Query 008851
Match_columns 551
No_of_seqs 357 out of 1731
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eba_G RNA15, KLLA0F09383P; HA 99.9 3.1E-23 1.1E-27 196.5 5.2 81 152-232 29-111 (174)
2 4fxv_A ELAV-like protein 1; RN 99.8 3.1E-20 1E-24 159.5 12.4 81 5-85 18-98 (99)
3 1u6f_A Tcubp1, RNA-binding pro 99.8 6.5E-20 2.2E-24 164.3 13.5 86 4-89 40-125 (139)
4 3s8s_A Histone-lysine N-methyl 99.8 2.8E-19 9.6E-24 156.6 12.7 84 3-86 3-86 (110)
5 1x5t_A Splicing factor 3B subu 99.8 2.7E-19 9.1E-24 150.1 11.5 85 3-87 2-87 (96)
6 2dnz_A Probable RNA-binding pr 99.8 3.5E-19 1.2E-23 149.2 12.1 85 3-87 2-86 (95)
7 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.8E-19 1.7E-23 162.1 13.6 85 4-88 37-121 (156)
8 2cpz_A CUG triplet repeat RNA- 99.8 4.4E-19 1.5E-23 154.2 12.6 86 3-88 22-107 (115)
9 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-18 4.7E-23 150.9 15.4 87 3-89 12-98 (115)
10 1whw_A Hypothetical protein ri 99.8 6.4E-19 2.2E-23 148.9 12.8 86 3-88 5-90 (99)
11 2cqd_A RNA-binding region cont 99.8 9.1E-19 3.1E-23 152.5 14.0 85 3-88 14-98 (116)
12 2dgs_A DAZ-associated protein 99.8 4.9E-19 1.7E-23 149.8 11.8 85 3-88 7-91 (99)
13 2lxi_A RNA-binding protein 10; 99.8 1.3E-19 4.5E-24 152.9 8.0 82 6-87 1-84 (91)
14 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4E-19 1.4E-23 150.9 10.8 85 4-88 10-94 (102)
15 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.8E-19 2.7E-23 144.5 12.1 83 4-86 4-86 (87)
16 2cq0_A Eukaryotic translation 99.8 7.2E-19 2.5E-23 149.8 12.0 85 3-87 12-96 (103)
17 1x4h_A RNA-binding protein 28; 99.8 7.2E-19 2.5E-23 151.2 12.2 86 4-89 13-104 (111)
18 1x5s_A Cold-inducible RNA-bind 99.8 4.8E-19 1.6E-23 150.4 10.9 85 4-88 10-94 (102)
19 1x5u_A Splicing factor 3B subu 99.8 5.7E-19 1.9E-23 150.7 11.3 85 3-87 12-96 (105)
20 2fy1_A RNA-binding motif prote 99.8 8.2E-19 2.8E-23 154.3 12.6 86 1-87 2-87 (116)
21 2cpf_A RNA binding motif prote 99.8 8.2E-19 2.8E-23 148.0 12.0 85 3-87 2-89 (98)
22 3md1_A Nuclear and cytoplasmic 99.8 1.3E-18 4.3E-23 142.0 12.5 81 6-86 1-81 (83)
23 2dnm_A SRP46 splicing factor; 99.8 4.3E-19 1.5E-23 151.2 10.0 85 4-88 11-95 (103)
24 2x1f_A MRNA 3'-END-processing 99.8 1.1E-18 3.8E-23 147.1 11.9 83 5-87 1-83 (96)
25 1wi8_A EIF-4B, eukaryotic tran 99.8 1E-18 3.5E-23 149.3 11.8 84 3-88 12-96 (104)
26 2dng_A Eukaryotic translation 99.8 1.6E-18 5.4E-23 147.9 12.9 83 3-87 12-94 (103)
27 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-18 3.4E-23 143.2 11.2 82 3-84 4-85 (85)
28 2cqc_A Arginine/serine-rich sp 99.8 1.4E-18 4.6E-23 145.3 11.7 83 3-85 12-94 (95)
29 2dgp_A Bruno-like 4, RNA bindi 99.8 8.2E-19 2.8E-23 150.0 10.5 85 3-87 10-97 (106)
30 2cph_A RNA binding motif prote 99.8 1.2E-18 4E-23 149.0 11.4 86 3-88 12-99 (107)
31 2cpe_A RNA-binding protein EWS 99.8 1.4E-18 5E-23 150.3 11.7 85 3-87 12-104 (113)
32 3ex7_B RNA-binding protein 8A; 99.8 8.1E-19 2.8E-23 154.7 10.1 85 4-88 20-104 (126)
33 2dhg_A TRNA selenocysteine ass 99.8 1.2E-18 4.1E-23 148.4 10.6 85 3-88 6-92 (104)
34 2div_A TRNA selenocysteine ass 99.8 1.3E-18 4.6E-23 146.9 10.6 85 3-87 6-95 (99)
35 2e5h_A Zinc finger CCHC-type a 99.8 1.8E-18 6E-23 144.6 11.0 81 4-84 14-94 (94)
36 2lkz_A RNA-binding protein 5; 99.8 5E-19 1.7E-23 151.8 7.7 81 5-85 8-94 (95)
37 2do4_A Squamous cell carcinoma 99.8 2.6E-18 8.7E-23 145.7 12.0 83 4-87 15-97 (100)
38 2do0_A HnRNP M, heterogeneous 99.8 7.5E-18 2.6E-22 145.8 14.8 84 3-87 12-95 (114)
39 2khc_A Testis-specific RNP-typ 99.8 1.2E-18 4E-23 152.0 9.7 82 3-84 37-118 (118)
40 2d9p_A Polyadenylate-binding p 99.8 2.2E-18 7.4E-23 146.8 10.9 84 3-88 12-95 (103)
41 1oo0_B CG8781-PA, drosophila Y 99.8 2.8E-18 9.7E-23 147.8 11.6 84 4-87 24-107 (110)
42 1p27_B RNA-binding protein 8A; 99.8 2.3E-18 7.9E-23 147.2 10.9 83 4-86 21-103 (106)
43 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.6E-18 2.3E-22 143.9 13.7 83 3-87 12-94 (103)
44 3p5t_L Cleavage and polyadenyl 99.8 4.6E-19 1.6E-23 148.2 6.4 81 7-87 2-84 (90)
45 2dnh_A Bruno-like 5, RNA bindi 99.8 3.8E-18 1.3E-22 145.6 12.0 84 4-88 13-99 (105)
46 2cqg_A TDP-43, TAR DNA-binding 99.8 7E-18 2.4E-22 143.7 13.5 84 3-88 12-95 (103)
47 4f25_A Polyadenylate-binding p 99.8 3.3E-18 1.1E-22 149.8 11.8 81 5-87 4-84 (115)
48 2dh8_A DAZ-associated protein 99.8 2E-18 7E-23 147.5 10.2 84 3-87 13-96 (105)
49 2la6_A RNA-binding protein FUS 99.8 2.2E-18 7.6E-23 146.0 10.3 82 3-84 10-99 (99)
50 4a8x_A RNA-binding protein wit 99.8 3.4E-18 1.2E-22 140.6 10.8 84 4-87 2-86 (88)
51 3ns6_A Eukaryotic translation 99.8 7.7E-19 2.6E-23 150.2 6.7 84 3-86 3-93 (100)
52 2ywk_A Putative RNA-binding pr 99.8 5E-18 1.7E-22 142.1 11.4 82 3-85 13-94 (95)
53 1x4b_A Heterogeneous nuclear r 99.7 4.4E-18 1.5E-22 148.1 11.3 82 6-88 27-108 (116)
54 3s7r_A Heterogeneous nuclear r 99.7 6.3E-18 2.2E-22 139.5 11.7 80 3-83 8-87 (87)
55 1p1t_A Cleavage stimulation fa 99.7 7.2E-19 2.5E-23 149.6 6.1 85 5-89 7-91 (104)
56 2m2b_A RNA-binding protein 10; 99.7 9E-19 3.1E-23 156.5 6.9 84 3-87 20-109 (131)
57 3ucg_A Polyadenylate-binding p 99.7 6.5E-18 2.2E-22 139.5 11.4 81 5-86 5-85 (89)
58 2cq3_A RNA-binding protein 9; 99.7 1.5E-17 5.1E-22 141.6 13.9 85 3-89 12-96 (103)
59 2jwn_A Embryonic polyadenylate 99.7 7.2E-18 2.4E-22 148.2 12.3 81 6-87 36-116 (124)
60 3n9u_C Cleavage and polyadenyl 99.7 5.5E-18 1.9E-22 157.3 12.0 81 5-85 54-136 (156)
61 1x4a_A Splicing factor, argini 99.7 1.2E-17 4.2E-22 143.8 13.3 83 2-87 18-100 (109)
62 2dis_A Unnamed protein product 99.7 6.5E-18 2.2E-22 145.1 11.3 86 3-88 5-94 (109)
63 3ulh_A THO complex subunit 4; 99.7 1.1E-17 3.9E-22 143.1 12.7 80 4-84 27-106 (107)
64 2cqp_A RNA-binding protein 12; 99.7 3.9E-18 1.3E-22 143.8 9.4 83 4-86 13-95 (98)
65 2ek1_A RNA-binding protein 12; 99.7 2.5E-18 8.5E-23 144.0 8.1 82 4-85 13-94 (95)
66 2jrs_A RNA-binding protein 39; 99.7 4.9E-18 1.7E-22 147.5 10.2 84 3-86 23-106 (108)
67 2rs2_A Musashi-1, RNA-binding 99.7 6.8E-18 2.3E-22 146.7 11.0 83 4-87 23-105 (109)
68 3q2s_C Cleavage and polyadenyl 99.7 2.9E-18 9.9E-23 168.3 8.9 81 5-85 67-149 (229)
69 2kxn_B Transformer-2 protein h 99.7 3.6E-18 1.2E-22 153.3 8.7 85 3-87 43-127 (129)
70 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-17 3.8E-22 139.2 10.9 83 3-87 5-87 (92)
71 2cq4_A RNA binding motif prote 99.7 2.9E-18 1E-22 148.8 7.5 82 5-87 24-105 (114)
72 2kn4_A Immunoglobulin G-bindin 99.7 1.1E-17 3.7E-22 152.7 11.4 83 5-87 69-151 (158)
73 2dgx_A KIAA0430 protein; RRM d 99.7 1.6E-17 5.5E-22 140.6 11.6 80 5-87 8-91 (96)
74 1x4e_A RNA binding motif, sing 99.7 1.5E-18 5.2E-23 142.7 4.9 82 3-84 2-83 (85)
75 2dgw_A Probable RNA-binding pr 99.7 2.8E-17 9.7E-22 136.9 12.3 82 3-87 7-88 (91)
76 2fc9_A NCL protein; structure 99.7 1.9E-17 6.5E-22 140.5 11.2 81 3-87 12-92 (101)
77 2fc8_A NCL protein; structure 99.7 2.1E-17 7.1E-22 140.3 11.4 82 3-87 12-93 (102)
78 2l9b_A MRNA 3'-END-processing 99.7 3.9E-18 1.3E-22 149.6 6.9 82 151-232 23-106 (109)
79 2cpi_A CCR4-NOT transcription 99.7 1.8E-17 6.3E-22 144.0 10.6 83 5-87 14-102 (111)
80 2kt5_A RNA and export factor-b 99.7 2.6E-17 8.8E-22 145.1 11.5 83 4-87 33-115 (124)
81 1x4c_A Splicing factor, argini 99.7 5E-17 1.7E-21 140.4 13.0 77 5-88 14-95 (108)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.8E-17 9.5E-22 152.3 12.1 84 5-88 71-154 (165)
83 2cpy_A RNA-binding protein 12; 99.7 1.1E-17 3.7E-22 146.1 8.8 83 3-87 12-95 (114)
84 2mss_A Protein (musashi1); RNA 99.7 6.2E-18 2.1E-22 135.8 6.7 75 8-83 1-75 (75)
85 2dgu_A Heterogeneous nuclear r 99.7 6.3E-17 2.1E-21 138.2 13.2 79 4-90 9-87 (103)
86 2lcw_A RNA-binding protein FUS 99.6 5.2E-19 1.8E-23 154.3 0.0 86 2-87 3-96 (116)
87 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-17 8.9E-22 146.5 11.0 80 4-83 61-140 (140)
88 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.8E-18 2E-22 144.3 6.1 81 4-86 17-98 (100)
89 1wez_A HnRNP H', FTP-3, hetero 99.7 1.5E-17 5.3E-22 143.3 8.7 80 4-86 13-92 (102)
90 2ki2_A SS-DNA binding protein 99.7 3.7E-18 1.3E-22 141.8 4.5 80 7-87 2-81 (90)
91 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.5E-18 2.2E-22 135.9 5.7 76 7-83 1-76 (77)
92 2cpx_A Hypothetical protein FL 99.7 8.2E-18 2.8E-22 145.7 5.9 85 4-88 23-107 (115)
93 2lea_A Serine/arginine-rich sp 99.7 9.9E-18 3.4E-22 151.4 6.6 84 5-88 46-129 (135)
94 1wg5_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 140.7 9.7 81 4-86 13-94 (104)
95 1s79_A Lupus LA protein; RRM, 99.7 2E-17 6.9E-22 143.3 8.2 80 4-85 9-88 (103)
96 2dnq_A RNA-binding protein 4B; 99.7 7.9E-17 2.7E-21 134.2 11.5 78 3-88 5-82 (90)
97 1x5o_A RNA binding motif, sing 99.7 5E-17 1.7E-21 140.8 10.5 82 4-86 23-112 (114)
98 3pgw_S U1-70K; protein-RNA com 99.7 1.1E-16 3.7E-21 171.2 15.1 84 5-88 101-184 (437)
99 1x4g_A Nucleolysin TIAR; struc 99.7 1.1E-16 3.9E-21 138.0 12.0 80 3-88 22-101 (109)
100 2db1_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 143.7 9.4 81 4-86 15-98 (118)
101 1sjq_A Polypyrimidine tract-bi 99.7 5.5E-17 1.9E-21 142.4 9.9 79 3-87 13-93 (105)
102 1fj7_A Nucleolin RBD1, protein 99.7 5.7E-18 2E-22 143.7 3.5 82 4-87 15-96 (101)
103 2err_A Ataxin-2-binding protei 99.7 6.2E-17 2.1E-21 140.4 10.0 82 3-86 26-107 (109)
104 2nlw_A Eukaryotic translation 99.7 5.2E-17 1.8E-21 139.8 9.0 80 5-86 14-100 (105)
105 2cq1_A PTB-like protein L; RRM 99.7 1.6E-16 5.5E-21 137.7 12.0 80 3-88 12-93 (101)
106 1nu4_A U1A RNA binding domain; 99.7 4.3E-17 1.5E-21 136.9 8.1 84 1-87 3-90 (97)
107 1x4d_A Matrin 3; structural ge 99.7 6.4E-17 2.2E-21 140.9 9.1 79 3-87 12-93 (102)
108 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-16 4.7E-21 136.2 10.2 76 3-84 4-79 (89)
109 2dgt_A RNA-binding protein 30; 99.7 3.9E-16 1.3E-20 130.5 12.7 77 3-87 7-83 (92)
110 1iqt_A AUF1, heterogeneous nuc 99.7 2.1E-17 7.3E-22 132.5 4.6 75 8-83 1-75 (75)
111 1wex_A Hypothetical protein (r 99.7 1.5E-16 5.2E-21 138.4 10.4 78 4-87 13-92 (104)
112 2la4_A Nuclear and cytoplasmic 99.7 1.2E-16 4E-21 135.6 9.3 76 4-85 25-100 (101)
113 2cpd_A Apobec-1 stimulating pr 99.7 4.7E-16 1.6E-20 131.6 13.0 76 4-87 13-90 (99)
114 2e5g_A U6 snRNA-specific termi 99.7 2.5E-16 8.7E-21 132.3 11.2 78 4-87 6-83 (94)
115 2xs2_A Deleted in azoospermia- 99.7 6.1E-17 2.1E-21 137.6 7.3 80 5-87 8-87 (102)
116 1wel_A RNA-binding protein 12; 99.7 2.7E-17 9.2E-22 145.4 5.2 81 5-86 24-104 (124)
117 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-16 5E-21 140.4 9.9 80 4-87 26-106 (111)
118 2cqh_A IGF-II mRNA-binding pro 99.7 1.6E-16 5.4E-21 132.9 9.5 78 3-87 5-84 (93)
119 2hvz_A Splicing factor, argini 99.7 2.1E-16 7.2E-21 134.1 10.2 76 7-87 1-76 (101)
120 2hgn_A Heterogeneous nuclear r 99.7 1.7E-17 5.9E-22 151.9 3.7 81 4-87 44-124 (139)
121 3r27_A HnRNP L, heterogeneous 99.7 2.4E-16 8.4E-21 137.2 10.8 78 3-86 18-97 (100)
122 2hgl_A HNRPF protein, heteroge 99.7 8.7E-17 3E-21 146.6 8.3 80 4-85 42-124 (136)
123 1why_A Hypothetical protein ri 99.7 2.1E-16 7.3E-21 133.3 10.1 78 4-87 15-94 (97)
124 2krb_A Eukaryotic translation 99.7 4.6E-17 1.6E-21 133.3 5.7 73 6-80 1-80 (81)
125 2kvi_A Nuclear polyadenylated 99.7 1.1E-16 3.8E-21 135.2 8.2 78 3-88 7-85 (96)
126 2ad9_A Polypyrimidine tract-bi 99.7 2.1E-16 7.2E-21 141.5 10.3 79 3-87 28-108 (119)
127 1l3k_A Heterogeneous nuclear r 99.7 2.9E-16 9.8E-21 145.7 11.6 84 5-89 103-186 (196)
128 1fxl_A Paraneoplastic encephal 99.7 5.2E-16 1.8E-20 139.6 12.9 81 6-86 2-82 (167)
129 4f02_A Polyadenylate-binding p 99.7 3.6E-16 1.2E-20 149.7 12.5 82 5-86 14-95 (213)
130 2cpj_A Non-POU domain-containi 99.7 2.2E-16 7.6E-21 133.7 9.7 78 4-87 13-90 (99)
131 1wf1_A RNA-binding protein RAL 99.7 2.9E-16 9.9E-21 135.6 10.6 75 5-87 26-101 (110)
132 3md3_A Nuclear and cytoplasmic 99.7 5E-16 1.7E-20 139.5 12.6 81 4-84 85-165 (166)
133 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-16 4.2E-21 134.1 7.9 79 4-87 14-92 (96)
134 2e5j_A Methenyltetrahydrofolat 99.7 2.2E-16 7.4E-21 133.5 9.2 79 4-87 17-95 (97)
135 2dnp_A RNA-binding protein 14; 99.7 5.4E-16 1.9E-20 129.1 11.4 77 3-87 6-82 (90)
136 2a3j_A U1 small nuclear ribonu 99.7 2.4E-16 8.4E-21 142.0 10.0 82 3-87 26-111 (127)
137 2jvo_A Nucleolar protein 3; nu 99.7 3.3E-16 1.1E-20 136.1 10.5 77 4-88 29-105 (108)
138 1b7f_A Protein (SXL-lethal pro 99.7 4.7E-16 1.6E-20 140.6 11.8 83 5-87 2-84 (168)
139 2xnq_A Nuclear polyadenylated 99.7 7E-16 2.4E-20 131.3 11.9 76 3-86 19-95 (97)
140 2ytc_A PRE-mRNA-splicing facto 99.7 4.3E-16 1.5E-20 127.7 10.2 76 3-84 9-85 (85)
141 3egn_A RNA-binding protein 40; 99.7 8.6E-17 2.9E-21 145.1 6.6 85 4-88 43-132 (143)
142 2lmi_A GRSF-1, G-rich sequence 99.7 4.8E-17 1.6E-21 140.5 4.5 82 3-86 8-92 (107)
143 3lqv_A PRE-mRNA branch site pr 99.6 4.9E-16 1.7E-20 134.7 10.5 82 3-87 5-86 (115)
144 2dnn_A RNA-binding protein 12; 99.6 5E-16 1.7E-20 136.3 10.1 78 6-86 16-93 (109)
145 2qfj_A FBP-interacting repress 99.6 9.2E-16 3.2E-20 144.4 11.8 83 5-87 124-206 (216)
146 2yh0_A Splicing factor U2AF 65 99.6 1.2E-15 4E-20 141.8 11.9 84 4-87 112-195 (198)
147 2f3j_A RNA and export factor b 99.6 5.2E-16 1.8E-20 146.6 9.7 82 4-86 86-167 (177)
148 1x5p_A Negative elongation fac 99.6 2.2E-15 7.6E-20 127.2 12.4 77 4-88 13-89 (97)
149 1l3k_A Heterogeneous nuclear r 99.6 1.2E-15 4.1E-20 141.5 11.6 82 4-86 11-92 (196)
150 2g4b_A Splicing factor U2AF 65 99.6 1.1E-15 3.8E-20 138.9 10.7 80 5-84 93-172 (172)
151 2j8a_A Histone-lysine N-methyl 99.6 7.3E-16 2.5E-20 140.4 9.4 79 7-85 3-95 (136)
152 2dha_A FLJ20171 protein; RRM d 99.6 3.9E-16 1.3E-20 140.0 7.4 80 4-85 21-104 (123)
153 2i2y_A Fusion protein consists 99.6 6.9E-16 2.3E-20 140.2 9.1 79 4-87 71-149 (150)
154 3beg_B Splicing factor, argini 99.6 5.9E-16 2E-20 135.6 8.1 75 5-86 15-94 (115)
155 1x4f_A Matrin 3; structural ge 99.6 5.2E-16 1.8E-20 137.6 7.2 79 3-87 22-103 (112)
156 2e44_A Insulin-like growth fac 99.6 8.6E-16 3E-20 128.9 8.0 78 5-86 14-92 (96)
157 1wg1_A KIAA1579 protein, homol 99.6 1.6E-15 5.4E-20 126.1 9.0 77 3-86 2-78 (88)
158 1wf0_A TDP-43, TAR DNA-binding 99.6 8.8E-16 3E-20 127.3 7.4 79 3-88 2-80 (88)
159 2cjk_A Nuclear polyadenylated 99.6 9.1E-16 3.1E-20 138.8 8.0 80 6-86 87-166 (167)
160 2hgm_A HNRPF protein, heteroge 99.6 6.7E-16 2.3E-20 139.3 6.7 79 4-85 40-120 (126)
161 1whx_A Hypothetical protein ri 99.6 1.3E-15 4.3E-20 132.9 8.3 76 5-86 9-84 (111)
162 2dnl_A Cytoplasmic polyadenyla 99.6 1.6E-15 5.6E-20 132.3 8.7 80 3-85 5-87 (114)
163 3md3_A Nuclear and cytoplasmic 99.6 4.9E-15 1.7E-19 133.0 11.7 80 7-87 1-80 (166)
164 2qfj_A FBP-interacting repress 99.6 2.6E-15 8.9E-20 141.3 9.8 81 5-85 27-107 (216)
165 4f02_A Polyadenylate-binding p 99.6 4.3E-15 1.5E-19 142.2 11.1 80 5-86 102-181 (213)
166 1b7f_A Protein (SXL-lethal pro 99.6 5.1E-15 1.8E-19 133.7 10.8 80 4-83 87-168 (168)
167 3d2w_A TAR DNA-binding protein 99.6 3.2E-15 1.1E-19 125.6 8.4 76 3-87 8-85 (89)
168 1fxl_A Paraneoplastic encephal 99.6 6.6E-15 2.3E-19 132.3 10.5 79 5-83 87-167 (167)
169 2hzc_A Splicing factor U2AF 65 99.6 6.1E-15 2.1E-19 121.1 9.2 73 3-82 3-86 (87)
170 3nmr_A Cugbp ELAV-like family 99.6 7.4E-15 2.5E-19 133.2 10.6 83 4-86 1-88 (175)
171 2cjk_A Nuclear polyadenylated 99.6 3.8E-15 1.3E-19 134.7 8.6 79 5-85 2-80 (167)
172 1sjr_A Polypyrimidine tract-bi 99.6 1.1E-14 3.8E-19 137.3 11.5 78 6-87 46-125 (164)
173 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-14 4.2E-19 143.4 12.1 83 2-87 5-91 (282)
174 2cq2_A Hypothetical protein LO 99.6 1E-14 3.4E-19 129.8 9.8 79 3-87 22-107 (114)
175 3nmr_A Cugbp ELAV-like family 99.5 1.2E-14 4.1E-19 131.8 10.0 79 5-84 94-175 (175)
176 3zzy_A Polypyrimidine tract-bi 99.5 3.3E-14 1.1E-18 129.3 12.8 76 7-87 29-107 (130)
177 3tyt_A Heterogeneous nuclear r 99.5 1.8E-14 6.1E-19 138.7 11.0 79 4-87 2-81 (205)
178 2pe8_A Splicing factor 45; RRM 99.5 3.7E-14 1.3E-18 123.5 11.9 84 3-86 5-94 (105)
179 2bz2_A Negative elongation fac 99.5 2.4E-14 8.2E-19 127.2 9.1 77 4-88 37-113 (121)
180 1fje_B Nucleolin RBD12, protei 99.5 2.8E-14 9.5E-19 130.5 9.6 77 5-86 98-174 (175)
181 2voo_A Lupus LA protein; RNA-b 99.5 5.5E-14 1.9E-18 134.4 11.2 78 6-85 109-186 (193)
182 2diu_A KIAA0430 protein; struc 99.5 5.1E-14 1.8E-18 121.7 9.9 75 4-88 6-86 (96)
183 3smz_A Protein raver-1, ribonu 99.5 1E-13 3.4E-18 137.0 13.3 84 4-87 93-176 (284)
184 2e5i_A Heterogeneous nuclear r 99.5 6.9E-14 2.4E-18 125.9 10.5 74 8-87 27-103 (124)
185 2ghp_A U4/U6 snRNA-associated 99.5 6.2E-14 2.1E-18 139.0 10.6 82 4-86 208-291 (292)
186 3pgw_A U1-A; protein-RNA compl 99.5 9E-14 3.1E-18 137.2 11.4 75 5-84 206-281 (282)
187 1fje_B Nucleolin RBD12, protei 99.5 1.4E-14 4.8E-19 132.5 4.8 82 3-86 10-91 (175)
188 3smz_A Protein raver-1, ribonu 99.5 1.2E-13 3.9E-18 136.5 11.5 83 4-87 182-265 (284)
189 2adc_A Polypyrimidine tract-bi 99.5 1.2E-13 4.2E-18 133.5 10.9 78 4-86 32-110 (229)
190 2dit_A HIV TAT specific factor 99.5 3.8E-13 1.3E-17 117.0 12.2 81 3-87 12-103 (112)
191 1qm9_A Polypyrimidine tract-bi 99.5 2.1E-13 7E-18 127.6 10.5 78 5-87 2-80 (198)
192 2yh0_A Splicing factor U2AF 65 99.4 6.1E-14 2.1E-18 130.2 4.3 75 5-86 3-88 (198)
193 2ghp_A U4/U6 snRNA-associated 99.4 4.1E-13 1.4E-17 133.1 10.2 83 5-88 116-199 (292)
194 3sde_A Paraspeckle component 1 99.4 6.2E-13 2.1E-17 131.2 10.7 82 5-87 95-180 (261)
195 3u1l_A PRE-mRNA-splicing facto 99.4 3.2E-13 1.1E-17 134.3 8.2 79 4-88 132-231 (240)
196 3tyt_A Heterogeneous nuclear r 99.4 4E-13 1.4E-17 129.2 8.7 77 5-83 122-204 (205)
197 3v4m_A Splicing factor U2AF 65 99.4 8.2E-13 2.8E-17 114.9 9.6 83 4-86 3-97 (105)
198 1qm9_A Polypyrimidine tract-bi 99.4 4.1E-13 1.4E-17 125.6 8.0 76 5-85 119-196 (198)
199 1jmt_A Splicing factor U2AF 35 99.4 2.3E-13 7.7E-18 118.1 5.7 72 11-83 20-103 (104)
200 2adc_A Polypyrimidine tract-bi 99.4 8.3E-13 2.9E-17 127.6 9.7 76 5-85 150-227 (229)
201 3sde_A Paraspeckle component 1 99.4 1.1E-12 3.7E-17 129.4 10.3 75 5-85 21-95 (261)
202 2g4b_A Splicing factor U2AF 65 99.4 1.5E-12 5.2E-17 118.1 10.2 75 5-86 3-88 (172)
203 3ue2_A Poly(U)-binding-splicin 99.4 1.8E-12 6.3E-17 115.4 10.1 83 4-86 18-109 (118)
204 2d9o_A DNAJ (HSP40) homolog, s 99.3 3.1E-11 1.1E-15 104.6 11.3 75 6-87 10-91 (100)
205 3tht_A Alkylated DNA repair pr 99.2 3.2E-11 1.1E-15 125.6 9.7 76 3-84 15-97 (345)
206 2j8p_A Cleavage stimulation fa 99.2 1.3E-11 4.4E-16 94.0 4.4 42 507-548 6-47 (49)
207 3s6e_A RNA-binding protein 39; 99.1 1.7E-10 5.9E-15 102.1 9.9 79 4-86 5-93 (114)
208 2dnr_A Synaptojanin-1; RRM dom 98.9 3.9E-09 1.3E-13 90.4 9.0 74 4-86 5-86 (91)
209 1owx_A Lupus LA protein, SS-B, 98.9 2.9E-09 1E-13 95.6 7.7 76 4-85 16-95 (121)
210 3dxb_A Thioredoxin N-terminall 98.8 7.6E-09 2.6E-13 99.3 8.0 69 18-86 141-213 (222)
211 1ufw_A Synaptojanin 2; RNP dom 98.7 1.7E-08 5.8E-13 87.1 6.1 73 4-85 13-94 (95)
212 2l9w_A U4/U6 snRNA-associated- 98.2 7.5E-06 2.6E-10 72.5 9.2 74 5-84 20-98 (117)
213 1wey_A Calcipressin 1; structu 97.1 0.0018 6.2E-08 56.6 8.5 76 4-85 3-83 (104)
214 1uw4_A UPF3X; nonsense mediate 96.6 0.012 3.9E-07 50.3 9.9 78 7-84 2-86 (91)
215 2dhx_A Poly (ADP-ribose) polym 96.6 0.016 5.5E-07 50.6 10.4 73 4-85 6-83 (104)
216 1whv_A Poly(A)-specific ribonu 96.0 0.017 5.8E-07 50.1 7.3 54 6-68 16-69 (100)
217 3ctr_A Poly(A)-specific ribonu 95.1 0.023 7.9E-07 49.4 4.9 54 7-69 7-60 (101)
218 1wwh_A Nucleoporin 35, nucleop 94.7 0.17 5.9E-06 45.1 9.8 72 5-84 23-95 (119)
219 2kn4_A Immunoglobulin G-bindin 94.4 0.032 1.1E-06 50.0 4.3 35 35-71 2-36 (158)
220 2l08_A Regulator of nonsense t 93.9 0.083 2.8E-06 45.6 5.8 79 6-84 9-94 (97)
221 3pq1_A Poly(A) RNA polymerase; 93.7 0.035 1.2E-06 59.9 3.7 55 6-66 53-107 (464)
222 2i2y_A Fusion protein consists 92.9 0.036 1.2E-06 49.5 1.9 41 44-85 9-50 (150)
223 3p3d_A Nucleoporin 53; structu 89.4 0.48 1.6E-05 43.0 5.5 78 6-85 7-98 (132)
224 3d45_A Poly(A)-specific ribonu 79.8 3.6 0.00012 44.7 7.8 55 6-69 440-494 (507)
225 4eyt_A Telomerase associated p 44.2 1.5E+02 0.0052 25.3 9.8 72 5-84 11-89 (129)
226 2g0c_A ATP-dependent RNA helic 29.2 79 0.0027 24.6 5.0 68 8-84 2-75 (76)
227 2qsf_X RAD23, UV excision repa 28.4 40 0.0014 31.6 3.6 32 183-214 34-69 (171)
228 1kbh_B CREB-binding protein, n 26.2 20 0.00068 27.9 0.8 41 174-214 4-45 (59)
229 4e8u_A Putative uncharacterize 24.9 1E+02 0.0035 28.9 5.7 57 8-67 14-82 (172)
230 3mfb_A Uncharacterized protein 24.6 83 0.0028 29.1 4.9 36 18-53 3-41 (157)
231 3e21_A HFAF1, FAS-associated f 23.2 82 0.0028 23.2 3.7 32 181-212 6-39 (45)
No 1
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=99.87 E-value=3.1e-23 Score=196.45 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=69.2
Q ss_pred CCCCCcccccCC-CCc-hhhHhhhcCChHHHHHHHHHHHHHHhhCHHHHHHHHHhCCChHHHHHHHHHHhCCCChhhhhc
Q 008851 152 SNQNGIQSQLAS-PND-PLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQVLQM 229 (551)
Q Consensus 152 ~~~~glp~~~~~-a~D-~IS~~Lakl~p~QL~eiLsqLK~l~~~~P~~Ar~LL~~NPQLa~AL~QA~llLgmid~~v~q~ 229 (551)
.++.|++..... ++| .|+++|++|+++||+|+|++||.|+.+||++||+||.+||||+||+|||+|+||+||+++++.
T Consensus 29 ~LP~G~~~~~~~t~pd~~IS~~Ls~lpp~QL~eiL~qmK~l~~~nP~~ar~LL~~nPQLayAl~QAlL~mgivd~~~l~~ 108 (174)
T 4eba_G 29 WLPVGVDVNINMTTPAMCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCSVDQLTQ 108 (174)
T ss_dssp CCCCCBCCCTTTCCHHHHHHHHHTTSCHHHHHHHHHHHHHGGGC--CCHHHHHHSCTHHHHHHHHHHHHTSCCSSSTHHH
T ss_pred CCCCCCCCCCCcCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHHH
Confidence 444555443333 578 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 008851 230 PIL 232 (551)
Q Consensus 230 ~~~ 232 (551)
+..
T Consensus 109 v~~ 111 (174)
T 4eba_G 109 LAM 111 (174)
T ss_dssp HC-
T ss_pred HHH
Confidence 866
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=159.48 Aligned_cols=81 Identities=27% Similarity=0.527 Sum_probs=78.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
++++|||+|||+++||++|+++|+.||.|++|++++|+.||+++|||||+|.+.++|.+|++.|||..|+|+.|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 008851 85 N 85 (551)
Q Consensus 85 ~ 85 (551)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 3
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=6.5e-20 Score=164.31 Aligned_cols=86 Identities=31% Similarity=0.561 Sum_probs=81.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||++++|++|+++|+.||.|++|++++|+.||+++|||||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 008851 84 ENDKGA 89 (551)
Q Consensus 84 ~~~~~~ 89 (551)
+.+..+
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=156.60 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=80.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+||+++++|++|+++|++||.|++|+|++|+.||+++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9754
No 5
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=150.14 Aligned_cols=85 Identities=24% Similarity=0.447 Sum_probs=81.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSF-RLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~v-rLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
..++++|||+|||+++++++|+++|+.||.|.++ +++.|+.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 008851 82 FAENDK 87 (551)
Q Consensus 82 ~A~~~~ 87 (551)
++.+..
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 998754
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=149.17 Aligned_cols=85 Identities=34% Similarity=0.609 Sum_probs=81.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
.+++++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+..+.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98643
No 7
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=4.8e-19 Score=162.09 Aligned_cols=85 Identities=26% Similarity=0.462 Sum_probs=81.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||++++|++|+++|+.||.|++|+|+.|+.|++++|||||+|.+.++|++|++.||++.|+|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87544
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=4.4e-19 Score=154.25 Aligned_cols=86 Identities=23% Similarity=0.512 Sum_probs=81.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||++++|++|+++|+.||.|++|+|++|+.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987543
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.4e-18 Score=150.90 Aligned_cols=87 Identities=33% Similarity=0.523 Sum_probs=82.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 008851 83 AENDKGA 89 (551)
Q Consensus 83 A~~~~~~ 89 (551)
++.....
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=148.86 Aligned_cols=86 Identities=33% Similarity=0.475 Sum_probs=81.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987543
No 11
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.1e-19 Score=152.49 Aligned_cols=85 Identities=29% Similarity=0.516 Sum_probs=80.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||++++|++|+++|+.||.|++|+|++|+.|++++|||||+|.+.++|++|++.+++ .|+|+.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44689999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 986543
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=149.84 Aligned_cols=85 Identities=29% Similarity=0.537 Sum_probs=80.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++ +++..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987543
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=152.88 Aligned_cols=82 Identities=18% Similarity=0.384 Sum_probs=76.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEEee
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL-QGYEINGRQLRVDFA 83 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G-~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~L-ng~~I~GR~LrV~~A 83 (551)
+++|||+|||+++||++|+++|+.|| .|++|+|++|+.||++||||||+|.+.++|.+|++.+ ++..|+||+|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57899999999999999999999999 8999999999999999999999999999999999877 456899999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 14
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=150.87 Aligned_cols=85 Identities=26% Similarity=0.467 Sum_probs=81.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
+....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=144.49 Aligned_cols=83 Identities=31% Similarity=0.518 Sum_probs=77.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|++|++.||+..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 008851 84 END 86 (551)
Q Consensus 84 ~~~ 86 (551)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=149.83 Aligned_cols=85 Identities=26% Similarity=0.459 Sum_probs=81.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+..+.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98754
No 17
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=151.24 Aligned_cols=86 Identities=30% Similarity=0.556 Sum_probs=81.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceeCCEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ------GYEINGRQ 77 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln------g~~I~GR~ 77 (551)
.+.++|||+|||+++++++|+++|+.||.|.+|+|++|+.||+++|||||+|.+.++|.+|++.|+ +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 468899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEeecCCCCC
Q 008851 78 LRVDFAENDKGA 89 (551)
Q Consensus 78 LrV~~A~~~~~~ 89 (551)
|+|+++..+...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999875443
No 18
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-19 Score=150.44 Aligned_cols=85 Identities=31% Similarity=0.592 Sum_probs=81.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||++++|++|+++|+.||.|.+|+++.|+.+++++|||||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
+....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87543
No 19
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=150.72 Aligned_cols=85 Identities=33% Similarity=0.522 Sum_probs=81.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
....++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+....
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98754
No 20
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=8.2e-19 Score=154.27 Aligned_cols=86 Identities=22% Similarity=0.522 Sum_probs=81.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 1 ma~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
++..+.++|||+|||+++++++|+++|+.||.|++|+++.|+ +|+++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 456678999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 008851 81 DFAENDK 87 (551)
Q Consensus 81 ~~A~~~~ 87 (551)
++++...
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9998654
No 21
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.2e-19 Score=147.95 Aligned_cols=85 Identities=32% Similarity=0.523 Sum_probs=80.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRE---TGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~---TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~Lr 79 (551)
..+.++|||+|||++++|++|+++|+.||.|.+|+++.|+. |++++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999999999999999999999999999999987 779999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 008851 80 VDFAENDK 87 (551)
Q Consensus 80 V~~A~~~~ 87 (551)
|++++...
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99998654
No 22
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.3e-18 Score=142.03 Aligned_cols=81 Identities=28% Similarity=0.561 Sum_probs=78.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
+++|||+|||+++++++|+++|+.||.|.+++++.|+.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 008851 86 D 86 (551)
Q Consensus 86 ~ 86 (551)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=151.20 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.||+++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
+....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87543
No 24
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=1.1e-18 Score=147.08 Aligned_cols=83 Identities=43% Similarity=0.933 Sum_probs=79.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
++++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 25
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=149.35 Aligned_cols=84 Identities=32% Similarity=0.606 Sum_probs=79.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRET-GKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~T-GksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
..+.++|||+|||++++|++|+++|+.|| |.+|+|+.|+.| |+++|||||+|.+.++|++|+ .|++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34679999999999999999999999999 999999999998 999999999999999999999 999999999999999
Q ss_pred eecCCCC
Q 008851 82 FAENDKG 88 (551)
Q Consensus 82 ~A~~~~~ 88 (551)
++..+..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987544
No 26
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.6e-18 Score=147.94 Aligned_cols=83 Identities=30% Similarity=0.562 Sum_probs=78.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||++++|++|+++|+.|| |++|++++|+.||+++|||||+|.+.++|.+|+ .||+..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45689999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98654
No 27
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1e-18 Score=143.23 Aligned_cols=82 Identities=27% Similarity=0.511 Sum_probs=79.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+++++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 008851 83 AE 84 (551)
Q Consensus 83 A~ 84 (551)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=145.29 Aligned_cols=83 Identities=24% Similarity=0.510 Sum_probs=79.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=8.2e-19 Score=149.96 Aligned_cols=85 Identities=28% Similarity=0.470 Sum_probs=80.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI---NGRQLR 79 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I---~GR~Lr 79 (551)
..+.++|||+|||++++|++|+++|+.||.|.+|+++.|+.||+++|||||+|.+.++|.+|++.||+..+ +|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred EEeecCCC
Q 008851 80 VDFAENDK 87 (551)
Q Consensus 80 V~~A~~~~ 87 (551)
|++++...
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998754
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=149.01 Aligned_cols=86 Identities=24% Similarity=0.499 Sum_probs=81.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVID-RETGKPKGYGFCEYKDEETALSARRNL-QGYEINGRQLRV 80 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~D-r~TGksKGyAFVEF~d~e~A~sAi~~L-ng~~I~GR~LrV 80 (551)
....++|||+|||+++++++|+++|+.||.|.+|+++.| +.+|+++|||||+|.+.++|.+|++.| |+..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346789999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred EeecCCCC
Q 008851 81 DFAENDKG 88 (551)
Q Consensus 81 ~~A~~~~~ 88 (551)
+|++.+..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987543
No 31
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=150.29 Aligned_cols=85 Identities=28% Similarity=0.498 Sum_probs=80.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVV--------SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~--------~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~ 74 (551)
..+.++|||+|||+++++++|+++|+.||.|. .|+|+.|+.+|+++|||||+|.+.++|.+|++.||+..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44689999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CEEEEEEeecCCC
Q 008851 75 GRQLRVDFAENDK 87 (551)
Q Consensus 75 GR~LrV~~A~~~~ 87 (551)
|+.|+|++++...
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998754
No 32
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=8.1e-19 Score=154.68 Aligned_cols=85 Identities=29% Similarity=0.448 Sum_probs=80.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|.+|+|+.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|+|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
.....
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 87544
No 33
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=148.42 Aligned_cols=85 Identities=27% Similarity=0.428 Sum_probs=80.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHc-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICRE-VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYE-INGRQLRV 80 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~-~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~-I~GR~LrV 80 (551)
..+.++|||+|||+++++++|+++|+. ||.|.+|+++.|+ +|+++|||||+|.+.++|.+|++.|++.. |+|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 457899999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EeecCCCC
Q 008851 81 DFAENDKG 88 (551)
Q Consensus 81 ~~A~~~~~ 88 (551)
+++.....
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99976543
No 34
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=146.87 Aligned_cols=85 Identities=24% Similarity=0.439 Sum_probs=80.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE----
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVV-SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ---- 77 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~-~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~---- 77 (551)
..+.++|||+|||++++|++|+++|+.||.|+ +|++++|+.+|+++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 008851 78 LRVDFAENDK 87 (551)
Q Consensus 78 LrV~~A~~~~ 87 (551)
|+|+||+...
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997643
No 35
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=144.58 Aligned_cols=81 Identities=27% Similarity=0.516 Sum_probs=78.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
++.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|+||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=151.75 Aligned_cols=81 Identities=22% Similarity=0.413 Sum_probs=76.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCC--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGP--VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY----EINGRQL 78 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~--V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~----~I~GR~L 78 (551)
.=.+|||+|||+++||++|+++|+.||. |++|++++|+.||++||||||+|.+.++|.+|++.||+. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 679999999999999999999999999999999999986 5999999
Q ss_pred EEEeecC
Q 008851 79 RVDFAEN 85 (551)
Q Consensus 79 rV~~A~~ 85 (551)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=145.66 Aligned_cols=83 Identities=33% Similarity=0.655 Sum_probs=79.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.|+ +|+++|||||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
+++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 38
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.5e-18 Score=145.75 Aligned_cols=84 Identities=25% Similarity=0.379 Sum_probs=79.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|++|+|+.|+ +|+++|||||+|.+.++|++|++.||++.|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 97643
No 39
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.2e-18 Score=152.01 Aligned_cols=82 Identities=22% Similarity=0.500 Sum_probs=78.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||++++|++|+++|++||.|++|++++|+.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 008851 83 AE 84 (551)
Q Consensus 83 A~ 84 (551)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=146.84 Aligned_cols=84 Identities=23% Similarity=0.411 Sum_probs=79.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.| +|+++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
++....
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987543
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=2.8e-18 Score=147.78 Aligned_cols=84 Identities=32% Similarity=0.528 Sum_probs=80.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|++..|+|+.|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
..+.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8654
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=147.17 Aligned_cols=83 Identities=30% Similarity=0.469 Sum_probs=79.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.++++|||+|||+++++++|+++|+.||.|.+|+++.|+.||+++|||||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 008851 84 END 86 (551)
Q Consensus 84 ~~~ 86 (551)
..+
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 864
No 43
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-18 Score=143.85 Aligned_cols=83 Identities=25% Similarity=0.549 Sum_probs=77.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+ ++|||||+|.+.++|.+|++.|++..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 456899999999999999999999999999999999998643 689999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
++...
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98754
No 44
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=4.6e-19 Score=148.20 Aligned_cols=81 Identities=20% Similarity=0.392 Sum_probs=73.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVG--PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G--~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
.+|||+|||++++|++|+++|+.|| .|.+++++.|+.||+++|||||+|.+.++|++|++.|||..|+||.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=3.8e-18 Score=145.59 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=79.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC---EEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING---RQLRV 80 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G---R~LrV 80 (551)
.+.++|||+|||++++|++|+++|+.||.|.+|+|+.|+ +|+++|||||+|.+.++|.+|++.||+..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467999999999999999999999999999999999998 79999999999999999999999999999988 99999
Q ss_pred EeecCCCC
Q 008851 81 DFAENDKG 88 (551)
Q Consensus 81 ~~A~~~~~ 88 (551)
++++....
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987653
No 46
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7e-18 Score=143.70 Aligned_cols=84 Identities=25% Similarity=0.430 Sum_probs=78.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|++|+++.|+.||+++|||||+|.+.++|.+|++ +++.|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999998 46799999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
+..+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987544
No 47
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=3.3e-18 Score=149.83 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=75.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
.+++|||+|||+++||++|+++|+.||.|++|+|++|+ +++||||||+|.+.++|++|++.|++..|+|+.|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999986 4589999999999999999999999999999999999997
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 643
No 48
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=147.50 Aligned_cols=84 Identities=21% Similarity=0.417 Sum_probs=79.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|.+|++. +++.|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98654
No 49
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=146.00 Aligned_cols=82 Identities=29% Similarity=0.475 Sum_probs=78.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVS--------FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~--------vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~ 74 (551)
....++|||+|||+++++++|+++|++||.|.+ ++++.|++||+++|||||+|.+.++|.+|++.|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346899999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CEEEEEEeec
Q 008851 75 GRQLRVDFAE 84 (551)
Q Consensus 75 GR~LrV~~A~ 84 (551)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 50
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=140.64 Aligned_cols=84 Identities=19% Similarity=0.417 Sum_probs=79.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGK-PKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGk-sKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
...++|||+|||+++++++|+++|+.||.|.+++++.|+.++. ++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3578999999999999999999999999999999999998877 999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97643
No 51
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=7.7e-19 Score=150.23 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=80.1
Q ss_pred CCCCcEEEEecCCC------CCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-
Q 008851 3 SSQHRCVFVGNIPY------DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING- 75 (551)
Q Consensus 3 ~~~srtVFVGNLP~------d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G- 75 (551)
...+++|||+|||+ ++++++|+++|+.||.|.+|+|++|+.||+++|||||+|.+.++|.+|++.|||..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCC
Q 008851 76 RQLRVDFAEND 86 (551)
Q Consensus 76 R~LrV~~A~~~ 86 (551)
+.|+|+++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999763
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=142.11 Aligned_cols=82 Identities=35% Similarity=0.575 Sum_probs=78.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
....++|||+|||+++++++|+++|+.||.|++|++..|+. |+++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34679999999999999999999999999999999999986 99999999999999999999999999999999999999
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 53
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=148.12 Aligned_cols=82 Identities=21% Similarity=0.396 Sum_probs=78.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++|||+|||+++++++|+++|+.||.|++|+|+.|+.||+++|||||+|.+.++|.+|++. +++.|+|+.|+|+++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 58999999999999999999999999999999999999999999999999999999999987 99999999999999987
Q ss_pred CCC
Q 008851 86 DKG 88 (551)
Q Consensus 86 ~~~ 88 (551)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 54
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=6.3e-18 Score=139.51 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=75.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||++++|++|+++|+.||.|.+|+++.|+.||+++|||||+|.+.++|.+|++ +++..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999996 588899999999998
Q ss_pred e
Q 008851 83 A 83 (551)
Q Consensus 83 A 83 (551)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 55
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-19 Score=149.58 Aligned_cols=85 Identities=73% Similarity=1.129 Sum_probs=80.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 008851 85 NDKGA 89 (551)
Q Consensus 85 ~~~~~ 89 (551)
.....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76543
No 56
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=9e-19 Score=156.52 Aligned_cols=84 Identities=20% Similarity=0.374 Sum_probs=79.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVS--FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY----EINGR 76 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~--vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~----~I~GR 76 (551)
....++|||+|||+++||++|+++|+.||.|.. |+|++|+.||++||||||+|.+. +|.+|++.||+. .|+||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEeecCCC
Q 008851 77 QLRVDFAENDK 87 (551)
Q Consensus 77 ~LrV~~A~~~~ 87 (551)
.|+|+++++.+
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998653
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=6.5e-18 Score=139.52 Aligned_cols=81 Identities=30% Similarity=0.546 Sum_probs=77.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++++++|+++|+.||.|.+++++.|+.+|+++|||||+|.+.++|++|+ .||+..|+|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=141.64 Aligned_cols=85 Identities=24% Similarity=0.495 Sum_probs=78.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||++++|++|+++|+.||.|.+|+++.|+. .++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34679999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 008851 83 AENDKGA 89 (551)
Q Consensus 83 A~~~~~~ 89 (551)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 59
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=7.2e-18 Score=148.21 Aligned_cols=81 Identities=25% Similarity=0.501 Sum_probs=77.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++|||+|||+++++++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|.+|+ .|++..|+|+.|+|++++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999999999999999999999999999 8999999999999999986
Q ss_pred CC
Q 008851 86 DK 87 (551)
Q Consensus 86 ~~ 87 (551)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 60
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=157.30 Aligned_cols=81 Identities=28% Similarity=0.491 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVG--PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G--~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..++|||||||++++|++|+++|+.|| .|++|+|+.|+.||+++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 975
No 61
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=143.76 Aligned_cols=83 Identities=24% Similarity=0.472 Sum_probs=76.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 2 a~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
+..+.++|||+|||++++|++|+++|+.||.|++|++..+ ++++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999654 5689999999999999999999999999999999999
Q ss_pred eecCCC
Q 008851 82 FAENDK 87 (551)
Q Consensus 82 ~A~~~~ 87 (551)
+++...
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998754
No 62
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=145.07 Aligned_cols=86 Identities=30% Similarity=0.475 Sum_probs=80.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGP-VVSFRLV-IDRETGKPKGYGFCEYKDEETALSARRNLQ--GYEINGRQL 78 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~-V~~vrLv-~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln--g~~I~GR~L 78 (551)
+.+.++|||+|||+++++++|+++|+.||. |.+|+++ .|+.||+++|||||+|.+.++|.+|++.|+ +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346889999999999999999999999998 9999998 899999999999999999999999999996 589999999
Q ss_pred EEEeecCCCC
Q 008851 79 RVDFAENDKG 88 (551)
Q Consensus 79 rV~~A~~~~~ 88 (551)
+|+|++++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 63
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.1e-17 Score=143.08 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=77.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||++++|++|+++|+.||.|++|+++.|+ +|+++|||||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 357899999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 64
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=143.77 Aligned_cols=83 Identities=14% Similarity=0.284 Sum_probs=78.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||++++|++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 008851 84 END 86 (551)
Q Consensus 84 ~~~ 86 (551)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 65
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.5e-18 Score=143.95 Aligned_cols=82 Identities=15% Similarity=0.280 Sum_probs=77.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
+..++|||+|||+++++++|+++|+.||.|.+++++.|+.+|+++|||||+|.+.++|++|++.||+..|+||.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 008851 84 EN 85 (551)
Q Consensus 84 ~~ 85 (551)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=147.53 Aligned_cols=84 Identities=35% Similarity=0.648 Sum_probs=80.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|.+|++.|++..|+|+.|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9764
No 67
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=6.8e-18 Score=146.68 Aligned_cols=83 Identities=20% Similarity=0.343 Sum_probs=76.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||++++|++|+++|+.||.|.+|++++|+.||+++|||||+|.+.++|.+|++.+ +..|+|+.|+|+++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 36789999999999999999999999999999999999999999999999999999999999876 49999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
..+.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 68
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=2.9e-18 Score=168.26 Aligned_cols=81 Identities=20% Similarity=0.408 Sum_probs=77.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVG--PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G--~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..++|||+||++++||++|+++|+.|| .|++|+|++|+.||++||||||+|.+.++|++||+.||++.|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 874
No 69
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=3.6e-18 Score=153.34 Aligned_cols=85 Identities=26% Similarity=0.565 Sum_probs=81.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||++++|++|+++|+.||.|++|++++|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+..++
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98653
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.1e-17 Score=139.18 Aligned_cols=83 Identities=31% Similarity=0.510 Sum_probs=78.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|++..+ +|+++|||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999999874 799999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+++..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98654
No 71
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-18 Score=148.83 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=78.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++++++|+++|+.||.|++|+|+.|+.||+++|||||+|.+.++|++|+ .||++.|+|+.|+|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
...
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 643
No 72
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.1e-17 Score=152.69 Aligned_cols=83 Identities=25% Similarity=0.456 Sum_probs=79.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||++++|++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|++++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
+.+
T Consensus 149 ~~~ 151 (158)
T 2kn4_A 149 YGR 151 (158)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=140.61 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCcEEEEecCCCCCCHHHHH----HHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLI----EICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLr----e~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
+.++|||+|||++++|++|+ ++|+.||.|++|+++.|+++ +|||||+|.+.++|.+|++.||+..|+||.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 57899999999999999999 99999999999999999876 899999999999999999999999999999999
Q ss_pred EeecCCC
Q 008851 81 DFAENDK 87 (551)
Q Consensus 81 ~~A~~~~ 87 (551)
+++++..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997643
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-18 Score=142.67 Aligned_cols=82 Identities=23% Similarity=0.473 Sum_probs=77.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ec
Q 008851 83 AE 84 (551)
Q Consensus 83 A~ 84 (551)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 75
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=136.90 Aligned_cols=82 Identities=22% Similarity=0.382 Sum_probs=77.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
....++|||+|||+++++++|+++|+.| .|.+|++++| .+|+++|||||+|.+.++|.+|++ +|+..|+||.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999999 789999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+....
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98653
No 76
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=140.51 Aligned_cols=81 Identities=30% Similarity=0.503 Sum_probs=74.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||++++|++|+++|+.||.| +++.+ .+|+++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3468999999999999999999999999977 56666 6899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
++.+.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98753
No 77
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=140.27 Aligned_cols=82 Identities=37% Similarity=0.609 Sum_probs=75.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.| .+|+++.|+.+++++|||||+|.+.++|.+|++.||++.|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3468899999999999999999999977 4788889999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98654
No 78
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.9e-18 Score=149.62 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=72.2
Q ss_pred CCCCCCccccc-CCCCc-hhhHhhhcCChHHHHHHHHHHHHHHhhCHHHHHHHHHhCCChHHHHHHHHHHhCCCChhhhh
Q 008851 151 QSNQNGIQSQL-ASPND-PLTLHLAKMSRNQLNEIMSEMKLMATQNKEQARQLLLAKPPLLKALFQAQIMLGMATPQVLQ 228 (551)
Q Consensus 151 ~~~~~glp~~~-~~a~D-~IS~~Lakl~p~QL~eiLsqLK~l~~~~P~~Ar~LL~~NPQLa~AL~QA~llLgmid~~v~q 228 (551)
++++.|++... ..++| .|+++|++++++|++|||++||.|+..||++||+||.+||||+||||||+|+||+||+++++
T Consensus 23 p~lP~G~~v~~~~~ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~a~~LL~q~PQLAyAl~QalL~m~ivd~~~l~ 102 (109)
T 2l9b_A 23 PELPSGIDVNINMTTPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDAASLLELCPQLSFVTAELLLTNGICKVDDLI 102 (109)
T ss_dssp TTCCCCBCCCTTTSCHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHTSSCHHHHT
T ss_pred CCCCCCCCCCCCCCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHH
Confidence 34445554422 35789 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 008851 229 MPIL 232 (551)
Q Consensus 229 ~~~~ 232 (551)
..+.
T Consensus 103 ~ll~ 106 (109)
T 2l9b_A 103 PLAS 106 (109)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 8765
No 79
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=143.99 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCCCCHHHHH---HHHHcCCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLI---EICREVGPVVSFRLVIDRETG---KPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLr---e~Fs~~G~V~~vrLv~Dr~TG---ksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~L 78 (551)
..++|||+|||++++|++|+ ++|++||.|.+|+++.|+.++ +++|||||+|.+.++|++|++.||+..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 57899999999999999999 999999999999999998755 556999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 008851 79 RVDFAENDK 87 (551)
Q Consensus 79 rV~~A~~~~ 87 (551)
+|++|..+.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998754
No 80
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=2.6e-17 Score=145.09 Aligned_cols=83 Identities=18% Similarity=0.397 Sum_probs=78.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
..+++|||+|||+++++++|+++|+.||.|++|+++.|+ +|+++|||||+|.+.++|.+|++.|++..|+|+.|+|++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 357899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8643
No 81
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5e-17 Score=140.36 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=72.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-----EEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING-----RQLR 79 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G-----R~Lr 79 (551)
..++|||+|||++++|++|+++|+.||.|++|+|+.| |||||+|.+.++|++|++.||+..|+| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 5789999999999999999999999999999999875 899999999999999999999999999 9999
Q ss_pred EEeecCCCC
Q 008851 80 VDFAENDKG 88 (551)
Q Consensus 80 V~~A~~~~~ 88 (551)
|+++.++..
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999987543
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=2.8e-17 Score=152.34 Aligned_cols=84 Identities=32% Similarity=0.526 Sum_probs=79.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+.++|||+|||+++++++|+++|+.||.|..|.|+.++.||+++|||||+|.+.++|.+|++.||+..|+|+.|+|.|+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008851 85 NDKG 88 (551)
Q Consensus 85 ~~~~ 88 (551)
....
T Consensus 151 ~~~~ 154 (165)
T 1rk8_A 151 VKGP 154 (165)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 7554
No 83
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=146.12 Aligned_cols=83 Identities=20% Similarity=0.420 Sum_probs=77.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPV-VSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V-~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
..+.++|||+|||++++|++|+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|++|++. |+..|+||.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3467899999999999999999999999999 899999998 999999999999999999999987 9999999999999
Q ss_pred eecCCC
Q 008851 82 FAENDK 87 (551)
Q Consensus 82 ~A~~~~ 87 (551)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998643
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=6.2e-18 Score=135.83 Aligned_cols=75 Identities=24% Similarity=0.436 Sum_probs=72.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 8 tVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
+|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|++|++ +++..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999997 9999999999999986
No 85
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=6.3e-17 Score=138.21 Aligned_cols=79 Identities=22% Similarity=0.450 Sum_probs=72.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|++|+++ +|||||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 357899999999999999999999999999999986 569999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 008851 84 ENDKGAD 90 (551)
Q Consensus 84 ~~~~~~~ 90 (551)
+......
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8765443
No 86
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.2e-19 Score=154.27 Aligned_cols=86 Identities=28% Similarity=0.455 Sum_probs=81.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 2 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVS--------FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 2 a~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~--------vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
+..+.++|||+|||+++++++|+++|+.||.|.+ |+++.|+.+|+++|||||+|.+.++|.+|++.||+..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3457899999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCEEEEEEeecCCC
Q 008851 74 NGRQLRVDFAENDK 87 (551)
Q Consensus 74 ~GR~LrV~~A~~~~ 87 (551)
+|+.|+|+++..+.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999998654
No 87
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=146.52 Aligned_cols=80 Identities=28% Similarity=0.515 Sum_probs=76.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|++++++.|+.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999986
No 88
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=5.8e-18 Score=144.34 Aligned_cols=81 Identities=35% Similarity=0.631 Sum_probs=75.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDR-ETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr-~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
...++|||+|||+++++++|+++|+.|| |.+|++++|+ .+|+++|||||+|.+.++|.+|+ .|++..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4579999999999999999999999999 9999999998 69999999999999999999999 8999999999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
++.+
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9764
No 89
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=143.33 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=74.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++||++|+++|+.|| +++|+|++|+ +|+++|||||+|.+.++|++|++ +|+..|+||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4678999999999999999999999999 5599999998 89999999999999999999994 7999999999999998
Q ss_pred cCC
Q 008851 84 END 86 (551)
Q Consensus 84 ~~~ 86 (551)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 90
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=3.7e-18 Score=141.76 Aligned_cols=80 Identities=41% Similarity=0.687 Sum_probs=74.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
++|||+|||++++|++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.+ |.+|++.||+..++|+.|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999864
Q ss_pred C
Q 008851 87 K 87 (551)
Q Consensus 87 ~ 87 (551)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 91
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.5e-18 Score=135.92 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=73.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
++|||+|||+++++++|+++|++||.|.+++++.|+.+|+++|||||+|.+.++|++|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999999 9999999999987
No 92
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.2e-18 Score=145.73 Aligned_cols=85 Identities=21% Similarity=0.412 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.++++|||+|||+++++++|+++|+.||.|..+.+..+..+|+++|||||+|.+.++|.+|++.|++..|+|+.|+|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35789999999999999999999999999954433333338999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
+....
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87543
No 93
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=9.9e-18 Score=151.42 Aligned_cols=84 Identities=25% Similarity=0.444 Sum_probs=80.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+.++|||+|||+++++++|+++|+.||.|++|+++.|+.+|+++|||||+|.+.++|++|++.|++..|+|+.|+|+|++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008851 85 NDKG 88 (551)
Q Consensus 85 ~~~~ 88 (551)
....
T Consensus 126 ~~~~ 129 (135)
T 2lea_A 126 YGRP 129 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 94
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=140.65 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=75.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~-vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
...++|||+|||++++|++|+++|+.||.|.+ |+|++| .+|+++|||||+|.+.++|++|++. ++..|+||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45789999999999999999999999999998 889888 7999999999999999999999987 99999999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8754
No 95
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=143.31 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=76.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++|+++|+++|+.||.|.+|++++|+. |+++|||||+|.+.++|.+|+. ++++.|+|+.|+|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4578999999999999999999999999999999999987 9999999999999999999998 8999999999999998
Q ss_pred cC
Q 008851 84 EN 85 (551)
Q Consensus 84 ~~ 85 (551)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 75
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.9e-17 Score=134.16 Aligned_cols=78 Identities=32% Similarity=0.591 Sum_probs=72.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4578999999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
++....
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 97
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5e-17 Score=140.78 Aligned_cols=82 Identities=22% Similarity=0.436 Sum_probs=77.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------CC
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI--------NG 75 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I--------~G 75 (551)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.|+ +|+++|||||+|.+.++|.+|++.||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 467899999999999999999999999999999999998 999999999999999999999999999999 57
Q ss_pred EEEEEEeecCC
Q 008851 76 RQLRVDFAEND 86 (551)
Q Consensus 76 R~LrV~~A~~~ 86 (551)
+.|+|+|+++.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999854
No 98
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=1.1e-16 Score=171.21 Aligned_cols=84 Identities=32% Similarity=0.608 Sum_probs=80.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+.++|||+|||+++|+++|+++|+.||.|+.|.|+.|+.||+++|||||+|.+.++|.+||..||++.|+|+.|+|+|+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 008851 85 NDKG 88 (551)
Q Consensus 85 ~~~~ 88 (551)
....
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7544
No 99
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=137.96 Aligned_cols=80 Identities=21% Similarity=0.440 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
....++|||+|||+++++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|++..|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999875 79999999999999999999999999999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
++....
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987654
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4.3e-17 Score=143.66 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=76.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGP---VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~---V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
...++|||+|||+++||++|+++|+.||. |.+|+|++|++ |+++|||||+|.+.++|++|++ +|+..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45789999999999999999999999999 89999999987 9999999999999999999998 9999999999999
Q ss_pred EeecCC
Q 008851 81 DFAEND 86 (551)
Q Consensus 81 ~~A~~~ 86 (551)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999753
No 101
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-17 Score=142.42 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=72.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ--GYEINGRQLRV 80 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln--g~~I~GR~LrV 80 (551)
..+.++|||+|||+++||++|+++|+.||.|++|+|++| ||||||+|.+.++|.+|++.|+ +..|+||.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 357899999999999999999999999999999999865 7999999999999999999886 47899999999
Q ss_pred EeecCCC
Q 008851 81 DFAENDK 87 (551)
Q Consensus 81 ~~A~~~~ 87 (551)
+||+.+.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 9998654
No 102
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=5.7e-18 Score=143.74 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=76.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++++++|+++|+.||.|.. .++.|+.+|+++|||||+|.+.++|.+|++ ||+..|+|+.|+|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 36789999999999999999999999999988 777888899999999999999999999998 9999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
..+.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.2e-17 Score=140.41 Aligned_cols=82 Identities=26% Similarity=0.537 Sum_probs=76.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
....++|||+|||+++++++|+++|+.||.|.+|++++|+ ++++|||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3468999999999999999999999999999999999886 45899999999999999999999999999999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
++.+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 104
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=139.81 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=75.1
Q ss_pred CCcEEEEecCCCCC------CHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-E
Q 008851 5 QHRCVFVGNIPYDA------TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR-Q 77 (551)
Q Consensus 5 ~srtVFVGNLP~d~------TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR-~ 77 (551)
.+++|||+|||+++ ++++|+++|+.||.|.+|+++ +.+|+++|||||+|.+.++|.+|++.|||..|+|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 47899999999999 789999999999999999988 47899999999999999999999999999999998 9
Q ss_pred EEEEeecCC
Q 008851 78 LRVDFAEND 86 (551)
Q Consensus 78 LrV~~A~~~ 86 (551)
|+|+++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999754
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=137.69 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=72.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL--QGYEINGRQLRV 80 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~L--ng~~I~GR~LrV 80 (551)
..++++|||+|||++++|++|+++|+.||.|++|+++.+ ||||||+|.+.++|.+|++.| ++..|+||.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346899999999999999999999999999999998864 799999999999999999976 567899999999
Q ss_pred EeecCCCC
Q 008851 81 DFAENDKG 88 (551)
Q Consensus 81 ~~A~~~~~ 88 (551)
+|++.+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99986543
No 106
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=4.3e-17 Score=136.87 Aligned_cols=84 Identities=19% Similarity=0.429 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHH----HHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 008851 1 MASSQHRCVFVGNIPYDATEEQLI----EICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR 76 (551)
Q Consensus 1 ma~~~srtVFVGNLP~d~TEEeLr----e~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR 76 (551)
++..++++|||+|||+++++++|+ ++|+.||.|.+|++.. +|+++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 356788999999999999999999 9999999999999873 688899999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 008851 77 QLRVDFAENDK 87 (551)
Q Consensus 77 ~LrV~~A~~~~ 87 (551)
.|+|++++.+.
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999998754
No 107
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.4e-17 Score=140.88 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEE
Q 008851 3 SSQHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG--YEINGRQLR 79 (551)
Q Consensus 3 ~~~srtVFVGNLP~-d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng--~~I~GR~Lr 79 (551)
..++++|||+|||+ +++|++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|+||+|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34789999999999 9999999999999999999999865 58999999999999999999885 469999999
Q ss_pred EEeecCCC
Q 008851 80 VDFAENDK 87 (551)
Q Consensus 80 V~~A~~~~ 87 (551)
|+||...+
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998644
No 108
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.4e-16 Score=136.15 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
.+.+..||||||++.+||++|+++|.+||+|++|++.. +||||||||.+.++|.+|++.||+.+++||.|+|++
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 45678899999999999999999999999999999875 589999999999999999999999999999999999
Q ss_pred ec
Q 008851 83 AE 84 (551)
Q Consensus 83 A~ 84 (551)
|.
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 95
No 109
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.9e-16 Score=130.47 Aligned_cols=77 Identities=29% Similarity=0.478 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
....++|||+|||+++++++|+++|+.||.|.+|+++ ++||||+|.+.++|.+|++.||++.|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4568999999999999999999999999999999987 44999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
++.+.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98654
No 110
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=2.1e-17 Score=132.48 Aligned_cols=75 Identities=27% Similarity=0.423 Sum_probs=71.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 8 tVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
+|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|++|++. ++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999984 889999999999885
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=138.40 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=70.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG--YEINGRQLRVD 81 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng--~~I~GR~LrV~ 81 (551)
.++++|||+|||++++|++|+++|+.||.|.+|+++.+ ||||||+|.+.++|.+|++.|++ ..|+|+.|+|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46899999999999999999999999999999998753 79999999999999999998865 45999999999
Q ss_pred eecCCC
Q 008851 82 FAENDK 87 (551)
Q Consensus 82 ~A~~~~ 87 (551)
|++.+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998654
No 112
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.2e-16 Score=135.62 Aligned_cols=76 Identities=29% Similarity=0.519 Sum_probs=71.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
..+++|||+|||+++++++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.||+..|+|+.|+|+|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 357899999999999999999999999999999987 45899999999999999999999999999999999998
Q ss_pred cC
Q 008851 84 EN 85 (551)
Q Consensus 84 ~~ 85 (551)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 113
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.7e-16 Score=131.63 Aligned_cols=76 Identities=22% Similarity=0.454 Sum_probs=70.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREV--GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~--G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
.+.++|||+|||+++++++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999 999998864 6899999999999999999999999999999999
Q ss_pred eecCCC
Q 008851 82 FAENDK 87 (551)
Q Consensus 82 ~A~~~~ 87 (551)
++++..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998654
No 114
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=132.30 Aligned_cols=78 Identities=29% Similarity=0.427 Sum_probs=71.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||++++|++|+++|+.||.|.+| +.|+.+|+ ||||+|.+.++|.+|++ |+++.|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356899999999999999999999999999987 67777777 99999999999999999 9999999999999988
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7544
No 115
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=6.1e-17 Score=137.62 Aligned_cols=80 Identities=25% Similarity=0.465 Sum_probs=76.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++++++|+++|+.||.|.+|+++.|+ +|+++|||||+|.+.++|++|++ +++.++|+.|+|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56899999999999999999999999999999999998 99999999999999999999998 9999999999999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 116
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-17 Score=145.43 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=76.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||++++|++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+|++ +|+..|+||.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 56899999999999999999999999999997777788899999999999999999999999 99999999999999997
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
..
T Consensus 103 ~~ 104 (124)
T 1wel_A 103 KK 104 (124)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 117
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.5e-16 Score=140.38 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G-~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
...++|||+|||++++|++|+++|+.|| .|..+++.. ++++|||||+|.+.++|++|++.|||..|+||.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 899998853 35799999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
++...
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 97543
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=132.90 Aligned_cols=78 Identities=27% Similarity=0.501 Sum_probs=70.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeCCEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGP-VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG-YEINGRQLRV 80 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~-V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng-~~I~GR~LrV 80 (551)
....++|||+|||++++|++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|+|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 5555552 379999999999999999999999 9999999999
Q ss_pred EeecCCC
Q 008851 81 DFAENDK 87 (551)
Q Consensus 81 ~~A~~~~ 87 (551)
++++++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998654
No 119
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=134.06 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=72.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
++|||+|||+++++++|+++|+.||.|.+|+++.| ++|||||+|.+.++|.+|++.|++..++|+.|+|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6899999999999999999999999999999999999876
Q ss_pred C
Q 008851 87 K 87 (551)
Q Consensus 87 ~ 87 (551)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 120
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=1.7e-17 Score=151.87 Aligned_cols=81 Identities=20% Similarity=0.367 Sum_probs=75.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++||++|+++|+.|| |++|+|++|++ |+++|||||+|.+.++|++|+ .+|+..|+||.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3578999999999999999999999999 77999999986 999999999999999999999 78999999999999998
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 121
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=137.21 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYE--INGRQLRV 80 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~--I~GR~LrV 80 (551)
..++++|||+|||+++||++|+++|+.||.|.++++++ .||||||+|.+.++|.+|++.|++.. |+||+|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35789999999999999999999999999999999974 37999999999999999999998864 88999999
Q ss_pred EeecCC
Q 008851 81 DFAEND 86 (551)
Q Consensus 81 ~~A~~~ 86 (551)
+|++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 122
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=8.7e-17 Score=146.60 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=76.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGP---VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRV 80 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~---V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV 80 (551)
...++|||+|||+++||++|+++|+.||. |.+|+|++|++ |+++|||||+|.+.++|++|++ +|+..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45789999999999999999999999999 89999999987 9999999999999999999999 9999999999999
Q ss_pred EeecC
Q 008851 81 DFAEN 85 (551)
Q Consensus 81 ~~A~~ 85 (551)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99864
No 123
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=133.30 Aligned_cols=78 Identities=21% Similarity=0.431 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC--CEEEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN--GRQLRVD 81 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~--GR~LrV~ 81 (551)
.+.++|||+|||++++|++|+++|+.||.|++|++..+ +|||||+|.+.++|++|++.||+..|+ |+.|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 46789999999999999999999999999999998753 789999999999999999999999999 9999999
Q ss_pred eecCCC
Q 008851 82 FAENDK 87 (551)
Q Consensus 82 ~A~~~~ 87 (551)
|++++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998753
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=4.6e-17 Score=133.25 Aligned_cols=73 Identities=29% Similarity=0.498 Sum_probs=68.6
Q ss_pred CcEEEEecCCCCC------CHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EE
Q 008851 6 HRCVFVGNIPYDA------TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR-QL 78 (551)
Q Consensus 6 srtVFVGNLP~d~------TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR-~L 78 (551)
+++|||+|||+++ ++++|+++|++||.|.+|++. +.+|+++|||||+|.+.++|.+|++.|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999987 46899999999999999999999999999999999 88
Q ss_pred EE
Q 008851 79 RV 80 (551)
Q Consensus 79 rV 80 (551)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 125
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.1e-16 Score=135.23 Aligned_cols=78 Identities=17% Similarity=0.396 Sum_probs=71.7
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 3 SSQHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 3 ~~~srtVFVGNLP~-d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
.++.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|++..++|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34789999999999 99999999999999999999984 7999999999999999999999999999999999
Q ss_pred eecCCCC
Q 008851 82 FAENDKG 88 (551)
Q Consensus 82 ~A~~~~~ 88 (551)
++.....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9987543
No 126
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=141.49 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=72.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ--GYEINGRQLRV 80 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln--g~~I~GR~LrV 80 (551)
..++++|||+|||++++|++|+++|+.||.|++|+|+.+ ||||||+|.+.++|.+|++.|+ +..|+|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 457899999999999999999999999999999999875 7999999999999999999887 46899999999
Q ss_pred EeecCCC
Q 008851 81 DFAENDK 87 (551)
Q Consensus 81 ~~A~~~~ 87 (551)
+|++.+.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9998654
No 127
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=2.9e-16 Score=145.70 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=76.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|+++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 458999999999999999999999999999999999999999999999999999999999976 7999999999999998
Q ss_pred CCCCC
Q 008851 85 NDKGA 89 (551)
Q Consensus 85 ~~~~~ 89 (551)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76543
No 128
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=5.2e-16 Score=139.56 Aligned_cols=81 Identities=28% Similarity=0.543 Sum_probs=78.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
+++|||+|||++++|++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|++..++|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 008851 86 D 86 (551)
Q Consensus 86 ~ 86 (551)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=3.6e-16 Score=149.71 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=78.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+.++|||||||+++||++|+++|++||.|++|+|++|+.||+++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 130
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=133.67 Aligned_cols=78 Identities=33% Similarity=0.531 Sum_probs=72.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|++|++..+ +|||||+|.+.++|.+|++.|++..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999754 799999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
+...
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8643
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=2.9e-16 Score=135.61 Aligned_cols=75 Identities=27% Similarity=0.454 Sum_probs=70.4
Q ss_pred CCcEEEEecCCCC-CCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 5 QHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~d-~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
..++|||+|||++ ++|++|+++|+.||.|.+|++ ++|||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4899999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
+..+
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
No 132
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5e-16 Score=139.51 Aligned_cols=81 Identities=28% Similarity=0.580 Sum_probs=78.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++++++|+++|+.||.|.+++++.|+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=134.06 Aligned_cols=79 Identities=25% Similarity=0.452 Sum_probs=72.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|||+++++++|+++|+.||.|..+ ..+|+++|||||+|.+.++|.+|++.|++..|+|+.|+|+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 357899999999999999999999999988766 357999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
.++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7643
No 134
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=133.45 Aligned_cols=79 Identities=34% Similarity=0.503 Sum_probs=72.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++++++|+++|+.||.|. ++++. ++++|||||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3478999999999999999999999999997 67765 467999999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
++++
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 135
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=129.07 Aligned_cols=77 Identities=27% Similarity=0.507 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||+++++++|+++|+.||.|.+|+++ ++||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4568999999999999999999999999999999997 45999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+....
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98653
No 136
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=141.96 Aligned_cols=82 Identities=20% Similarity=0.392 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLI----EICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLr----e~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~L 78 (551)
..++++|||+||++++++++|+ ++|++||.|++|.+. .+|+++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3467899999999999999876 699999999998875 368999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 008851 79 RVDFAENDK 87 (551)
Q Consensus 79 rV~~A~~~~ 87 (551)
+|+||+.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998654
No 137
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=3.3e-16 Score=136.13 Aligned_cols=77 Identities=25% Similarity=0.485 Sum_probs=72.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++++++|+++|+.||.|++|+++ +|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 467999999999999999999999999999999987 799999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
+....
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87543
No 138
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=4.7e-16 Score=140.56 Aligned_cols=83 Identities=27% Similarity=0.548 Sum_probs=79.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
++++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|++..++|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 139
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=7e-16 Score=131.29 Aligned_cols=76 Identities=18% Similarity=0.430 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 3 SSQHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 3 ~~~srtVFVGNLP~-d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
.+++++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.||+..++|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999998 99999999999999999999983 7999999999999999999999999999999999
Q ss_pred eecCC
Q 008851 82 FAEND 86 (551)
Q Consensus 82 ~A~~~ 86 (551)
+++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99764
No 140
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=127.71 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL-QGYEINGRQLRVD 81 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~L-ng~~I~GR~LrV~ 81 (551)
....++|||+|||+++++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.| ++..++|+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 346789999999999999999999999999999999864 799999999999999999988 9999999999999
Q ss_pred eec
Q 008851 82 FAE 84 (551)
Q Consensus 82 ~A~ 84 (551)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 141
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=8.6e-17 Score=145.08 Aligned_cols=85 Identities=22% Similarity=0.320 Sum_probs=74.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFR--L---VIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vr--L---v~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~L 78 (551)
.++++|||+|||+++|+++|+++|+.||.|..|. + +....+|+++|||||+|.+.++|.+|++.||+..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4678999999999999999999999999987751 1 1123579999999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 008851 79 RVDFAENDKG 88 (551)
Q Consensus 79 rV~~A~~~~~ 88 (551)
+|++|+....
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999986543
No 142
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-17 Score=140.47 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGP---VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~---V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~Lr 79 (551)
....++|||+|||+++||++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++|++ +++..|+||.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999988 89999999987 9999999999999999999998 999999999999
Q ss_pred EEeecCC
Q 008851 80 VDFAEND 86 (551)
Q Consensus 80 V~~A~~~ 86 (551)
|.++...
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998753
No 143
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=4.9e-16 Score=134.74 Aligned_cols=82 Identities=24% Similarity=0.492 Sum_probs=75.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
...+++|||+|||+++++++|+++|+.||.|.+|+++.| ++++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456899999999999999999999999999999999865 55699999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98643
No 144
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5e-16 Score=136.34 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=73.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++|||+|||++++|++|+++|+.| .|++|+|++|++ |+++|||||+|.+.++|++|+ .+|+..|+||.|+|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 5789999999999999999999999 899999999986 999999999999999999999 6999999999999998865
Q ss_pred C
Q 008851 86 D 86 (551)
Q Consensus 86 ~ 86 (551)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=9.2e-16 Score=144.38 Aligned_cols=83 Identities=27% Similarity=0.492 Sum_probs=79.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++++++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|+|+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
...
T Consensus 204 ~~~ 206 (216)
T 2qfj_A 204 TPP 206 (216)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 146
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=1.2e-15 Score=141.84 Aligned_cols=84 Identities=32% Similarity=0.572 Sum_probs=80.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++++++|+++|+.||.|.+|++..|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 147
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=5.2e-16 Score=146.63 Aligned_cols=82 Identities=18% Similarity=0.411 Sum_probs=78.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
..+++|||+|||+++++++|+++|+.||.|++|+|++|+ +|+++|||||+|.+.++|.+|++.|++..|+|+.|+|+||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 357899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCC
Q 008851 84 END 86 (551)
Q Consensus 84 ~~~ 86 (551)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 764
No 148
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.2e-15 Score=127.24 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|+ ++++++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.|++..|+|+.|+|+|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 36789999995 99999999999999999999984 56899999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
..+..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87543
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.2e-15 Score=141.51 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=77.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++||++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4578999999999999999999999999999999999999999999999999999999999976 889999999999998
Q ss_pred cCC
Q 008851 84 END 86 (551)
Q Consensus 84 ~~~ 86 (551)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 754
No 150
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=1.1e-15 Score=138.90 Aligned_cols=80 Identities=34% Similarity=0.603 Sum_probs=77.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|+||.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999973
No 151
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.3e-16 Score=140.44 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=72.2
Q ss_pred cEEEEecC----CCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 008851 7 RCVFVGNI----PYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKD----EET----ALSARR--NLQGYE 72 (551)
Q Consensus 7 rtVFVGNL----P~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d----~e~----A~sAi~--~Lng~~ 72 (551)
+.|||||| +|.++|++|+++|+.||+|.+|+++.|++||+++|||||+|.| .++ |.+|++ .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred eCCEEEEEEeecC
Q 008851 73 INGRQLRVDFAEN 85 (551)
Q Consensus 73 I~GR~LrV~~A~~ 85 (551)
|+||.|+|++.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 152
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-16 Score=140.03 Aligned_cols=80 Identities=21% Similarity=0.310 Sum_probs=74.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCe----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPV----VSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V----~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~Lr 79 (551)
.+.++|||+||||++||++|+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|++|++. |+..|+||.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999986 689999995 899999999999999999999986 99999999999
Q ss_pred EEeecC
Q 008851 80 VDFAEN 85 (551)
Q Consensus 80 V~~A~~ 85 (551)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 999864
No 153
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=6.9e-16 Score=140.23 Aligned_cols=79 Identities=28% Similarity=0.515 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
...++|||+|||+++++++|+++|+.||.|.+|+++.| ++|||||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35789999999999999999999999999999999876 5899999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
.+++
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 154
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=5.9e-16 Score=135.63 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE-----EE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ-----LR 79 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~-----Lr 79 (551)
..++|||+|||++++|++|+++|+.||.|++|.|+.| |||||+|.+.++|++|++.||+..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4688999999999999999999999999999999865 99999999999999999999999999988 77
Q ss_pred EEeecCC
Q 008851 80 VDFAEND 86 (551)
Q Consensus 80 V~~A~~~ 86 (551)
|+.+...
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7776653
No 155
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.2e-16 Score=137.58 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=71.1
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEEE
Q 008851 3 SSQHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ--GYEINGRQLR 79 (551)
Q Consensus 3 ~~~srtVFVGNLP~d-~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln--g~~I~GR~Lr 79 (551)
..++++|||+|||++ ++|++|+++|+.||.|.+|+|++ .||||||+|.+.++|.+|++.|+ +..|+||.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457899999999998 99999999999999999999973 37999999999999999999885 4569999999
Q ss_pred EEeecCCC
Q 008851 80 VDFAENDK 87 (551)
Q Consensus 80 V~~A~~~~ 87 (551)
|+|+....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997643
No 156
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.6e-16 Score=128.88 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=72.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEE-EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFR-LVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vr-Lv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
..++|||+|||+++++++|+++|+.||.|.+|+ ++.|+.+|+ |||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 478999999999999999999999999999994 888876544 999999999999999999999999999999999
Q ss_pred cCC
Q 008851 84 END 86 (551)
Q Consensus 84 ~~~ 86 (551)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 875
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.6e-15 Score=126.14 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
+..+++|||+|||++++|++|+++|++| .|.++++. +++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3467899999999999999999999999 99999884 5689999999999999999999999999999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
+..+
T Consensus 75 a~~~ 78 (88)
T 1wg1_A 75 QPTD 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9754
No 158
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.8e-16 Score=127.29 Aligned_cols=79 Identities=27% Similarity=0.357 Sum_probs=68.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..++++|||+|||++++|++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++|+.. .+.++|+.|+|++
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISN 74 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEe
Confidence 457899999999999999999999999999999999865 689999999999999865432 3566999999999
Q ss_pred ecCCCC
Q 008851 83 AENDKG 88 (551)
Q Consensus 83 A~~~~~ 88 (551)
+.++..
T Consensus 75 a~~~~~ 80 (88)
T 1wf0_A 75 AEPKHN 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 986543
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=9.1e-16 Score=138.82 Aligned_cols=80 Identities=23% Similarity=0.475 Sum_probs=76.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++ +++..|+|+.|+|+||.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5789999999999999999999999999999999999999999999999999999999997 899999999999999976
Q ss_pred C
Q 008851 86 D 86 (551)
Q Consensus 86 ~ 86 (551)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=6.7e-16 Score=139.30 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=72.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVV--SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~--~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
...++|||+|||+++||++|+++|+.| .|+ +|+|++|++ |+++|||||+|.+.++|++|++. ++..|+||.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 357899999999999999999999999 677 999999987 99999999999999999999985 7799999999999
Q ss_pred eecC
Q 008851 82 FAEN 85 (551)
Q Consensus 82 ~A~~ 85 (551)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8864
No 161
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=132.92 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++++++|+++|+.||.|.+|++.. .+|||||+|.+.++|.+|++.||+..|+|+.|+|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999864 47899999999999999999999999999999999998
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 162
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=132.26 Aligned_cols=80 Identities=29% Similarity=0.430 Sum_probs=72.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRET---GKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~T---GksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~Lr 79 (551)
....++|||+|||++++|++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34679999999999999999999999999999 889988887 8999999999999999999999985 68899888
Q ss_pred EEeecC
Q 008851 80 VDFAEN 85 (551)
Q Consensus 80 V~~A~~ 85 (551)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 876553
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.9e-15 Score=133.00 Aligned_cols=80 Identities=28% Similarity=0.530 Sum_probs=74.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
++|||+|||++++|++|+++|+.||.|.+++++.|+ +|+++|||||+|.+.++|.+|++.|++..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999997 4889999999999999999999999999999999999998754
Q ss_pred C
Q 008851 87 K 87 (551)
Q Consensus 87 ~ 87 (551)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.59 E-value=2.6e-15 Score=141.31 Aligned_cols=81 Identities=30% Similarity=0.465 Sum_probs=74.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
+.++|||+|||+++||++|+++|+.||.|++|++++|+.+|+++|||||+|.+.++|.+|++.|++..|+|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 008851 85 N 85 (551)
Q Consensus 85 ~ 85 (551)
.
T Consensus 107 ~ 107 (216)
T 2qfj_A 107 N 107 (216)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=4.3e-15 Score=142.24 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=75.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||++++|++|+++|+.||.|++|+|++|+ +.++|||||+|.+.++|.+|++.|||..|+|+.|+|++|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35789999999999999999999999999999999986 4579999999999999999999999999999999999998
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=5.1e-15 Score=133.71 Aligned_cols=80 Identities=30% Similarity=0.489 Sum_probs=76.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING--RQLRVD 81 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G--R~LrV~ 81 (551)
...++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++.||+..++| ++|+|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 357899999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred ee
Q 008851 82 FA 83 (551)
Q Consensus 82 ~A 83 (551)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 167
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=3.2e-15 Score=125.57 Aligned_cols=76 Identities=28% Similarity=0.376 Sum_probs=63.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCEEEEE
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY--EINGRQLRV 80 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~--~I~GR~LrV 80 (551)
....++|||||||+++||++|+++|++||.|++|++++| +||||||+|.+.++|++ +++. .++|+.|+|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 456789999999999999999999999999999999874 69999999999999884 3444 457999999
Q ss_pred EeecCCC
Q 008851 81 DFAENDK 87 (551)
Q Consensus 81 ~~A~~~~ 87 (551)
++|.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9998653
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=6.6e-15 Score=132.28 Aligned_cols=79 Identities=25% Similarity=0.526 Sum_probs=75.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE--EEEEe
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ--LRVDF 82 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~--LrV~~ 82 (551)
..++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++.|||..++|+. |+|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999975 88888
Q ss_pred e
Q 008851 83 A 83 (551)
Q Consensus 83 A 83 (551)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=6.1e-15 Score=121.11 Aligned_cols=73 Identities=27% Similarity=0.587 Sum_probs=67.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREV----G-------PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY 71 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~----G-------~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~ 71 (551)
+.+.++|||+|||+++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3467999999999999999999999999 8 8999998754 799999999999999999 99999
Q ss_pred eeCCEEEEEEe
Q 008851 72 EINGRQLRVDF 82 (551)
Q Consensus 72 ~I~GR~LrV~~ 82 (551)
.|+|+.|+|++
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999974
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=7.4e-15 Score=133.23 Aligned_cols=83 Identities=24% Similarity=0.434 Sum_probs=76.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETG--KPKGYGFCEYKDEETALSARRNLQGYEIN---GRQL 78 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TG--ksKGyAFVEF~d~e~A~sAi~~Lng~~I~---GR~L 78 (551)
+++++|||+|||++++|++|+++|+.||.|.+|++++|+.+| +++|||||+|.+.++|.+|++.|++..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 367999999999999999999999999999999999999887 89999999999999999999999998775 6778
Q ss_pred EEEeecCC
Q 008851 79 RVDFAEND 86 (551)
Q Consensus 79 rV~~A~~~ 86 (551)
.+.++...
T Consensus 81 ~~~~~~~~ 88 (175)
T 3nmr_A 81 QMKPADSE 88 (175)
T ss_dssp EEEECGGG
T ss_pred EEcccccc
Confidence 88887654
No 171
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=3.8e-15 Score=134.70 Aligned_cols=79 Identities=22% Similarity=0.458 Sum_probs=74.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
++++|||+|||+++||++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|.+|++. +..++|+.|+|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999985 569999999999986
Q ss_pred C
Q 008851 85 N 85 (551)
Q Consensus 85 ~ 85 (551)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 5
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=1.1e-14 Score=137.27 Aligned_cols=78 Identities=24% Similarity=0.324 Sum_probs=70.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEee
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING--RQLRVDFA 83 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G--R~LrV~~A 83 (551)
..+|||+||++++||++|+++|++||.|++|++..+ +.+|||||+|.+.++|++|++.|||..|.| +.|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 356899999999999999999999999999998643 257999999999999999999999999965 99999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
+.+.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8754
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.2e-14 Score=143.37 Aligned_cols=83 Identities=19% Similarity=0.449 Sum_probs=76.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 008851 2 ASSQHRCVFVGNIPYDATEEQLI----EICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ 77 (551)
Q Consensus 2 a~~~srtVFVGNLP~d~TEEeLr----e~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~ 77 (551)
+..++++|||+|||++++|++|+ ++|+.||.|++|++++ +|+++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44678999999999999999976 8999999999999875 7899999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 008851 78 LRVDFAENDK 87 (551)
Q Consensus 78 LrV~~A~~~~ 87 (551)
|+|+|++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997543
No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=129.85 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=71.2
Q ss_pred CCCCcEEEE--ecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----CC
Q 008851 3 SSQHRCVFV--GNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI-----NG 75 (551)
Q Consensus 3 ~~~srtVFV--GNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I-----~G 75 (551)
..+.++||| |||+++++|++|+++|++||.|.+|.+..+ ||||||+|.+.++|++|++.|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 446789999 779999999999999999999999987632 79999999999999999999999998 78
Q ss_pred EEEEEEeecCCC
Q 008851 76 RQLRVDFAENDK 87 (551)
Q Consensus 76 R~LrV~~A~~~~ 87 (551)
+.|.|+|+....
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999998543
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=1.2e-14 Score=131.82 Aligned_cols=79 Identities=20% Similarity=0.390 Sum_probs=74.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN---GRQLRVD 81 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~---GR~LrV~ 81 (551)
..++|||+|||+++++++|+++|+.||.|.++++..|+ +|+++|||||+|.+.++|.+|++.|||..+. |++|+|+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56899999999999999999999999999999999996 5999999999999999999999999998775 4999999
Q ss_pred eec
Q 008851 82 FAE 84 (551)
Q Consensus 82 ~A~ 84 (551)
||+
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=3.3e-14 Score=129.26 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=69.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEee
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGY-GFCEYKDEETALSARRNLQGYEING--RQLRVDFA 83 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGy-AFVEF~d~e~A~sAi~~Lng~~I~G--R~LrV~~A 83 (551)
-+|||+||++.+||++|+++|++||.|.+|++..+. +|| |||+|.+.++|++|++.|||..|.| +.|+|+|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 457899999999999999999999999999887542 687 9999999999999999999999988 99999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8753
No 177
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.8e-14 Score=138.71 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=73.6
Q ss_pred CCCcEEEEecCC-CCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 4 SQHRCVFVGNIP-YDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP-~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
.++++|||+||+ +++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 899999999999999999999998763 79999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
++...
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97543
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=3.7e-14 Score=123.53 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=75.3
Q ss_pred CCCCcEEEEecCCC-----CCCHHHHHHHHHcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 008851 3 SSQHRCVFVGNIPY-----DATEEQLIEICREVGPVVSFRLVIDRET-GKPKGYGFCEYKDEETALSARRNLQGYEINGR 76 (551)
Q Consensus 3 ~~~srtVFVGNLP~-----d~TEEeLre~Fs~~G~V~~vrLv~Dr~T-GksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR 76 (551)
..++++|+|.|+-. +-++++|+++|++||.|.+|+|.+|+++ ++++|||||+|.+.++|.+|++.|||..++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35789999999963 2368999999999999999999998765 68999999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 008851 77 QLRVDFAEND 86 (551)
Q Consensus 77 ~LrV~~A~~~ 86 (551)
.|+|+++...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999999753
No 179
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=2.4e-14 Score=127.19 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+.++|||+|+ +++|++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.|++..|+|+.|+|+|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999995 79999999999999999999985 56899999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
.....
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87543
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=2.8e-14 Score=130.52 Aligned_cols=77 Identities=26% Similarity=0.469 Sum_probs=71.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++++++|+++|+.||.|..+ ..+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+||.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46899999999999999999999999988766 4689999999999999999999999999999999999999997
Q ss_pred CC
Q 008851 85 ND 86 (551)
Q Consensus 85 ~~ 86 (551)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=5.5e-14 Score=134.37 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=72.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 85 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~ 85 (551)
.++|||+|||+++++++|+++|+.||.|.+|++.+|+ +|+++|||||+|.+.++|.+|++.++ ..|+|+.|+|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4789999999999999999999999999999999987 59999999999999999999997654 599999999999764
No 182
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.1e-14 Score=121.70 Aligned_cols=75 Identities=20% Similarity=0.415 Sum_probs=67.2
Q ss_pred CCCcE-EEEecCCCCCCHHH----HHHHHHcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 008851 4 SQHRC-VFVGNIPYDATEEQ----LIEICREV-GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQ 77 (551)
Q Consensus 4 ~~srt-VFVGNLP~d~TEEe----Lre~Fs~~-G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~ 77 (551)
+++.+ |||+|||+++++++ |+++|+.| |+|.+| || |+|||+|.+.++|.+|++.|+|..+.||.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 35666 99999999999988 55899999 599998 34 99999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 008851 78 LRVDFAENDKG 88 (551)
Q Consensus 78 LrV~~A~~~~~ 88 (551)
|+|+||+.+..
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999987643
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.50 E-value=1e-13 Score=136.97 Aligned_cols=84 Identities=31% Similarity=0.544 Sum_probs=79.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
+..++|||+|||+++++++|+++|+.||.|.+++++.|+.+|+++|||||+|.+.++|.+|++.|++..|+|+.|+|+++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
....
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7643
No 184
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=6.9e-14 Score=125.92 Aligned_cols=74 Identities=24% Similarity=0.424 Sum_probs=66.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEeec
Q 008851 8 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGY-GFCEYKDEETALSARRNLQGYEING--RQLRVDFAE 84 (551)
Q Consensus 8 tVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGy-AFVEF~d~e~A~sAi~~Lng~~I~G--R~LrV~~A~ 84 (551)
.|||+||++.+++++|+++|+.||.|.+|++.. + .|| |||+|.+.++|.+|++.|||..|.| +.|+|++|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 368999999999999999999999999999864 2 386 9999999999999999999999987 689999998
Q ss_pred CCC
Q 008851 85 NDK 87 (551)
Q Consensus 85 ~~~ 87 (551)
.+.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.49 E-value=6.2e-14 Score=139.01 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=76.0
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHHHcCCCeeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 4 SQHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRE-TGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 4 ~~srtVFVGNLP~d-~TEEeLre~Fs~~G~V~~vrLv~Dr~-TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
...++|||+|||++ +++++|+++|+.||.|.+|+++.|.. ||+++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 35689999999999 99999999999999999999999887 7999999999999999999999 999999999999999
Q ss_pred eecCC
Q 008851 82 FAEND 86 (551)
Q Consensus 82 ~A~~~ 86 (551)
|+.++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99864
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.49 E-value=9e-14 Score=137.17 Aligned_cols=75 Identities=28% Similarity=0.488 Sum_probs=71.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~-GR~LrV~~A 83 (551)
++++|||+|||+++++++|+++|+.||.|++|+++.++ +|||||+|.+.++|.+|++.|||..|+ |+.|+|+|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 57899999999999999999999999999999998664 689999999999999999999999999 999999998
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=1.4e-14 Score=132.49 Aligned_cols=82 Identities=20% Similarity=0.362 Sum_probs=74.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 3 SSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
..+.++|||+|||++++|++|+++|+.||.+.. .++.+..+|+++|||||+|.+.++|.+|+ .|++..|+|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 457899999999999999999999999998776 44556678999999999999999999999 5999999999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
+...
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9764
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.48 E-value=1.2e-13 Score=136.55 Aligned_cols=83 Identities=25% Similarity=0.430 Sum_probs=78.1
Q ss_pred CCCcEEEEecCCCCC-CHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 4 SQHRCVFVGNIPYDA-TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~d~-TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
...++|||+|||+++ ++++|+++|+.||.|.++++..|+ +|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 357899999999995 999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred ecCCC
Q 008851 83 AENDK 87 (551)
Q Consensus 83 A~~~~ 87 (551)
+.++.
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 98654
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.2e-13 Score=133.47 Aligned_cols=78 Identities=18% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCC-CCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEe
Q 008851 4 SQHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 82 (551)
Q Consensus 4 ~~srtVFVGNLP~-d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~ 82 (551)
.++++|||+|||+ +++|++|+++|+.||.|.+|++++|+ +|||||+|.+.++|.+|++.|++..|+|+.|+|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4689999999999 99999999999999999999999875 89999999999999999999999999999999999
Q ss_pred ecCC
Q 008851 83 AEND 86 (551)
Q Consensus 83 A~~~ 86 (551)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.8e-13 Score=117.02 Aligned_cols=81 Identities=25% Similarity=0.381 Sum_probs=70.3
Q ss_pred CCCCcEEEEecCCCCCC-----------HHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 008851 3 SSQHRCVFVGNIPYDAT-----------EEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY 71 (551)
Q Consensus 3 ~~~srtVFVGNLP~d~T-----------EEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~ 71 (551)
..++++|+|.||-...+ +++|+++|++||.|.+|.| .|+ .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34689999999944332 5899999999999999965 564 37999999999999999999999999
Q ss_pred eeCCEEEEEEeecCCC
Q 008851 72 EINGRQLRVDFAENDK 87 (551)
Q Consensus 72 ~I~GR~LrV~~A~~~~ 87 (551)
.|+||.|+|+++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999998654
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=127.60 Aligned_cols=78 Identities=18% Similarity=0.369 Sum_probs=73.1
Q ss_pred CCcEEEEecCCC-CCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 5 QHRCVFVGNIPY-DATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~-d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
.+++|||+|||+ ++++++|+++|+.||.|.+|++++|+ +|||||+|.+.++|.+|++.|++..|+|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998875 789999999999999999999999999999999999
Q ss_pred cCCC
Q 008851 84 ENDK 87 (551)
Q Consensus 84 ~~~~ 87 (551)
....
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8653
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.42 E-value=6.1e-14 Score=130.19 Aligned_cols=75 Identities=25% Similarity=0.577 Sum_probs=66.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREV----G-------PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~----G-------~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
.+++|||+|||++++|++|+++|+.| | .|.++++ ++++|||||+|.+.++|.+|+ .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57999999999999999999999999 4 5555554 566899999999999999999 8999999
Q ss_pred CCEEEEEEeecCC
Q 008851 74 NGRQLRVDFAEND 86 (551)
Q Consensus 74 ~GR~LrV~~A~~~ 86 (551)
+|+.|+|+++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998764
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.41 E-value=4.1e-13 Score=133.11 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=71.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G-~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A 83 (551)
..++|||+|||+++++++|+++|+.|| .|.+|+++.|+. |+++|||||+|.+.++|.+|++.|++..|+|+.|+|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999876 889999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008851 84 ENDKG 88 (551)
Q Consensus 84 ~~~~~ 88 (551)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 86543
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=6.2e-13 Score=131.17 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=74.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceeC---CEEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ-GYEIN---GRQLRV 80 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln-g~~I~---GR~LrV 80 (551)
++++|||+|||+++|+++|+++|+.||.|.+|+++.| .+|+++|||||+|.+.++|.+|++.|+ +..+. ||.|+|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4689999999999999999999999999999999999 589999999999999999999999995 44444 999999
Q ss_pred EeecCCC
Q 008851 81 DFAENDK 87 (551)
Q Consensus 81 ~~A~~~~ 87 (551)
+++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9998643
No 195
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=3.2e-13 Score=134.31 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=70.7
Q ss_pred CCCcEEEEecCCCCC---------CHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-
Q 008851 4 SQHRCVFVGNIPYDA---------TEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI- 73 (551)
Q Consensus 4 ~~srtVFVGNLP~d~---------TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I- 73 (551)
...++||||||++++ +|++|+++|+.||.|.+|+|+.+ ||||||+|.+.++|+.|++.|++..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 357899999999998 79999999999999999999853 79999999999999999999999999
Q ss_pred -----------CCEEEEEEeecCCCC
Q 008851 74 -----------NGRQLRVDFAENDKG 88 (551)
Q Consensus 74 -----------~GR~LrV~~A~~~~~ 88 (551)
+|+.|+|+||+.+..
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987543
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.40 E-value=4e-13 Score=129.23 Aligned_cols=77 Identities=22% Similarity=0.416 Sum_probs=69.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCe--eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE----EE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPV--VSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGR----QL 78 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V--~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR----~L 78 (551)
++++|||+|||+++||++|+++|+.||.| +++++..|+ |+.+|||||+|.+.++|.+|+..||++.|+|+ ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 56789999999999999999999999999 899988775 66679999999999999999999999999886 56
Q ss_pred EEEee
Q 008851 79 RVDFA 83 (551)
Q Consensus 79 rV~~A 83 (551)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=8.2e-13 Score=114.88 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=73.5
Q ss_pred CCCcEEEEecC--CCCCC--------HHHHHHHHHcCCCeeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCc
Q 008851 4 SQHRCVFVGNI--PYDAT--------EEQLIEICREVGPVVSFRLVIDRET--GKPKGYGFCEYKDEETALSARRNLQGY 71 (551)
Q Consensus 4 ~~srtVFVGNL--P~d~T--------EEeLre~Fs~~G~V~~vrLv~Dr~T--GksKGyAFVEF~d~e~A~sAi~~Lng~ 71 (551)
.++++|.|.|+ +.+.. +++|++.|++||.|.+|+|.+|+++ ++++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47899999998 44443 3689999999999999999998865 478999999999999999999999999
Q ss_pred eeCCEEEEEEeecCC
Q 008851 72 EINGRQLRVDFAEND 86 (551)
Q Consensus 72 ~I~GR~LrV~~A~~~ 86 (551)
.++||.|+|+++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998754
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=4.1e-13 Score=125.56 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=71.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEe
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDF 82 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G-~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~-GR~LrV~~ 82 (551)
++++|||+|||+++++++|+++|+.|| .|.+++++.+. +|||||+|.+.++|.+|++.|||..|+ |+.|+|+|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 99999997542 799999999999999999999999999 99999999
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
+++
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 975
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=2.3e-13 Score=118.10 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=64.2
Q ss_pred EecCCCCCCHHHHHHHH------------HcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008851 11 VGNIPYDATEEQLIEIC------------REVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (551)
Q Consensus 11 VGNLP~d~TEEeLre~F------------s~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~L 78 (551)
+.||++++++++|++.| ++||.|.+|+|++|+. |+++|||||+|.+.++|.+|++.|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777887777666 9999999999998874 8999999999999999999999999999999999
Q ss_pred EEEee
Q 008851 79 RVDFA 83 (551)
Q Consensus 79 rV~~A 83 (551)
+|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=8.3e-13 Score=127.63 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=71.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEe
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVG-PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN-GRQLRVDF 82 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G-~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~-GR~LrV~~ 82 (551)
++++|||+|||+++++++|+++|+.|| .|.+|+++.+ .+|||||+|.+.++|.+|++.|+|..|+ |+.|+|+|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999999653 3799999999999999999999999999 99999999
Q ss_pred ecC
Q 008851 83 AEN 85 (551)
Q Consensus 83 A~~ 85 (551)
+++
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 975
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.38 E-value=1.1e-12 Score=129.42 Aligned_cols=75 Identities=31% Similarity=0.503 Sum_probs=70.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeec
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 84 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~ 84 (551)
..++|||+|||+++|+++|+++|+.||.|.+|++.+ .+|||||+|.+.++|.+|++.|++..|+|+.|+|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 468999999999999999999999999999999864 37999999999999999999999999999999999987
Q ss_pred C
Q 008851 85 N 85 (551)
Q Consensus 85 ~ 85 (551)
.
T Consensus 95 ~ 95 (261)
T 3sde_A 95 H 95 (261)
T ss_dssp C
T ss_pred c
Confidence 5
No 202
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.5e-12 Score=118.10 Aligned_cols=75 Identities=25% Similarity=0.571 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREV----G-------PVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~----G-------~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
++++|||+|||+++||++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 57899999999999999999999999 6 67777654 45899999999999999999 8999999
Q ss_pred CCEEEEEEeecCC
Q 008851 74 NGRQLRVDFAEND 86 (551)
Q Consensus 74 ~GR~LrV~~A~~~ 86 (551)
+|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987643
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.8e-12 Score=115.39 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=73.4
Q ss_pred CCCcEEEEecCC--CCC---CHHHHHHHHHcCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008851 4 SQHRCVFVGNIP--YDA---TEEQLIEICREVGPVVSFRLVIDRE----TGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (551)
Q Consensus 4 ~~srtVFVGNLP--~d~---TEEeLre~Fs~~G~V~~vrLv~Dr~----TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~ 74 (551)
+++++|+|.|+- .++ -+++|++.|++||.|.+|+|..|+. +++++||+||+|.+.++|.+|++.|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 368999999983 222 3689999999999999999999875 4678899999999999999999999999999
Q ss_pred CEEEEEEeecCC
Q 008851 75 GRQLRVDFAEND 86 (551)
Q Consensus 75 GR~LrV~~A~~~ 86 (551)
||.|+|+++...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999998753
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.1e-11 Score=104.58 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=63.6
Q ss_pred CcEEEEecCC-------CCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008851 6 HRCVFVGNIP-------YDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (551)
Q Consensus 6 srtVFVGNLP-------~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~L 78 (551)
.++|-|.... .+++|++|+++|++||.|++|+|+ ++++|||||+|.+.++|++|++.++ .+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4566665543 458999999999999999999987 4779999999999999999999865 4689999
Q ss_pred EEEeecCCC
Q 008851 79 RVDFAENDK 87 (551)
Q Consensus 79 rV~~A~~~~ 87 (551)
+|+|++...
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999988654
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=3.2e-11 Score=125.64 Aligned_cols=76 Identities=26% Similarity=0.425 Sum_probs=66.7
Q ss_pred CCCCcEEEEec--CCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCE-
Q 008851 3 SSQHRCVFVGN--IPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI---NGR- 76 (551)
Q Consensus 3 ~~~srtVFVGN--LP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I---~GR- 76 (551)
+.++++||||| |++++||++|+++|++||.|.+|.+.. .||||||+|.+.++|++|++.|||.++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45789999999 689999999999999999999987642 479999999999999999999999988 245
Q ss_pred -EEEEEeec
Q 008851 77 -QLRVDFAE 84 (551)
Q Consensus 77 -~LrV~~A~ 84 (551)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57888875
No 206
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=94.04 Aligned_cols=42 Identities=38% Similarity=0.611 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHhcCHHHHhcCChHHHHHHHHHHHHHHhhhc
Q 008851 507 PDVESALLQQVLSLTPEQLNSLPPEQRQQVIQLQQALLRDQM 548 (551)
Q Consensus 507 p~~~~~~~~qv~~l~~~q~~~lp~~q~~~v~~~~~~~~~~~~ 548 (551)
+++|.+||+|||+||||||..|||++|++|++||++|.+...
T Consensus 6 ~~~q~~Li~QVLsLt~eQI~~LPp~qR~qI~~LR~q~~~~~~ 47 (49)
T 2j8p_A 6 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTG 47 (49)
T ss_dssp HHTHHHHHHHHHTSCHHHHHTSCHHHHTHHHHHHHHHHCCCC
T ss_pred cccHHHHHHHHHhCCHHHHHhCCHHHHHHHHHHHHHHHhccC
Confidence 578999999999999999999999999999999999998654
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=1.7e-10 Score=102.09 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=67.3
Q ss_pred CCCcEEEEecCCCCCC----------HHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008851 4 SQHRCVFVGNIPYDAT----------EEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEI 73 (551)
Q Consensus 4 ~~srtVFVGNLP~d~T----------EEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I 73 (551)
-++++|.+.|+=.... +++|++.|++||.|.+|.|.++. .+|||||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4688899998733221 35789999999999999986542 489999999999999999999999999
Q ss_pred CCEEEEEEeecCC
Q 008851 74 NGRQLRVDFAEND 86 (551)
Q Consensus 74 ~GR~LrV~~A~~~ 86 (551)
+||.|+|+|+...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999999754
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=3.9e-09 Score=90.44 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=63.6
Q ss_pred CCCcEEEEecCC----CCCCH----HHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008851 4 SQHRCVFVGNIP----YDATE----EQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING 75 (551)
Q Consensus 4 ~~srtVFVGNLP----~d~TE----EeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G 75 (551)
+++-+|+|.-.+ .++-. .+|.+.|+.||.|+.++++.|+ +||+|.+.+.|.+|++ |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 567788888766 23433 5789999999999999999775 7999999999999998 99999999
Q ss_pred EEEEEEeecCC
Q 008851 76 RQLRVDFAEND 86 (551)
Q Consensus 76 R~LrV~~A~~~ 86 (551)
|.|+|++++++
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998864
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=2.9e-09 Score=95.64 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceeCCEEEE
Q 008851 4 SQHRCVFVGNIPYD-ATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKD-EETALSARRNLQ--GYEINGRQLR 79 (551)
Q Consensus 4 ~~srtVFVGNLP~d-~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d-~e~A~sAi~~Ln--g~~I~GR~Lr 79 (551)
..++.|||+||+++ +++++|+++|+.||.|.+|.+..|.. .|||+|.+ .++|..|++.++ +..|+|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 36789999999999 99999999999999999999988764 59999999 899999999995 6788998888
Q ss_pred EEeecC
Q 008851 80 VDFAEN 85 (551)
Q Consensus 80 V~~A~~ 85 (551)
++....
T Consensus 90 ~evL~G 95 (121)
T 1owx_A 90 WEVLEG 95 (121)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 887653
No 210
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=7.6e-09 Score=99.32 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHcCCCeeEEEEeec----CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEeecCC
Q 008851 18 ATEEQLIEICREVGPVVSFRLVID----RETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 86 (551)
Q Consensus 18 ~TEEeLre~Fs~~G~V~~vrLv~D----r~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~~A~~~ 86 (551)
-.+++|++.|++||.|.++.+..+ +++|+++|++||+|.+.++|.+|++.|||..++||.|+|.++...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 456889999999999999999855 456699999999999999999999999999999999999998753
No 211
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.7e-08 Score=87.08 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=62.5
Q ss_pred CCCcEEEEecCCCC-----CCH----HHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008851 4 SQHRCVFVGNIPYD-----ATE----EQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEIN 74 (551)
Q Consensus 4 ~~srtVFVGNLP~d-----~TE----EeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~ 74 (551)
+++-+|+|.-++.+ +.. .+|.+.|+.||.|+.++++.|+ +||+|.+.+.|.+|++ |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 56788999887643 322 4688999999999999999875 8999999999999998 9999999
Q ss_pred CEEEEEEeecC
Q 008851 75 GRQLRVDFAEN 85 (551)
Q Consensus 75 GR~LrV~~A~~ 85 (551)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998543
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=7.5e-06 Score=72.49 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=67.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcC-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREV-----GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLR 79 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~-----G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~Lr 79 (551)
..++|-+-|||..++++.|+.+++.+ |.++.+.++.|. |-|+|+|.|..+|.+|.-.|+|.+|+||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36889999999999999999999999 999999999874 6789999999999999999999999999999
Q ss_pred EEeec
Q 008851 80 VDFAE 84 (551)
Q Consensus 80 V~~A~ 84 (551)
|.-..
T Consensus 94 ~gTv~ 98 (117)
T 2l9w_A 94 SGTIN 98 (117)
T ss_dssp EECHH
T ss_pred ecCHH
Confidence 87543
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.0018 Score=56.62 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCcEEEEecCCCCCC-----HHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008851 4 SQHRCVFVGNIPYDAT-----EEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (551)
Q Consensus 4 ~~srtVFVGNLP~d~T-----EEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~L 78 (551)
.-.++++|.||+.++- .+.++++|..|+++..+...+.- .-..|.|.+.++|.+|-..||+..++|++|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 3457899999988763 25789999999999998877543 235789999999999999999999999999
Q ss_pred EEEeecC
Q 008851 79 RVDFAEN 85 (551)
Q Consensus 79 rV~~A~~ 85 (551)
+|-++..
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999874
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.65 E-value=0.012 Score=50.28 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=61.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCc--ceEEEEEeCCHHHHHHHHHHhCCceeC---C--EEEE
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKP--KGYGFCEYKDEETALSARRNLQGYEIN---G--RQLR 79 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGks--KGyAFVEF~d~e~A~sAi~~Lng~~I~---G--R~Lr 79 (551)
++|.|++||...||+++.+.++....+.....+..+.+.+. ..-|||.|.+.+++....+.++|+.+- | .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57899999999999999999999988877777654433332 356899999999999999999998772 2 2345
Q ss_pred EEeec
Q 008851 80 VDFAE 84 (551)
Q Consensus 80 V~~A~ 84 (551)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77764
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.57 E-value=0.016 Score=50.61 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHc-----CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 008851 4 SQHRCVFVGNIPYDATEEQLIEICRE-----VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 78 (551)
Q Consensus 4 ~~srtVFVGNLP~d~TEEeLre~Fs~-----~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~L 78 (551)
.-.++|.|.|||.+++++.|+-+|+. -|+|.+++... +-|+|+|.+.+.|++.++. ..+.|+|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45789999999999999999999986 25788877641 5689999999999999853 3578999889
Q ss_pred EEEeecC
Q 008851 79 RVDFAEN 85 (551)
Q Consensus 79 rV~~A~~ 85 (551)
.|.-..+
T Consensus 77 sV~P~~~ 83 (104)
T 2dhx_A 77 SLRPAPP 83 (104)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 8866543
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.99 E-value=0.017 Score=50.06 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=46.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~L 68 (551)
...++| ++|.+|...||.++|+.|| -..|+++.|- -|||.|.+.+.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 455666 9999999999999999999 5567777663 7999999999999999866
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.09 E-value=0.023 Score=49.35 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=46.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 008851 7 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ 69 (551)
Q Consensus 7 rtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln 69 (551)
..++| ++|.+|...+|..+|+.|| -..|+++.|- -|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 6677777663 69999999999999998764
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.72 E-value=0.17 Score=45.12 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=57.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-EEEEEEee
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEING-RQLRVDFA 83 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~G-R~LrV~~A 83 (551)
..+.|.|-++|.+. -..|.+.|++||.|++.... ....+-.|.|.+..+|++|+. .||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 36778888999885 56677889999999988751 124578999999999999995 69999975 66777776
Q ss_pred c
Q 008851 84 E 84 (551)
Q Consensus 84 ~ 84 (551)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.40 E-value=0.032 Score=49.98 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=29.5
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 008851 35 SFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGY 71 (551)
Q Consensus 35 ~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~ 71 (551)
.++|+.+. .+++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 46677765 478999999999999999999888754
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.95 E-value=0.083 Score=45.59 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=55.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCc--ceEEEEEeCCHHHHHHHHHHhCCceeC---C--EEE
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKP--KGYGFCEYKDEETALSARRNLQGYEIN---G--RQL 78 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGks--KGyAFVEF~d~e~A~sAi~~Lng~~I~---G--R~L 78 (551)
+-+|.|+.||...||+++.+.++.+-.+.....+..+.+-+. -.-|||.|.+.++...-.+.++|+.+- | .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457889999999999998888776555433333222222221 245799999999999999999998772 2 245
Q ss_pred EEEeec
Q 008851 79 RVDFAE 84 (551)
Q Consensus 79 rV~~A~ 84 (551)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 677764
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.71 E-value=0.035 Score=59.93 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=41.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 66 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~ 66 (551)
.++|||. .+.++++.+|.++|++||+|.++..-.++ .-|+.|||.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999998765543 3699999999999887754
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.92 E-value=0.036 Score=49.46 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=37.6
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEEEEEeecC
Q 008851 44 TGKPKGYGFCEYKDEETALSARRNL-QGYEINGRQLRVDFAEN 85 (551)
Q Consensus 44 TGksKGyAFVEF~d~e~A~sAi~~L-ng~~I~GR~LrV~~A~~ 85 (551)
..+.+|+++|||.+.++|++|++.+ |+..++| .++++++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4678999999999999999999999 9999999 999998765
No 223
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.41 E-value=0.48 Score=43.00 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=54.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeE-EEEeec--------CCCCC-----cceEEEEEeCCHHHHHHHHHHhCCc
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVS-FRLVID--------RETGK-----PKGYGFCEYKDEETALSARRNLQGY 71 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~-vrLv~D--------r~TGk-----sKGyAFVEF~d~e~A~sAi~~Lng~ 71 (551)
...|.|-+.|.+.. ..+-+.|++||.|++ +....+ +.+.+ ...+-.|.|.+..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45567778877754 456778999999876 321110 00011 24577899999999999995 6999
Q ss_pred eeCCEEEEEEeecC
Q 008851 72 EINGRQLRVDFAEN 85 (551)
Q Consensus 72 ~I~GR~LrV~~A~~ 85 (551)
.|+|..|-|...++
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888888764
No 224
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.79 E-value=3.6 Score=44.67 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=45.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 008851 6 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQ 69 (551)
Q Consensus 6 srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Ln 69 (551)
...++|+ ++..|...+|.+.|+.||. ++|+++.| ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4556665 9999999999999999994 56666644 379999999999999999885
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=44.19 E-value=1.5e+02 Score=25.30 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=56.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-------ceeCCEE
Q 008851 5 QHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG-------YEINGRQ 77 (551)
Q Consensus 5 ~srtVFVGNLP~d~TEEeLre~Fs~~G~V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng-------~~I~GR~ 77 (551)
..|-|-|-|||..+-..++.-..+..|---.|..+ .|-|.+.|.+.++..-|+..|-+ .+|.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 56778899999999998888778888877777765 46789999999999999987622 3567777
Q ss_pred EEEEeec
Q 008851 78 LRVDFAE 84 (551)
Q Consensus 78 LrV~~A~ 84 (551)
+.|-...
T Consensus 83 cdvisti 89 (129)
T 4eyt_A 83 CDVISTI 89 (129)
T ss_dssp EEEECCC
T ss_pred eeeeecC
Confidence 7665443
No 226
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=29.18 E-value=79 Score=24.58 Aligned_cols=68 Identities=10% Similarity=0.221 Sum_probs=40.3
Q ss_pred EEEEe-cCCCCCCHHHHHHHHHcCCC-----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 008851 8 CVFVG-NIPYDATEEQLIEICREVGP-----VVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVD 81 (551)
Q Consensus 8 tVFVG-NLP~d~TEEeLre~Fs~~G~-----V~~vrLv~Dr~TGksKGyAFVEF~d~e~A~sAi~~Lng~~I~GR~LrV~ 81 (551)
++||. +=-..++..+|..++..-+. |-.+++. | .|.||+-.. +.+..+++.|++..+.|+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-D-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-S-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-C-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 35552 22334566677777775443 4445553 2 377888764 45778888999999999999998
Q ss_pred eec
Q 008851 82 FAE 84 (551)
Q Consensus 82 ~A~ 84 (551)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 227
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=28.40 E-value=40 Score=31.62 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHH----hCCChHHHHHH
Q 008851 183 IMSEMKLMATQNKEQARQLLL----AKPPLLKALFQ 214 (551)
Q Consensus 183 iLsqLK~l~~~~P~~Ar~LL~----~NPQLa~AL~Q 214 (551)
.+.+|+.++.+||+....||. .||+|...|-|
T Consensus 34 qf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 34 DLLSLRQVVSGNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 455888899999999988888 99999887643
No 228
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=26.22 E-value=20 Score=27.93 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=31.8
Q ss_pred cCChHHHHHHHHHHHHHHh-hCHHHHHHHHHhCCChHHHHHH
Q 008851 174 KMSRNQLNEIMSEMKLMAT-QNKEQARQLLLAKPPLLKALFQ 214 (551)
Q Consensus 174 kl~p~QL~eiLsqLK~l~~-~~P~~Ar~LL~~NPQLa~AL~Q 214 (551)
.++...|-++|..||.=.. +.-.++-.+|+.||+|-.|...
T Consensus 4 ~~~~~aLqqLl~tlksp~speqqqqvl~ILksNPqLMAAfIK 45 (59)
T 1kbh_B 4 SISPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIK 45 (59)
T ss_dssp SSSTTHHHHHHHHHHSCTTTTCSTHHHHHHTTSHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4677888899988887443 2356789999999999888765
No 229
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=24.93 E-value=1e+02 Score=28.89 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=38.6
Q ss_pred EEEEecCCCC---------CCHHHHHHHH--HcCCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHH
Q 008851 8 CVFVGNIPYD---------ATEEQLIEIC--REVGPVVSFRLVIDRETGKPKGYGFCEYKD-EETALSARRN 67 (551)
Q Consensus 8 tVFVGNLP~d---------~TEEeLre~F--s~~G~V~~vrLv~Dr~TGksKGyAFVEF~d-~e~A~sAi~~ 67 (551)
.+.|-|++.+ ....+|++.| +.|.++. ++.++++ ..+.|++.|+|.. -.....|++.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHH
Confidence 4567788872 2346899977 9998876 5555554 3468999999984 4455566643
No 230
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=24.56 E-value=83 Score=29.11 Aligned_cols=36 Identities=36% Similarity=0.605 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHcCCCe---eEEEEeecCCCCCcceEEEE
Q 008851 18 ATEEQLIEICREVGPV---VSFRLVIDRETGKPKGYGFC 53 (551)
Q Consensus 18 ~TEEeLre~Fs~~G~V---~~vrLv~Dr~TGksKGyAFV 53 (551)
.|+++|+++-...|.+ +++++..|.++|+.+.|||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 4899999999999987 45667777558999999884
No 231
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=23.19 E-value=82 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhC-HHHHHHHHHhCC-ChHHHH
Q 008851 181 NEIMSEMKLMATQN-KEQARQLLLAKP-PLLKAL 212 (551)
Q Consensus 181 ~eiLsqLK~l~~~~-P~~Ar~LL~~NP-QLa~AL 212 (551)
-|+|+++..+.-.+ +++|+.+|..|- +|-.|+
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av 39 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAI 39 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHH
Confidence 36788888888755 799999999886 666554
Done!