BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008851
(551 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 120/223 (53%), Gaps = 55/223 (24%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESVHHQP 126
NL G E +GR LRVD A ++K + + G G P I P +GES+
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESP---------YGESI---- 119
Query: 127 IGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPNDP---LTLHLAKMSRNQLNEI 183
SP D ++ +A + Q+ E+
Sbjct: 120 ------------------------------------SPEDAPESISKAVASLPPEQMFEL 143
Query: 184 MSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQV 226
M +MKL + ++AR +LL P L AL QAQ+++ + P++
Sbjct: 144 MKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEI 186
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
Query: 510 ESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQMQPS 551
++AL+ QVL LT +Q+ LPPEQRQ ++ +L++Q+Q S
Sbjct: 540 KAALIMQVLQLTADQIAMLPPEQRQSIL-----ILKEQIQKS 576
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 120/223 (53%), Gaps = 55/223 (24%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESVHHQP 126
NL G E +GR LRVD A ++K + + G G P I P +GE++
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESP---------YGETI---- 119
Query: 127 IGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPNDP---LTLHLAKMSRNQLNEI 183
SP D ++ +A + Q+ E+
Sbjct: 120 ------------------------------------SPEDAPESISKAVASLPPEQMFEL 143
Query: 184 MSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQV 226
M +MKL + ++AR +LL P L AL QAQ+++ + P++
Sbjct: 144 MKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEI 186
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
Query: 510 ESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQMQPS 551
++AL+ QVL LT +Q+ LPPEQRQ ++ +L++Q+Q S
Sbjct: 532 KAALIMQVLQLTADQIAMLPPEQRQSIL-----ILKEQIQKS 568
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 120/223 (53%), Gaps = 55/223 (24%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESVHHQP 126
NL G E +GR LRVD A ++K + + G G P I P +GE++
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESP---------YGETI---- 119
Query: 127 IGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPNDP---LTLHLAKMSRNQLNEI 183
SP D ++ +A + Q+ E+
Sbjct: 120 ------------------------------------SPEDAPESISKAVASLPPEQMFEL 143
Query: 184 MSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQV 226
M +MKL + ++AR +LL P L AL QAQ+++ + P++
Sbjct: 144 MKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEI 186
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
Query: 510 ESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQMQPS 551
++AL+ QVL LT +Q+ LPPEQRQ ++ +L++Q+Q S
Sbjct: 537 KAALIMQVLQLTADQIAMLPPEQRQSIL-----ILKEQIQKS 573
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 120/223 (53%), Gaps = 55/223 (24%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESVHHQP 126
NL G E +GR LRVD A ++K + + G G P I P +GE++
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAP---VIESP---------YGETI---- 119
Query: 127 IGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPNDP---LTLHLAKMSRNQLNEI 183
SP D ++ +A + Q+ E+
Sbjct: 120 ------------------------------------SPEDAPESISKAVASLPPEQMFEL 143
Query: 184 MSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQV 226
M +MKL + ++AR +LL P L AL QAQ+++ + P++
Sbjct: 144 MKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEI 186
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
Query: 510 ESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQMQPS 551
++AL+ QVL LT +Q+ LPPEQRQ ++ +L++Q+Q S
Sbjct: 537 KAALIMQVLQLTADQIAMLPPEQRQSIL-----ILKEQIQKS 573
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 120/226 (53%), Gaps = 61/226 (26%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESVHHQP 126
NL G E +GR LRVD A ++K N+E+ K L GPA P
Sbjct: 76 NLNGREFSGRALRVDNAASEK----NKEE-------------LKSL-GPAA--------P 109
Query: 127 IGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPNDP------LTLHLAKMSRNQL 180
I I S P DP +T +A + Q+
Sbjct: 110 I-----------------------------IDSPYGDPIDPEDAPESITRAVASLPPEQM 140
Query: 181 NEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQV 226
E+M +MKL + ++AR +LL P L AL QAQ+++ + P++
Sbjct: 141 FELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEI 186
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
Query: 510 ESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQMQPS 551
++AL+ QVL LT +Q+ LPPEQRQ ++ +L++Q+Q S
Sbjct: 576 KAALIMQVLQLTADQIAMLPPEQRQSIL-----ILKEQIQKS 612
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 119/226 (52%), Gaps = 61/226 (26%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESVHHQP 126
NL G E +GR LRVD A ++K N+E+ K LG
Sbjct: 76 NLNGREFSGRALRVDNAASEK----NKEE-------------LKSLG------------- 105
Query: 127 IGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPNDP------LTLHLAKMSRNQL 180
AA + I S P DP +T +A + Q+
Sbjct: 106 -------PAAPI------------------IDSPYGDPIDPEDAPESITRAVASLPPEQM 140
Query: 181 NEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQV 226
E+M +MKL + ++AR +LL P L AL QAQ+++ + P++
Sbjct: 141 FELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEI 186
Score = 36.6 bits (83), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
Query: 510 ESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQMQPS 551
++AL+ QVL LT +Q+ LPPEQRQ ++ +L++Q+Q S
Sbjct: 592 KAALIMQVLQLTADQIAMLPPEQRQSIL-----ILKEQIQKS 628
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 109/210 (51%), Gaps = 7/210 (3%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VGNIPY+ EEQ+I+I ++ GPV SF+LVID E+G+PKGYGFCEY D TA SA RNL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 69 QGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESVHHQPIG 128
Y+ R+LRVDF D+ ++ G G PQ +G + P
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYY----PQSYANQSYTYGNNFGSYP-P 121
Query: 129 LHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPNDPLTLHLAKMSRNQLNEIMSEMK 188
+ G G + LA ND + LA+++ N+++ ++S +K
Sbjct: 122 TQPSTQPLPQSYGYPSYPPAGYRGGSARPSGVLA--NDEVYRVLAQLAPNEIDYMLSAIK 179
Query: 189 LMATQNKEQARQLLLAKPPLLKALFQAQIM 218
+ + EQA QL P L A+FQA +M
Sbjct: 180 ALCLEAPEQAAQLFETNPQLSYAVFQAMLM 209
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 31/35 (88%)
Query: 509 VESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQAL 543
++AL+ Q+++LT +Q+N LPP+Q+++++Q++QAL
Sbjct: 379 TKAALIAQLMALTDDQINVLPPDQKERILQIRQAL 413
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 133/285 (46%), Gaps = 56/285 (19%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M+ + VFVGNIPYD +E+Q+ EI +VGPV +F+LV+D ETG KGYGFCE+ D ET
Sbjct: 1 MSMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET 60
Query: 61 ALSARRNLQGYEINGRQLRVDFAEND----------KGADRNREQ---------GRGGPG 101
A R L E+ R++RV+F ND + DR EQ R P
Sbjct: 61 TAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNAHESSYNSRFIPP 120
Query: 102 MAAIVD--PQKQLGG---PAIHGESVHHQPIGLHIAITAAAV--------MTGALGAA-- 146
+ P Q GG PAI+ S+ L+ I + +V MT +A
Sbjct: 121 VLHSTSSLPASQGGGMPSPAIYSSSM---ATNLNKNINSTSVPAYNFHNSMTSDFDSASQ 177
Query: 147 -----------QVGVQSNQNGIQSQLASPNDPLTLHLA--------KMSRNQLNEIMSEM 187
Q S G + S ++P ++ LA S +L ++S++
Sbjct: 178 PHTDAYNARTFQYNKSSQNKGDYTSGTSISNPTSIPLAPSVVQVLSTFSAQELLNMLSKL 237
Query: 188 KLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQVLQMPIL 232
+ + E+AR+LL+A P L A FQA +++ + VLQ ++
Sbjct: 238 QTVVHIAPEEARRLLIANPALPYAAFQAMLLMNLVDANVLQQVVV 282
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 28/34 (82%)
Query: 512 ALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLR 545
AL+QQ+L+LTPEQ+N+LPP QR Q++ +++ R
Sbjct: 329 ALIQQLLALTPEQINALPPAQRDQILSIRRQHFR 362
>sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1
Length = 296
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 59/79 (74%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R V++G+IPYD TEEQ++++C VGPV++ +++ D +TG+ KGY F E++D E++ SA R
Sbjct: 18 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 77
Query: 67 NLQGYEINGRQLRVDFAEN 85
NL GY++ R L+ ++ N
Sbjct: 78 NLNGYQLGSRFLKCGYSSN 96
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 69 QGYEINGRQLRVDFAEN 85
G +I GR +RVD N
Sbjct: 98 NGIKIKGRTIRVDHVSN 114
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 7 RC-----VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
RC +F+G + Y E+ L E + G VV R+++DRETG+ +G+GF + E A
Sbjct: 35 RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94
Query: 62 LSARRNLQGYEINGRQLRVDFAENDK 87
SA + L G +++GR ++V++A ND+
Sbjct: 95 SSAIQALDGRDLHGRVVKVNYA-NDR 119
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 69 QGYEINGRQLRVDFAEN 85
G +I GR +RVD N
Sbjct: 98 NGIKIKGRTIRVDHVSN 114
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGNIP+D + +L ++ E G VVS R+V DRE+G+ +G+GF E A NL
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252
Query: 69 QGYEINGRQLRVDFAE 84
G ++GR +RV+ AE
Sbjct: 253 DGQTLDGRTIRVNAAE 268
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
S+ +FVGN+PYD E L ++ ++ G V ++ +RET + +G+GF E A
Sbjct: 94 SEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADK 153
Query: 64 ARRNLQGYEINGRQLRVD 81
A Y++NGR L V+
Sbjct: 154 AVELYSQYDLNGRLLTVN 171
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G +PY+ TE +I + + G +V+ LV D++TGK KG+ F Y+D+ + + A N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 69 QGYEINGRQLRVDFAEN 85
G +I GR +RVD N
Sbjct: 98 NGIKIKGRTIRVDHVAN 114
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
VFVG IPYD TE L+ + + G VV LV D+ TGK KG+ F Y+D+ + + A NL
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 69 QGYEINGRQLRVD 81
G ++ GR +RVD
Sbjct: 98 NGAKVLGRIVRVD 110
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGNIP+ + +L ++ E G VVS R+V DRETG+ +G+GF E A NL
Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291
Query: 69 QGYEINGRQLRVDFAENDKGADRNR 93
G ++GR +RV+ AE DR+R
Sbjct: 292 DGQSLDGRTIRVNVAE-----DRSR 311
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVGN+PYD E L + + G V ++ +R+T + +G+GF E A A
Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMY 197
Query: 69 QGYEINGRQLRVD 81
Y++NGR L V+
Sbjct: 198 NRYDVNGRLLTVN 210
>sp|Q9P383|NCBP2_SCHPO Nuclear cap-binding protein subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cbc2 PE=3 SV=1
Length = 182
Score = 66.6 bits (161), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A Q CV+VGN+ + TEEQ+ + + G + + +DR T P G+ F EY + + A
Sbjct: 27 AVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDA 86
Query: 62 LSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGES 121
L + + + ++ R +R D D G + R+ GRG G + D ++ P G +
Sbjct: 87 LDSLKYISRTSLDERIIRADL---DHGYEEGRQYGRGASG-GQVRDEMREEFDPGRGGYA 142
Query: 122 VHHQPIGLHIAITAAAVMTGALGAAQVGVQSN 153
+ QP + + + LG++ + +QSN
Sbjct: 143 KNRQPTSSRQLANYSGISSAPLGSS-LELQSN 173
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 65.5 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEIC-REVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
A +++RC FVG + + AT+EQ IE C E G V +++IDRETG+ KG+ F +KDE++
Sbjct: 4 ADNEYRC-FVGGLAW-ATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDS 61
Query: 61 ALSARRNLQGYEINGRQL 78
+A + G E++GR +
Sbjct: 62 MRTAIDRMNGQELDGRNI 79
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY TE Q+ E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 361 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 420
Query: 69 QGYEINGRQLRV 80
G ++ + L V
Sbjct: 421 NGIKMGDKTLTV 432
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY TE Q+ E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 360 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 419
Query: 69 QGYEINGRQLRV 80
G ++ + L V
Sbjct: 420 NGIKMGDKTLTV 431
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY TE Q+ E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 69 QGYEINGRQLRV 80
G ++ + L V
Sbjct: 437 NGIKMGDKTLTV 448
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY TE Q+ E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 336 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 395
Query: 69 QGYEINGRQLRV 80
G ++ + L V
Sbjct: 396 NGIKMGDKTLTV 407
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY TE Q+ E+ GP+ F +V D+ETG KGY FC YKD A L
Sbjct: 394 IFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAAL 453
Query: 69 QGYEINGRQLRV 80
G ++ R L V
Sbjct: 454 NGIQLGDRTLTV 465
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY TE Q+ E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 329 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 388
Query: 69 QGYEINGRQLRV 80
G ++ + L V
Sbjct: 389 NGIKMGDKTLTV 400
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 63.9 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MA ++RC FVG + + +E L + + G + +++ DRETG+ +G+GF +KDE++
Sbjct: 1 MAEVEYRC-FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKS 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAEN 85
A + G E++GR + V+ A++
Sbjct: 60 MRDAIEGMNGQELDGRNITVNEAQS 84
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VGN+P+D +L ++ E G VV R+V DRETG+ +G+GF D + A L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 69 QGYEINGRQLRVDFAE 84
G + GR +RV+ AE
Sbjct: 306 DGQNLEGRAIRVNVAE 321
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 63
S+ +FVGN+ YD + L + + G V ++ +RET + +G+GF + A +
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 64 ARRNLQGYEINGRQLRVDFA 83
A Y++NGR L V+ A
Sbjct: 207 AVEKFNRYDLNGRLLTVNKA 226
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VGN+P+D +L ++ E G VVS R+V DRETG+ +G+GF E A L
Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210
Query: 69 QGYEINGRQLRVDFAE 84
G ++GR +RV+ AE
Sbjct: 211 DGQTLDGRAVRVNVAE 226
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVGN+PYD E+L I G V ++ +RET + +G+GF E A A L
Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELL 116
Query: 69 QGYEINGRQLRVDFA 83
GY+++GRQL V+ A
Sbjct: 117 NGYDMDGRQLTVNKA 131
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 62.8 bits (151), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+F+G + + + L + G VV ++++DRETG+ +G+GF + DE A +A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 69 QGYEINGRQLRVDFAENDKGADR 91
G E+NGR +RV+ A + A R
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPR 119
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VG++ ++ TE+ L I G + S +L++D ETG+ KGYGF + D E A A L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 69 QGYEINGRQLRV 80
G+E+ GR ++V
Sbjct: 312 NGFELAGRPMKV 323
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 62.8 bits (151), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+ YD TEE L + E G V +L +DRETG+ +G+GF E + +A L
Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEAL 62
Query: 69 QGYEINGRQLRVDFAE 84
G E GR L+V+ A+
Sbjct: 63 DGAEWMGRDLKVNKAK 78
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 62.4 bits (150), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A ++RC FVG + + E L + G V+ +++ DRETG+ +G+GF + E++
Sbjct: 4 ADVEYRC-FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSM 62
Query: 62 LSARRNLQGYEINGRQLRVDFAEN 85
L A N+ G E++GR + V+ A++
Sbjct: 63 LDAIENMNGKELDGRNITVNQAQS 86
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 7 RC-----VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
RC +FVG I Y E L E + G VV ++++DRETG+ +G+ F + E A
Sbjct: 29 RCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEA 88
Query: 62 LSARRNLQGYEINGRQLRVDFA 83
+A + L G +++GR++RV++A
Sbjct: 89 SNAMQ-LDGQDLHGRRIRVNYA 109
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++VGN+P+ T QL EI E G V + +V DR T + +G+ F E A A R
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175
Query: 69 QGYEINGRQLRVDFAENDKGADR 91
G ++ GR ++V+F E +G +R
Sbjct: 176 DGSQVGGRTVKVNFPEVPRGGER 198
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
++V N+ + T + L + + +S +++ DR +G+ +G+GF + E SA +
Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278
Query: 69 QGYEINGRQLRVDFA 83
E+ GR LR++ A
Sbjct: 279 NEVELEGRPLRLNVA 293
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVG +PY TE Q+ E+ G + F LV DRETG KGY FC Y+D A L
Sbjct: 343 IFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 402
Query: 69 QGYEINGRQLRV 80
G ++ + L V
Sbjct: 403 NGIKMGDKTLTV 414
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 67
C++VGN+P+ ++ L+++ ++G V+ R+ + TG+ KG+G ++++E A S+
Sbjct: 311 CIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEK 369
Query: 68 LQGYEINGRQLRVDFA 83
L GY GR L++ +A
Sbjct: 370 LNGYRYGGRPLQLSYA 385
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R +FVGN+PY+ + L ++ R+ G V+ + +++E G+ +G G + A+ A +
Sbjct: 179 RQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQ 237
Query: 67 NLQGYEINGRQLRV 80
L + GR L V
Sbjct: 238 MLHNTDFMGRTLEV 251
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 64
Q R V+VGN+ Y +L E +VG V++ +++ G KG EY E A +A
Sbjct: 75 QERRVYVGNLSYQVRWFELKEFMGQVGNVLNCE-ILNLPNGLSKGCAIIEYSTAEEARTA 133
Query: 65 RRNLQGYEINGRQLRV 80
+ L + GR + +
Sbjct: 134 IKTLSNQKFMGRLVYI 149
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV + YD TE +L GP+ +V ++ +GKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVD 81
+ G +I+GR++ VD
Sbjct: 163 HADGKKIDGRRVLVD 177
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
V+VGN+ + + L + E G VV R++ DR++G+ KG+GF Y + +A ++L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 69 QGYEINGRQLRVDFAE 84
G +++GRQ+RV AE
Sbjct: 266 DGADLDGRQIRVSEAE 281
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
+FVGN+P++ QL ++ G V ++ D+ TG+ +G+GF +A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 69 QGYEINGRQLRVD 81
GYE++GR LRV+
Sbjct: 153 NGYELDGRPLRVN 165
>sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP13 PE=1 SV=2
Length = 403
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
R +FVGN+ +D T++ L + + G +V R+ ++GK KG+ F ++K+EE + +A +
Sbjct: 239 RILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNALK 298
Query: 67 NLQGYEINGRQLRVDFAENDKGADRNREQGR 97
+ +I GR LR+++ G DR++ Q R
Sbjct: 299 DKSCRKIAGRPLRMEY-----GEDRSKRQVR 324
>sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwf29 PE=1 SV=1
Length = 217
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 1 MASSQHR------CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCE 54
+SS H+ +++GN+ +D E+ ++ + E G V LV D+ETGK KG+ F +
Sbjct: 19 FSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLK 78
Query: 55 YKDEETALSARRNLQGYEINGRQLRVD 81
Y+D+ + + A N+ ++ R +RVD
Sbjct: 79 YEDQRSTVLAVDNMTNVKLLDRLVRVD 105
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV + YD TE +L GP+ +V + +GKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVD 81
+ G +I+GR++ VD
Sbjct: 163 HADGKKIDGRRVLVD 177
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
MAS + + +FVG + +D E+ L ++ + G + +V DRET + +G+GF +++ +
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQG-RGG 99
A A + G ++GRQ+RVD A K +D NR +G RGG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA--GKSSD-NRSRGYRGG 96
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M+ ++RC FVG + + +E L + G V+ +++ DRE+G+ +G+GF +KDE+
Sbjct: 1 MSEVEYRC-FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKA 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAE 84
A + G E++GR + V+ A+
Sbjct: 60 MRDAIEEMNGKELDGRVITVNEAQ 83
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 60
M+ ++RC FVG + + + +L + G V+ +++ DRETG+ +G+GF +KDE++
Sbjct: 1 MSEVEYRC-FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKS 59
Query: 61 ALSARRNLQGYEINGRQLRVDFAEN 85
A + G E++GR + V+ A++
Sbjct: 60 MKDAIDEMNGKELDGRTITVNEAQS 84
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 61
A ++RC FVG + + + E L G ++ +++ DRETG+ +G+GF + E +
Sbjct: 4 ADVEYRC-FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSM 62
Query: 62 LSARRNLQGYEINGRQLRVDFAEN 85
L A N+ G E++GR + V+ A++
Sbjct: 63 LDAIENMNGKELDGRNITVNQAQS 86
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV + YD TE +L GP+ +V + +GKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVD 81
+ G +I+GR++ VD
Sbjct: 163 HADGKKIDGRRVLVD 177
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66
+ +FV + YD TE +L GP+ +V + +GKP+GY F EY+ E SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 67 NLQGYEINGRQLRVD 81
+ G +I+GR++ VD
Sbjct: 163 HADGKKIDGRRVLVD 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,103,623
Number of Sequences: 539616
Number of extensions: 8664632
Number of successful extensions: 25241
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 503
Number of HSP's that attempted gapping in prelim test: 22565
Number of HSP's gapped (non-prelim): 2805
length of query: 551
length of database: 191,569,459
effective HSP length: 123
effective length of query: 428
effective length of database: 125,196,691
effective search space: 53584183748
effective search space used: 53584183748
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)