BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008853
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 103/472 (21%), Positives = 198/472 (41%), Gaps = 76/472 (16%)
Query: 72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131
K+E+ DL W +NG V E + E+ + A+ D++A + VP
Sbjct: 72 GKREDYFPDLXKWASENG---ASVEGFEXVNFKEEGFGLR---ATRDIKAEELFLWVPRK 125
Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188
L+ T+E N + L + +++ + LA +L+ E+ SFW PYI+ L +
Sbjct: 126 LLXTVESA-KNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSFWQPYIQTLPSE-- 181
Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY- 247
++PL + E E+ YL + ++ + + R+Y +F + Q +P+
Sbjct: 182 -----YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY-----AYFY--KVIQTHPHA 229
Query: 248 -DIP-TEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPL 305
+P ++FT+E ++ A +V + R P L+ L C T +
Sbjct: 230 NKLPLKDSFTYEDYRWAVSSVXT------RQNQIPTEDGSRVTLALIPLWDXCNHTNGLI 283
Query: 306 SPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVW 365
+ +N ++ R V L + ++AGE I ++
Sbjct: 284 TTGYNLEDD-----RCECVAL---------------------------QDFRAGEQIYIF 311
Query: 366 CGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHA 425
G + N++ +I+ GF ++N +DR+ ++ ++ D Y K V R G + VF +H
Sbjct: 312 YGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVFALHF 371
Query: 426 GREKEAISDMLPYLRL---------GYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLA 476
E + +L +LR+ ++ S + + + PVS E + L
Sbjct: 372 -TEPPISAQLLAFLRVFCXTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLE 430
Query: 477 DYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTA 528
D L Y T+ ED+++L +++L + + A +L EK++L ++ A
Sbjct: 431 DRASLLLKTYKTTIEEDKSVLKNHDLSVRAKXAIKLRLGEKEILEKAVKSAA 482
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 9/170 (5%)
Query: 357 KAGESIVV-WCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGK 415
KAGE + + + + N++L ++YGF++ + + ++ DP + DK VA+ NG
Sbjct: 234 KAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGF 293
Query: 416 LSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSE--MQSVI--SSLGPI-CPVSPCMERA 470
F + R +LPYLRL + T ++S+ + G + VS E
Sbjct: 294 AQTAYFDIFYNRTLPP--GLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEEL 351
Query: 471 VLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKML 520
+ + + K+ LAGY T+ +D L + NL + +A + EK +L
Sbjct: 352 LCKAVREACKSALAGYHTTIEQDRE-LKEGNLDSRLAIAVGIREGEKMVL 400
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 9/170 (5%)
Query: 357 KAGESIVV-WCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGK 415
KAGE + + + + N++L ++YGF++ + + ++ DP + DK VA+ NG
Sbjct: 230 KAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGF 289
Query: 416 LSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSE--MQSVI--SSLGPI-CPVSPCMERA 470
F + R +LPYLRL + T ++S+ + G + VS E
Sbjct: 290 AQTAYFDIFYNRTLPP--GLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEEL 347
Query: 471 VLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKML 520
+ + + K+ LAGY T+ +D L + NL + +A + EK +L
Sbjct: 348 LCKAVREACKSALAGYHTTIEQDRE-LKEGNLDSRLAIAVGIREGEKMVL 396
>pdb|1MZH|A Chain A, Qr15, An Aldolase
pdb|1MZH|B Chain B, Qr15, An Aldolase
Length = 225
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 211 SPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCV 270
+ T ++ E E ++ ELD VW + S F+ YD E EIF++ AV +
Sbjct: 67 NKTSVKVKEAVEAVRDGAQELDIVWNL--SAFKSEKYDFVVEELK-EIFRETPSAVHKVI 123
Query: 271 VHLQRCGCTPQMGTESFASHL---VHLQTSCTTTRTPLSPTHNPKEKVSLARRFA 322
V TP + E + + T T +P E+V L + A
Sbjct: 124 VE------TPYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSA 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,271,749
Number of Sequences: 62578
Number of extensions: 583866
Number of successful extensions: 1342
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1335
Number of HSP's gapped (non-prelim): 8
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)