Query 008852
Match_columns 551
No_of_seqs 294 out of 693
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 17:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2572 Ribosome biogenesis pr 100.0 2E-144 5E-149 1112.6 32.8 434 1-440 1-434 (498)
2 KOG2573 Ribosome biogenesis pr 100.0 2E-130 4E-135 1009.9 29.4 402 1-402 3-416 (498)
3 PRK14552 C/D box methylation g 100.0 3E-100 6E-105 807.0 34.1 369 1-397 1-376 (414)
4 COG1498 SIK1 Protein implicate 100.0 6.2E-97 1E-101 769.2 30.2 350 43-401 2-358 (395)
5 KOG2574 mRNA splicing factor P 100.0 1.3E-67 2.9E-72 547.2 13.4 274 142-430 89-364 (492)
6 PF01798 Nop: Putative snoRNA 100.0 7.4E-55 1.6E-59 406.2 7.3 149 251-399 1-150 (150)
7 PF08060 NOSIC: NOSIC (NUC001) 99.9 1.1E-22 2.5E-27 159.6 6.7 53 159-211 1-53 (53)
8 PF08156 NOP5NT: NOP5NT (NUC12 99.8 4.1E-20 8.8E-25 151.7 5.3 66 1-66 1-67 (67)
9 PF04286 DUF445: Protein of un 63.3 78 0.0017 32.7 11.1 40 257-296 283-322 (367)
10 KOG2014 SMT3/SUMO-activating c 59.1 18 0.0004 38.6 5.6 72 229-301 229-304 (331)
11 TIGR03060 PS_II_psb29 photosys 50.7 47 0.001 33.8 6.7 102 85-190 5-107 (214)
12 PLN03060 inositol phosphatase- 45.1 68 0.0015 32.5 6.9 102 86-191 4-106 (206)
13 PF10083 DUF2321: Uncharacteri 44.6 27 0.00059 33.9 3.8 34 48-81 76-111 (158)
14 PRK13266 Thf1-like protein; Re 40.4 62 0.0014 33.2 5.8 103 85-191 5-108 (225)
15 KOG2572 Ribosome biogenesis pr 38.0 16 0.00035 40.3 1.4 33 265-297 201-233 (498)
16 PF11264 ThylakoidFormat: Thyl 35.5 98 0.0021 31.6 6.3 101 87-191 2-103 (216)
17 KOG2573 Ribosome biogenesis pr 33.9 28 0.0006 38.6 2.3 15 101-115 62-76 (498)
18 PF10436 BCDHK_Adom3: Mitochon 33.4 74 0.0016 30.6 4.9 39 175-213 52-95 (164)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 32.0 55 0.0012 33.8 4.1 56 8-64 267-332 (352)
20 PLN00047 photosystem II biogen 30.6 1.1E+02 0.0023 32.6 5.8 104 83-190 54-158 (283)
21 COG5103 CDC39 Cell division co 26.9 1.5E+02 0.0032 37.5 6.8 58 251-309 1105-1175(2005)
22 PF11043 DUF2856: Protein of u 25.9 2.7E+02 0.0058 24.6 6.5 65 106-193 15-81 (97)
23 KOG1086 Cytosolic sorting prot 25.2 75 0.0016 35.7 3.7 33 244-300 21-53 (594)
24 PRK09772 transcriptional antit 23.9 6.4E+02 0.014 25.8 10.1 19 175-193 135-153 (278)
25 TIGR01589 A_thal_3526 uncharac 22.8 1E+02 0.0022 25.3 3.2 40 250-290 2-41 (57)
26 KOG3365 NADH:ubiquinone oxidor 22.6 45 0.00097 31.9 1.3 37 174-211 46-82 (145)
27 PF12896 Apc4: Anaphase-promot 20.8 7.3E+02 0.016 24.0 9.4 123 49-182 70-194 (210)
No 1
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-144 Score=1112.58 Aligned_cols=434 Identities=73% Similarity=1.055 Sum_probs=420.3
Q ss_pred CEEeeeccceeeEEEecCcCcccchhhHHHHhcCHHHhhccEEeeeeecCCCHHHHHHHHHHhhhcCCCHHHHHHHHhcC
Q 008852 1 MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHC 80 (551)
Q Consensus 1 m~vLfEt~~GyaLFkv~~~~~~~~~~~~~~~~~~~~~~~~~vkL~~f~~F~~~~~Al~~~~~i~eg~~~~~L~~fL~~~~ 80 (551)
|||||||++|||||++.|++++.++++||+.|.+++.+.++|+|++|.+|.+|.+||+++++|.||++|..|++||+.++
T Consensus 1 mlvL~Eta~Gya~fk~~de~kl~~v~~l~~ef~s~e~a~~~~kl~~f~kf~~ta~alea~~~l~eGkvs~~L~k~lk~~~ 80 (498)
T KOG2572|consen 1 MLVLFETAAGYALFKVLDEKKLANVDDLWKEFSSAEKALKMVKLVAFEKFDSTAEALEAVTALAEGKVSSGLEKFLKLNK 80 (498)
T ss_pred CeEEEeeccceeeeeecchhhHhhHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeccchhHHHHhhhCCccccchHHHHHHHHHHHhHHHHhcCCCCCChhhhhhhhhhhhhhhhhccccchhhHHH
Q 008852 81 DGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMI 160 (551)
Q Consensus 81 ~~~~L~V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~~I 160 (551)
.+++|+|+|+|||+.|+++|+|+|++++.|++++||||+|+++|++|+.++|+.+|+|||+|+++||||+|+|+||||||
T Consensus 81 ~~etLaVaD~KLgn~i~ekL~~~~v~~~~v~el~RgiRs~l~el~~g~~~~dl~~msLglaHslar~Klkfs~dKvDtmI 160 (498)
T KOG2572|consen 81 KKETLAVADAKLGNAIKEKLSINCVHDSAVMELLRGIRSQLTELISGLNDSDLAAMSLGLAHSLARYKLKFSPDKVDTMI 160 (498)
T ss_pred cCCeeeeccHHHhHHHHHhhcceeecchhHHHHHHHHHHHHHHHhccCChhhhhHHHHHHHHHHHhhhcccCcchhhHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhccCccchhhccCcHHHHHHHHHhcCCCCCCcccccccCcHHHHHHHHHHHhhcc
Q 008852 161 IQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISM 240 (551)
Q Consensus 161 Vqai~llddLDkeIn~~~~rvREwY~~hFPEL~~Iv~d~~~YakvV~~ig~r~n~~~~dL~~iL~~e~~~~v~~aA~~Sm 240 (551)
||||+||||||+|||+|+||||||||||||||.+||.||+.|+++|+.||+|.|+...||++|||++++..+..||.+||
T Consensus 161 iQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~Yak~vk~mG~r~~~a~~d~sEil~eeiE~~~k~aAeiSM 240 (498)
T KOG2572|consen 161 IQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYAYAKLVKAMGVRCNAASLDFSEILPEEIEAELKEAAEISM 240 (498)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHhHhhhhhcccHHhhchHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHhhCCcchhccCCchhhhhhchh
Q 008852 241 GTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAE 320 (551)
Q Consensus 241 G~~lse~Dl~~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAE 320 (551)
|++|++.|+.+|..+|+||+++.+||.||.+||++||+.||||||+|||++||||||+|||||.||||+|+|||||||||
T Consensus 241 gteis~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLaK~p~StIQilGAE 320 (498)
T KOG2572|consen 241 GTEISDSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLAKAPASTIQILGAE 320 (498)
T ss_pred cccccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHhhCChhHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCceEEEeeccccccCCcccccchhHhhhhhhHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCC
Q 008852 321 KALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKE 400 (551)
Q Consensus 321 KALFraLkt~~~tPKyGlIy~s~lV~~ap~k~kgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~re~Ie~rl~~l~~~~ 400 (551)
|||||||+|+++|||||+|||++||+|+||+++|||+|.||||++||+|+|+|+++.+|.+|.+.|.+||+||+.|+++.
T Consensus 321 KALFrALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~klE~rlr~lE~r~ 400 (498)
T KOG2572|consen 321 KALFRALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLEGRD 400 (498)
T ss_pred HHHHHHHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccccccCCCCcccccccccCCCcc
Q 008852 401 LGRAAGSAKGKPKIEVYDKDRKKGPGAMITAAKTYNPAAD 440 (551)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~y~~~~d 440 (551)
+.+.++.+++.++...|..... ...+.+|++.+|
T Consensus 401 l~~~s~~~k~~~K~~~ye~~~~------~~~adt~~~~~~ 434 (498)
T KOG2572|consen 401 LQESSILKKPLAKKEKYEGRSE------TTSADTYNTIRD 434 (498)
T ss_pred cccccccccchhHHHHhccccc------cCcccccccccc
Confidence 9999888877777777764221 244455555555
No 2
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-130 Score=1009.92 Aligned_cols=402 Identities=48% Similarity=0.766 Sum_probs=388.3
Q ss_pred CEEeeeccceeeEEEecCcCcc-cchhhHHHHhcCHHHhhccEEeeeeecCCCHHHHHHHHHHhhhcCCCHHHHHHHHhc
Q 008852 1 MLVLFETPAGFALFKVLDEGKL-SKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTH 79 (551)
Q Consensus 1 m~vLfEt~~GyaLFkv~~~~~~-~~~~~~~~~~~~~~~~~~~vkL~~f~~F~~~~~Al~~~~~i~eg~~~~~L~~fL~~~ 79 (551)
+|||||+|+||+||.+...+.| ...+++..+..++.+|+++|.|.+|.||+++.+||+++++|+||.++++|++||+.|
T Consensus 3 ~~ll~E~a~GY~lf~~~~~dei~~~~~~v~~s~~D~~kf~~vv~l~sf~pFk~a~~ALen~n~iSeG~~~edLr~fLe~n 82 (498)
T KOG2573|consen 3 EYLLFESATGYGLFKVKEQDEIGLHLKEVRSSVDDLSKFTQVVQLASFAPFKGAADALENANAISEGVVHEDLRSFLELN 82 (498)
T ss_pred ceEEEeccCceeEEEEechhHhhhhhHHHHHHHHhHHHHHhHhhhhccCCcccHHHHHHhccccccccccHHHHHHHHhh
Confidence 5899999999999999987777 578899999999999999999999999999999999999999999999999999999
Q ss_pred CC-----CCeEEEeccchhHHHHhhhC-CccccchHHHHHHHHHHHhHHHHhcCCCCCChhhhhhhhhhhhhhhhhcccc
Q 008852 80 CD-----GETLAVADSKLGNAIKDKLK-IECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSA 153 (551)
Q Consensus 80 ~~-----~~~L~V~D~kL~~~I~~~l~-i~~~~~~~v~el~RgIR~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~ 153 (551)
++ +.+|+|+|++||..|++.++ |+|.+++.++|+|||+|.||++|+.||++.|+..|+|||+|+|||.||+|++
T Consensus 83 lpK~kkkk~sLgi~d~kLg~~i~E~~~~i~c~~~~~~~ellRGvR~hf~kl~K~L~~~d~~kaqLGLghsYSRaKVkfnV 162 (498)
T KOG2573|consen 83 LPKVKKKKVSLGIGDSKLGISIKEAFPKIPCQSNEVVQELLRGVRKHFDKLMKGLDPGDLEKAQLGLGHSYSRAKVKFNV 162 (498)
T ss_pred ChhhhcCceeeccCcchhhhHHHhhccCcccccchhHHHHHHHHHHHHHHHHccCCCccHHHHHhcccchhhhhheeecc
Confidence 84 47899999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCccchhhccCcHHHHHHHHHhcCCCCCCccc---ccccC--cHHH
Q 008852 154 DKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLD---FSEIL--PEEV 228 (551)
Q Consensus 154 ~k~D~~IVqai~llddLDkeIn~~~~rvREwY~~hFPEL~~Iv~d~~~YakvV~~ig~r~n~~~~d---L~~iL--~~e~ 228 (551)
+++|+||||+|.|||+||++||+|+||||||||||||||.+||+||..|+++|+.|+++..++... +-+.| ..+.
T Consensus 163 ~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFPEL~kiv~DNy~ya~~~~~i~dk~~l~ed~~~~~~e~l~~d~~k 242 (498)
T KOG2573|consen 163 NRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFPELVKIVPDNYKYAKVVKFIVDKEKLNEDGLHELLEDLGVDSEK 242 (498)
T ss_pred cccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccHHHHHhccchHHHHHHHHHHhchhhccccchhHHHHHhcCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888765 33334 3678
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHhhCCcchhcc
Q 008852 229 EAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAK 308 (551)
Q Consensus 229 ~~~v~~aA~~SmG~~lse~Dl~~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK 308 (551)
++.|++|+.+|||++||+.||.||..|+++|.+|.+||.+|++||.++|+.|||||++|+|+.||||||+|||||+||||
T Consensus 243 a~~Iiea~k~SMG~diS~~Dl~Ni~~fa~rV~~l~eyRk~L~~YL~~KMs~vAPnLa~LIGe~vgARLIShAGsLtNLaK 322 (498)
T KOG2573|consen 243 AQEIIEAAKNSMGQDISPADLENIRKFAERVSDLAEYRKQLSDYLKDKMSSVAPNLAALIGEVVGARLISHAGSLTNLAK 322 (498)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhchhhhhhhhhhccCCCCceEEEeeccccccCCcccccchhHhhhhhhHHHHhhhccCCCCCChhhHHHHHH
Q 008852 309 QPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAK 388 (551)
Q Consensus 309 ~PAStIQiLGAEKALFraLkt~~~tPKyGlIy~s~lV~~ap~k~kgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~re~ 388 (551)
+||||||||||||||||+|||+++||||||||||+||++|..+++|+|+|+||+||+||+|||||++.|++.||..+|++
T Consensus 323 ~PASTvQIlGAEKALFRALKtrgnTPKYGLIyhSsfigrA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe~Lr~q 402 (498)
T KOG2573|consen 323 YPASTVQILGAEKALFRALKTRGNTPKYGLIYHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGEKLREQ 402 (498)
T ss_pred CcchHHHHhhhHHHHHHHHHhcCCCCCceeEeecchhhhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC
Q 008852 389 LEARLRNLEGKELG 402 (551)
Q Consensus 389 Ie~rl~~l~~~~~~ 402 (551)
||+||++++.|..+
T Consensus 403 VEeRL~fy~tg~~p 416 (498)
T KOG2573|consen 403 VEERLEFYETGEAP 416 (498)
T ss_pred HHHHHHhhhcCCcc
Confidence 99999999998643
No 3
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=3e-100 Score=806.95 Aligned_cols=369 Identities=34% Similarity=0.512 Sum_probs=346.8
Q ss_pred CEEeeeccceeeEEEecCcCcccchhhHHHHhcCHHHhhccEEeeeeecCCCHHHHHHHHHHhhhcCCCHHHHHHHHhcC
Q 008852 1 MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHC 80 (551)
Q Consensus 1 m~vLfEt~~GyaLFkv~~~~~~~~~~~~~~~~~~~~~~~~~vkL~~f~~F~~~~~Al~~~~~i~eg~~~~~L~~fL~~~~ 80 (551)
|+.|+|||.||.+|.-.. ++.+ .-.-|.+..+||+++++|++|++++.|++||+.+.
T Consensus 1 ~~~~~~~~~g~~~~~~~~--~~~~---------------------~~~~~~~~~~a~~~~~~~~~g~~~~~l~~~l~~~~ 57 (414)
T PRK14552 1 KIYIAEHVIGAFAFDENG--KLID---------------------KIFNPEDIPKIVEELLNNEKGEPTNALFELLEELK 57 (414)
T ss_pred CeeeeeccceeeEEccCc--chhh---------------------hhcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHhch
Confidence 789999999999997533 2210 22345679999999999999999999999999843
Q ss_pred --CCCeEEEeccchhHHHHhhhCCccccchHHHHHHHHHHHhHHHHhcC--C--CCCChhhhhhhhhhhhhhhhhccccc
Q 008852 81 --DGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISG--L--AGQDLQPMSLGLSHSLSRYKLKFSAD 154 (551)
Q Consensus 81 --~~~~L~V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR~~~~~ll~~--l--~~~d~~~~~lgLshslsr~Klk~s~~ 154 (551)
.+.+|+|+|++|+..|++ +||+|+.+ .+.+++|+||.|+++++.+ + ++.|+..+.+|++|+++|++|+|+++
T Consensus 58 ~~~~~~l~v~d~~l~~~l~~-~~~~~~~~-~~~~~~r~iR~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~sr~klk~~~~ 135 (414)
T PRK14552 58 ELGPDEVVVENEEESRKLQE-LGYRVTVE-PPNKIGEFLRENLPELGVEYGFFEDEEEFYEKLHEWSVELTRRKLRSAAQ 135 (414)
T ss_pred hcCCceEEEecHHHHHHHHH-cCCeeEec-cHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHhHHHHHHHHHhccC
Confidence 247899999999999997 89999854 6699999999999999974 4 47899999999999999999999999
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCccchhhccCcHHHHHHHHHhcCCCCCCccccccc-CcHHHHHHHH
Q 008852 155 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLK 233 (551)
Q Consensus 155 k~D~~IVqai~llddLDkeIn~~~~rvREwY~~hFPEL~~Iv~d~~~YakvV~~ig~r~n~~~~dL~~i-L~~e~~~~v~ 233 (551)
+.|+||||||+++|+||++||.|||||||||+||||||++||+|+.+|+++|+.+|++.++...+|.++ +++++++.|.
T Consensus 136 ~~D~~iiqai~~ld~ldk~in~~~~RLrewY~~~FPEL~~iv~d~~~Y~~iV~~i~~~~~i~~~~l~~i~l~~eka~~I~ 215 (414)
T PRK14552 136 KRDKLAIQAIRAIDDIDKTINLFSERLREWYSLHFPELDELVKKHEEYVKLVSELGDRENYTREKLKKLGLPENKARKIA 215 (414)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHhhcCChHHHHHHHHHcCChhhhhhhHHHhccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988889888 9999999999
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHhhCCcchhccCCchh
Q 008852 234 EAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGST 313 (551)
Q Consensus 234 ~aA~~SmG~~lse~Dl~~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PASt 313 (551)
+||.+|||+++++.|+.+|..+|++|++|+++|++|.+||+++|..||||||+|||+.+|||||+|||||.+||+|||||
T Consensus 216 ~aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~iAPNLtaLVG~~lAArLIa~AGsL~~Lak~Past 295 (414)
T PRK14552 216 EAAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLETVMKEVAPNLTALVGPSLGARLISLAGGLEELAKMPAST 295 (414)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhhHHHHHHHHHhCCHHHHhhCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhhhhhhccCCCCceEEEeeccccccCCcccccchhHhhhhhhHHHHhhhccCCCCCChhhHHHHHHHHHHH
Q 008852 314 VQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARL 393 (551)
Q Consensus 314 IQiLGAEKALFraLkt~~~tPKyGlIy~s~lV~~ap~k~kgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~re~Ie~rl 393 (551)
|||||||||||+||+|+++||||||||||++|+++|+++||||+|+||||||||||||+|++ +.+|..+|++|++||
T Consensus 296 IqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgkiaR~lA~K~alAARiD~~~~---~~~G~~l~~~l~~ri 372 (414)
T PRK14552 296 IQVLGAEKALFRHLRTGAKPPKHGVIFQYPAIHGSPWWQRGKIARALAAKLAIAARVDYFSG---RYIGDELKEELNKRI 372 (414)
T ss_pred HHHhchhhHHHHHhccCCCCCCceEEEcCHHHhhCCHHHHHHHHHHHHHHHHHHHHhhhcCC---ccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 479999999999999
Q ss_pred HHhh
Q 008852 394 RNLE 397 (551)
Q Consensus 394 ~~l~ 397 (551)
+++.
T Consensus 373 ~~i~ 376 (414)
T PRK14552 373 EEIK 376 (414)
T ss_pred HHHH
Confidence 9874
No 4
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-97 Score=769.25 Aligned_cols=350 Identities=45% Similarity=0.678 Sum_probs=332.8
Q ss_pred EeeeeecCCCHHHHHHHHHHhhhcCCCHHHHHHHHhcCC----CCeEEEeccchhHHHHhhhCCccccchHHHHHHHHHH
Q 008852 43 KLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHCD----GETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVR 118 (551)
Q Consensus 43 kL~~f~~F~~~~~Al~~~~~i~eg~~~~~L~~fL~~~~~----~~~L~V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR 118 (551)
+|.+|.+|++..+++++-..+.||.++..|..||..++. ..++.++|++|+. .....|+.++....+.++++
T Consensus 2 ~l~~~~~f~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~l~~----~~~~~~~~~~~~~~~r~~~~ 77 (395)
T COG1498 2 SLVDFEPFPSDADALEEELLISEGGVSSALEVNLELELIEGEKKLELVVCDTKLGN----ADSAFEIPSEVGEDLRENAE 77 (395)
T ss_pred CccccccCCccHHHHhhhhhhhhcccchHHHHHHHhhcccchheeeccchhhhhhc----ccccccCCcHHHHHHHHHHH
Confidence 578999999999999999999999999999999998762 3578899999987 33467778888899999999
Q ss_pred HhHHHHhcCCCCCChhhhhhhhhhhhhhhhhccccchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCccchhhccC
Q 008852 119 SQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQD 198 (551)
Q Consensus 119 ~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~~IVqai~llddLDkeIn~~~~rvREwY~~hFPEL~~Iv~d 198 (551)
.++.++..+. ++|+..+.++++|+++|.++++++++.|+||||||++|||||++||.||||||||||||||||++||+|
T Consensus 78 ~~~~~l~~~~-~~d~~~~~~~~~~~~sr~kv~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY~~hFPEL~~lv~~ 156 (395)
T COG1498 78 EALGELSSSD-EDDYYRMLLGLGHELSRIKVREEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPD 156 (395)
T ss_pred HHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhccc
Confidence 9999998776 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCcc---cccccCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008852 199 NILYAKAVKLMGDRSNAAKL---DFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKS 275 (551)
Q Consensus 199 ~~~YakvV~~ig~r~n~~~~---dL~~iL~~e~~~~v~~aA~~SmG~~lse~Dl~~I~~~~~~vi~L~e~R~~L~~YL~s 275 (551)
|.+||++|..+|+|.+++.. +|..++|. .++.|..+|..|||+++++.|+.+|..||+.|.+|.++|.+|.+||++
T Consensus 157 ~~~Y~~~V~~~g~~~~~~~~~~~~l~~~~~~-~~~~i~~aA~~SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~l~~Yi~~ 235 (395)
T COG1498 157 NEQYAKLVSALGNRENINKESLKDLGFALPD-IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLEEYIES 235 (395)
T ss_pred HHHHHHHHHHHcchhccchhhHHHHhhhcch-HHHHHHHHhhcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888 45666676 889999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhhhhchHHHHHHHHhhCCcchhccCCchhhhhhchhhhhhhhhhccCCCCceEEEeeccccccCCcccccc
Q 008852 276 RMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGK 355 (551)
Q Consensus 276 rM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKALFraLkt~~~tPKyGlIy~s~lV~~ap~k~kgK 355 (551)
+|+.||||||+|||++||||||+|||||.+||+|||||||+|||||||||||+++++|||||+||||++|+++|+|+|||
T Consensus 236 ~M~~vAPNlt~LVG~~lgARLIs~AGgL~~LAk~PASTIQvLGAEKALFraL~~~~~~PK~GvIy~~p~I~~sp~~~rGk 315 (395)
T COG1498 236 KMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKSPPWQRGK 315 (395)
T ss_pred HHHHhCccHHHHHhHHHHHHHHHHhcCHHHHHhCccchhhhhhhhHHHHHHHhCCCCCCCceeEeeChhhccCCHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhhhHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCCC
Q 008852 356 ISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKEL 401 (551)
Q Consensus 356 iaR~LAaK~aLAARvDa~~~~~d~~~G~~~re~Ie~rl~~l~~~~~ 401 (551)
|||+||||||||||||+|++.+++ ..||++|++||++|.++..
T Consensus 316 iAR~LAaK~AIAARiD~~s~~~~~---~~lr~ele~Ri~~i~~~~~ 358 (395)
T COG1498 316 IARALAAKLAIAARIDAFSGEPDG---ISLREELEKRIEKLKEKPP 358 (395)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHhccCC
Confidence 999999999999999999998876 8999999999999998763
No 5
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=100.00 E-value=1.3e-67 Score=547.22 Aligned_cols=274 Identities=28% Similarity=0.477 Sum_probs=260.9
Q ss_pred hhhhhhhhccccchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCccchhhccCcHHHHHHHHHhcCCCCCCccccc
Q 008852 142 HSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFS 221 (551)
Q Consensus 142 hslsr~Klk~s~~k~D~~IVqai~llddLDkeIn~~~~rvREwY~~hFPEL~~Iv~d~~~YakvV~~ig~r~n~~~~dL~ 221 (551)
.....|+| ||.++.+..+||+||+.+|.|||+||+.+||||+++|++|++|+++|+.|||..|....++.
T Consensus 89 E~dpeykL----------IVd~n~iavdI~nEI~ivH~FikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~ 158 (492)
T KOG2574|consen 89 EADPEYKL----------IVDCNQIAVDIENEIVIVHNFIKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLE 158 (492)
T ss_pred ccCcceee----------eechhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 44567885 99999999999999999999999999999999999999999999999999999888777655
Q ss_pred --ccCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHh
Q 008852 222 --EILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAH 299 (551)
Q Consensus 222 --~iL~~e~~~~v~~aA~~SmG~~lse~Dl~~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~ 299 (551)
.|||.+++|+|.++|.+|.|..++++.+.+|.++|+.+++|...|..|.+||++||+.||||||+|||+.++|+||++
T Consensus 159 ~~~~L~~atIMVvsvTasTT~G~~Lp~d~~~~v~eAc~~a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~ 238 (492)
T KOG2574|consen 159 LQAILPSATIMVVSVTASTTQGNKLPEDELEQVLEACEMAEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGI 238 (492)
T ss_pred hhccCccceEEEEEEEeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHh
Confidence 499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcchhccCCchhhhhhchhhhhhhhhhccCCCCceEEEeeccccccCCcccccchhHhhhhhhHHHHhhhccCCCCCC
Q 008852 300 GGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDN 379 (551)
Q Consensus 300 AGsL~~LAK~PAStIQiLGAEKALFraLkt~~~tPKyGlIy~s~lV~~ap~k~kgKiaR~LAaK~aLAARvDa~~~~~d~ 379 (551)
||||.+|++|||||||+||+.|.+..+|+|-...|+|||||+|++||..||.+|.|++|||||||+||||||+++++++|
T Consensus 239 AGGls~Lsk~PaCNv~vlGk~kk~l~gfst~~~~~~~Gyly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g 318 (492)
T KOG2574|consen 239 AGGLSELSKMPACNVQVLGKQKKTLIGFSTTSSLPHTGYLYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNG 318 (492)
T ss_pred hcCchhhccCCcchhhhhhccchhccccccccccCccceeeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccccCCCCcccc
Q 008852 380 SMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMIT 430 (551)
Q Consensus 380 ~~G~~~re~Ie~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~ 430 (551)
.+|..||++|+.++++|.++|.. ...++.|.|.+.+||+|.||...
T Consensus 319 ~~g~~~k~evekK~eKl~EpPpv-----k~~KaLP~P~d~pkKkRgGRR~R 364 (492)
T KOG2574|consen 319 ELGHEFKAEVEKKIEKLQEPPPV-----KQTKALPIPLDGPKKKRGGRRFR 364 (492)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCC-----CcCCCCCCCCccchhhccchHHH
Confidence 99999999999999999997632 45678899999999999988753
No 6
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=7.4e-55 Score=406.23 Aligned_cols=149 Identities=55% Similarity=0.869 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHhhCCcchhccCCchhhhhhchhhhhhhhhhcc
Q 008852 251 NIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTK 330 (551)
Q Consensus 251 ~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKALFraLkt~ 330 (551)
||.++|+++++|+++|+.|.+||++||..||||||+|||+.||||||+|||||.+||+|||||||+|||||++|++|+++
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~vaA~Li~~aGgL~~Lak~Pasniq~lGaeK~~~~~l~~~ 80 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSSVAARLISHAGGLENLAKMPASNIQVLGAEKALFRGLKTK 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS-HHHHTTSTCHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcHHHHHHHHHcccHHHHHhCCHhhHHHHHhHHHHhHHhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeeccccccCCcccccchhHhhhhhhHHHHhhhccCCCCCCh-hhHHHHHHHHHHHHHhhcC
Q 008852 331 HATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNS-MGLENRAKLEARLRNLEGK 399 (551)
Q Consensus 331 ~~tPKyGlIy~s~lV~~ap~k~kgKiaR~LAaK~aLAARvDa~~~~~d~~-~G~~~re~Ie~rl~~l~~~ 399 (551)
++||||||||||++|+++||++||||+|+||+||+||||||+|++.++++ ||..||++|++||++|++.
T Consensus 81 ~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~re~i~~ki~k~~e~ 150 (150)
T PF01798_consen 81 AKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLREEIEKKIEKLQEK 150 (150)
T ss_dssp -SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999995 9999999999999999873
No 7
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.87 E-value=1.1e-22 Score=159.58 Aligned_cols=53 Identities=58% Similarity=1.091 Sum_probs=51.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhccCccchhhccCcHHHHHHHHHhcC
Q 008852 159 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGD 211 (551)
Q Consensus 159 ~IVqai~llddLDkeIn~~~~rvREwY~~hFPEL~~Iv~d~~~YakvV~~ig~ 211 (551)
||||||+++++||+|||.+|||+|||||||||||++||+||.+|+++|+.|||
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999996
No 8
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=99.80 E-value=4.1e-20 Score=151.72 Aligned_cols=66 Identities=50% Similarity=0.681 Sum_probs=61.6
Q ss_pred CEEeeeccceeeEEEecCcCcccch-hhHHHHhcCHHHhhccEEeeeeecCCCHHHHHHHHHHhhhc
Q 008852 1 MLVLFETPAGFALFKVLDEGKLSKV-EGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLES 66 (551)
Q Consensus 1 m~vLfEt~~GyaLFkv~~~~~~~~~-~~~~~~~~~~~~~~~~vkL~~f~~F~~~~~Al~~~~~i~eg 66 (551)
||||||||+|||||+|+++..+... +++|+.|.++++|+++|+|++|.||+|+.+||+++++|+||
T Consensus 1 m~vLfEtaaGyaLF~v~~~~~~~~~~~~v~~~~~~~~~f~k~vkL~aF~pF~s~~~ALe~~~aiseG 67 (67)
T PF08156_consen 1 MLVLFETAAGYALFKVKDEKDEIGSDEEVQKSFSDPEKFSKIVKLKAFSPFKSAEEALENANAISEG 67 (67)
T ss_pred CEEEEcCCCeeeeeEEechhhhhccHHHHHHHHcCHHHHhhhhhhhhccCCCCHHHHHHHHHHhhcC
Confidence 9999999999999999976666433 79999999999999999999999999999999999999998
No 9
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=63.25 E-value=78 Score=32.71 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHH
Q 008852 257 DQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARL 296 (551)
Q Consensus 257 ~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArL 296 (551)
+.+..-.+.+..+..||......+..+....||..|--+|
T Consensus 283 ~~l~~~~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l 322 (367)
T PF04286_consen 283 DKLKEDPELREKINRFIENLLERIVESNHIDIGEIVEEKL 322 (367)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443336777788888887777777776666766665443
No 10
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=59.09 E-value=18 Score=38.59 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=54.7
Q ss_pred HHHHHHHHhhccCC---CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHhhC
Q 008852 229 EAQLKEAAMISMGT---EVSDLDLLNIKELCDQVLS-LAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGG 301 (551)
Q Consensus 229 ~~~v~~aA~~SmG~---~lse~Dl~~I~~~~~~vi~-L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~AG 301 (551)
.+.+...-.+|-|. +.+++|+..+..+-..++. .+-.-.++.+|+..--..+|| .||+||..||.-.|..-+
T Consensus 229 ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~P-v~AvVGGivaQevIk~is 304 (331)
T KOG2014|consen 229 LLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAP-VCAVVGGILAQEVIKAIS 304 (331)
T ss_pred hHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCc-hhhhhhhHhHHHHHHHhh
Confidence 44555555666665 4569999998888777776 555666777889888889999 999999999988876443
No 11
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=50.72 E-value=47 Score=33.82 Aligned_cols=102 Identities=21% Similarity=0.146 Sum_probs=73.7
Q ss_pred EEEeccchhHHHHhhhCCccccchHHHHHHHHHHHhHHHHhcCCCCCChhhhhhhhhhhhhhhhhccccchhhHHHHHHH
Q 008852 85 LAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAI 164 (551)
Q Consensus 85 L~V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~~IVqai 164 (551)
..|+|.|-.-.=.=..-|+-+|...|.||| +-.|+-+.=..+.-+.+ ++|||-..+-++-=-+.|+..=.-|.+|+
T Consensus 5 ~TVSDtKr~F~~~~p~pI~siYrrvv~ELL--VElHLl~~n~~F~yDpl--fAlGlvt~fd~fm~GY~Pee~~~~IF~Al 80 (214)
T TIGR03060 5 RTVSDSKRAFHAAFPRVIPPLYRRVVDELL--VELHLLSHQSDFKYDPL--FALGLVTVFDRFMEGYRPEEHLDALFDAL 80 (214)
T ss_pred CcHHHHHHHHHHhCCCCCchHHHHHHHHHH--HHHHHHHhccCceeCch--HHhhHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457777654332223357888999999998 67777666555555444 58899999998877787887777888887
Q ss_pred HhHHHHH-HHHHHHHHHHHHHHhccCc
Q 008852 165 GLLDDLD-KELNTYAMRVREWYGWHFP 190 (551)
Q Consensus 165 ~llddLD-keIn~~~~rvREwY~~hFP 190 (551)
.--...| ..+..-+..+.+|.+-+=+
T Consensus 81 c~a~~~dp~~~r~dA~~l~~~a~~~s~ 107 (214)
T TIGR03060 81 CNSNGFDPEQLREDAKQLLEQAKGKGL 107 (214)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCH
Confidence 7765555 6688888999999987644
No 12
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=45.10 E-value=68 Score=32.47 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=73.0
Q ss_pred EEeccchhHHHHhhhCCccccchHHHHHHHHHHHhHHHHhcCCCCCChhhhhhhhhhhhhhhhhccccchhhHHHHHHHH
Q 008852 86 AVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIG 165 (551)
Q Consensus 86 ~V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~~IVqai~ 165 (551)
.|+|.|-.-.=.=..-|+-+|...|.||| +-.|+-+.=..+.-+.+ ++|||-..+-++-=-+.|+..=.-|.+|+.
T Consensus 4 TVsDtKr~F~~~~p~pI~siYrrvv~ELL--VE~HLl~~n~~f~yD~l--fAlGlvt~fd~fm~GY~Pee~~~~IF~Alc 79 (206)
T PLN03060 4 TVADTKASFLKAYRKPIPSIYSNVIQELL--VQQHLMRYNATYKYDPI--FALGFVTVYDQLMDGYPNATDRDAIFKAYI 79 (206)
T ss_pred cHHHHHHHHHHhCCCCCchHHHHHHHHHH--HHHHHHHhccCceeCch--HHhhHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46666543322222357788999999998 67777766555554444 588999999988777778777777888877
Q ss_pred hHHHHH-HHHHHHHHHHHHHHhccCcc
Q 008852 166 LLDDLD-KELNTYAMRVREWYGWHFPE 191 (551)
Q Consensus 166 llddLD-keIn~~~~rvREwY~~hFPE 191 (551)
--...| ..+..-+..+.+|.+-+=++
T Consensus 80 ~a~~~dp~~~r~dA~~l~~~a~~~s~~ 106 (206)
T PLN03060 80 EALGEDPDQYRKDAKKLEEWASSQSAS 106 (206)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhcCCHH
Confidence 655555 66888899999999877665
No 13
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.63 E-value=27 Score=33.91 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=29.3
Q ss_pred ecCCCHHHHHHHHHHhhh--cCCCHHHHHHHHhcCC
Q 008852 48 SKFENTSEALKAATCLLE--SKPSKDLRKFLRTHCD 81 (551)
Q Consensus 48 ~~F~~~~~Al~~~~~i~e--g~~~~~L~~fL~~~~~ 81 (551)
.||+++..||+++..|.+ -.++++.++-|...++
T Consensus 76 kpyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~ 111 (158)
T PF10083_consen 76 KPYPWTENALEAANELIEEDEELSPDEKEQFKESLP 111 (158)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhH
Confidence 589999999999999988 6788888888887763
No 14
>PRK13266 Thf1-like protein; Reviewed
Probab=40.43 E-value=62 Score=33.15 Aligned_cols=103 Identities=22% Similarity=0.209 Sum_probs=75.3
Q ss_pred EEEeccchhHHHHhhhCCccccchHHHHHHHHHHHhHHHHhcCCCCCChhhhhhhhhhhhhhhhhccccchhhHHHHHHH
Q 008852 85 LAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAI 164 (551)
Q Consensus 85 L~V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~~IVqai 164 (551)
..|+|.|-.-.=.=..-|+-+|...|.||| +-.|+-..=..+.-+.+ +.|||-..+-++-=-+.|+..=.-|.+|+
T Consensus 5 ~TVSDtKr~F~~~~p~pI~siYrrvv~ELL--VElHLl~~n~~F~yDpl--fAlGlvt~fd~fm~GY~Pee~~~~IF~Al 80 (225)
T PRK13266 5 RTVSDSKRAFYAAFPRPINSIYRRVVDELL--VELHLLSVNSDFKYDPL--FALGLVTVFDRFMQGYRPEEHKDSIFNAL 80 (225)
T ss_pred CcHHHHHHHHHHhCCCCCchHHHHHHHHHH--HHHHHHHhccCceeCch--HHhhHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457777654332223357888999999998 77777766555555444 58899999999887787888777888888
Q ss_pred HhHHHHH-HHHHHHHHHHHHHHhccCcc
Q 008852 165 GLLDDLD-KELNTYAMRVREWYGWHFPE 191 (551)
Q Consensus 165 ~llddLD-keIn~~~~rvREwY~~hFPE 191 (551)
.--...| ..+..-+..+.+|.+-+=++
T Consensus 81 c~a~~~dp~~~r~dA~~l~~~a~~~s~~ 108 (225)
T PRK13266 81 CQAVGFDPEQLRQDAERLLELAKGKSLK 108 (225)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCCHH
Confidence 7766665 66888899999999877543
No 15
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=37.98 E-value=16 Score=40.30 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcccccCCchhhhhchHHHHHHH
Q 008852 265 YRAQLYDYLKSRMNTVAPNLTALVGELVGARLI 297 (551)
Q Consensus 265 ~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLI 297 (551)
.-..+..++-.|.+...-+++.++++.+-|.|=
T Consensus 201 ~Yak~vk~mG~r~~~a~~d~sEil~eeiE~~~k 233 (498)
T KOG2572|consen 201 AYAKLVKAMGVRCNAASLDFSEILPEEIEAELK 233 (498)
T ss_pred HHHHHHHHHhHhhhhhcccHHhhchHHHHHHHH
Confidence 334566677777788888888888888877765
No 16
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=35.48 E-value=98 Score=31.56 Aligned_cols=101 Identities=21% Similarity=0.241 Sum_probs=70.9
Q ss_pred EeccchhHHHHhhhCCccccchHHHHHHHHHHHhHHHHhcCCCCCChhhhhhhhhhhhhhhhhccccchhhHHHHHHHHh
Q 008852 87 VADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGL 166 (551)
Q Consensus 87 V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~~IVqai~l 166 (551)
|+|.|-.-.-.=..-|+-+|...|.||| +-.|+-..=..+.-+.+ +.||+-..+-|+-=-+.|+.-=..|.+|+.-
T Consensus 2 VsDtKr~F~~~~~~pI~siYrrvv~ELL--Ve~HLl~~n~~F~yD~l--falG~vt~fd~fm~GY~p~~~~~~If~Alc~ 77 (216)
T PF11264_consen 2 VSDTKRAFYKAFPRPIPSIYRRVVDELL--VELHLLSVNKDFQYDPL--FALGLVTVFDRFMQGYPPEEDKDSIFNALCQ 77 (216)
T ss_pred hhHHHHHHHHhCCCCCcHHHHHHHHHHH--HHHHHHHhccCceeCch--HHhhHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5666654444334467888999999998 66677666555554444 4788888888887777777766677777766
Q ss_pred HHHHH-HHHHHHHHHHHHHHhccCcc
Q 008852 167 LDDLD-KELNTYAMRVREWYGWHFPE 191 (551)
Q Consensus 167 lddLD-keIn~~~~rvREwY~~hFPE 191 (551)
-...| ..+..-+..+.+|..-+=++
T Consensus 78 a~~~dp~~~r~dA~~l~~~a~~~s~~ 103 (216)
T PF11264_consen 78 ALGFDPEQYRQDAEKLEEWAKGKSIE 103 (216)
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 55555 56788888999997766544
No 17
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=33.87 E-value=28 Score=38.62 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=11.4
Q ss_pred CCccccchHHHHHHH
Q 008852 101 KIECVHNNAVMELMR 115 (551)
Q Consensus 101 ~i~~~~~~~v~el~R 115 (551)
+++|++...+++-+|
T Consensus 62 n~n~iSeG~~~edLr 76 (498)
T KOG2573|consen 62 NANAISEGVVHEDLR 76 (498)
T ss_pred hccccccccccHHHH
Confidence 688888877777764
No 18
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=33.44 E-value=74 Score=30.59 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhccCccchhh-----ccCcHHHHHHHHHhcCCC
Q 008852 175 NTYAMRVREWYGWHFPELAKI-----IQDNILYAKAVKLMGDRS 213 (551)
Q Consensus 175 n~~~~rvREwY~~hFPEL~~I-----v~d~~~YakvV~~ig~r~ 213 (551)
|-....|++||-+-|-+|-+. ..++..|+.++..|-+|.
T Consensus 52 ~p~i~~V~~~Y~~sF~~L~~~~~~~~~~~~~~F~~~l~~i~~~H 95 (164)
T PF10436_consen 52 NPSIQQVYEWYLQSFEELRSFPPPKTLEDNEKFTELLERILDRH 95 (164)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSTTTSCCHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455678999999999988875 225778888888876654
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=32.00 E-value=55 Score=33.82 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=37.2
Q ss_pred cceeeEEEecCcCcccchhhHHHHhcCHHHhhccEEe----------eeeecCCCHHHHHHHHHHhh
Q 008852 8 PAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKL----------KAFSKFENTSEALKAATCLL 64 (551)
Q Consensus 8 ~~GyaLFkv~~~~~~~~~~~~~~~~~~~~~~~~~vkL----------~~f~~F~~~~~Al~~~~~i~ 64 (551)
..||.||-- +-.--.+.++|++.|..+..+..+--+ .+|..|.+.++|..++.++.
T Consensus 267 ~~~~~lfV~-NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln 332 (352)
T TIGR01661 267 GAGYCIFVY-NLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN 332 (352)
T ss_pred CCCcEEEEe-CCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC
Confidence 457788843 211113667899999876666553222 37999999999988777663
No 20
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=30.64 E-value=1.1e+02 Score=32.55 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=74.2
Q ss_pred CeEEEeccchhHHHHhhhCCccccchHHHHHHHHHHHhHHHHhcCCCCCChhhhhhhhhhhhhhhhhccccchhhHHHHH
Q 008852 83 ETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQ 162 (551)
Q Consensus 83 ~~L~V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~~IVq 162 (551)
....|+|.|-.-.=.=..-|+-+|...+.||| +..|+-..=..+.-+.+ +.|||-..|-++-=-+.|+..=.-|.+
T Consensus 54 ~~~TVSDTKr~F~~~yp~pIpsiYrrvvdELL--VElHLLs~n~~F~yDpl--FALGlVtvfd~fm~GY~Pee~~~~IF~ 129 (283)
T PLN00047 54 VPPTVAETKAKFLKSYKRPIPSIYSTVLQELL--VQQHLMRYKKTYRYDPV--FALGFVTVYDQLMEGYPSDEDRDAIFK 129 (283)
T ss_pred CCCcHHHHHHHHHHhCCCCCcHHHHHHHHHHH--HHHHHHHhccCceeCch--hhhhhHHHHHHHHccCCChHHHHHHHH
Confidence 34567787754332223357888999999998 77787777665555554 488999989888777777776667777
Q ss_pred HHHhHHHHH-HHHHHHHHHHHHHHhccCc
Q 008852 163 AIGLLDDLD-KELNTYAMRVREWYGWHFP 190 (551)
Q Consensus 163 ai~llddLD-keIn~~~~rvREwY~~hFP 190 (551)
|+.--...| +.++.-+..+.+|..-+=+
T Consensus 130 Alc~a~g~Dp~qyr~dA~~l~~~A~~~s~ 158 (283)
T PLN00047 130 AYIKALGEDPEQYRKDAAKLEEWARSQTG 158 (283)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCCH
Confidence 776654454 6688888999999886554
No 21
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=26.86 E-value=1.5e+02 Score=37.51 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhch-------------HHHHHHHHhhCCcchhccC
Q 008852 251 NIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGE-------------LVGARLIAHGGSLLNLAKQ 309 (551)
Q Consensus 251 ~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~-------------~vaArLIs~AGsL~~LAK~ 309 (551)
.+..+| +-+.+...+.-|..-+.+.|..+||||+.+... -||.+||..||.=..-+.+
T Consensus 1105 Mv~~La-~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~vd~~~~eN~~va~~lIe~a~~~k~~~~i 1175 (2005)
T COG5103 1105 MVVNLA-KFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEKVDKIAMENQDVACRLIERAGVSKVSESI 1175 (2005)
T ss_pred HHHHHH-HHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHHHHHHHHhchhHHHHHHHHhhhhhhHHHH
Confidence 344444 334666778899999999999999999995433 4899999999965544433
No 22
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=25.95 E-value=2.7e+02 Score=24.64 Aligned_cols=65 Identities=25% Similarity=0.438 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHHHhHHHHhcCCCCCChhhhhhhhhhhhhhhhhccccchhhHHHHHHHHhHHHHHHH-HHHHHHH-HHH
Q 008852 106 HNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKE-LNTYAMR-VRE 183 (551)
Q Consensus 106 ~~~~v~el~RgIR~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~~IVqai~llddLDke-In~~~~r-vRE 183 (551)
+++.|.|++..||.+++.++. |+++. |.+.|..++|.|...-++| ||.-+|| +|.
T Consensus 15 SGnSvsEVL~~~k~N~D~~~a-L~~ET----------------------KaEr~~R~~I~LA~k~Ek~r~~~tsirp~rk 71 (97)
T PF11043_consen 15 SGNSVSEVLDNIKNNYDAFMA-LPPET----------------------KAERMYRRDIQLAEKQEKERINQTSIRPFRK 71 (97)
T ss_pred cCccHHHHHHHHHHHHHHHHc-CChhh----------------------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 466789999999999999985 34321 2334566667766555554 4555554 344
Q ss_pred HHhccCccch
Q 008852 184 WYGWHFPELA 193 (551)
Q Consensus 184 wY~~hFPEL~ 193 (551)
---.+|||..
T Consensus 72 at~~~f~eid 81 (97)
T PF11043_consen 72 ATYTKFPEID 81 (97)
T ss_pred hhhhcccccC
Confidence 4446899854
No 23
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.17 E-value=75 Score=35.75 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHhh
Q 008852 244 VSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHG 300 (551)
Q Consensus 244 lse~Dl~~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~A 300 (551)
++++||..|..||++|- ...-|+.+|-||++|-
T Consensus 21 ~~eedw~ai~~fceqin------------------------kdp~gp~lAv~LlaHK 53 (594)
T KOG1086|consen 21 NDEEDWKAIDGFCEQIN------------------------KDPEGPLLAVRLLAHK 53 (594)
T ss_pred chHHHHHHHHHHHHHHh------------------------cCCCCchhHHHHHHhh
Confidence 48999999999999983 2456999999999984
No 24
>PRK09772 transcriptional antiterminator BglG; Provisional
Probab=23.91 E-value=6.4e+02 Score=25.85 Aligned_cols=19 Identities=11% Similarity=0.157 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhccCccch
Q 008852 175 NTYAMRVREWYGWHFPELA 193 (551)
Q Consensus 175 n~~~~rvREwY~~hFPEL~ 193 (551)
..+..++.+.|++.||+=+
T Consensus 135 ~~~~~~i~~~~~i~lp~~E 153 (278)
T PRK09772 135 EEALTIIDKRLGVQLPKDE 153 (278)
T ss_pred HHHHHHHHHHhCCCCCHHH
Confidence 4566778889999999655
No 25
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=22.85 E-value=1e+02 Score=25.32 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhch
Q 008852 250 LNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGE 290 (551)
Q Consensus 250 ~~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~ 290 (551)
..|+.+.++.+.++-.+.+..++|..+- .|-|.+|.+|-.
T Consensus 2 ~~Vq~lIE~Cl~~yMsk~E~v~~L~~~a-~I~P~~T~~VW~ 41 (57)
T TIGR01589 2 DLVQNRIETCIQGYMSKEETVSFLFENA-GISPKFTRFVWY 41 (57)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHc-CCCchhHHHHHH
Confidence 3578899999999999999999998776 899999988743
No 26
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=22.57 E-value=45 Score=31.92 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhccCccchhhccCcHHHHHHHHHhcC
Q 008852 174 LNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGD 211 (551)
Q Consensus 174 In~~~~rvREwY~~hFPEL~~Iv~d~~~YakvV~~ig~ 211 (551)
.++.|.|+++||+..-|+++.| ++|..|-+.+..|-+
T Consensus 46 ~~~~~~rl~~ly~kil~~~eqI-pkn~ayRk~Tesit~ 82 (145)
T KOG3365|consen 46 CENPHERLRDLYTKILDVLEQI-PKNAAYRKYTESITN 82 (145)
T ss_pred cCCHHHHHHHHHHHhHHHHHHc-chhhhhhHHHHHHHH
Confidence 4678999999999999999985 899999888766643
No 27
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=20.78 E-value=7.3e+02 Score=24.00 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=59.3
Q ss_pred cCCCHHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCeEEEeccchhHHHHhhh-CCccccchHHHHHHHHHHHhHHHHhcC
Q 008852 49 KFENTSEALKAATCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKL-KIECVHNNAVMELMRGVRSQLTELISG 127 (551)
Q Consensus 49 ~F~~~~~Al~~~~~i~eg~~~~~L~~fL~~~~~~~~L~V~D~kL~~~I~~~l-~i~~~~~~~v~el~RgIR~~~~~ll~~ 127 (551)
+..+.... =..-+.-|.+++.|+.||-..+... +=.++++.+...+ ++.......+.-.+..+=-++.++. |
T Consensus 70 ~~~~~~~e--l~~lLltG~~s~~l~~fL~~~l~er----glKr~~k~~~~~y~~i~~l~~~~l~pa~erl~~~l~~L~-G 142 (210)
T PF12896_consen 70 GEGSLQDE--LLDLLLTGHASPALKQFLVNQLGER----GLKRWEKAVDSAYSSIRKLLFEHLIPALERLIVLLSELR-G 142 (210)
T ss_pred CCCcHHHH--HHHHHHhcCCCHHHHHHHHHhcCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence 34444433 3456778999999999998665210 0124455554443 2332333333333333333444443 3
Q ss_pred CCCCC-hhhhhhhhhhhhhhhhhccccchhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008852 128 LAGQD-LQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVR 182 (551)
Q Consensus 128 l~~~d-~~~~~lgLshslsr~Klk~s~~k~D~~IVqai~llddLDkeIn~~~~rvR 182 (551)
+..-. ...-.+||..+ .+.---+.+..++..+..++..|+.+...|..|++
T Consensus 143 l~~~~~~~~~~lgl~~~----~~~~~~~~~~~l~~~~~~l~~~i~~~~~~f~~F~~ 194 (210)
T PF12896_consen 143 LSRWSQDRFSGLGLDES----QLEELLDAAQSLLLKAHELLQVINRELKQFKAFFS 194 (210)
T ss_pred ccccccccccccCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32111 11111333221 11112234455666677777777777766665544
Done!