Your job contains 1 sequence.
>008851
MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGE
SVHHQPIGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPNDPLTLHLAKMSRNQL
NEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQVLQMPILRQGPGHPA
QPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQPTLHPQIQLPQNAK
NQALQQASLPGQSGIPMLPSMHPSVRPQIQLANSSSLNQQVHPPSLENQVQVSASNLGQN
TWTKLPNSAMRSSFLPHPPSSDAGFQPGPSTSAGIGQTVSRDAERSARVPEDGTRAHRNN
AYTNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFG
AGLVPVNQVPKVEEVQYSEKQIPQISPDVESALLQQVLSLTPEQLNSLPPEQRQQVIQLQ
QALLRDQMQPS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008851
(551 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2013016 - symbol:CSTF64 "cleavage stimulating ... 799 1.6e-79 1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 332 9.8e-40 3
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 317 4.4e-39 3
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 333 1.2e-37 3
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 333 1.7e-37 4
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"... 332 2.9e-37 3
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac... 308 3.4e-37 3
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"... 332 4.0e-37 3
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 333 1.2e-36 3
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 333 1.3e-36 2
UNIPROTKB|F1MVI1 - symbol:CSTF2 "Cleavage stimulation fac... 333 1.8e-36 3
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 333 1.9e-36 3
MGI|MGI:1343054 - symbol:Cstf2 "cleavage stimulation fact... 332 2.5e-36 3
UNIPROTKB|I3LE23 - symbol:LOC100515986 "Uncharacterized p... 333 3.0e-36 3
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"... 333 3.4e-36 3
UNIPROTKB|G1K177 - symbol:CSTF2 "Cleavage stimulation fac... 333 4.7e-36 3
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac... 333 1.1e-35 3
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac... 333 1.1e-35 3
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 322 1.3e-35 3
UNIPROTKB|E7EWR4 - symbol:CSTF2 "Cleavage stimulation fac... 333 1.8e-35 3
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 317 9.1e-35 3
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 317 1.2e-34 4
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 317 2.0e-34 3
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 317 2.3e-34 3
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 317 3.0e-34 3
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 317 4.6e-34 3
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 333 3.1e-33 2
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 260 3.1e-28 2
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 299 4.9e-26 1
ASPGD|ASPL0000005213 - symbol:AN6074 species:162425 "Emer... 235 1.2e-25 2
POMBASE|SPBC3B9.11c - symbol:ctf1 "mRNA cleavage and poly... 240 2.0e-25 3
POMBASE|SPAC644.16 - symbol:SPAC644.16 "RNA-binding prote... 281 4.1e-25 2
SGD|S000003012 - symbol:RNA15 "Component of the cleavage ... 225 1.4e-22 2
DICTYBASE|DDB_G0280529 - symbol:cstf2 "cleavage stimulati... 240 3.0e-21 3
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 222 5.6e-21 2
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 185 1.4e-13 1
CGD|CAL0002731 - symbol:orf19.4538 species:5476 "Candida ... 185 1.7e-13 2
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 184 1.8e-13 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 184 1.8e-13 1
TAIR|locus:2027829 - symbol:ESP1 "AT1G73840" species:3702... 146 2.9e-13 2
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 176 1.4e-12 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 172 3.7e-12 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 172 3.7e-12 1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ... 165 2.1e-11 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 187 2.4e-11 1
UNIPROTKB|Q3AF33 - symbol:CHY_0389 "RNA-binding protein" ... 164 2.7e-11 1
TIGR_CMR|CHY_0389 - symbol:CHY_0389 "RNA-binding protein"... 164 2.7e-11 1
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein... 161 5.7e-11 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 160 7.3e-11 1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 141 9.1e-11 2
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 141 9.1e-11 2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 157 1.5e-10 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 157 1.5e-10 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 155 2.5e-10 1
POMBASE|SPBC13A2.01c - symbol:SPBC13A2.01c "nuclear cap-b... 155 2.5e-10 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 155 2.5e-10 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 154 3.2e-10 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 154 3.2e-10 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 154 3.2e-10 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 154 3.2e-10 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 154 3.2e-10 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 154 3.2e-10 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 154 3.2e-10 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 154 3.2e-10 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 154 3.2e-10 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 154 3.2e-10 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 153 4.1e-10 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 153 4.1e-10 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 153 4.1e-10 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 165 7.1e-10 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 154 1.3e-09 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 148 1.4e-09 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 170 1.5e-09 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 147 1.8e-09 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 147 1.8e-09 1
MGI|MGI:1919414 - symbol:Rbmx2 "RNA binding motif protein... 165 2.1e-09 1
FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ... 146 2.4e-09 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 146 2.4e-09 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 146 2.4e-09 1
DICTYBASE|DDB_G0279639 - symbol:DDB_G0279639 "RNA-binding... 137 2.6e-09 2
UNIPROTKB|Q9Y388 - symbol:RBMX2 "RNA-binding motif protei... 164 2.7e-09 1
UNIPROTKB|F1PRG0 - symbol:RBMX2 "Uncharacterized protein"... 164 2.8e-09 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 133 2.8e-09 2
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 133 3.0e-09 2
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 145 3.0e-09 1
UNIPROTKB|J9P250 - symbol:RBMX2 "Uncharacterized protein"... 164 3.2e-09 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 144 3.9e-09 1
TAIR|locus:2075676 - symbol:AT3G47120 species:3702 "Arabi... 163 4.5e-09 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 143 5.0e-09 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 161 5.1e-09 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 160 5.2e-09 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 133 5.5e-09 2
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 158 5.7e-09 1
UNIPROTKB|F1LMQ9 - symbol:Rbmx2 "RNA-binding motif protei... 161 6.1e-09 1
RGD|1562693 - symbol:Rbmx2 "RNA binding motif protein, X-... 161 6.2e-09 1
UNIPROTKB|G3X6K3 - symbol:LOC534630 "Uncharacterized prot... 161 6.3e-09 1
UNIPROTKB|G5E5I0 - symbol:RBMX2 "Uncharacterized protein"... 161 6.7e-09 1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 141 8.1e-09 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 141 8.1e-09 1
DICTYBASE|DDB_G0286007 - symbol:rbm8A "RNA-binding motif ... 140 1.0e-08 1
WARNING: Descriptions of 706 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 179/357 (50%), Positives = 219/357 (61%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
+SSQ RCVFVGNIPYDATEEQL EIC EVGPVVSFRLV DRETGKPKGYGFCEYKDEETA
Sbjct: 4 SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAA---IVDPQKQLGGPAIH 118
LSARRNLQ YEINGRQLRVDFAENDKG D+ R+Q +GGPG+ + + + QKQ+GGP
Sbjct: 64 LSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGGPV-- 121
Query: 119 GESVHHQPIGLHIAIXXXXXXXXXXXXXQVGVQSNQNGIQSQLASPNDPLTLHLAKMSRN 178
+S HQP+GLH+A QVG Q Q+ +Q +DPL LHLAKMSR+
Sbjct: 122 -DSNMHQPVGLHLATTAASVIAGALGGPQVGSQFTQSNLQ---VPASDPLALHLAKMSRS 177
Query: 179 QLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIMLGMATPQVLQMPILRQGPGH 238
QL EI+S +KLMATQNKE ARQ F AQ+MLG+ +PQVLQ P + Q P H
Sbjct: 178 QLTEIISSIKLMATQNKEHARQLLVSRPQLLKAVFLAQVMLGIVSPQVLQSPNIVQAPSH 237
Query: 239 PAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQPTLHPQIQLPQN 298
QD Q L LPPLAQ+ Q + + H+Q+ Q + P Q+PQ
Sbjct: 238 MTGSSIQDAQLSGQNL--LPPLAQRSQQLSRAP------HSQYPVQ-QSSKQPFSQIPQL 288
Query: 299 AKNQALQQASLPGQSGIPM--LPSMHPSVRP---QIQLANSSSL-NQQVHPPSLENQ 349
+ P +S + + P V P I ++ +S+ N + P + +Q
Sbjct: 289 VAQPGPSSVNPPPRSQVKVENAPFQRQQVVPASTNIGYSSQNSVPNNAIQPSQVPHQ 345
Score = 144 (55.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 84/320 (26%), Positives = 132/320 (41%)
Query: 249 QQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQPTLHPQ---IQLPQNAKNQALQ 305
Q Q+P PLA + M + Q +I + + ATQ H + + PQ K L
Sbjct: 156 QSNLQVPASDPLALHLAKMSRSQLTEI-ISSIKLMATQNKEHARQLLVSRPQLLKAVFLA 214
Query: 306 QASLPGQSGIPMLPSMHPSVRPQIQLANSSSLNQQVHPPSLENQVQVSASNLGQNTWTKL 365
Q L G +L S + P + SS + Q+ +L + + L + ++
Sbjct: 215 QVML-GIVSPQVLQSPNIVQAPS-HMTGSSIQDAQLSGQNLLPPLAQRSQQLSRAPHSQY 272
Query: 366 PNSAMRSSFLPHPPSSDAGFQPGPSTSAGIGQTVSRDAERSARVPEDGTRAHRNNAYTNM 425
P +SS P QPGPS+ V+ +V E+ + +
Sbjct: 273 P--VQQSSKQPFSQIPQLVAQPGPSS-------VNPPPRSQVKV-ENAPFQRQQVVPAST 322
Query: 426 SMGLASKRSTVNDPLD--SISH---PSKIVKTEDGSGTSFSVGA-LNVSKPIGSA--PSQ 477
++G +S+ S N+ + + H P+ +++ + G S + G +N P S PS+
Sbjct: 323 NIGYSSQNSVPNNAIQPSQVPHQALPNSVMQ-QGGQTVSLNFGKRINEGPPHQSMNRPSK 381
Query: 478 AFGAGLVPVNQVP--KVEEVQY-SEKQIPQ--ISPDVESALLQQVLSLTPEQLNSLPPEX 532
+P V ++ Q PQ ISPDV+S LLQQV++LTPEQL L PE
Sbjct: 382 MMKVEDRRTTSLPGGHVSNSMLPNQAQAPQTHISPDVQSTLLQQVMNLTPEQLRLLTPEQ 441
Query: 533 XXXXXXXXXXXXRDQM-QPS 551
+D M QPS
Sbjct: 442 QQEVLKLQQALKQDHMMQPS 461
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 332 (121.9 bits), Expect = 9.8e-40, Sum P(3) = 9.8e-40
Identities = 65/94 (69%), Positives = 74/94 (78%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
Score = 96 (38.9 bits), Expect = 9.8e-40, Sum P(3) = 9.8e-40
Identities = 41/162 (25%), Positives = 65/162 (40%)
Query: 172 LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIMLGMATPQVLQMPI 231
+A + Q+ E+M +MKL + ++AR QAQ+++ + P++ + I
Sbjct: 132 VASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIA-LKI 190
Query: 232 LRQGPGHPAQPLFQDGQQQV-AQLPGLPP-LAQKMQLMPK-VQEAQIQ-LHNQFSAATQP 287
L + P PL QQ V PG P QL P+ +Q Q + P
Sbjct: 191 LHRQTSVP--PLIPGNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQPIGGMHVNGAPP 248
Query: 288 TLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQI 329
+ P +Q A Q PG PM P ++PQ+
Sbjct: 249 LMQPPMQGGVPAPGQMAAAVQGPGPG--PMAPG--GGLQPQV 286
Score = 69 (29.3 bits), Expect = 9.8e-40, Sum P(3) = 9.8e-40
Identities = 31/80 (38%), Positives = 43/80 (53%)
Query: 463 GALNV--SKPIG--SAPSQAFGAGL----VPVNQVPKVEEVQ-YSEKQIPQISP-DVE-S 511
G LN+ S P G P+ A GAG+ +P V + +S Q Q++P D E +
Sbjct: 379 GPLNMGASGPQGPRQVPNMA-GAGMQGGGIPGAGVQGAGQPGGFSPGQ-SQVTPQDHEKA 436
Query: 512 ALLQQVLSLTPEQLNSLPPE 531
AL+ QVL LT +Q+ LPPE
Sbjct: 437 ALIMQVLQLTADQIAMLPPE 456
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 317 (116.6 bits), Expect = 4.4e-39, Sum P(3) = 4.4e-39
Identities = 63/94 (67%), Positives = 72/94 (76%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 20 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 79
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G P
Sbjct: 80 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 113
Score = 89 (36.4 bits), Expect = 4.4e-39, Sum P(3) = 4.4e-39
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 157 IQSQLASPNDP------LTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXX 210
+ S P DP +T +A + Q+ E+M +MKL + ++AR
Sbjct: 115 VDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARSMLLQNPQLAY 174
Query: 211 XXFQAQIMLGMATPQVLQMPILRQ---------GPGHPAQPLFQDGQQQVAQLPGLPPL 260
QAQ+++ + P L + IL + GPG A P Q QV +PG+ PL
Sbjct: 175 ALLQAQVVMRIMDPD-LALRILHRKVHGRRCWPGPGPAALPAAGGMQPQVG-MPGVGPL 231
Score = 69 (29.3 bits), Expect = 4.4e-39, Sum P(3) = 4.4e-39
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 472 GSAPSQAFGAGLVPVNQVPKVEEVQYSEKQIPQISP-DVE-SALLQQVLSLTPEQLNSLP 529
G P GAG P Q P+ + +S Q Q++P D E +AL+ QVL LT +Q+ LP
Sbjct: 361 GPGPIN-MGAG-GP--QGPR-QPSSFSPGQ-SQVTPQDQEKAALIMQVLQLTADQIAMLP 414
Query: 530 PE 531
PE
Sbjct: 415 PE 416
Score = 43 (20.2 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 307 ASLPGQSGI-PM--LPSMHPSVRPQIQLAN 333
A+LP G+ P +P + P R Q+Q+A+
Sbjct: 211 AALPAAGGMQPQVGMPGVGPLERGQVQMAD 240
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 333 (122.3 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 94 (38.1 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 40/171 (23%), Positives = 65/171 (38%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQ-SLS 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGI-PMLPSMHPSVRPQ 328
P + +Q A Q + PG + P +P P Q
Sbjct: 236 GMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSLAPGVPMQDPRAAMQ 286
Score = 67 (28.6 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 503 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 532
Score = 49 (22.3 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 20/73 (27%), Positives = 30/73 (41%)
Query: 190 MATQNKE--QARQXXXXXXXXXXXXFQAQIMLGMATPQVLQMPILRQGPGH--PAQPLFQ 245
M QN + QA+ QA + G+A P + + GPG P P+ Q
Sbjct: 221 MNQQNPQAPQAQSLSGMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSLAPGVPM-Q 279
Query: 246 DGQQQVAQLPGLP 258
D + + + P LP
Sbjct: 280 DPRAAMQRGP-LP 291
Score = 45 (20.9 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 433 RSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAGLVPVNQ 488
R T N P +P + T GSG++ S+ N P + S G P+ Q
Sbjct: 193 RQT-NIPTLIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQSLSGMHVNGAPPLMQ 247
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 333 (122.3 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 77 (32.2 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 29/116 (25%), Positives = 49/116 (42%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQ 274
+ P++ + IL + P L Q V PG Q P+ +AQ
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQ 232
Score = 67 (28.6 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 507 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 536
Score = 65 (27.9 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 214 QAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEA 273
QAQ + G+A P Q+P GPG P G Q +PG P++ + +P +Q+
Sbjct: 230 QAQSLAGVAAPG--QIPATVTGPG-PGSLAPGGGMQAQVGMPGSGPVSMERGQVP-MQDP 285
Query: 274 QIQLHNQFSAATQPT 288
+ + A PT
Sbjct: 286 RAAMQRGPLPANVPT 300
Score = 48 (22.0 bits), Expect = 8.4e-33, Sum P(3) = 8.4e-33
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 433 RSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAGLVPVNQVP 490
R T N P +P + T GSG++ S +N P AP AG+ Q+P
Sbjct: 193 RQT-NIPTLIAGNPQTVHSTGPGSGSNVS---MNQQNP--QAPQAQSLAGVAAPGQIP 244
Score = 44 (20.5 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 423 TNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGT-SFSVGA---LNVSKPIGSAPSQA 478
+N+SM + ++ L ++ P +I T G G S + G V P GS P +
Sbjct: 217 SNVSMNQQNPQAPQAQSLAGVAAPGQIPATVTGPGPGSLAPGGGMQAQVGMP-GSGPV-S 274
Query: 479 FGAGLVPVNQVPK 491
G VP+ Q P+
Sbjct: 275 MERGQVPM-QDPR 286
Score = 39 (18.8 bits), Expect = 7.2e-32, Sum P(3) = 7.2e-32
Identities = 25/106 (23%), Positives = 45/106 (42%)
Query: 296 PQNAKNQALQQASLPG---QSGIPMLPSMHPSVRPQIQLANSSSLNQQV--HPPSLENQV 350
PQ A+N LQ L Q+ + M + P + +I L +++ + +P ++ +
Sbjct: 155 PQEARNMLLQNPQLAYALLQAQVVMR-IVDPEIALKI-LHRQTNIPTLIAGNPQTVHSTG 212
Query: 351 QVSASNLGQNTWTKLPNSAMRSSFLPHP---PSSDAGFQPGPSTSA 393
S SN+ N A + + P P++ G PGP + A
Sbjct: 213 PGSGSNVSMNQQNPQAPQAQSLAGVAAPGQIPATVTG--PGPGSLA 256
Score = 37 (18.1 bits), Expect = 9.2e-37, Sum P(4) = 9.2e-37
Identities = 28/113 (24%), Positives = 41/113 (36%)
Query: 298 NAKN-QALQQASLPGQSGIPMLPSMHPSVRPQIQLANSSSLNQQVHPPSLENQVQVSASN 356
N +N QA Q SL G + +P+ P LA + QV P V +
Sbjct: 222 NQQNPQAPQAQSLAGVAAPGQIPATVTGPGPG-SLAPGGGMQAQVGMPG-SGPVSMERGQ 279
Query: 357 LGQNTWTKLPNSAMRSSFLP-HPPSSDAGFQPGPSTSAGIGQTVSRDAERSAR 408
+ P +AM+ LP + P+ P+ G G +S E R
Sbjct: 280 VPMQD----PRAAMQRGPLPANVPTPRGLLGDAPNDPRG-GTLLSVTGEVEPR 327
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 332 (121.9 bits), Expect = 2.9e-37, Sum P(3) = 2.9e-37
Identities = 65/94 (69%), Positives = 74/94 (78%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
Score = 96 (38.9 bits), Expect = 2.9e-37, Sum P(3) = 2.9e-37
Identities = 41/162 (25%), Positives = 65/162 (40%)
Query: 172 LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIMLGMATPQVLQMPI 231
+A + Q+ E+M +MKL + ++AR QAQ+++ + P++ + I
Sbjct: 132 VASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIA-LKI 190
Query: 232 LRQGPGHPAQPLFQDGQQQV-AQLPGLPP-LAQKMQLMPK-VQEAQIQ-LHNQFSAATQP 287
L + P PL QQ V PG P QL P+ +Q Q + P
Sbjct: 191 LHRQTSVP--PLIPGNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQPIGGMHVNGAPP 248
Query: 288 TLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQI 329
+ P +Q A Q PG PM P ++PQ+
Sbjct: 249 LMQPPMQGGVPAPGQMAAAVQGPGPG--PMAPG--GGLQPQV 286
Score = 67 (28.6 bits), Expect = 2.9e-37, Sum P(3) = 2.9e-37
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 545 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 574
Score = 56 (24.8 bits), Expect = 7.2e-35, Sum P(4) = 7.2e-35
Identities = 42/186 (22%), Positives = 71/186 (38%)
Query: 237 GHPAQPLFQDGQQQVAQLP-GLPPLAQKMQ-LMPKVQEAQIQLHNQFSAATQPT-LHPQI 293
G P PL + V + P GL P + + L P+V EA+ +P + P++
Sbjct: 388 GEPRGPLMD--ARGVGRDPRGLEPRGLEPRGLEPRVMEAR---------GLEPRGMEPRV 436
Query: 294 QLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANSSSLNQQVHPPSLENQVQVS 353
P+ + +A++ + + P P +P + LN P QVQ+
Sbjct: 437 LEPRVLEARAMEARVMESRGLEPRGPGPNPRGPMAGGIQGPGPLNMGASGPQGPRQVQLC 496
Query: 354 ASNLGQNTWTKLPNSAMRSSFLPHPPSSDAGFQPGPSTSAGI---GQTVSRDAERSARVP 410
++ + + L P P + AG Q G AG+ GQ +S P
Sbjct: 497 VADCALMSSSPL--------LYPVPNMAGAGMQGGGIPGAGVQGAGQPGGFSPGQSQVTP 548
Query: 411 EDGTRA 416
+D +A
Sbjct: 549 QDHEKA 554
Score = 46 (21.3 bits), Expect = 7.2e-35, Sum P(4) = 7.2e-35
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 97 RGGPGMAAI--VDPQKQLGGPAIHGESVHHQP 126
RGG ++ V+P+ LG P G +HH P
Sbjct: 334 RGGTLLSVTGDVEPRGYLGPPH-QGAPMHHMP 364
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 308 (113.5 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 60/81 (74%), Positives = 68/81 (83%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEE+L EI EVGPV+S +LV DRE+GKPKG+GFCEYKD+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDK 87
NL GYEI GR LRVD A +K
Sbjct: 76 NLNGYEIGGRTLRVDNACTEK 96
Score = 108 (43.1 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 64/258 (24%), Positives = 98/258 (37%)
Query: 168 LTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIMLGMATPQVL 227
+T +A + Q+ E+M +MKL N +ARQ QA +++ + PQ
Sbjct: 127 ITKTVASLPPEQMYELMKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQA 186
Query: 228 QMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQP 287
+ +L + P P+ Q PG + + Q V + Q+Q+ Q A QP
Sbjct: 187 -LGMLFKANQMP--PVLGGNPHQG---PGNHTMMGQQQ----VPQQQVQIPQQQQQAPQP 236
Query: 288 TLH-PQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANSSSLNQQVHPPSL 346
+ P P N + +PG +PM P M Q A SL V PP +
Sbjct: 237 PMPVPGPGFPANVHPNDIDLRMVPG-GPMPMDPRMMGRGMDQDLRA---SLPNPVPPPLM 292
Query: 347 ENQVQVSASNLGQNTWTKLPNSAMRSSFLPHP--PSSDAGFQPGPSTSA---GIGQTVSR 401
+ + + Q + P + S P P AG PGP A GI Q
Sbjct: 293 DPRARAQMPPQQQQGVPQAPPAPYPSDPRQRPMDPRLRAG--PGPQQQAPPQGIPQAPPP 350
Query: 402 DAERSARVPEDGTR--AH 417
++ A + +R AH
Sbjct: 351 TQQQQAAAQQLQSRLGAH 368
Score = 65 (27.9 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
Identities = 48/200 (24%), Positives = 77/200 (38%)
Query: 221 MATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQ-LPGLPPLAQKMQLMPKVQEAQIQLHN 279
M Q+LQ P + G P +P +D + + + + LPP Q +LM +++ + N
Sbjct: 99 MEMQQLLQGPQVENPYGEPCEP--EDAPELITKTVASLPP-EQMYELMKQMKLCIVS--N 153
Query: 280 QFSAATQPTLHPQIQLPQNAKNQALQQASL--PGQS-GIPMLPSMHPSV---RPQIQLAN 333
A L+PQ+ A QA+ + P Q+ G+ + P V P N
Sbjct: 154 PSEARQMLMLNPQLAY---ALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNPHQGPGN 210
Query: 334 SSSLNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSSFLPHPPSSDAGFQPG---PS 390
+ + QQ P + QVQ+ Q +P HP D PG P
Sbjct: 211 HTMMGQQQVP---QQQVQIPQQQQ-QAPQPPMPVPGPGFPANVHPNDIDLRMVPGGPMPM 266
Query: 391 TSAGIGQTVSRDAERSARVP 410
+G+ + +D S P
Sbjct: 267 DPRMMGRGMDQDLRASLPNP 286
Score = 59 (25.8 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 502 IPQISPDVE-SALLQQVLSLTPEQLNSLPPE 531
+P + D E +AL+ QVL L+ EQ+ LP E
Sbjct: 371 LPSDASDQEKAALIMQVLQLSDEQIAQLPSE 401
Score = 50 (22.7 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 488 QVPKVEEVQYSEKQIPQISPDVESALLQQVLSLTPEQLNSL 528
Q P+VE Y E P+ +P++ + + V SL PEQ+ L
Sbjct: 106 QGPQVEN-PYGEPCEPEDAPEL---ITKTVASLPPEQMYEL 142
Score = 39 (18.8 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 168 LTLHLAKMSRNQLNEIMSEMKLMATQNKEQ 197
L + + ++S Q+ ++ SE ++ KEQ
Sbjct: 383 LIMQVLQLSDEQIAQLPSEQRVSIVMLKEQ 412
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 332 (121.9 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 65/94 (69%), Positives = 74/94 (78%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
Score = 96 (38.9 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 41/162 (25%), Positives = 65/162 (40%)
Query: 172 LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIMLGMATPQVLQMPI 231
+A + Q+ E+M +MKL + ++AR QAQ+++ + P++ + I
Sbjct: 132 VASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIA-LKI 190
Query: 232 LRQGPGHPAQPLFQDGQQQV-AQLPGLPP-LAQKMQLMPK-VQEAQIQ-LHNQFSAATQP 287
L + P PL QQ V PG P QL P+ +Q Q + P
Sbjct: 191 LHRQTSVP--PLIPGNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQPIGGMHVNGAPP 248
Query: 288 TLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQI 329
+ P +Q A Q PG PM P ++PQ+
Sbjct: 249 LMQPPMQGGVPAPGQMAAAVQGPGPG--PMAPG--GGLQPQV 286
Score = 67 (28.6 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 560 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 589
Score = 46 (21.3 bits), Expect = 6.2e-32, Sum P(3) = 6.2e-32
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 97 RGGPGMAAI--VDPQKQLGGPAIHGESVHHQP 126
RGG ++ V+P+ LG P G +HH P
Sbjct: 334 RGGTLLSVTGDVEPRGYLGPPH-QGAPMHHMP 364
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 333 (122.3 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 87 (35.7 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 38/167 (22%), Positives = 62/167 (37%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQTVHSAGPGSGSSVSMNQQNPQTPQAQT-LS 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSV 325
P + +Q A Q + PG + M V
Sbjct: 236 GMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSLAPAGGMQAQV 282
Score = 67 (28.6 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 524 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 553
Score = 42 (19.8 bits), Expect = 5.5e-32, Sum P(3) = 5.5e-32
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 433 RSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAGLVPVNQ 488
R T N P +P + GSG+S S+ N P S G P+ Q
Sbjct: 193 RQT-NIPTLIAGNPQTVHSAGPGSGSSVSMNQQNPQTPQAQTLSGMHVNGAPPLMQ 247
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 333 (122.3 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 82 (33.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 45/182 (24%), Positives = 70/182 (38%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQ---- 274
+ P++ + IL + P L Q V PG Q P+ +AQ
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGG 236
Query: 275 IQLHNQFSAA-TQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLAN 333
+ Q AA T P P P QA Q +PG + M P P+ +
Sbjct: 237 VPAPGQMPAAVTGPG--PGSLAPGGGM-QA--QVGMPGSGPVSMERGQVPMQDPRAAMQR 291
Query: 334 SS 335
S
Sbjct: 292 GS 293
Score = 38 (18.4 bits), Expect = 5.4e-32, Sum P(2) = 5.4e-32
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 294 QLPQNAKNQALQQASLPGQSGIP 316
Q+P A+Q+ SLP P
Sbjct: 279 QVPMQDPRAAMQRGSLPANVPTP 301
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 333 (122.3 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 87 (35.7 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 38/167 (22%), Positives = 62/167 (37%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQTVHSAGPGSGSSVSMNQQNPQTPQAQT-LS 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSV 325
P + +Q A Q + PG + M V
Sbjct: 236 GMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSLAPAGGMQAQV 282
Score = 73 (30.8 bits), Expect = 5.3e-35, Sum P(3) = 5.3e-35
Identities = 29/103 (28%), Positives = 43/103 (41%)
Query: 214 QAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEA 273
QA + G+A P Q+P GPG P G Q +PG P++ M + Q
Sbjct: 247 QASLQAGVAAPG--QIPATVTGPG-PGSLAPAGGMQAQVGMPGSGPVS-----MERGQ-G 297
Query: 274 QIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIP 316
+Q H+ T P ++Q+P A+Q+ LP P
Sbjct: 298 TVQ-HSPVGP-TGPASIERVQVPMQDPRAAMQRGPLPANVPTP 338
Score = 67 (28.6 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 544 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 573
Score = 42 (19.8 bits), Expect = 8.7e-32, Sum P(3) = 8.7e-32
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 433 RSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAGLVPVNQ 488
R T N P +P + GSG+S S+ N P S G P+ Q
Sbjct: 193 RQT-NIPTLIAGNPQTVHSAGPGSGSSVSMNQQNPQTPQAQTLSGMHVNGAPPLMQ 247
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 333 (122.3 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 85 (35.0 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 36/157 (22%), Positives = 60/157 (38%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQ-SLS 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGI 315
P + +Q A Q + PG +
Sbjct: 236 GMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSL 272
Score = 67 (28.6 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 524 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 553
Score = 45 (20.9 bits), Expect = 2.7e-32, Sum P(3) = 2.7e-32
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 433 RSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAGLVPVNQ 488
R T N P +P + T GSG++ S+ N P + S G P+ Q
Sbjct: 193 RQT-NIPTLIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQSLSGMHVNGAPPLMQ 247
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 332 (121.9 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 65/94 (69%), Positives = 74/94 (78%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP 109
Score = 84 (34.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 30/116 (25%), Positives = 50/116 (43%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQ 274
+ P++ + IL + P L Q V PG P Q P+ +AQ
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LISGNPQPVHVAGPGSGPNVSMNQQNPQAPQAQ 232
Score = 69 (29.3 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 480 GAGLVPVNQVPKVEEVQYSEKQIPQISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
GAG+ + + +S Q Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 509 GAGMQGASMQGGSQPGGFSPGQ-SQVTPQDHEKAALIMQVLQLTADQIAMLPPE 561
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 333 (122.3 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 85 (35.0 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 36/157 (22%), Positives = 60/157 (38%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQ-SLS 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGI 315
P + +Q A Q + PG +
Sbjct: 236 GMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSL 272
Score = 71 (30.1 bits), Expect = 8.5e-35, Sum P(3) = 8.5e-35
Identities = 33/129 (25%), Positives = 51/129 (39%)
Query: 190 MATQNKE--QARQXXXXXXXXXXXXFQAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDG 247
M QN + QA+ QA + G+A P Q+P GPG P G
Sbjct: 221 MNQQNPQAPQAQSLSGMHVNGAPPLMQASLQAGVAAPG--QIPATVTGPG-PGSLAPGGG 277
Query: 248 QQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQA 307
Q +PG P++ M + Q +Q H+ A ++ ++Q+P A+Q+
Sbjct: 278 MQAQVGMPGSGPVS-----MERGQ-GTLQ-HSPVGPAGPASIE-RVQVPMQDPRAAMQRG 329
Query: 308 SLPGQSGIP 316
LP P
Sbjct: 330 PLPANVPTP 338
Score = 67 (28.6 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 544 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 573
Score = 45 (20.9 bits), Expect = 4.2e-32, Sum P(3) = 4.2e-32
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 433 RSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAGLVPVNQ 488
R T N P +P + T GSG++ S+ N P + S G P+ Q
Sbjct: 193 RQT-NIPTLIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQSLSGMHVNGAPPLMQ 247
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 333 (122.3 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 83 (34.3 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 37/167 (22%), Positives = 61/167 (36%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQPVHSAGPGAGSTVSMNQQNPQAPQAQ-SLG 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSV 325
P + +Q Q + PG + M V
Sbjct: 236 GMHVNGAPPLMQASMQSGVPTPGQIPAAVTGPGPGSLAPAGGMQAQV 282
Score = 67 (28.6 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 529 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 558
Score = 52 (23.4 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 37/118 (31%), Positives = 53/118 (44%)
Query: 379 PSSDAGF-QPGPSTSAGIGQTVSRDAERSARVPEDGTRA--HRNNAYTNMSMGLASKRST 435
P+ AG QP S G G TVS + +++ + P+ + H N A M AS +S
Sbjct: 198 PTLIAGNPQPVHSAGPGAGSTVSMN-QQNPQAPQAQSLGGMHVNGAPPLMQ---ASMQSG 253
Query: 436 VNDPLDSISHPSKIVKTEDGSGTSFSVGALN--VSKPIGSAPSQAFGAGLVPVNQVPK 491
V P I P+ + T G G+ G + V P GS P + G VP+ Q P+
Sbjct: 254 VPTP-GQI--PAAV--TGPGPGSLAPAGGMQAQVGMP-GSGPV-SIERGQVPM-QDPR 303
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 333 (122.3 bits), Expect = 4.7e-36, Sum P(3) = 4.7e-36
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 87 (35.7 bits), Expect = 4.7e-36, Sum P(3) = 4.7e-36
Identities = 38/167 (22%), Positives = 62/167 (37%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQTVHSAGPGSGSSVSMNQQNPQTPQAQT-LS 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSV 325
P + +Q A Q + PG + M V
Sbjct: 236 GMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSLAPAGGMQAQV 282
Score = 67 (28.6 bits), Expect = 4.7e-36, Sum P(3) = 4.7e-36
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 596 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 625
Score = 42 (19.8 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 433 RSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAGLVPVNQ 488
R T N P +P + GSG+S S+ N P S G P+ Q
Sbjct: 193 RQT-NIPTLIAGNPQTVHSAGPGSGSSVSMNQQNPQTPQAQTLSGMHVNGAPPLMQ 247
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 333 (122.3 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 78 (32.5 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 36/157 (22%), Positives = 60/157 (38%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQ-SLG 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGI 315
P + +Q A Q + PG +
Sbjct: 236 GMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSL 272
Score = 67 (28.6 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 529 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 558
Score = 46 (21.3 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 26/107 (24%), Positives = 38/107 (35%)
Query: 215 AQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKM----QLMPKV 270
+ + + PQ Q L + A PL Q Q PG P A L P
Sbjct: 217 SNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGG 276
Query: 271 -QEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIP 316
+AQ+ + + P + Q+P A+Q+ SLP P
Sbjct: 277 GMQAQVGM-----PGSGPVSMERGQVPMQDPRAAMQRGSLPANVPTP 318
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 333 (122.3 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 78 (32.5 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 36/157 (22%), Positives = 60/157 (38%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQ-SLG 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGI 315
P + +Q A Q + PG +
Sbjct: 236 GMHVNGAPPLMQASMQGGVPAPGQIPAAVTGPGPGSL 272
Score = 67 (28.6 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 529 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 558
Score = 45 (20.9 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 26/107 (24%), Positives = 38/107 (35%)
Query: 215 AQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKM----QLMPKV 270
+ + + PQ Q L + A PL Q Q PG P A L P
Sbjct: 217 SNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQIPAAVTGPGPGSLAPGG 276
Query: 271 -QEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIP 316
+AQ+ + + P + Q+P A+Q+ SLP P
Sbjct: 277 GMQAQVGM-----PGSGPVSMERGQVPMQDPRAAMQRGSLPANVPTP 318
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 322 (118.4 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 64/94 (68%), Positives = 73/94 (77%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 24 RSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 83
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G G P
Sbjct: 84 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP 117
Score = 81 (33.6 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 39/163 (23%), Positives = 60/163 (36%)
Query: 172 LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIMLGMATPQVLQMPI 231
+A + Q+ E+M +MKL + ++AR QAQ+++ + P++ +
Sbjct: 140 VASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKML 199
Query: 232 LRQGPGHPAQPLFQDGQQQVAQLPGLP----PLAQKMQLMP--KVQEAQIQLHNQFSAAT 285
R P P Q G P LP P++Q Q MP V A +
Sbjct: 200 HRPAVVPPINPSPQPGAVPAPNQP-LPQPNVPVSQP-QPMPGLHVNGAPQMMQPPQMGGG 257
Query: 286 QPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQ 328
P P Q P Q +P +PM P V P+
Sbjct: 258 VPGPMPG-QGPMGPAGGMQPQIGIPPGGPVPMDRGPVPIVDPR 299
Score = 66 (28.3 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 506 SPDVE-SALLQQVLSLTPEQLNSLPPE 531
S D E +AL+ QVL LTPEQ+ LP E
Sbjct: 443 SQDHEKAALIMQVLQLTPEQIAMLPAE 469
Score = 38 (18.4 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 97 RGGPGMAAIVDPQKQLGGPAI 117
RGGP M P + GP I
Sbjct: 370 RGGPMMGEPRGPMMEQRGPPI 390
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 333 (122.3 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 78 (32.5 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 36/157 (22%), Positives = 60/157 (38%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQ-SLG 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGI 315
P + +Q A Q + PG +
Sbjct: 236 GMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSL 272
Score = 70 (29.7 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 214 QAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEA 273
QA + G+ P QMP GPG P G Q +PG P++ M + Q
Sbjct: 247 QASMQGGVPAPG--QMPAAVTGPG-PGSLAPGGGMQAQVGMPGSGPVS-----MERGQ-G 297
Query: 274 QIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIP 316
+Q H+ A ++ ++Q+P A+Q+ SLP P
Sbjct: 298 TLQ-HSPVGPAGPASIE-RVQVPMQDPRAAMQRGSLPANVPTP 338
Score = 67 (28.6 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 549 QVTPQDHEKAALIMQVLQLTADQIAMLPPE 578
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 317 (116.6 bits), Expect = 9.1e-35, Sum P(3) = 9.1e-35
Identities = 63/94 (67%), Positives = 72/94 (76%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
Score = 94 (38.1 bits), Expect = 9.1e-35, Sum P(3) = 9.1e-35
Identities = 51/206 (24%), Positives = 83/206 (40%)
Query: 157 IQSQLASPNDP------LTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXX 210
I S P DP +T +A + Q+ E+M +MKL + ++AR
Sbjct: 111 IDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAY 170
Query: 211 XXFQAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKV 270
QAQ+++ + P++ + IL + H PL G+ Q PG P L ++
Sbjct: 171 ALLQAQVVMRIMDPEIA-LKILHRKI-H-VTPLIP-GKSQSVSGPG-PGLCPGPNVLLNQ 225
Query: 271 QEAQIQLHNQFSAATQPTLHPQIQLP-QNA-KNQALQQASLPGQSGIPMLPSMHPSVRPQ 328
Q + + P +Q P Q Q A++PG P+ P +++PQ
Sbjct: 226 QNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPPQGPMPAAVPGPG--PLTPG--GTMQPQ 281
Query: 329 IQLANSSSLNQQVHPPSLEN-QVQVS 353
+ + V P LE QVQ+S
Sbjct: 282 VGMPG-------VGPVPLERGQVQIS 300
Score = 68 (29.0 bits), Expect = 9.1e-35, Sum P(3) = 9.1e-35
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 584 QVTPQDQEKAALIMQVLQLTADQIAMLPPE 613
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 317 (116.6 bits), Expect = 1.2e-34, Sum P(4) = 1.2e-34
Identities = 63/94 (67%), Positives = 72/94 (76%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
Score = 84 (34.6 bits), Expect = 1.2e-34, Sum P(4) = 1.2e-34
Identities = 55/212 (25%), Positives = 82/212 (38%)
Query: 157 IQSQLASPNDP------LTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXX 210
I S P DP +T +A + Q+ E+M +MKL + ++AR
Sbjct: 111 IDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAY 170
Query: 211 XXFQAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKV 270
QAQ+++ + P++ + IL + H PL G+ Q + G P L P
Sbjct: 171 ALLQAQVVMRIMDPEIA-LKILHRKI-H-VTPLIP-GKSQSVSVSGPGP-GPGPGLCPG- 224
Query: 271 QEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPM---LPSMHPSVRP 327
+ L+ Q A QP H L + P Q GIP +P+ P P
Sbjct: 225 --PNVLLNQQNPPAPQPQ-H----LARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGP 277
Query: 328 QIQLANSSSLNQQ-----VHPPSLEN-QVQVS 353
L ++ Q V P LE QVQ+S
Sbjct: 278 G-SLTPGGAMQPQLGMPGVGPVPLERGQVQMS 308
Score = 70 (29.7 bits), Expect = 1.2e-34, Sum P(4) = 1.2e-34
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 480 GAGLVPVNQVPKVEEVQYSEKQIPQISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
G G+ ++ + +S Q Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 545 GGGIQGASKQGGSQPSSFSPGQ-SQVTPQDQEKAALIMQVLQLTADQIAMLPPE 597
Score = 37 (18.1 bits), Expect = 1.2e-34, Sum P(4) = 1.2e-34
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 366 PNSAMRSSFLPHPPSSDAGFQPGPSTSAGIGQTVS 400
P + M+ + + AG Q G AGI Q VS
Sbjct: 504 PGAGMQGTGIQGTGMQGAGIQGGGMQGAGI-QGVS 537
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 317 (116.6 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 63/94 (67%), Positives = 72/94 (76%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
Score = 85 (35.0 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 33/121 (27%), Positives = 51/121 (42%)
Query: 157 IQSQLASPNDP------LTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXX 210
+ S P DP +T +A + Q+ E+M +MKL + ++AR
Sbjct: 111 VDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARSMLLQNPQLAY 170
Query: 211 XXFQAQIMLGMATPQVLQMPILRQ-----------GPGHPAQPLFQDGQQQVAQLPGLPP 259
QAQ+++ + P L + IL + GPG A P Q QV +PG+ P
Sbjct: 171 ALLQAQVVMRIMDPD-LALRILHRKVHGRRCCXGPGPGPAALPAAGGMQPQVG-MPGVGP 228
Query: 260 L 260
L
Sbjct: 229 L 229
Score = 68 (29.0 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 504 QISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 510 QVTPQDQEKAALIMQVLQLTADQIAMLPPE 539
Score = 49 (22.3 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 260 LAQKMQLMPKVQEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGI-PM- 317
L Q QL + +AQ+ + LH ++ + A+LP G+ P
Sbjct: 162 LLQNPQLAYALLQAQVVMRIMDPDLALRILHRKVHGRRCCXGPGPGPAALPAAGGMQPQV 221
Query: 318 -LPSMHPSVRPQIQLAN 333
+P + P R Q+Q+A+
Sbjct: 222 GMPGVGPLERGQVQMAD 238
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 317 (116.6 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 63/94 (67%), Positives = 72/94 (76%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
Score = 87 (35.7 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 69/303 (22%), Positives = 107/303 (35%)
Query: 157 IQSQLASPNDP------LTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXX 210
I S P DP +T +A + Q+ E+M +MKL + ++AR
Sbjct: 111 IDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAY 170
Query: 211 XXFQAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKV 270
QAQ+++ + P++ + IL + H PL G+ Q PG P L P
Sbjct: 171 ALLQAQVVMRIMDPEIA-LKILHRKI-H-VTPLIP-GKSQPVSGPGPGP-GPGPGLCPG- 224
Query: 271 QEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPM---LPSMHPSVRP 327
+ L+ Q A QP H L + P Q GIP +P+ P P
Sbjct: 225 --PNVLLNQQNPPAPQPQ-H----LARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGPGP 277
Query: 328 QIQLANSSSLNQQVHPPSLENQVQVSASNLG-QNTWTKLPNSAMRSSFLPHPPSSDAGFQ 386
L ++ QV P + V + + + +P M LP P G
Sbjct: 278 G-SLTPGGAMQPQVGMPGV-GPVPLERGQMQISDPRAPMPRGPMAPGGLP--PRGLLGDA 333
Query: 387 PGPSTSAGIGQTVSRDAERSARV--PEDGTRAHRNNAYTNMSMGLASKRS-TVNDPLDSI 443
P G +V+ + E + P G H + + + R + DP I
Sbjct: 334 PN-DPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDSRGPSSHEMRGGPLADPRLLI 392
Query: 444 SHP 446
P
Sbjct: 393 GEP 395
Score = 70 (29.7 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 480 GAGLVPVNQVPKVEEVQYSEKQIPQISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
GAG+ + + +S Q Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 544 GAGIQGPGKQGGGQASSFSPGQ-SQVTPQDQEKAALIMQVLQLTADQIAMLPPE 596
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 317 (116.6 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 63/94 (67%), Positives = 72/94 (76%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
Score = 84 (34.6 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 54/207 (26%), Positives = 82/207 (39%)
Query: 157 IQSQLASPNDP------LTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXX 210
I S P DP +T +A + Q+ E+M +MKL + ++AR
Sbjct: 111 IDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAY 170
Query: 211 XXFQAQIMLGMATPQVLQMPILRQG-------PGHPAQPLFQDGQQQVAQL-PGLPPLAQ 262
QAQ+++ + P++ + IL + PG +QP+ G PG P
Sbjct: 171 ALLQAQVVMRIMDPEIA-LKILHRKIHVTPLIPGK-SQPVSGPGPGGPGPSGPGGPGPGP 228
Query: 263 KMQLMPKVQEAQIQLHNQFSAATQPTLHPQIQLPQN-AKN-QALQQASLPGQSGIPM--- 317
L P + L+ Q A QP H LP+ K+ L Q S+ G GIP
Sbjct: 229 APGLCPG---PNVMLNQQNPPAPQPQ-H----LPRRPVKDIPPLMQTSIQG--GIPAPGP 278
Query: 318 LPSMHPSVRPQIQLANSSSLNQQVHPP 344
+P+ P P L ++ QV P
Sbjct: 279 IPAAVPGPGPG-SLTPGGAMQPQVGMP 304
Score = 73 (30.8 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 480 GAGLVPVNQVPKVEEVQYSEKQIPQISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
GAG+ ++ + +S Q Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 561 GAGMQGASKQGGGQPSSFSPGQ-SQVTPQDQEKAALIMQVLQLTADQIAMLPPE 613
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 317 (116.6 bits), Expect = 4.6e-34, Sum P(3) = 4.6e-34
Identities = 63/94 (67%), Positives = 72/94 (76%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGP 100
NL G E +GR LRVD A ++K + + G P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
Score = 81 (33.6 bits), Expect = 4.6e-34, Sum P(3) = 4.6e-34
Identities = 54/205 (26%), Positives = 82/205 (40%)
Query: 157 IQSQLASPNDP------LTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXX 210
I S P DP +T +A + Q+ E+M +MKL + ++AR
Sbjct: 111 IDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAY 170
Query: 211 XXFQAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLP-----PLAQKM 264
QAQ+++ + P++ + IL + H PL Q V+ PG P P
Sbjct: 171 ALLQAQVVMRIMDPEIA-LKILHRKI-H-VTPLIPGKSQPVSGPGPGGPGGPGGPGGPGP 227
Query: 265 QLMPKVQEAQIQLHNQFSAATQPTLHPQIQLPQN-AKN-QALQQASLPGQSGIPM---LP 319
P + + NQ + A QP H LP+ K+ L Q S+ G GIP +P
Sbjct: 228 GPAPGLCPGPNVMLNQQNPAPQPQ-H----LPRRPVKDIPPLMQTSIQG--GIPAPGPIP 280
Query: 320 SMHPSVRPQIQLANSSSLNQQVHPP 344
+ P P L ++ QV P
Sbjct: 281 AAVPGPGPG-SLTPGGTMQPQVGMP 304
Score = 74 (31.1 bits), Expect = 4.6e-34, Sum P(3) = 4.6e-34
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 480 GAGLVPVNQVPKVEEVQYSEKQIPQISP-DVE-SALLQQVLSLTPEQLNSLPPE 531
GAG+ ++ + +S Q Q++P D E +AL+ QVL LT +Q+ LPPE
Sbjct: 558 GAGMQGASKQGAGQPSSFSPGQ-SQVTPQDQEKAALIMQVLQLTADQIAMLPPE 610
Score = 38 (18.4 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 376 PHPPSSDAGFQPGPSTSAGIGQTVSRDAERSARVPE 411
P P G PGP+ G V + + A P+
Sbjct: 216 PGGPGGPGGPGPGPAPGLCPGPNVMLNQQNPAPQPQ 251
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 333 (122.3 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 70/116 (60%), Positives = 81/116 (69%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESV 122
NL G E +GR LRVD A ++K + + G G P I P + P ES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESPYGETISPEDAPESI 128
Score = 83 (34.3 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 37/167 (22%), Positives = 61/167 (36%)
Query: 163 SPND-PLTLH--LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIML 219
SP D P ++ +A + Q+ E+M +MKL + ++AR QAQ+++
Sbjct: 120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVM 179
Query: 220 GMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQL-PGLPPLAQKMQLMPKVQEAQIQLH 278
+ P++ + IL + P L Q V PG Q P+ +AQ L
Sbjct: 180 RIVDPEIA-LKILHRQTNIPT--LIAGNPQPVHSAGPGAGSTVSMNQQNPQAPQAQ-SLG 235
Query: 279 NQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSV 325
P + +Q Q + PG + M V
Sbjct: 236 GMHVNGAPPLMQASMQSGVPTPGQIPAAVTGPGPGSLAPAGGMQAQV 282
Score = 52 (23.4 bits), Expect = 5.5e-30, Sum P(2) = 5.5e-30
Identities = 37/118 (31%), Positives = 53/118 (44%)
Query: 379 PSSDAGF-QPGPSTSAGIGQTVSRDAERSARVPEDGTRA--HRNNAYTNMSMGLASKRST 435
P+ AG QP S G G TVS + +++ + P+ + H N A M AS +S
Sbjct: 198 PTLIAGNPQPVHSAGPGAGSTVSMN-QQNPQAPQAQSLGGMHVNGAPPLMQ---ASMQSG 253
Query: 436 VNDPLDSISHPSKIVKTEDGSGTSFSVGALN--VSKPIGSAPSQAFGAGLVPVNQVPK 491
V P I P+ + T G G+ G + V P GS P + G VP+ Q P+
Sbjct: 254 VPTP-GQI--PAAV--TGPGPGSLAPAGGMQAQVGMP-GSGPV-SIERGQVPM-QDPR 303
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 260 (96.6 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 56/112 (50%), Positives = 74/112 (66%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY +EEQ+ +I G V++FRLV DRETGKPKG+GF EY D ++A SA R
Sbjct: 8 RVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVR 67
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGR-GGPGMAAIVDPQKQLGGPAI 117
NL EI GR+LRVDF+ N+K + + + G GG + Q+Q P++
Sbjct: 68 NLNDTEIMGRKLRVDFS-NEKPSTNDPDDGPPGGANGSGAPSYQQQQEVPSL 118
Score = 83 (34.3 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 43/181 (23%), Positives = 70/181 (38%)
Query: 163 SPNDPLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIMLGMA 222
S D ++ L + QL +I+ +MK M+ + +A + FQA +++ +
Sbjct: 132 SATDAISRTLRTLPPAQLLDILQQMKTMSGADPARATELLTQAPQLSYAIFQALLLMDLV 191
Query: 223 TPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLP-GLPPLAQKM-QLMPKVQEAQIQL-HN 279
+P + + PG P A P G PP A + Q P + + +
Sbjct: 192 SPDAIHSVV---DPGAAVPP--PAAAPAHAPAPYGAPPAAAAVYQQHPVANTPPVPMPYA 246
Query: 280 QFSAATQPTLHPQ-IQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANSSSLN 338
+A T T P PQ+ Q +LP Q+ I LP R QI +S +
Sbjct: 247 PPAAPTAATPTPAPAAAPQDTDALMQQVLALP-QATIDQLPEAE---RAQIMALRASLMG 302
Query: 339 Q 339
Q
Sbjct: 303 Q 303
Score = 59 (25.8 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 484 VPVNQVPKVEEVQYSEKQIPQISPDVESALLQQVLSLTPEQLNSLP 529
VP+ P + P +P AL+QQVL+L ++ LP
Sbjct: 241 VPMPYAPPAAPTAATPTPAPAAAPQDTDALMQQVLALPQATIDQLP 286
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 299 (110.3 bits), Expect = 4.9e-26, P = 4.9e-26
Identities = 58/79 (73%), Positives = 66/79 (83%)
Query: 12 GNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY 71
GNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 72 EINGRQLRVDFAENDKGAD 90
E +GR LRVD A ++K +
Sbjct: 62 EFSGRALRVDNAASEKNKE 80
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 235 (87.8 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 51/113 (45%), Positives = 69/113 (61%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ VF+GNIPY+ TEEQ+ +I G V FRL+++ ETGKPKGYGF ++ D + A SA R
Sbjct: 8 KSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVR 67
Query: 67 NLQGYEINGRQLRVDFAENDK--GADRNREQGRGGPGMAAIVDPQKQLGGPAI 117
NL YEI GR++RVD+ N++ + Q PG QLGGP +
Sbjct: 68 NLNDYEIMGRKIRVDWPHNNEKDSVPEDYSQPSQMPGQDG------QLGGPPL 114
Score = 85 (35.0 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 45/167 (26%), Positives = 69/167 (41%)
Query: 161 LASPNDPLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIMLG 220
L PN ++ LA + NQL +++ +MK +A + +A + FQA ++L
Sbjct: 131 LDCPN-AISQTLAALPPNQLLDVLQQMKALAMSDPARATELLRQAPQLAYAIFQALLLLN 189
Query: 221 MATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQ 280
+ L ++ Q AQP+ P PP A Q V Q+
Sbjct: 190 LVDYSTLGA-VVEQA----AQPMAP---------PPAPPAAAAFQPFGAVP-GQVSTPPM 234
Query: 281 FSAA-TQPTLHP-QIQLPQNAKNQALQQA-SLPGQSGIPMLPSMHPS 324
+ QP P Q Q+P + + LQQ ++P QS I LP M S
Sbjct: 235 VNTPFAQPPPQPTQQQVP--GQEELLQQVLNMP-QSAIDALPPMERS 278
Score = 64 (27.6 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 469 KPIGSAPSQAFGAGLV--PVNQVPKVEEVQYSEKQIPQISPDVESALLQQVLSLTPEQLN 526
+P G+ P Q +V P Q P Q +++Q+P + LLQQVL++ ++
Sbjct: 220 QPFGAVPGQVSTPPMVNTPFAQPPP----QPTQQQVPG-----QEELLQQVLNMPQSAID 270
Query: 527 SLPP 530
+LPP
Sbjct: 271 ALPP 274
Score = 37 (18.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 488 QVPKVEEVQYSEKQIPQISPDVESALLQQVLSLTPEQL 525
QVP EE+ +PQ + D + + + L +QL
Sbjct: 250 QVPGQEELLQQVLNMPQSAIDALPPMERSQIMLLRQQL 287
>POMBASE|SPBC3B9.11c [details] [associations]
symbol:ctf1 "mRNA cleavage and polyadenylation
specificity factor complex subunit Ctf1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC3B9.11c
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0006378 GenomeReviews:CU329671_GR GO:GO:0003723
eggNOG:COG0724 GO:GO:0005847 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 PIR:T40350 RefSeq:NP_596669.1
ProteinModelPortal:O43040 STRING:O43040 EnsemblFungi:SPBC3B9.11c.1
GeneID:2541018 KEGG:spo:SPBC3B9.11c OMA:QLAYAIF OrthoDB:EOG4GQTF6
NextBio:20802132 Uniprot:O43040
Length = 363
Score = 240 (89.5 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 46/94 (48%), Positives = 63/94 (67%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M+ + VFVGNIPYD +E+Q+ EI +VGPV +F+LV+D ETG KGYGFCE+ D ET
Sbjct: 1 MSMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET 60
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNRE 94
A R L E+ R++RV+F ND +++ E
Sbjct: 61 TAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYE 94
Score = 79 (32.9 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 14/19 (73%), Positives = 19/19 (100%)
Query: 512 ALLQQVLSLTPEQLNSLPP 530
AL+QQ+L+LTPEQ+N+LPP
Sbjct: 329 ALIQQLLALTPEQINALPP 347
Score = 59 (25.8 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 17/85 (20%), Positives = 38/85 (44%)
Query: 149 GVQSNQNGIQSQLASPNDPLTLH-LAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXX 207
G ++ I + + P P + L+ S +L ++S+++ + E+AR+
Sbjct: 198 GDYTSGTSISNPTSIPLAPSVVQVLSTFSAQELLNMLSKLQTVVHIAPEEARRLLIANPA 257
Query: 208 XXXXXFQAQIMLGMATPQVLQMPIL 232
FQA +++ + VLQ ++
Sbjct: 258 LPYAAFQAMLLMNLVDANVLQQVVV 282
Score = 43 (20.2 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
Identities = 24/120 (20%), Positives = 48/120 (40%)
Query: 330 QLANSSSLNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSSFLPHPPSSDAGFQPGP 389
Q A+ SS N + PP L + + AS G +P+ A+ SS + + + P
Sbjct: 106 QNAHESSYNSRFIPPVLHSTSSLPASQGGG-----MPSPAIYSSSMATNLNKNINSTSVP 160
Query: 390 STSAGIGQTVSRDAERSARVPEDGTRAHRNNAYTNMSMGLASKRSTVNDPLDSISHPSKI 449
+ + T D+ R + N ++ + G + +++++P PS +
Sbjct: 161 AYNFHNSMTSDFDSASQPHTDAYNARTFQYNK-SSQNKGDYTSGTSISNPTSIPLAPSVV 219
Score = 41 (19.5 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 28/104 (26%), Positives = 45/104 (43%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLA-QKMQLMPKVQEAQ 274
Q++ + ++L M Q H A P ++ ++ + P LP A Q M LM V
Sbjct: 220 QVLSTFSAQELLNMLSKLQTVVHIA-P--EEARRLLIANPALPYAAFQAMLLMNLVDANV 276
Query: 275 IQ----------LHNQFSAATQPTLHPQIQLPQNAKNQALQQAS 308
+Q +H SA + P PQ ++P + N QQA+
Sbjct: 277 LQQVVVAVKNKNMHQPASATSSPPSVPQ-KIPSS--NHKSQQAN 317
>POMBASE|SPAC644.16 [details] [associations]
symbol:SPAC644.16 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
Length = 422
Score = 281 (104.0 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 94/357 (26%), Positives = 155/357 (43%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VGNIPY+ EEQ+I+I ++ GPV SF+LVID E+G+PKGYGFCEY D TA SA RNL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRG-GPGMAAIVDPQKQLGGPAIHGESVHHQPI 127
Y+ R+LRVDF AD+ R + GP PQ +G + P
Sbjct: 67 NNYDAGTRRLRVDFPT----ADQIRRLDKLLGPSRYGYY-PQSYANQSYTYGNNFGSYP- 120
Query: 128 GLHIAIXXXXXXXXXXXXXQVGVQSNQNGIQSQLASPNDPLTLHLAKMSRNQLNEIMSEM 187
+ G + LA ND + LA+++ N+++ ++S +
Sbjct: 121 PTQPSTQPLPQSYGYPSYPPAGYRGGSARPSGVLA--NDEVYRVLAQLAPNEIDYMLSAI 178
Query: 188 KLMATQNKEQARQXXXXXXXXXXXXFQAQIMLGMATPQVLQMPILRQG---PG--HPAQP 242
K + + EQA Q FQA +M + V+ ++ G PG P +
Sbjct: 179 KALCLEAPEQAAQLFETNPQLSYAVFQAMLMKRYTSESVVADLLIPAGVNLPGAQEPNRG 238
Query: 243 LFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQ 302
F + +PG P++ + ++ + + P +++
Sbjct: 239 YFSPMHTYSSAVPG--PISVPSAPYGRASSTIAEVSPMYGSHAAPYASTPSAAVGSSRGS 296
Query: 303 ALQQASLP--GQSGIPMLPSMHPSVRPQIQLANSSSLNQQVHPPSLENQVQVSASNL 357
A++P G P + +P+ P +AN + + + S+ + + + +L
Sbjct: 297 TPASATVPISPARGFPTTSAYNPAP-PAYGMANPAYGSTGIRSSSIPSSGSIRSPSL 352
Score = 61 (26.5 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 510 ESALLQQVLSLTPEQLNSLPPE 531
++AL+ Q+++LT +Q+N LPP+
Sbjct: 380 KAALIAQLMALTDDQINVLPPD 401
>SGD|S000003012 [details] [associations]
symbol:RNA15 "Component of the cleavage and polyadenylation
factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0006379 "mRNA
cleavage" evidence=IDA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000003012
EMBL:BK006941 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:NOG246793 GO:GO:0006378 GO:GO:0006379 GO:GO:0005849
KO:K14407 InterPro:IPR026896 Pfam:PF14304
GeneTree:ENSGT00550000074641 OrthoDB:EOG4GQTF6 PDB:2KM8 PDBsum:2KM8
PDB:2L9B PDBsum:2L9B EMBL:M73462 EMBL:Z72566 PIR:B40257
RefSeq:NP_011471.1 PDB:2X1A PDB:2X1B PDB:2X1F PDBsum:2X1A
PDBsum:2X1B PDBsum:2X1F ProteinModelPortal:P25299 SMR:P25299
DIP:DIP-1489N IntAct:P25299 MINT:MINT-389896 STRING:P25299
PaxDb:P25299 PeptideAtlas:P25299 EnsemblFungi:YGL044C GeneID:852838
KEGG:sce:YGL044C CYGD:YGL044c HOGENOM:HOG000247912 OMA:NINMTTP
EvolutionaryTrace:P25299 NextBio:972414 Genevestigator:P25299
GermOnline:YGL044C Uniprot:P25299
Length = 296
Score = 225 (84.3 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 38/91 (41%), Positives = 64/91 (70%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R V++G+IPYD TEEQ++++C VGPV++ +++ D +TG+ KGY F E++D E++ SA R
Sbjct: 18 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 77
Query: 67 NLQGYEINGRQLRVDFAEND--KGADRNREQ 95
NL GY++ R L+ ++ N G + ++Q
Sbjct: 78 NLNGYQLGSRFLKCGYSSNSDISGVSQQQQQ 108
Score = 66 (28.3 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 25/100 (25%), Positives = 48/100 (48%)
Query: 258 PPLAQKMQLMPKVQEAQIQLHNQFSAATQPTLHPQ--IQLPQNAKNQALQQASLPGQSGI 315
P + +L K +E Q++ +F T+ HP+ + L + + A L +GI
Sbjct: 161 PAMMISSELAKKPKEVQLKFLQKFQEWTRA--HPEDAVSLLELCPQLSFVTAELLLTNGI 218
Query: 316 PMLPSMHP-SVRPQIQLA--NSSSLNQQVHPPSLENQVQV 352
+ + P + RPQ + + N++S+N+ V P L Q ++
Sbjct: 219 CKVDDLIPLASRPQEEASATNNNSVNEVVDPAVLNKQKEL 258
Score = 53 (23.7 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 483 LVPVNQVPKVEEVQYSEKQIPQI-SPDV---ESALLQQVLSLTPEQLNSLPPE 531
L+P+ P+ E + + ++ P V + LL+QVL L Q++ LP +
Sbjct: 224 LIPLASRPQEEASATNNNSVNEVVDPAVLNKQKELLKQVLQLNDSQISILPDD 276
>DICTYBASE|DDB_G0280529 [details] [associations]
symbol:cstf2 "cleavage stimulation factor 64 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0280529 GO:GO:0005634 GO:GO:0000166
GenomeReviews:CM000152_GR Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 EMBL:AAFI02000036 eggNOG:COG0724 GO:GO:0006379
KO:K14407 InterPro:IPR025742 Pfam:PF14327 RefSeq:XP_641214.1
ProteinModelPortal:Q54V94 EnsemblProtists:DDB0233706 GeneID:8622595
KEGG:ddi:DDB_G0280529 InParanoid:Q54V94 Uniprot:Q54V94
Length = 541
Score = 240 (89.5 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 53/110 (48%), Positives = 71/110 (64%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ VFVGNIPY+A E+ LIEI VG VVSFRL+ D+++ K KGYGFCEY++ + ALSA R
Sbjct: 3 KSVFVGNIPYEANEKDLIEIFSGVGKVVSFRLLEDKDSKKSKGYGFCEYENVDNALSAIR 62
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNR--EQGRGGPGMAAIV-DPQKQLG 113
N + R LRV +A+N+K ++ +Q G G I DP+ Q G
Sbjct: 63 NYMLFTFGNRVLRVSYADNEKASEMQMLMQQQMGNTGGQMIPNDPRIQHG 112
Score = 81 (33.6 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 42/149 (28%), Positives = 54/149 (36%)
Query: 147 QVGVQSNQNGIQSQLASPNDPLTLHLAKMSRN--QLNEIMSEMKLMATQNKEQARQXXXX 204
Q Q NQ Q QL+ + S N QL E++S MK +QA
Sbjct: 159 QQNQQQNQQQQQQQLSPQQTKNAIQNIIESTNPAQLFEMLSNMKSFVQHQPDQAISILIN 218
Query: 205 XXXXXXXXFQAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKM 264
AQ++LGM + Q IL P + QP Q QQQ P P Q
Sbjct: 219 YPQMGLALLHAQVVLGMIS-QNAATQILLSNPKNQ-QP--QQQQQQQQPQPQQQPQPQNF 274
Query: 265 QLMPKVQEAQIQLHNQFSAATQPTLH-PQ 292
P + Q +NQ Q + PQ
Sbjct: 275 NQSPTMYNNQN--NNQMMGMQQGNMGGPQ 301
Score = 58 (25.5 bits), Expect = 7.0e-19, Sum P(3) = 7.0e-19
Identities = 32/115 (27%), Positives = 47/115 (40%)
Query: 268 PKVQE-AQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVR 326
P++Q AQ Q NQ Q + Q Q N QQ Q I + + +
Sbjct: 107 PRIQHGAQNQQQNQQQQQNQQQQNQQ----QWRGNDIQQQQQQQQQQHI----NQQQNQQ 158
Query: 327 PQIQLANSSSLNQQVHPPSLENQVQ--VSASNLGQNTWTKLPNSAMRSSFLPHPP 379
Q Q N QQ+ P +N +Q + ++N Q + L N M+S F+ H P
Sbjct: 159 QQNQQQNQQQQQQQLSPQQTKNAIQNIIESTNPAQ-LFEMLSN--MKS-FVQHQP 209
Score = 41 (19.5 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 487 NQVPKVEEVQYSEKQIPQISPDVESALLQQVLSLT-PEQL 525
NQ + ++ Q ++Q Q+SP +Q ++ T P QL
Sbjct: 156 NQQQQNQQ-QNQQQQQQQLSPQQTKNAIQNIIESTNPAQL 194
Score = 38 (18.4 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 517 VLSLTPEQLNSLP 529
VLSLT +Q++ +P
Sbjct: 512 VLSLTQQQIDQVP 524
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 222 (83.2 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 45/77 (58%), Positives = 56/77 (72%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNI YD +E+ + I + G V+S ++V DRETGKPKGYGF E+ D +TA A R
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 67 NLQGYEINGRQLRVDFA 83
NL GYE++GR LRVD A
Sbjct: 78 NLNGYELSGRILRVDSA 94
Score = 83 (34.3 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 43/218 (19%), Positives = 81/218 (37%)
Query: 150 VQSNQNGIQSQLASPNDPLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXX 209
V+ N G + + ++ +A ++ ++ E+M +++ N + +
Sbjct: 113 VEENPYGPECDAGKAPERISQTVASLAPEKMFELMKQLQESLKNNPSELHKFLVEHPQIA 172
Query: 210 XXXFQAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPK 269
QA +++ + PQ + +L + P F + Q G PP+ Q+ Q MP
Sbjct: 173 YAVLQAAVVMRIVDPQTA-LGLLHRNKAATLTP-FHNTPQ------GAPPMVQQQQ-MPM 223
Query: 270 VQEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQI 329
+ H S P + P + P QA Q GQ P P +P +
Sbjct: 224 PPKPTFA-HPGPSMG--PPMGPPMGPPMGHP-QAPQYGQNYGQPVAPQQYKPPPQQQPPV 279
Query: 330 QLANSSSLNQQVHPPSLEN-QVQVSASNLGQNTWTKLP 366
Q+ QQ H +N ++ + L ++ LP
Sbjct: 280 QMRPPVQQPQQNHQEEQQNAELLMQVMQLSEHDLQMLP 317
Score = 49 (22.3 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 485 PVNQVPKVEEVQYSEKQIPQISPDVESALLQQVLSLTPEQLNSLP 529
PV P V++ Q + ++ Q + LL QV+ L+ L LP
Sbjct: 278 PVQMRPPVQQPQQNHQEEQQ-----NAELLMQVMQLSEHDLQMLP 317
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 185 (70.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
+SQ V+VGN+PY TEE++ VG V + R+V DRETG+P+G+ F E+ +E A
Sbjct: 2 ASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQ 61
Query: 63 SARRNLQGYEINGRQLRVDFA 83
A L G NGR LRV++A
Sbjct: 62 RAVEQLNGVAFNGRNLRVNYA 82
>CGD|CAL0002731 [details] [associations]
symbol:orf19.4538 species:5476 "Candida albicans" [GO:0005849
"mRNA cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0002731 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:NOG246793 GO:GO:0003676 KO:K14407 InterPro:IPR025742
Pfam:PF14327 HOGENOM:HOG000247912 EMBL:AACQ01000143
EMBL:AACQ01000140 RefSeq:XP_712869.1 RefSeq:XP_712963.1
ProteinModelPortal:Q59T93 STRING:Q59T93 GeneID:3645431
GeneID:3645525 KEGG:cal:CaO19.12013 KEGG:cal:CaO19.4538
Uniprot:Q59T93
Length = 276
Score = 185 (70.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 39/80 (48%), Positives = 49/80 (61%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
S+ CV +G P+D TEEQ+ +I R VGPV+ +L+ D TGK KGY Y D ETA S
Sbjct: 39 SKSTCVSIGKFPFDYTEEQVRDIARSVGPVLDVKLLFDELTGKSKGYAIINYGDNETASS 98
Query: 64 ARRNLQGYEI-NGRQLRVDF 82
A RNL + NGR L+ F
Sbjct: 99 AVRNLNYMTLPNGRFLKCSF 118
Score = 47 (21.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 148 VGVQSNQNGIQSQLASPNDPLTLHLAKMSRNQLNEIMSEMKLMATQNKEQAR 199
+G+Q + N SQ+ S T+ L+ + N +I+ E+K+M+ N + +
Sbjct: 137 LGIQIHPNQNASQVIS-----TI-LSNIDSNSALQILKEIKVMSIDNPKSTK 182
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 184 (69.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 36/101 (35%), Positives = 60/101 (59%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M SQ++ ++VG++ YD T ++L + G + +L++DRETG+ KG+ F Y ++
Sbjct: 13 MTMSQNK-IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDA 71
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
A A G ++ GR++RV+ A + G DR R+ G GG G
Sbjct: 72 AQEAVSKANGIDLQGRKIRVNIARENTG-DRRRDGGSGGRG 111
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 184 (69.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 36/101 (35%), Positives = 60/101 (59%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M SQ++ ++VG++ YD T ++L + G + +L++DRETG+ KG+ F Y ++
Sbjct: 13 MTMSQNK-IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDA 71
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
A A G ++ GR++RV+ A + G DR R+ G GG G
Sbjct: 72 AQEAVSKANGIDLQGRKIRVNIARENTG-DRRRDGGSGGRG 111
>TAIR|locus:2027829 [details] [associations]
symbol:ESP1 "AT1G73840" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006396 "RNA processing" evidence=IMP]
[GO:0035194 "posttranscriptional gene silencing by RNA"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006470 "protein dephosphorylation" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006396 GO:GO:0035194
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:AY070424 EMBL:AY096602 IPI:IPI00548325 RefSeq:NP_177525.2
UniGene:At.27548 ProteinModelPortal:Q8VYM7 PaxDb:Q8VYM7
PRIDE:Q8VYM7 EnsemblPlants:AT1G73840.1 GeneID:843720
KEGG:ath:AT1G73840 TAIR:At1g73840 eggNOG:NOG274949
HOGENOM:HOG000084101 InParanoid:Q8VYM7 OMA:VHEPANT PhylomeDB:Q8VYM7
ProtClustDB:CLSN2690493 ArrayExpress:Q8VYM7 Genevestigator:Q8VYM7
Uniprot:Q8VYM7
Length = 388
Score = 146 (56.5 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 67/236 (28%), Positives = 93/236 (39%)
Query: 168 LTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXXXXXFQAQIMLGMATPQVL 227
L +LA M+++QL +IMS+MK + QN +QAR+ FQAQIMLGM P +
Sbjct: 12 LPANLAGMTKSQLYDIMSQMKTLIDQNHQQAREILIRNPLLTKALFQAQIMLGMVQPPQV 71
Query: 228 QMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQP 287
+ Q P Q Q + P + Q V E + Q P
Sbjct: 72 TPKVEPQAVQQP-----QQSHQSIPPKPNVQAHMSSFQGGGSVHEPANTMQPQAPIRKHP 126
Query: 288 TLHPQIQLPQN---AKNQALQQA--SLPGQSGI--PMLPSM-HPSVRPQIQLANSSSLNQ 339
T P P + N A Q S P + G P + SM HP Q+Q A + +
Sbjct: 127 TPQPMPMPPPPPSVSANSAQSQPRFSHPQRQGHLNPAVTSMSHPQ-SSQVQNAPPPASHH 185
Query: 340 QV--HPPSLENQVQVSASNLGQNTWTKL--PNSAMRSSFLPHPPSSDAGFQPGPST 391
PP + S++ L Q P+ A + S H A Q GP+T
Sbjct: 186 PTSQQPPFHHLDIPASSTQLQQQPMHSGGGPHVAQQQSRPYHHQYGQA--QTGPNT 239
Score = 102 (41.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 505 ISPDVESALLQQVLSLTPEQLNSLPPE 531
IS ++E ALLQQV+SLTPEQ+N LPPE
Sbjct: 348 ISAEMEKALLQQVMSLTPEQINLLPPE 374
Score = 74 (31.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/148 (27%), Positives = 61/148 (41%)
Query: 302 QALQQASLPGQSGIPMLPSMHPSVRPQ-IQLANSSSLNQQVHPPSLENQVQVSASNLGQN 360
+AL QA + G+ P + P V PQ +Q S +Q + PP Q +S+ G +
Sbjct: 54 KALFQAQI--MLGMVQPPQVTPKVEPQAVQQPQQS--HQSI-PPKPNVQAHMSSFQGGGS 108
Query: 361 TWTKLPNSAMRSSFLPHP-PSSDAGFQPGPSTSAGIGQTVSRDAERSARVPEDGTRAHRN 419
++ HP P P PS SA Q+ R + P+ + H N
Sbjct: 109 VHEPANTMQPQAPIRKHPTPQPMPMPPPPPSVSANSAQSQPRFSH-----PQ--RQGHLN 161
Query: 420 NAYTNMSMGLASKRSTVNDPLDSISHPS 447
A T+MS +S+ N P + HP+
Sbjct: 162 PAVTSMSHPQSSQ--VQNAPPPASHHPT 187
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 176 (67.0 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VGN P+ TEE+L +G + + R+V DRETG+P+G+ F E+ +E +A A +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 69 QGYEINGRQLRVDFA 83
G E NGR LRV+ A
Sbjct: 67 NGAEFNGRPLRVNLA 81
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 172 (65.6 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VGN P+ TE+ L + G V + R+V DRETG+P+G+ F E+ +E A A
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 69 QGYEINGRQLRVDFAEN 85
G + NGR LRV+ A+N
Sbjct: 66 NGVDFNGRALRVNLAQN 82
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 172 (65.6 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VGN P+ TE+ L + G V + R+V DRETG+P+G+ F E+ +E A A
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 69 QGYEINGRQLRVDFAEN 85
G + NGR LRV+ A+N
Sbjct: 66 NGVDFNGRALRVNLAQN 82
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 165 (63.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 37/93 (39%), Positives = 51/93 (54%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R V+VGN+ Y +T EQL E VG + ++ DR +G PKGY + E++ E+ A
Sbjct: 28 RSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAID 87
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGG 99
L G E GR+LRV + R R +GRGG
Sbjct: 88 ELHGKEFRGRELRVTAKRTNLPGFR-RGRGRGG 119
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 187 (70.9 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 42/104 (40%), Positives = 59/104 (56%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FVGN+P+ A E+ + E+ G V+ RL D E+G+PKG+G+ +Y + A
Sbjct: 380 SPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEAR 439
Query: 63 SARRNLQGYEINGRQLRVDF----AENDKGAD-RNREQGRGGPG 101
A LQG EI+GR +R+DF A N G R GRGG G
Sbjct: 440 KAYNELQGAEIDGRPIRLDFSTPRANNGGGGGGRGGFGGRGGRG 483
Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/88 (32%), Positives = 56/88 (63%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVGN+ ++ TEE L + + G + S R++ +R+TG+ +G+G+ E+ + A A +
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQG 96
+ +EI+GR++ +D+A G N++QG
Sbjct: 338 KEHEIDGRKINLDYAT---GRPANKDQG 362
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 164 (62.8 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ ++VGN+P+ EQL EI E G V+ R+++++ TG+ +GYGF E +DE+ A
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDED-AEKFMT 61
Query: 67 NLQGYEINGRQLRVDFAENDKG 88
L G E+ GRQL V A G
Sbjct: 62 GLNGKEVEGRQLVVSEARERNG 83
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 164 (62.8 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ ++VGN+P+ EQL EI E G V+ R+++++ TG+ +GYGF E +DE+ A
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDED-AEKFMT 61
Query: 67 NLQGYEINGRQLRVDFAENDKG 88
L G E+ GRQL V A G
Sbjct: 62 GLNGKEVEGRQLVVSEARERNG 83
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 161 (61.7 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
VF+G +PY TE +I + + G VV+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 VFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 69 QGYEINGRQLRVDFAEN 85
G +I GR +RVD N
Sbjct: 98 NGIKIKGRTIRVDHVAN 114
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 160 (61.4 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG + + + L + G V ++ DRETG+ +G+GF + E++A +A + +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
G E+NGRQ+RV+ A A R+ G GG G
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRSSFGGGGGYG 129
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 141 (54.7 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A+ R +FVGN+ TEE L E+ + GPV+ ++ D++ GKPK + F +K E +
Sbjct: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRN 92
A L G ++ GR +++ F A ++
Sbjct: 64 PYAMNLLNGIKLYGRPIKIQFRSGSSHAPQD 94
Score = 40 (19.1 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 406 SARVPEDGTRAHRNNAYTNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGTSF 460
S+ P+D + ++ + N S S S +D+++ ++I++ S +F
Sbjct: 88 SSHAPQDVSLSYPQHHVGNSSPTSTSPSSRYERTMDNMTSSAQIIQRSFSSPENF 142
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 141 (54.7 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A+ R +FVGN+ TEE L E+ + GPV+ ++ D++ GKPK + F +K E +
Sbjct: 2 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 60
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRN 92
A L G ++ GR +++ F A ++
Sbjct: 61 PYAMNLLNGIKLYGRPIKIQFRSGSSHAPQD 91
Score = 40 (19.1 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 406 SARVPEDGTRAHRNNAYTNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGTSF 460
S+ P+D + ++ + N S S S +D+++ ++I++ S +F
Sbjct: 85 SSHAPQDVSLSYPQHHVGNSSPTSTSPSSRYERTMDNMTSSAQIIQRSFSSPENF 139
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 157 (60.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 33/101 (32%), Positives = 59/101 (58%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M+ ++RC FVG + + +E L + G V+ +++ DRE+G+ +G+GF +KDE+
Sbjct: 1 MSEVEYRC-FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKA 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
A + G E++GR + V+ A++ +G+ GRGG G
Sbjct: 60 MRDAIEEMNGKELDGRVITVNEAQS-RGSGGGGG-GRGGSG 98
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 157 (60.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 34/104 (32%), Positives = 61/104 (58%)
Query: 1 MASS--QHRCVFVGNIPYDATEEQLIEIC-REVGPVVSFRLVIDRETGKPKGYGFCEYKD 57
MAS ++RC FVG + + AT+++ +E + G V+ +++ DRETG+ +G+GF +KD
Sbjct: 1 MASGDVEYRC-FVGGLAW-ATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
Query: 58 EETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
E+ A + G +++GR + V+ A++ +G GG G
Sbjct: 59 EKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGG 102
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 155 (59.6 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 35/99 (35%), Positives = 52/99 (52%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +FVG + ++ E+ L + R GP+ +V DRET + +G+GF + D E A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
A R + G ++GRQ+RVD A R G G G
Sbjct: 62 DAMRAMNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRG 100
>POMBASE|SPBC13A2.01c [details] [associations]
symbol:SPBC13A2.01c "nuclear cap-binding complex small
subunit (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000243 "commitment complex" evidence=ISO] [GO:0000339 "RNA cap
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005819 "spindle" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005846 "nuclear cap binding complex"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC13A2.01c
GO:GO:0005829 GO:GO:0048471 GO:GO:0005819 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0051028 GO:GO:0000243 eggNOG:COG0724 GO:GO:0045292
GO:GO:0000339 HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846
HSSP:P52298 KO:K12883 RefSeq:NP_596414.1 ProteinModelPortal:Q9P383
SMR:Q9P383 STRING:Q9P383 EnsemblFungi:SPBC13A2.01c.1 GeneID:2539791
KEGG:spo:SPBC13A2.01c OMA:EIRRIIM OrthoDB:EOG4W11PG
NextBio:20800940 Uniprot:Q9P383
Length = 182
Score = 155 (59.6 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 37/125 (29%), Positives = 62/125 (49%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A Q CV+VGN+ + TEEQ+ + + G + + +DR T P G+ F EY + + A
Sbjct: 27 AVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDA 86
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGES 121
L + + + ++ R +R D D G + R+ GRG G + D ++ P G +
Sbjct: 87 LDSLKYISRTSLDERIIRADL---DHGYEEGRQYGRGASG-GQVRDEMREEFDPGRGGYA 142
Query: 122 VHHQP 126
+ QP
Sbjct: 143 KNRQP 147
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 155 (59.6 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/91 (35%), Positives = 53/91 (58%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G + + + L + G VV ++++DRETG+ +G+GF + DE A +A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGG 99
G E+NGR +RV+ A ND+ + R G GG
Sbjct: 97 DGKELNGRHIRVNPA-NDRPS-APRAYGGGG 125
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 154 (59.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 153 (58.9 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 153 (58.9 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 153 (58.9 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 165 (63.1 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 33/84 (39%), Positives = 51/84 (60%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
++H+ +FVGN+ + T E L RE G VV R+V D +TG+ +GYGF Y + +
Sbjct: 175 TEHK-LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 64 ARRNLQGYEINGRQLRVDFAENDK 87
A +L G+E+ GR +RV+ A+ K
Sbjct: 234 ALESLDGFELEGRAIRVNLAQGKK 257
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 148 (57.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/113 (29%), Positives = 57/113 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G + +D EE L ++ + G + +V DRET + +G+GF +++ + A A +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGES 121
G ++GRQ+RVD A G R +G G + + GG +G S
Sbjct: 67 NGKAVDGRQIRVDQAGKSSGDRRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSS 119
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 39/103 (37%), Positives = 56/103 (54%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FVGN+P+DA E+ + EV V S RL ++E+G+ KG+G+ + E A
Sbjct: 338 SPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAK 397
Query: 63 SARRNLQGYEINGRQLRVDFAE----NDKGADRNREQGRGGPG 101
SA L G INGR R+D++ + G R GRGG G
Sbjct: 398 SAFEQLNGQSINGRNCRLDYSTPRPPREDGGFGGRGGGRGGFG 440
Score = 152 (58.6 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FVGN+ ++ + L E + G V S R++ DRE+G+ KG+G+ ++ E A
Sbjct: 235 SDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAE 294
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQ 109
A QG I+GR+++VDF+ K + N G V P+
Sbjct: 295 KAHGEKQGAFIDGREIKVDFSTG-KATNSNDAAGARAKKYGDTVSPE 340
Score = 39 (18.8 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 376 PHPPSSDAGFQPGPSTSAGIG 396
P PP D GF G G
Sbjct: 420 PRPPREDGGFGGRGGGRGGFG 440
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 147 (56.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 36/103 (34%), Positives = 55/103 (53%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +FVG + ++ E L + GP+ +V DRET + +G+GF + + E A
Sbjct: 2 SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFAENDK-----GADRNREQGRGGP 100
+A R + G ++GRQ+RVD A GA E+GRG P
Sbjct: 62 NAMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGGYERGRGYP 104
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 147 (56.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 34/119 (28%), Positives = 63/119 (52%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MA ++RC FVG + + ++ L + G V+ +++ DRETG+ +G+GF + +E
Sbjct: 1 MADVEYRC-FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEA 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHG 119
A + G +++GR + V+ A++ + +D G GG G Q++ GG +G
Sbjct: 60 MRQAIEAMNGQDLDGRNITVNEAQSRR-SDGGGGFGGGGGGYGG----QRREGGGGGYG 113
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 165 (63.1 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 69 QGYEINGRQLRVDFAENDKGADRNRE 94
G +I GR +RVD N + + +
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPQESED 123
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/86 (37%), Positives = 47/86 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FV PY TE L+ + + G VV+ L+ D +TGK KG+ F Y+D+ + + A NL
Sbjct: 36 IFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNL 95
Query: 69 QGYEINGRQLRVDFAENDKGADRNRE 94
G +I R LRVD + K N +
Sbjct: 96 NGIKILDRTLRVDHVADYKPPKENEK 121
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/91 (35%), Positives = 53/91 (58%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG + ++ TEE L ++ + G V +V DRE+ + +G+GF +++ E A A +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGG 99
G ++GRQ+RVD A K ++ R RGG
Sbjct: 68 NGKSVDGRQIRVDQA--GKSSNDRRGGYRGG 96
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 35/99 (35%), Positives = 54/99 (54%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +FVG + ++ E+ L + GP+ +V DRET + +G+GF + + E A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
A R + G ++GRQ+RVD A K A +R GG G
Sbjct: 62 DAMRAMNGESLDGRQIRVDHA--GKSARGSRGGAFGGRG 98
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 137 (53.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVGN+ D +EQL ++ + G + L+ +R TG+ KGY F +Y+ + A +A+ +L
Sbjct: 402 LFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKLQASTAKSSL 461
Query: 69 QGYEINGRQLRVDFAEN 85
N R LRVD+AEN
Sbjct: 462 GSIVFNRRTLRVDWAEN 478
Score = 97 (39.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLI-EICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 59
M S + +FV +P + ++ ++ G + V+ G+P+G+ F +Y + E
Sbjct: 482 MESMHSKTIFVDRLPRSFADVPILRKVFSPFGKIKDCN-VVPNYYGQPRGFAFIDYNNVE 540
Query: 60 TALSARRNLQGYEINGRQLRVDFAENDK 87
A A+R + ++ G ++RV+FA K
Sbjct: 541 DAEKAQRMMNEKDLKGYKIRVNFANPSK 568
Score = 85 (35.0 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 67/296 (22%), Positives = 102/296 (34%)
Query: 96 GRGGPGMAAI--VDP-QKQLGGPAIH---GESVHHQPIGLHIAIXXXXXXXXXXXXXQVG 149
GRGG G+ + P + GGP H G HH P+ LH +
Sbjct: 643 GRGGRGVGGVNGSGPIAMERGGPMHHQPYGPPPHHGPM-LHQSGYGSQMQHQFSQMQHQH 701
Query: 150 VQSNQNGIQSQLASPNDPLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXXXX 209
+Q Q P P ++L S+ ++ S + N +Q
Sbjct: 702 YNEHQRN-QGAFYPPPPPPHMNLPMQSQQGYPQVNSMSVPQSNNNPLINQQANLQAQQLA 760
Query: 210 XXXFQAQIMLGMATPQ-----VLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKM 264
Q Q+M Q Q ++ Q Q + ++ QQ+ A L Q+
Sbjct: 761 SAQVQIQLMEQKLKGQESLIRAAQQKVV-QAQQQAQQQVQREKQQREALLRQQQQQQQQQ 819
Query: 265 QLMPKVQEAQIQLHNQFSAATQ-PTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHP 323
Q + QE Q + Q L Q Q Q A+ Q QQA Q
Sbjct: 820 QQQQQQQERQRKQQEALQKQQQIQQLQQQQQQQQQAQQQQQQQAQQQAQQQSQQQAQQQQ 879
Query: 324 SVRPQI---QLANSSSLNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSSFLP 376
S + Q Q+ N++S N+Q S + SA+N QN ++ + + F P
Sbjct: 880 SQQMQGFYGQMNNANS-NKQTGAQSTISPNTASATN--QNNFSHQSAANWQGYFTP 932
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 164 (62.8 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQ 95
G +I GR +RVD N + A ++ E+
Sbjct: 98 NGIKIKGRTIRVDHVSNYR-APKDSEE 123
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 164 (62.8 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 96
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQ 95
G +I GR +RVD N + A ++ E+
Sbjct: 97 NGIKIKGRTIRVDHVSNYR-APKDSEE 122
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 133 (51.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L EI + GP +S R++ D ++GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ KG +R E R
Sbjct: 252 NGKEMNGKQVYVGRAQK-KG-ERQTELKR 278
Score = 96 (38.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ D TE L E GP++S R+ D T + GY + ++ A A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 QGYEINGRQLRVDFAEND 86
I GR +R+ +++ D
Sbjct: 73 NFDVIKGRPVRIMWSQRD 90
Score = 89 (36.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+ N+ + L + G ++S ++V D E G KGYGF ++ E A A +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETHEAAERAIEKM 158
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQG 96
G +N R++ V ++ K +R E G
Sbjct: 159 NGMLLNDRKVFVGRFKSRK--EREAEMG 184
Score = 84 (34.6 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 34/135 (25%), Positives = 62/135 (45%)
Query: 252 AQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQ-PTLHPQIQLPQNAKNQAL----QQ 306
AQ+ G+P + + P V+ Q ++ Q Q P +H Q Q P A A +Q
Sbjct: 502 AQVRGVP----QYKYAPGVRNPQQRMPTQPQVPMQQPAVHVQGQEPLTASMLAAAPPQEQ 557
Query: 307 ASLPGQSGIPMLPSMHPSVRPQI-----QLANSSSLNQQVHPPSLENQVQVSASNLGQNT 361
+ G+ P++ +MHPS+ +I ++ NS L+ P SL ++V + + L +
Sbjct: 558 KQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 617
Query: 362 WTKLPNSAMRSSFLP 376
+ ++ S +P
Sbjct: 618 AKEAAQKSVPSPAVP 632
Score = 56 (24.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 35/170 (20%), Positives = 62/170 (36%)
Query: 365 LPNSAMRSSFLPHPPSSD--AGFQPGPSTSAGIGQTVSRDAERSARVPEDGTRAHRNNAY 422
+PN + + + P PPS A + +A + S R G R
Sbjct: 392 VPNPVL-NPYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWATQGVRPQHFQNM 450
Query: 423 TNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
N ++ ++ R +P+ S +++ T G+ ++G + + P+Q G
Sbjct: 451 PNAAVRPSAPRPQTFNPVRPASQVPRMM-TSQRMGSQ-AMGPRPAAAGAATGPAQVRG-- 506
Query: 483 LVP-VNQVPKVEEVQYSEKQIPQISPDVESALLQQVLSLTPEQLNSLPPE 531
VP P V Q PQ+ + +Q LT L + PP+
Sbjct: 507 -VPQYKYAPGVRNPQQRMPTQPQVPMQQPAVHVQGQEPLTASMLAAAPPQ 555
Score = 52 (23.4 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 23/86 (26%), Positives = 32/86 (37%)
Query: 215 AQIMLGMATPQVLQMPILRQGPGHPAQP--LFQDGQQQVAQLPGLPPLAQKMQLMPKVQE 272
+Q M MA+ + + P+L P PA P F Q P +Q QL P +
Sbjct: 380 SQYMQRMASVRAVPNPVLN--PYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRW 437
Query: 273 AQIQLHNQ-FSAATQPTLHPQIQLPQ 297
A + Q F + P PQ
Sbjct: 438 ATQGVRPQHFQNMPNAAVRPSAPRPQ 463
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 133 (51.9 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L E+ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 84 NGKELNGKQIYVGRAQ--KKVERQTELKR 110
Score = 80 (33.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 270 VQEAQIQLHNQFSAATQ-PTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPS 324
V+ Q L+ Q A Q P +H Q Q P A A +Q + G+ P++ SMHP+
Sbjct: 350 VRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPT 409
Query: 325 VRPQI-----QLANSSSLNQQVHPPSLENQVQVSASNL 357
+ +I ++ NS L+ P SL ++V + + L
Sbjct: 410 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 447
Score = 54 (24.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 40/178 (22%), Positives = 72/178 (40%)
Query: 365 LPNSAMRSSFLPHPPSSD-AGFQPGPSTSAGIGQT--VSRDAERSARVPEDGTRAHRNNA 421
+PN + + + P PPS P A T +++ A S R G R H
Sbjct: 224 VPNPVI-NPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARPH---P 279
Query: 422 YTNMSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAF 479
+ NM + A+ R + + S +++ T+ + TS ++ +G P+ A
Sbjct: 280 FQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAA 331
Query: 480 GAGLVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
A V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 332 TAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQ 389
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 145 (56.1 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +FVG + ++ E+ L + GP+ +V DRET + +G+GF + + E A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
+A R + G ++GRQ+RVD A R G G G
Sbjct: 62 NAMRAMNGESLDGRQIRVDHAGKSARGTRGGAFGARGRG 100
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 164 (62.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQ 95
G +I GR +RVD N + A ++ E+
Sbjct: 98 NGIKIKGRTIRVDHVSNYR-APKDSEE 123
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 144 (55.7 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +FVG + ++ E+ L + GP+ +V DRET + +G+GF + + E A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
A R + G ++GRQ+RVD A R G G G
Sbjct: 62 DAMRAMNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRG 100
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 163 (62.4 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VG IP+D TE L+ + + G +V L+ D+ TGK KG+ F Y+D+ + + A NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 69 QGYEINGRQLRVD----FAENDKGADRNREQGRGGPGM 102
G + GR ++VD + ++++ + R Q R G+
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEEDEETRRQNREARGV 135
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 143 (55.4 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 35/99 (35%), Positives = 53/99 (53%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +FVG + ++ E+ L + GP+ +V DRET + +G+GF + + E A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
A R + G ++GRQ+RVD A K A R G G G
Sbjct: 62 VAMRAMNGESLDGRQIRVDHA--GKSARGTRGGGFGAHG 98
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 161 (61.7 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 37/101 (36%), Positives = 59/101 (58%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M+SS+ +F+G + Y E+ L E + G VV R+++DRETG+ +G+GF + E
Sbjct: 37 MSSSK---LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEA 93
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
A SA + L G +++GR ++V++A DR G GG G
Sbjct: 94 ASSAIQALDGRDLHGRVVKVNYAN-----DRTSGGGFGGGG 129
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 160 (61.4 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 37/101 (36%), Positives = 62/101 (61%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M+SS+ +FVG I Y E L E + G VV ++++DRETG+ +G+ F + E
Sbjct: 31 MSSSK---IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEE 87
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
A +A + L G +++GR++RV++A ++G+ +G GGPG
Sbjct: 88 ASNAMQ-LDGQDLHGRRIRVNYA-TERGSGFGG-RGFGGPG 125
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 133 (51.9 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L E+ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 188 NGKELNGKQIYVGRAQ--KKVERQTELKR 214
Score = 89 (36.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+ N+ + L + G ++S ++V D E G KGYGF ++ +E A A +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKM 94
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQG 96
G +N R++ V ++ K +R E G
Sbjct: 95 NGMLLNDRKVFVGRFKSRK--EREAELG 120
Score = 80 (33.2 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 270 VQEAQIQLHNQFSAATQ-PTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPS 324
V+ Q L+ Q A Q P +H Q Q P A A +Q + G+ P++ SMHP+
Sbjct: 454 VRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPT 513
Query: 325 VRPQI-----QLANSSSLNQQVHPPSLENQVQVSASNL 357
+ +I ++ NS L+ P SL ++V + + L
Sbjct: 514 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 551
Score = 54 (24.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 40/178 (22%), Positives = 72/178 (40%)
Query: 365 LPNSAMRSSFLPHPPSSD-AGFQPGPSTSAGIGQT--VSRDAERSARVPEDGTRAHRNNA 421
+PN + + + P PPS P A T +++ A S R G R H
Sbjct: 328 VPNPVI-NPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARPH---P 383
Query: 422 YTNMSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAF 479
+ NM + A+ R + + S +++ T+ + TS ++ +G P+ A
Sbjct: 384 FQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAA 435
Query: 480 GAGLVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
A V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 436 TAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPPQ 493
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 158 (60.7 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 38/117 (32%), Positives = 63/117 (53%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAEN-DKGADRNREQGRGGP--GMAAIVDPQKQLGG 114
A A + G ++GRQ+RVD A D+G NR + R G G + Q GG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQAGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGG 116
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 161 (61.7 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 96
Query: 69 QGYEINGRQLRVDFAENDKGADRNRE 94
G +I GR +RVD N + + +
Sbjct: 97 NGIKIKGRTIRVDHVANYRAPQESED 122
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 161 (61.7 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 69 QGYEINGRQLRVDFAENDKGADRNRE 94
G +I GR +RVD N + + +
Sbjct: 98 NGIKIKGRTIRVDHVANYRAPQESED 123
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 161 (61.7 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 69 QGYEINGRQLRVDFAEN 85
G +I GR +RVD N
Sbjct: 98 NGIKIKGRTIRVDHVSN 114
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 161 (61.7 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 69 QGYEINGRQLRVDFAEN 85
G +I GR +RVD N
Sbjct: 98 NGIKIKGRTIRVDHVSN 114
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 141 (54.7 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ Y+ATE+ L + G V S ++ D ETG+ KG G+ EE A A L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 69 QGYEINGRQLRVDFAENDKGADRNR-EQGRGGPG 101
G + R + V A K A R +G+ GPG
Sbjct: 65 DGALLRNRVITVSVARPQKQATRPAPRRGKPGPG 98
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 141 (54.7 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ Y+ATE+ L + G V S ++ D ETG+ KG G+ EE A A L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 69 QGYEINGRQLRVDFAENDKGADRNR-EQGRGGPG 101
G + R + V A K A R +G+ GPG
Sbjct: 65 DGALLRNRVITVSVARPQKQATRPAPRRGKPGPG 98
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FV NI + E L++I E G + + L IDR TG KGY EY+ A A +N
Sbjct: 73 IFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEKRSEAEDAIKNG 132
Query: 69 QGYEINGRQLRVDFA 83
GYE+ G +L VD+A
Sbjct: 133 SGYELAGLKLSVDWA 147
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 33/105 (31%), Positives = 55/105 (52%)
Query: 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 64
+H+ +F+ +P+ T+E+L EIC+ G V RLV +R GKPKG + EY++E A A
Sbjct: 39 KHK-LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQA 96
Query: 65 RRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQ 109
+ G I ++V + + + + R PG ++ PQ
Sbjct: 97 VMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLL-PQ 140
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 9 VFVGNIPYDATEEQLIE-ICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 67
+FVG + +D T+EQ +E + + G + +V DRET + +G+GF +++ E A A
Sbjct: 8 LFVGGLSFD-TDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 68 LQGYEINGRQLRVDFA---ENDK-GADRNREQGRGGPG 101
+ G ++GRQ+RVD A ND+ G R G GG G
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSNDRRGGYRGGSSG-GGRG 103
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +FVG + ++ E+ L + GP+ +V DRET + +G+GF + + E A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
R + G ++GRQ+RVD A R G G G
Sbjct: 62 DVMRAMNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRG 100
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G + +D TE+ L + + G + + + +RET + +G+GF +++ + A A +
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQG----RGGPG 101
G ++GR +RVD A G R G RGG G
Sbjct: 67 NGKSVDGRTIRVDEAGKGGGGGGGRSGGGGSYRGGGG 103
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 151 (58.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G + YD TE+ L E + G + ++ DRET + +G+GF +++ E A A +
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
G +++GR +RVD A G G RGG
Sbjct: 85 NGKQVDGRMIRVDEAGKSGGRSGGFRGGSRGG 116
>POMBASE|SPBC887.05c [details] [associations]
symbol:cwf29 "RNA-binding protein Cwf29" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
Uniprot:O94290
Length = 217
Score = 146 (56.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+++GN+ +D E+ ++ + E G V LV D+ETGK KG+ F +Y+D+ + + A N+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 69 QGYEINGRQLRVDFAENDKGADRNRE 94
++ R +RVD + K + +E
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEKE 118
Score = 38 (18.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 446 PSKIVKTEDGSGTSFSVGALNVS 468
P+ +V + SG+S SV +N S
Sbjct: 119 PANLVPLGE-SGSSLSVSTINTS 140
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 139 (54.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A+ R +FVGN+ TEE L E+ + GPV+ ++ D++ GKPK + F +K E +
Sbjct: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
Query: 62 LSARRNLQGYEINGRQLRVDF 82
A L G ++ GR +++ F
Sbjct: 64 PYAMNLLNGIKLYGRPIKIQF 84
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 138 (53.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+ VG + +D E+ L ++ + G + +V DRET + +G+GF +++ + A A +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
G ++GRQ+RVD A K ++ NR +G RGG
Sbjct: 68 NGKSVDGRQIRVDQA--GKSSE-NRSRGYRGG 96
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 138 (53.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+ VG + +D E+ L ++ + G + +V DRET + +G+GF +++ + A A +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
G ++GRQ+RVD A K ++ NR +G RGG
Sbjct: 68 NGKSVDGRQIRVDQA--GKSSE-NRSRGYRGG 96
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 138 (53.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + + L+ D +TG+ KGYGF + D E A A L
Sbjct: 15 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 74
Query: 69 QGYEINGRQLRVDFAEN--DKGAD 90
G+E+ GR +RV D G D
Sbjct: 75 NGFELAGRPMRVGHVTERLDGGTD 98
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 131 (51.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG + +ATE+ + + G V+ L+ID++TG+P+G+GF + D E A+ A +
Sbjct: 196 IFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTF-DSEAAVEAALS- 253
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGG 99
+ EI G+ + V A+ + ++GR G
Sbjct: 254 RPLEILGKTIEVKKAQPRGNLRDDGDRGRRG 284
Score = 91 (37.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
+F+G + ++ T++ L E + G V ++ D TG+ +G+GF +KD +T
Sbjct: 112 MFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKT 163
Score = 77 (32.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 57/244 (23%), Positives = 98/244 (40%)
Query: 246 DGQQQVA--QLPGLPP--LAQKM--QLMPKVQEAQIQLHNQFS-AATQPTLHPQIQLPQN 298
DG QQ A Q G+ P L +M Q ++Q+ + Q + AATQ +
Sbjct: 296 DGSQQQAGAQGQGVMPGGLTPQMMAQYWQRMQQYFALMQQQMAVAATQG--QGMGAMGMA 353
Query: 299 AKNQAL-QQASLPGQSGIPMLPSMH-PSVRPQIQLANSSSLNQQVHPPSLENQVQVSASN 356
N AL QQ + + M + PS+ P Q S+ ++P ++ Q+Q N
Sbjct: 354 GMNPALMQQMQMKQLQQMQMGNNQQSPSMSPPAQSPTPQSMQNMMNPAMMQ-QMQQQMPN 412
Query: 357 LGQ--NTWTKLPNSAMRSSFLPHPPSSDAGFQPGPSTSAGIGQTVSRDAERSARVPEDGT 414
GQ N ++ S + + G + GP +A + ++ + ++ + +
Sbjct: 413 QGQANNMGGQMGMGGNGSGNMNMGSNYAGGGRGGPGYNAH--EQIAFEQQKYEQ--QQAR 468
Query: 415 RAHRNNAYTNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSA 474
RA N A++ G + + D + P+ I S SVG +P G+A
Sbjct: 469 RAMENRAFSPYQQGGPTSWEGM---YDEVPQPN-IPTGPQAMNRSSSVGRGQTPQPQGAA 524
Query: 475 PSQA 478
P+ A
Sbjct: 525 PANA 528
Score = 37 (18.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 96 GRGGPGMAA 104
GRGGPG A
Sbjct: 443 GRGGPGYNA 451
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 133 (51.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L E+ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 252 NGKELNGKQIYVGRAQ--KKVERQTELKR 278
Score = 92 (37.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ D TE L E GP++S R+ D T + GY + ++ A A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 QGYEINGRQLRVDFAEND 86
I G+ +R+ +++ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 76 (31.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHPS+ +I ++ NS
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSEL 593
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 630
Score = 53 (23.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 392 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 449
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 450 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAAAAA 501
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 502 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 556
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 37/143 (25%), Positives = 53/143 (37%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT 507
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQL 331
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 508 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK 559
Query: 332 ANSSS----LNQQVHPPSLENQV 350
L Q +HP SL ++
Sbjct: 560 QMLGERLFPLIQAMHP-SLAGKI 581
Score = 47 (21.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 381 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 431
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANS 334
+ +++A +P HP +P A A A P S + S P V ++AN+
Sbjct: 432 RPSPRWTAQGARP--HPFQNMP-GAIRPA---APRPPFSTMRPASSQVPRVMSTQRVANT 485
Query: 335 SSLNQQVHP 343
S+ P
Sbjct: 486 STQTMGPRP 494
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 133 (51.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L E+ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 252 NGKELNGKQIYVGRAQ--KKVERQTELKR 278
Score = 92 (37.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ D TE L E GP++S R+ D T + GY + ++ A A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 QGYEINGRQLRVDFAEND 86
I G+ +R+ +++ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 76 (31.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHPS+ +I ++ NS
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSEL 593
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 630
Score = 51 (23.0 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 392 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 449
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 450 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAATAA 501
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 502 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 556
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 37/143 (25%), Positives = 53/143 (37%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRT 507
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQL 331
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 508 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK 559
Query: 332 ANSSS----LNQQVHPPSLENQV 350
L Q +HP SL ++
Sbjct: 560 QMLGERLFPLIQAMHP-SLAGKI 581
Score = 47 (21.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 381 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 431
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANS 334
+ +++A +P HP +P A A A P S + S P V ++AN+
Sbjct: 432 RPSPRWTAQGARP--HPFQNMP-GAIRPA---APRPPFSTMRPASSQVPRVMSTQRVANT 485
Query: 335 SSLNQQVHP 343
S+ P
Sbjct: 486 STQTMGPRP 494
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 139 (54.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A+ R +FVGN+ TEE L E+ + GPV+ ++ D++ GKPK + F +K E +
Sbjct: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADR 91
A L G ++ GR +++ F A +
Sbjct: 64 PYAMNLLNGIKLFGRPIKIQFRAGSSHASQ 93
Score = 54 (24.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 297 QNAKNQALQQASLPGQSGIPMLPS--MHPSVRPQIQLANSSSLNQ-QVHPPSLENQVQVS 353
Q N L+Q S G+ G P L PS + N SS +Q + PS + +V+++
Sbjct: 141 QAVMNNVLRQMSYGGKFGSPHLDQSGFSPSAQSHNHTFNQSSSSQWRQDTPSSQRKVRLN 200
Query: 354 A 354
+
Sbjct: 201 S 201
>UNIPROTKB|F8W0K0 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021052
ProteinModelPortal:F8W0K0 SMR:F8W0K0 Ensembl:ENST00000551002
ArrayExpress:F8W0K0 Bgee:F8W0K0 Uniprot:F8W0K0
Length = 170
Score = 136 (52.9 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 10 FVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKP---KGYGFCEYKDEETALSARR 66
F+GN+PYD TEE + E R + + + RL RE P KG+G+ E++D ++ LSA
Sbjct: 53 FLGNLPYDVTEESIKEFFRGLN-ISAVRL--PREPSNPERLKGFGYAEFEDLDSLLSAL- 108
Query: 67 NLQGYEINGRQLRVDFAENDKGADRN-REQGR 97
+L + R++RVD A+ + DR+ R GR
Sbjct: 109 SLNEESLGNRRIRVDVADQAQDKDRDDRSFGR 140
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 136 (52.9 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVD 81
A A + G ++GRQ+RVD
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVD 80
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 136 (52.9 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 35/96 (36%), Positives = 51/96 (53%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEY--KDEE 59
ASS + ++VGN+PY A E + E+ E G V + RL+ D+ TGK +G+GF +
Sbjct: 59 ASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQ 118
Query: 60 TALSARRNLQGYEINGRQLRVDFAENDKGADRNREQ 95
TA+ A L E R L+V A + K + EQ
Sbjct: 119 TAIDA---LNEKEYMQRTLKVRIANDPKSDEEMAEQ 151
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 136 (52.9 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 35/96 (36%), Positives = 51/96 (53%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEY--KDEE 59
ASS + ++VGN+PY A E + E+ E G V + RL+ D+ TGK +G+GF +
Sbjct: 59 ASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQ 118
Query: 60 TALSARRNLQGYEINGRQLRVDFAENDKGADRNREQ 95
TA+ A L E R L+V A + K + EQ
Sbjct: 119 TAIDA---LNEKEYMQRTLKVRIANDPKSDEEMAEQ 151
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 154 (59.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>ASPGD|ASPL0000074275 [details] [associations]
symbol:AN4665 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
ProteinModelPortal:Q5B465 STRING:Q5B465
EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
OMA:VFSQNRY Uniprot:Q5B465
Length = 279
Score = 153 (58.9 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+++G +P+D +E ++ I + G V LV D+ETGK +G+ F +Y+D+ + A NL
Sbjct: 35 IYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLAVDNL 94
Query: 69 QGYEINGRQLRVD---FAENDKGADRN 92
G + GR LRVD + + D+ D N
Sbjct: 95 GGATVLGRVLRVDHTRYKKRDEDEDTN 121
>UNIPROTKB|I3LK87 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
Uniprot:I3LK87
Length = 312
Score = 154 (59.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 32/90 (35%), Positives = 55/90 (61%)
Query: 9 VFVGNIPYDATEEQLIEICREV---GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 65
+F+G +PY+ TE +I + ++ G +V+ LV D++TGK KG+ F Y+D+ + + A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQINRYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 97
Query: 66 RNLQGYEINGRQLRVDFAENDKGADRNREQ 95
N G +I GR +RVD N + A ++ E+
Sbjct: 98 DNFNGIKIKGRTIRVDHVSNYR-APKDSEE 126
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 138 (53.6 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+ VG + +D E+ L ++ + G + +V DRET + +G+GF +++ + A A +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
G ++GRQ+RVD A K ++ NR +G RGG
Sbjct: 68 NGKSVDGRQIRVDQA--GKSSE-NRSRGYRGG 96
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 135 (52.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 31/99 (31%), Positives = 51/99 (51%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G + + TE+ L E + G VV ++V+DR + + KG+GF + + A A
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 69 QGYEINGRQLRVDFAENDK--GADRNREQGRGGPGMAAI 105
G ++NGR + VD+A+ + G RG P A I
Sbjct: 96 NGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDPAVI 134
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 134 (52.2 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 31/113 (27%), Positives = 56/113 (49%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G + ++ E+ L + + G + +V DRET + +G+GF +++ + A A +
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGES 121
G ++GRQ+RVD A G R +G G + + GG +G S
Sbjct: 67 NGKSVDGRQIRVDQAGKSSGERRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSS 119
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 134 (52.2 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+PY E ++ + E GPV S RLV DR+TG+ KG+GF E E A A L
Sbjct: 66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMS-EAGAQKAMVKL 124
Query: 69 QGYEINGRQLRVDFA--ENDKGADR 91
+ R L+V A ++ + ADR
Sbjct: 125 NDFNFQERTLKVREAKTQDSEAADR 149
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 134 (52.2 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+PY E ++ + E GPV S RLV DR+TG+ KG+GF E E A A L
Sbjct: 66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMS-EAGAQKAMVKL 124
Query: 69 QGYEINGRQLRVDFA--ENDKGADR 91
+ R L+V A ++ + ADR
Sbjct: 125 NDFNFQERTLKVREAKTQDSEAADR 149
>UNIPROTKB|P57052 [details] [associations]
symbol:RBM11 "Splicing regulator RBM11" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AP001660 EMBL:AK091331
EMBL:BC030196 EMBL:AY077695 EMBL:AF519623 IPI:IPI00025663
IPI:IPI00855847 RefSeq:NP_658983.3 UniGene:Hs.283828 PDB:2YWK
PDBsum:2YWK ProteinModelPortal:P57052 SMR:P57052 IntAct:P57052
MINT:MINT-1452231 DMDM:9978670 PRIDE:P57052 DNASU:54033
Ensembl:ENST00000400577 GeneID:54033 KEGG:hsa:54033 UCSC:uc002yjn.4
CTD:54033 GeneCards:GC21P015588 HGNC:HGNC:9897 HPA:HPA045885
neXtProt:NX_P57052 PharmGKB:PA34260 eggNOG:NOG245318
HOGENOM:HOG000146448 HOVERGEN:HBG061506 InParanoid:P57052
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 PhylomeDB:P57052
EvolutionaryTrace:P57052 GenomeRNAi:54033 NextBio:56316
ArrayExpress:P57052 Bgee:P57052 CleanEx:HS_RBM11
Genevestigator:P57052 GermOnline:ENSG00000185272 Uniprot:P57052
Length = 281
Score = 124 (48.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGN+ EE L E+ + GP+ + DRE GKPK +GF +K E+ A
Sbjct: 10 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIA 68
Query: 67 NLQGYEINGRQLRVDF 82
L G + GR + V +
Sbjct: 69 LLNGIRLYGRPINVQY 84
Score = 70 (29.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 26/63 (41%), Positives = 32/63 (50%)
Query: 331 LANSSSLNQQV-HPPSLE--------NQVQVSASNLGQNTWTKLPNSAMRSSFLPHPPSS 381
L NS+S++ + H P LE Q S S+L Q T LPNSA SS L H P
Sbjct: 164 LPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSDLYQMT-APLPNSASVSSSLNHVPDL 222
Query: 382 DAG 384
+AG
Sbjct: 223 EAG 225
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 140 (54.3 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A+ R +FVGN+ TEE L E+ + GPV+ ++ D++ GKPK + F +K E +
Sbjct: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADR 91
A L G ++ GR +++ F A +
Sbjct: 64 PYAMNLLNGIKLFGRPIKIQFRSGSSHASQ 93
Score = 50 (22.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 297 QNAKNQALQQASLPGQSGIPML-PS-MHPSVRPQIQLANSSS 336
Q N L+Q S G+ G P L PS PSV+ N SS
Sbjct: 144 QAVMNNVLRQMSYGGKFGSPHLDPSGFSPSVQSHNHSFNQSS 185
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 133 (51.9 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+ NI +A+EE + ++ E G + +F L +DR TG KGY EY A A + L
Sbjct: 44 IIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEAAEAIKEL 103
Query: 69 QGYEINGRQLRVDFA-ENDKGADRNREQGRGGPG 101
G ++ + + VD+A +++ + GRGG G
Sbjct: 104 NGTKLLDQTIEVDYAFVRPPPSNKGKSGGRGGRG 137
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 130 (50.8 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L ++ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 207 NGKELNGKQIYVGRAQ--KKVERQTELKR 233
Score = 73 (30.8 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ NS
Sbjct: 489 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 548
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 549 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 585
Score = 53 (23.7 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 347 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 404
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 405 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAAAAA 456
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 457 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 511
Score = 48 (22.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 31/119 (26%), Positives = 44/119 (36%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 403 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT 462
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQ 330
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 463 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 513
Score = 47 (21.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 336 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 386
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANS 334
+ +++A +P HP +P A A A P S + S P V ++AN+
Sbjct: 387 RPSPRWTAQGARP--HPFQNMP-GAIRPA---APRPPFSTMRPASSQVPRVMSTQRVANT 440
Query: 335 SSLNQQVHP 343
S+ P
Sbjct: 441 STQTMGPRP 449
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 130 (50.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L ++ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 252 NGKELNGKQIYVGRAQ--KKVERQTELKR 278
Score = 92 (37.4 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ D TE L E GP++S R+ D T + GY + ++ A A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 QGYEINGRQLRVDFAEND 86
I G+ +R+ +++ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 73 (30.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ NS
Sbjct: 494 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 553
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 554 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 590
Score = 53 (23.7 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 352 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 409
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 410 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAAAAA 461
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 462 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 516
Score = 48 (22.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 31/119 (26%), Positives = 44/119 (36%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 408 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT 467
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQ 330
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 468 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 518
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 130 (50.8 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L ++ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 220 NGKELNGKQIYVGRAQ--KKVERQTELKR 246
Score = 92 (37.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ D TE L E GP++S R+ D T + GY + ++ A A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 QGYEINGRQLRVDFAEND 86
I G+ +R+ +++ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 73 (30.8 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ NS
Sbjct: 502 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 561
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 562 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 598
Score = 53 (23.7 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 360 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 417
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 418 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAAAAA 469
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 470 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 524
Score = 48 (22.0 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 31/119 (26%), Positives = 44/119 (36%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 416 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT 475
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQ 330
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 476 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 526
Score = 47 (21.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 349 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 399
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANS 334
+ +++A +P HP +P A A A P S + S P V ++AN+
Sbjct: 400 RPSPRWTAQGARP--HPFQNMP-GAIRPA---APRPPFSTMRPASSQVPRVMSTQRVANT 453
Query: 335 SSLNQQVHP 343
S+ P
Sbjct: 454 STQTMGPRP 462
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 132 (51.5 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +F+G + ++ E+ L + GP+ +V DRET + +G+ F + + E A
Sbjct: 2 SSEEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRN---REQGRG 98
A R + G ++GRQ+RVD A R R GRG
Sbjct: 62 DAMRPMNGKSLDGRQIRVDHAGKLARGTRGCAFRAHGRG 100
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 130 (50.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L ++ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 252 NGKELNGKQIYVGRAQ--KKVERQTELKR 278
Score = 96 (38.9 bits), Expect = 0.00038, Sum P(2) = 0.00037
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ DATE L E GP++S R+ D T + GY + ++ A A +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 QGYEINGRQLRVDFAEND 86
I G+ +R+ +++ D
Sbjct: 73 NFDVIKGKPVRIMWSQRD 90
Score = 73 (30.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ NS
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 593
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 630
Score = 53 (23.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 392 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 449
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 450 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAAAAA 501
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 502 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 556
Score = 48 (22.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 31/119 (26%), Positives = 44/119 (36%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT 507
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQ 330
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 508 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 558
Score = 47 (21.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 381 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 431
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANS 334
+ +++A +P HP +P A A A P S + S P V ++AN+
Sbjct: 432 RPSPRWTAQGARP--HPFQNMP-GAIRPA---APRPPFSTMRPASSQVPRVMSTQRVANT 485
Query: 335 SSLNQQVHP 343
S+ P
Sbjct: 486 STQTMGPRP 494
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 130 (50.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L ++ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 252 NGKELNGKQIYVGRAQ--KKVERQTELKR 278
Score = 73 (30.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ NS
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 593
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 630
Score = 53 (23.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 392 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 449
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 450 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAAAAA 501
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 502 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 556
Score = 48 (22.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 31/119 (26%), Positives = 44/119 (36%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT 507
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQ 330
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 508 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 558
Score = 47 (21.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 381 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 431
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANS 334
+ +++A +P HP +P A A A P S + S P V ++AN+
Sbjct: 432 RPSPRWTAQGARP--HPFQNMP-GAIRPA---APRPPFSTMRPASSQVPRVMSTQRVANT 485
Query: 335 SSLNQQVHP 343
S+ P
Sbjct: 486 STQTMGPRP 494
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 130 (50.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L ++ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 252 NGKELNGKQIYVGRAQ--KKVERQTELKR 278
Score = 73 (30.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ NS
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 593
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 630
Score = 53 (23.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 392 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 449
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 450 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAAAAA 501
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 502 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 556
Score = 48 (22.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 31/119 (26%), Positives = 44/119 (36%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT 507
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQ 330
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 508 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 558
Score = 47 (21.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 381 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 431
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANS 334
+ +++A +P HP +P A A A P S + S P V ++AN+
Sbjct: 432 RPSPRWTAQGARP--HPFQNMP-GAIRPA---APRPPFSTMRPASSQVPRVMSTQRVANT 485
Query: 335 SSLNQQVHP 343
S+ P
Sbjct: 486 STQTMGPRP 494
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 130 (50.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L ++ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 252 NGKELNGKQIYVGRAQ--KKVERQTELKR 278
Score = 73 (30.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ NS
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 593
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 630
Score = 53 (23.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 392 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 449
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 450 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAAAAA 501
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 502 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 556
Score = 48 (22.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 31/119 (26%), Positives = 44/119 (36%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT 507
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQ 330
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 508 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 558
Score = 47 (21.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 381 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 431
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANS 334
+ +++A +P HP +P A A A P S + S P V ++AN+
Sbjct: 432 RPSPRWTAQGARP--HPFQNMP-GAIRPA---APRPPFSTMRPASSQVPRVMSTQRVANT 485
Query: 335 SSLNQQVHP 343
S+ P
Sbjct: 486 STQTMGPRP 494
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 130 (50.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L ++ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 252 NGKELNGKQIYVGRAQ--KKVERQTELKR 278
Score = 73 (30.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ NS
Sbjct: 534 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 593
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 630
Score = 53 (23.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 39/175 (22%), Positives = 75/175 (42%)
Query: 375 LPHPPSSDAGFQPGPSTS---AGIGQTVSRDA----ERSARV---PEDGTRAHRNNAYTN 424
+P+P + +QP P + A I QT +R A + A++ P + R + + N
Sbjct: 392 VPNPVINP--YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQN 449
Query: 425 MSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFGAG 482
M + A+ R + + S +++ T+ + TS ++ +G P+ A A
Sbjct: 450 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTS--------TQTMGPRPAAAAAAA 501
Query: 483 LVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 502 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 556
Score = 48 (22.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 31/119 (26%), Positives = 44/119 (36%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQV---AQLPGLPPLAQKMQLMPKVQE 272
Q M G P + P P P Q+ Q G P A P V+
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRT 507
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQ 330
+++A + +PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 508 VP---QYKYAAGVR---NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 558
Score = 47 (21.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 33/129 (25%), Positives = 52/129 (40%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 381 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 431
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVRPQIQLANS 334
+ +++A +P HP +P A A A P S + S P V ++AN+
Sbjct: 432 RPSPRWTAQGARP--HPFQNMP-GAIRPA---APRPPFSTMRPASSQVPRVMSTQRVANT 485
Query: 335 SSLNQQVHP 343
S+ P
Sbjct: 486 STQTMGPRP 494
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 130 (50.8 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L ++ + GP +S +++ D E+GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+Q+ V A+ K +R E R
Sbjct: 252 NGKELNGKQIYVGRAQ--KKVERQTELKR 278
Score = 73 (30.8 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 286 QPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANSSS 336
QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ NS
Sbjct: 545 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 604
Query: 337 LNQQVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSS 373
L+ P SL ++V + + L + + A+ S+
Sbjct: 605 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 641
Score = 62 (26.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 40/180 (22%), Positives = 72/180 (40%)
Query: 365 LPNSAMRSSFLPHPPSSD--AGFQPGPSTSAGIGQTVSRDAERSARVPEDGTRAHRNNAY 422
+PN + + + P PPS A + +A + S R G R H +
Sbjct: 392 VPNPVI-NPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH---PF 447
Query: 423 TNMSMGL--ASKRSTVNDPLDSISHPSKIVKTEDGS-GTSFSV-GALNVS-KPIGSAPSQ 477
NM + A+ R + + S +++ T+ G F + + N S + +G P+
Sbjct: 448 QNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVEVGLQFEITSSANTSTQTMGPRPAA 507
Query: 478 AFGAGLVPVNQVPKVEE---VQYSEKQI---PQISPDVESALLQQVLSLTPEQLNSLPPE 531
A A V VP+ + V+ ++ + PQ++ + +Q LT L S PP+
Sbjct: 508 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQ 567
Score = 54 (24.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 30/134 (22%), Positives = 56/134 (41%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQI 275
Q M MA+ + + P++ P PA P G A +P + P Q AQ+
Sbjct: 381 QYMQRMASVRAVPNPVIN--PYQPAPP---SGYFMAA----IPQTQNRAAYYPPSQIAQL 431
Query: 276 QLHNQFSA-ATQPTLHPQIQLPQNAKNQALQ---QASLPGQSGIP-MLPSMHPSVRPQIQ 330
+ +++A +P HP +P + A + P S +P ++ + V Q +
Sbjct: 432 RPSPRWTAQGARP--HPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVEVGLQFE 489
Query: 331 LANSSSLNQQVHPP 344
+ +S++ + Q P
Sbjct: 490 ITSSANTSTQTMGP 503
Score = 44 (20.5 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 290 HPQIQLPQNAKNQA-LQQASLPGQSGIPMLPSMHPSVRPQIQ 330
+PQ L NA+ Q +QQ ++ Q P+ SM S PQ Q
Sbjct: 530 NPQQHL--NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 569
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 149 (57.5 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+++GNIPY++T+ L + +++ + R+ +DR TG P+G+ ++KD E+A A +
Sbjct: 171 LYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKV 230
Query: 69 QGYEINGRQLRVDFA 83
+ E+ GR LRVD++
Sbjct: 231 KLMELMGRTLRVDYS 245
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 158 (60.7 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
VF+G PY+ TE +I + + G + + LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 69 QGYEINGRQLRVDFAEN 85
G +I GR +RVD N
Sbjct: 98 NGIKIKGRTIRVDHVAN 114
Score = 38 (18.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 469 KPIGSAPSQAFGAGLVPVNQVPKVEEVQYSEKQ 501
KP+ S+ ++ VPV + PK ++ + +K+
Sbjct: 139 KPVSSSEEESAEEYAVPVKK-PKKDKKEKKKKK 170
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 149 (57.5 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A S +R V+VGN+ + + L + E G VV R++ DR++G+ KG+GF Y +
Sbjct: 200 AGSGNR-VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258
Query: 62 LSARRNLQGYEINGRQLRVDFAE 84
+A ++L G +++GRQ+RV AE
Sbjct: 259 QNAIKSLDGADLDGRQIRVSEAE 281
Score = 132 (51.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVGN+P++ QL ++ G V ++ D+ TG+ +G+GF +A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 69 QGYEINGRQLRVD 81
GYE++GR LRV+
Sbjct: 153 NGYELDGRPLRVN 165
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 131 (51.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
+ S HR +FVGN+P+ ++L RE G VVS ++ D+ TG KGYGF + + T
Sbjct: 10 VGKSVHR-IFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSF-NSLT 67
Query: 61 ALSARRNLQGYEINGRQLRV 80
AL N Q + + G L +
Sbjct: 68 ALEKIENEQKHILEGNYLNI 87
>UNIPROTKB|D6R9M7 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00967035
ProteinModelPortal:D6R9M7 SMR:D6R9M7 Ensembl:ENST00000505414
HOGENOM:HOG000206189 ArrayExpress:D6R9M7 Bgee:D6R9M7 Uniprot:D6R9M7
Length = 159
Score = 131 (51.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 33/78 (42%), Positives = 43/78 (55%)
Query: 5 QHRC-VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
Q C VFVG IP D E++L+ + VG + RL++D + GK +GY F Y + A
Sbjct: 68 QRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKR 126
Query: 64 ARRNLQGYEIN-GRQLRV 80
A R L YEI GR L V
Sbjct: 127 AVRELNNYEIRPGRLLGV 144
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 131 (51.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 1 MASSQH-RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYK--D 57
+AS + R ++VGN+PY A E + E+ E G V S RL+ D+ TGK +G+GF E D
Sbjct: 64 IASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDD 123
Query: 58 EETALSARRNLQGYEINGRQLRVDFAEN--DKGADRNRE 94
+ A+SA L E R L+V A+ ++ D N++
Sbjct: 124 LDKAISA---LNDTEFQQRTLKVREAKERPERTEDNNQD 159
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 131 (51.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 1 MASSQH-RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYK--D 57
+AS + R ++VGN+PY A E + E+ E G V S RL+ D+ TGK +G+GF E D
Sbjct: 64 IASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDD 123
Query: 58 EETALSARRNLQGYEINGRQLRVDFAEN--DKGADRNRE 94
+ A+SA L E R L+V A+ ++ D N++
Sbjct: 124 LDKAISA---LNDTEFQQRTLKVREAKERPERTEDNNQD 159
>SGD|S000001444 [details] [associations]
symbol:IST3 "Component of the U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0000245 "spliceosomal complex
assembly" evidence=IMP] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IMP]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000384 "first spliceosomal
transesterification activity" evidence=IMP;IDA] [GO:0005686 "U2
snRNP" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0070274 "RES complex" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001444 GO:GO:0005737 GO:GO:0000166 EMBL:BK006942
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006406
EMBL:X79743 EMBL:Z38062 GO:GO:0000349 GO:GO:0000245 GO:GO:0070274
GO:GO:0005686 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
OrthoDB:EOG441TN4 EMBL:AY558081 PIR:S48439 RefSeq:NP_012270.1
ProteinModelPortal:P40565 SMR:P40565 DIP:DIP-2076N IntAct:P40565
MINT:MINT-389778 STRING:P40565 PaxDb:P40565 PeptideAtlas:P40565
EnsemblFungi:YIR005W GeneID:854821 KEGG:sce:YIR005W CYGD:YIR005w
GeneTree:ENSGT00600000084414 OMA:YGVPVDV NextBio:977669
Genevestigator:P40565 GermOnline:YIR005W Uniprot:P40565
Length = 148
Score = 131 (51.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+++GN+ + TE ++ + E G V L D TG+ +G+ + +Y+D+ + + A NL
Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92
Query: 69 QGYEINGRQLRVD 81
G++I GR L++D
Sbjct: 93 NGFKIGGRALKID 105
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 131 (51.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G + + E+ L + G V R+ D+ +G+ +G+GF ++ +E ALSA+ +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 69 QGYEINGRQLRVDFA-ENDKG 88
G + GR LR+ FA E +G
Sbjct: 103 DGKGLLGRPLRISFALERVRG 123
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 131 (51.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 29/94 (30%), Positives = 52/94 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FV + T++ L ++ G + RL+ D ET +PKG+GF + E+ A A ++L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 69 QGYEINGRQLRVDFAENDK----GADRNREQGRG 98
G ++GR + V+ A+N + G + N+ + RG
Sbjct: 69 DGKIVDGRLIFVEVAKNAEEVRAGINSNKAEDRG 102
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 131 (51.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG +P++ E L + G ++ +V DRETG+ +GYGF ++D E+A A +N
Sbjct: 54 IYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQNP 113
Query: 69 QGYEINGRQLRVDFA 83
+ I+GR+ + + A
Sbjct: 114 KPV-IDGREAKCNLA 127
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 141 (54.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 38/129 (29%), Positives = 62/129 (48%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A + + V+VGN+ Y AT E++ + G V + DR +G PKG+ + E+ ++E
Sbjct: 73 AEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGM 132
Query: 62 LSARRNLQGYEINGRQLRVDFAENDK-G-ADRNRE--QGRGGPGMAAIVDPQKQLGGPAI 117
+A + GRQ++VD +K G + NR +GRGG G ++ GG
Sbjct: 133 QNALAMTDSL-LRGRQIKVDPKRTNKPGMSTTNRPPFRGRGGRGRGNVIVKYVYAGGFRP 191
Query: 118 HGESVHHQP 126
G +P
Sbjct: 192 RGRGARRRP 200
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 149 (57.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 37/100 (37%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E V R+V DRETG KG+GF ++ EE A
Sbjct: 193 SQPSKTLFVKGLSEDTTEETLKE---SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAK 249
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 250 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 289
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VGN+P+D +L ++ E G VV R+V DRETG+ +G+GF D + A L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 69 QGYEINGRQLRVDFAE 84
G + GR +RV+ AE
Sbjct: 306 DGQNLEGRAIRVNVAE 321
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
S+ +FVGN+ YD + L + + G V ++ +RET + +G+GF + A +
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 64 ARRNLQGYEINGRQLRVDFA 83
A Y++NGR L V+ A
Sbjct: 207 AVEKFNRYDLNGRLLTVNKA 226
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 34/92 (36%), Positives = 48/92 (52%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+ V N+ +D +E L + GPV L D TG P+G+GF ++ D A A+ +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 69 QGYEINGRQLRVDFAE-NDKGADRNREQGRGG 99
GY + GR+L V FAE N K R + RGG
Sbjct: 99 DGYLLLGRELTVVFAEENRKKPTEMRTRDRGG 130
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 154 (59.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 39/100 (39%), Positives = 57/100 (57%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E G V + R+V DRETG KG+GF ++ EE A
Sbjct: 425 SQPSKTLFVKGLSEDTTEETLKESFE--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAK 481
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ KG R GRGG G
Sbjct: 482 TAKEAMEDGEIDGNKVTLDWAKPKGKGGFGGRGGGRGGFG 521
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 130 (50.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FV +I +A E+++ E + G + + L +DR TG KGY EY+ + AL+A+ L
Sbjct: 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134
Query: 69 QGYEINGRQLRVD--FAENDKGADRNREQGR 97
G EI G+ ++VD F + K ++ ++ R
Sbjct: 135 NGAEIMGQTIQVDWCFVKGPKRVKKSEKRRR 165
>UNIPROTKB|F1N209 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
Length = 246
Score = 124 (48.7 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGN+ EE L E+ + GP+ + DRE GKPK +GF +K E+ A
Sbjct: 10 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIA 68
Query: 67 NLQGYEINGRQLRVDF 82
L G + GR + V +
Sbjct: 69 LLNGIRLYGRPINVQY 84
Score = 59 (25.8 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 23/75 (30%), Positives = 30/75 (40%)
Query: 365 LPNSAMRSSFLPHPPSSDAG------FQPGPSTSAGIGQTVSRDAERSARVPEDGTRAHR 418
LPNS SS L H +AG Q PS S + QT R ++ + + T R
Sbjct: 172 LPNSTSASSSLNHVSDLEAGPSSYEWTQQQPSDS-DLYQTNKRKRQKQSSDSDSSTENSR 230
Query: 419 NNAYTNMSMGLASKR 433
N Y+ KR
Sbjct: 231 GNEYSPKFQKCKKKR 245
Score = 38 (18.4 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 404 ERSARVPEDGTRAHRNNAYTNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGTSFS 461
E +A +P + + N +++ G +S T P DS + + K + S S S
Sbjct: 167 EMTAPLPNSTSASSSLNHVSDLEAGPSSYEWTQQQPSDSDLYQTNKRKRQKQSSDSDS 224
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 287 PTLHPQIQLP 296
PT +P +QLP
Sbjct: 155 PTYYPALQLP 164
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 151 (58.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R +FVGN+ +D TE+ L E R G +V R+ ++TGK KG+ F ++KDEE A +A +
Sbjct: 215 RILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDEEGATTALK 274
Query: 67 NLQGYEINGRQLRVDFAEN 85
+ + R+LR+++ E+
Sbjct: 275 SKLTKMLINRKLRMEYGED 293
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 151 (58.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R +FVGN+ +D TE+ L E R G +V R+ ++TGK KG+ F ++KDEE A +A +
Sbjct: 215 RILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDEEGATTALK 274
Query: 67 NLQGYEINGRQLRVDFAEN 85
+ + R+LR+++ E+
Sbjct: 275 SKLTKMLINRKLRMEYGED 293
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 141 (54.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A R +FVGN+ TEE L E+ + GPVV ++ D++ GKPK + F +K E +
Sbjct: 5 AEEADRTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRN 92
A L G ++ GR +++ F A ++
Sbjct: 64 PYAMNLLNGIKLFGRPIKIQFRSGSSHASQD 94
Score = 44 (20.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 297 QNAKNQALQQASLPGQSGIPML-PS-MHPSVRPQIQLANSSSLNQ 339
Q N L+Q S G+ G P L PS PS ++SS Q
Sbjct: 144 QAVMNSVLRQMSYGGKFGSPHLDPSGFSPSHSHSFNQSSSSQWRQ 188
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 35/106 (33%), Positives = 54/106 (50%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M+S R ++VGN+P D E ++ ++ + GPVV L I +P GY F E++D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARD 57
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNRE-----QGRGGPG 101
A A GY+ +G LRV+ A + + + +GRGG G
Sbjct: 58 ADDAIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRG 103
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 31/101 (30%), Positives = 48/101 (47%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG +P+ +E LI + G ++ +V DRET + +GYGF +KD E+A A ++
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD- 73
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQ 109
I GR A N+ Q P + DPQ
Sbjct: 74 PNPTIEGRITNCKLAFVGAKVKPNQSQPSNLPQLLPRYDPQ 114
>UNIPROTKB|G4N5M5 [details] [associations]
symbol:MGG_05264 "Translation initiation factor 4B"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CM001233 Gene3D:3.30.70.330 GO:GO:0003743
KO:K03258 RefSeq:XP_003712822.1 EnsemblFungi:MGG_05264T0
GeneID:2675531 KEGG:mgr:MGG_05264 Uniprot:G4N5M5
Length = 563
Score = 150 (57.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 39/114 (34%), Positives = 55/114 (48%)
Query: 11 VGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG 70
+GN+ YDAT E + + VVS R+V DRE +PKG+G+ E+ E L N G
Sbjct: 86 LGNLSYDATNETVTDFFAAC-EVVSVRIVEDREQQRPKGFGYAEFATAE-GLQKALNFDG 143
Query: 71 YEINGRQLRVDFAE---NDKGADRNREQGRGGPGMAAIVD-PQKQLGGPAIHGE 120
GR +R+ A+ N +G RE P + D P+ GP+ GE
Sbjct: 144 DSFQGRVIRIRIADPPKNSEGRSEARELDWSQPRKGPLADMPRNDRRGPSEFGE 197
Score = 47 (21.6 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 376 PHPPSSDAG--FQPGPSTSAGIGQTVSRD 402
P PP ++ G QPG +AG T D
Sbjct: 518 PRPPRANGGQQSQPGTPVTAGPDSTPDED 546
Score = 47 (21.6 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 17/80 (21%), Positives = 37/80 (46%)
Query: 452 TEDGSGTSFSVGALNVSKPIGSAPSQAFGAGLVPVNQVPKVEEVQYSEKQIPQISPDVES 511
+ +GS F G + + S+P+ +G G ++ P+ E ++++ P+ +P
Sbjct: 247 SREGSRPPFEGGDSSNREDRRSSPA-TWGEGRQDGSRPPRRE---FADRPAPERAPTAAE 302
Query: 512 ALLQQVLSLTPEQLNSLPPE 531
+Q S+ P+Q P +
Sbjct: 303 KDMQWRSSMRPDQPTKSPAQ 322
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 150 (57.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 42/130 (32%), Positives = 66/130 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+GN+ ++A + + E+ + G VVS R+ ET +PKG+G+ ++ + E A A L
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 69 QGYEINGRQLRVDFAE----ND--KGADRN---REQGRGGP-GMAAIVDPQKQLGGPAIH 118
QG I+ R +R+DF+ ND +G R R GRGG G + GG
Sbjct: 329 QGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRGGNRGFGGRGGARGGRGGFRPS 388
Query: 119 GESVHHQPIG 128
G + P+G
Sbjct: 389 GSGANTAPLG 398
Score = 129 (50.5 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/90 (26%), Positives = 51/90 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG + + +E L + +G V+ R++ +R T + +GYG+ +++++ A A + +
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRG 98
QG EI+GR + D + + + +R + G
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFG 259
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 147 (56.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M+S R V+VGN+P D E ++ ++ + GPVV L + +P GY F E+ D
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARD 57
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDK-GADRNREQGRGG 99
A A GY+ +G +LRV+ A + +D R GG
Sbjct: 58 AEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGG 97
>UNIPROTKB|E2RM13 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:AAEX03017702
EMBL:AAEX03017703 Ensembl:ENSCAFT00000015804 Uniprot:E2RM13
Length = 404
Score = 111 (44.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 20/72 (27%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+++ +P + T++ L+++C+ G +VS + ++D+ T K KGYGF ++ D A A++ +
Sbjct: 62 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF-DSPAA--AQKAV 118
Query: 69 QGYEINGRQLRV 80
+ +G Q ++
Sbjct: 119 SALKASGVQAQM 130
Score = 84 (34.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 58/250 (23%), Positives = 108/250 (43%)
Query: 155 NGIQSQLASPN--DPLTLHLAK----MSRNQLNEIMSEM-KLMATQN-KEQARQXXXXXX 206
+G+Q+Q+A DP L+++ M +L ++ ++++T+ ++ +
Sbjct: 124 SGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF 183
Query: 207 XXXXXXFQAQIMLGMATPQVLQMPILRQGPGHPAQPL---FQDGQQQVAQLPG-LPPLAQ 262
+ + ++G + ++ P G P +PL F DG Q+ Q P P +
Sbjct: 184 ARMESTEKCEAVIGHFNGKFIKTP---PGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGR 240
Query: 263 KMQLMPKVQEAQIQL-HNQFSAATQPTLHPQIQLPQN-AKNQALQQASLPGQSGIPML-- 318
+V+ A + L ++ +AA Q +P P + A N+ + Q SL P+
Sbjct: 241 PWHREGEVRLAGMTLTYDPTTAAIQNGFYPS---PYSIATNRMITQTSLTPYIASPVSAY 297
Query: 319 ----PS-MHPSV----RPQIQLANSSSLNQQVHPPSLENQV--QVSASNLGQNTWTKLP- 366
PS M P P L S + P S+ + + Q+S +LG +T T +P
Sbjct: 298 QVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLG-STGTYMPA 356
Query: 367 NSAMRSSFLP 376
SAM+ ++LP
Sbjct: 357 TSAMQGAYLP 366
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 141 (54.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A+ R +FVGN+ TEE L E+ + GPV+ ++ D++ GKPK + F +K E +
Sbjct: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRN 92
A L G ++ GR +++ F A ++
Sbjct: 64 PYAMNLLNGIKLYGRPIKIQFRSGSSHAPQD 94
Score = 43 (20.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 21/99 (21%), Positives = 43/99 (43%)
Query: 406 SARVPEDGTRAHRNNAYTNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGAL 465
S+ P+D + ++ + N S S S +D+++ ++I++ S +F A+
Sbjct: 88 SSHAPQDVSLSYPQHHVGNSSPTSTSPSSRYERTMDNMTSSAQIIQRSFSSPENFQRQAV 147
Query: 466 NVSKPIGSAPSQAFGAGLVPVNQV---PKVEEVQYSEKQ 501
S + FG+ P++Q P V+ +S Q
Sbjct: 148 MNSALRQMSYGGKFGSS--PLDQSGFSPSVQSHSHSFNQ 184
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 140 (54.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
+Q +++GN+ T+ L E+C + GPVV+ + DR G+GFCE+ E+
Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67
Query: 64 ARRNLQGYEINGRQLRVDFAENDKGAD 90
A + L ++ G+ +RV+ A D+G +
Sbjct: 68 ACQILNQVKLFGKPIRVNRASQDRGVN 94
Score = 49 (22.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/90 (28%), Positives = 35/90 (38%)
Query: 221 MATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQ 280
++ P VL + PG PA P+ V PG PL +P +
Sbjct: 254 LSIPNVLPFTAAQHFPGMPAMPMMN-----VPMGPGGAPL------VPPPPPGMVMASPS 302
Query: 281 FSAATQP--TLHPQIQLPQ--NAKNQALQQ 306
+AAT P + P I Q NA+N QQ
Sbjct: 303 PAAATIPGAPVMPNIPFYQTINAQNGYSQQ 332
Score = 39 (18.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 266 LMPKVQEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQ 302
L P V E L++ FSA Q PQ+ +N +++
Sbjct: 106 LDPLVDERV--LYDTFSALGQLVKAPQVARDENGRSK 140
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 141 (54.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A+ R +FVGN+ TEE L E+ + GPV+ ++ D++ GKPK + F +K E +
Sbjct: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRN 92
A L G ++ GR +++ F A ++
Sbjct: 64 PYAMNLLNGIKLYGRPIKIQFRSGSSHAPQD 94
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 147 (56.8 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
AS + ++VGN+PY T +L +I E G VV ++V D+ T + +G+GF E A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVD-PQKQLGG 114
A + +I GR ++V+F E +G + + + + VD P K G
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAG 224
Score = 127 (49.8 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 26/85 (30%), Positives = 49/85 (57%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
S H+ V+ GN+ ++ T + L + + V+ +++ +R TG+ +G+GF ++ E S
Sbjct: 217 SPHK-VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 64 ARRNLQGYEINGRQLRVDFA-ENDK 87
A + G E+ GR LR++ A E +K
Sbjct: 276 ALATMNGVEVEGRALRLNLASEREK 300
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 148 (57.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 95 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 154
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 155 NGFELAGRPMKV 166
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 127 (49.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G + + T++ L E G + +V DR+T + +G+GF + E A +A +
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGG 99
E +GR +RVD A A QGRGG
Sbjct: 64 NNQEFDGRIIRVDKASERPAARNGGFQGRGG 94
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 127 (49.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +FVG + +++ ++ L + P+ +V DRET + +G+GF + + E A
Sbjct: 2 SSEEGKLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFA-ENDKGADRNREQGRG 98
+ R + G ++GRQ+ VD A ++ +G R RG
Sbjct: 62 NVMRAMNGESLDGRQIHVDHAGKSAQGTRRGAFGARG 98
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 127 (49.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+ Y + L G V S ++V+DR TG+ +G+GF E ++ A +A L
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGG 99
G E++GR L V+ A + +R G GG
Sbjct: 65 NGKEMDGRNLMVNEA---RPPERRGGSGGGG 92
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 145 (56.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+P+D +L + E G VV R+V DRETG+ +G+GF + +E A L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 69 QGYEINGRQLRVDFAE 84
G + GR ++V+ AE
Sbjct: 269 DGQNLEGRAIKVNVAE 284
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVGN+PYD + L + + G V ++ +R+T + +G+GF E A A
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 69 QGYEINGRQLRVDFAENDKGADRNRE 94
+E+NGR+L V+ A +G+ R+
Sbjct: 175 NSFEVNGRRLTVNRAA-PRGSRPERQ 199
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 148 (57.2 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>UNIPROTKB|C1BY64 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
Uniprot:C1BY64
Length = 155
Score = 126 (49.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 38/117 (32%), Positives = 57/117 (48%)
Query: 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFC--EYKDEETAL 62
Q ++VGN+ + TEEQ+ E+ + G V R++I + K GFC EY A
Sbjct: 37 QSNTLYVGNLSFYTTEEQVYELFSKSGDVK--RIIIGLDKVKKTACGFCFVEYYTRADAE 94
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHG 119
+A R + G ++ R +R D+ D G R+ GRG G + D +Q PA G
Sbjct: 95 NAMRFVNGTRLDDRIIRTDW---DAGFKEGRQYGRGKSG-GQVRDEYRQDYDPARGG 147
>SGD|S000000147 [details] [associations]
symbol:PIN4 "Protein involved in G2/M phase progression and
response to DNA damage" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0000077 "DNA
damage checkpoint" evidence=IGI;IPI] [GO:0000086 "G2/M transition
of mitotic cell cycle" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SGD:S000000147 GO:GO:0005737
GO:GO:0000077 GO:GO:0000086 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006936 GO:GO:0003723 eggNOG:COG0724 OrthoDB:EOG4QG0PB
EMBL:Z23261 EMBL:Z35812 PIR:S39836 RefSeq:NP_009502.1 PDB:2A0T
PDBsum:2A0T ProteinModelPortal:P34217 SMR:P34217 DIP:DIP-1905N
IntAct:P34217 MINT:MINT-388641 STRING:P34217 PaxDb:P34217
PeptideAtlas:P34217 EnsemblFungi:YBL051C GeneID:852229
KEGG:sce:YBL051C CYGD:YBL051c HOGENOM:HOG000115549 OMA:KKMLPQA
EvolutionaryTrace:P34217 NextBio:970760 Genevestigator:P34217
GermOnline:YBL051C Uniprot:P34217
Length = 668
Score = 101 (40.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+ + NIP+ +EQL++I E+ + + + G +G F + E +L
Sbjct: 87 IVIKNIPFAIKKEQLLDIIEEMDLPLPYAFNYHFDNGIFRGLAFANFTTPEETTQVITSL 146
Query: 69 QGYEINGRQLRVDFAENDKGADRNR 93
G EI+GR+L+V++ + A+R R
Sbjct: 147 NGKEISGRKLKVEYKKMLPQAERER 171
Score = 98 (39.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 29/103 (28%), Positives = 51/103 (49%)
Query: 263 KMQLMPKVQEAQIQLHN--QFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGI--PM- 317
+ + P + ++ +H+ Q+++A QP PQ Q QN ++ A QQ S Q P
Sbjct: 457 QFSMQPTLTSPKMNIHHSSQYNSADQPQ-QPQPQTQQNVQSAAQQQQSFLRQQATLTPSS 515
Query: 318 -LPSMHPSVRPQIQLANSSSLNQQVHPPSLENQVQVSASNLGQ 359
+PS + + QI N N Q+ PP+ +Q+ +++ L Q
Sbjct: 516 RIPSGYSANHYQINSVNPLLRNSQISPPN--SQIPINSQTLSQ 556
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 154 (59.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
VF+G +P D EE L ++C E+G + RL+ DR++G KGY F +K ++ A A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 69 QGYEINGRQLRVDFAE 84
E G+ +R +E
Sbjct: 178 HSKEFKGKTIRCSLSE 193
Score = 38 (18.4 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 273 AQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLP 319
+Q ++ + + T + P + LP LQQ +P + P P
Sbjct: 417 SQPMIYGRGAMPTGMQMVPML-LPDGRVGYVLQQPGMPMAAAPPQRP 462
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 147 (56.8 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+GN+ ++A + L + E G V+S R+ +T +PKG+G+ ++ + A +A +
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 69 QGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
G I GR R+DF+ D + N RGG G
Sbjct: 332 NGEYIEGRPCRLDFSTPRDNTNNNNNNNRRGGFG 365
Score = 134 (52.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/90 (27%), Positives = 51/90 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG + ++ + L +G V+ R++++R TGK +GYG+ +++ + A A +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 69 QGYEINGRQLRVDFAENDKGADR-NREQGR 97
QG EI+GR + +D + A + N ++ +
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAK 259
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 147 (56.8 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+GN+ ++A + L + E G V+S R+ +T +PKG+G+ ++ + A +A +
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 69 QGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
G I GR R+DF+ D + N RGG G
Sbjct: 332 NGEYIEGRPCRLDFSTPRDNTNNNNNNNRRGGFG 365
Score = 134 (52.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/90 (27%), Positives = 51/90 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG + ++ + L +G V+ R++++R TGK +GYG+ +++ + A A +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 69 QGYEINGRQLRVDFAENDKGADR-NREQGR 97
QG EI+GR + +D + A + N ++ +
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAK 259
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 117 (46.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L E+ + G +S +++ D TGK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G +ING+ + V A+ K +R E R
Sbjct: 252 NGKDINGKMVFVGRAQ--KKVERQAELKR 278
Score = 94 (38.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ D TE L E GPV+S R+ D T + GY + ++ A A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 QGYEINGRQLRVDFAEND 86
I G+ +R+ +++ D
Sbjct: 73 NFDVIKGKPIRIMWSQRD 90
Score = 80 (33.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 284 ATQPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLANS 334
A QP +H Q Q P A A +Q + G+ P++ +MHPS+ +I ++ NS
Sbjct: 528 APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNS 587
Query: 335 SSLNQQVHPPSLENQVQVSASNL 357
L+ P SL ++V+ + + L
Sbjct: 588 ELLHMLESPESLRSKVEEAVAVL 610
Score = 47 (21.6 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 283 AATQPTLHPQIQLPQNAKNQALQQASLP-GQSGIPMLPSMHPS-VRPQIQ-LANSSSLNQ 339
A ++PT + Q+ Q N QQ P G G+P +M S RP ++ LA + +
Sbjct: 416 AQSRPTYYAPNQMAQMRPNPRWQQGGRPQGFQGMPN--AMRQSGPRPALRHLAPAGTAPA 473
Query: 340 QVHPPSLENQVQVSASNLGQNTWTKLPNSAMRSSFLP 376
P +V V+ + GQ+ + P +A +P
Sbjct: 474 SRGLPVSAQRVGVTTA--GQSLAPRPPVAAPAPRAVP 508
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 147 (56.8 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 37/97 (38%), Positives = 53/97 (54%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV I YD TE +L GP+ +V +++TGKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVDFAEND--KGADRNREQGRGGPG 101
+ G +I+GR++ VD KG R R G GG G
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKGW-RPRRLG-GGLG 197
Score = 45 (20.9 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 384 GFQPGPSTSAGI-GQTVSRDAERSARVPEDGTRAHRN 419
G +PG G G+ RD ++ D R+HR+
Sbjct: 358 GGEPGRGEEGGPEGEERGRDRDKDRERDRDRKRSHRD 394
Score = 37 (18.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 376 PHPPSSDAGFQPG 388
P PP S+ G Q G
Sbjct: 450 PVPPQSEEGSQDG 462
>WB|WBGene00016245 [details] [associations]
symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
Length = 302
Score = 144 (55.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+++G + Y +E +I + + G V++ L+ D++TGK KG+ F YKD+ + + A N
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 69 QGYEINGRQLRVDFAENDK 87
G ++ R +RVD E K
Sbjct: 100 NGISLHKRMIRVDHVEEYK 118
>UNIPROTKB|D6RFL5 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00968211
ProteinModelPortal:D6RFL5 SMR:D6RFL5 Ensembl:ENST00000514782
ArrayExpress:D6RFL5 Bgee:D6RFL5 Uniprot:D6RFL5
Length = 137
Score = 125 (49.1 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 5 QHRC-VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
Q C VFVG IP D E++L+ + VG + RL++D + GK +GY F Y + A
Sbjct: 68 QRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKR 126
Query: 64 ARRNLQGYEI 73
A R L YEI
Sbjct: 127 AVRELNNYEI 136
>UNIPROTKB|C0H859 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8030 "Salmo salar" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT043732 EMBL:BT058515 EMBL:BT060223
UniGene:Ssa.8109 ProteinModelPortal:C0H859 Uniprot:C0H859
Length = 155
Score = 125 (49.1 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 38/117 (32%), Positives = 57/117 (48%)
Query: 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFC--EYKDEETAL 62
Q ++VGN+ + TEEQ+ E+ + G V R++I + K GFC EY A
Sbjct: 37 QANTLYVGNLSFYTTEEQVYELFSKSGDVK--RIIIGLDKVKKTACGFCFVEYYTRTDAE 94
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHG 119
+A R + G ++ R +R D+ D G R+ GRG G + D +Q PA G
Sbjct: 95 NAMRFVNGTRLDDRIIRTDW---DAGFKEGRQYGRGKSG-GQVRDEYRQDYDPARGG 147
>TAIR|locus:2206001 [details] [associations]
symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
Genevestigator:Q8L716 Uniprot:Q8L716
Length = 589
Score = 149 (57.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY TE Q+ E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 69 QGYEINGRQLRV 80
G ++ + L V
Sbjct: 437 NGIKMGDKTLTV 448
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 150 (57.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 38/100 (38%), Positives = 57/100 (57%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E G V + R+V DRETG KG+GF ++ EE A
Sbjct: 565 SQPSKTLFVKGLSEDTTEETLKESFE--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAK 621
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 622 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 661
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 120 (47.3 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 32/110 (29%), Positives = 51/110 (46%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ T+ QL E + G VVS R+ D T + GYG+ Y + A A L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIH 118
+NGR +RV ++ D ++ G G I + K + A+H
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKS------GVGNIFIKNLDKSIDHKALH 150
Score = 108 (43.1 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+ N+ + L E GP++S ++ +D +G+ KGYGF +Y +E A A L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 69 QGYEINGRQLRV 80
G +N +Q+ V
Sbjct: 194 NGMLLNDKQVYV 205
Score = 77 (32.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 28/103 (27%), Positives = 48/103 (46%)
Query: 222 ATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQF 281
A PQ Q + Q HP +++ Q+ V +PG P Q M +P + +H++
Sbjct: 509 ALPQPQQPSPMMQQQMHPRGRMYRYPQRDVNTMPG-P--TQNMLSVPYDVSSGGGVHHRD 565
Query: 282 SAATQPTLHPQIQLPQNAKNQAL-QQASLPGQSGIPMLPSMHP 323
S +QP P + L N A QQ ++ G++ P++ + P
Sbjct: 566 SPTSQPV--PIVALATRLANAAPEQQRTMLGENLYPLVEQLEP 606
Score = 70 (29.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 29/95 (30%), Positives = 40/95 (42%)
Query: 236 PGHP--AQPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQPTLHPQI 293
PG P Q LF GQ A +P P + QL+P ++ + N F Q Q
Sbjct: 437 PGGPPMGQQLFY-GQGPPAMIPQ-PGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQ 494
Query: 294 QLPQNAKNQALQQASLPG-QSGIPMLPS-MHPSVR 326
Q Q + ++ +LP Q PM+ MHP R
Sbjct: 495 QQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGR 529
Score = 45 (20.9 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 21/78 (26%), Positives = 31/78 (39%)
Query: 220 GMATPQVLQMPILRQGPGHPA----QPLFQDGQQQVAQLPGLP-PLAQKMQLMPKVQEAQ 274
G Q L +P +R G G P P+ Q GQQQ Q P + +P+ Q+
Sbjct: 460 GFGYQQQL-VPGMRPG-GSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPS 517
Query: 275 IQLHNQFSAATQPTLHPQ 292
+ Q + +PQ
Sbjct: 518 PMMQQQMHPRGRMYRYPQ 535
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 150 (57.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 38/100 (38%), Positives = 57/100 (57%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E G V + R+V DRETG KG+GF ++ EE A
Sbjct: 571 SQPSKTLFVKGLSEDTTEETLKESFE--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAK 627
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 628 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 667
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 150 (57.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 38/100 (38%), Positives = 57/100 (57%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E G V + R+V DRETG KG+GF ++ EE A
Sbjct: 568 SQPSKTLFVKGLSEDTTEETLKESFE--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAK 624
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 625 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 664
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 150 (57.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 38/100 (38%), Positives = 57/100 (57%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E G V + R+V DRETG KG+GF ++ EE A
Sbjct: 572 SQPSKTLFVKGLSEDTTEETLKESFE--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAK 628
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 629 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 668
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 138 (53.6 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + + L+ D +TG+ KGYGF + D E A A L
Sbjct: 40 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 99
Query: 69 QGYEINGRQLRVDFAEN--DKGAD 90
G+E+ GR +RV D G D
Sbjct: 100 NGFELAGRPMRVGHVTERLDGGTD 123
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 148 (57.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 148 (57.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 148 (57.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 148 (57.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 148 (57.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 148 (57.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 148 (57.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 148 (57.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 149 (57.5 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A +H+ +FV +P+ T+E+L EIC+ G V RLV +R GKPKG + EY++E A
Sbjct: 495 ALEKHK-LFVSGLPFSCTKEELEEICKAHGTVKDIRLVTNR-AGKPKGLAYVEYENESQA 552
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLG 113
A + G I ++V + + + + R PG A + P++ G
Sbjct: 553 SQAVLKMDGMTIRENVIKVAISNPPQRKVPEKPEARKAPGSALL--PRQVYG 602
>UNIPROTKB|P29558 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=NAS] [GO:0006260 "DNA
replication" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0003697
"single-stranded DNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
EMBL:AC092153 CTD:5937 eggNOG:NOG320163 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 EMBL:D28482 EMBL:X77494 EMBL:AC104598
EMBL:AC131754 EMBL:BC012992 EMBL:BC012993 EMBL:BC018951 EMBL:X64652
IPI:IPI00033611 IPI:IPI00929296 IPI:IPI00941661 PIR:I38042
PIR:S19873 PIR:S47659 PIR:S53612 RefSeq:NP_002888.1
RefSeq:NP_058520.1 UniGene:Hs.470412 PDB:1X5O PDBsum:1X5O
ProteinModelPortal:P29558 SMR:P29558 STRING:P29558
PhosphoSite:P29558 DMDM:55977783 PaxDb:P29558 PRIDE:P29558
DNASU:5937 Ensembl:ENST00000348849 GeneID:5937 KEGG:hsa:5937
UCSC:uc002ubn.3 UCSC:uc002ubo.3 GeneCards:GC02M161128
HGNC:HGNC:9907 HPA:HPA047943 MIM:602310 neXtProt:NX_P29558
PharmGKB:PA34273 InParanoid:P29558 PhylomeDB:P29558 ChiTaRS:RBMS1
EvolutionaryTrace:P29558 GenomeRNAi:5937 NextBio:23144
ArrayExpress:P29558 Bgee:P29558 CleanEx:HS_RBMS1
Genevestigator:P29558 GermOnline:ENSG00000153250 Uniprot:P29558
Length = 406
Score = 109 (43.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 20/72 (27%), Positives = 44/72 (61%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+++ +P T++ L+++C+ G +VS + ++D+ T K KGYGF ++ D A A++ +
Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF-DSPAA--AQKAV 120
Query: 69 QGYEINGRQLRV 80
+ +G Q ++
Sbjct: 121 SALKASGVQAQM 132
Score = 82 (33.9 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 57/250 (22%), Positives = 108/250 (43%)
Query: 155 NGIQSQLASPN--DPLTLHLAK----MSRNQLNEIMSEM-KLMATQN-KEQARQXXXXXX 206
+G+Q+Q+A DP L+++ M +L ++ ++++T+ ++ +
Sbjct: 126 SGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF 185
Query: 207 XXXXXXFQAQIMLGMATPQVLQMPILRQGPGHPAQPL---FQDGQQQVAQLPG-LPPLAQ 262
+ + ++G + ++ P G P +PL F DG Q+ Q P P +
Sbjct: 186 ARMESTEKCEAVIGHFNGKFIKTP---PGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGR 242
Query: 263 KMQLMPKVQEAQIQL-HNQFSAATQPTLHPQIQLPQN-AKNQALQQASLPGQSGIPML-- 318
+V+ A + L ++ +AA Q +P P + A N+ + Q S+ P+
Sbjct: 243 PWHREGEVRLAGMTLTYDPTTAAIQNGFYPS---PYSIATNRMITQTSITPYIASPVSAY 299
Query: 319 ----PS-MHPSV----RPQIQLANSSSLNQQVHPPSLENQV--QVSASNLGQNTWTKLP- 366
PS M P P L S + P S+ + + Q+S +LG +T T +P
Sbjct: 300 QVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLG-STGTYMPA 358
Query: 367 NSAMRSSFLP 376
SAM+ ++LP
Sbjct: 359 TSAMQGAYLP 368
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 112 (44.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +++L +I + G +S R++ D E GK +G+GF ++ E A A +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G E+NG+ + V A+ K +R E R
Sbjct: 252 NGKEMNGKLIYVGRAQ--KKVERQTELKR 278
Score = 89 (36.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ D TE L E G ++S R+ D T + GY + ++ A A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 QGYEINGRQLRVDFAEND 86
I GR +R+ +++ D
Sbjct: 73 NFDVIKGRPVRIMWSQRD 90
Score = 89 (36.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+ N+ + L + G ++S ++V D E G KGYGF ++ +E A A +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAIEKM 158
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQG 96
G +N R++ V ++ K +R E G
Sbjct: 159 NGMLLNDRKVFVGRFKSRK--EREAELG 184
Score = 84 (34.6 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 258 PPL--AQKMQLMPKVQEAQIQLHNQFSAATQ-PTLHPQIQLPQNAKNQAL----QQASLP 310
PP+ + + P V+ Q ++ Q Q P +H Q Q P A A +Q +
Sbjct: 501 PPVRGVPQYKYAPSVRNPQQHMNTQPQVTMQQPAVHVQGQEPLTASMLAAAPPQEQKQML 560
Query: 311 GQSGIPMLPSMHPSVRPQI-----QLANSSSLNQQVHPPSLENQVQVSASNL 357
G+ P++ +MHPS+ +I ++ NS L+ P SL ++V + + L
Sbjct: 561 GERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 612
Score = 56 (24.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 36/134 (26%), Positives = 56/134 (41%)
Query: 228 QMPILRQGPGHPAQPLFQDGQQQVAQLPG-LPPLAQKMQLMPKVQEA-QI-QLHNQFSAA 284
Q+ LR P Q + Q +PG + P A + Q ++ A Q+ ++ + A
Sbjct: 427 QLAQLRPSPRWTTQGV---RPQHFQNMPGTMRPSAPRPQTFSTMRPASQVPRMMSTQRVA 483
Query: 285 TQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSVR-PQIQLANSSSLNQQVHP 343
TQ T+ P+ P A AS P G+P PSVR PQ + + Q
Sbjct: 484 TQ-TMGPR---PSTAA----AAASAPPVRGVPQY-KYAPSVRNPQQHMNTQPQVTMQQPA 534
Query: 344 PSLENQVQVSASNL 357
++ Q ++AS L
Sbjct: 535 VHVQGQEPLTASML 548
Score = 56 (24.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 33/144 (22%), Positives = 52/144 (36%)
Query: 216 QIMLGMATPQVLQMPILRQGPGHPAQP--LFQDGQQQVAQLPGLPPLAQKMQLMPKVQEA 273
Q M MA+ + + P++ P PA P F Q P +Q QL P +
Sbjct: 381 QYMQRMASVRAVPNPVIN--PYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWT 438
Query: 274 QIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQAS-LPGQSGIPMLPSMHPSVRPQIQLA 332
+ Q T+ P PQ ++ AS +P + + RP A
Sbjct: 439 TQGVRPQHFQNMPGTMRPSAPRPQTFST--MRPASQVPRMMSTQRVATQTMGPRPSTAAA 496
Query: 333 NSSS-----LNQQVHPPSLENQVQ 351
+S+ + Q + PS+ N Q
Sbjct: 497 AASAPPVRGVPQYKYAPSVRNPQQ 520
>UNIPROTKB|F1NYA2 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 EMBL:AADN02026007 IPI:IPI00581340
ProteinModelPortal:F1NYA2 Ensembl:ENSGALT00000001999 Uniprot:F1NYA2
Length = 146
Score = 124 (48.7 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 35/94 (37%), Positives = 51/94 (54%)
Query: 10 FVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ 69
+VGN+P++ + + I +++ V S RLV D+ET K KG+ + E+ DE +L
Sbjct: 43 YVGNLPFNTVQGDIDAIFKDLS-VRSVRLVRDKETDKFKGFCYVEF-DEVESLKEALTYD 100
Query: 70 GYEINGRQLRVDFAEN---DKGADRNREQGRGGP 100
G + R LRVD AE DKG R +GGP
Sbjct: 101 GALLGDRSLRVDIAEGRKQDKGGFGFR---KGGP 131
>UNIPROTKB|A2SW84 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:119488 "Siniperca chuatsi" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847
GO:GO:0046833 GO:GO:0006408 EMBL:DQ359156 ProteinModelPortal:A2SW84
SMR:A2SW84 Uniprot:A2SW84
Length = 165
Score = 124 (48.7 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 38/117 (32%), Positives = 57/117 (48%)
Query: 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFC--EYKDEETAL 62
Q ++VGN+ + TEEQ+ E+ + G V R++I + K GFC EY A
Sbjct: 37 QSHTLYVGNLSFYTTEEQVHELFSKSGDVK--RIIIGLDKVKKTACGFCFVEYYTRAGAE 94
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHG 119
+A R + G ++ R +R D+ D G R+ GRG G + D +Q PA G
Sbjct: 95 NAMRFINGTRLDDRIIRADW---DAGFKEGRQYGRGKSG-GQVRDEYRQDYDPARGG 147
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 124 (48.7 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 37/125 (29%), Positives = 59/125 (47%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+ + TEEQ+ E+ + G V + +D+ P G+ F EY A A R +
Sbjct: 45 LYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRFI 104
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQK---QLG----GPAIHGES 121
G ++ R +R D+ D G R+ GRG G + D + +G G I +
Sbjct: 105 NGTRLDDRIIRTDW---DAGFKEGRQYGRGKTG-GQVRDEYRTDYDVGRGGFGKIIQMQK 160
Query: 122 VHHQP 126
+HQP
Sbjct: 161 ANHQP 165
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 149 (57.5 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 37/100 (37%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E V R+V DRETG KG+GF ++ EE A
Sbjct: 568 SQPSKTLFVKGLSEDTTEETLKE---SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAK 624
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 625 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 664
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 149 (57.5 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 37/100 (37%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E V R+V DRETG KG+GF ++ EE A
Sbjct: 569 SQPSKTLFVKGLSEDTTEETLKE---SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAK 625
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 626 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 665
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 149 (57.5 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 37/100 (37%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E V R+V DRETG KG+GF ++ EE A
Sbjct: 570 SQPSKTLFVKGLSEDTTEETLKE---SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAK 626
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 627 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 666
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 149 (57.5 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 37/100 (37%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E V R+V DRETG KG+GF ++ EE A
Sbjct: 573 SQPSKTLFVKGLSEDTTEETLKE---SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAK 629
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 630 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 669
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 141 (54.7 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A+ R +FVGN+ TEE L E+ + GPV+ ++ D++ GKPK + F +K E +
Sbjct: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRN 92
A L G ++ GR +++ F A ++
Sbjct: 64 PYAMNLLNGIKLYGRPIKIQFRSGSSHAPQD 94
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 148 (57.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E + R+V DRETG KG+GF ++ EE A
Sbjct: 483 SQPSKTLFVKGLSEDTTEETLKE---SFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAK 539
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 540 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 579
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 148 (57.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E + R+V DRETG KG+GF ++ EE A
Sbjct: 488 SQPSKTLFVKGLSEDTTEETLKE---SFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAK 544
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 545 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 584
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 148 (57.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E + R+V DRETG KG+GF ++ EE A
Sbjct: 488 SQPSKTLFVKGLSEDTTEETLKE---SFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAK 544
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 545 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 584
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 144 (55.7 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 35/100 (35%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + + TEE L E + R+V DRETG KG+GF ++ EE A
Sbjct: 222 SQPSKTLFVKGLSEETTEETLKE---SFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAK 278
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 279 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 318
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 123 (48.4 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 33/100 (33%), Positives = 51/100 (51%)
Query: 3 SSQHRC-VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
S + C ++VGN+ + TEEQ+ E+ G V + +D+ P G+ F EY A
Sbjct: 25 SLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEA 84
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
+A R + G ++ R +RVD+ D G R+ GRG G
Sbjct: 85 EAAMRFVNGTRLDDRLIRVDW---DAGFVEGRQYGRGKTG 121
>UNIPROTKB|Q6DES0 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
Length = 153
Score = 123 (48.4 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 33/108 (30%), Positives = 53/108 (49%)
Query: 5 QHRC-VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
+H C ++VGN+ + TEEQ+ E+ + G V + +D+ G+ F EY A
Sbjct: 34 KHSCTLYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQ 93
Query: 64 ARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQ 111
A R + G ++ R +R D+ D G R+ GRG G + D +Q
Sbjct: 94 AMRFINGTRLDDRIIRTDW---DAGFKEGRQYGRGKSG-GQVRDEYRQ 137
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 123 (48.4 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG + E L E G +V +V+DRE+G +G+GF Y E A +A + +
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPG 101
Q E++GR + V A++ G RGG G
Sbjct: 98 QNKELDGRIIGVHPADSGGGGGGGGFARRGGYG 130
>ZFIN|ZDB-GENE-020419-31 [details] [associations]
symbol:ncbp2 "nuclear cap binding protein subunit 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
Length = 155
Score = 123 (48.4 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 38/117 (32%), Positives = 57/117 (48%)
Query: 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFC--EYKDEETAL 62
Q ++VGN+ + TEEQ+ E+ + G V R++I + K GFC EY A
Sbjct: 37 QSATLYVGNLSFYTTEEQVHELFAKCGDVK--RIIIGLDKIKKTACGFCFVEYYTRADAE 94
Query: 63 SARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHG 119
+A R + G ++ R +R D+ D G R+ GRG G + D +Q PA G
Sbjct: 95 NAMRFVNGTRLDDRIIRTDW---DAGFKEGRQYGRGKSG-GQVRDEYRQDYDPARGG 147
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 148 (57.2 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
S + +FV + D TEE L E + R+V DRETG KG+GF ++ EE A
Sbjct: 578 SQPSKTLFVKGLSEDTTEETLKE---SFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAK 634
Query: 63 SARRNLQGYEINGRQLRVDFAE-NDKGADRNREQGRGGPG 101
+A+ ++ EI+G ++ +D+A+ +G R GRGG G
Sbjct: 635 AAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFG 674
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 146 (56.5 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 248 LYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQL 307
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 308 NGFELAGRPMKV 319
>UNIPROTKB|F1RPR6 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:CU914319 Ensembl:ENSSSCT00000017300 Uniprot:F1RPR6
Length = 375
Score = 111 (44.1 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 20/72 (27%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+++ +P + T++ L+++C+ G +VS + ++D+ T K KGYGF ++ D A A++ +
Sbjct: 31 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF-DSPAA--AQKAV 87
Query: 69 QGYEINGRQLRV 80
+ +G Q ++
Sbjct: 88 SALKASGVQAQM 99
Score = 77 (32.2 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 57/252 (22%), Positives = 107/252 (42%)
Query: 155 NGIQSQLASPN--DPLTLHLAK----MSRNQLNEIMSEM-KLMATQ---NKEQARQXXXX 204
+G+Q+Q+A DP L+++ M +L ++ ++++T+ + +
Sbjct: 93 SGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF 152
Query: 205 XXXXXXXXFQAQIMLGMATPQVLQMPILRQGPGHPAQPL---FQDGQQQVAQLPG-LPPL 260
+ + ++G + ++ P G P +PL F DG Q+ Q P P
Sbjct: 153 ARNRMESTEKCEAVIGHFNGKFIKTP---PGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 209
Query: 261 AQKMQLMPKVQEAQIQL-HNQFSAATQPTLHPQIQLPQN-AKNQALQQASLPGQSGIPML 318
+ +V+ A + L ++ +AA Q +P P + A N+ + Q S+ P+
Sbjct: 210 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPS---PYSIATNRMITQTSITPYIASPVS 266
Query: 319 ------PS-MHPSV----RPQIQLANSSSLNQQVHPPSLENQV--QVSASNLGQNTWTKL 365
PS M P P L S + P S+ + + Q+S +LG +T T +
Sbjct: 267 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLG-STGTYM 325
Query: 366 P-NSAMRSSFLP 376
P SAM+ ++LP
Sbjct: 326 PATSAMQGAYLP 337
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 141 (54.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 27/91 (29%), Positives = 50/91 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG + +D TE QL G + ++++ R+TG+P+G+GF + D A A +++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGG 99
G E+ + + V+ AE G + + +GG
Sbjct: 74 HGRELGNKVISVNKAEPKVGGEDVDQLKKGG 104
>UNIPROTKB|Q5T0W7 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
Uniprot:Q5T0W7
Length = 201
Score = 134 (52.2 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 2 ASSQHRC-VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
A + C +F+G +P D E++LI +C ++G + R+++D G +GY F + ++
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVE 108
Query: 61 ALSARRNLQGYEI-NGRQLRV 80
A +A + L YEI NGR L V
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGV 129
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 122 (48.0 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 62
SS+ +FVG + ++ E+ L + GP+ +V D ET + +G+GF + + E A
Sbjct: 2 SSEEGKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHAS 61
Query: 63 SARRNLQGYEINGRQLRVDFA 83
+A R G ++GRQ+ VD A
Sbjct: 62 NAMRATNGESLDGRQIHVDHA 82
>UNIPROTKB|A5PKJ6 [details] [associations]
symbol:MED15 "MED15 protein" species:9913 "Bos taurus"
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] InterPro:IPR019087 Pfam:PF09606
GO:GO:0005794 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00670000098037 eggNOG:NOG244847 CTD:51586 KO:K15157
OrthoDB:EOG4NGGMT OMA:QETDWRS HOGENOM:HOG000113523
EMBL:DAAA02045744 EMBL:DAAA02045745 EMBL:DAAA02045746
EMBL:DAAA02045747 EMBL:DAAA02045748 EMBL:BC142512 IPI:IPI00854427
RefSeq:NP_001092645.1 UniGene:Bt.10890 SMR:A5PKJ6 STRING:A5PKJ6
Ensembl:ENSBTAT00000029374 GeneID:618232 KEGG:bta:618232
HOVERGEN:HBG066558 InParanoid:A5PKJ6 NextBio:20901072
Uniprot:A5PKJ6
Length = 711
Score = 147 (56.8 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 88/314 (28%), Positives = 122/314 (38%)
Query: 147 QVGVQSNQNGIQSQLASPNDPLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXX 206
QV +Q Q Q Q A + QL + +KL QN++Q +Q
Sbjct: 172 QVALQQQQQQQQFQAQQSAMQQQFQAAVQQQQQLQQQQHLIKLHQ-QNQQQMQQQQLQRM 230
Query: 207 XXXXXXFQAQIMLGMATPQVLQMPILRQGPGHPAQPLFQDGQQ-QVAQLPGLPPLAQKMQ 265
Q Q A P + Q P L+Q P P+Q L Q Q Q Q P PP + Q
Sbjct: 231 AQLQLQQQQQQQALQAQPPI-QQPPLQQPPPPPSQALPQQLQPPQHHQAPPQPP--PQSQ 287
Query: 266 LMPKVQEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLPSMHPSV 325
P V +A L Q TQP L ++ P + Q Q +P Q+ +P + V
Sbjct: 288 PQPLVSQAPA-LPGQM-LYTQPQLK-LVRAPMVVQ-QPQVQPQVPPQTAVPTAQASQ-IV 342
Query: 326 RPQIQLANSS-------SLNQQVHPP-SLENQVQVSASNLGQNTWTKLPNSAMRSSFLPH 377
P +Q++ SS S QQVH P S+ Q S G + PNS + S P
Sbjct: 343 GPGVQVSQSSLTVLSSPSPGQQVHTPQSMPPPPQPSPQP-GPPS--SQPNSNVSSGPAPS 399
Query: 378 PPSSDAGFQPGPSTSAGIGQTVSRDAERSARVPEDGTRAHRNNAYTNMSMGLASKRSTVN 437
P S F P PS +R + + VP G N + MS S ++
Sbjct: 400 PSS----FLPSPSPQPSQSPVTARTPQNFS-VPSPGPLNTPVNPSSVMSPA-GSSQAEEQ 453
Query: 438 DPLDSISHPSKIVK 451
LD + SK ++
Sbjct: 454 QYLDKLKQLSKYIE 467
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 123 (48.4 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
+Q V+VG + +E L E+ + GPVV+ + DR TG+ +GYGF E+ EE A
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 64 ARRNLQGYEINGRQLRVDFAE-NDKGAD 90
A + + ++ G+ +RV+ A ++K D
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 65 (27.9 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 21/55 (38%), Positives = 25/55 (45%)
Query: 220 GMATPQVLQMPILRQGP---GHP-AQPLFQDGQQQVAQLPGLP-PLAQKMQLMPK 269
GM P + QM + GP GHP A P GQ PG+P P M L P+
Sbjct: 300 GMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGLPPR 354
>RGD|1308017 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308017 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE IPI:IPI00215147
Ensembl:ENSRNOT00000007736 UCSC:RGD:1308017 ArrayExpress:F1M8F0
Uniprot:F1M8F0
Length = 265
Score = 128 (50.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A+ R +FVGN+ TEE L E+ + GPV+ ++ D++ GK K + F +K E +
Sbjct: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKLKQFAFVNFKHEVSV 63
Query: 62 LSARRNLQGYEINGRQLRVDF 82
A L G ++ GR +++ F
Sbjct: 64 PYAMNLLNGIKLFGRPIKIQF 84
Score = 51 (23.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 291 PQIQLPQNAKNQALQQASLPGQSGIPMLPSM--HPSVRPQIQLANSSSLNQ 339
P+ Q N +Q S G+ G P + PSV+P N SS +Q
Sbjct: 138 PEDYQRQAVMNSVFRQMSYVGKFGSPHADQLGFSPSVQPHGHTFNQSSSSQ 188
>UNIPROTKB|F8VSC7 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01020867
ProteinModelPortal:F8VSC7 SMR:F8VSC7 Ensembl:ENST00000550704
ArrayExpress:F8VSC7 Bgee:F8VSC7 Uniprot:F8VSC7
Length = 227
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 10 FVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKP---KGYGFCEYKDEETALSARR 66
F+GN+PYD TEE + E R + + + RL RE P KG+G+ E++D ++ LSA
Sbjct: 99 FLGNLPYDVTEESIKEFFRGLN-ISAVRL--PREPSNPERLKGFGYAEFEDLDSLLSAL- 154
Query: 67 NLQGYEINGRQLRVDFAENDKGADRN-REQGR 97
+L + R++RVD A+ + DR+ R GR
Sbjct: 155 SLNEESLGNRRIRVDVADQAQDKDRDDRSFGR 186
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV + YD TE +L GP+ +V + +GKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVDFAEND--KGADRNREQGRGGPG 101
+ G +I+GR++ VD KG R R G GG G
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKGW-RPRRLG-GGLG 197
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 118 (46.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V++ N D +E+L E+ + GP +S +++ D + GK KG+GF ++ E A A +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGR 97
G ++NG+ + V A+ K +R E R
Sbjct: 252 NGKDMNGKSMFVGRAQ--KKVERQTELKR 278
Score = 97 (39.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ D TE L E GP++S R+ D T + GY + ++ A A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 QGYEINGRQLRVDFAEND 86
I GR +R+ +++ D
Sbjct: 73 NFDVIKGRPVRIMWSQRD 90
Score = 74 (31.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 283 AATQPTLHPQIQLPQNAKNQAL----QQASLPGQSGIPMLPSMHPSVRPQI-----QLAN 333
A QP +H Q Q P A A +Q + G+ P++ +MHP++ +I ++ N
Sbjct: 529 AMQQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDN 588
Query: 334 SSSLNQQVHPPSLENQVQVSASNL 357
S L+ P SL ++V + + L
Sbjct: 589 SELLHMLESPESLRSKVDEAVAVL 612
Score = 55 (24.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 44/193 (22%), Positives = 72/193 (37%)
Query: 347 ENQVQVSASNLGQNTWTKLPNSAMRSSFLPHPPSSD--AGFQPGPSTSAGIGQTVSRDAE 404
E Q ++ + + ++PN + + + P PPSS A P + +A
Sbjct: 373 ERQAHLTNQYMQRMASVRVPNPVI-NPYQP-PPSSYFMAAIPPAQNRAAYYPPGQIAQLR 430
Query: 405 RSARVPEDGTRAHRNNAYTNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGA 464
S R G R H + NM G A + + P S P+ + S A
Sbjct: 431 PSPRWTAQGARPH---PFQNMP-G-AIRPTAPRPPTFSTMRPAS---NQVPRVMSAQRVA 482
Query: 465 LNVSKPIGSAPSQAFGAGLVPVNQVPK------VEEVQYSEKQIPQISPDVESALLQQVL 518
++ +G P+ A A V VP+ V Q+ Q PQ++ + +Q
Sbjct: 483 NTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNTQ-PQVAMQQPAVHVQGQE 541
Query: 519 SLTPEQLNSLPPE 531
LT L + PP+
Sbjct: 542 PLTASMLAAAPPQ 554
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/99 (37%), Positives = 54/99 (54%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICRE-VGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
A +++R VF+ NIPYD + + ++ RE VG V L D E GK +G G E+KDEE
Sbjct: 46 AINRNR-VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEF 103
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGG 99
A + Y+++GR L + E+ +G R RGG
Sbjct: 104 VKKALETMNKYDLSGRPLNIK--EDPEGEHARRALQRGG 140
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 147 (56.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 67
C++VGN+P+ ++ L+++ ++G V+ R+ + TG+ KG+G ++++E A S+
Sbjct: 311 CIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEK 369
Query: 68 LQGYEINGRQLRVDFA 83
L GY GR L++ +A
Sbjct: 370 LNGYRYGGRPLQLSYA 385
Score = 39 (18.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 456 SGTSFSVGALNVSKPIGSAPSQAFGAGLVPVNQV 489
S T+ +G L +S P+ + P+ A + +P N +
Sbjct: 424 SFTNSFLGYLPISMPVANMPAIAPISVALPENNI 457
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV + YD TE +L GP+ +V ++ +GKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVDFAEND--KGADRNREQGRGGPG 101
+ G +I+GR++ VD KG R R G GG G
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKGW-RPRRLG-GGLG 197
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + + L+ D +TG+ KGYGF + D E A A L
Sbjct: 95 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 154
Query: 69 QGYEINGRQLRVDFAEN--DKGAD 90
G+E+ GR +RV D G D
Sbjct: 155 NGFELAGRPMRVGHVTERLDGGTD 178
>UNIPROTKB|D6REZ6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 HOGENOM:HOG000112240 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965724
ProteinModelPortal:D6REZ6 SMR:D6REZ6 Ensembl:ENST00000513473
ArrayExpress:D6REZ6 Bgee:D6REZ6 Uniprot:D6REZ6
Length = 193
Score = 131 (51.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 33/78 (42%), Positives = 43/78 (55%)
Query: 5 QHRC-VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
Q C VFVG IP D E++L+ + VG + RL++D + GK +GY F Y + A
Sbjct: 68 QRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKR 126
Query: 64 ARRNLQGYEIN-GRQLRV 80
A R L YEI GR L V
Sbjct: 127 AVRELNNYEIRPGRLLGV 144
>UNIPROTKB|Q3ZBJ1 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
GeneID:510872 KEGG:bta:510872 CTD:22916
GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
Length = 156
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+ + TEEQ+ E+ + G + + +D+ G+ F EY A +A R +
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQ 111
G ++ R +R D+ D G R+ GRG G + D +Q
Sbjct: 102 NGTRLDDRIIRTDW---DAGFKEGRQYGRGRSG-GQVRDEYRQ 140
>UNIPROTKB|E2RFC9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
Length = 156
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+ + TEEQ+ E+ + G + + +D+ G+ F EY A +A R +
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQ 111
G ++ R +R D+ D G R+ GRG G + D +Q
Sbjct: 102 NGTRLDDRIIRTDW---DAGFKEGRQYGRGRSG-GQVRDEYRQ 140
>UNIPROTKB|P52298 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
"mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
Uniprot:P52298
Length = 156
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+ + TEEQ+ E+ + G + + +D+ G+ F EY A +A R +
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQ 111
G ++ R +R D+ D G R+ GRG G + D +Q
Sbjct: 102 NGTRLDDRIIRTDW---DAGFKEGRQYGRGRSG-GQVRDEYRQ 140
>UNIPROTKB|F2Z5Q9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
Uniprot:F2Z5Q9
Length = 156
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+ + TEEQ+ E+ + G + + +D+ G+ F EY A +A R +
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQ 111
G ++ R +R D+ D G R+ GRG G + D +Q
Sbjct: 102 NGTRLDDRIIRTDW---DAGFKEGRQYGRGRSG-GQVRDEYRQ 140
>UNIPROTKB|F1RK85 [details] [associations]
symbol:MED15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] InterPro:IPR019087 Pfam:PF09606
GO:GO:0005794 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00670000098037 EMBL:CU607059
Ensembl:ENSSSCT00000011068 Uniprot:F1RK85
Length = 710
Score = 145 (56.1 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 79/313 (25%), Positives = 122/313 (38%)
Query: 147 QVGVQSNQNGIQSQLASPNDPLTLH---LAKMSRNQLNEIMSEMKLMATQNKEQARQXXX 203
QV VQ Q +Q Q + LH +M + Q + M++++L Q ++Q +
Sbjct: 167 QVAVQQQQQQLQQQQQQQQHLIKLHHQNQQQMQQQQQLQRMAQLQLQQQQQQQQQQALQA 226
Query: 204 XXXXXXXXXFQAQIMLGMATPQVLQM---PILRQGPGHPAQPLFQDGQQQVAQLPGLPPL 260
Q Q A PQ LQ P Q P P P+ Q+ Q+ PL
Sbjct: 227 QPPMQQPPMQQPQPPPSQALPQQLQQLHHPQHHQPPPQPQPPVAQNQPSQLPPQSQTQPL 286
Query: 261 AQKMQLMP-KVQEAQIQLHNQFSAATQPTLHPQIQLPQNAKNQALQQASLPGQSGIPMLP 319
+ +P ++ AQ QL + A PQ+Q PQ + Q Q ++P ++
Sbjct: 287 VSQAATLPGQMLYAQPQL--KLVRAPMVVQQPQVQ-PQ-VQPQVQPQTAVPTAQASQIVG 342
Query: 320 SMHPSVRPQIQLANSSSLNQQVHPP-SLENQVQVSASNLGQNTWTKLPNSAMRSSFLPHP 378
S + + + +S S +QQV P S+ Q S G + PNS + S P P
Sbjct: 343 SGVQVSQSSLTMLSSPSPSQQVQTPQSMPPPPQPSPQP-GPPS--SQPNSNVSSGPTPSP 399
Query: 379 PSSDAGFQPGPSTSAGIGQTVSRDAERSARVPEDGTRAHRNNAYTNMSMGLASKRSTVND 438
S F P PS +R + + VP G N + MS S ++
Sbjct: 400 SS----FLPSPSPQPSQSPVTARTPQNFS-VPSPGPLNTPVNPSSVMSPA-GSSQAEEQQ 453
Query: 439 PLDSISHPSKIVK 451
LD + SK ++
Sbjct: 454 YLDKLKQLSKYIE 466
Score = 139 (54.0 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 81/320 (25%), Positives = 123/320 (38%)
Query: 91 RNREQGRGG-PGMAAIVDPQKQLGGP--AIHGESVHHQPIGLHIAIXXXXXXXXXXXXXQ 147
R Q GG G+ A+ P G P G + H +A+ Q
Sbjct: 80 RGPGQPLGGMSGLGAMGQPMPLSGQPPPGTSGMAPHS------MAVVSTAAPQTQLQLQQ 133
Query: 148 VGVQSNQNGIQSQLASPNDPLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQXXXXXXX 207
+Q Q Q Q+A L + + Q ++ + + Q ++Q +Q
Sbjct: 134 AALQQQQQ-FQQQVALQQQQQQLQAQQSAMQQQFQVAVQQQQQQLQQQQQQQQHLIKLHH 192
Query: 208 XXXXXFQAQIMLG-MATPQVLQMPILRQGPGHPAQPLFQDGQQQVAQLPGLPPLAQKMQL 266
Q Q L MA Q+ Q +Q AQP Q Q Q P L Q++Q
Sbjct: 193 QNQQQMQQQQQLQRMAQLQLQQQQQQQQQQALQAQPPMQQPPMQQPQPPPSQALPQQLQQ 252
Query: 267 MPKVQEAQIQLHNQFSAA-TQPTLHPQIQLPQNAKNQAL--QQASLPGQS--GIPMLPSM 321
+ Q Q Q A QP+ QLP ++ Q L Q A+LPGQ P L +
Sbjct: 253 LHHPQHHQPPPQPQPPVAQNQPS-----QLPPQSQTQPLVSQAATLPGQMLYAQPQLKLV 307
Query: 322 H-PSV--RPQIQLANSSSLNQQVHPPSLE-NQVQVSASNLGQNTWTKL----PNSAMRS- 372
P V +PQ+Q + Q P+ + +Q+ S + Q++ T L P+ +++
Sbjct: 308 RAPMVVQQPQVQPQVQPQVQPQTAVPTAQASQIVGSGVQVSQSSLTMLSSPSPSQQVQTP 367
Query: 373 SFLPHPPSSDAGFQPGPSTS 392
+P PP QPGP +S
Sbjct: 368 QSMPPPPQPSP--QPGPPSS 385
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV + YD TE +L GP+ +V + +GKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVDFAEND--KGADRNREQGRGGPG 101
+ G +I+GR++ VD KG R R G GG G
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKGW-RPRRLG-GGLG 197
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 123 (48.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
+Q V+VG + +E L E+ + GPVV+ + DR TG+ +GYGF E+ EE A
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 64 ARRNLQGYEINGRQLRVDFAE-NDKGAD 90
A + + ++ G+ +RV+ A ++K D
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 63 (27.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 220 GMATPQVLQMPILRQGP---GHP-AQPLFQDGQQQVAQLPGLP-PLAQKMQLMPK 269
GM P + QM + GP GHP A P GQ PG+P P M + P+
Sbjct: 300 GMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 123 (48.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
+Q V+VG + +E L E+ + GPVV+ + DR TG+ +GYGF E+ EE A
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 64 ARRNLQGYEINGRQLRVDFAE-NDKGAD 90
A + + ++ G+ +RV+ A ++K D
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 63 (27.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 220 GMATPQVLQMPILRQGP---GHP-AQPLFQDGQQQVAQLPGLP-PLAQKMQLMPK 269
GM P + QM + GP GHP A P GQ PG+P P M + P+
Sbjct: 300 GMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 123 (48.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
+Q V+VG + +E L E+ + GPVV+ + DR TG+ +GYGF E+ EE A
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 64 ARRNLQGYEINGRQLRVDFAE-NDKGAD 90
A + + ++ G+ +RV+ A ++K D
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 63 (27.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 220 GMATPQVLQMPILRQGP---GHP-AQPLFQDGQQQVAQLPGLP-PLAQKMQLMPK 269
GM P + QM + GP GHP A P GQ PG+P P M + P+
Sbjct: 300 GMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 123 (48.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
+Q V+VG + +E L E+ + GPVV+ + DR TG+ +GYGF E+ EE A
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 64 ARRNLQGYEINGRQLRVDFAE-NDKGAD 90
A + + ++ G+ +RV+ A ++K D
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 63 (27.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 220 GMATPQVLQMPILRQGP---GHP-AQPLFQDGQQQVAQLPGLP-PLAQKMQLMPK 269
GM P + QM + GP GHP A P GQ PG+P P M + P+
Sbjct: 300 GMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 123 (48.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
+Q V+VG + +E L E+ + GPVV+ + DR TG+ +GYGF E+ EE A
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 64 ARRNLQGYEINGRQLRVDFAE-NDKGAD 90
A + + ++ G+ +RV+ A ++K D
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 63 (27.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 220 GMATPQVLQMPILRQGP---GHP-AQPLFQDGQQQVAQLPGLP-PLAQKMQLMPK 269
GM P + QM + GP GHP A P GQ PG+P P M + P+
Sbjct: 300 GMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV + YD TE +L GP+ +V + +GKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVDFAEND--KGADRNREQGRGGPG 101
+ G +I+GR++ VD KG R R G GG G
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKGW-RPRRLG-GGLG 197
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV + YD TE +L GP+ +V + +GKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVDFAEND--KGADRNREQGRGGPG 101
+ G +I+GR++ VD KG R R G GG G
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKGW-RPRRLG-GGLG 197
WARNING: HSPs involving 556 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.128 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 551 513 0.00088 119 3 11 23 0.47 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 806
No. of states in DFA: 608 (65 KB)
Total size of DFA: 255 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 54.55u 0.09s 54.64t Elapsed: 00:00:02
Total cpu time: 54.59u 0.09s 54.68t Elapsed: 00:00:02
Start: Sat May 11 05:02:59 2013 End: Sat May 11 05:03:01 2013
WARNINGS ISSUED: 2