTNG-------------LGLENI-------------NVVTQRGFVPVDERMRV 397 (551)
Q Consensus 344 ~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~-------------l~l~~~-------------~l~~~~G~i~Vd~~~~~ 397 (551)
.... ++....+++|.+++|+|+.+...+ |.+... +-....-.|.||+.+|.
T Consensus 295 v~~~---~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p 371 (422)
T PRK05329 295 VWTR---NHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRP 371 (422)
T ss_pred EEee---CCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCc
Confidence 2221 122357899999999998765432 111000 00111123788988887
Q ss_pred ccCC-CCCCCcEEEecCCCCCCCcH------HHHHHHHHHHHHHHcC
Q 008850 398 IDAN-GNLVPHLYCIGDANGKMMLA------HAASAQGISVVEQVTG 437 (551)
Q Consensus 398 ~~~~-~t~~~~IyA~GD~~~~~~~~------~~A~~~g~~aa~~i~g 437 (551)
.+.. ++.++||||+|++.+++..+ -+|+..|..|+++|+.
T Consensus 372 ~~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 372 LDSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred ccCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 5443 37799999999999886543 4788999999999874
No 92
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.64 E-value=6e-14 Score=143.82 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=85.8
Q ss_pred ccEEEECCChHHHHHHHHHH-HcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 102 YDLIIIGAGVGGHGAALHAV-EKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~-~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
.+|+||||||||++||.+|. +.|++|+|+|+ +.+||.+.+ +..|.+. .
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~-GVaPdh~-----------------------------~ 89 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY-GVAPDHI-----------------------------H 89 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE-eCCCCCc-----------------------------c
Confidence 58999999999999999865 67999999999 788887652 2222110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCCCCC------------
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPK------------ 247 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~------------ 247 (551)
.+.+...+...+...+++++-+ +.. + ..++.++- .-.||+||+|+|+.+..++
T Consensus 90 -----------~k~v~~~f~~~~~~~~v~f~gn-v~V-G-~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~G 154 (506)
T PTZ00188 90 -----------VKNTYKTFDPVFLSPNYRFFGN-VHV-G-VDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSG 154 (506)
T ss_pred -----------HHHHHHHHHHHHhhCCeEEEee-eEe-c-CccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeecc
Confidence 0222223333344467777632 111 1 12222222 2379999999999865444
Q ss_pred CccCC--Cceeecchhhh-------------ccc------cCCceEEEECCChhHHHHHHHHH
Q 008850 248 GIEVD--GKTVITSDHAL-------------KLE------FVPDWIAIVGSGYIGLEFSDVYT 289 (551)
Q Consensus 248 ~~~~~--~~~v~~~~~~~-------------~~~------~~~k~v~VvG~G~~g~e~A~~l~ 289 (551)
+.... -.++++..++. ... ...++++|||+|++|+++|..|.
T Consensus 155 Ge~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~ 217 (506)
T PTZ00188 155 GETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILI 217 (506)
T ss_pred ccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHc
Confidence 22110 11333332221 110 02378999999999999998753
No 93
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.62 E-value=2.7e-15 Score=125.69 Aligned_cols=85 Identities=32% Similarity=0.460 Sum_probs=78.6
Q ss_pred cceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccchhhhhcCCCceEEEEEEeCCCCCCcceeeeeCCChhHH
Q 008850 447 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNL 526 (551)
Q Consensus 447 ~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~~lg~~~~g~~~~~~ 526 (551)
+|+++|++|++++||+||+||+++ |+++++.++++..+.++...++++||+||++|++ +++|||+|++|+++.++
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~----g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~-t~~IlGa~~vg~~a~e~ 75 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQ----GIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKK-TGRILGAQIVGPNASEL 75 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHH----TSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETT-TTBEEEEEEEETTHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhc----cCceeeeeecccccchhcccCCcceeeEEEEEee-ccceeeeeeecCchHHH
Confidence 689999999999999999999986 8999999999999999999999999999999997 89999999999999999
Q ss_pred HHHHHHHhhh
Q 008850 527 VKKLADVYMT 536 (551)
Q Consensus 527 i~~l~~~~~~ 536 (551)
|+.++.+...
T Consensus 76 I~~~~~ai~~ 85 (110)
T PF02852_consen 76 INELALAIQN 85 (110)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999876544
No 94
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.57 E-value=2.3e-13 Score=131.08 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=92.0
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (551)
++|+|||+||||+.+|..|.++ +++|.|+|+ +.++|.. .+|..|.+...
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv-RyGVAPDHpEv--------------------------- 72 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV-RYGVAPDHPEV--------------------------- 72 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee-eeccCCCCcch---------------------------
Confidence 4899999999999999999884 689999999 6666643 33444432211
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCC-CCCCCCccCCCceee
Q 008850 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (551)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~-p~~p~~~~~~~~~v~ 257 (551)
+.....+...+++....++-+... ...+.+.+ -+-.||+||||.|+. ++..++++.+..+|+
T Consensus 73 -------------KnvintFt~~aE~~rfsf~gNv~v---G~dvsl~e-L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~ 135 (468)
T KOG1800|consen 73 -------------KNVINTFTKTAEHERFSFFGNVKV---GRDVSLKE-LTDNYDAVVLAYGADGDRRLDIPGEELSGVI 135 (468)
T ss_pred -------------hhHHHHHHHHhhccceEEEeccee---cccccHHH-HhhcccEEEEEecCCCCcccCCCCcccccce
Confidence 111112222333344444433211 01222221 234699999999987 667777776666777
Q ss_pred cchhhhcc------------ccCCceEEEECCChhHHHHHHHHH
Q 008850 258 TSDHALKL------------EFVPDWIAIVGSGYIGLEFSDVYT 289 (551)
Q Consensus 258 ~~~~~~~~------------~~~~k~v~VvG~G~~g~e~A~~l~ 289 (551)
+.+.+..+ +....+|+|||.|++++++|..|.
T Consensus 136 Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 136 SAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred ehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhh
Confidence 77655433 223679999999999999998875
No 95
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.52 E-value=5.1e-12 Score=127.29 Aligned_cols=328 Identities=18% Similarity=0.205 Sum_probs=180.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcC---CcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHH-H-----hhhhhhhcC-
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKG---LKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMREL-Q-----SEHHMKALG- 170 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g---~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~-~-----~~~~~~~~g- 170 (551)
++|+|||+|++|+.+|.+|.+.- ..+.|||+ ..+|+-..+..-.|.+.+.-.+..+... + ...|+...+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999862 23999999 7777665555444433322222211111 1 113333331
Q ss_pred -------cccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEe------CCcEEEeCcceEEEeCeEE
Q 008850 171 -------LQVHAAGY-DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL------GPQKVKFGTDNIVTAKDII 236 (551)
Q Consensus 171 -------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~v~~~~g~~i~~d~lV 236 (551)
+..+...| .+.-+-+|+.+....+... .....+.++....... ....+...+|....+|-+|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~----~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~V 157 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLAR----GRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIV 157 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHh----cCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEE
Confidence 11122222 3444455554443333221 1111355555544321 2345667788889999999
Q ss_pred EeCCCCCCCCCC--ccCCCc--ee---ecchhhhccccCCceEEEECCChhHHHHHHHHHhCC--CeEEEEcccCcCCCC
Q 008850 237 IATGSVPFVPKG--IEVDGK--TV---ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLMPG 307 (551)
Q Consensus 237 lAtG~~p~~p~~--~~~~~~--~v---~~~~~~~~~~~~~k~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~ 307 (551)
+|||..+..++. ..+.+. .+ +..+..... ....+|+|+|+|.+-++....|.+.| .+||++.|+. +++.
T Consensus 158 latgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v-~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~ 235 (474)
T COG4529 158 LATGHSAPPADPAARDLKGSPRLIADPYPANALDGV-DADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPR 235 (474)
T ss_pred EeccCCCCCcchhhhccCCCcceeccccCCcccccc-cCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-cccC
Confidence 999976443332 122222 11 122222222 23456999999999999999999987 4689998875 3221
Q ss_pred ------CC-----------------HHHHHHHHHHHhC------------------------------------------
Q 008850 308 ------FD-----------------PEIGKLAQRVLIN------------------------------------------ 322 (551)
Q Consensus 308 ------~~-----------------~~~~~~~~~~l~~------------------------------------------ 322 (551)
.. ..++..+++.-++
T Consensus 236 ~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr 315 (474)
T COG4529 236 PHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHR 315 (474)
T ss_pred CCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHH
Confidence 00 1111111111000
Q ss_pred ----------------CCceEEEeceEEE--eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCC-----C-CCc
Q 008850 323 ----------------PRKIDYHTGVFAT--KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNG-----L-GLE 378 (551)
Q Consensus 323 ----------------~~gi~~~~~~~~~--~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~-----l-~l~ 378 (551)
+.-++++.+..+. ..+....+.+..-. ....+.+++|.||-|+|..+.... | .+.
T Consensus 316 ~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg-~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~ 394 (474)
T COG4529 316 FRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERG-KQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLG 394 (474)
T ss_pred hhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccc-cCccceeeeeEEEEcCCcCcCCCccchHHHHHHH
Confidence 1122444444332 22222333332211 122357899999999997664431 1 112
Q ss_pred cccccc---CCCceeeCCCCccccCCCCCCCcEEEecCCCCCC----CcHHHHHHHHHHHHHHHc
Q 008850 379 NINVVT---QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKM----MLAHAASAQGISVVEQVT 436 (551)
Q Consensus 379 ~~~l~~---~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~----~~~~~A~~~g~~aa~~i~ 436 (551)
+.|+.. ...+|.|+++.++....|+..+++|++|-.+.+. .....-..|+..+|..++
T Consensus 395 ~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 395 ENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred hCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 233332 3345899999999887889999999999987542 223344556666666665
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.39 E-value=4.6e-12 Score=124.50 Aligned_cols=142 Identities=25% Similarity=0.376 Sum_probs=93.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-Ccc--------CcccccCCccCC-----------hhhHhhHHHHHH
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV--------GGTCVNRGCVPS-----------KALLAVSGRMRE 159 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~--------GG~~~~~g~~p~-----------~~~~~~~~~~~~ 159 (551)
+.+||+|||||||||.||+.+++.|.+|+|||+ +.+ ||.|+..+..+. +.+......+..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 358999999999999999999999999999998 544 588885443221 112222222222
Q ss_pred HHhhhhhhhcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEE-e--C--CcEEEeCcceEEEeCe
Q 008850 160 LQSEHHMKALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI-L--G--PQKVKFGTDNIVTAKD 234 (551)
Q Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~--~--~~~v~~~~g~~i~~d~ 234 (551)
.....+++.+|+.......-+ +. ....-.+.+.+.+...+++.||+++..+... + + .+.+.+.++.++.+|.
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr--~F-p~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGR--MF-PDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred HHHHHHHHhcCCeeEEccCce--ec-CCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 233456677777643211100 00 0001135666777788889999999887431 1 2 4678888888899999
Q ss_pred EEEeCC--CCCC
Q 008850 235 IIIATG--SVPF 244 (551)
Q Consensus 235 lVlAtG--~~p~ 244 (551)
|||||| |.|.
T Consensus 159 lilAtGG~S~P~ 170 (408)
T COG2081 159 LILATGGKSWPK 170 (408)
T ss_pred EEEecCCcCCCC
Confidence 999999 5553
No 97
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.35 E-value=6.9e-12 Score=126.00 Aligned_cols=312 Identities=19% Similarity=0.284 Sum_probs=163.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCc---ccccCC---ccC---ChhhH--h---------hHHHHH----
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGG---TCVNRG---CVP---SKALL--A---------VSGRMR---- 158 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG---~~~~~g---~~p---~~~~~--~---------~~~~~~---- 158 (551)
||+|||+|.|||++|+.|.+. ++|+|+.|..++. .|..-| ++. +.... + -....+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999988 9999999966552 111111 011 10000 0 000011
Q ss_pred -HHHhhhhhhhcCccccccc-----------cCHHHHHHHHHHHHHHHHHHHHHHHHH-cCeEEEeceEE---EeCCc--
Q 008850 159 -ELQSEHHMKALGLQVHAAG-----------YDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGT---ILGPQ-- 220 (551)
Q Consensus 159 -~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~---~~~~~-- 220 (551)
......++..+|++++... ...+.+..-.......+...+....++ .+|+++++... ..+..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 1122356777888765332 122222222223345566666666654 79999998532 11222
Q ss_pred --EEEeC-c---ceEEEeCeEEEeCCCCCCCC----CCccCCCceee-------cchhhhccccCCceEEEECCChhHHH
Q 008850 221 --KVKFG-T---DNIVTAKDIIIATGSVPFVP----KGIEVDGKTVI-------TSDHALKLEFVPDWIAIVGSGYIGLE 283 (551)
Q Consensus 221 --~v~~~-~---g~~i~~d~lVlAtG~~p~~p----~~~~~~~~~v~-------~~~~~~~~~~~~k~v~VvG~G~~g~e 283 (551)
.+.+. . -..+.++.+|||||..-.+. +.....|.++- ...++.-.++.| ..+-.+ +--..-
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHP-T~l~~~-~~~~~L 245 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHP-TALYIP-QRRAFL 245 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeecc-ceecCC-CCccce
Confidence 12221 1 25688999999999653211 11112222220 111111112222 222222 222233
Q ss_pred HHHHHHhCCCeEEEEcccCcCCCCCCH-------H-HHHHHHHHHhCCCceEEEeceEEEeCCCcEEEEEecccCCCCCe
Q 008850 284 FSDVYTALGSEVTFIEALDQLMPGFDP-------E-IGKLAQRVLINPRKIDYHTGVFATKDGKPVTIELIDAKTKEPKD 355 (551)
Q Consensus 284 ~A~~l~~~g~~Vtlv~~~~~~l~~~~~-------~-~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 355 (551)
+...++-.|. +.+-..+++||+.+++ + ++..+...+++ .|-.++++.... .+.. ++ +
T Consensus 246 iSEAVRGEGA-~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~-~g~~V~LD~s~~-~~~~--~~----------~ 310 (518)
T COG0029 246 ISEAVRGEGA-ILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKR-GGADVFLDISHI-PGDF--FE----------R 310 (518)
T ss_pred eehhhhcCcc-EEECCCCCccccCCCCccccchHHHHHHHHHHHHHh-cCCeEEEeccCC-Cchh--hh----------h
Confidence 4455555553 4444567889876533 2 34455555554 344344443221 1100 00 1
Q ss_pred EEe-cCEEEEeecCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCCCCcEEEecCCC-----CCCCcHHHHHHH--
Q 008850 356 TLE-VDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDAN-----GKMMLAHAASAQ-- 427 (551)
Q Consensus 356 ~i~-~D~vi~a~G~~p~~~~l~l~~~~l~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~-----~~~~~~~~A~~~-- 427 (551)
.++ ....+...|..|..+.+.+. .....-.|.|.||.+.| |++|++||+|.|+ |..+++.++..+
T Consensus 311 rFP~I~~~c~~~GiD~~r~~IPV~-PaaHY~mGGI~vD~~Gr------Tsi~gLYAiGEvA~TGlHGANRLASNSLLE~v 383 (518)
T COG0029 311 RFPTIYAACLKAGIDPTREPIPVV-PAAHYTMGGIAVDANGR------TSIPGLYAIGEVACTGLHGANRLASNSLLECL 383 (518)
T ss_pred hCcHHHHHHHHcCCCcccCccCcc-chhheecccEEECCCCc------ccCcccEEeeeecccccccchhhhhhhHHHHH
Confidence 111 12334455777766544321 12344778899999999 8999999999996 335677776665
Q ss_pred --HHHHHHHHcCCC
Q 008850 428 --GISVVEQVTGRD 439 (551)
Q Consensus 428 --g~~aa~~i~g~~ 439 (551)
|..+|+.|.+..
T Consensus 384 V~g~~aA~~i~~~~ 397 (518)
T COG0029 384 VFGKRAAEDIAGRL 397 (518)
T ss_pred HHHHHHHHHhhccc
Confidence 555666777653
No 98
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.32 E-value=1.9e-11 Score=95.87 Aligned_cols=77 Identities=39% Similarity=0.755 Sum_probs=68.8
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEec
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELID 347 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~ 347 (551)
+++|||+|++|+|+|..|++.|.+||++++++.+++.++++..+.+.+.+++ .||+++++..+. .+++.+.|+++|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~~~V~~~~ 79 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRK-RGVEVHTNTKVKEIEKDGDGVEVTLED 79 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHH-TTEEEEESEEEEEEEEETTSEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHH-CCCEEEeCCEEEEEEEeCCEEEEEEec
Confidence 6899999999999999999999999999999999999999999999999987 899999999887 344435577776
Q ss_pred c
Q 008850 348 A 348 (551)
Q Consensus 348 g 348 (551)
|
T Consensus 80 g 80 (80)
T PF00070_consen 80 G 80 (80)
T ss_dssp S
T ss_pred C
Confidence 4
No 99
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.22 E-value=1.1e-09 Score=119.15 Aligned_cols=35 Identities=46% Similarity=0.668 Sum_probs=32.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHc--CCcEEEeeCCc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDV 134 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~~~ 134 (551)
.++||||||+|.|||+||+.+++. |.+|+||||..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 358999999999999999999998 99999999943
No 100
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=1.3e-10 Score=125.99 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=43.2
Q ss_pred ccCCCceeeCCCCccccCCCCCCCcEEEecCCCC-C-C-------CcHHHHHHHHHHHHHHHcC
Q 008850 383 VTQRGFVPVDERMRVIDANGNLVPHLYCIGDANG-K-M-------MLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 383 ~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~-~-~-------~~~~~A~~~g~~aa~~i~g 437 (551)
....|.|.||.+.|+.+..+|++||+||+|+|++ . . .....++-.|++|+++++.
T Consensus 348 h~t~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 411 (575)
T PRK05945 348 HYCMGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAE 411 (575)
T ss_pred eecCCCeeECCCceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 3467889999999987777789999999999974 2 1 2345677789999998874
No 101
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.21 E-value=9e-11 Score=120.50 Aligned_cols=135 Identities=27% Similarity=0.409 Sum_probs=73.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-Ccc--------CcccccCC-ccCCh-----------hhHhhHHHHHHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV--------GGTCVNRG-CVPSK-----------ALLAVSGRMREL 160 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~--------GG~~~~~g-~~p~~-----------~~~~~~~~~~~~ 160 (551)
|||+|||||||||.||+.|++.|++|+|+|| +.+ +|.|+... ..... .+......+..-
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999 554 37888444 22211 111111222222
Q ss_pred HhhhhhhhcCcccccc--c--cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee---C-C-cEEEeCcceEE
Q 008850 161 QSEHHMKALGLQVHAA--G--YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---G-P-QKVKFGTDNIV 230 (551)
Q Consensus 161 ~~~~~~~~~g~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~-~-~~v~~~~g~~i 230 (551)
....++...|++.... . |... .....+...+...+++.||+++.++.. .+ + . +.|.+.++.++
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s-------~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~ 153 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKS-------DKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEY 153 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT---------HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCC-------CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccc
Confidence 2345777788764321 1 1111 113455666677788899999988643 22 2 2 45777566899
Q ss_pred EeCeEEEeCCCCC
Q 008850 231 TAKDIIIATGSVP 243 (551)
Q Consensus 231 ~~d~lVlAtG~~p 243 (551)
.+|+||||||+..
T Consensus 154 ~a~~vILAtGG~S 166 (409)
T PF03486_consen 154 EADAVILATGGKS 166 (409)
T ss_dssp EESEEEE----SS
T ss_pred cCCEEEEecCCCC
Confidence 9999999999764
No 102
>PRK09897 hypothetical protein; Provisional
Probab=99.20 E-value=6.6e-10 Score=117.63 Aligned_cols=182 Identities=19% Similarity=0.145 Sum_probs=99.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CcEEEeeC-CccCcccccCCccCChhhHhhH---------HHHHHH---Hhhhhh
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGGTCVNRGCVPSKALLAVS---------GRMREL---QSEHHM 166 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g--~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~---------~~~~~~---~~~~~~ 166 (551)
++|+||||||+|+++|.+|.+.+ ++|+|||+ ..+|.-+.+...-|++.++... ..+... ....++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999998864 58999999 6677433333222222222110 000000 000112
Q ss_pred hhcCccc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHcC--eEEEec-eEEEe----CCcEEEeCc-ceEEEeCe
Q 008850 167 KALGLQV----HAAGYDRQGVADHANNLATKIRNNLTNSMKALG--VDILTG-VGTIL----GPQKVKFGT-DNIVTAKD 234 (551)
Q Consensus 167 ~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~----~~~~v~~~~-g~~i~~d~ 234 (551)
..++... ....+.+..+.+|+.+..+.+ ...+...| ++++.+ .++.+ +...+.+++ +..+.+|+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l----~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~ 157 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRL----VDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDL 157 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHH----HHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCE
Confidence 2223321 111233444555655544433 23344555 666655 44333 223455544 46789999
Q ss_pred EEEeCCCCC-CCCCCccCCCceeecchh-hhcc-ccCCceEEEECCChhHHHHHHHHHhC
Q 008850 235 IIIATGSVP-FVPKGIEVDGKTVITSDH-ALKL-EFVPDWIAIVGSGYIGLEFSDVYTAL 291 (551)
Q Consensus 235 lVlAtG~~p-~~p~~~~~~~~~v~~~~~-~~~~-~~~~k~v~VvG~G~~g~e~A~~l~~~ 291 (551)
||+|||..+ ..+... ..++...+ .... ...+.+|+|+|.|.++++++..|...
T Consensus 158 VVLAtGh~~p~~~~~~----~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 158 AVIATGHVWPDEEEAT----RTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EEECCCCCCCCCChhh----ccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 999999753 222111 11221111 1111 11258999999999999999998865
No 103
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.20 E-value=1.8e-10 Score=121.74 Aligned_cols=142 Identities=21% Similarity=0.317 Sum_probs=80.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCc-ccccCCccC-----C----hhhHhh---------HHHHH----
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGG-TCVNRGCVP-----S----KALLAV---------SGRMR---- 158 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG-~~~~~g~~p-----~----~~~~~~---------~~~~~---- 158 (551)
+||||||+|.|||+||+.+++.|.+|+||||...++ ++...+.++ . ..+.+. ...++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 699999999999999999999999999999943322 222122111 0 000000 00011
Q ss_pred -HHHhhhhhhhcCcccccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEe--CCcE---EEeCcce
Q 008850 159 -ELQSEHHMKALGLQVHAA----GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL--GPQK---VKFGTDN 228 (551)
Q Consensus 159 -~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~---v~~~~g~ 228 (551)
......|+..+|+++... ...+..+..........+...+...+++.+++++.+.+... +... +.. ++.
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g~ 160 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DGE 160 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CCE
Confidence 112235667777765321 11111110001112234555566667778999887755432 2222 223 456
Q ss_pred EEEeCeEEEeCCCCCC
Q 008850 229 IVTAKDIIIATGSVPF 244 (551)
Q Consensus 229 ~i~~d~lVlAtG~~p~ 244 (551)
.+.++.||||||+...
T Consensus 161 ~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 161 LLKFDATVIATGGFSG 176 (466)
T ss_pred EEEeCeEEECCCcCcC
Confidence 7899999999998754
No 104
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.17 E-value=4.1e-10 Score=119.83 Aligned_cols=38 Identities=29% Similarity=0.579 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTC 139 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~ 139 (551)
++||||||+|.|||+||+.+++.|. |+||||. ..||..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s 40 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS 40 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence 3699999999999999999999997 9999994 445443
No 105
>PRK08275 putative oxidoreductase; Provisional
Probab=99.17 E-value=8.8e-10 Score=119.04 Aligned_cols=45 Identities=27% Similarity=0.228 Sum_probs=36.2
Q ss_pred CCceeeCCCCccccCCCCCCCcEEEecCCCCC-CCcHHHHHHHHHHHHHHHc
Q 008850 386 RGFVPVDERMRVIDANGNLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVT 436 (551)
Q Consensus 386 ~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~ 436 (551)
.|+|.||++++ |++||+||+|||+.. ......+.-.|+.|+.+++
T Consensus 356 ~Ggi~~d~~~~------t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 356 ASGVWVNEKAE------TTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred cCcEEECCCCc------cCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 46799999999 899999999999743 3445567788888888775
No 106
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=6.8e-10 Score=120.46 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=42.2
Q ss_pred cCCCceeeCCCCccccCCCCCCCcEEEecCCCC-C----CC----cHHHHHHHHHHHHHHHcC
Q 008850 384 TQRGFVPVDERMRVIDANGNLVPHLYCIGDANG-K----MM----LAHAASAQGISVVEQVTG 437 (551)
Q Consensus 384 ~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~-~----~~----~~~~A~~~g~~aa~~i~g 437 (551)
...|.|.+|.+.|+.+..+|++||+||+|+|++ . .. ....++-.|++|+++++.
T Consensus 354 ~t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 416 (583)
T PRK08205 354 YAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAE 416 (583)
T ss_pred EECCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence 367889999999988777899999999999964 2 11 344567788899988864
No 107
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=1.4e-09 Score=118.10 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=40.2
Q ss_pred cCCCceeeCCCCccccCCCCCCCcEEEecCCCC-C-C-------CcHHHHHHHHHHHHHHHcC
Q 008850 384 TQRGFVPVDERMRVIDANGNLVPHLYCIGDANG-K-M-------MLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 384 ~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~-~-~-------~~~~~A~~~g~~aa~~i~g 437 (551)
...|.|.||.+.|+.+..|+.+||+||+|+|++ . . .....++-.|++|+++++.
T Consensus 350 ~t~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~ 412 (577)
T PRK06069 350 YTMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAE 412 (577)
T ss_pred eeCCCceECCCCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 467889999999965555555999999999974 2 1 1234567788888888763
No 108
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.15 E-value=6.8e-10 Score=120.23 Aligned_cols=40 Identities=43% Similarity=0.513 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHc--CCcEEEeeC-CccCccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTC 139 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~-~~~GG~~ 139 (551)
.++||||||+|.|||+||+.+++. |.+|+|||| ...||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 358999999999999999999987 479999999 4445443
No 109
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.15 E-value=1.2e-09 Score=124.14 Aligned_cols=66 Identities=26% Similarity=0.215 Sum_probs=46.3
Q ss_pred ecCCCCCCCCCCcc--ccc--ccCCCceeeCCCCccccCCCCCCCcEEEecCCCCC-CCcHHHHHHHHHHHHHHHcC
Q 008850 366 TGRAPFTNGLGLEN--INV--VTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 366 ~G~~p~~~~l~l~~--~~l--~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~g 437 (551)
.|..|..+.+.+.. ... ....|+|.||.+++ |++||+||+|||+.. .+....+.-.|+.|+.++..
T Consensus 337 ~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~------T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 337 RGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHAR------TTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cCCCcccccceecccccccccCCCcceEEecCCCc------ccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHH
Confidence 47777776554211 111 12457899999999 899999999999754 34555678888888888763
No 110
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.15 E-value=4.8e-10 Score=120.95 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=73.2
Q ss_pred cccCCceEEEECCChhHHHHHHH-------HHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE--
Q 008850 265 LEFVPDWIAIVGSGYIGLEFSDV-------YTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT-- 335 (551)
Q Consensus 265 ~~~~~k~v~VvG~G~~g~e~A~~-------l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~-- 335 (551)
+...|+.++++|++.+++|++.. +.+.+.+|++....+.....+...+...+.+.+++ .||++++++.+.
T Consensus 156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~-~gv~v~~~t~v~~l 234 (557)
T PRK07843 156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQR-AGVPVLLNTPLTDL 234 (557)
T ss_pred cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHc-CCCEEEeCCEEEEE
Confidence 34567889999999999998865 67778888877665555455667777788888876 899999998877
Q ss_pred -e-CCCcEEEEEecccCCCCCeEEecC-EEEEeec-CCCCCC
Q 008850 336 -K-DGKPVTIELIDAKTKEPKDTLEVD-AALIATG-RAPFTN 373 (551)
Q Consensus 336 -~-~~~~~~v~~~~g~~~~~~~~i~~D-~vi~a~G-~~p~~~ 373 (551)
. +++.+.+.... +++...+.++ .||+|+| +.+|.+
T Consensus 235 ~~~~g~v~Gv~~~~---~g~~~~i~A~~~VIlAtGG~~~n~~ 273 (557)
T PRK07843 235 YVEDGRVTGVHAAE---SGEPQLIRARRGVILASGGFEHNEQ 273 (557)
T ss_pred EEeCCEEEEEEEEe---CCcEEEEEeceeEEEccCCcCcCHH
Confidence 3 33344455432 1223567885 6888775 555543
No 111
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.14 E-value=4.3e-10 Score=121.99 Aligned_cols=110 Identities=17% Similarity=0.238 Sum_probs=77.6
Q ss_pred chhhhccccCCceEEEECCCh--hHHHHHHHHHhCCCeEEEEcccCcCCCCCC--------------HHHHHHHHHHHhC
Q 008850 259 SDHALKLEFVPDWIAIVGSGY--IGLEFSDVYTALGSEVTFIEALDQLMPGFD--------------PEIGKLAQRVLIN 322 (551)
Q Consensus 259 ~~~~~~~~~~~k~v~VvG~G~--~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~--------------~~~~~~~~~~l~~ 322 (551)
.+++.++...++++.|+|++. ++.|++..+...+.+++++.+...+++.++ .++.+.+.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~ 226 (574)
T PRK12842 147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD 226 (574)
T ss_pred hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence 455666667789999999998 899999999999999888776665554332 3455556666665
Q ss_pred CCceEEEeceEEE----eCCCcEEEEEecccCCCCCeEEecC-EEEEeecCCCCC
Q 008850 323 PRKIDYHTGVFAT----KDGKPVTIELIDAKTKEPKDTLEVD-AALIATGRAPFT 372 (551)
Q Consensus 323 ~~gi~~~~~~~~~----~~~~~~~v~~~~g~~~~~~~~i~~D-~vi~a~G~~p~~ 372 (551)
.|++++.++.++ .++....|...+. +....+.++ .||+|+|.-++.
T Consensus 227 -~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~---~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 227 -LGIPILTGTPARELLTEGGRVVGARVIDA---GGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred -CCCEEEeCCEEEEEEeeCCEEEEEEEEcC---CceEEEEeCCEEEEcCCCccch
Confidence 899999998877 2333344555442 112357776 799999977643
No 112
>PLN02815 L-aspartate oxidase
Probab=99.13 E-value=1.1e-09 Score=118.16 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=34.5
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCc
Q 008850 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGG 137 (551)
Q Consensus 97 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG 137 (551)
....++||||||+|.|||+||+++++.| +|+|||| ...||
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 3445689999999999999999999999 9999999 44455
No 113
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.13 E-value=1.1e-09 Score=119.13 Aligned_cols=38 Identities=34% Similarity=0.482 Sum_probs=33.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGG 137 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG 137 (551)
.++||||||+|.|||+||+++++.|.+|+||||. ..+|
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 4589999999999999999999999999999994 4443
No 114
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.13 E-value=4.2e-09 Score=113.26 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=34.3
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGG 137 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG 137 (551)
..++||||||+|.|||+||+++++.|.+|+|||| ...+|
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 4568999999999999999999999999999999 44443
No 115
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=1.3e-09 Score=117.76 Aligned_cols=38 Identities=29% Similarity=0.515 Sum_probs=33.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGG 137 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG 137 (551)
.++||||||+|.||++||+++++.|.+|+||||. ..+|
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 4589999999999999999999999999999994 4443
No 116
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.11 E-value=1.2e-09 Score=117.29 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=33.3
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~ 138 (551)
...+||||||+|.||++||+++++. .+|+|||| ...||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 3458999999999999999999986 89999999 444553
No 117
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.10 E-value=1e-09 Score=114.82 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGG 137 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG 137 (551)
.++||||||+|.|||+||+.+. .|.+|+|||| ...||
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 4589999999999999999985 6999999999 44444
No 118
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.08 E-value=1.3e-09 Score=118.20 Aligned_cols=244 Identities=16% Similarity=0.234 Sum_probs=133.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCC---ccCChhhHhhHHHHHHHHhh-hhhhhcCccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVPSKALLAVSGRMRELQSE-HHMKALGLQV 173 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g---~~p~~~~~~~~~~~~~~~~~-~~~~~~g~~~ 173 (551)
..++||+|||+|.+|+++|..+++.|++|+|||| ..+||.+...+ |+|.+.+............. .++....
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 86 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHEL--- 86 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHh---
Confidence 4468999999999999999999999999999999 66899887655 67766655433322221111 0011100
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCeEEEeceEEEeCCcEEEeCcceEEEeCeEEEeCCCCCCCCCCccCC
Q 008850 174 HAAGYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD 252 (551)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p~~~~~~ 252 (551)
....+.+.+..+.+...+.+ ++++. .++++..... . ..+.....-.++|.++..|.- ++
T Consensus 87 -~~~~~~~l~~~~~~~s~~~~-----~wl~~~~gv~~~~~~~---------~---~d~~~~~~~~~~ggr~~~~~~--~~ 146 (581)
T PRK06134 87 -GARYDAARIDAFLEAGPHMV-----AFFERHTALRFADGNA---------I---PDYHGDTPGAATGGRSLIAAP--FD 146 (581)
T ss_pred -CcCCCHHHHHHHHhccHHHH-----HHHHhcCCceeeecCC---------C---CCCCCCCCCCCCCCCeeccCC--CC
Confidence 01122222222222222111 23333 3555421100 0 001112223455655444311 11
Q ss_pred CceeecchhhhccccCCceEEEECCChhH-HHHHHHHHhCCCeEEEEcccCcCCCCC--------------CHHHHHHHH
Q 008850 253 GKTVITSDHALKLEFVPDWIAIVGSGYIG-LEFSDVYTALGSEVTFIEALDQLMPGF--------------DPEIGKLAQ 317 (551)
Q Consensus 253 ~~~v~~~~~~~~~~~~~k~v~VvG~G~~g-~e~A~~l~~~g~~Vtlv~~~~~~l~~~--------------~~~~~~~~~ 317 (551)
+... .+++..+...+.++.++|++.++ .+++..+...+..+.+..+..+++..+ ...+...+.
T Consensus 147 g~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~ 224 (581)
T PRK06134 147 GREL--GALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLL 224 (581)
T ss_pred hhhh--hHHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHH
Confidence 1101 13444555566788889988776 788888777776665554433322211 233455666
Q ss_pred HHHhCCCceEEEeceEEE----eCCCcEEEEEecccCCCCCeEEec-CEEEEeecCCCC
Q 008850 318 RVLINPRKIDYHTGVFAT----KDGKPVTIELIDAKTKEPKDTLEV-DAALIATGRAPF 371 (551)
Q Consensus 318 ~~l~~~~gi~~~~~~~~~----~~~~~~~v~~~~g~~~~~~~~i~~-D~vi~a~G~~p~ 371 (551)
+..++ .|++++.++.++ .+++.+.|...+. +....+.+ +.||+|+|--.+
T Consensus 225 ~~a~~-~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~---~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 225 KSAED-LGVRIWESAPARELLREDGRVAGAVVETP---GGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHh-CCCEEEcCCEEEEEEEeCCEEEEEEEEEC---CcEEEEEeCCEEEEcCCCccc
Confidence 66666 899999998877 2333334544321 12236788 999999986543
No 119
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.08 E-value=2.7e-09 Score=110.65 Aligned_cols=134 Identities=23% Similarity=0.339 Sum_probs=75.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHH----HH-HHHhhhh-h--hhcC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGR----MR-ELQSEHH-M--KALG 170 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~----~~-~~~~~~~-~--~~~g 170 (551)
++|||+||||||||++||+.|++.|++|+|+|| +.+|......+-+....+...... +. .+..... + ....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 459999999999999999999999999999999 666653332111111111000000 00 0000000 0 0000
Q ss_pred cccc---ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEE----eCCc-EEEe-CcceEEEeCeEEEeCCC
Q 008850 171 LQVH---AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI----LGPQ-KVKF-GTDNIVTAKDIIIATGS 241 (551)
Q Consensus 171 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~-~v~~-~~g~~i~~d~lVlAtG~ 241 (551)
+... .-.+++ ..+..++....++.|++++.++... .+.. .+.+ .++.+++++.||.|+|.
T Consensus 82 ~~~~~~~~y~v~R-----------~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 82 IEVPVGEGYIVDR-----------AKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred EecCCCceEEEEh-----------HHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 0000 000111 4556667778888999999987542 1212 2222 22368999999999997
Q ss_pred CCC
Q 008850 242 VPF 244 (551)
Q Consensus 242 ~p~ 244 (551)
...
T Consensus 151 ~s~ 153 (396)
T COG0644 151 NSA 153 (396)
T ss_pred chH
Confidence 754
No 120
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.08 E-value=3.4e-09 Score=115.05 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=40.0
Q ss_pred cCCCceeeCCCCccccCCCCCCCcEEEecCCCC-C-C-------CcHHHHHHHHHHHHHHHcC
Q 008850 384 TQRGFVPVDERMRVIDANGNLVPHLYCIGDANG-K-M-------MLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 384 ~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~-~-~-------~~~~~A~~~g~~aa~~i~g 437 (551)
...|.|.||.++|+.+. |++||+||+|+|++ . . .....|+-.|++|+++++.
T Consensus 340 ~t~GGi~id~~~~v~~~--t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~ 400 (566)
T TIGR01812 340 YSMGGIPTDYTGRVICE--TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAE 400 (566)
T ss_pred ccCCCeEECcCcccccC--cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHH
Confidence 46788999999986654 78999999999974 2 1 2345677889999988863
No 121
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.07 E-value=3.9e-09 Score=114.05 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCcEEEeeC-CccCc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGG 137 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~-~~~GG 137 (551)
++||+|||+|.|||.||+.+++. |.+|+|||| ...||
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999987 589999999 44444
No 122
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=1.3e-09 Score=117.53 Aligned_cols=38 Identities=34% Similarity=0.567 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc--cCcc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV--VGGT 138 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~--~GG~ 138 (551)
..+||||||+|.||++||+.+ +.|.+|+||||.. .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 458999999999999999999 8999999999943 3543
No 123
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=1.1e-09 Score=119.64 Aligned_cols=36 Identities=39% Similarity=0.707 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCcc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~ 135 (551)
.++||||||+|.||++||+.+++.|.+|+||||..+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 458999999999999999999999999999999433
No 124
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.06 E-value=1.4e-09 Score=116.77 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTC 139 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~ 139 (551)
..++||||||+|.||++||++++ .|.+|+|||| ...||..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence 34589999999999999999996 4999999999 5555543
No 125
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=3.7e-09 Score=114.71 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=32.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..++||||||+|.|||+||+++++.|.+|+||||.
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 34689999999999999999999999999999994
No 126
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.05 E-value=2e-09 Score=117.23 Aligned_cols=39 Identities=41% Similarity=0.497 Sum_probs=34.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGT 138 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~ 138 (551)
.++||||||+|.|||+||+++++.|.+|+||||. ..+|.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 4689999999999999999999999999999994 44443
No 127
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.05 E-value=1.2e-09 Score=117.81 Aligned_cols=33 Identities=52% Similarity=0.917 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHH----HcCCcEEEeeCCcc
Q 008850 103 DLIIIGAGVGGHGAALHAV----EKGLKTAIIEGDVV 135 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~----~~g~~V~liE~~~~ 135 (551)
||||||+|.|||+||++++ +.|.+|+||||..+
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999543
No 128
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=2.1e-09 Score=116.60 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV 134 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~ 134 (551)
+.||||||+|.|||+||+++++.|.+|+||||..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~ 36 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVP 36 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccC
Confidence 3699999999999999999999999999999943
No 129
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.00 E-value=6.7e-09 Score=110.87 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTC 139 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~ 139 (551)
.+||||||+|.||++||+++++ |.+|+|||| ...||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 4799999999999999999976 899999999 4445544
No 130
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=3.7e-09 Score=114.90 Aligned_cols=34 Identities=44% Similarity=0.649 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.++||||||+|.|||+||+++++.|.+|+||||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~ 44 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKV 44 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 4589999999999999999999999999999994
No 131
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=3.4e-09 Score=115.77 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=33.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG 136 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~G 136 (551)
.++||||||+|.|||+||+++++.|.+|+|||| ..+|
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 468999999999999999999999999999998 4543
No 132
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.96 E-value=4.4e-09 Score=115.14 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..+||||||||.|||.||+++++.|++|+||||.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~ 37 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLV 37 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4689999999999999999999999999999993
No 133
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.94 E-value=8.1e-09 Score=99.89 Aligned_cols=130 Identities=22% Similarity=0.295 Sum_probs=74.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCc-cCChhhHhhHHHHHHHHhhhhhhhcCccccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
.++||+||||||||++||+.|++.|++|+|||+ ..+||.+...+. .+...... ....++..+|+++....
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~--------~~~~~l~~~gv~~~~~~ 95 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQE--------EADEILDEFGIRYKEVE 95 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchH--------HHHHHHHHCCCCceeec
Confidence 358999999999999999999999999999999 566664322121 11111100 11234455665532210
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee---CCcEE---EeC-----------cceEEEeCeEEEeC
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---GPQKV---KFG-----------TDNIVTAKDIIIAT 239 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~~~~v---~~~-----------~g~~i~~d~lVlAt 239 (551)
.....+ ....+...+.....+.|++++.++.. .+ +...+ .+. +..++.++.||+||
T Consensus 96 ~g~~~v------d~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~AT 169 (257)
T PRK04176 96 DGLYVA------DSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDAT 169 (257)
T ss_pred Ccceec------cHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEe
Confidence 000000 01344455666667789999887532 11 11111 111 22468899999999
Q ss_pred CCCC
Q 008850 240 GSVP 243 (551)
Q Consensus 240 G~~p 243 (551)
|...
T Consensus 170 G~~a 173 (257)
T PRK04176 170 GHDA 173 (257)
T ss_pred CCCc
Confidence 9653
No 134
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.93 E-value=1.2e-08 Score=108.18 Aligned_cols=133 Identities=23% Similarity=0.355 Sum_probs=78.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC--ccCcccccCCccCChhhHhhHHHHHHHHhh-----hhhhhcCcc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSE-----HHMKALGLQ 172 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~--~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~-----~~~~~~g~~ 172 (551)
.+|||+|||||+||+.||..+++.|++|+|||+. .+|+ .+|.|+..........+.+... ......++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~----m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq 78 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ----MSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ 78 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc----cCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence 4599999999999999999999999999999984 5664 2555654433222222222110 111111221
Q ss_pred ccc------ccc--CHHHHHHHHHHHHHHHHHHHHHHHHH-cCeEEEeceEEEe--CCc---EEEeCcceEEEeCeEEEe
Q 008850 173 VHA------AGY--DRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTIL--GPQ---KVKFGTDNIVTAKDIIIA 238 (551)
Q Consensus 173 ~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~~---~v~~~~g~~i~~d~lVlA 238 (551)
... +.. .+..+. ...+...+...+.. .+++++.+.+..+ +.. .|.+.+|..+.++.||+|
T Consensus 79 ~r~ln~skGpAV~s~RaQiD------r~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlA 152 (618)
T PRK05192 79 FRMLNTSKGPAVRALRAQAD------RKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLT 152 (618)
T ss_pred eeecccCCCCceeCcHHhcC------HHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEe
Confidence 100 000 000110 12344444445554 4899888876543 222 356677889999999999
Q ss_pred CCCC
Q 008850 239 TGSV 242 (551)
Q Consensus 239 tG~~ 242 (551)
||..
T Consensus 153 TGTF 156 (618)
T PRK05192 153 TGTF 156 (618)
T ss_pred eCcc
Confidence 9964
No 135
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.90 E-value=2e-08 Score=96.76 Aligned_cols=39 Identities=38% Similarity=0.586 Sum_probs=34.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~ 138 (551)
.++||+||||||+|++||+.|++.|++|+|||| ..+||.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg 59 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG 59 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 358999999999999999999999999999999 566543
No 136
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.90 E-value=1.5e-08 Score=110.19 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=29.2
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEeeCCc
Q 008850 104 LIIIGAGVGGHGAALHAVEKGLKTAIIEGDV 134 (551)
Q Consensus 104 VvIIGgG~AGl~aA~~l~~~g~~V~liE~~~ 134 (551)
|||||+|.|||+||+.+++.|.+|+||||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6999999999999999999999999999944
No 137
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.84 E-value=1.3e-07 Score=90.36 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhCCCceEEEeceEEE----eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCC-----------CC
Q 008850 311 EIGKLAQRVLINPRKIDYHTGVFAT----KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN-----------GL 375 (551)
Q Consensus 311 ~~~~~~~~~l~~~~gi~~~~~~~~~----~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~-----------~l 375 (551)
...+.+.+.+++ .|..++.+-.+. ..+....|...++ ....+.+|..++|+|.--... .+
T Consensus 259 Rl~~~L~~~f~~-~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~----~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf 333 (421)
T COG3075 259 RLHNQLQRQFEQ-LGGLWMPGDEVKKATCKGGRVTEIYTRNH----ADIPLRADFYVLASGSFFSKGLVAERDKIYEPIF 333 (421)
T ss_pred hHHHHHHHHHHH-cCceEecCCceeeeeeeCCeEEEEEeccc----ccCCCChhHeeeeccccccccchhhhhhhhcchh
Confidence 455667777876 777788877666 3444445555443 124677899999998421110 11
Q ss_pred CCccccc---------------ccCCCceeeCCCCccccCCCCCCCcEEEecCCCCCCC------cHHHHHHHHHHHHHH
Q 008850 376 GLENINV---------------VTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMM------LAHAASAQGISVVEQ 434 (551)
Q Consensus 376 ~l~~~~l---------------~~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~~------~~~~A~~~g~~aa~~ 434 (551)
+++-... ....-.+.+|+++|.++ +|..++|+||||.+.+++. ..-+|+..|..||+.
T Consensus 334 ~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~-~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~q 412 (421)
T COG3075 334 DLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSR-GGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQ 412 (421)
T ss_pred hcccccCcchhhhhhccccCCChhHHhCcccccccCccc-cchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHH
Confidence 1110000 01111378899999766 4467899999999987743 234577777788887
Q ss_pred HcCC
Q 008850 435 VTGR 438 (551)
Q Consensus 435 i~g~ 438 (551)
|+.+
T Consensus 413 i~~~ 416 (421)
T COG3075 413 IAER 416 (421)
T ss_pred HHHH
Confidence 7643
No 138
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.83 E-value=2.6e-08 Score=103.25 Aligned_cols=141 Identities=18% Similarity=0.272 Sum_probs=77.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcC-ccccccccC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALG-LQVHAAGYD 179 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 179 (551)
+||+||||||||++||..|++.|++|+|+|+ ...+..| .+++|.+.+... +....+... ...... +......++
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c--g~~i~~~~l~~~-g~~~~~~~~-~i~~~~~~~p~~~~~~ 76 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC--GGAIPLCMVDEF-ALPRDIIDR-RVTKMKMISPSNIAVD 76 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc--cccccHhhHhhc-cCchhHHHh-hhceeEEecCCceEEE
Confidence 5899999999999999999999999999999 4545555 345554333221 000010000 000000 000000000
Q ss_pred HHHH---HHHH-HHHHHHHHHHHHHHHHHcCeEEEeceEEEe-------CCcEEEe---------CcceEEEeCeEEEeC
Q 008850 180 RQGV---ADHA-NNLATKIRNNLTNSMKALGVDILTGVGTIL-------GPQKVKF---------GTDNIVTAKDIIIAT 239 (551)
Q Consensus 180 ~~~~---~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~v~~---------~~g~~i~~d~lVlAt 239 (551)
.... ..+. .-....+...+...+.+.|++++.+++... +...|+. +...++++|.||.|+
T Consensus 77 ~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgAD 156 (398)
T TIGR02028 77 IGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGAD 156 (398)
T ss_pred eccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECC
Confidence 0000 0000 001245556667777788999988875432 1123432 122479999999999
Q ss_pred CCCCCCC
Q 008850 240 GSVPFVP 246 (551)
Q Consensus 240 G~~p~~p 246 (551)
|..+.+.
T Consensus 157 G~~S~v~ 163 (398)
T TIGR02028 157 GANSRVA 163 (398)
T ss_pred CcchHHH
Confidence 9876543
No 139
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.83 E-value=3.5e-08 Score=99.36 Aligned_cols=124 Identities=29% Similarity=0.452 Sum_probs=70.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEee-C-CccCcccccCCccCChhhHhhHHHHHHHHhh-----hhhhhcCc----
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIE-G-DVVGGTCVNRGCVPSKALLAVSGRMRELQSE-----HHMKALGL---- 171 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE-~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~-----~~~~~~g~---- 171 (551)
||+|||||+||+.||..+++.|.+|+|+. + +.+| ...|.|+..-.......+.+... ......++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~----~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG----EMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT------SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc----cccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc
Confidence 79999999999999999999999999994 3 4444 34566643222222222222110 01111122
Q ss_pred -------ccccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCeEEEeceEEEe--CC---cEEEeCcceEEEeCeEE
Q 008850 172 -------QVHAA--GYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTIL--GP---QKVKFGTDNIVTAKDII 236 (551)
Q Consensus 172 -------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~---~~v~~~~g~~i~~d~lV 236 (551)
..... .+|+. .+...+.+.++. .+++++.+++..+ +. ..|.+.+|..+.+|.||
T Consensus 77 lN~skGpav~a~r~qvDr~-----------~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vV 145 (392)
T PF01134_consen 77 LNRSKGPAVHALRAQVDRD-----------KYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVV 145 (392)
T ss_dssp ESTTS-GGCTEEEEEE-HH-----------HHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEE
T ss_pred ccccCCCCccchHhhccHH-----------HHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEE
Confidence 11111 23443 344444444544 6899999887754 22 35667888999999999
Q ss_pred EeCCC
Q 008850 237 IATGS 241 (551)
Q Consensus 237 lAtG~ 241 (551)
+|||.
T Consensus 146 laTGt 150 (392)
T PF01134_consen 146 LATGT 150 (392)
T ss_dssp E-TTT
T ss_pred Eeccc
Confidence 99997
No 140
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.83 E-value=4e-08 Score=87.72 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=74.6
Q ss_pred EEECCChHHHHHHHHHHHc-----CCcEEEeeCCccC-c-ccccCCccCChhhHhhHHHHHHH------HhhhhhhhcCc
Q 008850 105 IIIGAGVGGHGAALHAVEK-----GLKTAIIEGDVVG-G-TCVNRGCVPSKALLAVSGRMREL------QSEHHMKALGL 171 (551)
Q Consensus 105 vIIGgG~AGl~aA~~l~~~-----g~~V~liE~~~~G-G-~~~~~g~~p~~~~~~~~~~~~~~------~~~~~~~~~g~ 171 (551)
+|||+|++|++++.+|.+. ..+|+|||+...| | .|... -.+...+...+..+... ....|+..-+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~-~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPD-QPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCC-CChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999987 4689999996655 4 33221 11222221112211111 11123333221
Q ss_pred ----cc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHcC--eEEEeceEEEe----CCcEEEeCcceEEEeCeEEEeCC
Q 008850 172 ----QV-HAAGYDRQGVADHANNLATKIRNNLTNSMKALG--VDILTGVGTIL----GPQKVKFGTDNIVTAKDIIIATG 240 (551)
Q Consensus 172 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~----~~~~v~~~~g~~i~~d~lVlAtG 240 (551)
.. ......+..+.+|+.+..+.+... + ..+ |..+..++..+ +.+.+.+.+|..+.+|+||||||
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~----~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLAR----L-PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHh----h-cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 11 122345556666666555444322 2 234 45555555433 34567788889999999999999
Q ss_pred C
Q 008850 241 S 241 (551)
Q Consensus 241 ~ 241 (551)
.
T Consensus 155 h 155 (156)
T PF13454_consen 155 H 155 (156)
T ss_pred C
Confidence 4
No 141
>PLN02463 lycopene beta cyclase
Probab=98.82 E-value=3.9e-08 Score=102.69 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=75.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCcccccc-
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA- 176 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 176 (551)
....+||+||||||||+++|..|++.|++|+|||+.... .|.+..++-...+. ..+..+.+.. .+ ...-+..+..
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~-~~p~~~g~w~~~l~-~lgl~~~l~~-~w-~~~~v~~~~~~ 100 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS-IWPNNYGVWVDEFE-ALGLLDCLDT-TW-PGAVVYIDDGK 100 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccc-hhccccchHHHHHH-HCCcHHHHHh-hC-CCcEEEEeCCC
Confidence 334589999999999999999999999999999984311 11111111000000 0000000000 00 0000000000
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeC----CcEEEeCcceEEEeCeEEEeCCCCCCC
Q 008850 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFGTDNIVTAKDIIIATGSVPFV 245 (551)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~v~~~~g~~i~~d~lVlAtG~~p~~ 245 (551)
..... ..|..-....+...+.+.+...|++++.+.+..+. ...|.+++|.++.+|.||.|+|..+..
T Consensus 101 ~~~~~--~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 101 KKDLD--RPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred Ccccc--CcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 00000 00000012345555556666779998876654332 245777788889999999999987653
No 142
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.81 E-value=2.8e-06 Score=86.84 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=86.4
Q ss_pred HHHHHHHh-CCCeEEEEcccCcCCCC-CCHHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEE-EEEecccCCCCCeE
Q 008850 283 EFSDVYTA-LGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVT-IELIDAKTKEPKDT 356 (551)
Q Consensus 283 e~A~~l~~-~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~-v~~~~g~~~~~~~~ 356 (551)
++-..|.+ .|..|.-+--.+ |. ....+.+.+.+.+++ .|++++.+..+. .+++.+. +...++ ....
T Consensus 237 ~~~~~L~~~~g~~v~E~ptlP---PSv~G~RL~~aL~~~~~~-~Gg~il~g~~V~~i~~~~~~v~~V~t~~g----~~~~ 308 (419)
T TIGR03378 237 ELLRELEQATGLTLCELPTMP---PSLLGIRLEEALKHRFEQ-LGGVMLPGDRVLRAEFEGNRVTRIHTRNH----RDIP 308 (419)
T ss_pred HHHHHHHHHHCCCEEeCCCCC---CCCcHHHHHHHHHHHHHH-CCCEEEECcEEEEEEeeCCeEEEEEecCC----ccce
Confidence 33344443 366665553322 22 245667778888886 899999887766 3444333 333322 1247
Q ss_pred EecCEEEEeecCC-CCC-----C-----C--CCCcccc---------c----ccCCCceeeCCCCccccCCCCCCCcEEE
Q 008850 357 LEVDAALIATGRA-PFT-----N-----G--LGLENIN---------V----VTQRGFVPVDERMRVIDANGNLVPHLYC 410 (551)
Q Consensus 357 i~~D~vi~a~G~~-p~~-----~-----~--l~l~~~~---------l----~~~~G~i~Vd~~~~~~~~~~t~~~~IyA 410 (551)
+.+|.+|+|+|.- ... + . |++.... + ....-.|.+|+++|... +|..++|+||
T Consensus 309 l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~-~g~~~~Nl~a 387 (419)
T TIGR03378 309 LRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSR-GGQTIENLYA 387 (419)
T ss_pred EECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccC-CCcccccceE
Confidence 9999999999954 210 1 1 1110000 0 00112388999999753 3334999999
Q ss_pred ecCCCCCCC------cHHHHHHHHHHHHHHHc
Q 008850 411 IGDANGKMM------LAHAASAQGISVVEQVT 436 (551)
Q Consensus 411 ~GD~~~~~~------~~~~A~~~g~~aa~~i~ 436 (551)
+|-+.++.. ..-+|+..|-.||++|.
T Consensus 388 ~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 388 IGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred echhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 999976632 24478888999998874
No 143
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.81 E-value=7.1e-08 Score=103.14 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCcc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~ 135 (551)
..++||||||+|.|||+||++++ +.+|+||||...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 34689999999999999999997 579999999544
No 144
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.77 E-value=7.1e-08 Score=100.97 Aligned_cols=37 Identities=38% Similarity=0.568 Sum_probs=33.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG 136 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~G 136 (551)
.+|||+||||||||++||+.|++.|++|+|||| ...|
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 359999999999999999999999999999999 4444
No 145
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.74 E-value=3.8e-08 Score=102.04 Aligned_cols=135 Identities=20% Similarity=0.210 Sum_probs=74.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
||+||||||||+++|..|++.|++|+|||+ +.+|+.+. +++.+ ..+... . ........+...+.+..........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~-~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHT-YGVWD-DDLSDL-G-LADCVEHVWPDVYEYRFPKQPRKLG 76 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCcc-ccccH-hhhhhh-c-hhhHHhhcCCCceEEecCCcchhcC
Confidence 799999999999999999999999999999 55666432 11111 001000 0 0000000010000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeC-----CcEEEeCcceEEEeCeEEEeCCCCC
Q 008850 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-----PQKVKFGTDNIVTAKDIIIATGSVP 243 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~v~~~~g~~i~~d~lVlAtG~~p 243 (551)
..|..-....+...+...+...+++++.+.+..+. ...|.++++.+++++.||.|+|..+
T Consensus 77 --~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 77 --TAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred --CceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00000012345555666666678988877665432 2346666777899999999999876
No 146
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.71 E-value=3.9e-07 Score=97.26 Aligned_cols=37 Identities=35% Similarity=0.610 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-Ccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV 135 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~ 135 (551)
..++||||||||.|||.||+.+++.|.+|+|+|| ...
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 3468999999999999999999999999999999 443
No 147
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.70 E-value=2.3e-07 Score=97.38 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=32.9
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
...++||+||||||||+++|..|++.|++|+|+|+.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERK 71 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 345689999999999999999999999999999983
No 148
>PRK10015 oxidoreductase; Provisional
Probab=98.68 E-value=4.6e-08 Score=102.30 Aligned_cols=34 Identities=41% Similarity=0.621 Sum_probs=32.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.+|||+||||||||++||+.|++.|++|+||||.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~ 37 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERG 37 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4599999999999999999999999999999994
No 149
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.67 E-value=1.5e-07 Score=85.05 Aligned_cols=40 Identities=43% Similarity=0.548 Sum_probs=34.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccC-cccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG-GTCV 140 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~G-G~~~ 140 (551)
..||+||||||+||+||++|++.|++|+|||+ ..+| |.|.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG 71 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence 36999999999999999999999999999999 5554 4443
No 150
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.66 E-value=4.9e-08 Score=96.91 Aligned_cols=32 Identities=38% Similarity=0.781 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
|||+|||||++|+++|+.|++.|.+|+|||+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 69999999999999999999999999999994
No 151
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.66 E-value=4.4e-07 Score=97.82 Aligned_cols=53 Identities=38% Similarity=0.661 Sum_probs=46.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCC---ccCChhhH
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVPSKALL 151 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g---~~p~~~~~ 151 (551)
...++||||||+| +|++||+.+++.|.+|+|||| +.+||+|.+.+ |+|.+.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~ 69 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVL 69 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHH
Confidence 3457999999999 899999999999999999999 78999999888 88876443
No 152
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.66 E-value=2.8e-07 Score=83.97 Aligned_cols=125 Identities=27% Similarity=0.391 Sum_probs=63.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccc-
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG- 177 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 177 (551)
.++||+||||||+||+||..|++.|++|+|||+ ..+||....-+.+-++..... +....+.++|+++....
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~-------~a~~iL~elgi~y~~~~~ 88 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQE-------EADEILDELGIPYEEYGD 88 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEET-------TTHHHHHHHT---EE-SS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhh-------hHHHHHHhCCceeEEeCC
Confidence 358999999999999999999999999999999 566654332222211111110 00122344555532211
Q ss_pred --c--CHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEE----eCCcEEE---eC-----------cceEEEeCeE
Q 008850 178 --Y--DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI----LGPQKVK---FG-----------TDNIVTAKDI 235 (551)
Q Consensus 178 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~v~---~~-----------~g~~i~~d~l 235 (551)
+ +. .++...+....-+.|++++...... .+...|. ++ |-..++++.|
T Consensus 89 g~~v~d~-----------~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~V 157 (230)
T PF01946_consen 89 GYYVADS-----------VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVV 157 (230)
T ss_dssp EEEES-H-----------HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEE
T ss_pred eEEEEcH-----------HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEE
Confidence 1 21 1222333334445899998886432 1212221 11 2347999999
Q ss_pred EEeCCCC
Q 008850 236 IIATGSV 242 (551)
Q Consensus 236 VlAtG~~ 242 (551)
|=|||-.
T Consensus 158 iDaTGHd 164 (230)
T PF01946_consen 158 IDATGHD 164 (230)
T ss_dssp EE---SS
T ss_pred EeCCCCc
Confidence 9999954
No 153
>PRK06847 hypothetical protein; Provisional
Probab=98.64 E-value=1.9e-07 Score=96.27 Aligned_cols=33 Identities=30% Similarity=0.583 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 479999999999999999999999999999983
No 154
>PRK06834 hypothetical protein; Provisional
Probab=98.63 E-value=1.5e-07 Score=100.05 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=75.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc-c--CcccccCCccCChhh--HhhHHHHHHHHhh---hhhhhcCc-
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV-V--GGTCVNRGCVPSKAL--LAVSGRMRELQSE---HHMKALGL- 171 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~-~--GG~~~~~g~~p~~~~--~~~~~~~~~~~~~---~~~~~~g~- 171 (551)
.+||+||||||+|+++|..|++.|++|+|||+.. . .+. ...++....+ +...+..+.+... .....++.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~--Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGS--RAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCc--ceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 4899999999999999999999999999999832 1 111 1112222211 1111111111110 00000110
Q ss_pred cccccccCHHHHHHHHH-HHHHHHHHHHHHHHHHcCeEEEeceEE-E--eC--CcEEEeCcceEEEeCeEEEeCCCCCCC
Q 008850 172 QVHAAGYDRQGVADHAN-NLATKIRNNLTNSMKALGVDILTGVGT-I--LG--PQKVKFGTDNIVTAKDIIIATGSVPFV 245 (551)
Q Consensus 172 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~--~~~v~~~~g~~i~~d~lVlAtG~~p~~ 245 (551)
........... .+.. -....+...+.+.+++.+++++.++.. . .+ ...+++.++.++.+|+||.|.|.++.+
T Consensus 81 ~~~~~~~~~~~--~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 81 RLDISDFPTRH--NYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred ecccccCCCCC--CccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 00000000000 0000 001345555666677789999888643 1 12 234555666789999999999988754
Q ss_pred C
Q 008850 246 P 246 (551)
Q Consensus 246 p 246 (551)
.
T Consensus 159 R 159 (488)
T PRK06834 159 R 159 (488)
T ss_pred H
Confidence 3
No 155
>PLN02697 lycopene epsilon cyclase
Probab=98.62 E-value=1.9e-07 Score=99.04 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=72.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccc-c
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA-A 176 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~ 176 (551)
...+||+||||||||+++|..|++.|++|+|||+ ..+...|. +....+... ...+.+. ..| ....+.... .
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~G----vW~~~l~~l-gl~~~i~-~~w-~~~~v~~~~~~ 178 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYG----VWEDEFKDL-GLEDCIE-HVW-RDTIVYLDDDK 178 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccc----cchhHHHhc-CcHHHHH-hhc-CCcEEEecCCc
Confidence 4469999999999999999999999999999998 33322211 111111000 0000000 000 000000000 0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeC----CcE-EEeCcceEEEeCeEEEeCCCCC
Q 008850 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQK-VKFGTDNIVTAKDIIIATGSVP 243 (551)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~-v~~~~g~~i~~d~lVlAtG~~p 243 (551)
..... ..|..-....+...+...+...|++++...+..+. ... +...++.++.++.||+|+|...
T Consensus 179 ~~~~~--~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 179 PIMIG--RAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred eeecc--CcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 00000 00000011345555556666779998776655432 222 3445677899999999999875
No 156
>PLN02661 Putative thiazole synthesis
Probab=98.61 E-value=3e-07 Score=91.25 Aligned_cols=40 Identities=38% Similarity=0.539 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHc-CCcEEEeeC-CccCc
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG-DVVGG 137 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~-g~~V~liE~-~~~GG 137 (551)
...++||+|||||++|+.||..|++. |++|+|||+ ..+||
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 34568999999999999999999986 899999999 55655
No 157
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.60 E-value=3.2e-07 Score=97.39 Aligned_cols=133 Identities=26% Similarity=0.353 Sum_probs=74.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhh-----hhhhhcCcccc-
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSE-----HHMKALGLQVH- 174 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~-----~~~~~~g~~~~- 174 (551)
|||+|||||+||+.+|..+++.|.+|+|||+. ..+|.| +|.|+..-.......+.+... .....-++.+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~---~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC---SCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRV 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC---CccccccccccchhhhhhhcccchHHHHHHhhceehee
Confidence 69999999999999999999999999999983 444433 344433221111111111100 00000000000
Q ss_pred -----cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHc-CeEEEeceEEEe--C-C---cEEEeCcceEEEeCeEEEeCC
Q 008850 175 -----AAGY--DRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTIL--G-P---QKVKFGTDNIVTAKDIIIATG 240 (551)
Q Consensus 175 -----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--~-~---~~v~~~~g~~i~~d~lVlAtG 240 (551)
.+.. .+..+ -...+...+...+++. +++++.+.+... + . ..|.+.+|..+.+|.||+|||
T Consensus 78 ln~skgpAV~~~RaQV------Dr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATG 151 (617)
T TIGR00136 78 LNSSKGPAVRATRAQI------DKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTG 151 (617)
T ss_pred cccCCCCcccccHHhC------CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccC
Confidence 0000 00000 0123444455555555 889988876543 1 1 246667777899999999999
Q ss_pred CCC
Q 008850 241 SVP 243 (551)
Q Consensus 241 ~~p 243 (551)
...
T Consensus 152 tfL 154 (617)
T TIGR00136 152 TFL 154 (617)
T ss_pred ccc
Confidence 764
No 158
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.59 E-value=6.3e-08 Score=101.29 Aligned_cols=133 Identities=26% Similarity=0.366 Sum_probs=37.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhH----hhHHHHHHHHhhhhhhhcCccccccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALL----AVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
||||||||+||++||+.+++.|++|+|||+ +.+||.....+..+..... ...+....+... ....+-......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~--~~~~~~~~~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR--LRARGGYPQEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS--T-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH--Hhhhcccccccc
Confidence 899999999999999999999999999999 7899987655443222111 111222221110 000000000000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEE---eCC---cEEEeCc---ceEEEeCeEEEeCC
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI---LGP---QKVKFGT---DNIVTAKDIIIATG 240 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~---~~v~~~~---g~~i~~d~lVlAtG 240 (551)
..+..- ..-..+.+...+.+.+.+.|++++.++... .+. ..|.+.+ ..++.++.+|-|||
T Consensus 79 ~~~~~~---~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 79 YGWVSN---VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000 000012233344555566789988886431 122 2333332 46799999999999
No 159
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.59 E-value=1.7e-07 Score=97.11 Aligned_cols=32 Identities=34% Similarity=0.609 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
|||+||||||||+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999985
No 160
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.57 E-value=7e-07 Score=92.67 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=32.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
...+||+||||||+|+++|..|++.|++|+|||+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 45689999999999999999999999999999994
No 161
>PRK07190 hypothetical protein; Provisional
Probab=98.55 E-value=2.5e-07 Score=98.28 Aligned_cols=32 Identities=38% Similarity=0.434 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
.+||+||||||+|+++|..|++.|.+|+||||
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr 36 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDK 36 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999999999999999999999
No 162
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.54 E-value=3.3e-06 Score=87.62 Aligned_cols=36 Identities=33% Similarity=0.632 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCcEEEeeCC-ccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGD-VVG 136 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~~-~~G 136 (551)
++||+|||||.+|+++|.+|+++ |++|+|+|+. .+|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 37999999999999999999999 9999999994 354
No 163
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.53 E-value=2.7e-07 Score=95.70 Aligned_cols=33 Identities=27% Similarity=0.650 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.+||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~ 37 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPR 37 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 479999999999999999999999999999983
No 164
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.52 E-value=3.8e-07 Score=94.57 Aligned_cols=131 Identities=27% Similarity=0.422 Sum_probs=74.8
Q ss_pred EEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCC---ccC-----ChhhHh-h---HHH----HHH---HHhhh
Q 008850 105 IIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVP-----SKALLA-V---SGR----MRE---LQSEH 164 (551)
Q Consensus 105 vIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g---~~p-----~~~~~~-~---~~~----~~~---~~~~~ 164 (551)
+|||||+||++||+.|++.|++|+|+|+ +.+|+.+...+ |.. ...+.. . ... +.. -....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999 66775443221 211 111100 0 000 110 11123
Q ss_pred hhhhcCcccccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee----CCcEEEeCcceEEEeCeE
Q 008850 165 HMKALGLQVHAA----GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL----GPQKVKFGTDNIVTAKDI 235 (551)
Q Consensus 165 ~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~----~~~~v~~~~g~~i~~d~l 235 (551)
++...|++.... .+.. ......+...+...+++.+++++.+... .+ +...+.+ ++.++.+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~-------~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPC-------SDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKV 152 (400)
T ss_pred HHHHcCCeeEEecCCEeECC-------CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEE
Confidence 455566543211 0100 0012344555666677789998887532 22 1234444 3467999999
Q ss_pred EEeCCCCC
Q 008850 236 IIATGSVP 243 (551)
Q Consensus 236 VlAtG~~p 243 (551)
|+|+|...
T Consensus 153 IlAtG~~s 160 (400)
T TIGR00275 153 ILATGGLS 160 (400)
T ss_pred EECCCCcc
Confidence 99999753
No 165
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.51 E-value=9.5e-07 Score=94.49 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=44.2
Q ss_pred cCCCceeeCCCCccccCCCCCCCcEEEecCCCCCC--------CcHHHHHHHHHHHHHHHcC
Q 008850 384 TQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKM--------MLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 384 ~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~~--------~~~~~A~~~g~~aa~~i~g 437 (551)
...|.+.+|+++|+.+..|+.+||+||+|.|++.. .....++-.|++|+++++.
T Consensus 440 ~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~ 501 (506)
T PRK06481 440 YTMGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAE 501 (506)
T ss_pred ecccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999999999997541 1345678889999998874
No 166
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.50 E-value=7.5e-07 Score=92.33 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=32.9
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
++..+||+|||||++|+++|..|++.|++|+|||+.
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 344689999999999999999999999999999994
No 167
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.49 E-value=2.9e-07 Score=94.61 Aligned_cols=134 Identities=19% Similarity=0.130 Sum_probs=73.3
Q ss_pred cEEEECCChHHHHHHHHH--HHcCCcEEEeeC-Ccc--CcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccc
Q 008850 103 DLIIIGAGVGGHGAALHA--VEKGLKTAIIEG-DVV--GGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l--~~~g~~V~liE~-~~~--GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
||+|||||+||+++|.+| .+.|++|+|||+ ... ...+ .| |...+.+.. ++.+....|. ..-+......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~-tW-~~~~~~~~~----~~~~v~~~w~-~~~v~~~~~~ 73 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR-TW-CFWEKDLGP----LDSLVSHRWS-GWRVYFPDGS 73 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc-cc-ccccccccc----hHHHHheecC-ceEEEeCCCc
Confidence 899999999999999999 677999999998 444 3332 11 211111110 1111111110 0100000000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEeCC----cEEEeCcceEEEeCeEEEeCCCCCC
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP----QKVKFGTDNIVTAKDIIIATGSVPF 244 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~v~~~~g~~i~~d~lVlAtG~~p~ 244 (551)
..... ..|..--...+...+...+...++.++...+..++. ..+.+.+|.+++++.||-|+|..+.
T Consensus 74 ~~~~~-~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 74 RILID-YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEcc-cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 00000 011000124455555566666677777777664432 3567788889999999999995543
No 168
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.48 E-value=1.8e-06 Score=90.47 Aligned_cols=39 Identities=36% Similarity=0.670 Sum_probs=33.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCccccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~ 141 (551)
||||||+|.||++||++|++.|.+|+|||| +..||....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~ 40 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAF 40 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccccccc
Confidence 899999999999999999999999999999 666876554
No 169
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.47 E-value=2.1e-07 Score=70.03 Aligned_cols=36 Identities=36% Similarity=0.630 Sum_probs=32.8
Q ss_pred EECCChHHHHHHHHHHHcCCcEEEeeC-CccCccccc
Q 008850 106 IIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 106 IIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~ 141 (551)
|||||++||++|..|++.|++|+|+|+ +.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence 899999999999999999999999999 889998763
No 170
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.47 E-value=1.1e-06 Score=91.65 Aligned_cols=34 Identities=35% Similarity=0.605 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV 134 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~ 134 (551)
.+||+|||||++|+++|+.|++.|++|+|||+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3799999999999999999999999999999943
No 171
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.47 E-value=5.3e-07 Score=92.37 Aligned_cols=35 Identities=34% Similarity=0.623 Sum_probs=32.0
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCcEEEeeC-CccCc
Q 008850 103 DLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGG 137 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~-~~~GG 137 (551)
||+|||||+||+++|..|++. |++|+|+|+ +..+|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999987 999999999 55665
No 172
>PRK06184 hypothetical protein; Provisional
Probab=98.46 E-value=5.6e-07 Score=96.51 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
++||+||||||+|+++|..|++.|++|+||||
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~ 34 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEK 34 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 48999999999999999999999999999999
No 173
>PRK07121 hypothetical protein; Validated
Probab=98.46 E-value=3.8e-06 Score=89.76 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=45.1
Q ss_pred cCCCceeeCCC-CccccCCCCCCCcEEEecCCCCCC--------CcHHHHHHHHHHHHHHHcCC
Q 008850 384 TQRGFVPVDER-MRVIDANGNLVPHLYCIGDANGKM--------MLAHAASAQGISVVEQVTGR 438 (551)
Q Consensus 384 ~~~G~i~Vd~~-~~~~~~~~t~~~~IyA~GD~~~~~--------~~~~~A~~~g~~aa~~i~g~ 438 (551)
...|.+.+|++ +|+.+..|..+||+||+|.+++.. .....|+-.|++|+++++++
T Consensus 427 ~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 427 FTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred eeccCeeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 35677999999 999999999999999999987431 23456888999999998754
No 174
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.45 E-value=1e-06 Score=92.23 Aligned_cols=35 Identities=37% Similarity=0.647 Sum_probs=32.3
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
...+||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 50 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQ 50 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecC
Confidence 34589999999999999999999999999999983
No 175
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.44 E-value=2.8e-07 Score=90.56 Aligned_cols=48 Identities=29% Similarity=0.535 Sum_probs=40.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHc------CCcEEEeeC-CccCcccccCCcc
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEK------GLKTAIIEG-DVVGGTCVNRGCV 145 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~------g~~V~liE~-~~~GG~~~~~g~~ 145 (551)
....+||+|||||||||+||++|+++ .++|.|+|| ..+||..+.-.++
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavi 127 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVI 127 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceee
Confidence 34569999999999999999999885 468999999 8899887754444
No 176
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.44 E-value=1.4e-06 Score=92.56 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=44.1
Q ss_pred cCCCceeeCCCCccccCCCCCCCcEEEecCCCCC-C--------CcHHHHHHHHHHHHHHHcC
Q 008850 384 TQRGFVPVDERMRVIDANGNLVPHLYCIGDANGK-M--------MLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 384 ~~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~-~--------~~~~~A~~~g~~aa~~i~g 437 (551)
...|.+.+|+++|+.+..|+.+||+||+|.|++. . .....++-.|++|+++++.
T Consensus 397 ~t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~ 459 (466)
T PRK08274 397 FTYLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAAR 459 (466)
T ss_pred eecccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHH
Confidence 3677899999999999888999999999999754 1 2345578889999999874
No 177
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.44 E-value=2.3e-06 Score=85.19 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=72.3
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCc---C--------CCCC-----CHHHHHHHHHHHhCCCceEEEeceEE
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ---L--------MPGF-----DPEIGKLAQRVLINPRKIDYHTGVFA 334 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------l~~~-----~~~~~~~~~~~l~~~~gi~~~~~~~~ 334 (551)
+|+|||+|+.|+++|..|.+.|.+|+++++.+. + .|.+ +.++.+.+.+.+++ .+++++. ..+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~~~-~~v 79 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVK-FGAEIIY-EEV 79 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHH-cCCeEEE-EEE
Confidence 589999999999999999999999999997651 1 1322 25677778887776 7999988 455
Q ss_pred E---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCC
Q 008850 335 T---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNG 374 (551)
Q Consensus 335 ~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~ 374 (551)
. .+++...+++.++ .++.+|.+++|+|..|+...
T Consensus 80 ~~v~~~~~~~~v~~~~~------~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 80 IKVDLSDRPFKVKTGDG------KEYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEEEecCCeeEEEeCCC------CEEEeCEEEECCCCCcccCC
Confidence 4 3334455655443 57999999999999887543
No 178
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.43 E-value=8.5e-07 Score=92.09 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=67.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||+|+.|+.+|..|++.|.+|+|||+ +.+.+.. .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~--------------------------------------~-- 184 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN--------------------------------------A-- 184 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh--------------------------------------c--
Confidence 4799999999999999999999999999998 3321110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-EeC---CcEEEeCcceEEEeCeEEEeCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILG---PQKVKFGTDNIVTAKDIIIATGSVPFV 245 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~---~~~v~~~~g~~i~~d~lVlAtG~~p~~ 245 (551)
...+...+...+++.||+++.+... .+. ...+.+.+++++.+|.||+|+|..|+.
T Consensus 185 ----------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 185 ----------PPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred ----------CHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 0123333445566789999987532 221 224556778889999999999998863
No 179
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.42 E-value=3.4e-06 Score=86.03 Aligned_cols=35 Identities=31% Similarity=0.650 Sum_probs=32.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGG 137 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG 137 (551)
||+|||||++|+++|.+|++.|++|+|||++.+++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccc
Confidence 79999999999999999999999999999975544
No 180
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.42 E-value=5.9e-06 Score=87.56 Aligned_cols=47 Identities=28% Similarity=0.536 Sum_probs=38.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHHc--CCcEEEeeCCcc--CcccccCCcc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDVV--GGTCVNRGCV 145 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~~~~--GG~~~~~g~~ 145 (551)
..++||+|||||..|+++|++|++. |.+|+|+|+..+ |.+..+.|++
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~ 72 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCM 72 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccc
Confidence 3458999999999999999999998 899999999655 3444455543
No 181
>PRK09126 hypothetical protein; Provisional
Probab=98.41 E-value=1.7e-06 Score=89.88 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
++||+||||||+|+++|..|++.|++|+|+||.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 589999999999999999999999999999994
No 182
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.41 E-value=1.2e-06 Score=91.15 Aligned_cols=32 Identities=34% Similarity=0.667 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
..||+|||||++|+++|..|++.|++|+|+||
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQ 35 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEee
Confidence 47999999999999999999999999999998
No 183
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=6e-06 Score=86.96 Aligned_cols=94 Identities=20% Similarity=0.190 Sum_probs=65.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+.+|..+++.|.+|+|+|+ +.+... .+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------------------------------------~~- 197 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR---------------------------------------EE- 197 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC---------------------------------------CC-
Confidence 4899999999999999999999999999998 321100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe--CCcEE-EeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GPQKV-KFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~~v-~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
..+...+...+++.||+++.+.. ..+ +...+ ...++.++.+|.||+|+|..|...
T Consensus 198 -----------~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 198 -----------PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 11222334556678999988753 222 22222 233457899999999999998854
No 184
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.38 E-value=5.1e-06 Score=85.68 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVG 136 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~G 136 (551)
++||+|||||+.|+++|.+|++.|++|+|||+...+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 489999999999999999999999999999996543
No 185
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.38 E-value=4e-07 Score=94.49 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..+||+|||||++|+++|..|++.|++|+|||+.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 37 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHA 37 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCC
Confidence 3589999999999999999999999999999984
No 186
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.37 E-value=6e-06 Score=87.64 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=65.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+.+|..|++.|.+|+|+|+. .+. |. .+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------~~------------------------------~~- 210 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL---------PG------------------------------ED- 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC---------CC------------------------------CC-
Confidence 58999999999999999999999999999983 211 10 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee--CCcE--EEeCcc--eEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQK--VKFGTD--NIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~~~--v~~~~g--~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+.+.+++.||+++.++.. .+ +... +.+.++ .++.+|.||+|+|..|...
T Consensus 211 -----------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 211 -----------AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 122223345566789999988532 22 2222 333444 4799999999999998765
No 187
>PRK11445 putative oxidoreductase; Provisional
Probab=98.36 E-value=2.7e-06 Score=86.87 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
|||+||||||||+++|..|++. ++|+|+|+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~ 32 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKK 32 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECC
Confidence 7999999999999999999999 999999983
No 188
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.36 E-value=4.4e-07 Score=93.89 Aligned_cols=33 Identities=36% Similarity=0.706 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.+||+||||||+|+++|+.|++.|++|+|||+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 379999999999999999999999999999983
No 189
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.35 E-value=1.6e-06 Score=90.14 Aligned_cols=34 Identities=38% Similarity=0.531 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHc---CCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK---GLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~---g~~V~liE~~ 133 (551)
.++||+||||||+|+++|+.|++. |++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 358999999999999999999998 9999999993
No 190
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.35 E-value=5.2e-06 Score=89.86 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=43.6
Q ss_pred CCCceeeCCCCccccCCCCCCCcEEEecCCCC----C---C-----CcHHHHHHHHHHHHHHHcC
Q 008850 385 QRGFVPVDERMRVIDANGNLVPHLYCIGDANG----K---M-----MLAHAASAQGISVVEQVTG 437 (551)
Q Consensus 385 ~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~----~---~-----~~~~~A~~~g~~aa~~i~g 437 (551)
..|.+.+|+++|+.+..|+.+||+||+|.|++ . + .....|+..|++|+++++.
T Consensus 484 T~GGl~id~~~qVld~dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 484 TLGGLETDLDSRVLGADGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred EccCEeECCCCceeCCCCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 56779999999999999999999999999974 1 1 1245678889999998863
No 191
>PRK08013 oxidoreductase; Provisional
Probab=98.34 E-value=3.2e-06 Score=87.99 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
++||+||||||+|+++|..|++.|++|+|||+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 48999999999999999999999999999998
No 192
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.33 E-value=1.7e-06 Score=90.14 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CcEEEeeCC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKG--LKTAIIEGD 133 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g--~~V~liE~~ 133 (551)
|||+||||||+|+++|..|++.| ++|+|||+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~ 35 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAA 35 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 79999999999999999999995 999999994
No 193
>PRK08244 hypothetical protein; Provisional
Probab=98.31 E-value=3e-06 Score=90.72 Aligned_cols=33 Identities=39% Similarity=0.507 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
++||+||||||+|+++|..|++.|++|+||||.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~ 34 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERL 34 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 379999999999999999999999999999983
No 194
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.31 E-value=3.6e-06 Score=87.73 Aligned_cols=33 Identities=39% Similarity=0.577 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.+||+||||||+|+++|..|++.|++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 589999999999999999999999999999983
No 195
>PRK07045 putative monooxygenase; Reviewed
Probab=98.30 E-value=1.8e-06 Score=89.41 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
..+||+||||||+|+++|+.|++.|++|+|+|+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVER 36 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 458999999999999999999999999999998
No 196
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.30 E-value=1.2e-06 Score=89.36 Aligned_cols=31 Identities=45% Similarity=0.732 Sum_probs=28.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
+||+|||||++|+++|+.|++.|++|+|||+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchh
Confidence 7999999999999999999999999999999
No 197
>PRK06185 hypothetical protein; Provisional
Probab=98.29 E-value=2.3e-06 Score=89.24 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
+..++||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 345689999999999999999999999999999984
No 198
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.28 E-value=2.5e-06 Score=88.32 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.+||+||||||+|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 479999999999999999999999999999995
No 199
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.28 E-value=4.7e-06 Score=90.55 Aligned_cols=37 Identities=30% Similarity=0.496 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGG 137 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG 137 (551)
++||||||+|.|||+||+++++.|.+|+||||. ..+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 479999999999999999999999999999994 4444
No 200
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.28 E-value=6.1e-05 Score=78.68 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=36.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc-cC--cccccCCcc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV-VG--GTCVNRGCV 145 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~-~G--G~~~~~g~~ 145 (551)
+||+|||||..|+++|.+|++.|++|+|+|++. +| .++.+.|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~ 48 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQL 48 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEE
Confidence 599999999999999999999999999999954 43 333344443
No 201
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.28 E-value=9.6e-06 Score=85.51 Aligned_cols=38 Identities=34% Similarity=0.702 Sum_probs=34.1
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CcEEEeeC-CccCcccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g-~~V~liE~-~~~GG~~~ 140 (551)
||||||+|.||++||+++++.| .+|+|||| +..||...
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~ 40 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSA 40 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCccc
Confidence 7999999999999999999999 99999999 56666544
No 202
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.27 E-value=8.5e-06 Score=84.23 Aligned_cols=31 Identities=42% Similarity=0.677 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKG-LKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g-~~V~liE~~ 133 (551)
||+||||||+|+++|..|++.| ++|+|+|+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~ 32 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEAN 32 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCC
Confidence 7999999999999999999999 999999983
No 203
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.27 E-value=8.7e-06 Score=84.63 Aligned_cols=95 Identities=26% Similarity=0.398 Sum_probs=69.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+++|||||+.|+..|..++++|.+|+|||+ +.+ +| .+|
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i---------Lp------------------------------~~D- 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI---------LP------------------------------GED- 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC---------CC------------------------------cCC-
Confidence 4799999999999999999999999999998 321 11 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEE-e---CC-cEEEeCcce--EEEeCeEEEeCCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI-L---GP-QKVKFGTDN--IVTAKDIIIATGSVPFVPK 247 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~---~~-~~v~~~~g~--~i~~d~lVlAtG~~p~~p~ 247 (551)
+++...+...+++.+++++.+.... . +. -.+.++++. ++.+|.|++|+|-.|+..+
T Consensus 214 -----------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 214 -----------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred -----------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 3455555666777789998886532 1 11 234555544 6889999999999998764
No 204
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.26 E-value=1.3e-06 Score=90.55 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.+||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECC
Confidence 379999999999999999999999999999993
No 205
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=1.7e-06 Score=88.50 Aligned_cols=134 Identities=24% Similarity=0.352 Sum_probs=72.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC--CccCcccccCCccCChhhHhhHHHHHHHHh-----hhhhhhcCccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG--DVVGGTCVNRGCVPSKALLAVSGRMRELQS-----EHHMKALGLQV 173 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~--~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~-----~~~~~~~g~~~ 173 (551)
.|||+|||||.||+.||..+++.|++++|+-- +.+| .-.|.|+-.-.......+.+.. ......-++++
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig----~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~ 79 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG----EMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQF 79 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee----ecccccccCCcccceeEEeehhccchHHHhhhhcCCch
Confidence 49999999999999999999999999999875 4444 2234442111000000000000 00111112221
Q ss_pred c------ccccCHHHHHHHHHHHHHHHHHHHHHHHH-HcCeEEEeceEEEe---CC---cEEEeCcceEEEeCeEEEeCC
Q 008850 174 H------AAGYDRQGVADHANNLATKIRNNLTNSMK-ALGVDILTGVGTIL---GP---QKVKFGTDNIVTAKDIIIATG 240 (551)
Q Consensus 174 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~---~~---~~v~~~~g~~i~~d~lVlAtG 240 (551)
. .+..-....+.. ...+...++..++ ..+++++.+.+... +. ..|.+.+|..+.++.|||+||
T Consensus 80 r~LN~sKGPAVra~RaQaD----k~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTG 155 (621)
T COG0445 80 RMLNSSKGPAVRAPRAQAD----KWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTG 155 (621)
T ss_pred hhccCCCcchhcchhhhhh----HHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeec
Confidence 1 000100000000 0122333333333 35888888876522 22 456788899999999999999
Q ss_pred CC
Q 008850 241 SV 242 (551)
Q Consensus 241 ~~ 242 (551)
..
T Consensus 156 TF 157 (621)
T COG0445 156 TF 157 (621)
T ss_pred cc
Confidence 64
No 206
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.24 E-value=2.1e-05 Score=80.74 Aligned_cols=34 Identities=44% Similarity=0.706 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCcc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~ 135 (551)
+||+|||||.+|+++|.+|++.|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999544
No 207
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.24 E-value=8.8e-06 Score=85.62 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=70.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+.+|..|++.|.+|+|+++. .+... ++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~---------------------------------------~d- 188 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL---------------------------------------MD- 188 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh---------------------------------------cC-
Confidence 48999999999999999999999999999973 21100 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece-EEEeCCcEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTILGPQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
+++...+.+.+++.||+++.+. +..++...+.+.+++++.+|.|++|+|.+|+..
T Consensus 189 -----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 189 -----------ADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred -----------HHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChH
Confidence 2233344556677899998765 334455567777777899999999999998743
No 208
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.24 E-value=2.8e-05 Score=80.30 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCcc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~ 135 (551)
+||+|||||.+|+++|++|++.|++|+|||+...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 5999999999999999999999999999999543
No 209
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.23 E-value=4.5e-06 Score=86.35 Aligned_cols=31 Identities=42% Similarity=0.701 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
||+|||||++|+++|..|++.|++|+|+||.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEAT 31 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 7999999999999999999999999999994
No 210
>PRK07236 hypothetical protein; Provisional
Probab=98.22 E-value=1.5e-05 Score=82.56 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..++|+|||||++|+++|..|++.|++|+|+||.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 3479999999999999999999999999999993
No 211
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.21 E-value=1.4e-05 Score=93.46 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=38.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
.+.++||||||+|.||++||+++++.|.+|+|+|| +..||...
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 45679999999999999999999999999999999 67787654
No 212
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.21 E-value=1.5e-05 Score=62.22 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
+|+|||||+.|+.+|..|++.|.+|+||++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEecc
Confidence 4899999999999999999999999999983
No 213
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.20 E-value=2.4e-06 Score=88.60 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.+||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~ 34 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERR 34 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 479999999999999999999999999999993
No 214
>PRK07588 hypothetical protein; Provisional
Probab=98.20 E-value=8.5e-06 Score=84.53 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
||+|||||++|+++|+.|++.|++|+|+|+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIER 31 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeC
Confidence 899999999999999999999999999998
No 215
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.18 E-value=4.9e-06 Score=89.99 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..+||+||||||+|+++|..|++.|++|+||||.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~ 42 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERW 42 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4589999999999999999999999999999993
No 216
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.16 E-value=6.5e-06 Score=89.27 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=32.4
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
...+||+||||||+|+++|..|++.|++|+||||.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~ 55 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDD 55 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 35589999999999999999999999999999993
No 217
>PRK06126 hypothetical protein; Provisional
Probab=98.16 E-value=3.9e-05 Score=83.24 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=32.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
...+||+||||||+|+++|+.|++.|++|+|||+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~ 39 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERK 39 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 44589999999999999999999999999999983
No 218
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.16 E-value=5.4e-06 Score=85.41 Aligned_cols=32 Identities=38% Similarity=0.630 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
+||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 69999999999999999999999999999983
No 219
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.15 E-value=1.1e-05 Score=87.23 Aligned_cols=54 Identities=39% Similarity=0.722 Sum_probs=44.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCC-c--cCChhhHhh
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG-C--VPSKALLAV 153 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g-~--~p~~~~~~~ 153 (551)
.++||||||+|.+|++||+.+++.|.+|+|||| ..+||++...+ | +|.+.+...
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~ 62 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKA 62 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHH
Confidence 368999999999999999999999999999999 56789876554 5 566655443
No 220
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.14 E-value=4.1e-05 Score=79.89 Aligned_cols=37 Identities=32% Similarity=0.584 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-CC-cEEEeeCCccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK-GL-KTAIIEGDVVG 136 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~-g~-~V~liE~~~~G 136 (551)
..+||+|||||..|+++|.+|++. |. +|+|||+..+|
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG 67 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence 348999999999999999999995 85 89999996543
No 221
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.14 E-value=2.6e-05 Score=86.45 Aligned_cols=33 Identities=33% Similarity=0.581 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.+||+|||||.+|+++|.+|+++|++|+|+|+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~ 292 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEAD 292 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence 379999999999999999999999999999995
No 222
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.14 E-value=2.2e-06 Score=91.17 Aligned_cols=40 Identities=43% Similarity=0.713 Sum_probs=37.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
.+||||||||++||+||..|+++|++|+|+|| ..+||.+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceE
Confidence 48999999999999999999999999999999 67888665
No 223
>PRK06996 hypothetical protein; Provisional
Probab=98.14 E-value=1.1e-05 Score=83.98 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=31.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcC----CcEEEeeCC
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKG----LKTAIIEGD 133 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g----~~V~liE~~ 133 (551)
....+||+||||||+|+++|..|++.| ++|+|||+.
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~ 47 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAR 47 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCC
Confidence 344589999999999999999999986 479999994
No 224
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.12 E-value=3.4e-05 Score=82.06 Aligned_cols=94 Identities=23% Similarity=0.347 Sum_probs=64.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||+|+.|+.+|..+++.|.+|+||++. .+.. ..+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------------~~d- 223 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA---------------------------------------AAD- 223 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC---------------------------------------cCC-
Confidence 58999999999999999999999999999983 2110 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe--CCc--EEEeCc--c--eEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GPQ--KVKFGT--D--NIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~--~v~~~~--g--~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...++..||+++.+.. ..+ +.. .+...+ + .++.+|.|++|+|..|...
T Consensus 224 -----------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 224 -----------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred -----------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 12223334455668999998753 222 222 233322 2 4699999999999998865
No 225
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.12 E-value=2e-05 Score=81.24 Aligned_cols=94 Identities=15% Similarity=0.309 Sum_probs=66.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+.+|..|++.|.+|+++++ +.+.... .+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~--------------------------------------~~- 182 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL--------------------------------------MP- 182 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh--------------------------------------CC-
Confidence 5799999999999999999999999999997 3211000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEeC----CcEEEeCcceEEEeCeEEEeCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILG----PQKVKFGTDNIVTAKDIIIATGSVPFV 245 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~----~~~v~~~~g~~i~~d~lVlAtG~~p~~ 245 (551)
..+...+...+++.||+++.+.. ..+. ...+.+.++.++.+|.||+|+|..|..
T Consensus 183 -----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 183 -----------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred -----------HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 12223344556678999987653 2221 234666778899999999999998863
No 226
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.10 E-value=0.00014 Score=79.27 Aligned_cols=44 Identities=43% Similarity=0.722 Sum_probs=39.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNR 142 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~ 142 (551)
..++||+|||+|++|+++|..+++.|++|+|||| ..+||++...
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s 58 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS 58 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence 4468999999999999999999999999999999 6778887644
No 227
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.09 E-value=2.8e-05 Score=81.72 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=66.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+.+|..|++.|.+|++|++. .+... .++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~--------------------------------------~~~- 178 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK--------------------------------------LFD- 178 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc--------------------------------------ccC-
Confidence 58999999999999999999999999999973 21000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEeC--CcEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILG--PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~--~~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
..+...+...+++.||+++.+.. ..++ ...+.+.+++++.+|.||+|+|..|...
T Consensus 179 -----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 179 -----------EEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 12223344556678999987753 2222 2223556677899999999999988643
No 228
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.09 E-value=2.5e-05 Score=83.08 Aligned_cols=95 Identities=23% Similarity=0.374 Sum_probs=65.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||++|+.+|..|++.|.+|+|||+. .+. |. .+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il---------~~------------------------------~~- 220 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL---------PT------------------------------ED- 220 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC---------Cc------------------------------CC-
Confidence 58999999999999999999999999999983 210 00 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee----CCcE--EEeCcc--eEEEeCeEEEeCCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL----GPQK--VKFGTD--NIVTAKDIIIATGSVPFVPK 247 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~----~~~~--v~~~~g--~~i~~d~lVlAtG~~p~~p~ 247 (551)
..+...+...+++.||+++.++.. .+ +... +.+.++ .++.+|.||+|+|..|....
T Consensus 221 -----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 221 -----------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred -----------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence 123333445566789999988532 22 2222 222344 46999999999999987643
No 229
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=3.8e-06 Score=88.54 Aligned_cols=42 Identities=33% Similarity=0.534 Sum_probs=38.0
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
...++|||||||.|||+||.+|.+.|++|+|+|. +++||...
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 3457999999999999999999999999999998 88988765
No 230
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.08 E-value=4e-05 Score=78.49 Aligned_cols=37 Identities=41% Similarity=0.659 Sum_probs=33.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC--CcEEEeeC-CccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVG 136 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g--~~V~liE~-~~~G 136 (551)
.++||+|||||..|+++|.+|.+++ ++|+|+|| +.+|
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 3589999999999999999999998 99999999 5554
No 231
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=3.9e-05 Score=81.30 Aligned_cols=94 Identities=30% Similarity=0.370 Sum_probs=65.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+++|||||+.|+.+|..+++.|.+|+|+++. .+. | ..+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll---------~------------------------------~~d- 210 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------P------------------------------GED- 210 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------c------------------------------ccc-
Confidence 58999999999999999999999999999983 211 0 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe--CCcEEEe-Ccc--eEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GPQKVKF-GTD--NIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~~v~~-~~g--~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+.+.+++.||+++.++. ..+ +...+.+ .++ .++.+|.||+|+|..|+..
T Consensus 211 -----------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 211 -----------EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred -----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 22333444566778999998853 222 2222332 222 4699999999999998764
No 232
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.06 E-value=2.5e-05 Score=82.24 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCeEEEeceEEEe---CC---cEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 192 TKIRNNLTNSMKALGVDILTGVGTIL---GP---QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~~~~~~~~---~~---~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+.+...+.||+++.+++..+ +. ..|.+.+|+++++|.+|=|||....+.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCC
T ss_pred HHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhh
Confidence 45666777788888999999986533 22 256677889999999999999764443
No 233
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.06 E-value=3.3e-05 Score=82.02 Aligned_cols=94 Identities=23% Similarity=0.329 Sum_probs=65.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+.+|..|++.|.+|+++++ +.+. |. ++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~~------------------------------~~- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL---------PG------------------------------ED- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC---------Cc------------------------------CC-
Confidence 5899999999999999999999999999998 3211 00 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEeC--C--cEEEeCcc---eEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILG--P--QKVKFGTD---NIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~--~--~~v~~~~g---~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+++.||+++.+.. ..++ . ..+.+.++ +++.+|.||+|+|..|...
T Consensus 213 -----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 213 -----------KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 12223344556678999998853 2221 2 22333444 6799999999999998754
No 234
>PRK07208 hypothetical protein; Provisional
Probab=98.05 E-value=4.5e-06 Score=89.11 Aligned_cols=42 Identities=33% Similarity=0.566 Sum_probs=38.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
+.+.||+|||||++||+||..|+++|++|+|+|+ +.+||.|.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 4457999999999999999999999999999999 88999875
No 235
>PRK06753 hypothetical protein; Provisional
Probab=98.05 E-value=1.7e-05 Score=81.71 Aligned_cols=31 Identities=39% Similarity=0.622 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 7999999999999999999999999999983
No 236
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.05 E-value=9.1e-06 Score=85.54 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHH----cCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVE----KGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~----~g~~V~liE~ 132 (551)
|||+||||||+|+++|..|++ .|++|+|||+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 699999999999999999998 7999999998
No 237
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.05 E-value=4.1e-05 Score=80.20 Aligned_cols=92 Identities=22% Similarity=0.349 Sum_probs=68.5
Q ss_pred ccEEEECCChHHHHHHHHHHH--------------cCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhh
Q 008850 102 YDLIIIGAGVGGHGAALHAVE--------------KGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHM 166 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~--------------~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~ 166 (551)
.+|+|||||+.|+..|..|++ .+.+|+||++ +.+...
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---------------------------- 225 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---------------------------- 225 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc----------------------------
Confidence 389999999999999999875 3688999997 322110
Q ss_pred hhcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece-EEEeCCcEEEeCcceEEEeCeEEEeCCCCCC
Q 008850 167 KALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTILGPQKVKFGTDNIVTAKDIIIATGSVPF 244 (551)
Q Consensus 167 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~ 244 (551)
++ +.+.....+.+++.||+++.++ +..++...+.+.+|+++.+|.+|+++|..|.
T Consensus 226 -----------~~------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 226 -----------FD------------QALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred -----------CC------------HHHHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc
Confidence 11 2233445566778999999775 4455566788888889999999999998775
No 238
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.02 E-value=4.3e-05 Score=81.09 Aligned_cols=95 Identities=24% Similarity=0.259 Sum_probs=67.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..+|+|||||+.|+.+|..+++.|.+|+|||+ +.+.. .++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------------~~d 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS---------------------------------------FLD 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC---------------------------------------cCC
Confidence 35899999999999999999999999999998 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee---C-CcEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---G-PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~-~~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+++.||+++.+... .+ + ...+.+.++.++.+|.||+|+|.+|+..
T Consensus 216 ------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 216 ------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred ------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 223334445566789999887532 22 1 1234455677899999999999998754
No 239
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.01 E-value=7.2e-05 Score=72.25 Aligned_cols=37 Identities=32% Similarity=0.376 Sum_probs=33.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV 134 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~ 134 (551)
+.+..||+|||+|.-|+++|.+|++.|.+++++|+..
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 3455899999999999999999999999999999843
No 240
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.01 E-value=0.00013 Score=76.83 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=71.4
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-----------------------------------------
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG----------------------------------------- 307 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 307 (551)
.++|+|||+|++|+-.|..|.+.|.+|+++++++.+...
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 589999999999999999999999999999976532100
Q ss_pred -C---C---------------HHHHHHHHHHHhCCCceE--EEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEE
Q 008850 308 -F---D---------------PEIGKLAQRVLINPRKID--YHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAAL 363 (551)
Q Consensus 308 -~---~---------------~~~~~~~~~~l~~~~gi~--~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi 363 (551)
+ + .++.+++++..+. .++. +.+++.+. ..++...|+..++ ++...+..+|.||
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~-fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~--~~~~~~~~~d~VI 166 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFARE-FKIEEMVRFETEVVRVEPVDGKWRVQSKNS--GGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHH-cCCcceEEecCEEEEEeecCCeEEEEEEcC--CCceEEEEcCEEE
Confidence 0 0 2455566666654 6776 77787776 3345566666543 1122356899999
Q ss_pred Eeec--CCCCCC
Q 008850 364 IATG--RAPFTN 373 (551)
Q Consensus 364 ~a~G--~~p~~~ 373 (551)
+|+| ..|+..
T Consensus 167 vAtG~~~~P~~P 178 (461)
T PLN02172 167 VCNGHYTEPNVA 178 (461)
T ss_pred EeccCCCCCcCC
Confidence 9999 466654
No 241
>PRK12839 hypothetical protein; Provisional
Probab=98.00 E-value=1.8e-05 Score=85.74 Aligned_cols=55 Identities=31% Similarity=0.595 Sum_probs=46.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCC---ccCChhhHh
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVPSKALLA 152 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g---~~p~~~~~~ 152 (551)
+..++||+|||+|.+|++||+.+++.|.+|+|||| ..+||++...+ |.|.+.+..
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~ 63 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLAR 63 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhh
Confidence 34568999999999999999999999999999999 67899988765 577665543
No 242
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.00 E-value=3.9e-05 Score=80.04 Aligned_cols=93 Identities=28% Similarity=0.425 Sum_probs=69.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+++|||+|+.|+.+|..|+++|++|+++|+ +.+++....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------------------------------- 177 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------------------------------- 177 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh---------------------------------------
Confidence 6999999999999999999999999999998 555543110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEeCCc----E---EEeCcceEEEeCeEEEeCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILGPQ----K---VKFGTDNIVTAKDIIIATGSVPF 244 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----~---v~~~~g~~i~~d~lVlAtG~~p~ 244 (551)
..+...+...++..||+++.+.. ..++.. . +...++..+.+|.+++++|.+|.
T Consensus 178 -----------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 178 -----------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred -----------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 23334455667778999877764 333221 1 45566788999999999999985
No 243
>PRK06116 glutathione reductase; Validated
Probab=97.99 E-value=5.4e-05 Score=80.07 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=67.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc-cCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||+|+.|+..|..|++.|.+|+++++.. +.. .++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~~- 207 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR---------------------------------------GFD- 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc---------------------------------------ccC-
Confidence 589999999999999999999999999999732 100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe---CC--cEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL---GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~~--~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
..+...+...+++.||+++.++. ..+ +. ..+.+.+++++.+|.||+|+|..|+..
T Consensus 208 -----------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 208 -----------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred -----------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 12333444556678999998753 222 11 345566778899999999999998765
No 244
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.99 E-value=5.5e-05 Score=79.84 Aligned_cols=94 Identities=22% Similarity=0.314 Sum_probs=66.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+++|||+|+.|+.+|..+++.|.+|+++++. .+. | .++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------~------------------------------~~d- 206 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL---------R------------------------------GFD- 206 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---------c------------------------------ccC-
Confidence 47999999999999999999999999999973 210 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe----CCcEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL----GPQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~----~~~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
+++...+...+++.||+++.+.. ..+ +...+.+.++.++.+|.||+|+|..|+..
T Consensus 207 -----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 207 -----------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 12223344556678999998753 222 12345555677899999999999988754
No 245
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.99 E-value=2.1e-05 Score=88.47 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=68.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+++|||||+.|+.+|..|++.|.+|+|||+. .+... .++
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~--------------------------------------~ld- 181 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK--------------------------------------QLD- 181 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh--------------------------------------hcC-
Confidence 47999999999999999999999999999972 21000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee-C---CcEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL-G---PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~---~~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
+.....+...++..||+++.+... .+ . ...+.+.+|+++.+|.||+|+|.+|+..
T Consensus 182 -----------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 182 -----------QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence 122333455667789999988632 22 1 1346677888999999999999998753
No 246
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.98 E-value=7.3e-06 Score=83.38 Aligned_cols=40 Identities=30% Similarity=0.604 Sum_probs=37.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~ 141 (551)
+||+|||||++|+++|..|++.|.+|+|+|+ +.+||.|..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 6999999999999999999999999999999 789998764
No 247
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.97 E-value=3.1e-05 Score=78.41 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=75.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
-.|+++|+|..|+.+|..|...+++|++|++.. .|+|.
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~--------~~~~~---------------------------------- 251 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP--------WLLPR---------------------------------- 251 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCc--------cchhh----------------------------------
Confidence 579999999999999999999999999999842 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEe-----C--CcEEEeCcceEEEeCeEEEeCCCCCCCCC
Q 008850 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL-----G--PQKVKFGTDNIVTAKDIIIATGSVPFVPK 247 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~--~~~v~~~~g~~i~~d~lVlAtG~~p~~p~ 247 (551)
-+...+.+.+...+++.||+++.++.... + ...|.+.++.++.+|.||+.+|+.|....
T Consensus 252 -------lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 252 -------LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF 317 (478)
T ss_pred -------hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence 01245666777888899999999986421 1 12466778899999999999999998764
No 248
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.97 E-value=6.3e-05 Score=79.38 Aligned_cols=94 Identities=19% Similarity=0.242 Sum_probs=67.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+..|..|++.|.+|+||++ +.+... ++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~---------------------------------------~d- 206 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS---------------------------------------FD- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc---------------------------------------cC-
Confidence 5899999999999999999999999999998 321100 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-EeC---C--cEEEeCcc-eEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILG---P--QKVKFGTD-NIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~---~--~~v~~~~g-~~i~~d~lVlAtG~~p~~p 246 (551)
..+...+...++..||+++.+... .+. . ..+.+.++ .++.+|.||+|+|..|+..
T Consensus 207 -----------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 207 -----------SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 223334455667789999987532 221 1 23555556 5799999999999998764
No 249
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.96 E-value=6.3e-05 Score=79.88 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=65.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||+|+.|+.+|..|++.|.+|+|+++. .+. | ..+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~------------------------------~~d- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL---------P------------------------------REE- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC---------C------------------------------ccC-
Confidence 58999999999999999999999999999983 211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEece-EEEe--CC--cEEEeC---cceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--GP--QKVKFG---TDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~--~~v~~~---~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...++..||+++.++ +..+ +. ..+.+. +++++.+|.||+|+|..|...
T Consensus 207 -----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 207 -----------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 1222334455667899999886 3222 21 223332 236799999999999998765
No 250
>PRK06370 mercuric reductase; Validated
Probab=97.96 E-value=7.3e-05 Score=79.35 Aligned_cols=94 Identities=22% Similarity=0.269 Sum_probs=65.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+.+|..+++.|.+|+|+++ +.+... .+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~---------------------------------------~~- 211 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR---------------------------------------ED- 211 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc---------------------------------------cC-
Confidence 5899999999999999999999999999998 321100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEeC--C--cEEEe---CcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILG--P--QKVKF---GTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~--~--~~v~~---~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...++..||+++.++. ..++ . ..+.+ +++.++.+|.||+|+|..|+..
T Consensus 212 -----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 212 -----------EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred -----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 12223344556678999998753 2221 1 12332 2345799999999999998754
No 251
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.95 E-value=4.3e-05 Score=79.50 Aligned_cols=31 Identities=42% Similarity=0.562 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
-+|+|||||++|+++|+.|++.|++|+|+|+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 4899999999999999999999999999998
No 252
>PRK05868 hypothetical protein; Validated
Probab=97.95 E-value=2.9e-05 Score=79.93 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
.||+|||||++|+++|..|++.|++|+|||+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 4899999999999999999999999999998
No 253
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.94 E-value=7.5e-05 Score=79.23 Aligned_cols=94 Identities=24% Similarity=0.317 Sum_probs=67.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+++|||+|+.|+.+|..|++.|.+|++|++ +.+... .+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~---------------------------------------~d- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG---------------------------------------ED- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC---------------------------------------CC-
Confidence 4899999999999999999999999999997 321110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe--CC--cEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~--~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
..+...+...+++.||+++.+.. ..+ +. ..+.+.+++++.+|.||+|+|..|...
T Consensus 218 -----------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 218 -----------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred -----------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 12233445566778999998753 222 12 234556678899999999999998764
No 254
>PLN02507 glutathione reductase
Probab=97.94 E-value=7.7e-05 Score=79.67 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=67.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+..|..+++.|.+|+|+++. .+.. .++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~---------------------------------------~~d- 243 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR---------------------------------------GFD- 243 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc---------------------------------------ccC-
Confidence 58999999999999999999999999999973 2110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe---C-CcEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL---G-PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~-~~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+++.||+++.+.. ..+ + ...+.+.++.++.+|.|++|+|..|...
T Consensus 244 -----------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 244 -----------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred -----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 22333444556778999998853 222 1 2235555677899999999999998754
No 255
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=1.7e-05 Score=79.64 Aligned_cols=37 Identities=35% Similarity=0.630 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC--CccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG--DVVG 136 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~--~~~G 136 (551)
..|||||||||.||+.||..+++.|.+.+++.. +.+|
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 459999999999999999999999999999886 4444
No 256
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.93 E-value=0.00014 Score=76.06 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
||+|||||.+|+++|.+|++.|++|+|+|++
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 8999999999999999999999999999995
No 257
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.93 E-value=1.1e-05 Score=90.52 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCcEEEeeCCc
Q 008850 103 DLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDV 134 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~~~ 134 (551)
+|+||||||||+++|+.|++. |++|+|+|+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 799999999999999999998 89999999943
No 258
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.92 E-value=6.6e-05 Score=77.21 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-Ccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV 135 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~ 135 (551)
||+|||||.+|+.+|..|++.|++|+|||+ +.+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 799999999999999999999999999997 443
No 259
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.91 E-value=5e-05 Score=86.52 Aligned_cols=93 Identities=24% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------C--CCCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------P--GFDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+|+|+|||+|+.|+..|..|++.|.+||++++.+.+. | .++.++.+...+.+++ .||++++++.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~-~Gv~f~~n~~vG--- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKL-LGGRFVKNFVVG--- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHh-hcCeEEEeEEec---
Confidence 47999999999999999999999999999999876543 2 2455566655566665 899999987542
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCC-CCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRA-PFT 372 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~-p~~ 372 (551)
..+++.+. ....+|.|++|||.. |..
T Consensus 381 --~dit~~~l------~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 381 --KTATLEDL------KAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred --cEEeHHHh------ccccCCEEEEeCCCCCCCc
Confidence 12444332 345799999999984 543
No 260
>PRK14694 putative mercuric reductase; Provisional
Probab=97.91 E-value=0.00011 Score=78.14 Aligned_cols=93 Identities=17% Similarity=0.291 Sum_probs=65.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
.+++|||+|+.|+..|..|++.|.+|++++++.+- |. .+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l---------~~------------------------------~~-- 217 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVL---------SQ------------------------------ED-- 217 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC---------CC------------------------------CC--
Confidence 58999999999999999999999999999863211 00 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe--CCc--EEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~--~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+++.||+++.+.. ..+ +.. .+.+++ .++.+|.||+|+|..|+..
T Consensus 218 ----------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 218 ----------PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCcC
Confidence 12333445566778999998743 222 222 233333 4699999999999998754
No 261
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.91 E-value=9.2e-05 Score=78.65 Aligned_cols=94 Identities=28% Similarity=0.389 Sum_probs=65.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+.+|..+++.|.+|+|+|+ +.+. |. .+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------~~------------------------------~d- 212 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL---------PN------------------------------ED- 212 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC---------Cc------------------------------cC-
Confidence 4899999999999999999999999999997 3211 10 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee--CCc--EEEeC--cc--eEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFG--TD--NIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~~--~v~~~--~g--~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+++.||+++.++.. .+ +.. .+.+. ++ .++.+|.||+|+|..|...
T Consensus 213 -----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 213 -----------AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred -----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 122334455667789999987532 22 122 23332 44 4799999999999998764
No 262
>PLN02576 protoporphyrinogen oxidase
Probab=97.90 E-value=1.3e-05 Score=85.87 Aligned_cols=41 Identities=37% Similarity=0.614 Sum_probs=37.8
Q ss_pred cccEEEECCChHHHHHHHHHHHc-CCcEEEeeC-CccCccccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~-g~~V~liE~-~~~GG~~~~ 141 (551)
++||+|||||++||+||..|.+. |++|+|+|+ +.+||.+..
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 36999999999999999999999 999999999 889998763
No 263
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.89 E-value=5.9e-05 Score=79.68 Aligned_cols=100 Identities=28% Similarity=0.341 Sum_probs=66.1
Q ss_pred ceEEEECCChhHHHHHHHHHhCC--CeEEEEcccCcC------CC----CC-C--HHHHHHHHHHHhCCCceEEEeceEE
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQL------MP----GF-D--PEIGKLAQRVLINPRKIDYHTGVFA 334 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~------l~----~~-~--~~~~~~~~~~l~~~~gi~~~~~~~~ 334 (551)
++|+|||+|+.|+.+|..|++.+ .+|+++++++.+ ++ .. + .+......+.+++ .||+++.+..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~V 79 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIK-SGIDVKTEHEV 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHH-CCCeEEecCEE
Confidence 47999999999999999999875 589999988753 11 11 1 1122223345555 79999888766
Q ss_pred E-eCCCcEEEEEecccCCCCCeEEe--cCEEEEeecCCCCCC
Q 008850 335 T-KDGKPVTIELIDAKTKEPKDTLE--VDAALIATGRAPFTN 373 (551)
Q Consensus 335 ~-~~~~~~~v~~~~g~~~~~~~~i~--~D~vi~a~G~~p~~~ 373 (551)
. .+.+...+++.+.. ++..++ +|.+++|||.+|+..
T Consensus 80 ~~id~~~~~v~~~~~~---~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 80 VKVDAKNKTITVKNLK---TGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEEECCCCEEEEEECC---CCCEEEecCCEEEECCCCCCCCC
Confidence 6 22222244444311 113445 999999999998765
No 264
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.89 E-value=9.9e-05 Score=78.88 Aligned_cols=94 Identities=23% Similarity=0.281 Sum_probs=67.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
.+++|||||+.|+..|..|++.|.+|+|+++..+.. .++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~---------------------------------------~~d-- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR---------------------------------------GFD-- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc---------------------------------------cCC--
Confidence 489999999999999999999999999998632110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee---C-CcEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---G-PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~-~~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
..+...+...+++.||+++.+... .+ + ...+.+.+++++.+|.||+|+|..|+..
T Consensus 222 ----------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 222 ----------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 123334455667789999988532 11 1 2245556677899999999999998754
No 265
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.89 E-value=0.00011 Score=73.03 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=69.6
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC-------------------------------------CCC---
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-------------------------------------GFD--- 309 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------~~~--- 309 (551)
..|+|||+|+.|+-.|..+++.|.+|+++++.+.+.. .|+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 4699999999999999999999999999987754321 011
Q ss_pred ---------------------------HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEec
Q 008850 310 ---------------------------PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEV 359 (551)
Q Consensus 310 ---------------------------~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~ 359 (551)
..+.+.+...+++ .||++++++.+. .++....+++.++ +++.|
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~-~gV~i~~~~~v~~v~~~~~~f~l~t~~g------~~i~~ 156 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEA-LGVTIRTRSRVSSVEKDDSGFRLDTSSG------ETVKC 156 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHH-cCcEEEecceEEeEEecCceEEEEcCCC------CEEEc
Confidence 1233455566665 899999999888 3444566766665 58999
Q ss_pred CEEEEeecC
Q 008850 360 DAALIATGR 368 (551)
Q Consensus 360 D~vi~a~G~ 368 (551)
|.+|+|+|-
T Consensus 157 d~lilAtGG 165 (408)
T COG2081 157 DSLILATGG 165 (408)
T ss_pred cEEEEecCC
Confidence 999999994
No 266
>PLN02268 probable polyamine oxidase
Probab=97.88 E-value=1.3e-05 Score=84.42 Aligned_cols=38 Identities=32% Similarity=0.607 Sum_probs=36.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
+|+|||||.+||+||..|.+.|++|+|+|+ +.+||.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 799999999999999999999999999999 89999875
No 267
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.87 E-value=0.00012 Score=78.66 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=72.8
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEccc--CcC--------CC----CCCHHHHHHHHHHHhCCCceEEEeceEE
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL--DQL--------MP----GFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~--------l~----~~~~~~~~~~~~~l~~~~gi~~~~~~~~ 334 (551)
...|+|||||+.|+..|..+++.|.+|+++... ..+ ++ ....++.+.+.+.+++ .+++++.+..+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~V 289 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKE-YDVDIMNLQRA 289 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHH-CCCEEEcCCEE
Confidence 458999999999999999999999999999653 111 01 1235677777887876 89999988776
Q ss_pred E---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCC
Q 008850 335 T---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 372 (551)
Q Consensus 335 ~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 372 (551)
. .+++...+++.++ .++.+|.|++|+|..|..
T Consensus 290 ~~I~~~~~~~~V~~~~g------~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 290 SKLEPAAGLIEVELANG------AVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEEecCCeEEEEECCC------CEEEcCEEEECCCCCcCC
Confidence 6 3334556665544 579999999999998754
No 268
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.87 E-value=0.00014 Score=78.16 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=73.2
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEccc--CcCC-----------C-CCCHHHHHHHHHHHhCCCceEEEeceE
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL--DQLM-----------P-GFDPEIGKLAQRVLINPRKIDYHTGVF 333 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~l-----------~-~~~~~~~~~~~~~l~~~~gi~~~~~~~ 333 (551)
....|+|||||+.|+..|..+++.|.+|+++... ..+. + ...+++.+.+.+.+++ .+|+++.+..
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~gv~i~~~~~ 289 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQ-YPIDLMENQR 289 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHH-hCCeEEcCCE
Confidence 3578999999999999999999999999998631 1111 0 1235566777777776 7999999877
Q ss_pred EE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCC
Q 008850 334 AT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 373 (551)
Q Consensus 334 ~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 373 (551)
+. .+++...+++.++ ..+.+|.+++|+|..|...
T Consensus 290 V~~I~~~~~~~~v~~~~g------~~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 290 AKKIETEDGLIVVTLESG------EVLKAKSVIVATGARWRKL 326 (515)
T ss_pred EEEEEecCCeEEEEECCC------CEEEeCEEEECCCCCcCCC
Confidence 66 3334455665544 5799999999999987543
No 269
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.87 E-value=1.7e-05 Score=74.30 Aligned_cols=39 Identities=33% Similarity=0.506 Sum_probs=35.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
.+|+|||+|++|++||..|++.|.+|+|+|| .-+||...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlA 41 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA 41 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchh
Confidence 3799999999999999999999999999999 67888765
No 270
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.86 E-value=0.00011 Score=78.19 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=65.9
Q ss_pred ccEEEECCChHHHHHHHHHHHc---CCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEK---GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~---g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (551)
.+++|||||+.|+..|..+... |.+|+|||+ +.+.. .
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~---------------------------------------~ 228 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR---------------------------------------G 228 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc---------------------------------------c
Confidence 5899999999999999766554 899999997 32110 0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-EeC---C--cEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILG---P--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~---~--~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
++ .++...+...+++.||+++.+... .+. . ..+.+.++.++.+|.||+|+|..|...
T Consensus 229 ~d------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 229 FD------------STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred cC------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 11 233344555667789999988632 221 1 245556677899999999999988754
No 271
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.86 E-value=1.4e-05 Score=84.50 Aligned_cols=38 Identities=34% Similarity=0.594 Sum_probs=35.6
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CcEEEeeC-CccCcccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g--~~V~liE~-~~~GG~~~ 140 (551)
+|+|||||+|||+||..|++.| ++|+|+|+ +.+||.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 6999999999999999999987 89999999 89999875
No 272
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.85 E-value=6.9e-05 Score=78.40 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CcEEEeeC-Ccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVV 135 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g-~~V~liE~-~~~ 135 (551)
+|+|||||++||++|..|++.| .+|+|+|| +.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 7999999999999999999998 59999999 443
No 273
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.85 E-value=0.00017 Score=76.52 Aligned_cols=94 Identities=23% Similarity=0.357 Sum_probs=64.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+..|..+++.|.+|+|||+ +.+. | .++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il---------~------------------------------~~d- 214 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC---------P------------------------------GTD- 214 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC---------C------------------------------CCC-
Confidence 5899999999999999999999999999997 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEeC----CcEEEeC-----cceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILG----PQKVKFG-----TDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~----~~~v~~~-----~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+++.||+++.+.. ..+. ...+.+. +++++.+|.||+|+|..|+..
T Consensus 215 -----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 215 -----------TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred -----------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 12223344566678999998853 2221 1122221 235799999999999988753
No 274
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.84 E-value=0.00016 Score=74.22 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=65.4
Q ss_pred ccEEEECCChHHHHHHHHHHH----cC--CcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVE----KG--LKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~----~g--~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (551)
.+|+|||+|++|+.+|..|++ .| .+|+|+..+.+...
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~------------------------------------- 188 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPG------------------------------------- 188 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCccccc-------------------------------------
Confidence 489999999999999999975 34 47988843221100
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEeCCcEEEeCcceEEEeCeEEEeCCCCCC
Q 008850 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILGPQKVKFGTDNIVTAKDIIIATGSVPF 244 (551)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~~~~g~~i~~d~lVlAtG~~p~ 244 (551)
++ ..+...+.+.+++.||+++.+.. ..++...+.+.++.++.+|.||+|+|..|.
T Consensus 189 --~~------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 189 --FP------------AKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred --CC------------HHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChh
Confidence 00 12233445566778999998853 345555777878889999999999998875
No 275
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.84 E-value=9.8e-05 Score=77.66 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=43.5
Q ss_pred CCCceeeCCCCccccCCCCCCCcEEEecCCCC-CC--------CcHHHHHHHHHHHHHHHcCC
Q 008850 385 QRGFVPVDERMRVIDANGNLVPHLYCIGDANG-KM--------MLAHAASAQGISVVEQVTGR 438 (551)
Q Consensus 385 ~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~-~~--------~~~~~A~~~g~~aa~~i~g~ 438 (551)
..|.+.+|+++|+.+.++..+||+||+|.|++ .. .....|+-.|++|+++++..
T Consensus 367 T~GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 367 TRYGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred eccceEECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 56779999999999988899999999999853 21 13456788899999998743
No 276
>PRK07846 mycothione reductase; Reviewed
Probab=97.84 E-value=0.00013 Score=77.01 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=63.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+++|||||+.|+.+|..|++.|.+|+|+++ +.+.. .++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~---------------------------------------~~d- 206 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR---------------------------------------HLD- 206 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc---------------------------------------ccC-
Confidence 5899999999999999999999999999998 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe--CC--cEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~--~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+ +.+++++.+.. ..+ +. ..+.+.++.++.+|.||+|+|.+|...
T Consensus 207 -----------~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 207 -----------DDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred -----------HHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 11111222222 35788887753 222 12 235556677899999999999998754
No 277
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.84 E-value=1.6e-05 Score=84.40 Aligned_cols=40 Identities=30% Similarity=0.509 Sum_probs=37.3
Q ss_pred ccEEEECCChHHHHHHHHHHHc----CCcEEEeeC-CccCccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEK----GLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~----g~~V~liE~-~~~GG~~~~ 141 (551)
.||+|||||++||+||..|.+. |++|+|+|+ +.+||.+..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 5899999999999999999998 999999999 889998763
No 278
>PRK07233 hypothetical protein; Provisional
Probab=97.83 E-value=1.7e-05 Score=83.45 Aligned_cols=38 Identities=29% Similarity=0.636 Sum_probs=35.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
+|+|||||++||+||..|++.|++|+|+|+ +.+||.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 599999999999999999999999999999 88999864
No 279
>PLN02568 polyamine oxidase
Probab=97.83 E-value=2.1e-05 Score=84.39 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=37.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcC-----CcEEEeeC-CccCcccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKG-----LKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g-----~~V~liE~-~~~GG~~~ 140 (551)
++.+||+|||||++||+||..|.+.| ++|+|+|+ +.+||.+.
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 34579999999999999999999887 89999999 88999876
No 280
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.82 E-value=7.4e-05 Score=69.74 Aligned_cols=94 Identities=23% Similarity=0.296 Sum_probs=59.9
Q ss_pred EEECCChhHHHHHHHHHhCCCe-EEEEcccCcCCC--------------C-------------CC---------------
Q 008850 273 AIVGSGYIGLEFSDVYTALGSE-VTFIEALDQLMP--------------G-------------FD--------------- 309 (551)
Q Consensus 273 ~VvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~--------------~-------------~~--------------- 309 (551)
+|||+|+.|+-+|..|.+.|.+ |+++++++.+.. . +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998744310 0 00
Q ss_pred -HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecC--CCCCC
Q 008850 310 -PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGR--APFTN 373 (551)
Q Consensus 310 -~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~--~p~~~ 373 (551)
+++.+++++..++ .++++.+++.+. .+++...|++.++ +++.+|.||+|+|. .|+..
T Consensus 81 ~~~v~~yl~~~~~~-~~l~i~~~~~V~~v~~~~~~w~v~~~~~------~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAER-FGLEIRFNTRVESVRRDGDGWTVTTRDG------RTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHH-TTGGEETS--EEEEEEETTTEEEEETTS-------EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhh-cCcccccCCEEEEEEEeccEEEEEEEec------ceeeeeeEEEeeeccCCCCcc
Confidence 1234556666665 788888888777 4555688888765 68899999999997 55544
No 281
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.82 E-value=1.8e-05 Score=84.64 Aligned_cols=39 Identities=28% Similarity=0.533 Sum_probs=36.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
.||||||||++||+||..|++.|++|+|+|+ +.+||.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 5899999999999999999999999999999 68998776
No 282
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.82 E-value=2.3e-05 Score=83.95 Aligned_cols=40 Identities=38% Similarity=0.645 Sum_probs=35.3
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccC
Q 008850 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVG 136 (551)
Q Consensus 97 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~G 136 (551)
++..++||+|||||+.|+++|..|+++|++|+|||+..++
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~ 41 (502)
T PRK13369 2 AEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA 41 (502)
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 3455699999999999999999999999999999996543
No 283
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.81 E-value=0.00018 Score=76.51 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=65.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
.+++|||||+.|+.+|..|++.|.+|+|++++.+. | .++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l---------~------------------------------~~d-- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL---------R------------------------------GFD-- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc---------c------------------------------ccC--
Confidence 47999999999999999999999999999863210 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee---CC-cEEEeCcc---eEEEeCeEEEeCCCCCCCC
Q 008850 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---GP-QKVKFGTD---NIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~~-~~v~~~~g---~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+++.||+++.+... .+ +. ..++..++ .++.+|.||+|+|..|+..
T Consensus 220 ----------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 220 ----------QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 223334455667789999987532 11 22 23444333 4799999999999988754
No 284
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.81 E-value=2e-05 Score=84.30 Aligned_cols=40 Identities=38% Similarity=0.622 Sum_probs=37.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~ 141 (551)
+||||||||.+||++|..|++.|++|+|+|| ..+||.|..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 5899999999999999999999999999999 778887764
No 285
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.81 E-value=2.4e-05 Score=83.81 Aligned_cols=37 Identities=38% Similarity=0.652 Sum_probs=33.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCcc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~ 135 (551)
...+||+|||||..|+++|..|+++|++|+|||+..+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4569999999999999999999999999999999554
No 286
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.79 E-value=0.00014 Score=73.94 Aligned_cols=101 Identities=21% Similarity=0.322 Sum_probs=75.7
Q ss_pred CceEEEECCChhHHHHHHHHHhCC--CeEEEEcccCcCC--CC--------C-CHHHHHHHHHHHhCCCceEEEeceEEE
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLM--PG--------F-DPEIGKLAQRVLINPRKIDYHTGVFAT 335 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--~~--------~-~~~~~~~~~~~l~~~~gi~~~~~~~~~ 335 (551)
.++|+|||||+-|+..+..|.+.- .+||+|++++..+ |. + ..++...+.+.+++..+|+++.+....
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ 82 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD 82 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence 478999999999999999999874 8899999988643 11 1 233445566777653459998887666
Q ss_pred eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCC
Q 008850 336 KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGL 375 (551)
Q Consensus 336 ~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l 375 (551)
.|-+...|++.++ .++++|.+++++|..++....
T Consensus 83 ID~~~k~V~~~~~------~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 83 IDRDAKKVTLADL------GEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EcccCCEEEeCCC------ccccccEEEEecCCcCCcCCC
Confidence 4444456777663 589999999999999988644
No 287
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.79 E-value=0.00078 Score=65.27 Aligned_cols=161 Identities=23% Similarity=0.207 Sum_probs=94.4
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-------------------------------------CC-H
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------------------------------------FD-P 310 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~-~ 310 (551)
.-.|+|||+|+.|+-.|..|++.|.+|.++++.+.+... .+ .
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999987543210 01 1
Q ss_pred HHHHHHHHHHhCCCceEEEeceEEE----eCC-CcEEEEEeccc-----CCCCCeEEecCEEEEeecCCCCCC-CC----
Q 008850 311 EIGKLAQRVLINPRKIDYHTGVFAT----KDG-KPVTIELIDAK-----TKEPKDTLEVDAALIATGRAPFTN-GL---- 375 (551)
Q Consensus 311 ~~~~~~~~~l~~~~gi~~~~~~~~~----~~~-~~~~v~~~~g~-----~~~~~~~i~~D~vi~a~G~~p~~~-~l---- 375 (551)
++...+.+...+ .|++++.++.+. .++ ....+...... ...+...+.++.||.|+|...... .+
T Consensus 105 ~l~~~L~~~A~~-~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 105 EAAAKLAAAAID-AGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred HHHHHHHHHHHH-cCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 222334444444 789999988766 233 33334332210 111235799999999999643321 00
Q ss_pred ---CCcccccc---cCCC-ceeeCCCCccccCCCCCCCcEEEecCCC----CCCCc---HHHHHHHHHHHHHHHcC
Q 008850 376 ---GLENINVV---TQRG-FVPVDERMRVIDANGNLVPHLYCIGDAN----GKMML---AHAASAQGISVVEQVTG 437 (551)
Q Consensus 376 ---~l~~~~l~---~~~G-~i~Vd~~~~~~~~~~t~~~~IyA~GD~~----~~~~~---~~~A~~~g~~aa~~i~g 437 (551)
.....|.. .+.| ...|+...+ -+||+|++|=.+ +.|+. ...-...|+.||+.|+.
T Consensus 184 ~~~~~~~~g~~~~~~~~~e~~v~~~t~~-------~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 184 PELGIEVPGEKSMWAERGEKLVVENTGE-------VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred CCcccccCCccccccCchHHHHHhcCCe-------EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 00101111 1111 223333333 579999999774 33432 22334678888887763
No 288
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=2.8e-05 Score=74.61 Aligned_cols=40 Identities=33% Similarity=0.610 Sum_probs=37.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~ 141 (551)
+|++|||+|.+|+..|..|+++|.+|+|||| +.+||.|-.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 7999999999999999999999999999999 899999864
No 289
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.78 E-value=0.00011 Score=82.80 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=65.4
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------CC--CCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+|+|+|||+|+.|+..|..|++.|.+|+++++.+.+. |. ++.+....-.+.+++ .||+++.++.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~-~GVe~~~gt~Vd--- 613 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKA-HGVKFEFGCSPD--- 613 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHH-cCCEEEeCceeE---
Confidence 36899999999999999999999999999999876542 22 233444444455555 799999986541
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
+.+.+. ....+|.||+|||..+.
T Consensus 614 ----i~le~L------~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 614 ----LTVEQL------KNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ----EEhhhh------eeccCCEEEECcCCCCC
Confidence 222222 34568999999998754
No 290
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.78 E-value=6.3e-05 Score=79.35 Aligned_cols=92 Identities=26% Similarity=0.337 Sum_probs=67.5
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------C--CCCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------P--GFDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+.|++.|..|++.|.+|+++++.+.+. + .++.++.+...+.+++ .||+++.+..+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~--- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKK-LGVTFRMNFLVG--- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHh-CCcEEEeCCccC---
Confidence 35799999999999999999999999999999876541 2 2456666666666765 899999886431
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecC-CCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 372 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 372 (551)
. .+.+.+. ...+|.||+|||. .|..
T Consensus 208 ~--~v~~~~~-------~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 208 K--TATLEEL-------FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred C--cCCHHHH-------HhhCCEEEEeCCCCCCCc
Confidence 1 1222221 2468999999997 5654
No 291
>PRK06847 hypothetical protein; Provisional
Probab=97.77 E-value=0.00022 Score=73.52 Aligned_cols=98 Identities=21% Similarity=0.222 Sum_probs=71.4
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC------------------------------------------
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP------------------------------------------ 306 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 306 (551)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 46899999999999999999999999999987643110
Q ss_pred ---CC-----------------CHHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEE
Q 008850 307 ---GF-----------------DPEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAAL 363 (551)
Q Consensus 307 ---~~-----------------~~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi 363 (551)
.+ ..++.+.+.+.+.+ .|++++.+..+. .+++.+.+++.++ +++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~~~v~~~~g------~~~~ad~vI 156 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARA-AGADVRLGTTVTAIEQDDDGVTVTFSDG------TTGRYDLVV 156 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHH-hCCEEEeCCEEEEEEEcCCEEEEEEcCC------CEEEcCEEE
Confidence 00 01233445555554 688999987776 3445566776654 578999999
Q ss_pred EeecCCCCCC
Q 008850 364 IATGRAPFTN 373 (551)
Q Consensus 364 ~a~G~~p~~~ 373 (551)
.|.|..+...
T Consensus 157 ~AdG~~s~~r 166 (375)
T PRK06847 157 GADGLYSKVR 166 (375)
T ss_pred ECcCCCcchh
Confidence 9999877653
No 292
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.75 E-value=8.8e-05 Score=78.54 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=68.0
Q ss_pred cCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------CC--CCHHHHHHHHHHHhCCCceEEEeceEEEeC
Q 008850 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKD 337 (551)
Q Consensus 267 ~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~ 337 (551)
..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. +. ++.++.....+.+++ .||+++.+..+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~-- 214 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLK-LGVEIRTNTEVG-- 214 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHH-cCCEEEeCCEEC--
Confidence 456899999999999999999999999999999887652 22 355666666677776 799999887542
Q ss_pred CCcEEEEEecccCCCCCeEEecCEEEEeecCC
Q 008850 338 GKPVTIELIDAKTKEPKDTLEVDAALIATGRA 369 (551)
Q Consensus 338 ~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 369 (551)
. .+++.+ ..+.+|.|++|||..
T Consensus 215 -~--~v~~~~-------~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 215 -R--DITLDE-------LRAGYDAVFIGTGAG 236 (457)
T ss_pred -C--ccCHHH-------HHhhCCEEEEccCCC
Confidence 1 122222 136799999999985
No 293
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.75 E-value=0.00012 Score=74.79 Aligned_cols=102 Identities=22% Similarity=0.198 Sum_probs=66.9
Q ss_pred ccCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC---------CCHHHHHHHHHHHhCCCceEEEeceEEE-
Q 008850 266 EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG---------FDPEIGKLAQRVLINPRKIDYHTGVFAT- 335 (551)
Q Consensus 266 ~~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~~gi~~~~~~~~~- 335 (551)
...+++|+|||+|+.|+++|..|++.|.+|+++++.+.+... ++.+......+.+.+ .+++++.++.+.
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~-~~i~~~~~~~v~~ 93 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEE-AGVVFHTRTKVCC 93 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHh-CCeEEecCcEEee
Confidence 345789999999999999999999999999999988765321 222333333445555 699999987764
Q ss_pred eCC------CcEEEEEecccCCCCCeEEecCEEEEeecC-CCCC
Q 008850 336 KDG------KPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 372 (551)
Q Consensus 336 ~~~------~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 372 (551)
.+. +......... +...+.+|.|++|+|. .|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~----~~~~~~~d~lviAtGs~~~~~ 133 (352)
T PRK12770 94 GEPLHEEEGDEFVERIVSL----EELVKKYDAVLIATGTWKSRK 133 (352)
T ss_pred ccccccccccccccccCCH----HHHHhhCCEEEEEeCCCCCCc
Confidence 111 1000010000 1123689999999998 4543
No 294
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.74 E-value=0.00033 Score=69.98 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
.+|+|||||.+|+++|..|.++|++|+|+|+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence 5899999999999999999999999999998
No 295
>PRK14727 putative mercuric reductase; Provisional
Probab=97.73 E-value=0.0003 Score=74.98 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=64.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
.+|+|||+|+.|+..|..+++.|.+|+||++..+ +|. ++
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~---------l~~------------------------------~d-- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL---------LFR------------------------------ED-- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---------CCc------------------------------ch--
Confidence 5899999999999999999999999999986321 000 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee--CCc--EEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~~--~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
..+...+...+++.||+++.+... .+ +.. .+...+ .++.+|.||+|+|..|+..
T Consensus 228 ----------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 228 ----------PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTH 286 (479)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCcc
Confidence 123334455667789999887532 22 122 333344 4689999999999998754
No 296
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.73 E-value=2.6e-05 Score=83.73 Aligned_cols=37 Identities=32% Similarity=0.624 Sum_probs=34.9
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 104 LIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 104 VvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
|||||||.+||+||..|++.|++|+|+|+ +.+||.|.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence 69999999999999999999999999999 78898776
No 297
>PRK13748 putative mercuric reductase; Provisional
Probab=97.73 E-value=0.00028 Score=76.87 Aligned_cols=93 Identities=22% Similarity=0.279 Sum_probs=65.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (551)
.+++|||||+.|+..|..|++.|.+|+||++..+ +| ..+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~---------l~------------------------------~~d-- 309 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL---------FF------------------------------RED-- 309 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc---------cc------------------------------ccC--
Confidence 5899999999999999999999999999987321 00 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee--CCc--EEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~~--~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...++..||+++.+... .+ +.. .+.+++ .++.+|.||+|+|..|+..
T Consensus 310 ----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 310 ----------PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGH-GELRADKLLVATGRAPNTR 368 (561)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecC-CeEEeCEEEEccCCCcCCC
Confidence 123334455667789999987532 22 122 233334 3699999999999998764
No 298
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.72 E-value=0.00026 Score=74.80 Aligned_cols=93 Identities=24% Similarity=0.261 Sum_probs=62.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+++|||||+.|+..|..|++.|.+|+||++. .+.. .++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~---------------------------------------~~d- 209 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR---------------------------------------HLD- 209 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc---------------------------------------ccC-
Confidence 58999999999999999999999999999973 2110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe--CC--cEEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~--~~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+ +.+++++.+.. ..+ +. ..+.+.+++++.+|.|++|+|.+|+..
T Consensus 210 -----------~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 210 -----------EDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred -----------HHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 11111122222 35788887643 222 12 234455667899999999999998754
No 299
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=3.3e-05 Score=79.47 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=37.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNR 142 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~ 142 (551)
+|+|+|||.|||+||.+|+++|++|+|+|. +.+||.|..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence 799999999999999999999999999999 8899987643
No 300
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.71 E-value=0.00016 Score=81.69 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=68.8
Q ss_pred ceEEEECCChhHHHHHHHHHhC----CCeEEEEcccCcCC------CC-C----CHHHHHHHHHHHhCCCceEEEeceEE
Q 008850 270 DWIAIVGSGYIGLEFSDVYTAL----GSEVTFIEALDQLM------PG-F----DPEIGKLAQRVLINPRKIDYHTGVFA 334 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~l------~~-~----~~~~~~~~~~~l~~~~gi~~~~~~~~ 334 (551)
++|+|||+|+.|+.+|..|.+. +.+||++.+.+++. +. + ..++.....+.+++ .||+++.+..+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~-~gI~~~~g~~V 82 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEK-HGIKVLVGERA 82 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHh-CCCEEEcCCEE
Confidence 5899999999999999999765 47899998877642 10 1 11111122344554 79999999876
Q ss_pred E-eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCC
Q 008850 335 T-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNG 374 (551)
Q Consensus 335 ~-~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~ 374 (551)
. .+.+...|.+.++ ..+.+|.+|+|||..|....
T Consensus 83 ~~Id~~~~~V~~~~G------~~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 83 ITINRQEKVIHSSAG------RTVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred EEEeCCCcEEEECCC------cEEECCEEEECCCCCcCCCC
Confidence 6 4433445555554 57999999999999987553
No 301
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.71 E-value=0.00032 Score=73.99 Aligned_cols=93 Identities=25% Similarity=0.333 Sum_probs=64.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||+|+.|+..|..|++.|.+|+||++. .+. |. .+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~~------------------------------~~- 198 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL---------PR------------------------------ED- 198 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC---------CC------------------------------cC-
Confidence 48999999999999999999999999999983 211 10 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceE-EEe--CCc--EEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~--~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+++.||+++.+.. ..+ +.. .+..++ .++.+|.||+|+|..|+..
T Consensus 199 -----------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~-g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 199 -----------RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEH-AQLAVDALLIASGRQPATA 257 (441)
T ss_pred -----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcC-CeEEeCEEEEeecCCcCCC
Confidence 12223345566778999998753 222 122 233333 3589999999999998754
No 302
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.70 E-value=3.7e-05 Score=81.47 Aligned_cols=38 Identities=32% Similarity=0.563 Sum_probs=35.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
+|+|||||++||+||..|.+.|++|+|+|+ +.+||.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Confidence 589999999999999999999999999999 88999765
No 303
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.70 E-value=0.00067 Score=71.17 Aligned_cols=40 Identities=40% Similarity=0.725 Sum_probs=35.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCcc-Cccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV-GGTC 139 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~-GG~~ 139 (551)
..+||+|||||..|+.+|..++.+|++|+|+|+..+ .||.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 569999999999999999999999999999999554 4543
No 304
>PTZ00058 glutathione reductase; Provisional
Probab=97.70 E-value=0.00034 Score=75.34 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=64.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeCC-ccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+..|..+++.|.+|+|+++. .+. | .++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il---------~------------------------------~~d- 277 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL---------R------------------------------KFD- 277 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc---------c------------------------------cCC-
Confidence 58999999999999999999999999999983 211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-EeC---C--cEEEe-CcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILG---P--QKVKF-GTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~---~--~~v~~-~~g~~i~~d~lVlAtG~~p~~p 246 (551)
+++...+...+++.||+++.+... .+. . ..+.. ++++++.+|.|++|+|..|...
T Consensus 278 -----------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 278 -----------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 223333445667789999887632 221 1 12233 3345799999999999888744
No 305
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.69 E-value=0.00037 Score=73.94 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=63.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||+|+.|+..|..|++.|.+|+++++ +.+... ++
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~---------------------------------------~d- 209 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL---------------------------------------ED- 209 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc---------------------------------------hh-
Confidence 5899999999999999999999999999998 321110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee--CCc-EEEe----CcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ-KVKF----GTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~~-~v~~----~~g~~i~~d~lVlAtG~~p~~p 246 (551)
.++...+...+++. |+++.+... .+ +.. .+.+ +++.++.+|.||+|+|..|+..
T Consensus 210 -----------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 210 -----------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred -----------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 22333344455666 888776432 22 111 3332 2345799999999999998865
No 306
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.69 E-value=4.7e-05 Score=81.69 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=45.5
Q ss_pred CCCceeeCCCCccccCCCCCCCcEEEecCCCCC-----C----CcHHHHHHHHHHHHHHHcCC
Q 008850 385 QRGFVPVDERMRVIDANGNLVPHLYCIGDANGK-----M----MLAHAASAQGISVVEQVTGR 438 (551)
Q Consensus 385 ~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~-----~----~~~~~A~~~g~~aa~~i~g~ 438 (551)
..|.+.+|+++|+.+..|..+||+||+|.+++. + .....|+-.|++|+++++++
T Consensus 449 T~GGl~in~~~qVl~~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~~ 511 (513)
T PRK12837 449 TKGGLRTDTAARVLDTDGRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAGR 511 (513)
T ss_pred eCCCceECCCceEECCCCCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhcC
Confidence 567799999999999999999999999999643 1 12567889999999999875
No 307
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.69 E-value=0.00069 Score=65.45 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=93.7
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC----------C----------------------------CCH
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP----------G----------------------------FDP 310 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------~----------------------------~~~ 310 (551)
.-.|+|||+|+.|+-.|..|++.|.+|.++++.+.+.. . ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 45799999999999999999999999999998764310 0 001
Q ss_pred HHHHHHHHHHhCCCceEEEeceEEE----eCC--CcEEEEEecccC-----CCCCeEEecCEEEEeecCCCCCC-CCCCc
Q 008850 311 EIGKLAQRVLINPRKIDYHTGVFAT----KDG--KPVTIELIDAKT-----KEPKDTLEVDAALIATGRAPFTN-GLGLE 378 (551)
Q Consensus 311 ~~~~~~~~~l~~~~gi~~~~~~~~~----~~~--~~~~v~~~~g~~-----~~~~~~i~~D~vi~a~G~~p~~~-~l~l~ 378 (551)
++.+.+.+...+ .|++++.++.+. .++ ....+.+..... ..+...+.++.||.|+|...... .+ .+
T Consensus 101 el~~~L~~~a~e-~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l-~~ 178 (254)
T TIGR00292 101 EFISTLASKALQ-AGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC-AK 178 (254)
T ss_pred HHHHHHHHHHHH-cCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH-HH
Confidence 233334444444 789999888766 233 233444422100 01235799999999999654321 11 01
Q ss_pred cccccc------CCCceeeC--CCCccccCCCCCCCcEEEecCCC----CCCCc---HHHHHHHHHHHHHHHcC
Q 008850 379 NINVVT------QRGFVPVD--ERMRVIDANGNLVPHLYCIGDAN----GKMML---AHAASAQGISVVEQVTG 437 (551)
Q Consensus 379 ~~~l~~------~~G~i~Vd--~~~~~~~~~~t~~~~IyA~GD~~----~~~~~---~~~A~~~g~~aa~~i~g 437 (551)
..++.. ..+...++ |.+ +.++-+.-+||+|++|=.+ +.|+. ...-...|+.||+.|+.
T Consensus 179 ~~~~~~~~~~~~g~~~~~~~~~e~~-~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 179 KIVLEDQVPKLGGEKSMWAEVAEVA-IHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred HcCcccCCcccCCchhhhhhhhHHH-HHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 111100 00011111 111 1111114589999999764 33432 22234678888887753
No 308
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.68 E-value=0.00033 Score=74.46 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
.+++|||||+.|+.+|..+++.|.+|+|||+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~ 205 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM 205 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence 5899999999999999999999999999998
No 309
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.66 E-value=0.00013 Score=77.35 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=68.2
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------C--CCCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------P--GFDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. + .++.++.+...+.+++ .||+++.++.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~v~~-- 216 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTA-MGIEFHLNCEVGR-- 216 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHH-CCCEEECCCEeCC--
Confidence 46899999999999999999999999999999887542 2 2455666656666776 8999998876521
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCCCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 372 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 372 (551)
.+.+.+ ....+|.||+|+|..+..
T Consensus 217 ---~~~~~~-------~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 217 ---DISLDD-------LLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred ---ccCHHH-------HHhcCCEEEEEeCCCCCC
Confidence 111111 124699999999997753
No 310
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.64 E-value=4.6e-05 Score=80.92 Aligned_cols=40 Identities=20% Similarity=0.435 Sum_probs=35.7
Q ss_pred ccEEEECCChHHHHHHHHHHHc------CCcEEEeeC-CccCccccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEK------GLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~------g~~V~liE~-~~~GG~~~~ 141 (551)
.+|+|||||++||+||..|.+. |++|+|+|+ +++||.+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 4799999999999999999986 379999999 889998763
No 311
>PLN02676 polyamine oxidase
Probab=97.64 E-value=5.6e-05 Score=80.33 Aligned_cols=42 Identities=36% Similarity=0.544 Sum_probs=37.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCC-cEEEeeC-CccCccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~-~V~liE~-~~~GG~~~~ 141 (551)
..+||+|||||++||+||.+|++.|. +|+|+|+ +.+||.+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 35799999999999999999999998 6999999 889998763
No 312
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.63 E-value=0.00038 Score=74.31 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
.+|+|||+|.+|+++|..|+++|++|+++|+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~ 47 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDD 47 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4799999999999999999999999999996
No 313
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.63 E-value=0.00018 Score=75.72 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=63.7
Q ss_pred CCceEEEECCChhHHHHHHHHHh--CCCeEEEEcccCcCCCC--------C--CHHHHHHHHHHHhCCCceEEEeceEEE
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTA--LGSEVTFIEALDQLMPG--------F--DPEIGKLAQRVLINPRKIDYHTGVFAT 335 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~--------~--~~~~~~~~~~~l~~~~gi~~~~~~~~~ 335 (551)
.+++|+|||+|+.|+..|..|++ .|.+|+++++.+.+... . ...+.....+.+.+ .+|+++.+..+-
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~-~~v~~~~nv~vg 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATD-DRVSFFGNVTLG 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHH-CCeEEEcCEEEC
Confidence 46899999999999999999987 79999999998865421 1 11222334455554 789988876542
Q ss_pred eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 336 KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 336 ~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
. .+++.+. ...+|.||+|+|..+.
T Consensus 104 ---~--dvtl~~L-------~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 104 ---R--DVSLSEL-------RDLYHVVVLAYGAESD 127 (491)
T ss_pred ---c--cccHHHH-------hhhCCEEEEecCCCCC
Confidence 1 1233221 2469999999998763
No 314
>PLN02529 lysine-specific histone demethylase 1
Probab=97.63 E-value=6.4e-05 Score=82.68 Aligned_cols=41 Identities=34% Similarity=0.591 Sum_probs=37.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
..+||+|||||++||+||..|+++|++|+|+|+ +.+||.+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 457999999999999999999999999999999 78888765
No 315
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.62 E-value=6.2e-05 Score=76.12 Aligned_cols=42 Identities=38% Similarity=0.623 Sum_probs=38.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~ 141 (551)
...||||||+|.+||.+|.+|.+.|++|+|+|. +.+||.|..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 347999999999999999999999999999998 899998863
No 316
>PLN02546 glutathione reductase
Probab=97.61 E-value=0.00045 Score=74.44 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
.+|+|||||+.|+..|..|.+.|.+|+||++ +.+... ++
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~---------------------------------------~d- 292 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG---------------------------------------FD- 292 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc---------------------------------------cC-
Confidence 5899999999999999999999999999997 321100 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-Ee---CCc--EEEeCcceEEEeCeEEEeCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~~~--~v~~~~g~~i~~d~lVlAtG~~p~~p 246 (551)
+.+...+...+++.||+++.+... .+ +.. .+..+++....+|.||+|+|..|+..
T Consensus 293 -----------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 293 -----------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred -----------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 233344555667789999887532 22 122 23334444455899999999998754
No 317
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.59 E-value=0.00051 Score=69.34 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=53.8
Q ss_pred HHhCCCeEEEEc-ccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEE----eCCCcEEEEEecccCCCCCeEEecCEE
Q 008850 288 YTALGSEVTFIE-ALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT----KDGKPVTIELIDAKTKEPKDTLEVDAA 362 (551)
Q Consensus 288 l~~~g~~Vtlv~-~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~----~~~~~~~v~~~~g~~~~~~~~i~~D~v 362 (551)
+...|....++. +.+++-...-+++.+-+.+.+++ .|+++++++.+. .++....+.+++| .++++|.|
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~-~G~ei~f~t~VeDi~~~~~~~~~v~~~~g------~~i~~~~v 222 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLES-LGGEIRFNTEVEDIEIEDNEVLGVKLTKG------EEIEADYV 222 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHh-cCcEEEeeeEEEEEEecCCceEEEEccCC------cEEecCEE
Confidence 344455544443 23344443456778888888887 899999999986 3334456776665 79999999
Q ss_pred EEeecCCCCC
Q 008850 363 LIATGRAPFT 372 (551)
Q Consensus 363 i~a~G~~p~~ 372 (551)
|+|+|+....
T Consensus 223 vlA~Grsg~d 232 (486)
T COG2509 223 VLAPGRSGRD 232 (486)
T ss_pred EEccCcchHH
Confidence 9999976543
No 318
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.58 E-value=6.8e-05 Score=78.23 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=38.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
+..|||||||+|.+|+.+|..|++.|++|+++|+ +..||.+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 4569999999999999999999999999999999 78899876
No 319
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.58 E-value=0.00022 Score=73.62 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=55.9
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC------------------------C--------------CC---
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP------------------------G--------------FD--- 309 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------~--------------~~--- 309 (551)
+|+|||+|++|+-.|..+++.|.+|.++++++++.. . |+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 589999999999999999999999999998755321 0 00
Q ss_pred ---------------------------HHHHHHHHHHHhCCCceEEEeceEEE---e-CCCcEEEEEecccCCCCCeEEe
Q 008850 310 ---------------------------PEIGKLAQRVLINPRKIDYHTGVFAT---K-DGKPVTIELIDAKTKEPKDTLE 358 (551)
Q Consensus 310 ---------------------------~~~~~~~~~~l~~~~gi~~~~~~~~~---~-~~~~~~v~~~~g~~~~~~~~i~ 358 (551)
.++.+.+.+.+++ .||++++++.+. . ++....|++.+. ..+.
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~-~gv~i~~~~~V~~i~~~~~~~f~v~~~~~------~~~~ 154 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKR-LGVEIHFNTRVKSIEKKEDGVFGVKTKNG------GEYE 154 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHH-HT-EEE-S--EEEEEEETTEEEEEEETTT------EEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHH-cCCEEEeCCEeeeeeecCCceeEeeccCc------cccc
Confidence 1233444555555 789999999887 3 333366766332 6899
Q ss_pred cCEEEEeecCCC
Q 008850 359 VDAALIATGRAP 370 (551)
Q Consensus 359 ~D~vi~a~G~~p 370 (551)
+|.||+|+|-..
T Consensus 155 a~~vILAtGG~S 166 (409)
T PF03486_consen 155 ADAVILATGGKS 166 (409)
T ss_dssp ESEEEE----SS
T ss_pred CCEEEEecCCCC
Confidence 999999999654
No 320
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0018 Score=71.48 Aligned_cols=203 Identities=21% Similarity=0.197 Sum_probs=112.9
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------CC--CCHHHHHHHHHHHhCCCceEEEeceEEEeCCC
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKDGK 339 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~~ 339 (551)
+++|+|||+|+.|+-.|..|.+.|+.|++++|.+++. |. +|.-+.+.-.+.+.+ .||++++++.+- +
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~-egi~f~tn~eig---k 1860 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQ-EGIRFVTNTEIG---K 1860 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHh-hCceEEeecccc---c
Confidence 6899999999999999999999999999999999863 22 566666666667776 899999997653 1
Q ss_pred cEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCCCcc---cccccCCCce------eeCCCCccccCCCCCCCcEEE
Q 008850 340 PVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLEN---INVVTQRGFV------PVDERMRVIDANGNLVPHLYC 410 (551)
Q Consensus 340 ~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~---~~l~~~~G~i------~Vd~~~~~~~~~~t~~~~IyA 410 (551)
. +.+.. -.-+.|.|++|+|..-..+ |.++. .|+.+..-++ ..|..+.- ++-...-+.|..
T Consensus 1861 ~--vs~d~-------l~~~~daiv~a~gst~prd-lpv~grd~kgv~fame~l~~ntk~lld~~~d~-~~~~~~gkkviv 1929 (2142)
T KOG0399|consen 1861 H--VSLDE-------LKKENDAIVLATGSTTPRD-LPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDG-NYISAKGKKVIV 1929 (2142)
T ss_pred c--ccHHH-------HhhccCeEEEEeCCCCCcC-CCCCCccccccHHHHHHHHHhHHhhhcccccc-ceeccCCCeEEE
Confidence 1 22211 2346799999999753333 11111 1221110011 11221100 000022345666
Q ss_pred ecCCCCCCCcHHHHHHHHHHHHHHH--cCCCccCCCCCcceEEEcCCCeeEecCCHHHHHhhchhcCCeEEEEEEecccc
Q 008850 411 IGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKAN 488 (551)
Q Consensus 411 ~GD~~~~~~~~~~A~~~g~~aa~~i--~g~~~~~~~~~~p~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~ 488 (551)
+|---.+.....++++.|..-..|+ +-.+.+-.-..-||-- -|-+-.|-+..+|+++.|++.--+|.+....|-..
T Consensus 1930 igggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpq--wprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~ 2007 (2142)
T KOG0399|consen 1930 IGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQ--WPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGD 2007 (2142)
T ss_pred ECCCCccccccccchhhccceecceeecCCCCcccCCCCCCcc--CceEEEeecchHHHHHHhCCCcceeeeeeeeeecc
Confidence 6532111122334455554433333 2222111111222211 15677888999999998765555555544444433
No 321
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.56 E-value=8.1e-05 Score=80.93 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=45.2
Q ss_pred CCCceeeCCCCccccCCCCCCCcEEEecCCCCC-----C---C-cHHHHHHHHHHHHHHHcCC
Q 008850 385 QRGFVPVDERMRVIDANGNLVPHLYCIGDANGK-----M---M-LAHAASAQGISVVEQVTGR 438 (551)
Q Consensus 385 ~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~-----~---~-~~~~A~~~g~~aa~~i~g~ 438 (551)
..|.+.+|+++|+.+..|+.+||+||+|.+++. + . ....|+-.|++|++++++.
T Consensus 507 T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~ 569 (584)
T PRK12835 507 TSGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAV 569 (584)
T ss_pred cCcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence 567799999999999999999999999999743 1 1 2466889999999999865
No 322
>PRK12831 putative oxidoreductase; Provisional
Probab=97.56 E-value=0.00023 Score=75.26 Aligned_cols=95 Identities=25% Similarity=0.316 Sum_probs=66.1
Q ss_pred cCCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------CC--CCHH-HHHHHHHHHhCCCceEEEeceEEEe
Q 008850 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPE-IGKLAQRVLINPRKIDYHTGVFATK 336 (551)
Q Consensus 267 ~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~-~~~~~~~~l~~~~gi~~~~~~~~~~ 336 (551)
..+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. +. ++.+ +.....+.+++ .||++++++.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~-~gv~i~~~~~v~- 215 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK-LGVKIETNVVVG- 215 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH-cCCEEEcCCEEC-
Confidence 346899999999999999999999999999999866431 11 2222 44444566665 799999987542
Q ss_pred CCCcEEEEEecccCCCCCeEEecCEEEEeecC-CCCC
Q 008850 337 DGKPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 372 (551)
Q Consensus 337 ~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 372 (551)
. .+.+.+. ...+.+|.|++|+|. .|..
T Consensus 216 --~--~v~~~~~-----~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 216 --K--TVTIDEL-----LEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --C--cCCHHHH-----HhccCCCEEEEeCCCCCCCC
Confidence 1 1222221 123569999999997 5654
No 323
>PRK07236 hypothetical protein; Provisional
Probab=97.55 E-value=0.00042 Score=71.76 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=67.9
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC------CCHHHHHHHHHH-----------------------
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG------FDPEIGKLAQRV----------------------- 319 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~~~~~~----------------------- 319 (551)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+..... +.+...+.+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 478999999999999999999999999999988643321 233333333221
Q ss_pred --------------------HhC-CCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCC
Q 008850 320 --------------------LIN-PRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 372 (551)
Q Consensus 320 --------------------l~~-~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 372 (551)
+.+ -.+++++.+..++ .+++.+.+++.++ +++.+|.||.|-|.....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g------~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADG------RRETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCC------CEEEeCEEEECCCCCchH
Confidence 100 0124567777665 3455567777665 579999999999976654
No 324
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.55 E-value=8.9e-05 Score=76.72 Aligned_cols=37 Identities=32% Similarity=0.607 Sum_probs=33.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVG 136 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~G 136 (551)
.++||+|||||.+|+++|.+|++.|.+|+++|+...+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 4589999999999999999999999999999996553
No 325
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.54 E-value=9.8e-05 Score=79.79 Aligned_cols=36 Identities=33% Similarity=0.586 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCcc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~ 135 (551)
..+||+|||||..|+++|..|+++|++|+|||++.+
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 358999999999999999999999999999999654
No 326
>PRK10262 thioredoxin reductase; Provisional
Probab=97.54 E-value=0.0011 Score=66.89 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=63.6
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccC---cC--------CCC----C-CHHHHHHHHHHHhCCCceEEEec
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD---QL--------MPG----F-DPEIGKLAQRVLINPRKIDYHTG 331 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~---~~--------l~~----~-~~~~~~~~~~~l~~~~gi~~~~~ 331 (551)
..++|+|||+|+.|+..|..+.++|.++++++..+ .+ ++. + .+++.+.+.+.... .++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATK-FETEIIFD 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHH-CCCEEEee
Confidence 35789999999999999999999999999886431 11 011 1 22345555565554 66666665
Q ss_pred eE--EEeCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCC
Q 008850 332 VF--ATKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 373 (551)
Q Consensus 332 ~~--~~~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 373 (551)
.. +...++...++... ..+.+|.||+|+|..|+..
T Consensus 84 ~v~~v~~~~~~~~v~~~~-------~~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 84 HINKVDLQNRPFRLTGDS-------GEYTCDALIIATGASARYL 120 (321)
T ss_pred EEEEEEecCCeEEEEecC-------CEEEECEEEECCCCCCCCC
Confidence 32 11333333333211 3689999999999998654
No 327
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.53 E-value=8.7e-05 Score=76.58 Aligned_cols=38 Identities=34% Similarity=0.606 Sum_probs=35.5
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CcEEEeeC-CccCcccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g--~~V~liE~-~~~GG~~~ 140 (551)
+|+|||||.+||+||.+|++.+ .+++|+|+ +++||...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 6999999999999999999999 99999999 79999754
No 328
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.53 E-value=0.00065 Score=65.73 Aligned_cols=44 Identities=36% Similarity=0.711 Sum_probs=37.0
Q ss_pred CCcccEEEECCChHHHHHHHHHHHc----CCcEEEeeCCc----------cCcccccC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEK----GLKTAIIEGDV----------VGGTCVNR 142 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~----g~~V~liE~~~----------~GG~~~~~ 142 (551)
..+.||+|||||-.|.+.|..|+++ |++|+|+|++. +||.|...
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF 141 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF 141 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec
Confidence 3578999999999999999999864 79999999943 68888643
No 329
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.51 E-value=0.0003 Score=79.13 Aligned_cols=93 Identities=27% Similarity=0.382 Sum_probs=66.8
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------C--CCCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------P--GFDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. | .++.++.+...+.+++ .||+++.++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~-~gv~~~~~~~v~--- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKK-LGVKFETDVIVG--- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHH-CCCEEECCCEEC---
Confidence 35799999999999999999999999999999865431 2 1345555555556665 799999886542
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecC-CCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 372 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 372 (551)
. .+++.+. ....+|.|++|+|. .|..
T Consensus 506 ~--~v~~~~l------~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 K--TITIEEL------EEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred C--cCCHHHH------hhcCCCEEEEeCCCCCCCC
Confidence 1 1223221 34569999999997 4654
No 330
>PLN02985 squalene monooxygenase
Probab=97.49 E-value=0.00011 Score=78.65 Aligned_cols=35 Identities=40% Similarity=0.619 Sum_probs=32.4
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
...+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 44589999999999999999999999999999983
No 331
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.49 E-value=0.00036 Score=77.94 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=32.5
Q ss_pred cCCceEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 267 ~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
..+|+|+|||+|+.|+.+|..|++.|.+||++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 35799999999999999999999999999999975
No 332
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.48 E-value=0.00096 Score=65.99 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=67.7
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC---------------------------------------C----
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP---------------------------------------G---- 307 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~---- 307 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 489999999999999999999999999998753210 0
Q ss_pred ------C-CHHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 308 ------F-DPEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 308 ------~-~~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
+ ..++.+.+.+.+++ .|++++.+..++ .+++.+.+.+.++ ..++.+|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~-~gv~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQE-AGAELRLGTTVLDVEIHDDRVVVIVRGG-----EGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHH-cCCEEEeCcEEeeEEEeCCEEEEEEcCc-----cEEEEeCEEEECCCcchH
Confidence 0 11234455555555 789999888776 3444445554332 257999999999997643
No 333
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.47 E-value=0.00017 Score=76.37 Aligned_cols=40 Identities=33% Similarity=0.521 Sum_probs=35.9
Q ss_pred cccEEEECCChHHHHHHHHHHHc----CCcEEEeeC-CccCcccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEK----GLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~----g~~V~liE~-~~~GG~~~ 140 (551)
+.+++|||||.|||+||..|.+. |.+|+|+|+ +.+||.+.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 36899999999999999999995 689999999 78899864
No 334
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.46 E-value=0.00017 Score=76.22 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=38.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHc--CCcEEEeeC-CccC----cccccCCc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVG----GTCVNRGC 144 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~-~~~G----G~~~~~g~ 144 (551)
...+||||||||.+|+++|..|++. +.+|+|+|| +.+| |.|+|.|.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt 56 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGT 56 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCc
Confidence 3457999999999999999999998 899999999 7665 45666554
No 335
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.46 E-value=0.00014 Score=73.67 Aligned_cols=41 Identities=37% Similarity=0.628 Sum_probs=36.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCC-cEEEeeC-CccCcccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEG-DVVGGTCV 140 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~-~V~liE~-~~~GG~~~ 140 (551)
...+|||||||.|||+||.+|.+.|. +++|+|. +++||+..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 34589999999999999999998764 7999999 89999865
No 336
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.45 E-value=0.00032 Score=80.72 Aligned_cols=93 Identities=25% Similarity=0.299 Sum_probs=66.7
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------CC--CCHHHHHHHHHHHhCCCceEEEeceEEEeCCC
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKDGK 339 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~~ 339 (551)
+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. |. ++.++.+...+.+++ .||+++++..+. .
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~-~Gv~~~~~~~vg---~ 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVD-IGVKIETNKVIG---K 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHH-CCCEEEeCCccC---C
Confidence 4799999999999999999999999999999876542 21 355666666667776 899999886431 1
Q ss_pred cEEEEEecccCCCCCeEEecCEEEEeecCC-CCC
Q 008850 340 PVTIELIDAKTKEPKDTLEVDAALIATGRA-PFT 372 (551)
Q Consensus 340 ~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~-p~~ 372 (551)
.+++.+. .....+|.||+|||.. |..
T Consensus 506 --~~~~~~l-----~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 506 --TFTVPQL-----MNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred --ccCHHHH-----hhccCCCEEEEecCCCCCCC
Confidence 1222111 0124589999999984 543
No 337
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.45 E-value=0.00045 Score=73.52 Aligned_cols=91 Identities=30% Similarity=0.344 Sum_probs=67.0
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------CC--CCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+.|++.|..|++.|.+|+++++.+++. +. ++.++.....+.+++ .||+++.++.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~v~~-- 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSA-EGIDFVTNTEIGV-- 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHh-CCCEEECCCEeCC--
Confidence 35799999999999999999999999999999887642 22 355565555566766 8999999876531
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCC-CC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRA-PF 371 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~-p~ 371 (551)
.+.. + .....+|.|++|+|.. |.
T Consensus 219 ---~~~~-~------~~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 219 ---DISA-D------ELKEQFDAVVLAGGATKPR 242 (485)
T ss_pred ---ccCH-H------HHHhhCCEEEEccCCCCCC
Confidence 0111 0 1235789999999987 44
No 338
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.44 E-value=0.00043 Score=73.86 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=62.1
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEEeCCCcEEEEEec
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKDGKPVTIELID 347 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~v~~~~ 347 (551)
.+++++|||+|.+|+++|..|.+.|.+|+++++.+. +....+.+.+++ .||+++.+....
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~-~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEA-LGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHH-cCCEEEECCCcc------------
Confidence 468999999999999999999999999999987642 233444555665 789888764210
Q ss_pred ccCCCCCeEEecCEEEEeecCCCCCCCC
Q 008850 348 AKTKEPKDTLEVDAALIATGRAPFTNGL 375 (551)
Q Consensus 348 g~~~~~~~~i~~D~vi~a~G~~p~~~~l 375 (551)
....+|.||+++|..|+.+.+
T Consensus 75 -------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 -------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred -------ccCCCCEEEECCCcCCCCHHH
Confidence 124589999999999998743
No 339
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.44 E-value=0.0014 Score=66.58 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=62.8
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEc-ccCcCCCC------------------------------------------
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIE-ALDQLMPG------------------------------------------ 307 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~-~~~~~l~~------------------------------------------ 307 (551)
.|+|||||..|+|.|..+++.|.+|.++. ..+.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999999983 33322110
Q ss_pred -----------CC-HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecC
Q 008850 308 -----------FD-PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 368 (551)
Q Consensus 308 -----------~~-~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 368 (551)
.| ..+...+++.+++..+++++...... .+++...|.+.+| +.+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g------~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG------EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS------EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC------CEEecCEEEEeccc
Confidence 11 12455666777766789998664333 4555666777665 78999999999997
No 340
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.44 E-value=0.00017 Score=78.47 Aligned_cols=36 Identities=33% Similarity=0.534 Sum_probs=33.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
.....+|+|||||++|+++|+.|++.|++|+|||+.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~ 113 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD 113 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 345689999999999999999999999999999993
No 341
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.44 E-value=0.00014 Score=77.26 Aligned_cols=38 Identities=32% Similarity=0.596 Sum_probs=35.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
+|+|||||.+|+++|..|.+.|++|+|+|+ +.+||.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceee
Confidence 589999999999999999999999999999 78898764
No 342
>PLN02487 zeta-carotene desaturase
Probab=97.44 E-value=0.00023 Score=76.54 Aligned_cols=40 Identities=30% Similarity=0.576 Sum_probs=36.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
..+|+|||||++||++|..|.+.|++|+|+|+ +.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 46999999999999999999999999999999 77888653
No 343
>PRK07538 hypothetical protein; Provisional
Probab=97.44 E-value=0.00012 Score=76.47 Aligned_cols=31 Identities=29% Similarity=0.646 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
||+|||||++|+++|..|++.|++|+|||+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~ 32 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAA 32 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcC
Confidence 8999999999999999999999999999993
No 344
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.43 E-value=0.00015 Score=79.36 Aligned_cols=36 Identities=31% Similarity=0.650 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCcc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~ 135 (551)
..+||||||||..|+++|..|+++|++|+|||+..+
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 348999999999999999999999999999999554
No 345
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.43 E-value=0.00046 Score=78.33 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=62.6
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------CC--CCHHHHHHHHHHHhCCCceEEEeceEEEeCCC
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKDGK 339 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~~ 339 (551)
+++|+|||||+.|+..|..|++.|.+|+++++.+.+. |. ++.+..+...+.+.+ .||+++.+...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~-~GVe~~~g~~~----- 610 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKF-HGVEFKYGCSP----- 610 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHh-cCcEEEEeccc-----
Confidence 4789999999999999999999999999999876432 21 233444444455555 79999887421
Q ss_pred cEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 340 PVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 340 ~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
.+++.+. ....+|.|++|||..+.
T Consensus 611 --d~~ve~l------~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 611 --DLTVAEL------KNQGYKYVILAIGAWKH 634 (1012)
T ss_pred --ceEhhhh------hcccccEEEECCCCCCC
Confidence 1222221 34568999999998754
No 346
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.43 E-value=0.00017 Score=79.91 Aligned_cols=41 Identities=29% Similarity=0.523 Sum_probs=37.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
...+|+|||||++|++||..|.+.|++|+|+|+ +.+||.+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 457999999999999999999999999999999 78888754
No 347
>PTZ00367 squalene epoxidase; Provisional
Probab=97.42 E-value=0.00015 Score=78.16 Aligned_cols=34 Identities=35% Similarity=0.650 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~ 65 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERD 65 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccc
Confidence 3589999999999999999999999999999984
No 348
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.42 E-value=0.0013 Score=71.32 Aligned_cols=94 Identities=24% Similarity=0.244 Sum_probs=65.9
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC------------CCC----CHHHHHHHHHHHhCCCceEEEeceE
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM------------PGF----DPEIGKLAQRVLINPRKIDYHTGVF 333 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------~~~----~~~~~~~~~~~l~~~~gi~~~~~~~ 333 (551)
-.|+|||||+.|+..|..+++.|.+|+++++.. +. +.+ ..++.+.+.+.+++ .|++++.. .
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~-~gv~~~~~-~ 81 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQD-FGVKFLQA-E 81 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHH-cCCEEecc-E
Confidence 369999999999999999999999999999753 21 111 13455666666665 78988644 3
Q ss_pred EE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCC
Q 008850 334 AT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 373 (551)
Q Consensus 334 ~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 373 (551)
+. .+++...++..+ ..+.+|.+|+|||..|...
T Consensus 82 V~~i~~~~~~~~V~~~~-------g~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 82 VLDVDFDGDIKTIKTAR-------GDYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEEecCCEEEEEecC-------CEEEEeEEEECCCCccCCC
Confidence 33 233333444433 2578999999999988764
No 349
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.41 E-value=0.00016 Score=79.41 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=31.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHHc-CCcEEEeeC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG 132 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~-g~~V~liE~ 132 (551)
...+||+||||||+||++|..|++. |++|+|||+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~ 64 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER 64 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence 4468999999999999999999995 999999998
No 350
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.41 E-value=0.00036 Score=76.97 Aligned_cols=91 Identities=23% Similarity=0.377 Sum_probs=67.6
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------C--CCCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------P--GFDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. + .++.++.+...+.+++ .||+++.+..+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~-~Gv~~~~~~~v~~-- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTA-MGIDFHLNCEIGR-- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHH-CCeEEEcCCccCC--
Confidence 36899999999999999999999999999999887642 1 2466666655566665 8999998875421
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
.+.+.+ ....+|.|++|+|..+.
T Consensus 386 ---~~~~~~-------l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 ---DITFSD-------LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred ---cCCHHH-------HHhcCCEEEEeCCCCCC
Confidence 112211 23468999999998653
No 351
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.39 E-value=0.00017 Score=73.83 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
.||+|||||++|+.+|..|++.|++|+|||+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~ 33 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEM 33 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 5899999999999999999999999999997
No 352
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.39 E-value=0.0013 Score=72.03 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
.+|+|||||+.|+..|..+.+.|.+|+|||+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~ 343 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEY 343 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4899999999999999999999999999998
No 353
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.38 E-value=0.00065 Score=72.17 Aligned_cols=89 Identities=28% Similarity=0.346 Sum_probs=64.9
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC---------CCCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP---------GFDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+.. .++.+......+.+.+ .||+++.+..+..+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~~- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEA-EGIEFRTNVEVGKD- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHh-CCcEEEeCCEECCc-
Confidence 458999999999999999999999999999998775421 1344555555556665 79999988754311
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRA 369 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 369 (551)
+...+ ....+|.|++|+|..
T Consensus 220 ----~~~~~-------~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 220 ----ITAEE-------LLAEYDAVFLGTGAY 239 (471)
T ss_pred ----CCHHH-------HHhhCCEEEEecCCC
Confidence 11111 234799999999997
No 354
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.36 E-value=0.0007 Score=70.50 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=60.6
Q ss_pred cCCceEEEECCChhHHHHHHHHH-hCCCeEEEEcccCcCCCC-------CCH---HHHHHHHHHHhCCCceEEEeceEEE
Q 008850 267 FVPDWIAIVGSGYIGLEFSDVYT-ALGSEVTFIEALDQLMPG-------FDP---EIGKLAQRVLINPRKIDYHTGVFAT 335 (551)
Q Consensus 267 ~~~k~v~VvG~G~~g~e~A~~l~-~~g~~Vtlv~~~~~~l~~-------~~~---~~~~~~~~~l~~~~gi~~~~~~~~~ 335 (551)
..+++|+|||+|+.|++.|..|. +.|.+|+++++.+.+... ..+ .+...+.+.+.. .+++++.+..+-
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~-~~v~f~gnv~VG 115 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLS-PNYRFFGNVHVG 115 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhh-CCeEEEeeeEec
Confidence 35789999999999999999764 679999999998876421 112 233334444444 678887554332
Q ss_pred eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 336 KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 336 ~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
. .+++.+ ....+|.||+|+|..+.
T Consensus 116 ~-----Dvt~ee-------L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 116 V-----DLKMEE-------LRNHYNCVIFCCGASEV 139 (506)
T ss_pred C-----ccCHHH-------HHhcCCEEEEEcCCCCC
Confidence 1 111111 12378999999998753
No 355
>PRK06834 hypothetical protein; Provisional
Probab=97.35 E-value=0.0025 Score=67.91 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=68.2
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC---CC---CCH---------------------------------
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---PG---FDP--------------------------------- 310 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l---~~---~~~--------------------------------- 310 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++ +.+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 469999999999999999999999999999765321 10 111
Q ss_pred -----------------HHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCC
Q 008850 311 -----------------EIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 370 (551)
Q Consensus 311 -----------------~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 370 (551)
.+.+.+.+.+++ .|++++.++.++ .+++.+.+++.++ .++.+|.||.|.|..+
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~-~gv~i~~~~~v~~v~~~~~~v~v~~~~g------~~i~a~~vVgADG~~S 156 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGE-LGVPIYRGREVTGFAQDDTGVDVELSDG------RTLRAQYLVGCDGGRS 156 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCCeEEEEECCC------CEEEeCEEEEecCCCC
Confidence 111223333443 578888888776 4455566666443 4799999999999887
Q ss_pred CCC
Q 008850 371 FTN 373 (551)
Q Consensus 371 ~~~ 373 (551)
...
T Consensus 157 ~vR 159 (488)
T PRK06834 157 LVR 159 (488)
T ss_pred CcH
Confidence 553
No 356
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.33 E-value=0.00046 Score=76.18 Aligned_cols=91 Identities=23% Similarity=0.261 Sum_probs=65.0
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------CC--CCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. +. +..++.+...+.+++ .|++++.+..+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~-~Gv~i~~~~~v~~-- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRA-MGAEFRFNTVFGR-- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHH-cCCEEEeCCcccC--
Confidence 45899999999999999999999999999999877642 22 344555555555665 7999988864321
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
.+++.+. ...+|.|++|+|..+.
T Consensus 269 ---dv~~~~~-------~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 ---DITLEEL-------QKEFDAVLLAVGAQKA 291 (652)
T ss_pred ---ccCHHHH-------HhhcCEEEEEcCCCCC
Confidence 1222111 2358999999998753
No 357
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.31 E-value=0.0028 Score=62.49 Aligned_cols=139 Identities=17% Similarity=0.284 Sum_probs=88.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (551)
..+++|||||..||..+.--.++|.+|++||- +.+||.. |
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m---------------------------------------D 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM---------------------------------------D 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc---------------------------------------C
Confidence 45899999999999999999999999999997 6666531 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEEe-----C-CcEEEeC-----cceEEEeCeEEEeCCCCCCCCCC
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL-----G-PQKVKFG-----TDNIVTAKDIIIATGSVPFVPKG 248 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~-~~~v~~~-----~g~~i~~d~lVlAtG~~p~~p~~ 248 (551)
.++.......+.+.|+++..++.... + .-.+++. ..+++++|.|++++|-+|+.-+
T Consensus 252 ------------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~G- 318 (506)
T KOG1335|consen 252 ------------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEG- 318 (506)
T ss_pred ------------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccC-
Confidence 23444455566778999998874421 1 2233332 2467999999999999998653
Q ss_pred ccCCCceeecchhhhcc------ccCCceEEEECCChhHHHHHHHHHhCC
Q 008850 249 IEVDGKTVITSDHALKL------EFVPDWIAIVGSGYIGLEFSDVYTALG 292 (551)
Q Consensus 249 ~~~~~~~v~~~~~~~~~------~~~~k~v~VvG~G~~g~e~A~~l~~~g 292 (551)
.+++..++.. +...+. ...--++-.||--.-|..+|....+.|
T Consensus 319 Lgle~iGi~~-D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 319 LGLEKIGIEL-DKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred CChhhccccc-ccccceeccccccccCCceEEecccCCcchhhhhhhhhc
Confidence 2222222211 111111 111235667776666666666555555
No 358
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.31 E-value=0.00059 Score=75.59 Aligned_cols=90 Identities=23% Similarity=0.326 Sum_probs=65.0
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------C--CCCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------P--GFDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. | .++.++.+...+.+++ .||+++.++.+..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~-~Gv~~~~~~~v~~~- 403 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSA-MGIEFELNCEVGKD- 403 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHH-CCeEEECCCEeCCc-
Confidence 46899999999999999999999999999999876532 2 1345555544556665 79999988754211
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRAP 370 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 370 (551)
+.+.+ ....+|.|++|+|..+
T Consensus 404 ----i~~~~-------~~~~~DavilAtGa~~ 424 (654)
T PRK12769 404 ----ISLES-------LLEDYDAVFVGVGTYR 424 (654)
T ss_pred ----CCHHH-------HHhcCCEEEEeCCCCC
Confidence 11111 1246999999999754
No 359
>PLN02612 phytoene desaturase
Probab=97.30 E-value=0.0003 Score=76.28 Aligned_cols=41 Identities=32% Similarity=0.551 Sum_probs=37.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
...+|+|||||++||++|..|.+.|++|+|+|+ +.+||.+.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 347999999999999999999999999999999 77888654
No 360
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.29 E-value=0.00026 Score=75.38 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=35.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
|||+|||+||+|+.+|..|++.|++|+|||+ ...||.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 6999999999999999999999999999999 66666543
No 361
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.27 E-value=0.00022 Score=70.93 Aligned_cols=32 Identities=41% Similarity=0.691 Sum_probs=28.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CcEEEeeCC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKG-LKTAIIEGD 133 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g-~~V~liE~~ 133 (551)
||+||||+|++|..+|.+|++.+ .+|+|+|+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG 33 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAG 33 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcc
Confidence 79999999999999999999987 699999983
No 362
>PLN02661 Putative thiazole synthesis
Probab=97.23 E-value=0.0074 Score=60.39 Aligned_cols=167 Identities=16% Similarity=0.184 Sum_probs=89.7
Q ss_pred CceEEEECCChhHHHHHHHHHhC-CCeEEEEcccCcCCC---------------------------CCCH----------
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTAL-GSEVTFIEALDQLMP---------------------------GFDP---------- 310 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~---------------------------~~~~---------- 310 (551)
.-.|+|||+|..|+-.|..|++. |.+|+++++...+.. .++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 35799999999999999999875 889999987653311 0111
Q ss_pred -HHHHHHH-HHHhCCCceEEEeceEEE----eCCCcEEEEEe------cccCC--CCCeEEecCEEEEeecCCCCCCCCC
Q 008850 311 -EIGKLAQ-RVLINPRKIDYHTGVFAT----KDGKPVTIELI------DAKTK--EPKDTLEVDAALIATGRAPFTNGLG 376 (551)
Q Consensus 311 -~~~~~~~-~~l~~~~gi~~~~~~~~~----~~~~~~~v~~~------~g~~~--~~~~~i~~D~vi~a~G~~p~~~~l~ 376 (551)
++...+. +..++ .||+++.++.+. .++....+.+. ++... .+...+.++.||+|||..+......
T Consensus 172 ~e~~stLi~ka~~~-~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~ 250 (357)
T PLN02661 172 ALFTSTIMSKLLAR-PNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 250 (357)
T ss_pred HHHHHHHHHHHHhc-CCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence 1111222 23333 688888887765 23333344421 11111 1124689999999999655321110
Q ss_pred C---ccccccc---CCCceeeC--CCCccccCCCCCCCcEEEecCCC----CCCCc---HHHHHHHHHHHHHHHcC
Q 008850 377 L---ENINVVT---QRGFVPVD--ERMRVIDANGNLVPHLYCIGDAN----GKMML---AHAASAQGISVVEQVTG 437 (551)
Q Consensus 377 l---~~~~l~~---~~G~i~Vd--~~~~~~~~~~t~~~~IyA~GD~~----~~~~~---~~~A~~~g~~aa~~i~g 437 (551)
. .+.++.. .-....++ |.+ +++.-+.-+||+|++|=.+ +.|+. ...-+..|+.+|+.|+.
T Consensus 251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~-~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 251 VKRLKSIGMIDSVPGMKALDMNAAEDA-IVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred hhcccccCCccCCCCccccchhhHHHH-HHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 1 1111110 00011111 111 1111114589999999764 33432 22334678888888763
No 363
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.23 E-value=0.0015 Score=69.87 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=63.5
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-------------------------------C----------
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------------------------------F---------- 308 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~---------- 308 (551)
|+|+|||+|++|+-.+..|.+.|.+++++++.+.+... |
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 79999999999999999999999999999987643210 1
Q ss_pred -CHHHHHHHHHHHhCCCce--EEEeceEEE---e-CC----CcEEEEEecccCCCCCeEEecCEEEEeecC--CCCCC
Q 008850 309 -DPEIGKLAQRVLINPRKI--DYHTGVFAT---K-DG----KPVTIELIDAKTKEPKDTLEVDAALIATGR--APFTN 373 (551)
Q Consensus 309 -~~~~~~~~~~~l~~~~gi--~~~~~~~~~---~-~~----~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~--~p~~~ 373 (551)
..++.++++...+. .++ .+.+++.|. . ++ ....|+..+ ++..++..+|.|++|+|. .|+.+
T Consensus 82 ~~~~v~~Yl~~Ya~~-f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~---~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 82 SHSEVLEYLESYAEH-FGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN---DGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp BHHHHHHHHHHHHHH-TTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT---TTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CHHHHHHHHHHHHhh-hCCcceEEEccEEeEeeeccccCCCceEEEEeec---CCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 13566777776654 454 466777766 2 21 234555432 222345679999999997 35544
No 364
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.22 E-value=0.0027 Score=65.90 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=32.3
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 57899999999999999999999999999998754
No 365
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.19 E-value=0.0072 Score=62.89 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=84.0
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-------------------------------C---------
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------------------------------F--------- 308 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~--------- 308 (551)
.++|+|||+|++|+-.|..|.+.|.+|++++|.+.+... |
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 589999999999999999999999999999987643210 0
Q ss_pred --C-HHHHHHHHHHHhCCCce--EEEeceEEE---eCC-CcEEEEEecccCCCCCeEEecCEEEEeecCC--CCCCCCCC
Q 008850 309 --D-PEIGKLAQRVLINPRKI--DYHTGVFAT---KDG-KPVTIELIDAKTKEPKDTLEVDAALIATGRA--PFTNGLGL 377 (551)
Q Consensus 309 --~-~~~~~~~~~~l~~~~gi--~~~~~~~~~---~~~-~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~--p~~~~l~l 377 (551)
+ .++-++++...+. .++ .+.+++.+. ... +...|...+.... ..+..+|.|++|+|.- |+...+
T Consensus 86 ~p~~~e~~~YL~~yA~~-F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~--~~~~ifd~VvVctGh~~~P~~P~~-- 160 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKH-FDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ--IEEEIFDAVVVCTGHYVEPRIPQI-- 160 (448)
T ss_pred CCCHHHHHHHHHHHHHh-cChhhheEecccEEEEeeccCCceeEEEecCCcc--eeEEEeeEEEEcccCcCCCCCCcC--
Confidence 0 1344555555543 554 455565443 233 4677777664322 3567899999999986 555533
Q ss_pred ccccccc-CCCceeeCCCCccccCCCCCCCcEEEecCC
Q 008850 378 ENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDA 414 (551)
Q Consensus 378 ~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~ 414 (551)
+..+++. ++..+..-++... +.-....|.++|--
T Consensus 161 ~g~~~~~f~G~~iHS~~Yk~~---e~f~~k~VlVIG~g 195 (448)
T KOG1399|consen 161 PGPGIESFKGKIIHSHDYKSP---EKFRDKVVLVVGCG 195 (448)
T ss_pred CCCchhhcCCcceehhhccCc---ccccCceEEEECCC
Confidence 2222333 3333333333211 01234678888843
No 366
>PLN03000 amine oxidase
Probab=97.19 E-value=0.00042 Score=76.91 Aligned_cols=41 Identities=32% Similarity=0.567 Sum_probs=38.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
...+|+|||||++|+.+|..|.+.|++|+|+|+ +.+||.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 358999999999999999999999999999999 88998876
No 367
>PLN02976 amine oxidase
Probab=97.15 E-value=0.00048 Score=79.23 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=39.0
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCccccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~ 141 (551)
...++|+|||||++|+++|..|.+.|++|+|||+ +.+||.|..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3458999999999999999999999999999998 789998764
No 368
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.14 E-value=0.00071 Score=71.74 Aligned_cols=37 Identities=32% Similarity=0.375 Sum_probs=32.1
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHHcC--CcEEEeeCC
Q 008850 97 PKSFDYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEGD 133 (551)
Q Consensus 97 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g--~~V~liE~~ 133 (551)
+....+||||||||..|+++|.+|++.+ .+|+||||.
T Consensus 41 ~~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~ 79 (497)
T PTZ00383 41 LGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERR 79 (497)
T ss_pred ccCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecC
Confidence 3345699999999999999999999963 699999994
No 369
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.14 E-value=0.0044 Score=62.93 Aligned_cols=100 Identities=27% Similarity=0.355 Sum_probs=65.5
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-----CC------------------------------------
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FD------------------------------------ 309 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~------------------------------------ 309 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+. +.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 5899999999999999999999999999887543220 00
Q ss_pred ----------------------------HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEe
Q 008850 310 ----------------------------PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLE 358 (551)
Q Consensus 310 ----------------------------~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~ 358 (551)
.++.+.+.+.+++ .+++++.++.+. .+.+.+.+.+.+... ++.++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~-g~~~~i~ 160 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEE-RGVDIRFGTRVVSIEQDDDGVTVVVRDGED-GEEETIE 160 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHH-HTEEEEESEEEEEEEEETTEEEEEEEETCT-CEEEEEE
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhh-hhhhheeeeecccccccccccccccccccC-CceeEEE
Confidence 1233344444443 567888887776 444555556554421 2234789
Q ss_pred cCEEEEeecCCCCC
Q 008850 359 VDAALIATGRAPFT 372 (551)
Q Consensus 359 ~D~vi~a~G~~p~~ 372 (551)
+|+||-|-|.....
T Consensus 161 adlvVgADG~~S~v 174 (356)
T PF01494_consen 161 ADLVVGADGAHSKV 174 (356)
T ss_dssp ESEEEE-SGTT-HH
T ss_pred EeeeecccCcccch
Confidence 99999999987654
No 370
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.12 E-value=0.0017 Score=62.78 Aligned_cols=41 Identities=29% Similarity=0.568 Sum_probs=36.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC---CccCcccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG---DVVGGTCV 140 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~---~~~GG~~~ 140 (551)
..+||+|||+|-|||-||.+|+..|.+|+|+|+ ..+||+..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 357999999999999999999999999999997 35788754
No 371
>PLN02463 lycopene beta cyclase
Probab=97.12 E-value=0.0036 Score=65.70 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=64.2
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-CC-C---------------------------------------
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-PG-F--------------------------------------- 308 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~-~--------------------------------------- 308 (551)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+... +. +
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999999765221 10 0
Q ss_pred ---C-HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 309 ---D-PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 309 ---~-~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
+ .++.+.+.+.+.+ .|++++.. .+. .+++...|++.++ .++.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~-~GV~~~~~-~V~~I~~~~~~~~V~~~dG------~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIA-NGVQFHQA-KVKKVVHEESKSLVVCDDG------VKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhh-cCCEEEee-EEEEEEEcCCeEEEEECCC------CEEEcCEEEECcCCCcC
Confidence 0 0111233333343 67888643 333 3445566776654 58999999999998764
No 372
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.11 E-value=0.00055 Score=63.64 Aligned_cols=137 Identities=27% Similarity=0.386 Sum_probs=88.3
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC---CCCCH-------H----HH--H--HHHHHHhCCCceEEEece
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---PGFDP-------E----IG--K--LAQRVLINPRKIDYHTGV 332 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l---~~~~~-------~----~~--~--~~~~~l~~~~gi~~~~~~ 332 (551)
+|+|||+|+.|+.+|..|++.+.+|+++++.+... ..+.. . .. . .+.+.+.. .+++++.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKN-RGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHH-HTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccccccccccccccccccccccccccccc-ceEEEeecc
Confidence 58999999999999999999999999997655210 00000 0 00 0 12222333 678886665
Q ss_pred EEE---eCCCc-----EEEEEecccCCCCCeEEecCEEEEeecCCCCCCCCC----------------------------
Q 008850 333 FAT---KDGKP-----VTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLG---------------------------- 376 (551)
Q Consensus 333 ~~~---~~~~~-----~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~---------------------------- 376 (551)
.+. ...+. ..+.... .++..++.+|.+|+|+|..|+...+.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVE---TGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVA 156 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEE---TTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEE
T ss_pred ccccccccccccccCcccceeec---cCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccc
Confidence 544 22221 1221111 12346899999999999876532111
Q ss_pred ------C-ccccccc-CCCceeeCCCCccccCCCCCCCcEEEecCCCCC
Q 008850 377 ------L-ENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGK 417 (551)
Q Consensus 377 ------l-~~~~l~~-~~G~i~Vd~~~~~~~~~~t~~~~IyA~GD~~~~ 417 (551)
+ +..++.. ++|++.||+++| |+.|||||+|||++.
T Consensus 157 VvG~~~l~~~~~~~~~~~g~i~vd~~~~------t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 157 VVGTEFLAEKLGVELDENGFIKVDENLQ------TSVPGIYAAGDCAGI 199 (201)
T ss_dssp EESTTTSTHHTTSTBTTTSSBEEBTTSB------BSSTTEEE-GGGBEE
T ss_pred cccccccccccccccccccccccccccc------ccccccccccccccc
Confidence 0 3345555 789999999999 789999999999864
No 373
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.11 E-value=0.00046 Score=73.22 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCcEEEeeC-CccC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVG 136 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~-~~~G 136 (551)
+||+|||||.+|+++|.+|++. |.+|+|+|| +.+|
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 5999999999999999999997 999999999 5443
No 374
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.10 E-value=0.00083 Score=70.11 Aligned_cols=92 Identities=24% Similarity=0.299 Sum_probs=70.0
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC---------CCCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP---------GFDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+-|+..|..|++.|++||++++.+..-. .++.++.+...+.|++ .|++++.+..+-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~-~Gv~~~~~~~vG~-- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLER-SGVEFKLNVRVGR-- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHH-cCeEEEEcceECC--
Confidence 358999999999999999999999999999998876432 2566788888888887 7899999976521
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCC-CCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRA-PFT 372 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~-p~~ 372 (551)
.+++++ ..-++|.|++++|.. |..
T Consensus 199 ---~it~~~-------L~~e~Dav~l~~G~~~~~~ 223 (457)
T COG0493 199 ---DITLEE-------LLKEYDAVFLATGAGKPRP 223 (457)
T ss_pred ---cCCHHH-------HHHhhCEEEEeccccCCCC
Confidence 122222 234569999999963 443
No 375
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0087 Score=62.86 Aligned_cols=134 Identities=22% Similarity=0.256 Sum_probs=80.0
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCe-EEEEcccCcCCC----------------------C--C--------CHHHHHHH
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSE-VTFIEALDQLMP----------------------G--F--------DPEIGKLA 316 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~----------------------~--~--------~~~~~~~~ 316 (551)
.+|+|||+|++|+-+|..|.+.|.. +.++++++.+-. . + -.++.+++
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 5799999999999999999999988 999998753211 0 1 01256667
Q ss_pred HHHHhCCCce----EEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecC--CCCCCCCCCcccccccCCC
Q 008850 317 QRVLINPRKI----DYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGR--APFTNGLGLENINVVTQRG 387 (551)
Q Consensus 317 ~~~l~~~~gi----~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~--~p~~~~l~l~~~~l~~~~G 387 (551)
...+++ +++ .+...+.+. .+++...|++.++.. .++.+|.||+|||. .|+...+ .|+..-.|
T Consensus 89 ~~~~~~-y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~----~~~~a~~vV~ATG~~~~P~iP~~----~G~~~f~g 159 (443)
T COG2072 89 KDYLEK-YGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT----GELTADFVVVATGHLSEPYIPDF----AGLDEFKG 159 (443)
T ss_pred HHHHHH-cCceeEEEcccceEEEEecCCCCeEEEEEcCCCe----eeEecCEEEEeecCCCCCCCCCC----CCccCCCc
Confidence 777765 443 333444333 344566777666521 12779999999997 3444322 12223333
Q ss_pred ceeeC-CCCccccCCCCCCCcEEEecCCC
Q 008850 388 FVPVD-ERMRVIDANGNLVPHLYCIGDAN 415 (551)
Q Consensus 388 ~i~Vd-~~~~~~~~~~t~~~~IyA~GD~~ 415 (551)
.+.=- ++-...+ -.-++|-+||--+
T Consensus 160 ~~~HS~~~~~~~~---~~GKrV~VIG~Ga 185 (443)
T COG2072 160 RILHSADWPNPED---LRGKRVLVIGAGA 185 (443)
T ss_pred eEEchhcCCCccc---cCCCeEEEECCCc
Confidence 22111 1111001 3457899999654
No 376
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.01 Score=54.44 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=32.5
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcC
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 304 (551)
.-.|+|||+|++|+-.|.+|++.|.+|.+++|+-.+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~ 65 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF 65 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc
Confidence 467999999999999999999999999999987543
No 377
>PRK02106 choline dehydrogenase; Validated
Probab=97.08 E-value=0.00056 Score=74.41 Aligned_cols=35 Identities=34% Similarity=0.549 Sum_probs=32.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHH-cCCcEEEeeCC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVE-KGLKTAIIEGD 133 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~-~g~~V~liE~~ 133 (551)
...||+||||+|++|+.+|.+|++ .|++|+|||+.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG 38 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence 345899999999999999999999 79999999984
No 378
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.07 E-value=0.0063 Score=63.62 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=31.7
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 35799999999999999999999999999997654
No 379
>PRK09126 hypothetical protein; Provisional
Probab=97.07 E-value=0.0063 Score=63.10 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=31.0
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 3699999999999999999999999999998753
No 380
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.05 E-value=0.00059 Score=72.52 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=30.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHc--CCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~~ 133 (551)
..+||+|||||+.|+++|.+|++. |++|+||||.
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~ 39 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERL 39 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 348999999999999999999985 7899999994
No 381
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.05 E-value=0.0072 Score=65.66 Aligned_cols=101 Identities=21% Similarity=0.216 Sum_probs=67.6
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-----CC----------------------------------
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FD---------------------------------- 309 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~---------------------------------- 309 (551)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 357999999999999999999999999999877532110 00
Q ss_pred ----------------------HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEE
Q 008850 310 ----------------------PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALI 364 (551)
Q Consensus 310 ----------------------~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~ 364 (551)
..+.+.+.+.+.+..+++++.++.++ .+++.+.+++.+. +...++.+|.||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~---~g~~~i~ad~vVg 179 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETP---DGPYTLEADWVIA 179 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECC---CCcEEEEeCEEEE
Confidence 01112233333332468888888776 3445555555432 1124789999999
Q ss_pred eecCCCCC
Q 008850 365 ATGRAPFT 372 (551)
Q Consensus 365 a~G~~p~~ 372 (551)
|.|.....
T Consensus 180 ADG~~S~v 187 (547)
T PRK08132 180 CDGARSPL 187 (547)
T ss_pred CCCCCcHH
Confidence 99987755
No 382
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.05 E-value=0.0057 Score=63.44 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=31.1
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
...|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 3579999999999999999999999999999864
No 383
>PRK05868 hypothetical protein; Validated
Probab=97.04 E-value=0.0051 Score=63.29 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=31.7
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 304 (551)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 57999999999999999999999999999987543
No 384
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.01 E-value=0.0031 Score=60.74 Aligned_cols=38 Identities=26% Similarity=0.581 Sum_probs=34.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
.|||||+|-|||+|+..+...|-.|+|+|+ ..+||...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 599999999999999999999888999999 77888655
No 385
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.01 E-value=0.0068 Score=65.68 Aligned_cols=101 Identities=23% Similarity=0.315 Sum_probs=68.7
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-----CCH----------------------------------
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FDP---------------------------------- 310 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~---------------------------------- 310 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+. +++
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 90 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGRC 90 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCCE
Confidence 57999999999999999999999999999877532110 000
Q ss_pred -----------------------HHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEE
Q 008850 311 -----------------------EIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALI 364 (551)
Q Consensus 311 -----------------------~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~ 364 (551)
++.+.+.+.+.+..|++++.++.++ .+++.+.+++.+. +++.+++.+|.||-
T Consensus 91 ~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~--~G~~~~i~ad~vVg 168 (538)
T PRK06183 91 LAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDA--DGQRETVRARYVVG 168 (538)
T ss_pred EEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcC--CCCEEEEEEEEEEe
Confidence 1112233333332478888888777 4556677777642 12235799999999
Q ss_pred eecCCCCC
Q 008850 365 ATGRAPFT 372 (551)
Q Consensus 365 a~G~~p~~ 372 (551)
|.|.....
T Consensus 169 ADG~~S~v 176 (538)
T PRK06183 169 CDGANSFV 176 (538)
T ss_pred cCCCchhH
Confidence 99976544
No 386
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.95 E-value=0.0008 Score=65.44 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=34.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
..+|.|||+|++||+||..|.++ ++|+|+|. ..+||...
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 36899999999999999999875 89999999 78999754
No 387
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.95 E-value=0.008 Score=62.56 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=65.2
Q ss_pred eEEEECCChhHHHHHHHHHhCC--CeEEEEcccCcCCCC-------CC--------------------------------
Q 008850 271 WIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLMPG-------FD-------------------------------- 309 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~-------~~-------------------------------- 309 (551)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+. +.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 899999986431100 00
Q ss_pred ----------------------------HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEe
Q 008850 310 ----------------------------PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLE 358 (551)
Q Consensus 310 ----------------------------~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~ 358 (551)
..+.+.+.+.+.+ .|++++.+..++ .+++.+.+++.++ +++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~v~v~~~~g------~~~~ 155 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEA-LGIDLREATSVTDFETRDEGVTVTLSDG------SVLE 155 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCCEEEEEECCC------CEEE
Confidence 0122233333443 578888877766 3445556666554 5789
Q ss_pred cCEEEEeecCCCCC
Q 008850 359 VDAALIATGRAPFT 372 (551)
Q Consensus 359 ~D~vi~a~G~~p~~ 372 (551)
+|.||.|.|.....
T Consensus 156 ad~vI~AdG~~S~v 169 (403)
T PRK07333 156 ARLLVAADGARSKL 169 (403)
T ss_pred eCEEEEcCCCChHH
Confidence 99999999987654
No 388
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.94 E-value=0.0069 Score=60.79 Aligned_cols=107 Identities=18% Similarity=0.262 Sum_probs=73.3
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC--CCC---------CHHHHHHHHHHHhCCC-ceEEEeceEEE-
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM--PGF---------DPEIGKLAQRVLINPR-KIDYHTGVFAT- 335 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~~~---------~~~~~~~~~~~l~~~~-gi~~~~~~~~~- 335 (551)
.|+|+|+|+|-.|+-+...|-..-.+|+++..++.|+ |.+ -..+.+.+.....+.. +++++......
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~i 134 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTKI 134 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccEee
Confidence 4899999999999999999888889999999887653 222 2445666666655422 67777665554
Q ss_pred -eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCC
Q 008850 336 -KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGL 375 (551)
Q Consensus 336 -~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l 375 (551)
.+.+.+.++.........+..+.+|.+++|+|..||+..+
T Consensus 135 Dp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi 175 (491)
T KOG2495|consen 135 DPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI 175 (491)
T ss_pred cccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC
Confidence 2333344433222222233578999999999999998754
No 389
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.94 E-value=0.009 Score=69.27 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=66.8
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC----------CC-HHHHHHHHHHHhCCCceEEEeceEEE-e
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG----------FD-PEIGKLAQRVLINPRKIDYHTGVFAT-K 336 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~~-~~~~~~~~~~l~~~~gi~~~~~~~~~-~ 336 (551)
...|+|||+|+.|+..|..+++.|.+|++++..+.+... .+ .+......+.+.+..+|+++.++.+. .
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 467999999999999999999999999999987654321 11 12223344445442369999888776 2
Q ss_pred -CCCcE-EEE-Ee-------cccCCCCCeEEecCEEEEeecCCCCCC
Q 008850 337 -DGKPV-TIE-LI-------DAKTKEPKDTLEVDAALIATGRAPFTN 373 (551)
Q Consensus 337 -~~~~~-~v~-~~-------~g~~~~~~~~i~~D~vi~a~G~~p~~~ 373 (551)
++..+ .+. .. ++...+...++.+|.||+|||..|...
T Consensus 243 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 22211 111 10 010111123689999999999887543
No 390
>PRK06184 hypothetical protein; Provisional
Probab=96.94 E-value=0.0077 Score=64.70 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=66.0
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-----CCH----------------------------------
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FDP---------------------------------- 310 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~---------------------------------- 310 (551)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 46999999999999999999999999999876533110 000
Q ss_pred --------------------------HHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCE
Q 008850 311 --------------------------EIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDA 361 (551)
Q Consensus 311 --------------------------~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~ 361 (551)
.+.+.+.+.+.+ .|++++.++.+. .+++.+.+++.+. ++.+++.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~-~gv~i~~~~~v~~i~~~~~~v~v~~~~~---~~~~~i~a~~ 159 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAE-LGHRVEFGCELVGFEQDADGVTARVAGP---AGEETVRARY 159 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHH-CCCEEEeCcEEEEEEEcCCcEEEEEEeC---CCeEEEEeCE
Confidence 012233444444 578888887776 3445566666332 1235799999
Q ss_pred EEEeecCCC
Q 008850 362 ALIATGRAP 370 (551)
Q Consensus 362 vi~a~G~~p 370 (551)
||.|.|...
T Consensus 160 vVgADG~~S 168 (502)
T PRK06184 160 LVGADGGRS 168 (502)
T ss_pred EEECCCCch
Confidence 999999653
No 391
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.011 Score=58.70 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=66.0
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCe-EEEEcccCc---C--------CCC-----CCHHHHHHHHHHHhCCCceEEEece
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSE-VTFIEALDQ---L--------MPG-----FDPEIGKLAQRVLINPRKIDYHTGV 332 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~---~--------l~~-----~~~~~~~~~~~~l~~~~gi~~~~~~ 332 (551)
-.|+|||+|+.|+-.|.++.+.+.+ +.+++.... + .|. ..+++.+...+..+. .++++....
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~-~~~~~~~~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEK-FGVEIVEDE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhh-cCeEEEEEE
Confidence 3689999999999999999999988 555554211 0 122 234555566666654 788888743
Q ss_pred EEE-eCCC-cEEEEEecccCCCCCeEEecCEEEEeecCCCCCCCC
Q 008850 333 FAT-KDGK-PVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGL 375 (551)
Q Consensus 333 ~~~-~~~~-~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l 375 (551)
... .... ...|+..++ +..++.||+|+|..+....+
T Consensus 83 v~~v~~~~~~F~v~t~~~-------~~~ak~vIiAtG~~~~~~~~ 120 (305)
T COG0492 83 VEKVELEGGPFKVKTDKG-------TYEAKAVIIATGAGARKLGV 120 (305)
T ss_pred EEEEeecCceEEEEECCC-------eEEEeEEEECcCCcccCCCC
Confidence 333 3333 556665554 49999999999988765543
No 392
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.93 E-value=0.0098 Score=61.55 Aligned_cols=97 Identities=25% Similarity=0.325 Sum_probs=69.5
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEccc-CcCCCC-----CC----------------------------------
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL-DQLMPG-----FD---------------------------------- 309 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~-----~~---------------------------------- 309 (551)
..|+|||+|+.|+-+|..|++.|.+|+|+++. +.+.+. +.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR 82 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence 57999999999999999999999999999987 222210 00
Q ss_pred ---------------------HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEe-cccCCCCCeEEecCEEEE
Q 008850 310 ---------------------PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELI-DAKTKEPKDTLEVDAALI 364 (551)
Q Consensus 310 ---------------------~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~-~g~~~~~~~~i~~D~vi~ 364 (551)
.++.+.+.+.+.+..+|+++.+..++ .+++.+.+++. +| +++.+|.||-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG------~~~~a~llVg 156 (387)
T COG0654 83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDG------ETLDADLLVG 156 (387)
T ss_pred eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCC------cEEecCEEEE
Confidence 12233444444443458999888877 44456667776 55 5899999999
Q ss_pred eecCCCCC
Q 008850 365 ATGRAPFT 372 (551)
Q Consensus 365 a~G~~p~~ 372 (551)
|=|.....
T Consensus 157 ADG~~S~v 164 (387)
T COG0654 157 ADGANSAV 164 (387)
T ss_pred CCCCchHH
Confidence 99976543
No 393
>PRK08244 hypothetical protein; Provisional
Probab=96.92 E-value=0.0075 Score=64.61 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=67.9
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-----CC-----------------------------------
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FD----------------------------------- 309 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~----------------------------------- 309 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++.+...+. +.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999976432110 00
Q ss_pred -----------------HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCC
Q 008850 310 -----------------PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 369 (551)
Q Consensus 310 -----------------~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 369 (551)
..+.+.+.+.+++ .|++++.++.++ .+++.+.+++.+.. + .+++.+|.||.|.|..
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~v~v~~~~~~--g-~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARS-LGVEIFRGAEVLAVRQDGDGVEVVVRGPD--G-LRTLTSSYVVGADGAG 158 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHH-cCCeEEeCCEEEEEEEcCCeEEEEEEeCC--c-cEEEEeCEEEECCCCC
Confidence 1123334444444 688898887776 44555666665321 1 2478999999999986
Q ss_pred CC
Q 008850 370 PF 371 (551)
Q Consensus 370 p~ 371 (551)
..
T Consensus 159 S~ 160 (493)
T PRK08244 159 SI 160 (493)
T ss_pred hH
Confidence 53
No 394
>PRK13984 putative oxidoreductase; Provisional
Probab=96.92 E-value=0.0025 Score=70.11 Aligned_cols=90 Identities=28% Similarity=0.283 Sum_probs=64.2
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC-------CC--CCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|+.|+..|..|.+.|.+|+++++.+.+. +. +..+..+...+.+++ .|++++.++.+..+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~~- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEA-LGVKIHLNTRVGKD- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHH-CCcEEECCCEeCCc-
Confidence 46889999999999999999999999999998876541 11 234444444456665 79999988765311
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRAP 370 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 370 (551)
+.+.+ ....+|.||+|+|..+
T Consensus 360 ----~~~~~-------~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 ----IPLEE-------LREKHDAVFLSTGFTL 380 (604)
T ss_pred ----CCHHH-------HHhcCCEEEEEcCcCC
Confidence 11111 2357999999999753
No 395
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.91 E-value=0.0054 Score=63.89 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=30.2
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999865
No 396
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.91 E-value=0.0018 Score=69.16 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=66.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCHHH
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 182 (551)
.-+|||||--|+.+|..|.+.|.++.|++=.+ .-
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~----------------------------------------------~l 180 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP----------------------------------------------TL 180 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecc----------------------------------------------hH
Confidence 47999999999999999999999999996311 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEE-----eCCcEEEeCcceEEEeCeEEEeCCCCCCC
Q 008850 183 VADHANNLATKIRNNLTNSMKALGVDILTGVGTI-----LGPQKVKFGTDNIVTAKDIIIATGSVPFV 245 (551)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~v~~~~g~~i~~d~lVlAtG~~p~~ 245 (551)
+.+.++.... ..++..+++.|+.++.+..+. .....+...||..+.+|-||.|+|.+|+.
T Consensus 181 MerQLD~~ag---~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 181 MERQLDRTAG---RLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND 245 (793)
T ss_pred HHHhhhhHHH---HHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccccc
Confidence 1111111112 234556777899988875432 12245677889999999999999999874
No 397
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.90 E-value=0.021 Score=58.53 Aligned_cols=44 Identities=30% Similarity=0.422 Sum_probs=35.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHc--CCcEEEeeC-CccC----cccccCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVG----GTCVNRG 143 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~-~~~G----G~~~~~g 143 (551)
.++|||+||||..|.+.+..|++. .++|.|+|| +.++ ..|+|.|
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAG 52 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAG 52 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccc
Confidence 358999999999999999999997 589999999 6554 3455544
No 398
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.88 E-value=0.0011 Score=65.22 Aligned_cols=35 Identities=37% Similarity=0.558 Sum_probs=32.4
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
...+||+|||||.+|.+.|..|++.|.+|.||||+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 34589999999999999999999999999999984
No 399
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.88 E-value=0.01 Score=61.40 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=31.2
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3699999999999999999999999999998754
No 400
>PRK07045 putative monooxygenase; Reviewed
Probab=96.86 E-value=0.013 Score=60.75 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=31.6
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 304 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 47999999999999999999999999999877643
No 401
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.85 E-value=0.0014 Score=66.00 Aligned_cols=51 Identities=33% Similarity=0.550 Sum_probs=44.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccccCCccCChhh
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKAL 150 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~~g~~p~~~~ 150 (551)
..||++|||+|.-||.||..|++.|.+|+++|+ ..+||..+..-.+|...+
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKf 64 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKF 64 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhcccccc
Confidence 359999999999999999999999999999999 689998887777775443
No 402
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.85 E-value=0.011 Score=62.59 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..+|+|||+|..|+.+|..|++.|++|+++|+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 368999999999999999999999999999873
No 403
>PRK07588 hypothetical protein; Provisional
Probab=96.84 E-value=0.014 Score=60.45 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=30.7
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
+|+|||||+.|+-+|..|++.|.+|+++++.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 699999999999999999999999999997754
No 404
>PRK06753 hypothetical protein; Provisional
Probab=96.81 E-value=0.0069 Score=62.31 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=31.4
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcC
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 304 (551)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 6999999999999999999999999999987643
No 405
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.80 E-value=0.024 Score=54.07 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcC------CcEEEeeCCc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKG------LKTAIIEGDV 134 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g------~~V~liE~~~ 134 (551)
..+|+|||||..|+.+|..|.+.+ +.|+|||+..
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 369999999999999999999986 7899999844
No 406
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.80 E-value=0.0092 Score=61.69 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=30.1
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 69999999999999999999999999999764
No 407
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.79 E-value=0.01 Score=54.70 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=59.5
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-------CC-------------------------------H
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------FD-------------------------------P 310 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------~~-------------------------------~ 310 (551)
...|+|||+|++|+-.|..|++.|.+|.+++++..+-.. |. .
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 357999999999999999999999999999987543211 11 0
Q ss_pred HH-HHHHHHHHhCCCceEEEeceEEE----eC-CCcEEEEEeccc--C---CCCCeEEecCEEEEeecCCCCCC
Q 008850 311 EI-GKLAQRVLINPRKIDYHTGVFAT----KD-GKPVTIELIDAK--T---KEPKDTLEVDAALIATGRAPFTN 373 (551)
Q Consensus 311 ~~-~~~~~~~l~~~~gi~~~~~~~~~----~~-~~~~~v~~~~g~--~---~~~~~~i~~D~vi~a~G~~p~~~ 373 (551)
+. +..+.+.+ + .|++++..+.+. .+ ++...+.+.-.. . .-+...+++..|+-+||...+.-
T Consensus 97 ~~~s~L~s~a~-~-aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 97 EFTSTLASKAI-D-AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp HHHHHHHHHHH-T-TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred HHHHHHHHHHh-c-CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 11 22233333 3 789999888776 34 333333321100 0 01124789999999999876543
No 408
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.78 E-value=0.0014 Score=65.57 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=33.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc--EEEeeC-CccCccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLK--TAIIEG-DVVGGTC 139 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~--V~liE~-~~~GG~~ 139 (551)
.+|+|+|||.+||++|..|++++.+ ++|+|+ +++||-.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 6899999999999999999999765 567999 8898843
No 409
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.76 E-value=0.017 Score=60.00 Aligned_cols=34 Identities=32% Similarity=0.323 Sum_probs=31.5
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999987654
No 410
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.75 E-value=0.013 Score=63.03 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=29.6
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
.|+|||||+.|++.|..+++.|.+|.++++.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 5999999999999999999999999999886
No 411
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.73 E-value=0.005 Score=67.08 Aligned_cols=91 Identities=24% Similarity=0.271 Sum_probs=62.3
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC---------CCCHHHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP---------GFDPEIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
.+++|+|||+|++|+..|..|++.|.+|+++++.+.+.. .++.+..+.-.+.+++ .|++++.+..+..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~-~Gv~~~~~~~~~~~- 213 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILD-LGVEVRLGVRVGED- 213 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHH-CCCEEEeCCEECCc-
Confidence 468999999999999999999999999999998765421 1344444443444555 78988887654100
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 371 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 371 (551)
+.... ....+|.|++|+|..+.
T Consensus 214 ----~~~~~-------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 214 ----ITLEQ-------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred ----CCHHH-------HHhhCCEEEEeeCCCCC
Confidence 00000 12248999999998653
No 412
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.72 E-value=0.016 Score=59.72 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=30.1
Q ss_pred eEEEECCChhHHHHHHHHHhCC-CeEEEEcccCc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQ 303 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~ 303 (551)
.|+|||+|+.|+-+|..|++.| .+|+++++.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 3899999999999999999999 99999998653
No 413
>PRK07190 hypothetical protein; Provisional
Probab=96.70 E-value=0.016 Score=61.73 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
..|+|||+|++|+-+|..|++.|.+|.++++.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 469999999999999999999999999998764
No 414
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.70 E-value=0.00049 Score=62.08 Aligned_cols=40 Identities=40% Similarity=0.606 Sum_probs=33.6
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCcEEEeeC--CccCcccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG--DVVGGTCV 140 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~--~~~GG~~~ 140 (551)
..||+|||+|.+||+||+.+.+. +++|.|||. .+-||.|+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 35999999999999999999854 689999998 44566665
No 415
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.67 E-value=0.017 Score=60.71 Aligned_cols=33 Identities=30% Similarity=0.244 Sum_probs=30.4
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 369999999999999999999999999999764
No 416
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.62 E-value=0.016 Score=59.94 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.0
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 389999999999999999999999999997653
No 417
>PRK08013 oxidoreductase; Provisional
Probab=96.60 E-value=0.023 Score=59.14 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.3
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4699999999999999999999999999998754
No 418
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.59 E-value=0.0055 Score=63.25 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=32.1
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM 305 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l 305 (551)
+|+|||||..|+|+|..|++.|.+|+++++++.++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 68999999999999999999999999999877643
No 419
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.57 E-value=0.024 Score=58.47 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=30.5
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 389999999999999999999999999998863
No 420
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.56 E-value=0.021 Score=59.51 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=30.2
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999985
No 421
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.51 E-value=0.012 Score=62.40 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
+|+|||.|++|+++|..|.++|++|+++|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 5899999999999999999999999999973
No 422
>PRK06126 hypothetical protein; Provisional
Probab=96.50 E-value=0.029 Score=60.97 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=31.1
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3579999999999999999999999999998764
No 423
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.50 E-value=0.029 Score=58.12 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 479999999999999999999999999999764
No 424
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.49 E-value=0.032 Score=57.43 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=29.4
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 5899999999999999999999999999975
No 425
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.43 E-value=0.0029 Score=68.17 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=32.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
+..++|+||||+|.+|..+|.+|.+.|++|+|+|+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 345699999999999999999999889999999983
No 426
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.42 E-value=0.018 Score=60.91 Aligned_cols=43 Identities=30% Similarity=0.553 Sum_probs=35.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-EEEeeCC--ccCcccccCCc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLK-TAIIEGD--VVGGTCVNRGC 144 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~-V~liE~~--~~GG~~~~~g~ 144 (551)
.||||||||.+|+++|.+|++.|.+ .++.|+. .-|++|..+|.
T Consensus 40 A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl 85 (856)
T KOG2844|consen 40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGL 85 (856)
T ss_pred ccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccc
Confidence 5999999999999999999999998 4555553 46888876553
No 427
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.40 E-value=0.039 Score=57.16 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=29.7
Q ss_pred ceEEEECCChhHHHHHHHHHhC---CCeEEEEccc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTAL---GSEVTFIEAL 301 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~---g~~Vtlv~~~ 301 (551)
-+|+|||+|+.|+-+|..|++. |.+|+++++.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3699999999999999999998 9999999984
No 428
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.39 E-value=0.0057 Score=45.84 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=28.9
Q ss_pred EECCChhHHHHHHHHHhCCCeEEEEcccCcCC
Q 008850 274 IVGSGYIGLEFSDVYTALGSEVTFIEALDQLM 305 (551)
Q Consensus 274 VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l 305 (551)
|||+|.+|+..|..|++.|.+|+++++.+++-
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999988753
No 429
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.38 E-value=0.03 Score=57.88 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=31.1
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4699999999999999999999999999998753
No 430
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.35 E-value=0.016 Score=59.46 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=30.0
Q ss_pred EEEECCChhHHHHHHHHHhC--CCeEEEEcccCcC
Q 008850 272 IAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQL 304 (551)
Q Consensus 272 v~VvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~ 304 (551)
|+|||+|..|+.+|..|++. |.+|.++++.+.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 79999999999999999987 9999999987644
No 431
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.32 E-value=0.04 Score=56.14 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=66.1
Q ss_pred CCcEEEeeC-Ccc--------CcccccCCccCChhhH-----------hhHHHHHHHHhhhhhhhcCcccccc----ccC
Q 008850 124 GLKTAIIEG-DVV--------GGTCVNRGCVPSKALL-----------AVSGRMRELQSEHHMKALGLQVHAA----GYD 179 (551)
Q Consensus 124 g~~V~liE~-~~~--------GG~~~~~g~~p~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~----~~~ 179 (551)
|.+|+|+|+ +.+ ||.|+....-+...+. .....+..-....++...|++.... -|+
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP 80 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP 80 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence 568999999 554 5889866643322221 1111111112235777788753311 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-EeC--CcEEEeCc-ceEEEeCeEEEeCCCCC
Q 008850 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILG--PQKVKFGT-DNIVTAKDIIIATGSVP 243 (551)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~--~~~v~~~~-g~~i~~d~lVlAtG~~p 243 (551)
. ......+...+...+++.||+++.+..+ .++ .+.+.+.. +..+.+|+||||||+.+
T Consensus 81 ~-------S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 81 V-------EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred C-------CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 1 0113556667777888899999988644 332 24565543 34699999999999764
No 432
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.32 E-value=0.046 Score=58.81 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=63.3
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC---C---------------CCC-----------------------
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---P---------------GFD----------------------- 309 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l---~---------------~~~----------------------- 309 (551)
.|+|||+|..|++.|..+++.|.+|.++++..... + .++
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998753110 0 000
Q ss_pred -------------H-HHHHHHHHHHhCCCceEEEeceEEE---e-CCCcEEEEEecccCCCCCeEEecCEEEEeecCCC
Q 008850 310 -------------P-EIGKLAQRVLINPRKIDYHTGVFAT---K-DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 370 (551)
Q Consensus 310 -------------~-~~~~~~~~~l~~~~gi~~~~~~~~~---~-~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 370 (551)
+ .+...+.+.+++..++.++.+..+. . ++....|.+.++ ..+.+|.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G------~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDG------LKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCC------CEEECCEEEEccCccc
Confidence 0 0112344445553478887665443 2 344556776554 5799999999999654
No 433
>PLN02785 Protein HOTHEAD
Probab=96.25 E-value=0.0054 Score=66.66 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=30.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..||+||||||.||+.+|.+|.+ +.+|+|||+.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G 86 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERG 86 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecC
Confidence 35999999999999999999999 6999999983
No 434
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.24 E-value=0.067 Score=55.38 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=29.4
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
.|+|||+|+.|+-+|..|++.|.+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999986
No 435
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.23 E-value=0.0032 Score=64.99 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=33.7
Q ss_pred ccEEEECCChHHHHHHHHHHHc----CCcEEEeeC-CccCcccc
Q 008850 102 YDLIIIGAGVGGHGAALHAVEK----GLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~----g~~V~liE~-~~~GG~~~ 140 (551)
.+.=|||+|.|+|+||..|-|- |.+|.|+|+ +..||.+-
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 4788999999999999999885 568999999 77787765
No 436
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.19 E-value=0.05 Score=56.87 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=30.9
Q ss_pred eEEEECCChhHHHHHHHHHhCC-CeEEEEcccCcC
Q 008850 271 WIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQL 304 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~ 304 (551)
+|+|||+|..|+-+|..|++.| .+|+|+++.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 6999999999999999999998 599999987654
No 437
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.17 E-value=0.0041 Score=67.24 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKG-LKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g-~~V~liE~~ 133 (551)
|+||||||.||+.+|.+|++.+ ++|+|||+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG 32 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAG 32 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecC
Confidence 7999999999999999999998 799999984
No 438
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.14 E-value=0.058 Score=55.94 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=66.6
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC--C------------------C----------------------
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM--P------------------G---------------------- 307 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~------------------~---------------------- 307 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . +
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 579999999999999999999999999999876310 0 0
Q ss_pred -----C-------------CHHHHHHHHHHHhCCCceEEEeceEEE---e-CCCcEEEEEe-cccCCCCCeEEecCEEEE
Q 008850 308 -----F-------------DPEIGKLAQRVLINPRKIDYHTGVFAT---K-DGKPVTIELI-DAKTKEPKDTLEVDAALI 364 (551)
Q Consensus 308 -----~-------------~~~~~~~~~~~l~~~~gi~~~~~~~~~---~-~~~~~~v~~~-~g~~~~~~~~i~~D~vi~ 364 (551)
+ ..++.+.+.+...+ .|++++.++.++ . +++...|++. +| +..++.+|.||-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~-~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G----~~~~i~ad~vVg 157 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLA-AGGPIRFEASDVALHDFDSDRPYVTYEKDG----EEHRLDCDFIAG 157 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHh-CCCeEEEeeeEEEEEecCCCceEEEEEcCC----eEEEEEeCEEEE
Confidence 0 00111122222233 678888887765 2 4455666663 32 224789999999
Q ss_pred eecCCCCCC
Q 008850 365 ATGRAPFTN 373 (551)
Q Consensus 365 a~G~~p~~~ 373 (551)
|-|......
T Consensus 158 ADG~~S~vR 166 (392)
T PRK08243 158 CDGFHGVSR 166 (392)
T ss_pred CCCCCCchh
Confidence 999876553
No 439
>PRK09897 hypothetical protein; Provisional
Probab=96.11 E-value=0.067 Score=57.31 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=29.0
Q ss_pred ceEEEECCChhHHHHHHHHHhCC--CeEEEEcccCc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQ 303 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~ 303 (551)
++|+|||+|++|+-+|..|.+.+ .+|++++++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 57999999999999999998765 48999987544
No 440
>PLN02697 lycopene epsilon cyclase
Probab=96.11 E-value=0.048 Score=58.39 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.2
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
-.|+|||+|+.|+.+|..|++.|.+|.++++.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 36999999999999999999999999999865
No 441
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.06 E-value=0.036 Score=57.54 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=27.0
Q ss_pred EEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 273 AIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 273 ~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
+|||+|+.|+-.|..+++.|.+|+++++.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc
Confidence 5899999999999999999999999987654
No 442
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.06 E-value=0.055 Score=56.19 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=62.4
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC------------------CCCH----------------------
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP------------------GFDP---------------------- 310 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------~~~~---------------------- 310 (551)
.|+|||+|+.|.-+|..|++.|.+|.++++++.+-. .+.+
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 599999999999999999999999999998653211 1110
Q ss_pred -----------HHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEEEeecCC
Q 008850 311 -----------EIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 369 (551)
Q Consensus 311 -----------~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 369 (551)
.+-+++.+..++ .|.+++.++.+. .+++...+....+ ..++.++.||.|.|..
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~-aGae~~~~~~~~~~~~~~~~~~~~~~~~-----~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEE-AGAELYPGTRVTGVIREDDGVVVGVRAG-----DDEVRAKVVIDADGVN 151 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHH-cCCEEEeceEEEEEEEeCCcEEEEEEcC-----CEEEEcCEEEECCCcc
Confidence 112233444444 678888887776 3333333333322 1589999999999954
No 443
>PRK07538 hypothetical protein; Provisional
Probab=96.01 E-value=0.079 Score=55.36 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=30.7
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 699999999999999999999999999998764
No 444
>PRK10015 oxidoreductase; Provisional
Probab=95.94 E-value=0.078 Score=55.63 Aligned_cols=33 Identities=30% Similarity=0.241 Sum_probs=30.2
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
-.|+|||+|+.|+-.|..|++.|.+|.++++.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 369999999999999999999999999998764
No 445
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.92 E-value=0.0035 Score=64.49 Aligned_cols=39 Identities=41% Similarity=0.774 Sum_probs=34.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccC
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVG 136 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~G 136 (551)
....+||+|||||..|-.+|.-+.-+|+++.|+|++.++
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 344599999999999999999999999999999995543
No 446
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.91 E-value=0.027 Score=58.63 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=64.8
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcC---CC-----------------------------------------
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL---MP----------------------------------------- 306 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~---l~----------------------------------------- 306 (551)
.|+|||||..|+|.|...++.|.++.+++....- |+
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~s 85 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNSS 85 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccCC
Confidence 6999999999999999999999998887543211 00
Q ss_pred ----------CCCH-HHHHHHHHHHhCCCceEEEeceEEE---eCCC-cEEEEEecccCCCCCeEEecCEEEEeecC
Q 008850 307 ----------GFDP-EIGKLAQRVLINPRKIDYHTGVFAT---KDGK-PVTIELIDAKTKEPKDTLEVDAALIATGR 368 (551)
Q Consensus 307 ----------~~~~-~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~-~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 368 (551)
..|. .+...+++.++...++.++.+.... .+++ ...|.+.+| ..+.++.||++||.
T Consensus 86 KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G------~~~~a~aVVlTTGT 156 (621)
T COG0445 86 KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG------PEFHAKAVVLTTGT 156 (621)
T ss_pred CcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCC------CeeecCEEEEeecc
Confidence 0011 1344556666666788887776544 3443 567777776 78999999999993
No 447
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.90 E-value=0.042 Score=55.63 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=27.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCC--cEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGL--KTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~--~V~liE~~ 133 (551)
...+|+|||||.++...+..|.+.+. +|+++-|.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS 224 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence 34799999999999999999999864 79999873
No 448
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.89 E-value=0.0088 Score=62.74 Aligned_cols=93 Identities=22% Similarity=0.295 Sum_probs=27.2
Q ss_pred EEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC--------------------------------------------
Q 008850 272 IAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------------------------------------------- 307 (551)
Q Consensus 272 v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------- 307 (551)
|+|||||+.|+-.|..+++.|.+|.|+++.+.+...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 899999999999999999999999999987654210
Q ss_pred -----CCHHHHH-HHHHHHhCCCceEEEeceEEE----eCCCcEEEEEecccCCCCCeEEecCEEEEeecC
Q 008850 308 -----FDPEIGK-LAQRVLINPRKIDYHTGVFAT----KDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 368 (551)
Q Consensus 308 -----~~~~~~~-~~~~~l~~~~gi~~~~~~~~~----~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 368 (551)
++++..+ .+.+.+.+ .||++++++.+. ++++...|++.+.. ...++.++.+|-|||.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~---g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRDGGRITGVIVETKS---GRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccc---cccccccccccccccc
Confidence 1111111 22333333 688888888776 33344556654421 1468999999999993
No 449
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.062 Score=49.33 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=66.5
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEccc--------Cc--------CCCCC-----CHHHHHHHHHHHhCCCceE
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL--------DQ--------LMPGF-----DPEIGKLAQRVLINPRKID 327 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~--------~~--------~l~~~-----~~~~~~~~~~~l~~~~gi~ 327 (551)
..+|+|||+|+.+.-.|.++++...+-.+++-. .+ -+|+| .+++.+.++++-++ .|.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r-~Gt~ 86 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSER-FGTE 86 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHh-hcce
Confidence 468999999999999999998876655555421 11 12333 46777777777776 8999
Q ss_pred EEeceEEE--eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCC
Q 008850 328 YHTGVFAT--KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 372 (551)
Q Consensus 328 ~~~~~~~~--~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 372 (551)
+++.+.-. ...+...+..+. +.+.+|.||++||.....
T Consensus 87 i~tEtVskv~~sskpF~l~td~-------~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWTDA-------RPVTADAVILATGASAKR 126 (322)
T ss_pred eeeeehhhccccCCCeEEEecC-------CceeeeeEEEecccceee
Confidence 98876544 344444444322 578999999999976644
No 450
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.84 E-value=0.027 Score=57.50 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=48.5
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC-------CCH---HH---HHHHHHHHhCCCceEEEeceEEE
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------FDP---EI---GKLAQRVLINPRKIDYHTGVFAT 335 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------~~~---~~---~~~~~~~l~~~~gi~~~~~~~~~ 335 (551)
.++++|||||..|++.|..|++.|.+|+++++.+.+... |+. .+ +..+.+. ....+|++++.+.+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v-~~hp~i~l~TyaeV~ 202 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEV-SNHPNIELITYAEVE 202 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhh-ccCCceeeeeeeeee
Confidence 579999999999999999999999999999998876432 111 11 1122222 234689999888877
No 451
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.82 E-value=0.12 Score=53.58 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=30.0
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
+|+|||+|+.|+-+|..|++.|.+|.++++.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999999764
No 452
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.79 E-value=0.063 Score=53.73 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=62.7
Q ss_pred cccEEEECCChHHHHHHHHHHHc----CCcEE-EeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccc
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEK----GLKTA-IIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~----g~~V~-liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (551)
...|-|||+|+-|-..|..|.+. |.+|. ||+..
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek------------------------------------------ 384 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK------------------------------------------ 384 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc------------------------------------------
Confidence 46799999999999999988874 44443 34321
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEE-----EeCCcEEEeCcceEEEeCeEEEeCCCCCCC
Q 008850 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-----ILGPQKVKFGTDNIVTAKDIIIATGSVPFV 245 (551)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~v~~~~g~~i~~d~lVlAtG~~p~~ 245 (551)
++...+. .+.+.++....+++.||+++.+... ....-.+.+.||.++..|.||+|+|..|+.
T Consensus 385 --~nm~kiL------Peyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 385 --YNMEKIL------PEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred --CChhhhh------HHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 1111110 1233344455667789998877532 122345677899999999999999999874
No 453
>PRK06185 hypothetical protein; Provisional
Probab=95.76 E-value=0.11 Score=54.03 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.7
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 579999999999999999999999999999764
No 454
>PRK06996 hypothetical protein; Provisional
Probab=95.74 E-value=0.1 Score=54.13 Aligned_cols=96 Identities=23% Similarity=0.273 Sum_probs=63.3
Q ss_pred ceEEEECCChhHHHHHHHHHhCC----CeEEEEcccCcCCCC-------CC-----------------------------
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALG----SEVTFIEALDQLMPG-------FD----------------------------- 309 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g----~~Vtlv~~~~~~l~~-------~~----------------------------- 309 (551)
..|+|||+|+.|+-+|..|++.| .+|+++++.+..-+. +.
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~ 91 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQRG 91 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecCC
Confidence 57999999999999999999986 479999875321000 00
Q ss_pred -----------------------HHHHHHHHHHHhCCCceEEEeceEEE---eCCCcEEEEEecccCCCCCeEEecCEEE
Q 008850 310 -----------------------PEIGKLAQRVLINPRKIDYHTGVFAT---KDGKPVTIELIDAKTKEPKDTLEVDAAL 363 (551)
Q Consensus 310 -----------------------~~~~~~~~~~l~~~~gi~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~i~~D~vi 363 (551)
.++.+.+.+.+.+ .+++++.+..+. .+++.+.+++.++. + .+++.+|.||
T Consensus 92 ~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~-~g~~~~~~~~v~~~~~~~~~v~v~~~~~~--g-~~~i~a~lvI 167 (398)
T PRK06996 92 HFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRG-TPVRWLTSTTAHAPAQDADGVTLALGTPQ--G-ARTLRARIAV 167 (398)
T ss_pred CCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHh-CCCEEEcCCeeeeeeecCCeEEEEECCCC--c-ceEEeeeEEE
Confidence 1123334444444 567777777665 34455666665431 1 2579999999
Q ss_pred EeecCC
Q 008850 364 IATGRA 369 (551)
Q Consensus 364 ~a~G~~ 369 (551)
-|-|..
T Consensus 168 gADG~~ 173 (398)
T PRK06996 168 QAEGGL 173 (398)
T ss_pred ECCCCC
Confidence 999954
No 455
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.71 E-value=0.12 Score=53.53 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=32.0
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 35799999999999999999999999999998764
No 456
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=95.59 E-value=0.14 Score=52.70 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=29.5
Q ss_pred EEEECCChhHHHHHHHH--HhCCCeEEEEcccCcC
Q 008850 272 IAIVGSGYIGLEFSDVY--TALGSEVTFIEALDQL 304 (551)
Q Consensus 272 v~VvG~G~~g~e~A~~l--~~~g~~Vtlv~~~~~~ 304 (551)
|+|||+|+.|+-+|..| .+.|.+|.++++.+..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 79999999999999999 7789999999876544
No 457
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.43 E-value=0.16 Score=53.49 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=28.7
Q ss_pred eEEEECCChhHHHHHHHHHh----CCCeEEEEccc
Q 008850 271 WIAIVGSGYIGLEFSDVYTA----LGSEVTFIEAL 301 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~----~g~~Vtlv~~~ 301 (551)
.|+|||+|+.|+-+|..|++ .|.+|+++++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 48999999999999999998 79999999983
No 458
>PLN02985 squalene monooxygenase
Probab=95.38 E-value=0.22 Score=53.43 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=29.1
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
..|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 468999999999999999999999999998763
No 459
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.38 E-value=0.025 Score=56.71 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
+|.|||.|..||..|.-+++.|++|+.+|.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 7999999999999999999999999999973
No 460
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=95.36 E-value=0.014 Score=56.27 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=30.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHc--CCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~--g~~V~liE~~ 133 (551)
.+||+||||||..|++.|.+|.-+ +++|.|+|++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke 82 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKE 82 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehh
Confidence 459999999999999999998766 8999999994
No 461
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.33 E-value=0.028 Score=52.41 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
.+|+|||||..|...+..|.+.|.+|+||++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 5899999999999999999999999999976
No 462
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.31 E-value=0.019 Score=60.97 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=31.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHc-CCcEEEeeC
Q 008850 98 KSFDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG 132 (551)
Q Consensus 98 ~~~~~dVvIIGgG~AGl~aA~~l~~~-g~~V~liE~ 132 (551)
....||.||||||.||+..|.+|.+. .++|+|+|+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEa 89 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEA 89 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEec
Confidence 44569999999999999999999986 689999998
No 463
>PRK11445 putative oxidoreductase; Provisional
Probab=95.26 E-value=0.19 Score=51.23 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=29.0
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
.|+|||+|+.|+-+|..|++. .+|+++++.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 589999999999999999999 9999999876
No 464
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.25 E-value=0.17 Score=44.86 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=24.8
Q ss_pred EEECCChhHHHHHHHHHhC-----CCeEEEEccc
Q 008850 273 AIVGSGYIGLEFSDVYTAL-----GSEVTFIEAL 301 (551)
Q Consensus 273 ~VvG~G~~g~e~A~~l~~~-----g~~Vtlv~~~ 301 (551)
+|||+|++|+-++..|.+. ..+|+++++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~ 34 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPS 34 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 5999999999999999877 4678998874
No 465
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.13 E-value=0.027 Score=57.97 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.2
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 304 (551)
++|+|||||..|+++|..|++.|.+|+++++++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976654
No 466
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.00 E-value=0.23 Score=53.31 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 303 (551)
-.|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3699999999999999999999999999987653
No 467
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.94 E-value=0.11 Score=45.75 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 104 LIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 104 VvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
|+|||+|.-|...|..|.+.|++|.++.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence 68999999999999999999999999976
No 468
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=94.81 E-value=0.16 Score=53.69 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=25.5
Q ss_pred eEEEECCChhHHHHHHHHHhCC---CeEEEEccc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALG---SEVTFIEAL 301 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g---~~Vtlv~~~ 301 (551)
+|+|||||..|.-.|..|++.+ .+|++++..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 5899999999999999999988 889998754
No 469
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.1 Score=51.22 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=69.8
Q ss_pred CceEEEECCChhHHHHHHHHHhCCCeEEEEccc--CcCC------------CCCCHHHHHHHHHHHhCCCceEEEeceEE
Q 008850 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL--DQLM------------PGFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (551)
Q Consensus 269 ~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~l------------~~~~~~~~~~~~~~l~~~~gi~~~~~~~~ 334 (551)
+-.|+|||||+.|...|.+-++.|.+.-++..+ .+.+ ....+.+...++++.++ +.|.++...+.
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~-Y~vDimn~qra 289 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQ-YDVDVMNLQRA 289 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhh-cCchhhhhhhh
Confidence 468999999999999999999888665443211 0111 12457788888888876 88888766554
Q ss_pred E------eCCCcEEEEEecccCCCCCeEEecCEEEEeecCCC
Q 008850 335 T------KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 370 (551)
Q Consensus 335 ~------~~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 370 (551)
+ ..++...|++.+| -.+.+..+|++||.+=
T Consensus 290 ~~l~~a~~~~~l~ev~l~nG------avLkaktvIlstGArW 325 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANG------AVLKARTVILATGARW 325 (520)
T ss_pred hcceecCCCCccEEEEecCC------ceeccceEEEecCcch
Confidence 4 3466788999887 6899999999999764
No 470
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.39 E-value=0.33 Score=51.46 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
.+|+|+|.|.+|+++|..|++.|++|++.|+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECC
Confidence 4799999999999999999999999999996
No 471
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.37 E-value=0.059 Score=55.94 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=32.4
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 99 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
..+|||||+|.|..-.-.|..|.+.|.+|+-+|+ +-.||.|.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a 44 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA 44 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence 4579999999999999999999999999999999 67888876
No 472
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.34 E-value=0.052 Score=57.60 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=36.2
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCC
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG 307 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~ 307 (551)
..++|+|||+|.+|+-.|..|.+.|.+|++++.++++..+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 3579999999999999999999999999999999887543
No 473
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.26 E-value=0.43 Score=50.24 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHHhCC-CeEEEEcccCc
Q 008850 272 IAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQ 303 (551)
Q Consensus 272 v~VvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~ 303 (551)
|+|||+|..|+-.|..+++.| .+|+++++.+.
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 899999999999999999999 99999987543
No 474
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.26 E-value=0.21 Score=51.06 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.8
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcc
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEA 300 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~ 300 (551)
-.|+|||||..|+|.|...++.|.+.++++.
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 3699999999999999999999998888754
No 475
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.18 E-value=0.043 Score=55.04 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHc----CCcEEEeeCC
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEK----GLKTAIIEGD 133 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~----g~~V~liE~~ 133 (551)
..|||||+||||.|++.|..|... .++|.|+|-.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 369999999999999999998853 4789999963
No 476
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.05 E-value=0.21 Score=49.73 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=57.1
Q ss_pred eEEEECCChhHHHHHHHHHhC--CCeEEEEcccCcCCCC-------CCH---HHHHHHHHHHhCCCceEEEeceEEEeCC
Q 008850 271 WIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQLMPG-------FDP---EIGKLAQRVLINPRKIDYHTGVFATKDG 338 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~-------~~~---~~~~~~~~~l~~~~gi~~~~~~~~~~~~ 338 (551)
+|.|||+|+.|+-.|..|.+. +.+|+++++.+.+... -.+ .......+.++. ....+..+..+-.
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~-~rfsf~gNv~vG~-- 98 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEH-ERFSFFGNVKVGR-- 98 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhc-cceEEEecceecc--
Confidence 899999999999999998884 6899999988865432 112 233344555554 6677777755421
Q ss_pred CcEEEEEecccCCCCCeEEecCEEEEeecCCC
Q 008850 339 KPVTIELIDAKTKEPKDTLEVDAALIATGRAP 370 (551)
Q Consensus 339 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 370 (551)
.+.+.+ -+-.+|.|++|.|..-
T Consensus 99 ---dvsl~e-------L~~~ydavvLaYGa~~ 120 (468)
T KOG1800|consen 99 ---DVSLKE-------LTDNYDAVVLAYGADG 120 (468)
T ss_pred ---cccHHH-------HhhcccEEEEEecCCC
Confidence 122221 2345788888888643
No 477
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.18 Score=53.37 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=55.8
Q ss_pred CCceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceEEEeCCCcEEEEEec
Q 008850 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKDGKPVTIELID 347 (551)
Q Consensus 268 ~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~v~~~~ 347 (551)
.+|+++|+|+|.+|+.+|..|++.|.+|+++++.+. ....+.+. .+.+ .|++++.+.... .
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~~~~~~-~l~~-~~~~~~~~~~~~--------~--- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQLKEALE-ELGE-LGIELVLGEYPE--------E--- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHHHHHHH-HHHh-cCCEEEeCCcch--------h---
Confidence 368999999999999999999999999999987541 12222222 3443 577655442110 0
Q ss_pred ccCCCCCeEEecCEEEEeecCCCCCCC
Q 008850 348 AKTKEPKDTLEVDAALIATGRAPFTNG 374 (551)
Q Consensus 348 g~~~~~~~~i~~D~vi~a~G~~p~~~~ 374 (551)
..-.+|.||.++|..|+.+.
T Consensus 65 -------~~~~~d~vv~~~g~~~~~~~ 84 (450)
T PRK14106 65 -------FLEGVDLVVVSPGVPLDSPP 84 (450)
T ss_pred -------HhhcCCEEEECCCCCCCCHH
Confidence 11247999999998877653
No 478
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.99 E-value=0.29 Score=51.67 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
..++|+|+|..|+++|..|++.|++|++.|+
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~ 36 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDG 36 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcC
Confidence 4799999999999999999999999999986
No 479
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.92 E-value=0.11 Score=48.93 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=56.2
Q ss_pred eEEEECCChhHHHHHHHHHhC--CCeEEEEcccCcCCCCCCHHHHHHHHHHHhCCCceEEEeceE-----------EE-e
Q 008850 271 WIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF-----------AT-K 336 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~~gi~~~~~~~-----------~~-~ 336 (551)
+.+|||||..|+.+|..|+.+ ..+|.+++.++-+-. -..-..+.+++++ ..|+-...+. ++ -
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks---vtn~~~i~~ylek-fdv~eq~~~elg~~f~~~~~~v~~~ 76 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS---VTNYQKIGQYLEK-FDVKEQNCHELGPDFRRFLNDVVTW 76 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH---HhhHHHHHHHHHh-cCccccchhhhcccHHHHHHhhhhh
Confidence 368999999999999999876 468888886653211 0011122333332 2222111000 11 2
Q ss_pred CCCcEEEEEecccCCCCCeEEecCEEEEeecCCCCCC
Q 008850 337 DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 373 (551)
Q Consensus 337 ~~~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 373 (551)
+...-.+++.+| .++.++.+++|+|++|...
T Consensus 77 ~s~ehci~t~~g------~~~ky~kKOG~tg~kPklq 107 (334)
T KOG2755|consen 77 DSSEHCIHTQNG------EKLKYFKLCLCTGYKPKLQ 107 (334)
T ss_pred ccccceEEecCC------ceeeEEEEEEecCCCccee
Confidence 223345666666 7899999999999999754
No 480
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.84 E-value=0.072 Score=47.38 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
+|.|||||..|.++|..|++.|++|.|+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 4899999999999999999999999999874
No 481
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.076 Score=55.19 Aligned_cols=37 Identities=35% Similarity=0.414 Sum_probs=34.3
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP 306 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 306 (551)
+||+|+|+|..|+-.|.+|++.|.+||++++++++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 5899999999999999999999999999999987643
No 482
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=93.62 E-value=0.083 Score=55.80 Aligned_cols=36 Identities=33% Similarity=0.513 Sum_probs=32.4
Q ss_pred ceEEEECCChhHHHHHHHHHhCC--CeEEEEcccCcCC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLM 305 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~l 305 (551)
++|+|||+|.+|+-.|..|++.| .+|++++.++++-
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 57999999999999999999987 8999999887654
No 483
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.60 E-value=0.23 Score=48.84 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=65.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCCccCcccccCCccCChhhHhhHHHHHHHHhhhhhhhcCccccccccCH
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (551)
..+++|||||..++..|--++-+|.++-|+=|.+ +.
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-------------kv------------------------------- 224 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-------------KV------------------------------- 224 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-------------hh-------------------------------
Confidence 4689999999999999999999999988886521 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCeEEEeceEEE-----eCC-cEEEeCcceEEEeCeEEEeCCCCCCCCC
Q 008850 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI-----LGP-QKVKFGTDNIVTAKDIIIATGSVPFVPK 247 (551)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~-~~v~~~~g~~i~~d~lVlAtG~~p~~p~ 247 (551)
++.+-+.++..+.+.++..||+++..+... .+. ..+.+..+.....|.|+.|+|-.|..-.
T Consensus 225 ------LR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 225 ------LRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred ------hcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc
Confidence 001113445556667777899988775321 111 2333344444569999999998887543
No 484
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.58 E-value=0.073 Score=51.82 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 102 ~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
..|-|||||-||-.||.+++++|.+|.|+|-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EM 34 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEM 34 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEc
Confidence 4699999999999999999999999999995
No 485
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.50 E-value=0.062 Score=43.98 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
..+|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 368999999999999999999999999999874
No 486
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.49 E-value=0.093 Score=49.70 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEeeCC
Q 008850 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (551)
Q Consensus 103 dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~ 133 (551)
+++|||+|..|.+.|..|.+.|++|++||++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 6999999999999999999999999999984
No 487
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.44 E-value=0.073 Score=55.41 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHcCCcEEEeeC-CccCcccc
Q 008850 111 VGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (551)
Q Consensus 111 ~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~ 140 (551)
.|||+||.+|++.|++|+|+|+ +.+||.+.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceE
Confidence 4899999999999999999999 89999876
No 488
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=93.41 E-value=0.095 Score=55.71 Aligned_cols=40 Identities=33% Similarity=0.446 Sum_probs=35.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeCCc---cCccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV---VGGTC 139 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~~~---~GG~~ 139 (551)
.++||||||+|++|++||++|++.|.+|+||||.. .||..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNS 45 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence 45899999999999999999999999999999943 56643
No 489
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=93.36 E-value=0.1 Score=54.46 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=31.1
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 302 (551)
++|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999875
No 490
>PLN02268 probable polyamine oxidase
Probab=93.21 E-value=0.11 Score=54.70 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=33.6
Q ss_pred ceEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCCC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP 306 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 306 (551)
.+|+|||+|.+|+-.|..|.+.|.+|++++.++++-.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 3799999999999999999999999999999887654
No 491
>PRK07233 hypothetical protein; Provisional
Probab=93.16 E-value=0.1 Score=54.70 Aligned_cols=35 Identities=49% Similarity=0.495 Sum_probs=32.3
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccCcCC
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM 305 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l 305 (551)
+|+|||+|.+|+-.|..|++.|.+|+++++.+++-
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 58999999999999999999999999999987654
No 492
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=93.09 E-value=0.71 Score=46.19 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.9
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
.|+|||+|..|.-+|..|.+.|.+|++++|.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4999999999999999999999999999975
No 493
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.09 E-value=0.09 Score=43.01 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=30.8
Q ss_pred cCCceEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 267 ~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
-.+++|+|||+|..|..-+..|.+.|.+|+++...
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 35789999999999999999999999999999865
No 494
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.05 E-value=0.39 Score=44.71 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=31.5
Q ss_pred cCCceEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 267 ~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
..+++|+|||||.+|..-+..|.+.|.+|+++...
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34689999999999999999999999999999743
No 495
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.00 E-value=0.26 Score=49.58 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=39.1
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEcccC--------cCCCCCCHHHHHHHHHHH
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD--------QLMPGFDPEIGKLAQRVL 320 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~--------~~l~~~~~~~~~~~~~~l 320 (551)
++.|+|.|++|+-.+.-|++.|++|+.++..+ ...|-++|.+.+.+++..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~ 59 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL 59 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc
Confidence 68999999999999999999999999987543 234456666666665444
No 496
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.85 E-value=0.14 Score=51.87 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=29.6
Q ss_pred eEEEECCChhHHHHHHHHHhCCCeEEEEccc
Q 008850 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (551)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 301 (551)
.|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999987
No 497
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.75 E-value=0.17 Score=44.94 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEeeC
Q 008850 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (551)
Q Consensus 101 ~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~ 132 (551)
..+|+|||||..|..-+..|.+.|++|+||++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 36899999999999999999999999999965
No 498
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.69 E-value=1.5 Score=45.58 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.2
Q ss_pred ceEEEECCChhHHHHHHHHHhCC---CeEEEEcccCcC
Q 008850 270 DWIAIVGSGYIGLEFSDVYTALG---SEVTFIEALDQL 304 (551)
Q Consensus 270 k~v~VvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~~ 304 (551)
++|+|||+|.+|+.+|.+|.+.- ..|++++..+.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 57999999999999999998752 238888876554
No 499
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=92.67 E-value=0.14 Score=55.09 Aligned_cols=41 Identities=37% Similarity=0.668 Sum_probs=35.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCcEEEeeC-CccCccccc
Q 008850 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (551)
Q Consensus 100 ~~~dVvIIGgG~AGl~aA~~l~~~g~~V~liE~-~~~GG~~~~ 141 (551)
.++||||||+| +|++||+++++.|.+|+|||| ...||....
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~ 47 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY 47 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence 46899999999 999999999999999999999 556776543
No 500
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.66 E-value=0.2 Score=44.44 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=30.5
Q ss_pred cCCceEEEECCChhHHHHHHHHHhCCCeEEEEc
Q 008850 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE 299 (551)
Q Consensus 267 ~~~k~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~ 299 (551)
-.+++|+|||||.+|...+..|.+.|.+|+++.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 347999999999999999999999999999994
Done!