Query 008851
Match_columns 551
No_of_seqs 357 out of 1731
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 17:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0108 mRNA cleavage and poly 100.0 1.2E-27 2.7E-32 255.8 20.1 181 7-236 19-201 (435)
2 PLN03134 glycine-rich RNA-bind 99.8 2.4E-18 5.1E-23 160.1 15.8 84 5-88 33-116 (144)
3 PF14327 CSTF2_hinge: Hinge do 99.7 1.6E-18 3.6E-23 147.8 3.4 70 163-232 14-83 (84)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.1E-16 1.3E-20 159.8 12.9 82 6-87 269-350 (352)
5 TIGR01659 sex-lethal sex-letha 99.6 4.2E-15 9E-20 156.4 15.6 84 5-88 192-277 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2.2E-15 4.8E-20 155.7 12.4 82 5-86 2-83 (352)
7 TIGR01659 sex-lethal sex-letha 99.6 2.5E-15 5.4E-20 158.1 11.1 82 4-85 105-186 (346)
8 KOG0113 U1 small nuclear ribon 99.6 6.6E-15 1.4E-19 149.2 12.3 90 4-93 99-188 (335)
9 PF00076 RRM_1: RNA recognitio 99.6 8.2E-15 1.8E-19 116.1 10.3 70 9-79 1-70 (70)
10 KOG0149 Predicted RNA-binding 99.6 2.7E-15 5.9E-20 148.0 7.3 79 6-85 12-90 (247)
11 KOG0121 Nuclear cap-binding pr 99.5 2.8E-14 6E-19 129.9 7.5 82 4-85 34-115 (153)
12 TIGR01645 half-pint poly-U bin 99.5 1.4E-13 3.1E-18 153.4 13.2 82 5-86 203-284 (612)
13 PF14259 RRM_6: RNA recognitio 99.5 1.7E-13 3.6E-18 110.2 9.6 70 9-79 1-70 (70)
14 KOG0126 Predicted RNA-binding 99.5 4.5E-15 9.8E-20 141.7 0.5 81 5-85 34-114 (219)
15 TIGR01645 half-pint poly-U bin 99.5 1.1E-13 2.3E-18 154.4 10.5 80 5-84 106-185 (612)
16 KOG0105 Alternative splicing f 99.5 1.9E-13 4.1E-18 131.1 10.3 84 1-87 1-84 (241)
17 TIGR01628 PABP-1234 polyadenyl 99.5 2.8E-13 6E-18 149.7 12.2 79 8-86 2-80 (562)
18 KOG0122 Translation initiation 99.5 2.3E-13 4.9E-18 135.1 9.9 82 5-86 188-269 (270)
19 COG0724 RNA-binding proteins ( 99.4 5E-13 1.1E-17 127.0 10.7 80 6-85 115-194 (306)
20 KOG0107 Alternative splicing f 99.4 3.9E-13 8.4E-18 127.9 9.7 79 5-88 9-87 (195)
21 KOG0125 Ataxin 2-binding prote 99.4 3.1E-13 6.6E-18 138.6 9.2 82 4-87 94-175 (376)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.4 8.3E-13 1.8E-17 143.4 13.0 82 5-86 294-375 (509)
23 smart00362 RRM_2 RNA recogniti 99.4 1E-12 2.2E-17 102.0 9.8 72 8-81 1-72 (72)
24 TIGR01622 SF-CC1 splicing fact 99.4 8.5E-13 1.8E-17 141.7 11.7 80 6-85 186-265 (457)
25 PLN03120 nucleic acid binding 99.4 8.3E-13 1.8E-17 133.4 10.8 76 6-85 4-79 (260)
26 smart00360 RRM RNA recognition 99.4 1E-12 2.2E-17 101.4 8.9 71 11-81 1-71 (71)
27 TIGR01628 PABP-1234 polyadenyl 99.4 1.1E-12 2.4E-17 145.0 11.6 81 5-86 284-364 (562)
28 TIGR01622 SF-CC1 splicing fact 99.4 1.7E-12 3.7E-17 139.3 11.8 80 5-85 88-167 (457)
29 KOG0130 RNA-binding protein RB 99.4 1.2E-12 2.5E-17 120.3 7.5 83 5-87 71-153 (170)
30 KOG0148 Apoptosis-promoting RN 99.4 1.3E-12 2.9E-17 131.2 8.2 83 5-87 61-143 (321)
31 PLN03213 repressor of silencin 99.4 2.1E-12 4.6E-17 137.8 9.7 77 5-85 9-87 (759)
32 TIGR01648 hnRNP-R-Q heterogene 99.3 2.4E-12 5.3E-17 143.2 10.4 79 5-84 57-136 (578)
33 KOG4207 Predicted splicing fac 99.3 2.8E-12 6E-17 124.9 9.2 83 6-88 13-95 (256)
34 KOG0117 Heterogeneous nuclear 99.3 3.2E-12 7E-17 135.3 9.7 82 4-85 81-163 (506)
35 cd00590 RRM RRM (RNA recogniti 99.3 1.3E-11 2.7E-16 96.3 10.6 74 8-82 1-74 (74)
36 KOG4212 RNA-binding protein hn 99.3 5.6E-12 1.2E-16 133.1 10.5 86 5-91 43-129 (608)
37 TIGR01648 hnRNP-R-Q heterogene 99.3 1E-11 2.2E-16 138.2 13.1 75 6-88 233-309 (578)
38 KOG0148 Apoptosis-promoting RN 99.3 1.1E-11 2.4E-16 124.7 10.9 80 3-88 161-240 (321)
39 KOG0131 Splicing factor 3b, su 99.3 2.6E-12 5.6E-17 123.0 6.0 81 4-84 7-87 (203)
40 KOG0111 Cyclophilin-type pepti 99.3 2.1E-12 4.5E-17 126.7 4.6 86 5-90 9-94 (298)
41 KOG0144 RNA-binding protein CU 99.3 4.7E-12 1E-16 133.7 7.5 85 5-89 33-120 (510)
42 KOG0114 Predicted RNA-binding 99.3 1.6E-11 3.4E-16 108.5 9.0 79 5-86 17-95 (124)
43 PLN03121 nucleic acid binding 99.3 2.1E-11 4.5E-16 121.9 11.0 77 5-85 4-80 (243)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 2.5E-11 5.4E-16 132.7 11.3 76 5-86 1-78 (481)
45 KOG0145 RNA-binding protein EL 99.2 2.3E-11 4.9E-16 121.9 9.3 82 6-87 41-122 (360)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 4.5E-11 9.8E-16 130.6 11.6 78 5-87 274-352 (481)
47 KOG0127 Nucleolar protein fibr 99.2 2.6E-11 5.7E-16 131.0 9.4 83 5-87 291-379 (678)
48 KOG0144 RNA-binding protein CU 99.2 1.3E-11 2.7E-16 130.5 5.3 87 5-92 123-212 (510)
49 smart00361 RRM_1 RNA recogniti 99.2 1.6E-10 3.5E-15 94.3 8.7 61 20-80 2-69 (70)
50 KOG0145 RNA-binding protein EL 99.1 2.8E-10 6.1E-15 114.2 10.0 82 5-86 277-358 (360)
51 PF14304 CSTF_C: Transcription 99.1 8.5E-11 1.8E-15 89.4 4.3 41 508-548 5-45 (46)
52 KOG0124 Polypyrimidine tract-b 99.1 5.7E-11 1.2E-15 123.4 4.4 77 7-83 114-190 (544)
53 KOG0415 Predicted peptidyl pro 99.1 1.4E-10 2.9E-15 120.3 7.1 83 3-85 236-318 (479)
54 KOG0109 RNA-binding protein LA 99.1 1.6E-10 3.4E-15 117.5 6.9 72 7-86 3-74 (346)
55 KOG0117 Heterogeneous nuclear 99.1 3.9E-10 8.5E-15 119.8 10.1 79 6-92 259-337 (506)
56 PF13893 RRM_5: RNA recognitio 99.1 6.5E-10 1.4E-14 86.4 8.5 56 23-83 1-56 (56)
57 KOG0127 Nucleolar protein fibr 99.0 8.4E-10 1.8E-14 119.5 9.6 82 5-87 116-197 (678)
58 KOG4205 RNA-binding protein mu 99.0 3.3E-10 7.1E-15 117.8 5.7 87 1-88 1-87 (311)
59 KOG0116 RasGAP SH3 binding pro 99.0 2.2E-09 4.8E-14 115.5 12.0 83 6-89 288-370 (419)
60 KOG0146 RNA-binding protein ET 99.0 6.1E-10 1.3E-14 112.1 5.6 86 2-87 281-366 (371)
61 KOG0147 Transcriptional coacti 99.0 7.4E-10 1.6E-14 120.2 6.3 78 9-86 281-358 (549)
62 KOG0131 Splicing factor 3b, su 98.9 1.4E-09 3.1E-14 104.4 6.2 82 6-87 96-178 (203)
63 KOG4208 Nucleolar RNA-binding 98.9 4.6E-09 1E-13 102.6 8.2 81 6-86 49-130 (214)
64 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.1E-08 2.4E-13 111.4 10.6 83 4-86 407-502 (509)
65 KOG0124 Polypyrimidine tract-b 98.8 5.6E-09 1.2E-13 108.8 7.7 82 6-87 210-291 (544)
66 KOG4206 Spliceosomal protein s 98.8 1.8E-08 3.8E-13 99.6 8.7 83 2-87 5-91 (221)
67 KOG0146 RNA-binding protein ET 98.8 4.2E-09 9.2E-14 106.2 4.0 83 5-88 18-103 (371)
68 KOG0109 RNA-binding protein LA 98.8 8E-09 1.7E-13 105.2 5.7 76 5-88 77-152 (346)
69 KOG4212 RNA-binding protein hn 98.8 1.3E-08 2.9E-13 108.0 7.3 76 3-83 533-608 (608)
70 KOG0123 Polyadenylate-binding 98.7 2.3E-08 4.9E-13 106.6 8.8 78 7-87 77-154 (369)
71 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.6E-08 7.7E-13 107.4 8.9 82 6-87 405-486 (940)
72 KOG4205 RNA-binding protein mu 98.7 2.2E-08 4.8E-13 104.3 7.1 82 6-88 97-178 (311)
73 KOG0132 RNA polymerase II C-te 98.7 4.2E-08 9.1E-13 110.0 8.1 76 6-87 421-496 (894)
74 KOG0110 RNA-binding protein (R 98.7 1.7E-08 3.7E-13 112.3 4.6 82 6-87 613-694 (725)
75 KOG0123 Polyadenylate-binding 98.6 7.3E-08 1.6E-12 102.8 8.3 75 7-87 2-76 (369)
76 KOG0106 Alternative splicing f 98.6 5.2E-08 1.1E-12 96.6 5.5 73 7-87 2-74 (216)
77 KOG0110 RNA-binding protein (R 98.6 1.1E-07 2.4E-12 106.1 8.5 78 7-84 516-596 (725)
78 KOG0153 Predicted RNA-binding 98.6 1.6E-07 3.5E-12 97.7 9.2 74 6-85 228-302 (377)
79 KOG0533 RRM motif-containing p 98.6 2.3E-07 4.9E-12 93.7 9.2 83 5-88 82-164 (243)
80 KOG4209 Splicing factor RNPS1, 98.6 1.2E-07 2.5E-12 95.3 7.0 82 4-86 99-180 (231)
81 KOG0226 RNA-binding proteins [ 98.5 6E-08 1.3E-12 97.4 3.8 82 5-86 189-270 (290)
82 KOG1548 Transcription elongati 98.4 5.9E-07 1.3E-11 93.6 9.0 84 3-87 131-222 (382)
83 KOG1457 RNA binding protein (c 98.4 1.2E-06 2.7E-11 86.8 9.8 88 5-92 33-124 (284)
84 KOG4849 mRNA cleavage factor I 98.4 8.4E-06 1.8E-10 85.2 15.5 77 6-82 80-158 (498)
85 PF04059 RRM_2: RNA recognitio 98.2 8.5E-06 1.8E-10 71.8 10.0 79 7-85 2-86 (97)
86 KOG0120 Splicing factor U2AF, 98.2 7.7E-07 1.7E-11 97.6 3.9 83 5-87 288-370 (500)
87 KOG4454 RNA binding protein (R 98.2 5.6E-07 1.2E-11 89.0 2.1 80 4-85 7-86 (267)
88 KOG4211 Splicing factor hnRNP- 98.2 4.1E-06 9E-11 90.6 8.3 79 5-87 9-87 (510)
89 KOG4660 Protein Mei2, essentia 98.2 1.1E-06 2.4E-11 96.1 3.5 70 5-79 74-143 (549)
90 KOG0151 Predicted splicing reg 98.1 5.1E-06 1.1E-10 93.0 6.9 81 4-84 172-255 (877)
91 KOG4210 Nuclear localization s 98.1 3.3E-06 7.1E-11 87.4 4.5 84 5-89 183-267 (285)
92 KOG1995 Conserved Zn-finger pr 97.9 2.1E-05 4.5E-10 82.6 7.7 84 4-87 64-155 (351)
93 KOG0147 Transcriptional coacti 97.8 5.7E-06 1.2E-10 90.5 0.7 83 5-88 178-260 (549)
94 KOG4206 Spliceosomal protein s 97.5 0.00028 6E-09 70.3 7.9 76 4-84 144-220 (221)
95 KOG1190 Polypyrimidine tract-b 97.5 0.00075 1.6E-08 72.2 11.3 76 6-86 297-373 (492)
96 KOG4211 Splicing factor hnRNP- 97.5 0.0002 4.4E-09 77.9 7.0 78 5-84 102-180 (510)
97 KOG2314 Translation initiation 97.4 0.00057 1.2E-08 75.5 8.8 78 4-82 56-140 (698)
98 KOG4307 RNA binding protein RB 97.3 0.00052 1.1E-08 77.3 8.2 76 6-82 867-943 (944)
99 KOG0106 Alternative splicing f 97.2 0.00024 5.1E-09 70.9 3.5 72 5-84 98-169 (216)
100 PF11608 Limkain-b1: Limkain b 97.2 0.0011 2.4E-08 57.2 7.0 70 7-86 3-77 (90)
101 KOG1457 RNA binding protein (c 97.1 0.0005 1.1E-08 68.7 4.4 65 5-73 209-273 (284)
102 KOG0129 Predicted RNA-binding 97.0 0.0017 3.7E-08 71.3 7.7 64 4-67 368-432 (520)
103 KOG1855 Predicted RNA-binding 97.0 0.00074 1.6E-08 72.6 4.9 67 4-70 229-308 (484)
104 PF08777 RRM_3: RNA binding mo 96.9 0.0013 2.9E-08 58.6 5.2 70 7-82 2-76 (105)
105 KOG0120 Splicing factor U2AF, 96.9 0.0021 4.5E-08 71.1 7.0 68 21-88 424-494 (500)
106 COG5175 MOT2 Transcriptional r 96.8 0.0027 6E-08 66.6 7.1 79 6-84 114-201 (480)
107 KOG0129 Predicted RNA-binding 96.8 0.0035 7.6E-08 68.9 7.7 64 5-69 258-327 (520)
108 KOG3152 TBP-binding protein, a 96.6 0.0019 4.2E-08 65.6 3.7 71 7-77 75-157 (278)
109 KOG0105 Alternative splicing f 96.5 0.017 3.7E-07 56.6 9.8 61 6-73 115-175 (241)
110 KOG1190 Polypyrimidine tract-b 96.5 0.0054 1.2E-07 65.9 6.8 78 4-85 412-490 (492)
111 KOG1365 RNA-binding protein Fu 96.5 0.0028 6.2E-08 67.5 4.5 79 6-85 280-361 (508)
112 KOG1548 Transcription elongati 96.4 0.011 2.5E-07 62.3 8.3 78 5-86 264-352 (382)
113 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.012 2.6E-07 46.3 5.5 53 6-65 1-53 (53)
114 KOG0128 RNA-binding protein SA 96.2 0.0034 7.3E-08 72.3 3.2 79 6-85 736-814 (881)
115 KOG1456 Heterogeneous nuclear 96.0 0.078 1.7E-06 56.8 12.0 71 12-87 128-200 (494)
116 KOG2416 Acinus (induces apopto 96.0 0.0069 1.5E-07 67.6 4.3 77 4-86 442-522 (718)
117 KOG1456 Heterogeneous nuclear 95.8 0.042 9.1E-07 58.7 9.0 78 4-86 285-363 (494)
118 KOG1365 RNA-binding protein Fu 95.8 0.023 5E-07 60.8 7.0 75 8-84 163-241 (508)
119 PF08952 DUF1866: Domain of un 95.6 0.062 1.4E-06 50.9 8.6 56 22-86 52-107 (146)
120 KOG1996 mRNA splicing factor [ 95.5 0.035 7.7E-07 57.7 7.2 67 20-86 300-367 (378)
121 KOG4307 RNA binding protein RB 94.9 0.015 3.3E-07 65.9 2.7 79 6-85 434-513 (944)
122 PF05172 Nup35_RRM: Nup53/35/4 94.7 0.15 3.2E-06 45.5 7.8 80 4-85 4-91 (100)
123 KOG0128 RNA-binding protein SA 94.5 0.0026 5.6E-08 73.2 -4.8 68 6-73 667-734 (881)
124 KOG2202 U2 snRNP splicing fact 94.4 0.02 4.3E-07 58.4 1.7 62 22-84 84-146 (260)
125 KOG0112 Large RNA-binding prot 94.3 0.045 9.7E-07 63.8 4.4 76 5-86 454-531 (975)
126 KOG2193 IGF-II mRNA-binding pr 94.0 0.035 7.5E-07 60.1 2.7 74 7-88 2-78 (584)
127 PF11767 SET_assoc: Histone ly 93.5 0.32 6.9E-06 40.3 6.8 55 17-80 11-65 (66)
128 KOG2253 U1 snRNP complex, subu 93.2 0.045 9.7E-07 62.0 2.0 70 4-82 38-107 (668)
129 PF10309 DUF2414: Protein of u 93.2 0.46 1E-05 38.9 7.3 56 5-68 4-62 (62)
130 KOG2591 c-Mpl binding protein, 93.0 0.11 2.3E-06 58.1 4.5 68 5-79 174-245 (684)
131 KOG0115 RNA-binding protein p5 92.6 0.14 3.1E-06 52.4 4.3 77 7-84 32-112 (275)
132 KOG2068 MOT2 transcription fac 92.4 0.043 9.4E-07 57.8 0.4 80 7-86 78-163 (327)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 91.9 0.32 7E-06 47.2 5.8 83 4-86 5-98 (176)
134 KOG0112 Large RNA-binding prot 91.6 0.055 1.2E-06 63.1 0.2 79 5-84 371-449 (975)
135 KOG4210 Nuclear localization s 91.6 0.12 2.5E-06 54.0 2.5 81 6-86 88-168 (285)
136 KOG4676 Splicing factor, argin 91.3 0.28 6.2E-06 52.9 5.0 78 6-84 7-87 (479)
137 PF04847 Calcipressin: Calcipr 90.4 0.69 1.5E-05 45.4 6.5 61 19-85 8-70 (184)
138 PF08675 RNA_bind: RNA binding 90.1 1.1 2.3E-05 39.1 6.5 55 6-69 9-63 (87)
139 PF07576 BRAP2: BRCA1-associat 87.9 3.9 8.4E-05 37.1 8.9 68 6-75 13-81 (110)
140 KOG4660 Protein Mei2, essentia 87.3 0.84 1.8E-05 51.2 5.1 78 8-85 390-472 (549)
141 KOG2135 Proteins containing th 86.3 0.45 9.7E-06 52.5 2.4 73 7-86 373-446 (526)
142 PF15023 DUF4523: Protein of u 85.4 3.4 7.4E-05 39.5 7.4 73 4-84 84-160 (166)
143 KOG2193 IGF-II mRNA-binding pr 82.8 0.17 3.7E-06 55.0 -2.6 78 5-86 79-157 (584)
144 KOG4285 Mitotic phosphoprotein 82.0 6.7 0.00014 41.5 8.5 73 6-86 197-270 (350)
145 PF03880 DbpA: DbpA RNA bindin 79.8 7.1 0.00015 32.4 6.5 60 15-83 10-74 (74)
146 KOG1924 RhoA GTPase effector D 77.5 23 0.0005 42.0 11.6 46 174-220 453-498 (1102)
147 KOG4574 RNA-binding protein (c 76.9 1.5 3.4E-05 51.4 2.3 72 9-86 301-374 (1007)
148 KOG0804 Cytoplasmic Zn-finger 69.1 15 0.00033 40.7 7.4 67 6-75 74-142 (493)
149 KOG2318 Uncharacterized conser 68.2 22 0.00047 40.7 8.5 82 4-85 172-307 (650)
150 PRK11634 ATP-dependent RNA hel 68.0 35 0.00075 39.6 10.5 62 15-85 496-562 (629)
151 KOG4410 5-formyltetrahydrofola 66.7 11 0.00024 39.6 5.5 58 6-69 330-395 (396)
152 KOG4454 RNA binding protein (R 58.3 2.1 4.5E-05 43.4 -1.4 68 5-73 79-150 (267)
153 smart00596 PRE_C2HC PRE_C2HC d 56.8 16 0.00035 30.7 3.8 62 21-85 2-64 (69)
154 PF07530 PRE_C2HC: Associated 52.7 25 0.00055 29.1 4.4 62 21-85 2-64 (68)
155 COG0724 RNA-binding proteins ( 52.5 15 0.00033 34.7 3.5 60 5-64 224-283 (306)
156 PF03468 XS: XS domain; Inter 48.6 19 0.00042 32.8 3.4 56 8-66 10-75 (116)
157 KOG4676 Splicing factor, argin 43.0 6.1 0.00013 43.1 -0.9 57 7-67 152-208 (479)
158 PF10567 Nab6_mRNP_bdg: RNA-re 40.6 52 0.0011 34.9 5.4 81 4-84 13-106 (309)
159 PF14555 UBA_4: UBA-like domai 37.7 72 0.0016 23.7 4.5 31 182-212 2-33 (43)
160 KOG4019 Calcineurin-mediated s 37.2 30 0.00065 34.3 2.9 74 7-86 11-90 (193)
161 KOG4483 Uncharacterized conser 36.4 84 0.0018 34.8 6.3 55 6-67 391-446 (528)
162 PF14893 PNMA: PNMA 34.7 41 0.00088 36.2 3.7 80 1-85 13-96 (331)
163 PRK11901 hypothetical protein; 33.0 1.3E+02 0.0029 32.3 7.1 61 5-70 244-306 (327)
164 KOG2295 C2H2 Zn-finger protein 31.5 9.2 0.0002 43.4 -1.8 70 6-75 231-300 (648)
165 PF11304 DUF3106: Protein of u 29.0 99 0.0022 27.8 4.7 36 503-538 39-87 (107)
166 KOG2891 Surface glycoprotein [ 28.4 41 0.00089 35.5 2.4 44 6-49 149-209 (445)
167 PF02714 DUF221: Domain of unk 28.1 56 0.0012 33.9 3.4 35 51-87 1-35 (325)
168 PF14483 Cut8_M: Cut8 dimerisa 24.1 1.4E+02 0.0031 22.1 3.9 35 167-204 2-36 (38)
169 PF11304 DUF3106: Protein of u 22.2 1.6E+02 0.0034 26.5 4.6 30 513-542 34-73 (107)
170 PF12687 DUF3801: Protein of u 20.3 2.5E+02 0.0054 28.1 6.1 55 17-73 38-95 (204)
No 1
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=255.81 Aligned_cols=181 Identities=39% Similarity=0.549 Sum_probs=149.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
++||||||||+++||+|.++|+++|.|.++++++|++||++||||||+|.+.++|.+|++.|||.+++||+|+|+|+..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccchhhhHHhhhccCCcccCcCCCCCCcccccCCCCc
Q 008851 87 KGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGESVHHQPIGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPND 166 (551)
Q Consensus 87 ~~~~r~r~~grGG~G~~~~~~~~~~~Ggp~~~G~~~~~~P~gl~~~~~a~s~ma~~lgga~~~~~~~~~glp~~~~~a~D 166 (551)
+.+++....+.+.+.. ..+++-+ ..+ ..+.+
T Consensus 99 ~~~~~~~~~~~~~p~~---------------------~~~~~~~-------------------------~~~---~~a~~ 129 (435)
T KOG0108|consen 99 KNAERSLASHNALPAE---------------------GAPYSSP-------------------------SYP---FDALK 129 (435)
T ss_pred chhHHHHhhcccCccc---------------------cccCCCC-------------------------ccc---ccccc
Confidence 6554432221110000 0000000 000 11346
Q ss_pred hhhHhhhcCChHHHHHHHHHHHHHH-hhCHHHHHHHHHhCCChHHH-HHHHHHHhCCCChhhhhcccccCCC
Q 008851 167 PLTLHLAKMSRNQLNEIMSEMKLMA-TQNKEQARQLLLAKPPLLKA-LFQAQIMLGMATPQVLQMPILRQGP 236 (551)
Q Consensus 167 ~IS~~Lakl~p~QL~eiLsqLK~l~-~~~P~~Ar~LL~~NPQLa~A-L~QA~llLgmid~~v~q~~~~~q~~ 236 (551)
.+...++++++.++++++..++... ..++..++.+|..+|+++|+ ++|++..|++.|++++-..+....-
T Consensus 130 ~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~s~~~~~~~~p~~~l~~~~~~~~ 201 (435)
T KOG0108|consen 130 GNGSGVSNEPPSQLFELLSQGANNTNKSNPTPNPSGLTIPPAIVVKNIPQSLVKLTLAKPFTALYILRPYAF 201 (435)
T ss_pred ccccccccCCccccccccchhhhhccccCCCcCccccccCchhhhccchhhhhhhhccChHhhhcccchhhh
Confidence 6778889999999999999999999 78899999999999999999 9999999999999988777765533
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=2.4e-18 Score=160.08 Aligned_cols=84 Identities=31% Similarity=0.659 Sum_probs=80.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
.+++|||+||+++++|++|+++|++||.|++|++++|++|++++|||||+|.+.++|++|++.|++..|+|+.|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008851 85 NDKG 88 (551)
Q Consensus 85 ~~~~ 88 (551)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6544
No 3
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=99.72 E-value=1.6e-18 Score=147.78 Aligned_cols=70 Identities=46% Similarity=0.641 Sum_probs=59.0
Q ss_pred CCCchhhHhhhcCChHHHHHHHHHHHHHHhhCHHHHHHHHHhCCChHHHHHHHHHHhCCCChhhhhcccc
Q 008851 163 SPNDPLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQVLQMPIL 232 (551)
Q Consensus 163 ~a~D~IS~~Lakl~p~QL~eiLsqLK~l~~~~P~~Ar~LL~~NPQLa~AL~QA~llLgmid~~v~q~~~~ 232 (551)
.+.|.|+++|++|++.||+|+|++||.|+.++|++||+||.+||||+||||||+++|||||+++++.+++
T Consensus 14 ~~~~~Is~~l~~l~~~ql~ell~~mK~l~~~~p~~ar~lL~~nPqLa~Al~qa~l~lg~vd~~v~~~~l~ 83 (84)
T PF14327_consen 14 SAPDAISQTLSSLPPEQLYELLSQMKQLAQQNPEQARQLLQQNPQLAYALFQALLLLGMVDPDVVQSILK 83 (84)
T ss_dssp -HHHHHHTTSSTSHHHHHHHHHHHHHHHHC----HHHHHHHS-THHHHHHHHHHHHTSS-SSSCHHH---
T ss_pred CcHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCCCHHHHHhhcc
Confidence 3679999999999999999999999999999999999999999999999999999999999999998875
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=6.1e-16 Score=159.81 Aligned_cols=82 Identities=32% Similarity=0.532 Sum_probs=78.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
+++|||+|||++++|++|+++|+.||.|.+|+|++|+.||++||||||+|.+.++|.+|+..|||..|+||.|+|+|+..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC
Q 008851 86 DK 87 (551)
Q Consensus 86 ~~ 87 (551)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 53
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=4.2e-15 Score=156.42 Aligned_cols=84 Identities=29% Similarity=0.461 Sum_probs=78.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEe
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING--RQLRVDF 82 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G--R~LrV~~ 82 (551)
..++|||+|||+++||++|+++|++||.|++|+|+.|+.||++||||||+|.+.++|++|++.||+..+.| +.|+|++
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999998865 7899999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
++....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 987543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.62 E-value=2.2e-15 Score=155.66 Aligned_cols=82 Identities=28% Similarity=0.538 Sum_probs=78.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||++++|++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|+|..|.|+.|+|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 53
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=2.5e-15 Score=158.07 Aligned_cols=82 Identities=28% Similarity=0.575 Sum_probs=79.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++||++|+++|+.||.|++|+|++|+.|++++|||||+|.++++|++|++.|++..|.+++|+|+++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 008851 84 EN 85 (551)
Q Consensus 84 ~~ 85 (551)
++
T Consensus 185 ~p 186 (346)
T TIGR01659 185 RP 186 (346)
T ss_pred cc
Confidence 64
No 8
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=6.6e-15 Score=149.18 Aligned_cols=90 Identities=32% Similarity=0.554 Sum_probs=82.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+-+||||+.|+++++|..|+..|+.||+|+.|+||.|+.||+++|||||||+++.+...|++..+|..|+|+.|.|++-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCC
Q 008851 84 ENDKGADRNR 93 (551)
Q Consensus 84 ~~~~~~~r~r 93 (551)
....-+.+..
T Consensus 179 RgRTvkgW~P 188 (335)
T KOG0113|consen 179 RGRTVKGWLP 188 (335)
T ss_pred cccccccccc
Confidence 7654444433
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=8.2e-15 Score=116.07 Aligned_cols=70 Identities=41% Similarity=0.766 Sum_probs=67.6
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008851 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (551)
Q Consensus 9 VFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~Lr 79 (551)
|||+|||+++++++|+++|+.||.|..+.+..+ .+++.+|||||+|.+.++|++|++.|++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6899999999999999999999999999999999986
No 10
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=2.7e-15 Score=147.97 Aligned_cols=79 Identities=29% Similarity=0.577 Sum_probs=74.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
-++||||+|+|++..|+|+++|++||+|++..++.|+.|||+||||||+|+|.+.|.+||+.-+ -.|+||+..|++|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 3689999999999999999999999999999999999999999999999999999999997644 578999999999875
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.8e-14 Score=129.87 Aligned_cols=82 Identities=29% Similarity=0.549 Sum_probs=78.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
..+++||||||.+.++||+|.++|+++|.|+.|.+-.|+.+..+.|||||||...++|+.|++.+++..++.|.|+|+|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 008851 84 EN 85 (551)
Q Consensus 84 ~~ 85 (551)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 54
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=1.4e-13 Score=153.44 Aligned_cols=82 Identities=22% Similarity=0.411 Sum_probs=78.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+||++++++++|+++|+.||.|++|+|.+|+.+|++||||||+|.+.++|.+|++.||++.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 54
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.7e-13 Score=110.17 Aligned_cols=70 Identities=40% Similarity=0.743 Sum_probs=65.6
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008851 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (551)
Q Consensus 9 VFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~Lr 79 (551)
|||+|||+++++++|+++|+.||.|..+++..+++ |+.+|+|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 99999999999999999999999999999999985
No 14
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=4.5e-15 Score=141.75 Aligned_cols=81 Identities=35% Similarity=0.714 Sum_probs=77.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
++..|||||||++.||.+|..+|++||.|++|.+++|+.||+++||||..|+|.....-|+.+|||+.|.||.|+|+...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q 008851 85 N 85 (551)
Q Consensus 85 ~ 85 (551)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 4
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=1.1e-13 Score=154.35 Aligned_cols=80 Identities=30% Similarity=0.522 Sum_probs=76.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++||||||+++++|++|+++|+.||.|++|++++|+.||++||||||+|.+.++|++|++.|||..|+||.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998543
No 16
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.9e-13 Score=131.11 Aligned_cols=84 Identities=27% Similarity=0.538 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 1 ma~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
|....+++|||||||.++.|.+|+++|.+||.|++|.|... -....||||||+|..+|+.||..-+|+.++|.+|+|
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRV 77 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRV 77 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEE
Confidence 56677899999999999999999999999999999998643 345689999999999999999999999999999999
Q ss_pred EeecCCC
Q 008851 81 DFAENDK 87 (551)
Q Consensus 81 ~~A~~~~ 87 (551)
+|+....
T Consensus 78 Efprggr 84 (241)
T KOG0105|consen 78 EFPRGGR 84 (241)
T ss_pred EeccCCC
Confidence 9998765
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.46 E-value=2.8e-13 Score=149.72 Aligned_cols=79 Identities=27% Similarity=0.572 Sum_probs=76.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 8 tVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
+|||||||+++||++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++|++.+++..|+|+.|+|.|+..+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999998643
No 18
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.3e-13 Score=135.09 Aligned_cols=82 Identities=32% Similarity=0.553 Sum_probs=79.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+.++|-|.||+.+++|++|+++|..||.|..+.|.+|++||.+||||||.|.+.++|.+||+.|||+-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 19
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=5e-13 Score=127.04 Aligned_cols=80 Identities=50% Similarity=0.842 Sum_probs=77.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++|||+||++++++++|+++|..||.|..+++..|+.+|+++|||||+|.+.++|..|++.+++..|.|+.|+|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999763
No 20
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.9e-13 Score=127.94 Aligned_cols=79 Identities=30% Similarity=0.528 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
-.++||||||+.++++.||+.+|..||+|..|.|-.. +.|||||||+|..+|+.|++.|+|..|.|..|+|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4789999999999999999999999999999988754 48999999999999999999999999999999999998
Q ss_pred CCCC
Q 008851 85 NDKG 88 (551)
Q Consensus 85 ~~~~ 88 (551)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7554
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=3.1e-13 Score=138.64 Aligned_cols=82 Identities=24% Similarity=0.482 Sum_probs=76.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
+..++|+|.||||...|-||+.+|++||+|.+|+|+++. ..+||||||+|++.+||++|-.+|||..|.||+|+|..|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 356899999999999999999999999999999999975 567999999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
+.+-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 8753
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.43 E-value=8.3e-13 Score=143.43 Aligned_cols=82 Identities=33% Similarity=0.556 Sum_probs=78.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+.+++++|+++|+.||.|..+.++.|+.||+++|||||+|.+.++|..|+..|+|..|+|+.|+|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 54
No 23
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=1e-12 Score=101.97 Aligned_cols=72 Identities=44% Similarity=0.773 Sum_probs=67.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 8 tVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
+|||+|||.++++++|+++|+.||.|.++++..++ ++++|+|||+|.+.++|..|++.+++..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7889999999999999999999999999999999874
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.41 E-value=8.5e-13 Score=141.67 Aligned_cols=80 Identities=34% Similarity=0.679 Sum_probs=77.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++|||+|||++++|++|+++|+.||.|..|.++.|+.+|+++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999874
No 25
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=8.3e-13 Score=133.40 Aligned_cols=76 Identities=25% Similarity=0.311 Sum_probs=71.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++|||+||+++++|++|+++|+.||.|++|+|+.|++ .+|||||+|.+.++|+.|+ .|+|..|.||.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998864 4799999999999999999 5999999999999999864
No 26
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1e-12 Score=101.40 Aligned_cols=71 Identities=48% Similarity=0.784 Sum_probs=67.7
Q ss_pred EecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 11 VGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 11 VGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
|+|||+++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999998889999999999999999999999999999999999874
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.40 E-value=1.1e-12 Score=145.03 Aligned_cols=81 Identities=30% Similarity=0.534 Sum_probs=77.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+||++++|+++|+++|+.||.|++|+++.| .+|+++|||||+|.+.++|.+|++.||+..|+|++|+|.+|.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4678999999999999999999999999999999999 689999999999999999999999999999999999999997
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
.+
T Consensus 363 ~k 364 (562)
T TIGR01628 363 RK 364 (562)
T ss_pred Cc
Confidence 54
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.39 E-value=1.7e-12 Score=139.29 Aligned_cols=80 Identities=30% Similarity=0.477 Sum_probs=76.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.||+++|||||+|.+.++|.+|+. |+|..|.|+.|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 57899999999999999999999999999999999999999999999999999999999995 89999999999999875
Q ss_pred C
Q 008851 85 N 85 (551)
Q Consensus 85 ~ 85 (551)
.
T Consensus 167 ~ 167 (457)
T TIGR01622 167 A 167 (457)
T ss_pred h
Confidence 4
No 29
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.2e-12 Score=120.35 Aligned_cols=83 Identities=30% Similarity=0.471 Sum_probs=79.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..+.|||.++..+++|++|.+.|+.||+|+.+.+..|+.||-.||||+|||++.+.|++|+..+||..|.|..|.|+||.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
...
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 543
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.3e-12 Score=131.21 Aligned_cols=83 Identities=33% Similarity=0.556 Sum_probs=79.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
....||||.|..+++-|+|++.|..||+|.++++++|..|+|+||||||.|.+.++|++||..+||..|++|.||..||.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
.+.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 654
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=2.1e-12 Score=137.78 Aligned_cols=77 Identities=18% Similarity=0.376 Sum_probs=72.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceeCCEEEEEEe
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDE--ETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~--e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
...+||||||.|++++++|+.+|+.||.|.+|.|+ ++|| ||||||+|.+. .++.+||..|||.+++||.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35789999999999999999999999999999999 6678 99999999977 789999999999999999999999
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 986
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.35 E-value=2.4e-12 Score=143.17 Aligned_cols=79 Identities=37% Similarity=0.644 Sum_probs=73.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~-GR~LrV~~A 83 (551)
..++|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++|++.||+++|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3689999999999999999999999999999999999 78999999999999999999999999999985 788888776
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 33
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.35 E-value=2.8e-12 Score=124.92 Aligned_cols=83 Identities=25% Similarity=0.457 Sum_probs=79.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
-.+|-|-||.+.++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+|..|+|+.|+|.+|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCC
Q 008851 86 DKG 88 (551)
Q Consensus 86 ~~~ 88 (551)
+..
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 654
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.2e-12 Score=135.34 Aligned_cols=82 Identities=33% Similarity=0.596 Sum_probs=77.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-CCEEEEEEe
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI-NGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I-~GR~LrV~~ 82 (551)
+..|.||||.||.|+.|++|..+|++.|+|-++||+.|+.+|.+||||||.|.+.++|++|++.||+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999 589998888
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
+..
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 764
No 35
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.33 E-value=1.3e-11 Score=96.29 Aligned_cols=74 Identities=50% Similarity=0.814 Sum_probs=69.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 8 tVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
+|||+|||+++++++|+++|+.||.|..+.+..++.+ +.+|+|||+|.+.++|..|++.+++..++|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988765 7799999999999999999999999999999999874
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.32 E-value=5.6e-12 Score=133.12 Aligned_cols=86 Identities=36% Similarity=0.621 Sum_probs=77.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHH-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs-~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
..+.+||.||||++.|.+|+++|+ +.|+|.+|.+.+|. .||+||||.|||+++|.+++|+++||.++++||.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 467799999999999999999995 69999999999996 6999999999999999999999999999999999999987
Q ss_pred cCCCCCCC
Q 008851 84 ENDKGADR 91 (551)
Q Consensus 84 ~~~~~~~r 91 (551)
....+..+
T Consensus 122 ~d~q~~~~ 129 (608)
T KOG4212|consen 122 HDEQRDQY 129 (608)
T ss_pred Cchhhhhh
Confidence 76544333
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.32 E-value=1e-11 Score=138.25 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=69.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREV--GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~--G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.++|||+||+++++||+|+++|+.| |.|++|+++ ++||||+|.+.++|++|++.||+.+|+|+.|+|+|+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 999999876 469999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
++...
T Consensus 305 kp~~~ 309 (578)
T TIGR01648 305 KPVDK 309 (578)
T ss_pred cCCCc
Confidence 87543
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.1e-11 Score=124.65 Aligned_cols=80 Identities=28% Similarity=0.527 Sum_probs=75.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
+++.++||||||+..++|++|++.|+.||.|.+||+.+| +||+||.|++.|.|..||..+|+.+|+|..+||.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 567899999999999999999999999999999999987 79999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
-++...
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 887544
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.30 E-value=2.6e-12 Score=123.04 Aligned_cols=81 Identities=38% Similarity=0.596 Sum_probs=78.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
....+||||||+..++|+.|+++|-+.|+|+++++.+|+.|.+.+|||||||.++|+|+-||+.||..++.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 40
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.1e-12 Score=126.74 Aligned_cols=86 Identities=30% Similarity=0.548 Sum_probs=82.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++||||+|..+++|.-|...|-.||.|++|.+..|.+++|+||||||||...|+|.+|+.++|+.++.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 008851 85 NDKGAD 90 (551)
Q Consensus 85 ~~~~~~ 90 (551)
+.+-+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 865443
No 41
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4.7e-12 Score=133.66 Aligned_cols=85 Identities=28% Similarity=0.480 Sum_probs=76.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-e--CCEEEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYE-I--NGRQLRVD 81 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~-I--~GR~LrV~ 81 (551)
+.-++|||-||..|+|+||+++|++||.|.+|.|++||.||.++|||||.|.+.++|.+|+..||+.+ | ....|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 35679999999999999999999999999999999999999999999999999999999999998854 4 34679999
Q ss_pred eecCCCCC
Q 008851 82 FAENDKGA 89 (551)
Q Consensus 82 ~A~~~~~~ 89 (551)
+|+..+.+
T Consensus 113 ~Ad~E~er 120 (510)
T KOG0144|consen 113 YADGERER 120 (510)
T ss_pred ccchhhhc
Confidence 99876543
No 42
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.6e-11 Score=108.49 Aligned_cols=79 Identities=25% Similarity=0.505 Sum_probs=73.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..+.+||.|||+++|.|+..++|.+||.|+.++|-.+++ .+|-|||.|+|..+|++||+.|.|+.+.++.|.|-+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 468899999999999999999999999999999986654 48999999999999999999999999999999999977
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
..
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 54
No 43
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.27 E-value=2.1e-11 Score=121.90 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=70.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
...+|||+||++.+||++|+++|+.||.|.+|+|++|. +.+|||||+|++.+.++.|+ .|+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 56899999999999999999999999999999999884 44689999999999999999 799999999999998876
Q ss_pred C
Q 008851 85 N 85 (551)
Q Consensus 85 ~ 85 (551)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.25 E-value=2.5e-11 Score=132.66 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=69.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCEEEEEEe
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL--QGYEINGRQLRVDF 82 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~L--ng~~I~GR~LrV~~ 82 (551)
++++|||+|||++++|++|+++|+.||.|.+|+++.+ ||||||+|++.++|++|++.+ ++..|+|+.|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5799999999999999999999999999999999854 689999999999999999864 77899999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 9754
No 45
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.3e-11 Score=121.91 Aligned_cols=82 Identities=27% Similarity=0.529 Sum_probs=78.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.+.+.|.-||..+|+||++.+|...|+|++|++++|+-||.+.|||||.|-+++||++|+..|||..+..+.|+|.||++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 45688889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 008851 86 DK 87 (551)
Q Consensus 86 ~~ 87 (551)
..
T Consensus 121 Ss 122 (360)
T KOG0145|consen 121 SS 122 (360)
T ss_pred Ch
Confidence 54
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.22 E-value=4.5e-11 Score=130.62 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=72.6
Q ss_pred CCcEEEEecCCC-CCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 5 QHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~-d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
++++|||+||++ .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|..|++.||+..|.|+.|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 678999999998 69999999999999999999999874 799999999999999999999999999999999998
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
+...
T Consensus 349 ~~~~ 352 (481)
T TIGR01649 349 KQQN 352 (481)
T ss_pred cccc
Confidence 7543
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.6e-11 Score=130.95 Aligned_cols=83 Identities=35% Similarity=0.554 Sum_probs=77.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-ceeCCEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL-----QG-YEINGRQL 78 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~L-----ng-~~I~GR~L 78 (551)
..++|||+||||++|||+|+..|++||.|.++.|+.|+.||+++|+|||.|.+..+|.+||... .| +.|+||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3589999999999999999999999999999999999999999999999999999999999876 23 67899999
Q ss_pred EEEeecCCC
Q 008851 79 RVDFAENDK 87 (551)
Q Consensus 79 rV~~A~~~~ 87 (551)
+|..|..+.
T Consensus 371 kv~~Av~Rk 379 (678)
T KOG0127|consen 371 KVTLAVTRK 379 (678)
T ss_pred eeeeccchH
Confidence 999998654
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.3e-11 Score=130.47 Aligned_cols=87 Identities=29% Similarity=0.531 Sum_probs=77.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCC--EEEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY-EING--RQLRVD 81 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~-~I~G--R~LrV~ 81 (551)
+++++|||-|+..++|+|++++|++||.|++|+|.+|.+ |.+||||||.|.+.|.|..|++.||+. ++.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 367899999999999999999999999999999999975 999999999999999999999999985 4555 579999
Q ss_pred eecCCCCCCCC
Q 008851 82 FAENDKGADRN 92 (551)
Q Consensus 82 ~A~~~~~~~r~ 92 (551)
||+..+.+..+
T Consensus 202 FADtqkdk~~~ 212 (510)
T KOG0144|consen 202 FADTQKDKDGK 212 (510)
T ss_pred ecccCCCchHH
Confidence 99987665443
No 49
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=1.6e-10 Score=94.34 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=56.7
Q ss_pred HHHHHHHHH----cCCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 20 EEQLIEICR----EVGPVVSFR-LVIDRET--GKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 20 EEeLre~Fs----~~G~V~~vr-Lv~Dr~T--GksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
+++|+++|+ .||.|.++. ++.|+.+ ++++|||||+|.+.++|.+|++.|||..++||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999995 8888877 999999999999999999999999999999999986
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=2.8e-10 Score=114.18 Aligned_cols=82 Identities=33% Similarity=0.537 Sum_probs=78.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||-||..|++|.-|..+|+.||.|..|++++|..|.++||||||...+.++|..|+..|||+.+++|.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 53
No 51
>PF14304 CSTF_C: Transcription termination and cleavage factor C-terminal; PDB: 2J8P_A.
Probab=99.10 E-value=8.5e-11 Score=89.35 Aligned_cols=41 Identities=61% Similarity=0.950 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcCHHHHhcCChHHHHHHHHHHHHHHhhhc
Q 008851 508 DVESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQM 548 (551)
Q Consensus 508 ~~~~~~~~qv~~l~~~q~~~lp~~q~~~v~~~~~~~~~~~~ 548 (551)
..|.+||+|||+||+|||+.||||+|.+|..||+++.++.|
T Consensus 5 ~~q~aLl~QVL~Lt~eQI~~LPp~qR~~I~~Lr~ql~~~~~ 45 (46)
T PF14304_consen 5 PEQAALLMQVLQLTPEQINALPPDQRQQILQLRQQLMRGEM 45 (46)
T ss_dssp HTHHHHHHHHHTS-HHHHHTS-HHHHTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 46889999999999999999999999999999999998755
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=5.7e-11 Score=123.39 Aligned_cols=77 Identities=31% Similarity=0.556 Sum_probs=74.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
|+||||.|.|+..|+.|+..|..||+|+++.+.+|+.|+++||||||||+-.|.|.-|++.+||..++||.|+|.+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999853
No 53
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.4e-10 Score=120.34 Aligned_cols=83 Identities=28% Similarity=0.476 Sum_probs=80.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
.++.++|||..|..-+++|+|.-+|+.||.|++|.+++|+.||.+..||||||++.++|+.|+-.|++..|+.|+|.|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
+.+
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 875
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.08 E-value=1.6e-10 Score=117.49 Aligned_cols=72 Identities=35% Similarity=0.659 Sum_probs=68.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
.++||||||.++++.+|+.+|++||+|.+|.|+ |.||||..+|...++.||++||+++|+|..|+|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 469999999999999999999999999999999 569999999999999999999999999999999999876
No 55
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=3.9e-10 Score=119.78 Aligned_cols=79 Identities=25% Similarity=0.447 Sum_probs=71.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
-+.|||+||+.++|||.|++.|..||.|.+|+.++| ||||.|.++++|.+|++.+|+++|+|..|.|.+|++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 478999999999999999999999999999987744 999999999999999999999999999999999998
Q ss_pred CCCCCCC
Q 008851 86 DKGADRN 92 (551)
Q Consensus 86 ~~~~~r~ 92 (551)
...++..
T Consensus 331 ~~k~k~~ 337 (506)
T KOG0117|consen 331 VDKKKKE 337 (506)
T ss_pred hhhhccc
Confidence 6544333
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.07 E-value=6.5e-10 Score=86.40 Aligned_cols=56 Identities=30% Similarity=0.612 Sum_probs=50.9
Q ss_pred HHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 23 LIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 23 Lre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
|+++|++||.|.++.+..+. +++|||+|.+.++|.+|++.||+..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987543 699999999999999999999999999999999986
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=8.4e-10 Score=119.54 Aligned_cols=82 Identities=24% Similarity=0.509 Sum_probs=75.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+..+|.|+||||.+.+.+|+.+|+.||.|++|.|.+.++ |+..|||||.|.+..+|..|++.+|+.+|+||+|-|+||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 467899999999999999999999999999999998776 5555999999999999999999999999999999999997
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
...
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 543
No 58
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.00 E-value=3.3e-10 Score=117.81 Aligned_cols=87 Identities=23% Similarity=0.433 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 1 ma~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
++..+.+++|||+|+|+++||.|++.|++||+|.+|.+++|+.|++++||+||+|.+.+.+.+++. ...+.|+||.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 355688999999999999999999999999999999999999999999999999999888887774 4557899999999
Q ss_pred EeecCCCC
Q 008851 81 DFAENDKG 88 (551)
Q Consensus 81 ~~A~~~~~ 88 (551)
+.|.++..
T Consensus 80 k~av~r~~ 87 (311)
T KOG4205|consen 80 KRAVSRED 87 (311)
T ss_pred eeccCccc
Confidence 99987653
No 59
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.00 E-value=2.2e-09 Score=115.51 Aligned_cols=83 Identities=28% Similarity=0.446 Sum_probs=70.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
...|||+|||.++++++|+++|..||.|+..+|......++..+||||+|.+.+.++.||.. +-..|++++|.|+..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999987765433456569999999999999999975 47789999999999877
Q ss_pred CCCC
Q 008851 86 DKGA 89 (551)
Q Consensus 86 ~~~~ 89 (551)
..+.
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5443
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=6.1e-10 Score=112.13 Aligned_cols=86 Identities=22% Similarity=0.498 Sum_probs=81.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 2 a~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
+.++.|.|||-.||.+..+.||..+|-.||.|++.++..||.|..+|+||||.|++...++.||..+||+.|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 008851 82 FAENDK 87 (551)
Q Consensus 82 ~A~~~~ 87 (551)
+.+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 977654
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.96 E-value=7.4e-10 Score=120.15 Aligned_cols=78 Identities=33% Similarity=0.659 Sum_probs=75.1
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 9 VFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
+|||||.++++|++|+.+|+.||.|..|.+..|.+||.+||||||+|.+.++|.+|++.|||++|-||.|+|..-...
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999887654
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.92 E-value=1.4e-09 Score=104.41 Aligned_cols=82 Identities=28% Similarity=0.502 Sum_probs=76.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSF-RLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~v-rLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+..+|||||.++++|..|.++|+.||.+... ++++|.+||.++|||||.|.+.+.+.+|+..++|..++.|+++|+++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 4679999999999999999999999998764 889999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 643
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.88 E-value=4.6e-09 Score=102.59 Aligned_cols=81 Identities=30% Similarity=0.532 Sum_probs=76.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREV-GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~-G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
...+||+.+|....|.++..+|++| |.|..+++-+.+.||.+||||||||++.+.|+-|-+.||++-+.|+.|.|.+..
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4568999999999999999999998 788889998999999999999999999999999999999999999999999988
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
++
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 76
No 64
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.85 E-value=1.1e-08 Score=111.43 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=70.8
Q ss_pred CCCcEEEEecCCCCC----------CHHHHHHHHHcCCCeeEEEEeec---CCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 008851 4 SQHRCVFVGNIPYDA----------TEEQLIEICREVGPVVSFRLVID---RETGKPKGYGFCEYKDEETALSARRNLQG 70 (551)
Q Consensus 4 ~~srtVFVGNLP~d~----------TEEeLre~Fs~~G~V~~vrLv~D---r~TGksKGyAFVEF~d~e~A~sAi~~Lng 70 (551)
.+.++|+|.|+.+.. ..++|+++|++||.|+.|.|.++ ..++..+||+||+|.+.++|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 357889999996421 13678999999999999999865 34567789999999999999999999999
Q ss_pred ceeCCEEEEEEeecCC
Q 008851 71 YEINGRQLRVDFAEND 86 (551)
Q Consensus 71 ~~I~GR~LrV~~A~~~ 86 (551)
..|+|+.|.|.|....
T Consensus 487 r~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 487 RKFNDRVVVAAFYGED 502 (509)
T ss_pred CEECCeEEEEEEeCHH
Confidence 9999999999998754
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=5.6e-09 Score=108.80 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=77.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
-++|||..+..|.+|++|+.+|+.||+|++|.+-+++.++.+|||||+||.+......|+..+|-+.++|..|||..+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred CC
Q 008851 86 DK 87 (551)
Q Consensus 86 ~~ 87 (551)
..
T Consensus 290 PP 291 (544)
T KOG0124|consen 290 PP 291 (544)
T ss_pred CC
Confidence 43
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.78 E-value=1.8e-08 Score=99.63 Aligned_cols=83 Identities=23% Similarity=0.507 Sum_probs=75.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHH----HHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 008851 2 ASSQHRCVFVGNIPYDATEEQLIE----ICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ 77 (551)
Q Consensus 2 a~~~srtVFVGNLP~d~TEEeLre----~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~ 77 (551)
+..+..+|||.||+..+..++|++ +|++||.|.+|... .|.+.+|-|||.|.+.+.|-.|++.|+|+.+.|+.
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 344566999999999999998887 99999999999876 47899999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 008851 78 LRVDFAENDK 87 (551)
Q Consensus 78 LrV~~A~~~~ 87 (551)
++|.||+.+.
T Consensus 82 mriqyA~s~s 91 (221)
T KOG4206|consen 82 MRIQYAKSDS 91 (221)
T ss_pred hheecccCcc
Confidence 9999998754
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=4.2e-09 Score=106.19 Aligned_cols=83 Identities=24% Similarity=0.446 Sum_probs=74.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-C--CEEEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI-N--GRQLRVD 81 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I-~--GR~LrV~ 81 (551)
+++++|||-|...-.|||++++|..||.|.+|.+.+..+ |.+|||+||.|.+..+|+.||..|||... - ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 578999999999999999999999999999999998875 99999999999999999999999998643 3 3569999
Q ss_pred eecCCCC
Q 008851 82 FAENDKG 88 (551)
Q Consensus 82 ~A~~~~~ 88 (551)
|++.++.
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9987654
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.76 E-value=8e-09 Score=105.25 Aligned_cols=76 Identities=28% Similarity=0.488 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
.+.+++||||.+.++..||+..|++||+|++|.|+ |+|+||.|.-.++|..|++.|++.+|.|++++|.++.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 57899999999999999999999999999999998 5699999999999999999999999999999999998
Q ss_pred CCCC
Q 008851 85 NDKG 88 (551)
Q Consensus 85 ~~~~ 88 (551)
++-+
T Consensus 149 srlr 152 (346)
T KOG0109|consen 149 SRLR 152 (346)
T ss_pred cccc
Confidence 7543
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.76 E-value=1.3e-08 Score=108.05 Aligned_cols=76 Identities=28% Similarity=0.486 Sum_probs=70.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
....|+|||+|||+++||..|++-|..||.|.+..|+ +.|+++| .|.|.+.++|++||+.+++..++||.|+|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3467899999999999999999999999999999985 4689988 7899999999999999999999999999987
Q ss_pred e
Q 008851 83 A 83 (551)
Q Consensus 83 A 83 (551)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 4
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.3e-08 Score=106.62 Aligned_cols=78 Identities=29% Similarity=0.564 Sum_probs=72.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
..|||.||+.++|.++|+++|+.||.|++|++..|.+ | +||| ||+|+++++|.+|++.+||..+.|++|.|.....+
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 4499999999999999999999999999999999974 5 9999 99999999999999999999999999999888764
Q ss_pred C
Q 008851 87 K 87 (551)
Q Consensus 87 ~ 87 (551)
.
T Consensus 154 ~ 154 (369)
T KOG0123|consen 154 E 154 (369)
T ss_pred h
Confidence 4
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.71 E-value=3.6e-08 Score=107.36 Aligned_cols=82 Identities=22% Similarity=0.390 Sum_probs=77.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
++.+||.+|...+...+|+.+|++||.|+..+++.+-.+-..++||||++.+.++|.+||..||..+|.||.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 57899999999999999999999999999999999888888899999999999999999999999999999999999986
Q ss_pred CC
Q 008851 86 DK 87 (551)
Q Consensus 86 ~~ 87 (551)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 43
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.71 E-value=2.2e-08 Score=104.30 Aligned_cols=82 Identities=26% Similarity=0.511 Sum_probs=76.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++||||+|+.+++|+++++.|.+||.|.++.+++|+++.+++||+||.|.+++.+++++. ..-+.|+|+.+.|+.|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 5689999999999999999999999999999999999999999999999999999998884 567899999999999998
Q ss_pred CCC
Q 008851 86 DKG 88 (551)
Q Consensus 86 ~~~ 88 (551)
+..
T Consensus 176 k~~ 178 (311)
T KOG4205|consen 176 KEV 178 (311)
T ss_pred hhh
Confidence 654
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.67 E-value=4.2e-08 Score=110.03 Aligned_cols=76 Identities=24% Similarity=0.456 Sum_probs=71.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
++|||||.|+..++|.+|..+|+.||+|.+|.++-. +|||||......+|++|+.+|+++.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999998743 79999999999999999999999999999999999986
Q ss_pred CC
Q 008851 86 DK 87 (551)
Q Consensus 86 ~~ 87 (551)
..
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 43
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=1.7e-08 Score=112.32 Aligned_cols=82 Identities=27% Similarity=0.499 Sum_probs=76.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++|+|.|||+.++-.+++.+|..||.|++|+|......+.++|||||+|-+.++|.+|++.|....+.||+|.++||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 46899999999999999999999999999999987766778899999999999999999999999999999999999987
Q ss_pred CC
Q 008851 86 DK 87 (551)
Q Consensus 86 ~~ 87 (551)
+.
T Consensus 693 d~ 694 (725)
T KOG0110|consen 693 DN 694 (725)
T ss_pred ch
Confidence 54
No 75
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=7.3e-08 Score=102.78 Aligned_cols=75 Identities=27% Similarity=0.496 Sum_probs=70.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
..+||| .++||..|+++|+.+|+|+++++.+|- | +-|||||.|.+.++|++|++.+|...|.|+.|+|-|+..+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 6 9999999999999999999999999999999999998765
Q ss_pred C
Q 008851 87 K 87 (551)
Q Consensus 87 ~ 87 (551)
.
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 4
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=5.2e-08 Score=96.64 Aligned_cols=73 Identities=29% Similarity=0.580 Sum_probs=67.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
..||||+|++.+.+++|+++|.+||.+.++.++ .||+||+|.|..+|..|+..|++..|.|.++.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999886 689999999999999999999999999998999998864
Q ss_pred C
Q 008851 87 K 87 (551)
Q Consensus 87 ~ 87 (551)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=1.1e-07 Score=106.08 Aligned_cols=78 Identities=29% Similarity=0.562 Sum_probs=70.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETG---KPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TG---ksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
+++||.||+|+++.++|..+|+.+|.|.++.|...++.. .+.|||||+|.+.++|.+|++.|+|..|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887655321 24499999999999999999999999999999999999
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 78
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=1.6e-07 Score=97.72 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=66.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH-hCCceeCCEEEEEEeec
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN-LQGYEINGRQLRVDFAE 84 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~-Lng~~I~GR~LrV~~A~ 84 (551)
.++||||+|-..++|.+|+++|.+||+|+++++... +|||||+|.+.+.|+.|.+. ++...|+|++|+|.|..
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 578999999999999999999999999999998754 57999999999999988875 46678899999999988
Q ss_pred C
Q 008851 85 N 85 (551)
Q Consensus 85 ~ 85 (551)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=2.3e-07 Score=93.75 Aligned_cols=83 Identities=22% Similarity=0.429 Sum_probs=76.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
...+|+|.||++.+++++|+++|..||.++.+.+.+|+ .|++.|+|-|.|...++|..|++.++++.++|+.+++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999999999999999997 69999999999999999999999999999999999999887
Q ss_pred CCCC
Q 008851 85 NDKG 88 (551)
Q Consensus 85 ~~~~ 88 (551)
....
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 6543
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.56 E-value=1.2e-07 Score=95.33 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=77.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
-+.+.+||||+.+.+|.+++..+|+.||.|..+.+..|+.+|.+|||+||+|.+.+.++.+++ |++..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 357889999999999999999999999999999999999999999999999999999999998 9999999999999988
Q ss_pred cCC
Q 008851 84 END 86 (551)
Q Consensus 84 ~~~ 86 (551)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 754
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.52 E-value=6e-08 Score=97.44 Aligned_cols=82 Identities=22% Similarity=0.476 Sum_probs=76.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
.+.+||+|.|--+++++.|.+.|.+|-.....++++|+.||+++||+||.|.|..++..|++.++|..++.|.|+...+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
.+
T Consensus 269 wk 270 (290)
T KOG0226|consen 269 WK 270 (290)
T ss_pred HH
Confidence 43
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.45 E-value=5.9e-07 Score=93.55 Aligned_cols=84 Identities=29% Similarity=0.482 Sum_probs=75.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVS--------FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~--------vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~ 74 (551)
...++.|||.|||.++|.+++.++|++||-|.. |+|.+|.. |+.||=|.|.|...+.+.-|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445678999999999999999999999998753 77877765 999999999999999999999999999999
Q ss_pred CEEEEEEeecCCC
Q 008851 75 GRQLRVDFAENDK 87 (551)
Q Consensus 75 GR~LrV~~A~~~~ 87 (551)
|+.|+|+.|.-..
T Consensus 210 g~~~rVerAkfq~ 222 (382)
T KOG1548|consen 210 GKKLRVERAKFQM 222 (382)
T ss_pred CcEEEEehhhhhh
Confidence 9999999998543
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.41 E-value=1.2e-06 Score=86.81 Aligned_cols=88 Identities=20% Similarity=0.354 Sum_probs=72.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVID-RETGKPKGYGFCEYKDEETALSARRNLQGYEIN---GRQLRV 80 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~D-r~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~---GR~LrV 80 (551)
.-+++||.+||.|+...||+.+|+.|-..+.+.|.+. +.....+-+||+.|.+..+|.+|+..|||+.|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3689999999999999999999999977777777643 222233579999999999999999999999995 788999
Q ss_pred EeecCCCCCCCC
Q 008851 81 DFAENDKGADRN 92 (551)
Q Consensus 81 ~~A~~~~~~~r~ 92 (551)
++|+...+..|+
T Consensus 113 ElAKSNtK~kr~ 124 (284)
T KOG1457|consen 113 ELAKSNTKRKRR 124 (284)
T ss_pred eehhcCcccccC
Confidence 999976554433
No 84
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.38 E-value=8.4e-06 Score=85.20 Aligned_cols=77 Identities=21% Similarity=0.416 Sum_probs=66.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVG--PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G--~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..++|||||-|++|+++|.+.+...| .+.++++..++.+|.+||||+|...+....+..++.|...+|+|..-.|--
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 45799999999999999999988766 567778888899999999999999999999999999999999887544433
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.23 E-value=8.5e-06 Score=71.78 Aligned_cols=79 Identities=27% Similarity=0.394 Sum_probs=69.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHHc--CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CEEEEE
Q 008851 7 RCVFVGNIPYDATEEQLIEICRE--VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN----GRQLRV 80 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~--~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~----GR~LrV 80 (551)
++|-|+|||-..|.++|.+++.. .|....+-+..|..++.+.|||||.|.+.+.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998865 467778889999999999999999999999999999999998774 566888
Q ss_pred EeecC
Q 008851 81 DFAEN 85 (551)
Q Consensus 81 ~~A~~ 85 (551)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=7.7e-07 Score=97.57 Aligned_cols=83 Identities=36% Similarity=0.606 Sum_probs=78.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
...++||++||...++.++++++..||.+..++++.|..+|.+|||||+||.|......|+..|||..++++.|.|..|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
.+.
T Consensus 368 ~g~ 370 (500)
T KOG0120|consen 368 VGA 370 (500)
T ss_pred ccc
Confidence 654
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.20 E-value=5.6e-07 Score=89.02 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=73.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
..+++|||+|+-..++||.|.++|-+.|+|+.+.|..+++ ++.| ||||+|.++....-|+..+||..+.++.+.|.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4578999999999999999999999999999999998875 7777 9999999999999999999999999999998886
Q ss_pred cC
Q 008851 84 EN 85 (551)
Q Consensus 84 ~~ 85 (551)
..
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 54
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.18 E-value=4.1e-06 Score=90.65 Aligned_cols=79 Identities=22% Similarity=0.401 Sum_probs=67.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
....|-+++|||++|++||.+||+.|+ |.++.+ .+++||..|-|||||.+++++++|++ .+...+..|.|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 456788899999999999999999997 777554 45689999999999999999999997 46678889999998886
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
...
T Consensus 85 ~~e 87 (510)
T KOG4211|consen 85 GAE 87 (510)
T ss_pred Ccc
Confidence 543
No 89
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=1.1e-06 Score=96.07 Aligned_cols=70 Identities=26% Similarity=0.420 Sum_probs=64.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~Lr 79 (551)
..++|+|-|||..+++++|+++|+.||+|++++. |-..+|.+||+|.|..+|+.|++.|++.+|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4688999999999999999999999999999764 455589999999999999999999999999999887
No 90
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.09 E-value=5.1e-06 Score=92.97 Aligned_cols=81 Identities=22% Similarity=0.450 Sum_probs=73.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDR---ETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr---~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
+..+.+||+||+..++|+.|-..|..||+|..++|++.+ +..+.+-||||.|.+..+|++|++.|+|..+.++.+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 346789999999999999999999999999999998754 45566789999999999999999999999999999999
Q ss_pred Eeec
Q 008851 81 DFAE 84 (551)
Q Consensus 81 ~~A~ 84 (551)
-|++
T Consensus 252 gWgk 255 (877)
T KOG0151|consen 252 GWGK 255 (877)
T ss_pred cccc
Confidence 9985
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.07 E-value=3.3e-06 Score=87.38 Aligned_cols=84 Identities=27% Similarity=0.485 Sum_probs=75.8
Q ss_pred CCcEEE-EecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 5 QHRCVF-VGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 5 ~srtVF-VGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++| |+++++++++++|+.+|..+|.|..+++..++.+|.++|||||+|.+...+..++.. ....+.++.+++++.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345566 999999999999999999999999999999999999999999999999999999977 788999999999998
Q ss_pred cCCCCC
Q 008851 84 ENDKGA 89 (551)
Q Consensus 84 ~~~~~~ 89 (551)
......
T Consensus 262 ~~~~~~ 267 (285)
T KOG4210|consen 262 EPRPKS 267 (285)
T ss_pred CCCccc
Confidence 875443
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.94 E-value=2.1e-05 Score=82.58 Aligned_cols=84 Identities=26% Similarity=0.436 Sum_probs=77.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVS--------FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING 75 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~--------vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G 75 (551)
...-+|||-+|+..+++..|.++|.++|.|.. |.|-+|++|+++||-|.|.|.|...|+.|+..+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35678999999999999999999999998853 6788899999999999999999999999999999999999
Q ss_pred EEEEEEeecCCC
Q 008851 76 RQLRVDFAENDK 87 (551)
Q Consensus 76 R~LrV~~A~~~~ 87 (551)
..|+|.+|....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999998654
No 93
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.80 E-value=5.7e-06 Score=90.52 Aligned_cols=83 Identities=28% Similarity=0.430 Sum_probs=75.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+.++||+--|.-.+++.+|++||+.+|.|.+|+++.|+.++++||.|||||.|.+....|+ .|.|..+.|-+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 4577888888899999999999999999999999999999999999999999999999999 799999999999999876
Q ss_pred CCCC
Q 008851 85 NDKG 88 (551)
Q Consensus 85 ~~~~ 88 (551)
..++
T Consensus 257 aekn 260 (549)
T KOG0147|consen 257 AEKN 260 (549)
T ss_pred HHHH
Confidence 5443
No 94
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.52 E-value=0.00028 Score=70.32 Aligned_cols=76 Identities=26% Similarity=0.528 Sum_probs=68.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEe
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~-GR~LrV~~ 82 (551)
++...+|+.|||.+++.+.+..+|++|...++++++..+ ++.|||||.+...+..|...+.+..|. ...++|.+
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 467899999999999999999999999999999998654 789999999999999999999998886 77788887
Q ss_pred ec
Q 008851 83 AE 84 (551)
Q Consensus 83 A~ 84 (551)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 65
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.51 E-value=0.00075 Score=72.25 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=68.4
Q ss_pred CcEEEEecCCC-CCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 6 HRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 6 srtVFVGNLP~-d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
.+.|.|.||.. .+|++.|.-+|+-||.|.+|+|.+.+ +--|.|.|.|...|+-|++.|+|+.+.|++|||.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 47788888865 58899999999999999999999875 4678999999999999999999999999999999998
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.49 E-value=0.0002 Score=77.86 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=65.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~-vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...+|-+++|||.|||++|.+||+..--|.. +.++.|+ .+++.|-|||.|++.+.|+.|+.. |...|+.|-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4567999999999999999999998755544 5567776 488999999999999999999964 556788888998887
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 5
No 97
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00057 Score=75.50 Aligned_cols=78 Identities=27% Similarity=0.429 Sum_probs=64.7
Q ss_pred CCCcEEEEecCCCCCCH------HHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CE
Q 008851 4 SQHRCVFVGNIPYDATE------EQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GR 76 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TE------EeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~-GR 76 (551)
.-+.+|+|-|+|.--.. .-|.++|+++|+|+.+.+..|.++| .+||.|+||.+..+|+.|++.|||+.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34678999999975432 2477889999999999999998755 8999999999999999999999999885 45
Q ss_pred EEEEEe
Q 008851 77 QLRVDF 82 (551)
Q Consensus 77 ~LrV~~ 82 (551)
++.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 566654
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.35 E-value=0.00052 Score=77.26 Aligned_cols=76 Identities=25% Similarity=0.470 Sum_probs=66.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~-vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
.++|-+.|+|++++-+||.+||..|-.+-. |++.+. +.|+..|-|.|.|++.++|.+|...|++..|..|++++.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 347889999999999999999999987644 444444 5699999999999999999999999999999999998875
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.00024 Score=70.92 Aligned_cols=72 Identities=25% Similarity=0.431 Sum_probs=63.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..+.++|.++..++.+.+|.++|+.+|.+....+ ..+++||+|...+++.+|+..|++..+.|+.|++...-
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 4678999999999999999999999999855443 26799999999999999999999999999999995543
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.22 E-value=0.0011 Score=57.25 Aligned_cols=70 Identities=20% Similarity=0.470 Sum_probs=48.0
Q ss_pred cEEEEecCCCCCCHHHH----HHHHHcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 7 RCVFVGNIPYDATEEQL----IEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeL----re~Fs~~G-~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
..|||.|||.+.+...| +.++..|| .|.++. .+.|+|.|.+.+.|.+|.+.|+|..+-|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46899999999997664 55556776 565552 4789999999999999999999999999999999
Q ss_pred eecCC
Q 008851 82 FAEND 86 (551)
Q Consensus 82 ~A~~~ 86 (551)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98543
No 101
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.11 E-value=0.0005 Score=68.71 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=53.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
-+.++||.||..+++|++|+.+|+.|-....++|.. ...-.+||++|++.+.|..|+..|.|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 356899999999999999999999998777666642 12245899999999999999988887655
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0017 Score=71.27 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=60.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHH-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 67 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs-~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~ 67 (551)
++.+|||||+||.-++.++|..+|. -||.|+.+-|-.|++-+-+||-|-|.|.+.....+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3689999999999999999999998 599999999999988899999999999999999999974
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.00 E-value=0.00074 Score=72.60 Aligned_cols=67 Identities=33% Similarity=0.468 Sum_probs=57.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeec---CC--CCCc--------ceEEEEEeCCHHHHHHHHHHhCC
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVID---RE--TGKP--------KGYGFCEYKDEETALSARRNLQG 70 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~D---r~--TGks--------KGyAFVEF~d~e~A~sAi~~Lng 70 (551)
-++++|.+-|||.+-.-|-|.++|+.||.|+.|+|+.. ++ .|.. +-||||||...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999865 22 2222 45899999999999999998864
No 104
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.94 E-value=0.0013 Score=58.59 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=43.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-----ceeCCEEEEEE
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG-----YEINGRQLRVD 81 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng-----~~I~GR~LrV~ 81 (551)
+.|+|.++..+++.++|+++|+.||.|..|.+... -..|||.|.+.+.|+.|+..+.. ..|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999887642 23689999999999999987643 35566555555
Q ss_pred e
Q 008851 82 F 82 (551)
Q Consensus 82 ~ 82 (551)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 105
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.86 E-value=0.0021 Score=71.14 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCCCC
Q 008851 21 EQLIEICREVGPVVSFRLVIDRE---TGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKG 88 (551)
Q Consensus 21 EeLre~Fs~~G~V~~vrLv~Dr~---TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~~~ 88 (551)
|+++.-+++||.|..|.+..+.. -.-..|..||||.+.++|++|.+.|+|.+++||.+...|..+++.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 34556677899999999987722 223357789999999999999999999999999999999877654
No 106
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.82 E-value=0.0027 Score=66.65 Aligned_cols=79 Identities=19% Similarity=0.320 Sum_probs=61.4
Q ss_pred CcEEEEecCCCCCCHHH----H--HHHHHcCCCeeEEEEeecCCC-CCcce--EEEEEeCCHHHHHHHHHHhCCceeCCE
Q 008851 6 HRCVFVGNIPYDATEEQ----L--IEICREVGPVVSFRLVIDRET-GKPKG--YGFCEYKDEETALSARRNLQGYEINGR 76 (551)
Q Consensus 6 srtVFVGNLP~d~TEEe----L--re~Fs~~G~V~~vrLv~Dr~T-GksKG--yAFVEF~d~e~A~sAi~~Lng~~I~GR 76 (551)
..-|||-+|+..+..|+ | .++|.+||.|..|.+-+.-.. ....+ -.||.|...|+|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999998877666 2 678999999999877543200 11112 239999999999999999999999999
Q ss_pred EEEEEeec
Q 008851 77 QLRVDFAE 84 (551)
Q Consensus 77 ~LrV~~A~ 84 (551)
.|+..|..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99999865
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0035 Score=68.87 Aligned_cols=64 Identities=31% Similarity=0.433 Sum_probs=48.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEee-cC--CCCCcce---EEEEEeCCHHHHHHHHHHhC
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVI-DR--ETGKPKG---YGFCEYKDEETALSARRNLQ 69 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~-Dr--~TGksKG---yAFVEF~d~e~A~sAi~~Ln 69 (551)
-+++||||+||++++|++|...|..||.+.- .+.. .. .---++| |+|..|+++..+.+-+..+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 3789999999999999999999999997642 2221 11 1123467 99999999998887766553
No 108
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.56 E-value=0.0019 Score=65.63 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=60.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHHHHhCCceeC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRET--------GKPKG----YGFCEYKDEETALSARRNLQGYEIN 74 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~T--------GksKG----yAFVEF~d~e~A~sAi~~Lng~~I~ 74 (551)
-+||+++||..++-.-|+++|+.||.|-.|.+-....+ |+.++ -|+|||.+...|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999998887655444 33333 3679999999999999999999998
Q ss_pred CEE
Q 008851 75 GRQ 77 (551)
Q Consensus 75 GR~ 77 (551)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 865
No 109
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.52 E-value=0.017 Score=56.61 Aligned_cols=61 Identities=28% Similarity=0.336 Sum_probs=55.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
..+|.|.+||...+|.+|+++..+-|.|+...+.+| |++.|+|...|+.+-|+++|+...+
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 467999999999999999999999999999988776 5899999999999999999987665
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.51 E-value=0.0054 Score=65.88 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=65.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EEEEEe
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR-QLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR-~LrV~~ 82 (551)
+++.++.+.|||.+++||+|+..|..-|..++....+ ++.+-++++.+.+.|+|..|+-.+|++.+++. .|||.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 4677899999999999999999999887665543332 44567999999999999999999999998755 899999
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 875
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.48 E-value=0.0028 Score=67.48 Aligned_cols=79 Identities=22% Similarity=0.401 Sum_probs=67.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCe-eE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPV-VS--FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V-~~--vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+|-+++|||+++.|+|-+||..|-.- +. |.++.+. -|++.|-|||+|.+.|+|..|....+++...+|.|+|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 5679999999999999999999998753 33 5666664 599999999999999999999998888777789898887
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
+..
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 654
No 112
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.40 E-value=0.011 Score=62.30 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=62.8
Q ss_pred CCcEEEEecC----CCCCC-------HHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 5 QHRCVFVGNI----PYDAT-------EEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 5 ~srtVFVGNL----P~d~T-------EEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
..++|.|.|+ -++.+ +++|++-+.+||.|.+|.|. | ..+.|.+-|.|.+.++|..||+.|+|..|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3567888886 22333 35677789999999998764 4 35689999999999999999999999999
Q ss_pred CCEEEEEEeecCC
Q 008851 74 NGRQLRVDFAEND 86 (551)
Q Consensus 74 ~GR~LrV~~A~~~ 86 (551)
+||.|........
T Consensus 340 dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 340 DGRQLTASIWDGK 352 (382)
T ss_pred cceEEEEEEeCCc
Confidence 9999988877643
No 113
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.20 E-value=0.012 Score=46.26 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=42.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 65 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi 65 (551)
++.|-|.+.+.+..+ .+.++|..||+|+++.+- ..+-+.||.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 357888898877654 455689999999998875 22458899999999999985
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.17 E-value=0.0034 Score=72.33 Aligned_cols=79 Identities=27% Similarity=0.377 Sum_probs=68.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
...|||.|.|+..|.++++.+|.++|.+.+.+++..+ .|+++|.+||+|.++.++.+++...+...++-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4569999999999999999999999999999988886 599999999999999999999877776666666677777665
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.98 E-value=0.078 Score=56.78 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=59.7
Q ss_pred ecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-C-EEEEEEeecCCC
Q 008851 12 GNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-G-RQLRVDFAENDK 87 (551)
Q Consensus 12 GNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~-G-R~LrV~~A~~~~ 87 (551)
-|-=|-+|-+-|+.++...|+|.+|.|.+. +|. -|.|||++.+.|++|...|||..|. | ..|+|+||++.+
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 366678999999999999999999988743 333 5899999999999999999999884 3 579999998754
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.96 E-value=0.0069 Score=67.59 Aligned_cols=77 Identities=26% Similarity=0.345 Sum_probs=65.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHH-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI---NGRQLR 79 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs-~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I---~GR~Lr 79 (551)
..++.|||.||-.-.|.-+|+.++. .+|.|+++ +.|+ -|..|||.|.+.++|.+....|||..+ +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3578999999999999999999998 46667777 3443 377899999999999999999999876 778899
Q ss_pred EEeecCC
Q 008851 80 VDFAEND 86 (551)
Q Consensus 80 V~~A~~~ 86 (551)
++|....
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 9998753
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.79 E-value=0.042 Score=58.74 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=68.7
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 4 SQHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d-~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
.+++.+.|-+|... +.-+.|-.+|..||.|.+|++++.+ .|-|.||..|....++|+..||+..+-|.+|.|.+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 36788899999876 4557799999999999999999776 58899999999999999999999999999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
++-.
T Consensus 360 SkQ~ 363 (494)
T KOG1456|consen 360 SKQN 363 (494)
T ss_pred cccc
Confidence 8743
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.75 E-value=0.023 Score=60.82 Aligned_cols=75 Identities=27% Similarity=0.361 Sum_probs=56.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHc---C-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 8 CVFVGNIPYDATEEQLIEICRE---V-GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 8 tVFVGNLP~d~TEEeLre~Fs~---~-G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.|-.++|||++++.++.+||.. . |..+.+.+++.. .|+..|-|||.|..+++|+.|+++ |...|+-|.|++-.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 4667899999999999999963 2 345566666554 599999999999999999999976 334555565655544
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
+
T Consensus 241 T 241 (508)
T KOG1365|consen 241 T 241 (508)
T ss_pred h
Confidence 3
No 119
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.62 E-value=0.062 Score=50.86 Aligned_cols=56 Identities=32% Similarity=0.570 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 22 QLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 22 eLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
+|-+.|..||.++-+|++.+ .-+|+|.+.+.|.+|+ .++|.+|+|+.|+|+...++
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 67778899999999998843 3589999999999999 58999999999999997753
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.54 E-value=0.035 Score=57.67 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCeeEEEEeecCCCCCcc-eEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 20 EEQLIEICREVGPVVSFRLVIDRETGKPK-GYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 20 EEeLre~Fs~~G~V~~vrLv~Dr~TGksK-GyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
|+++++.+++||.|..|.|..++.--... ---||+|...+.|.+|+-.|||..|+||.++..|-...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 45788899999999999887765322222 23599999999999999999999999999988876543
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.94 E-value=0.015 Score=65.90 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=66.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~-vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..+|||-.||..+++.++.++|...-.|++ |.|.+-+ |++.++.|||+|..++++.+|...-+.+.++.|.|+|+-..
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 578999999999999999999999888887 5555544 78899999999999888888887667777888999998765
Q ss_pred C
Q 008851 85 N 85 (551)
Q Consensus 85 ~ 85 (551)
+
T Consensus 513 ~ 513 (944)
T KOG4307|consen 513 D 513 (944)
T ss_pred h
Confidence 3
No 122
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.74 E-value=0.15 Score=45.47 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=52.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEe-ecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLV-IDR------ETGKPKGYGFCEYKDEETALSARRNLQGYEINGR 76 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv-~Dr------~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR 76 (551)
..++.|.|-+.|.. ....|.+.|++||.|++..-. ++. ..-....+-.|.|.+..+|.+|++ .||..|+|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34567888899988 456778889999999877511 100 001124577899999999999995 699999875
Q ss_pred -EEEEEeecC
Q 008851 77 -QLRVDFAEN 85 (551)
Q Consensus 77 -~LrV~~A~~ 85 (551)
.+-|.++++
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 566888753
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.47 E-value=0.0026 Score=73.25 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=59.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
.+++||.||+..+.+++|...|..+|.+..+++.....+++.+|+||++|.+.+++.+|+...++..+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 46789999999999999999999999998888877778899999999999999999999976554433
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.38 E-value=0.02 Score=58.40 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=50.5
Q ss_pred HHHHHHH-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 22 QLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 22 eLre~Fs-~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
++...|+ +||+|+++.+.... .-..+|=+||.|..+++|++|+..||+..++|++|..++..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 89999998665432 34567889999999999999999999999999999999865
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.27 E-value=0.045 Score=63.80 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=66.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEe
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING--RQLRVDF 82 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G--R~LrV~~ 82 (551)
..+.+|||+|..++....|...|..||.|..|.+- +..-|++|.|++...++.|++.+.+..|+| ++++|+|
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 46789999999999999999999999999987653 224599999999999999999999999975 6799999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
+...
T Consensus 528 a~~~ 531 (975)
T KOG0112|consen 528 ASPP 531 (975)
T ss_pred ccCC
Confidence 9864
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.04 E-value=0.035 Score=60.13 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=60.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCCEEEEEEee
Q 008851 7 RCVFVGNIPYDATEEQLIEICREV--GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY-EINGRQLRVDFA 83 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~--G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~-~I~GR~LrV~~A 83 (551)
.++|+|||...++..+|+.+|... |.-..|.+. .||+||++.|..-|.+|++.+++. ++.|+++.|+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee--------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 468999999999999999999754 222222221 689999999999999999999984 789999999998
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
-..+.
T Consensus 74 v~kkq 78 (584)
T KOG2193|consen 74 VPKKQ 78 (584)
T ss_pred hhHHH
Confidence 76543
No 127
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.46 E-value=0.32 Score=40.27 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 17 DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 17 d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
.++-++++..+..|+- . +|..|+ .|| ||.|.|.++|++|.+..++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999972 3 334454 577 99999999999999999998887776654
No 128
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.21 E-value=0.045 Score=62.02 Aligned_cols=70 Identities=31% Similarity=0.470 Sum_probs=61.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
++..+|||||+-+.+..+-++.++..||-|..+.... ||||+|.+......|++.|+...++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3567899999999999999999999999998876542 999999999999999999998889888775554
No 129
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.16 E-value=0.46 Score=38.90 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=44.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcC---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREV---GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~---G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~L 68 (551)
.-.+|+|.++. +.+.++|+.+|..| .....+.++-|. -|-|.|.+.+.|.+|+..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 34679999985 47788999999998 235688888774 4688999999999999764
No 130
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.04 E-value=0.11 Score=58.12 Aligned_cols=68 Identities=15% Similarity=0.302 Sum_probs=54.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHc--CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICRE--VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG--YEINGRQLR 79 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~--~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng--~~I~GR~Lr 79 (551)
..|.|.++.||..+-+|+++.+|+. |-++.+|.+-.+ .++ ||+|++..||+.|++.|.. .+|.|+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~nW-yITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DNW-YITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------Cce-EEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3577888999999999999999975 778888887543 233 8999999999999998854 366777653
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.56 E-value=0.14 Score=52.44 Aligned_cols=77 Identities=26% Similarity=0.366 Sum_probs=63.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC----ceeCCEEEEEEe
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG----YEINGRQLRVDF 82 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng----~~I~GR~LrV~~ 82 (551)
..|||.||..-++-|.+.+.|+.||+|....++.|- .++..|-++|+|...-.+.+|.+.+.. ..+.++.+-|+-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999877666663 589999999999999999999988742 244566666665
Q ss_pred ec
Q 008851 83 AE 84 (551)
Q Consensus 83 A~ 84 (551)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 54
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.38 E-value=0.043 Score=57.85 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=60.5
Q ss_pred cEEEEecCCCCCCHHH-H--HHHHHcCCCeeEEEEeecCC--CCCc-ceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 7 RCVFVGNIPYDATEEQ-L--IEICREVGPVVSFRLVIDRE--TGKP-KGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 7 rtVFVGNLP~d~TEEe-L--re~Fs~~G~V~~vrLv~Dr~--TGks-KGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
.-+||-+|+.....+. | .+.|.+||.|..+..-.+.. .+.. ..-++|+|...++|..||..++|+.++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4578888887765544 4 45689999999998877652 1111 123789999999999999999999999999888
Q ss_pred EeecCC
Q 008851 81 DFAEND 86 (551)
Q Consensus 81 ~~A~~~ 86 (551)
.+....
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776643
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.89 E-value=0.32 Score=47.23 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=52.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHc-CCCe---eEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceeC---
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICRE-VGPV---VSFRLVIDRETGK--PKGYGFCEYKDEETALSARRNLQGYEIN--- 74 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~-~G~V---~~vrLv~Dr~TGk--sKGyAFVEF~d~e~A~sAi~~Lng~~I~--- 74 (551)
....+|.|++||...||+++.+.++. ++.- ..+.-..+...-+ ...-|||.|.+.+++..-++.++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 35678999999999999999887665 5555 3443222221111 2356899999999999999999998772
Q ss_pred C--EEEEEEeecCC
Q 008851 75 G--RQLRVDFAEND 86 (551)
Q Consensus 75 G--R~LrV~~A~~~ 86 (551)
| ....|++|.-.
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 2 34678888753
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.64 E-value=0.055 Score=63.07 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=66.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++||+||++..+++.+|+..|..+|.|.+|.|..-+ -+.-..|+||.|.+.+.+.+|+..+.+..|....+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 36789999999999999999999999999999987653 24445689999999999999999888887766666666654
No 135
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=91.63 E-value=0.12 Score=54.00 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=69.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.+++|+|++.+.+.+++...++..+|.+..+...........+||+++.|...+.+..|+.....+.+.++.+...+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 57899999999999999999999999999998888788899999999999999999999976655677777776666554
Q ss_pred C
Q 008851 86 D 86 (551)
Q Consensus 86 ~ 86 (551)
.
T Consensus 168 ~ 168 (285)
T KOG4210|consen 168 R 168 (285)
T ss_pred c
Confidence 3
No 136
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.27 E-value=0.28 Score=52.89 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=60.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRE---TGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~---TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
...|.|.||...++.++++.+|.-.|.|.+++|.-..+ .......|||.|.|...+..|-. |-++.|-++.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 35899999999999999999999999999998864321 22335689999999999988875 555566566655554
Q ss_pred ec
Q 008851 83 AE 84 (551)
Q Consensus 83 A~ 84 (551)
.-
T Consensus 86 ~~ 87 (479)
T KOG4676|consen 86 YG 87 (479)
T ss_pred cC
Confidence 43
No 137
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.44 E-value=0.69 Score=45.41 Aligned_cols=61 Identities=28% Similarity=0.353 Sum_probs=45.2
Q ss_pred CHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEEEEeecC
Q 008851 19 TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ--GYEINGRQLRVDFAEN 85 (551)
Q Consensus 19 TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln--g~~I~GR~LrV~~A~~ 85 (551)
..+.|+++|..|+.+..+..... -+-..|.|.+.++|.+|...|+ +..+.|..|+|-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34789999999999998887743 2345889999999999999999 8999999999999854
No 138
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.10 E-value=1.1 Score=39.12 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=41.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ 69 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln 69 (551)
+...||+ +|.+|...||.++|+.||.|. |.++.| .-|||...+.+.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 4456665 999999999999999999764 555544 368999999999999998876
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.91 E-value=3.9 Score=37.06 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=49.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING 75 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G-~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G 75 (551)
...+.+...|+.++-++|..+.+.+- .|..++|++|. ..++-.+.+.|++.+.|..-.+.+||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34445566677777777876666653 56778888763 2355668889999999999999999987753
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=87.25 E-value=0.84 Score=51.18 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=54.4
Q ss_pred EEEEecCCCCCCHHHHHHHHH-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce---eCC-EEEEEEe
Q 008851 8 CVFVGNIPYDATEEQLIEICR-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYE---ING-RQLRVDF 82 (551)
Q Consensus 8 tVFVGNLP~d~TEEeLre~Fs-~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~---I~G-R~LrV~~ 82 (551)
++-|.|++...|...|.+.-+ ..|.-..+.+..|..+....|||||.|.+.+.+..+.+.+||.. |++ +.+.+.|
T Consensus 390 t~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itY 469 (549)
T KOG4660|consen 390 TLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITY 469 (549)
T ss_pred hhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeeh
Confidence 344445554444443333322 25666667788888888999999999999999999999999874 344 4467888
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
|+-
T Consensus 470 ArI 472 (549)
T KOG4660|consen 470 ARI 472 (549)
T ss_pred hhh
Confidence 764
No 141
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.33 E-value=0.45 Score=52.49 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=57.0
Q ss_pred cEEEEecCCCCCC-HHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 7 RCVFVGNIPYDAT-EEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 7 rtVFVGNLP~d~T-EEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
+.+-+.-+++... -++|...|.+||.|..|.+-+. .-.|.|+|.+..+|-.|. ..++..|++|.|+|.|-..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 3344444555544 5789999999999999988654 236789999999997777 4688999999999999876
Q ss_pred C
Q 008851 86 D 86 (551)
Q Consensus 86 ~ 86 (551)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.39 E-value=3.4 Score=39.45 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=54.1
Q ss_pred CCCcEEEEecCCCCCCH-HHHHH---HHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008851 4 SQHRCVFVGNIPYDATE-EQLIE---ICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TE-EeLre---~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~Lr 79 (551)
++=.+|.|+-|..++.. |++++ .++.||+|.+|.+. | +--|.|.|+|...|=+|+..++. ..-|..+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 34557778777666543 44544 46789999999875 3 34689999999999999998876 55677888
Q ss_pred EEeec
Q 008851 80 VDFAE 84 (551)
Q Consensus 80 V~~A~ 84 (551)
+.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88854
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=82.78 E-value=0.17 Score=55.00 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLV-IDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv-~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.++++.|.|||....+|.|..++..||.|..|..+ .|.+ ....-|.|...+.+..|+..|++..+....++|.|.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 36778999999999999999999999999999754 3333 334457899999999999999999999999999997
Q ss_pred cCC
Q 008851 84 END 86 (551)
Q Consensus 84 ~~~ 86 (551)
...
T Consensus 155 Pde 157 (584)
T KOG2193|consen 155 PDE 157 (584)
T ss_pred chh
Confidence 643
No 144
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.02 E-value=6.7 Score=41.50 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=54.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE-EEEEeec
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ-LRVDFAE 84 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~-LrV~~A~ 84 (551)
+..|-|-+++.... .-|-.+|++||.|++... +..-.+-+|.|.+.-+|++|+ ..+|..|+|.. |-|+.+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 45566667777644 456678999999987653 333458899999999999999 46888898765 5677766
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
.+
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 43
No 145
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.78 E-value=7.1 Score=32.37 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHcCCCe-----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 15 PYDATEEQLIEICREVGPV-----VSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 15 P~d~TEEeLre~Fs~~G~V-----~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
-..++..+|..++...+.| -.+++. ..|+||+-.. +.+..+++.|++..+.|++++|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3457788898888876544 456654 2378988754 5788999999999999999999875
No 146
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=77.52 E-value=23 Score=41.98 Aligned_cols=46 Identities=24% Similarity=0.181 Sum_probs=23.1
Q ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHHHHHhCCChHHHHHHHHHHhC
Q 008851 174 KMSRNQLNEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLG 220 (551)
Q Consensus 174 kl~p~QL~eiLsqLK~l~~~~P~~Ar~LL~~NPQLa~AL~QA~llLg 220 (551)
.++..+|+|.+-+ |..+....+.|..+=...-+.-.|--.++..|.
T Consensus 453 ~id~~~liD~~vd-kak~eeseqkA~e~~kk~~ke~ta~qe~qael~ 498 (1102)
T KOG1924|consen 453 DIDLTELIDKMVD-KAKAEESEQKAAELEKKFDKELTARQEAQAELQ 498 (1102)
T ss_pred cCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566666666632 333344444555555554444445444444443
No 147
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=76.94 E-value=1.5 Score=51.37 Aligned_cols=72 Identities=28% Similarity=0.379 Sum_probs=60.3
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--CCEEEEEEeecCC
Q 008851 9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI--NGRQLRVDFAEND 86 (551)
Q Consensus 9 VFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I--~GR~LrV~~A~~~ 86 (551)
.++-|.+-..+...|..+|++||.|.+.+..+|- ..|.|+|...+.|..|.+.|+|.++ .|-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3445556677888899999999999999887764 4789999999999999999999866 5778999999854
No 148
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.12 E-value=15 Score=40.74 Aligned_cols=67 Identities=19% Similarity=0.392 Sum_probs=56.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcC-CCeeEEEEeecCCCCCcce-EEEEEeCCHHHHHHHHHHhCCceeCC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREV-GPVVSFRLVIDRETGKPKG-YGFCEYKDEETALSARRNLQGYEING 75 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~-G~V~~vrLv~Dr~TGksKG-yAFVEF~d~e~A~sAi~~Lng~~I~G 75 (551)
++.|+|-.+|-.++-.||-.|+..+ -.|.++++++| |.+.. ...|.|.+.++|......+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7789999999999999999998765 46889999986 33433 46899999999999999999987753
No 149
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.16 E-value=22 Score=40.69 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=60.5
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHHHcC----CCeeEEEEeecC----------CCCC----------------------
Q 008851 4 SQHRCVFVGNIPYD-ATEEQLIEICREV----GPVVSFRLVIDR----------ETGK---------------------- 46 (551)
Q Consensus 4 ~~srtVFVGNLP~d-~TEEeLre~Fs~~----G~V~~vrLv~Dr----------~TGk---------------------- 46 (551)
...++|-|.|+.|+ +..++|.-+|..| |.|.+|.|.... .+|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45788999999997 5678999999876 578888764321 1222
Q ss_pred --------------c-ceEEEEEeCCHHHHHHHHHHhCCceeC--CEEEEEEeecC
Q 008851 47 --------------P-KGYGFCEYKDEETALSARRNLQGYEIN--GRQLRVDFAEN 85 (551)
Q Consensus 47 --------------s-KGyAFVEF~d~e~A~sAi~~Lng~~I~--GR~LrV~~A~~ 85 (551)
. .=||.|+|.+.++|.+.++.|+|+++. +..+.+.|.-.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 1 127899999999999999999999985 44555555543
No 150
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=68.02 E-value=35 Score=39.55 Aligned_cols=62 Identities=6% Similarity=0.111 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHcCCCee-----EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 15 PYDATEEQLIEICREVGPVV-----SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 15 P~d~TEEeLre~Fs~~G~V~-----~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
-..++..+|-.++..-+.|. .|+|. ..|.||+.. .+.+...++.|++..+.|+.|.|+.+..
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceEEEECCC
Confidence 34577777877777655543 34443 247899885 4568888999999999999999998753
No 151
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.67 E-value=11 Score=39.63 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=41.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCe-eEEEEeecCCCCCcceEEEEEeCCH-------HHHHHHHHHhC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPV-VSFRLVIDRETGKPKGYGFCEYKDE-------ETALSARRNLQ 69 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V-~~vrLv~Dr~TGksKGyAFVEF~d~-------e~A~sAi~~Ln 69 (551)
..-||++||+.++.-.+|+..+.+.|.+ .++.+. .+.|-||..|.+. +++.++++.++
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 3459999999999999999999998754 233332 2367789999765 44555554443
No 152
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=58.28 E-value=2.1 Score=43.43 Aligned_cols=68 Identities=29% Similarity=0.511 Sum_probs=57.0
Q ss_pred CCcEEEEec----CCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 5 QHRCVFVGN----IPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 5 ~srtVFVGN----LP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
...+++.|+ |...+++|.++++|+.-|++..+++..+.+ |+++.++|+.|.-....-.+++.+.+...
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 356778888 888899999999999999999999999876 89999999999877777777776665543
No 153
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=56.80 E-value=16 Score=30.67 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=45.6
Q ss_pred HHHHHHHHcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 21 EQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 21 EeLre~Fs~~G-~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
++|++-|...| .++.+..+..++++.+-..-||+.....+... .|+-..|+|+++.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899888 68888888888878777788888876543333 3444577899988887653
No 154
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=52.72 E-value=25 Score=29.13 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=45.1
Q ss_pred HHHHHHHHcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 21 EQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 21 EeLre~Fs~~G-~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
++|++-|...| .|.++.-+..+.++++--.-||+.....+..++ |+-..+.+..++|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 56788888877 678888787777788888889998766553333 344477888888887654
No 155
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=52.52 E-value=15 Score=34.65 Aligned_cols=60 Identities=25% Similarity=0.474 Sum_probs=42.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 64 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sA 64 (551)
....+++++++..++++++...|..+|.+....+...........+.++.+.....+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 567899999999999999999999999997777765554444444444444433333333
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=48.61 E-value=19 Score=32.81 Aligned_cols=56 Identities=20% Similarity=0.349 Sum_probs=31.6
Q ss_pred EEEEecCCCCC---------CHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHH
Q 008851 8 CVFVGNIPYDA---------TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKD-EETALSARR 66 (551)
Q Consensus 8 tVFVGNLP~d~---------TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d-~e~A~sAi~ 66 (551)
++.|-|++.+. +.++|++.|+.|..++ ++.++++ ..+.|+++|+|.. -.-...|++
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 45566776543 4578999999998875 5566665 3568999999974 444555654
No 157
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=43.04 E-value=6.1 Score=43.07 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=46.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 67 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~ 67 (551)
++++|++|..+|...++-+.|..+|.|.+.++- .|-..-||-++|........|++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh
Confidence 679999999999999999999999999887764 344466777888877777777654
No 158
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.57 E-value=52 Score=34.89 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=60.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHHHHH----HhCC--
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDR-------ETGKPKGYGFCEYKDEETALSARR----NLQG-- 70 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr-------~TGksKGyAFVEF~d~e~A~sAi~----~Lng-- 70 (551)
...|.+.+.|+..+++--++-..|.+||+|++|.++.+. +..+......+.|-+.+.|..-.. .|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 346778888999999888888889999999999998765 223445677889999999876543 2332
Q ss_pred ceeCCEEEEEEeec
Q 008851 71 YEINGRQLRVDFAE 84 (551)
Q Consensus 71 ~~I~GR~LrV~~A~ 84 (551)
..++...|++.|..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 24567778877765
No 159
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=37.73 E-value=72 Score=23.70 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHhCC-ChHHHH
Q 008851 182 EIMSEMKLMATQNKEQARQLLLAKP-PLLKAL 212 (551)
Q Consensus 182 eiLsqLK~l~~~~P~~Ar~LL~~NP-QLa~AL 212 (551)
++|.++..+...+++.|+.+|..+- +|-.|+
T Consensus 2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av 33 (43)
T PF14555_consen 2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAV 33 (43)
T ss_dssp HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHH
Confidence 6788888888889999999999987 666655
No 160
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=37.19 E-value=30 Score=34.29 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=54.3
Q ss_pred cEEEEecCCCCCCHH-----HHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EEEE
Q 008851 7 RCVFVGNIPYDATEE-----QLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR-QLRV 80 (551)
Q Consensus 7 rtVFVGNLP~d~TEE-----eLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR-~LrV 80 (551)
.++++.+|..++-.+ ....+|..|-+...+++++. .+..-|.|.+.+.|.+|...++...|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 456777777665432 34566777777666666532 45567899999999999999999999988 7888
Q ss_pred EeecCC
Q 008851 81 DFAEND 86 (551)
Q Consensus 81 ~~A~~~ 86 (551)
-++...
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 887654
No 161
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.38 E-value=84 Score=34.79 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=45.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGP-VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 67 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~-V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~ 67 (551)
-.+|-|-++|.+...|+|-..|+.|+. -.+|+++.|. .+|..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 456888899999999999999999974 4567777654 689999999999999853
No 162
>PF14893 PNMA: PNMA
Probab=34.75 E-value=41 Score=36.18 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=46.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHHHc-CCCeeEEEEe---ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 008851 1 MASSQHRCVFVGNIPYDATEEQLIEICRE-VGPVVSFRLV---IDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR 76 (551)
Q Consensus 1 ma~~~srtVFVGNLP~d~TEEeLre~Fs~-~G~V~~vrLv---~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR 76 (551)
|+-+..+.+.|.+||.+++|++|++.+.. .-++-.+++. +.++ - ..--++|||...-+-...=+. +.-.|.
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~-~-~~~aalve~~e~~n~~~iP~~---i~g~gg 87 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE-E-NAKAALVEFAEDVNYSLIPRE---IPGKGG 87 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh-c-ccceeeeecccccchhhCchh---cCCCCC
Confidence 44567788999999999999999988865 3333344432 2222 1 134678888654332111111 122456
Q ss_pred EEEEEeecC
Q 008851 77 QLRVDFAEN 85 (551)
Q Consensus 77 ~LrV~~A~~ 85 (551)
.-+|-+-..
T Consensus 88 ~W~Vv~~p~ 96 (331)
T PF14893_consen 88 PWRVVFKPP 96 (331)
T ss_pred ceEEEecCC
Confidence 677766554
No 163
>PRK11901 hypothetical protein; Reviewed
Probab=33.04 E-value=1.3e+02 Score=32.32 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=41.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEE--EeCCHHHHHHHHHHhCC
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFC--EYKDEETALSARRNLQG 70 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFV--EF~d~e~A~sAi~~Lng 70 (551)
...+|-|.. -.+++.|+.|.++++ +..+++..-+..|+.- |..| +|.+.++|+.|+..|-.
T Consensus 244 ~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 345555544 355888999888876 4555555544455543 4433 79999999999998863
No 164
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=31.47 E-value=9.2 Score=43.36 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=54.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING 75 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G 75 (551)
.|++|+.||+.+++-++|...++.+--+..+.+..+..-.+.+.+++|.|.-.-....||.+||++.+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4678999999999999999999998777777665443333445678899988778888888888765443
No 165
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.04 E-value=99 Score=27.76 Aligned_cols=36 Identities=42% Similarity=0.733 Sum_probs=21.4
Q ss_pred CCCCchHHHHHHH---HHHhcCHHH----------HhcCChHHHHHHHH
Q 008851 503 PQISPDVESALLQ---QVLSLTPEQ----------LNSLPPEQRQQVIQ 538 (551)
Q Consensus 503 ~q~~p~~~~~~~~---qv~~l~~~q----------~~~lp~~q~~~v~~ 538 (551)
..++|+.|..+.. .--+||||| ++.|||++|..|..
T Consensus 39 ~~mspeqq~r~~~rm~~W~~LspeqR~~~R~~~~~~~~Lpp~qR~~lr~ 87 (107)
T PF11304_consen 39 PSMSPEQQQRLRERMRRWAALSPEQRQQARENYQRFKQLPPEQRQALRA 87 (107)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555666655444 445677765 35788888875433
No 166
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.44 E-value=41 Score=35.48 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=31.5
Q ss_pred CcEEEEecCCCCC------------CHHHHHHHHHcCCCeeEEEEee-c----CCCCCcce
Q 008851 6 HRCVFVGNIPYDA------------TEEQLIEICREVGPVVSFRLVI-D----RETGKPKG 49 (551)
Q Consensus 6 srtVFVGNLP~d~------------TEEeLre~Fs~~G~V~~vrLv~-D----r~TGksKG 49 (551)
..+||+.+||..| +|+.|+..|+.||.|..|.|.. | .-+|+..|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisg 209 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISG 209 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCcccc
Confidence 3578888888643 4677999999999998877642 2 34666644
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.13 E-value=56 Score=33.85 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=27.1
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCCC
Q 008851 51 GFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDK 87 (551)
Q Consensus 51 AFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~~ 87 (551)
|||.|++.++|+.|++.+... +++.++|+.|-+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcc
Confidence 799999999999999976643 34566888876644
No 168
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=24.11 E-value=1.4e+02 Score=22.13 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=25.2
Q ss_pred hhhHhhhcCChHHHHHHHHHHHHHHhhCHHHHHHHHHh
Q 008851 167 PLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQLLLA 204 (551)
Q Consensus 167 ~IS~~Lakl~p~QL~eiLsqLK~l~~~~P~~Ar~LL~~ 204 (551)
++..-|..|+.+||..+|. .++..+|+-+..+-..
T Consensus 2 pl~RlLE~Ld~~qL~~lL~---~l~~~HPei~~~i~~~ 36 (38)
T PF14483_consen 2 PLPRLLETLDKDQLQSLLQ---SLCERHPEIQQEIRSI 36 (38)
T ss_dssp -HHHHHTTS-HHHHHHHHH---HHHHHSTHHHHHHHTT
T ss_pred ChhHHHHHcCHHHHHHHHH---HHHHhChhHHHHHHhh
Confidence 4667789999999999874 4555888888776554
No 169
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.25 E-value=1.6e+02 Score=26.49 Aligned_cols=30 Identities=40% Similarity=0.498 Sum_probs=18.2
Q ss_pred HHHHHHhcCHHHH----------hcCChHHHHHHHHHHHH
Q 008851 513 LLQQVLSLTPEQL----------NSLPPEQRQQVIQLQQA 542 (551)
Q Consensus 513 ~~~qv~~l~~~q~----------~~lp~~q~~~v~~~~~~ 542 (551)
....+-+|||||- ..|+|+||..+..--+.
T Consensus 34 ~a~r~~~mspeqq~r~~~rm~~W~~LspeqR~~~R~~~~~ 73 (107)
T PF11304_consen 34 IAERWPSMSPEQQQRLRERMRRWAALSPEQRQQARENYQR 73 (107)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444557777753 46777777776554333
No 170
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=20.31 E-value=2.5e+02 Score=28.07 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=38.2
Q ss_pred CCCHHHHHHH---HHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 17 DATEEQLIEI---CREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 17 d~TEEeLre~---Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
++++++|++| ...|| +.+.++.|+.++-.+-+.|+.=.|.+....|++.+....+
T Consensus 38 ~i~~~~lk~F~k~AkKyG--V~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~ 95 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYG--VDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKL 95 (204)
T ss_pred ecCHhhHHHHHHHHHHcC--CceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhh
Confidence 4566666655 45788 4455667877776666677777788889999988765444
Done!