Query 008853
Match_columns 551
No_of_seqs 192 out of 1219
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 17:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 3.4E-35 7.5E-40 318.9 29.2 331 158-534 112-453 (472)
2 KOG1338 Uncharacterized conser 100.0 3.6E-32 7.8E-37 272.7 23.7 290 76-413 7-312 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.8 5.2E-18 1.1E-22 152.0 14.0 122 396-520 1-128 (128)
4 PF00856 SET: SET domain; Int 99.5 9.1E-14 2E-18 127.4 8.5 49 319-367 111-162 (162)
5 smart00317 SET SET (Su(var)3-9 97.6 5.8E-05 1.3E-09 65.3 4.4 46 321-366 68-116 (116)
6 KOG2589 Histone tail methylase 87.0 0.65 1.4E-05 48.1 3.8 54 321-387 192-247 (453)
7 KOG1085 Predicted methyltransf 86.0 0.62 1.3E-05 46.7 2.9 49 328-376 335-386 (392)
8 smart00317 SET SET (Su(var)3-9 66.7 4.1 9E-05 34.5 2.2 26 112-137 13-38 (116)
9 KOG1080 Histone H3 (Lys4) meth 64.1 7 0.00015 46.5 4.0 41 327-367 940-983 (1005)
10 KOG4442 Clathrin coat binding 64.1 7.5 0.00016 43.8 4.0 40 329-368 196-238 (729)
11 KOG1079 Transcriptional repres 60.0 8 0.00017 43.4 3.3 39 329-367 668-709 (739)
12 COG2940 Proteins containing SE 50.2 8.6 0.00019 42.4 1.6 42 327-368 406-450 (480)
13 KOG2461 Transcription factor B 43.8 21 0.00046 38.3 3.3 35 345-379 121-155 (396)
14 KOG1083 Putative transcription 39.2 33 0.00071 40.7 4.1 35 335-369 1260-1296(1306)
15 COG1188 Ribosome-associated he 36.2 33 0.00071 29.4 2.6 18 351-368 44-61 (100)
16 KOG1338 Uncharacterized conser 33.8 5.2 0.00011 42.2 -3.0 76 320-398 269-348 (466)
17 TIGR02059 swm_rep_I cyanobacte 29.4 82 0.0018 26.9 3.9 29 341-369 70-98 (101)
18 KOG3429 Predicted peptidyl-tRN 26.9 2E+02 0.0044 26.9 6.2 52 467-523 111-163 (172)
19 PF10281 Ish1: Putative stress 20.7 91 0.002 21.4 2.2 16 78-93 6-21 (38)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=318.94 Aligned_cols=331 Identities=33% Similarity=0.416 Sum_probs=261.3
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHhcCcCcCCCccCcCCCCCCCHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008853 158 ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFM 237 (551)
Q Consensus 158 ~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~Ws~~El~~L~gt~l~~~v~~~~~~i~~~y~~l~~~~~~ 237 (551)
..++++|+++...+..|.|++|+..||. .+++|++|..+++..|++++....+..++..++..|.++..++..
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQS 184 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHh
Confidence 7899999999998888999999999999 579999999999999999999999988888888877776665433
Q ss_pred hhhhhhcCCCCCCCCCCCHHHHHHHHHHhhhceeeccccCCCCCCCCcchhhhcccccccccCCCCCCCCCCCCcccccc
Q 008853 238 AGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPLSPTHNPKEKVSL 317 (551)
Q Consensus 238 ~~~l~~~~p~~~~~~~~t~e~f~wA~~~V~SRa~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (551)
....+... ..+.++++.|.||+++|+||+|+...... ...+ +-
T Consensus 185 ~~~~~~~~----~~d~~~~~~~~w~~~~~~sr~~~~~~~~~--------------------------------~~~~-~~ 227 (472)
T KOG1337|consen 185 HPSLFGSD----LFDTFTFSAFKWAYSIVNSRAFYLPSLQR--------------------------------LTAG-DP 227 (472)
T ss_pred cccccccc----ccCccchHHHHHHHHHHhhhhhccccccc--------------------------------cccC-CC
Confidence 22222221 12348999999999999999999862100 0000 11
Q ss_pred cccccccccCccccCCCcccceeEeeeCCeEEEEEcccCCCCCeEEeecCCCChHHHHHhcCcccCCCCCCeEEEEEecC
Q 008853 318 ARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALN 397 (551)
Q Consensus 318 ~~~~~LvP~~DmlNh~~~~~~a~~~~~~~~~~l~a~r~i~~GeEvfi~YG~~sN~~LL~~YGFv~~~Np~D~v~l~l~l~ 397 (551)
....+|+|++||+||......+.++..++.+.+++.++|++||||||+||+++|++||++||||.++||+|.|.|.+.++
T Consensus 228 ~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~ 307 (472)
T KOG1337|consen 228 DDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALP 307 (472)
T ss_pred CcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeeccc
Confidence 24679999999999965555667777777999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHcCCCcccEEEEEeCCccchHhhhhHHHHhhcC---CChHHHHHHHHh-------cCCCCCCChHH
Q 008853 398 TEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYV---SDTSEMQSVISS-------LGPICPVSPCM 467 (551)
Q Consensus 398 ~~d~~~~~k~~lL~~~g~~~~~~f~l~~~~~~~~~~~Ll~~lRl~~~---~~~~El~~~~~~-------~~~~~~~s~~n 467 (551)
..++.+..+.+.+..++......|.+...++.. .+++...++..+ ....++...... .....+++..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T KOG1337|consen 308 PEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPV--SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDN 385 (472)
T ss_pred ccccchhHHHHHHhhcCCCCCceEEEeecCCch--hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecc
Confidence 999999999999999998877888877665432 333333332222 112132222211 11345678889
Q ss_pred HHHHHHHHHHH-HHHHHhcCCCCHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008853 468 ERAVLDQLADY-FKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLL 534 (551)
Q Consensus 468 E~~vl~~L~~~-l~~~L~~y~tt~eeDe~~L~~~~~s~r~~~A~~~R~~EK~IL~~~l~~l~~~~~~l 534 (551)
|...+..+... +...+..+.+++++++..+.+..++.+..++..++..+|+||.+.+..+..+...+
T Consensus 386 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l 453 (472)
T KOG1337|consen 386 EQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLL 453 (472)
T ss_pred hHHHHHHHhhccccchhcccchhhhhhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhc
Confidence 99999988888 88888899999999999998887889999999999999999999999998554444
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=272.66 Aligned_cols=290 Identities=19% Similarity=0.227 Sum_probs=218.7
Q ss_pred cchhHHHHHHHHCC-CCCC-CcEEeecCCCCC-CCCceeEEEEccCCCCCCeEEEcCccCccchhcccC---CchHHH-h
Q 008853 76 EDLGDLKSWMHKNG-LPPC-KVILKEKPSHNE-KHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLG---NETIAE-L 148 (551)
Q Consensus 76 ~~~~~l~~Wl~~~G-~~~~-~v~i~~~~~~~~-~GrG~~Gv~At~dI~~ge~ll~IP~~~~lt~~~a~~---~~~~~~-l 148 (551)
+-...|+.|++..+ .+.+ +|++...+...+ .|+ |++|+++|++|+.+|.+|++++++..+..- -|+..+ +
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~---g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~ 83 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGA---GIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVL 83 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhccc---ceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHH
Confidence 34789999999987 6665 888888766432 244 499999999999999999999999876532 122222 3
Q ss_pred hhhCCCCchHHHHHHHHHHHhcCCCCCcHHHHHhcCcCcCCCccCcCCCCCCCHHHHhhccCCchHHHHHHHHHHHHHHH
Q 008853 149 LTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREY 228 (551)
Q Consensus 149 l~~~~l~~~~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~Ws~~El~~L~gt~l~~~v~~~~~~i~~~y 228 (551)
+ +..+.|..|++.|++|...+.+|+|+||++.+|.+. .+++|+||+++|++.|..+.+++...+....++++|
T Consensus 84 L--ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~-----rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~ 156 (466)
T KOG1338|consen 84 L--NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPA-----RMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDF 156 (466)
T ss_pred h--hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChh-----hcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHH
Confidence 3 567899999999999997666699999999999986 699999999999996655555665888888999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCCCCCHHHHHHHHHHhhhceeeccccCCCCCCCCcchhhhcccccccccCCCCCCCCC
Q 008853 229 NELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPLSPT 308 (551)
Q Consensus 229 ~~l~~~~~~~~~l~~~~p~~~~~~~~t~e~f~wA~~~V~SRa~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~ 308 (551)
..... ++.+.+|..| ..+++|+|.++++++.+.+|.+..- .+. +..
T Consensus 157 i~~i~------pf~~~~p~vf--s~~slEdF~y~~Al~laysfdve~~------~s~--------------------~~~ 202 (466)
T KOG1338|consen 157 IFVIQ------PFKQHCPIVF--SRPSLEDFMYAYALGLAYSFDVEFL------LSL--------------------DNL 202 (466)
T ss_pred HHHHH------HHHHhCcchh--cccCHHHHHHHHHHHHHHheeeehh------cch--------------------hhh
Confidence 87754 5677888654 4589999999999999999987620 000 000
Q ss_pred CCCcccccccccccccccCccccCCCcccceeEeeeCCeEEEEEcccCCCCCeEEeecCCCChHHHHHhcCcccCCCCC-
Q 008853 309 HNPKEKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPY- 387 (551)
Q Consensus 309 ~~~~~~~~~~~~~~LvP~~DmlNh~~~~~~a~~~~~~~~~~l~a~r~i~~GeEvfi~YG~~sN~~LL~~YGFv~~~Np~- 387 (551)
..+. +.+. -..+|+|.+||+||....|++.+.++++|+.|+|+|+|.+|+||+++||.|+|+ |++||.+.-.-.|
T Consensus 203 eee~-e~e~-ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm 278 (466)
T KOG1338|consen 203 EEES-EIEC-NGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHM 278 (466)
T ss_pred hhhh-cccc-CcccccchhhhhccchhhcccceeccCcceeeeecCCCCCccccccccccCcch--hhhhhhhccceeee
Confidence 0000 1111 246899999999998777999999999999999999999999999999999999 8899988764332
Q ss_pred C--------eEEEEEecCCCCcchHHHHHHHHHc
Q 008853 388 D--------RLVVEAALNTEDPQYQDKRMVAQRN 413 (551)
Q Consensus 388 D--------~v~l~l~l~~~d~~~~~k~~lL~~~ 413 (551)
+ .+.+-..++.+++.+..|..+++.+
T Consensus 279 ~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~ 312 (466)
T KOG1338|consen 279 VWGILKLYNIVQILMDVPNDDTMRNMRLILLQLH 312 (466)
T ss_pred ecceeecchHHHHHhcCCCcchHHHHHHHHHHhc
Confidence 2 2222234455566666665544443
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.77 E-value=5.2e-18 Score=151.98 Aligned_cols=122 Identities=32% Similarity=0.483 Sum_probs=105.2
Q ss_pred cCCCCcchHHHHHHHHHcCCCcccEEEEEeCCccchHhhhhHHHHhhcCCChHHHHHHHHhcC------CCCCCChHHHH
Q 008853 396 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLG------PICPVSPCMER 469 (551)
Q Consensus 396 l~~~d~~~~~k~~lL~~~g~~~~~~f~l~~~~~~~~~~~Ll~~lRl~~~~~~~El~~~~~~~~------~~~~~s~~nE~ 469 (551)
++++||+++.|.++|+.+|+....+|.++.++. ++.+|++++||++|+ ++|+..+..... ...++|..||.
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~--~~~~Ll~~lRv~~~~-~~e~~~~~~~~~~~~~~~~~~~ls~~nE~ 77 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGP--LPPELLAALRVLLMT-EEELRALKSLADSSEWSDRSEPLSPENEI 77 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSS--SHHHHHHHHHHHHSC-HHHHHHHHHCGTTTHCCHCCC-SBHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCC--CCHHHHHHHHHHHcC-hHHHHHHHHhhcccccccccCCCchhhHH
Confidence 367899999999999999998778999998775 689999999999995 788877665442 23578999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 008853 470 AVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKML 520 (551)
Q Consensus 470 ~vl~~L~~~l~~~L~~y~tt~eeDe~~L~~~~~s~r~~~A~~~R~~EK~IL 520 (551)
+++++|...|..+|+.|+||++||+++|.++....++++|++||++||+||
T Consensus 78 ~~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 78 AALQFLIDLCEARLSAYPTTLEEDEELLQSNDLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCCcHHHHHHHHHHHHhHhcC
Confidence 999999999999999999999999999999887788999999999999998
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.48 E-value=9.1e-14 Score=127.38 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=39.3
Q ss_pred ccccccccCccccCCC-cccceeEee--eCCeEEEEEcccCCCCCeEEeecC
Q 008853 319 RRFALVPLGPPLLAYS-SKCKAMLAA--VDDAVQLVVDRPYKAGESIVVWCG 367 (551)
Q Consensus 319 ~~~~LvP~~DmlNh~~-~~~~a~~~~--~~~~~~l~a~r~i~~GeEvfi~YG 367 (551)
...+|+|++||+||.+ ++|.+.+.. .++.+.++|.++|++|||||++||
T Consensus 111 ~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 111 DGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 4689999999999965 355555542 578999999999999999999999
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.63 E-value=5.8e-05 Score=65.29 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=36.2
Q ss_pred ccccccCccccCCC-cccceeEeeeCC--eEEEEEcccCCCCCeEEeec
Q 008853 321 FALVPLGPPLLAYS-SKCKAMLAAVDD--AVQLVVDRPYKAGESIVVWC 366 (551)
Q Consensus 321 ~~LvP~~DmlNh~~-~~~~a~~~~~~~--~~~l~a~r~i~~GeEvfi~Y 366 (551)
..+.|+++++||.+ +++...+...++ .+.++|.|+|++||||+++|
T Consensus 68 ~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 44899999999965 344444444444 59999999999999999999
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=87.01 E-value=0.65 Score=48.08 Aligned_cols=54 Identities=28% Similarity=0.431 Sum_probs=39.1
Q ss_pred ccccccCccccCCC-cccceeEeeeC-CeEEEEEcccCCCCCeEEeecCCCChHHHHHhcCcccCCCCC
Q 008853 321 FALVPLGPPLLAYS-SKCKAMLAAVD-DAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPY 387 (551)
Q Consensus 321 ~~LvP~~DmlNh~~-~~~~a~~~~~~-~~~~l~a~r~i~~GeEvfi~YG~~sN~~LL~~YGFv~~~Np~ 387 (551)
.-|=|-+ ++||++ ++|+ |...+ +...+++.|||++||||.--||. ||.-++|.+
T Consensus 192 LwLGPaa-fINHDCrpnCk--Fvs~g~~tacvkvlRDIePGeEITcFYgs----------~fFG~~N~~ 247 (453)
T KOG2589|consen 192 LWLGPAA-FINHDCRPNCK--FVSTGRDTACVKVLRDIEPGEEITCFYGS----------GFFGENNEE 247 (453)
T ss_pred heeccHH-hhcCCCCCCce--eecCCCceeeeehhhcCCCCceeEEeecc----------cccCCCCce
Confidence 3444544 579854 3343 44444 78999999999999999999997 677666653
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=85.98 E-value=0.62 Score=46.67 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=36.4
Q ss_pred ccccCCC-cccceeEe--eeCCeEEEEEcccCCCCCeEEeecCCCChHHHHH
Q 008853 328 PPLLAYS-SKCKAMLA--AVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLI 376 (551)
Q Consensus 328 DmlNh~~-~~~~a~~~--~~~~~~~l~a~r~i~~GeEvfi~YG~~sN~~LL~ 376 (551)
-++||.. .+|...+- .....+.+.|.++|.+|||+...||++|-+-++.
T Consensus 335 RLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 335 RLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchhHHhh
Confidence 3578853 34544332 2345799999999999999999999998876654
No 8
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=66.74 E-value=4.1 Score=34.45 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.0
Q ss_pred EEEEccCCCCCCeEEEcCccCccchh
Q 008853 112 YVAASEDLQAGDAAFSVPNSLVVTLE 137 (551)
Q Consensus 112 Gv~At~dI~~ge~ll~IP~~~~lt~~ 137 (551)
|++|+++|++|+.|+..+-..+...+
T Consensus 13 gl~a~~~i~~g~~i~~~~g~~~~~~~ 38 (116)
T smart00317 13 GVRATEDIPKGEFIGEYVGEIITSEE 38 (116)
T ss_pred EEEECCccCCCCEEEEEEeEEECHHH
Confidence 59999999999999998887776544
No 9
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=64.14 E-value=7 Score=46.52 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=31.9
Q ss_pred CccccCCC-cccceeEeeeC--CeEEEEEcccCCCCCeEEeecC
Q 008853 327 GPPLLAYS-SKCKAMLAAVD--DAVQLVVDRPYKAGESIVVWCG 367 (551)
Q Consensus 327 ~DmlNh~~-~~~~a~~~~~~--~~~~l~a~r~i~~GeEvfi~YG 367 (551)
+-++||.+ +||-|.....+ ..+++.|.|+|.+||||+-.|-
T Consensus 940 Ar~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 940 ARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 34689965 57877655433 4789999999999999999885
No 10
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=7.5 Score=43.78 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=29.6
Q ss_pred cccCCC-ccccee-EeeeC-CeEEEEEcccCCCCCeEEeecCC
Q 008853 329 PLLAYS-SKCKAM-LAAVD-DAVQLVVDRPYKAGESIVVWCGP 368 (551)
Q Consensus 329 mlNh~~-~~~~a~-~~~~~-~~~~l~a~r~i~~GeEvfi~YG~ 368 (551)
++||.+ ++|.+. |+..+ -.+=|.+.+.|++||||...|+-
T Consensus 196 FiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 196 FINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred hhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc
Confidence 579965 566653 65543 35667899999999999999973
No 11
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=60.02 E-value=8 Score=43.39 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=29.3
Q ss_pred cccCCC-cccce--eEeeeCCeEEEEEcccCCCCCeEEeecC
Q 008853 329 PLLAYS-SKCKA--MLAAVDDAVQLVVDRPYKAGESIVVWCG 367 (551)
Q Consensus 329 mlNh~~-~~~~a--~~~~~~~~~~l~a~r~i~~GeEvfi~YG 367 (551)
++||.. ++|-| .+-..+..+-+.|.|.|.+|||+|..|+
T Consensus 668 FANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 668 FANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 568743 34433 3445567888999999999999999996
No 12
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=50.17 E-value=8.6 Score=42.39 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=29.6
Q ss_pred CccccCCCc-ccceeEeeeCC--eEEEEEcccCCCCCeEEeecCC
Q 008853 327 GPPLLAYSS-KCKAMLAAVDD--AVQLVVDRPYKAGESIVVWCGP 368 (551)
Q Consensus 327 ~DmlNh~~~-~~~a~~~~~~~--~~~l~a~r~i~~GeEvfi~YG~ 368 (551)
.=++||... ++.+......+ .+.+++.++|++||||.+.||.
T Consensus 406 ~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 406 ARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred cceeecCCCCCcceecccccccceeeecccccchhhhhhcccccc
Confidence 336788542 44443333333 6778899999999999999986
No 13
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=43.76 E-value=21 Score=38.26 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=31.4
Q ss_pred CCeEEEEEcccCCCCCeEEeecCCCChHHHHHhcC
Q 008853 345 DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG 379 (551)
Q Consensus 345 ~~~~~l~a~r~i~~GeEvfi~YG~~sN~~LL~~YG 379 (551)
+..+.+++.|+|.+|||+.++||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 46788999999999999999999988888888887
No 14
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=39.24 E-value=33 Score=40.69 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=26.0
Q ss_pred cccce-eEeeeC-CeEEEEEcccCCCCCeEEeecCCC
Q 008853 335 SKCKA-MLAAVD-DAVQLVVDRPYKAGESIVVWCGPQ 369 (551)
Q Consensus 335 ~~~~a-~~~~~~-~~~~l~a~r~i~~GeEvfi~YG~~ 369 (551)
++|+. .|...+ -.+-+.|.+||.+||||+..|-.+
T Consensus 1260 PNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1260 PNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred CCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 55663 455443 356789999999999999998654
No 15
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=36.20 E-value=33 Score=29.36 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=16.3
Q ss_pred EEcccCCCCCeEEeecCC
Q 008853 351 VVDRPYKAGESIVVWCGP 368 (551)
Q Consensus 351 ~a~r~i~~GeEvfi~YG~ 368 (551)
++...++.||+|.+.||.
T Consensus 44 KpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 44 KPSKEVKVGDILTIRFGN 61 (100)
T ss_pred ccccccCCCCEEEEEeCC
Confidence 677889999999999987
No 16
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.80 E-value=5.2 Score=42.16 Aligned_cols=76 Identities=14% Similarity=-0.030 Sum_probs=56.8
Q ss_pred cccccccCccccCCCccccee--EeeeCCeEEEEEcccCCCCCeEEeecCCCChHHHHHhcC-ccc-CCCCCCeEEEEEe
Q 008853 320 RFALVPLGPPLLAYSSKCKAM--LAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG-FVD-EDNPYDRLVVEAA 395 (551)
Q Consensus 320 ~~~LvP~~DmlNh~~~~~~a~--~~~~~~~~~l~a~r~i~~GeEvfi~YG~~sN~~LL~~YG-Fv~-~~Np~D~v~l~l~ 395 (551)
..++.|+.+|++-...-++.. +-...+..++++.|.+ |.|..++|+.+.+.++...|| |+. +.-|++.+-+ +.
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv-~g 345 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV-IG 345 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee-ee
Confidence 578999999987544334432 2234567888999988 999999999999999999999 554 3468887766 35
Q ss_pred cCC
Q 008853 396 LNT 398 (551)
Q Consensus 396 l~~ 398 (551)
+++
T Consensus 346 lpq 348 (466)
T KOG1338|consen 346 LPQ 348 (466)
T ss_pred chh
Confidence 544
No 17
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=29.36 E-value=82 Score=26.93 Aligned_cols=29 Identities=10% Similarity=0.283 Sum_probs=23.9
Q ss_pred EeeeCCeEEEEEcccCCCCCeEEeecCCC
Q 008853 341 LAAVDDAVQLVVDRPYKAGESIVVWCGPQ 369 (551)
Q Consensus 341 ~~~~~~~~~l~a~r~i~~GeEvfi~YG~~ 369 (551)
.+.....+.+...+.|..||||.++|-.-
T Consensus 70 V~~s~ktVTLTL~~~V~~Gq~VTVsYt~p 98 (101)
T TIGR02059 70 LGGSNTTITLTLAQVVEDGDEVTLSYTKN 98 (101)
T ss_pred EcCcccEEEEEecccccCCCEEEEEeeCC
Confidence 34445689999999999999999999653
No 18
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=26.88 E-value=2e+02 Score=26.86 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CCHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHH
Q 008853 467 MERAVLDQLADYFKARLAGYP-ATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNAC 523 (551)
Q Consensus 467 nE~~vl~~L~~~l~~~L~~y~-tt~eeDe~~L~~~~~s~r~~~A~~~R~~EK~IL~~~ 523 (551)
|-..+++-|++++.+.-..-+ .+-+||.+.+ ..++..|.+=|+.||++....
T Consensus 111 NiaDcleKlr~~I~~~~~~~~~~~teE~~kk~-----r~~~e~an~eRL~~Kk~~s~k 163 (172)
T KOG3429|consen 111 NIADCLEKLRDIIRAAEQTPPVDPTEETIKKI-----RIRKEKANRERLQEKKVHSDK 163 (172)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHhhhHH
Confidence 345677778888877765444 5557887766 467888999999999987754
No 19
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.67 E-value=91 Score=21.40 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=13.9
Q ss_pred hhHHHHHHHHCCCCCC
Q 008853 78 LGDLKSWMHKNGLPPC 93 (551)
Q Consensus 78 ~~~l~~Wl~~~G~~~~ 93 (551)
.++|.+||.++|+..+
T Consensus 6 ~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 4689999999999875
Done!