Query 008855
Match_columns 551
No_of_seqs 275 out of 1237
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 17:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2476 Uncharacterized conser 100.0 7E-115 1E-119 893.5 37.5 465 1-551 55-528 (528)
2 KOG2477 Uncharacterized conser 100.0 3.6E-48 7.7E-53 401.9 15.1 217 334-551 405-625 (628)
3 KOG2863 RNA lariat debranching 100.0 5.8E-41 1.3E-45 337.3 7.8 179 2-194 66-264 (456)
4 cd00844 MPP_Dbr1_N Dbr1 RNA la 100.0 1.8E-38 4E-43 320.1 16.7 174 2-188 64-261 (262)
5 PF04677 CwfJ_C_1: Protein sim 100.0 9.2E-35 2E-39 260.1 13.9 116 331-446 6-121 (121)
6 cd07380 MPP_CWF19_N Schizosacc 100.0 1.3E-28 2.8E-33 228.7 9.0 77 101-180 69-150 (150)
7 PF04676 CwfJ_C_2: Protein sim 100.0 2.6E-28 5.7E-33 211.1 9.2 96 455-550 1-98 (98)
8 PRK10687 purine nucleoside pho 99.7 7.8E-18 1.7E-22 150.8 10.0 101 335-435 2-109 (119)
9 COG0537 Hit Diadenosine tetrap 99.7 1.2E-16 2.6E-21 146.8 10.8 100 336-435 1-106 (138)
10 cd01275 FHIT FHIT (fragile his 99.6 1.3E-15 2.8E-20 137.6 10.8 99 338-436 1-106 (126)
11 cd01277 HINT_subgroup HINT (hi 99.6 1.7E-15 3.7E-20 131.4 10.9 97 337-433 1-103 (103)
12 cd01276 PKCI_related Protein K 99.6 9E-15 1.9E-19 127.4 10.2 96 337-432 1-103 (104)
13 PF01230 HIT: HIT domain; Int 99.5 5.3E-14 1.1E-18 121.4 10.0 86 349-434 5-96 (98)
14 cd01278 aprataxin_related apra 99.5 3.1E-13 6.7E-18 117.9 10.3 95 337-431 1-103 (104)
15 KOG3275 Zinc-binding protein o 99.5 2.4E-13 5.2E-18 117.8 8.9 98 335-432 15-118 (127)
16 cd00468 HIT_like HIT family: H 99.4 8.1E-13 1.8E-17 110.6 8.6 80 353-432 1-86 (86)
17 TIGR00209 galT_1 galactose-1-p 99.2 5.6E-11 1.2E-15 125.0 9.1 99 335-433 193-302 (347)
18 PRK11720 galactose-1-phosphate 99.2 6.2E-11 1.3E-15 124.6 9.0 99 335-433 193-302 (346)
19 KOG3379 Diadenosine polyphosph 99.0 2.3E-09 5E-14 95.7 10.5 86 348-433 15-106 (150)
20 cd00608 GalT Galactose-1-phosp 99.0 7.3E-10 1.6E-14 116.1 8.3 101 335-435 183-296 (329)
21 PLN02643 ADP-glucose phosphory 99.0 1.2E-09 2.7E-14 114.6 9.8 97 335-434 197-303 (336)
22 PF11969 DcpS_C: Scavenger mRN 98.9 1.6E-09 3.4E-14 96.8 6.0 99 337-436 1-107 (116)
23 cd07392 MPP_PAE1087 Pyrobaculu 98.7 2.5E-07 5.4E-12 87.8 14.4 126 8-158 49-174 (188)
24 KOG4359 Protein kinase C inhib 98.2 2.3E-06 4.9E-11 76.9 5.7 103 335-438 30-141 (166)
25 cd07388 MPP_Tt1561 Thermus the 98.1 3.3E-05 7.2E-10 76.8 13.0 139 9-182 60-208 (224)
26 COG1085 GalT Galactose-1-phosp 96.8 0.0027 5.7E-08 66.4 7.1 98 335-432 184-291 (338)
27 PHA03008 hypothetical protein; 96.5 0.0081 1.8E-07 57.6 7.0 96 48-157 98-204 (234)
28 PF02744 GalP_UDP_tr_C: Galact 96.4 0.0044 9.6E-08 58.9 4.7 73 336-408 13-87 (166)
29 PF14582 Metallophos_3: Metall 96.0 0.056 1.2E-06 53.6 10.1 124 9-156 87-217 (255)
30 COG2129 Predicted phosphoester 95.8 0.33 7.1E-06 48.1 14.8 143 8-181 61-205 (226)
31 cd07393 MPP_DR1119 Deinococcus 95.2 0.14 3.1E-06 51.0 10.3 126 10-163 70-211 (232)
32 cd07379 MPP_239FB Homo sapiens 94.4 0.1 2.3E-06 47.1 6.5 68 100-177 67-134 (135)
33 cd07402 MPP_GpdQ Enterobacter 93.9 0.5 1.1E-05 46.6 10.7 141 9-181 68-211 (240)
34 cd07397 MPP_DevT Myxococcus xa 93.6 0.096 2.1E-06 52.7 4.9 80 99-180 145-234 (238)
35 TIGR03729 acc_ester putative p 93.2 0.4 8.8E-06 47.8 8.7 146 10-177 60-235 (239)
36 PF05011 DBR1: Lariat debranch 92.8 0.085 1.8E-06 49.0 2.9 31 167-199 5-35 (145)
37 COG4360 APA2 ATP adenylyltrans 92.8 0.16 3.5E-06 50.4 4.9 72 356-435 90-165 (298)
38 KOG3947 Phosphoesterases [Gene 92.2 0.4 8.6E-06 48.8 6.9 119 46-180 161-281 (305)
39 KOG1595 CCCH-type Zn-finger pr 91.9 0.25 5.3E-06 54.3 5.4 103 178-318 187-293 (528)
40 cd00608 GalT Galactose-1-phosp 91.4 1.3 2.7E-05 46.8 10.2 98 336-434 38-163 (329)
41 PF00642 zf-CCCH: Zinc finger 90.3 0.083 1.8E-06 34.7 0.0 24 261-284 4-27 (27)
42 PLN03103 GDP-L-galactose-hexos 90.0 0.53 1.2E-05 50.6 5.7 71 356-434 168-243 (403)
43 KOG2958 Galactose-1-phosphate 89.4 0.72 1.6E-05 47.2 5.8 70 335-407 198-272 (354)
44 COG1085 GalT Galactose-1-phosp 86.6 3.6 7.8E-05 43.4 9.1 65 371-435 93-165 (338)
45 PLN02643 ADP-glucose phosphory 86.4 6.3 0.00014 41.7 11.0 62 373-434 110-177 (336)
46 smart00356 ZnF_C3H1 zinc finge 86.1 0.49 1.1E-05 30.4 1.6 23 261-284 5-27 (27)
47 cd07403 MPP_TTHA0053 Thermus t 84.5 1.4 3.1E-05 39.7 4.5 68 102-180 57-124 (129)
48 KOG0562 Predicted hydrolase (H 83.0 1.1 2.3E-05 42.3 3.0 76 357-433 23-105 (184)
49 KOG1492 C3H1-type Zn-finger pr 80.5 1.3 2.8E-05 43.5 2.6 51 262-318 208-258 (377)
50 PF00149 Metallophos: Calcineu 79.9 1.5 3.2E-05 38.7 2.7 54 98-157 147-200 (200)
51 PRK11720 galactose-1-phosphate 79.6 12 0.00026 39.8 9.9 61 373-434 108-173 (346)
52 TIGR00209 galT_1 galactose-1-p 79.5 13 0.00028 39.6 10.1 95 336-434 50-173 (347)
53 PRK11148 cyclic 3',5'-adenosin 76.1 29 0.00064 35.2 11.3 122 9-158 83-208 (275)
54 cd07404 MPP_MS158 Microscilla 75.3 12 0.00025 34.8 7.5 57 98-158 94-150 (166)
55 cd08163 MPP_Cdc1 Saccharomyces 72.9 71 0.0015 32.4 13.0 100 59-159 120-230 (257)
56 KOG2720 Predicted hydrolase (H 71.5 3 6.6E-05 43.6 2.7 70 360-435 169-241 (431)
57 KOG1677 CCCH-type Zn-finger pr 64.6 4.8 0.0001 42.2 2.6 60 260-319 132-204 (332)
58 TIGR01530 nadN NAD pyrophospha 64.1 21 0.00045 40.4 7.7 36 363-398 409-445 (550)
59 cd07385 MPP_YkuE_C Bacillus su 63.6 27 0.00059 33.7 7.6 110 9-162 61-171 (223)
60 cd07401 MPP_TMEM62_N Homo sapi 62.9 83 0.0018 31.7 11.2 93 63-167 122-220 (256)
61 cd00838 MPP_superfamily metall 62.1 14 0.00031 31.3 4.8 52 102-161 68-119 (131)
62 cd07395 MPP_CSTP1 Homo sapiens 59.9 80 0.0017 31.5 10.5 126 10-157 85-218 (262)
63 PRK05471 CDP-diacylglycerol py 57.0 38 0.00082 34.4 7.2 91 366-460 69-169 (252)
64 cd07396 MPP_Nbla03831 Homo sap 56.7 90 0.0019 31.5 10.2 68 82-159 158-230 (267)
65 cd00840 MPP_Mre11_N Mre11 nucl 56.1 19 0.00041 34.6 5.0 50 98-159 154-203 (223)
66 PF12239 DUF3605: Protein of u 55.7 80 0.0017 29.8 8.8 66 362-428 77-155 (158)
67 PHA02546 47 endonuclease subun 54.2 47 0.001 35.1 7.9 82 9-109 74-155 (340)
68 TIGR00672 cdh CDP-diacylglycer 54.1 41 0.00089 34.1 6.9 89 368-460 70-168 (250)
69 PF00642 zf-CCCH: Zinc finger 54.1 6.9 0.00015 25.5 1.0 23 293-315 4-26 (27)
70 PF01087 GalP_UDP_transf: Gala 53.5 40 0.00086 32.4 6.6 98 336-434 52-180 (183)
71 KOG3325 Membrane coat complex 52.9 16 0.00035 34.2 3.5 43 57-108 72-114 (183)
72 cd07407 MPP_YHR202W_N Saccharo 52.3 35 0.00075 35.2 6.4 52 15-73 88-155 (282)
73 cd00839 MPP_PAPs purple acid p 46.4 69 0.0015 32.5 7.5 97 60-165 113-213 (294)
74 cd07410 MPP_CpdB_N Escherichia 46.3 31 0.00067 35.0 4.9 53 14-73 85-147 (277)
75 PF02611 CDH: CDP-diacylglycer 44.1 37 0.00081 33.9 4.9 91 367-461 41-141 (222)
76 cd00845 MPP_UshA_N_like Escher 42.9 42 0.00091 33.3 5.2 54 13-74 71-136 (252)
77 cd07406 MPP_CG11883_N Drosophi 42.7 41 0.0009 33.9 5.1 54 14-74 73-137 (257)
78 cd07408 MPP_SA0022_N Staphyloc 41.9 40 0.00088 33.9 4.9 53 14-73 72-134 (257)
79 KOG3969 Uncharacterized conser 41.7 44 0.00095 34.3 4.9 88 347-436 157-259 (310)
80 PF13483 Lactamase_B_3: Beta-l 41.3 88 0.0019 28.8 6.8 84 48-152 59-162 (163)
81 cd07412 MPP_YhcR_N Bacillus su 36.0 60 0.0013 33.4 5.2 133 45-197 120-272 (288)
82 cd07378 MPP_ACP5 Homo sapiens 34.6 1E+02 0.0023 30.9 6.6 148 10-181 69-232 (277)
83 cd07411 MPP_SoxB_N Thermus the 33.5 68 0.0015 32.4 5.0 55 12-73 83-146 (264)
84 cd07386 MPP_DNA_pol_II_small_a 32.8 96 0.0021 30.8 5.9 53 9-73 79-138 (243)
85 COG0737 UshA 5'-nucleotidase/2 32.8 1.1E+02 0.0025 34.1 7.1 155 14-197 105-280 (517)
86 KOG2494 C3H1-type Zn-finger pr 32.3 18 0.00039 37.8 0.6 55 262-319 39-96 (331)
87 cd07409 MPP_CD73_N CD73 ecto-5 31.0 80 0.0017 32.3 5.1 53 15-74 85-149 (281)
88 PF01076 Mob_Pre: Plasmid reco 30.5 1.7E+02 0.0038 28.3 7.1 45 393-437 98-145 (196)
89 cd07405 MPP_UshA_N Escherichia 29.5 91 0.002 32.0 5.2 52 15-73 78-137 (285)
90 KOG1813 Predicted E3 ubiquitin 28.8 68 0.0015 33.3 3.9 92 262-376 188-281 (313)
91 KOG4138 Unchracterized conserv 28.3 18 0.0004 30.5 -0.1 21 519-546 56-76 (96)
92 COG5152 Uncharacterized conser 28.0 24 0.00052 34.4 0.6 24 262-285 143-166 (259)
93 KOG1677 CCCH-type Zn-finger pr 23.0 42 0.00092 35.1 1.4 29 259-287 176-204 (332)
94 cd08162 MPP_PhoA_N Synechococc 23.0 1.1E+02 0.0023 32.1 4.3 58 15-73 82-164 (313)
95 PRK09558 ushA bifunctional UDP 22.8 1.2E+02 0.0027 34.1 5.2 52 15-73 112-172 (551)
96 KOG1595 CCCH-type Zn-finger pr 22.0 63 0.0014 36.1 2.4 48 271-319 208-262 (528)
97 PF03432 Relaxase: Relaxase/Mo 21.9 1.4E+02 0.003 29.3 4.8 38 393-432 72-109 (242)
98 TIGR00583 mre11 DNA repair pro 21.5 1.4E+02 0.0029 32.7 4.9 20 6-25 105-124 (405)
No 1
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.8e-115 Score=893.47 Aligned_cols=465 Identities=44% Similarity=0.751 Sum_probs=399.8
Q ss_pred CCccCCcccCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEE-CCeEEEEEccccCCCCC
Q 008855 1 MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL-HGLSVAYLSGRQSSEGQ 79 (551)
Q Consensus 1 ~~y~~G~~~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~-~GLrIa~lsG~~~~~~~ 79 (551)
++|++|.+++||||||+|+|...+.++++. ++|.|||+||||||++|++++ +||+||||||.++....
T Consensus 55 ~~ykng~~~vPiptY~~g~~~~~~~ky~~n-----------~~g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~~~~ 123 (528)
T KOG2476|consen 55 EKYKNGTKKVPIPTYFLGDNANETEKYFEN-----------SDGKEIAENLTYLGRKGTYKLASGLTIAYLSGPESSEKG 123 (528)
T ss_pred HHHhcCCccCceeEEEecCCCCccceeccc-----------CCCcccccceeeecccceEeecCCcEEEEeecccccccc
Confidence 369999999999999999999877777773 469999999999999999985 69999999999875444
Q ss_pred cCCCCCHHHHHHHHH---hhcCCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCc
Q 008855 80 QFGTYSQDDVDALRA---LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV 156 (551)
Q Consensus 80 ~~~~~~~~dv~~l~~---~~~~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~ 156 (551)
...|+.+||++|+. .+....+||||||++||.+|++. +... + +.....||.++++|+..||||||||++.++
T Consensus 124 -~~~fs~~dv~~l~~~~~~~~~~~gvDILlTseWP~~v~e~-~ss~-~--~~~~~~gs~lvs~La~~lkPRYHFa~~~~v 198 (528)
T KOG2476|consen 124 -ESKFSQADVDELRHRLDTQKEFKGVDILLTSEWPADVQER-NSSL-P--ESKRLCGSELVSELAAELKPRYHFAGSDGV 198 (528)
T ss_pred -ccccCHHHHHHHhcccccccccCCccEEEecCCcchhhhc-cccC-c--cccCCcchHHHHHHHHhcCcceEeccCCCc
Confidence 34799999999994 33567899999999999999985 2221 2 233568999999999999999999999999
Q ss_pred eeeccccccC-----CCCceeEEEeccCCCCcccceEEEEecCCCCCCCchhhhcCCCCCCCCCCCccccCCCCcccccC
Q 008855 157 FYAREPYSNV-----DAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAK 231 (551)
Q Consensus 157 fyEr~Py~~~-----~~~~~TRFi~L~~~g~~~K~kwlyAf~i~p~~~~~~~~l~~~p~~~T~~Pf~~~~~~~~~~~~~k 231 (551)
||||+||+|+ ...++||||+||++||++|+||+|||++.|+.+|.+.+|.++|+|+|+|||.... .. ..+.|
T Consensus 199 ~YErePyrn~~~~~~~~~h~TRFI~LA~vGN~ek~K~lYAfs~~P~~~~~~~el~a~Ppn~~~~Py~~~d--~~-~qs~k 275 (528)
T KOG2476|consen 199 FYEREPYRNHAALNEEAGHVTRFIALAKVGNPEKQKWLYAFSLKPMGTMELAELTAKPPNLIPNPYNLED--VA-IQSNK 275 (528)
T ss_pred eeecccccchhhhcccccceeeeeehhhcCCccccceeeeecccccccchhhhcccCCCccCCCCcchhh--hh-hhhcc
Confidence 9999999997 3789999999999999999999999999999999999999999999999996221 11 12455
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCcceeeeccCCCCCCCcccccCCchhhhhhhcccchhhhhcCCcCCCCCcc
Q 008855 232 RPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECS 311 (551)
Q Consensus 232 ~~~~~~~~~~~~r~~~~~~~~k~~~~~~~~~c~~~~~~g~~~~g~~c~~~~~~~~~~~~~~~~c~~f~~~g~~~~Gr~~~ 311 (551)
|..++ ++.+|+||+++++.+ +.+||++.
T Consensus 276 r~~~s--~~~q~ffd~~~~~~~--------------------------------------------------~~~gr~~h 303 (528)
T KOG2476|consen 276 RPNSS--ESTQYFFDMDKQQLS--------------------------------------------------KMNGRESH 303 (528)
T ss_pred CCCCC--ccceeeeccCccccc--------------------------------------------------cCCccccc
Confidence 65433 245556998632222 12233332
Q ss_pred ccCCCCCCccccccCCcccccCCCCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHH
Q 008855 312 YKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPEC 391 (551)
Q Consensus 312 ~~h~~~~~~~~~~~~~~~~~~~~~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~ 391 (551)
-+|.. +++|. +.+.++.||||++||++++||||++|+++|++||||||+.||+|||||+|++++..+++|+
T Consensus 304 ~~~~~-----kgpR~----p~~~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev 374 (528)
T KOG2476|consen 304 SDKSE-----KGPRK----PKIPPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEV 374 (528)
T ss_pred ccccc-----cCCCC----CCCCCCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHH
Confidence 22211 11111 2356889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCeeEEEEEecCcchHHHHHHHHHHHHHHcCCceeeccCCCCcchhhhH
Q 008855 392 EKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSL 471 (551)
Q Consensus 392 ~~Ei~~~~~~L~~~~~~~g~~~v~~E~~~~~~~H~HihvVPvp~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~l 471 (551)
++||.+|+.+|+.||+++|..+|+||+.+.++.|+|+|+||||+.....++..|..++++++++|++.+... .+
T Consensus 375 ~~Ei~kykaal~~myk~~g~~~vvfE~~~~rs~Hlq~Qvipvpks~s~~ik~~F~~~A~eag~ef~t~~~~~------s~ 448 (528)
T KOG2476|consen 375 TQEINKYKAALRKMYKKQGKDAVVFERQSYRSVHLQLQVIPVPKSSSRQIKSSFETAAEEAGLEFETYDSHS------SI 448 (528)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeecccceeeEEEEEeccchhhhhhhHHHHHHHHHcCceEEecCcch------hh
Confidence 999999999999999999999999996688999999999999999999999999999999999999876543 25
Q ss_pred hhhccCCCCeEEEEeCCCceEEEEecCCCccCCccHHHHHHHhcCCCccccccccCCChHHHHHHHHHHHhcCccCCCCC
Q 008855 472 RAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ 551 (551)
Q Consensus 472 ~~~i~~~~~Yf~v~~~~~~~~~~~i~~~~rf~~qFgReVla~lL~lp~r~~Wr~c~~~~eeE~~~~~~Fk~~f~~fD~~~ 551 (551)
....+.+.+||+||+|+|+.|+|++..+++||+||||||||+|||||+|+|||+|.+++|||++++++||++|++||||+
T Consensus 449 ~~~~n~~l~yF~vELPdg~~L~hr~~k~e~FplqFGReVlAslLn~pdrvdWr~C~~tkeeE~~~ae~Fkk~F~pyDft~ 528 (528)
T KOG2476|consen 449 KNQSNNGLPYFVVELPDGSILIHRLMKNETFPLQFGREVLASLLNLPDRVDWRTCLQTKEEEVALAEKFKKAFKPYDFTL 528 (528)
T ss_pred hhhhccCCceEEEECCCCCeehhhhhccCccchhhhHHHHHHHcCCcccccHHHhhhhhHHHHHHHHHHHHhccCCCCCC
Confidence 66677788999999999999999999999999999999999999999999999999999999999999999999999995
No 2
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.6e-48 Score=401.89 Aligned_cols=217 Identities=24% Similarity=0.483 Sum_probs=198.0
Q ss_pred CCCCCcccCCCCCCCcceEEEECCEEEEEecCC-CCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 008855 334 RSKECWFCLSSPSVESHLIVSVGEYYYCALPKG-PLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKE 412 (551)
Q Consensus 334 ~~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kg-Pl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~~ 412 (551)
..++|.||+.++..++|+|||+|..+||+||.. +|..|||+|||.+|.++..+||+++|+||++|+++|+.||++.+.+
T Consensus 405 ~lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~d 484 (628)
T KOG2477|consen 405 VLDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNLD 484 (628)
T ss_pred HhhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999999999999985 6999999999999999999999999999999999999999999999
Q ss_pred eEEEEecC--CCCCeeEEEEEecCcchHHHHHHHHHHHHHHcCCceeeccC-CCCcchhhhHhhhccCCCCeEEEEeCCC
Q 008855 413 AVFFEWLS--KRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKS-SKSSDGRRSLRAQFDRNCSFFYVELPEG 489 (551)
Q Consensus 413 ~v~~E~~~--~~~~H~HihvVPvp~~~~~~~~~~F~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~~Yf~v~~~~~ 489 (551)
|||+|.+. ++.+|+-|||||||.+.++.++.||++|+.+++.||+++.. ...+....+||+.||+++|||+|||+.+
T Consensus 485 viFyE~a~~l~rrpH~~IeCIPvpqeig~map~YFKkAI~esE~Ews~~~nkkliets~k~lR~~IpKglpYfhV~Fgld 564 (628)
T KOG2477|consen 485 VIFYENAPSLQRRPHTAIECIPVPQEIGSMAPAYFKKAISESEEEWSHRKNKKLIETSKKALRKMIPKGLPYFHVWFGLD 564 (628)
T ss_pred eEEEeccCccccCCceeEEEeechHHhhhhhhHHHHHHHhhhHHHHHhhhHHHHHHhhHHHHHHhcccCCCeEEEEEecc
Confidence 99999332 34689999999999999999999999999999999975443 1223345789999999999999999999
Q ss_pred ceEEEEecCCCccCCccHHHHHHHhcCCCccccccccCCChHHHHHHHHHHHhcCccCCCCC
Q 008855 490 TVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ 551 (551)
Q Consensus 490 ~~~~~~i~~~~rf~~qFgReVla~lL~lp~r~~Wr~c~~~~eeE~~~~~~Fk~~f~~fD~~~ 551 (551)
+||+|||+++..||.||||+|||+||+||+. .||+-....+.....|+.|++.|++|||||
T Consensus 565 ~GfaHVIEded~fpsnfa~eViagMLeLpp~-~wRrr~~~~~kqk~rv~~Fa~~wekfDwTK 625 (628)
T KOG2477|consen 565 GGFAHVIEDEDGFPSNFAREVIAGMLELPPE-VWRRRGSWTGKQKPRVDMFASRWEKFDWTK 625 (628)
T ss_pred CceeeeecccccCcchHHHHHHHHHhhCCHH-HHhhcchhhcCcchHHHHHHHhcccccccc
Confidence 9999999999999999999999999999986 499876666777889999999999999997
No 3
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=100.00 E-value=5.8e-41 Score=337.34 Aligned_cols=179 Identities=22% Similarity=0.406 Sum_probs=151.1
Q ss_pred CccCCcccCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEECCeEEEEEccccCCCCCc-
Q 008855 2 NYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQ- 80 (551)
Q Consensus 2 ~y~~G~~~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~~~~~- 80 (551)
.||+|++++||||+|||||||++ ++|.+|+ +||||||||||||.+||+++.|+|||+||||++..++.
T Consensus 66 ~YYsge~~APVlTIFIGGNHEAs-nyL~eLp----------yGGwVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~k 134 (456)
T KOG2863|consen 66 KYYSGEIKAPVLTIFIGGNHEAS-NYLQELP----------YGGWVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRK 134 (456)
T ss_pred HHhCCcccCceeEEEecCchHHH-HHHHhcc----------cCceeccceEEeeecceEEECCEEEeeccchhhhhhccc
Confidence 59999999999999999999995 7888886 89999999999999999999999999999999877753
Q ss_pred ----CCCCCHHHHHHHHH--------hhcCCCCccEEEeCCCchhccccccccc-------cccCCCCCCCCCHHHHHHH
Q 008855 81 ----FGTYSQDDVDALRA--------LAEEPGIVDLFLTNEWPSGVTNKAAASD-------MLVGISDSSNTDSTVSELV 141 (551)
Q Consensus 81 ----~~~~~~~dv~~l~~--------~~~~~~~vDIllT~~WP~~I~~~~~~~~-------~~~~~~~~~~Gs~~i~~L~ 141 (551)
.++|+.+.+++++. |.....+||||||||||+||..+++... +.+++..+.+||+++++|+
T Consensus 135 gh~E~ppyn~stiRsiYHvR~~dV~~Lkqlk~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL 214 (456)
T KOG2863|consen 135 GHFEWPPYNNSTIRSIYHVRISDVAKLKQLKHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELL 214 (456)
T ss_pred CCCCCCCccchhhhhhhhhhhhhhHHHHhhcCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHH
Confidence 35677777776663 2345689999999999999999998753 3367777899999999999
Q ss_pred HhcCCCcEEeccCCceeeccccccCCCCceeEEEeccCCCCcccceEEEEecC
Q 008855 142 AEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSP 194 (551)
Q Consensus 142 ~~lkPrYhFa~~~~~fyEr~Py~~~~~~~~TRFi~L~~~g~~~K~kwlyAf~i 194 (551)
.+|||+||||||+|+.|...-. +....++|.|++|+|+.+ .+.++..+++
T Consensus 215 ~~LkP~yWfsAHLH~KFaA~v~-H~~~~~~tkflaldKclp--~~~flqile~ 264 (456)
T KOG2863|consen 215 EDLKPQYWFSAHLHVKFAALVQ-HNKRSHVTKFLALDKCLP--NRNFLQILEI 264 (456)
T ss_pred HHhCcchhhhhhHhhHHhhhhc-ccCcCCCcccccccccCC--CcchhhhccC
Confidence 9999999999999988875432 234689999999999987 3446666655
No 4
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=100.00 E-value=1.8e-38 Score=320.14 Aligned_cols=174 Identities=26% Similarity=0.406 Sum_probs=145.0
Q ss_pred CccCCcccCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEECCeEEEEEccccCCCCCc-
Q 008855 2 NYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQ- 80 (551)
Q Consensus 2 ~y~~G~~~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~~~~~- 80 (551)
+|++|++++|+|||||+||||.+ .++.++. +|+|||+||+|||+++|++++|||||||||+++..++.
T Consensus 64 ~~~~g~~~~p~~t~fi~GNHE~~-~~l~~l~----------~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~ 132 (262)
T cd00844 64 KYYSGEKKAPILTIFIGGNHEAS-NYLWELP----------YGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRK 132 (262)
T ss_pred HHhcCCccCCeeEEEECCCCCCH-HHHHhhc----------CCCeecCcEEEecCCCEEEECCeEEEEeccccccccccc
Confidence 58999999999999999999985 5677664 58999999999999999999999999999998765543
Q ss_pred ----CCCCCHHHHHHHHHh--------hcCCCCccEEEeCCCchhcccccccc-------ccccCCCCCCCCCHHHHHHH
Q 008855 81 ----FGTYSQDDVDALRAL--------AEEPGIVDLFLTNEWPSGVTNKAAAS-------DMLVGISDSSNTDSTVSELV 141 (551)
Q Consensus 81 ----~~~~~~~dv~~l~~~--------~~~~~~vDIllT~~WP~~I~~~~~~~-------~~~~~~~~~~~Gs~~i~~L~ 141 (551)
..+|+++|+++++.. .....+|||||||+||.||..+++.+ .+.+++....+||+.+++|+
T Consensus 133 ~~~~~~~~t~~~~rs~y~~r~~~~~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll 212 (262)
T cd00844 133 GHFERPPYSEDTKRSAYHVRNIEVFKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELL 212 (262)
T ss_pred ccccCCCCCHHHHHHhhhhhHHHHHHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHH
Confidence 458999999876532 22345899999999999999988753 12234455578999999999
Q ss_pred HhcCCCcEEeccCCceee-ccccccC---CCCceeEEEeccCCCCcccceE
Q 008855 142 AEIKPRYHIAGSKGVFYA-REPYSNV---DAVHVTRFLGLAPVGNKEKQKF 188 (551)
Q Consensus 142 ~~lkPrYhFa~~~~~fyE-r~Py~~~---~~~~~TRFi~L~~~g~~~K~kw 188 (551)
+.||||||||||.|++|| ++||+|. +..++|||||||+|.+ ++++
T Consensus 213 ~~lkPryhf~gH~H~~f~~~~~~~~~~~~~~~~~TRFiaL~k~~~--~~~~ 261 (262)
T cd00844 213 KHLKPRYWFSAHLHVKFAALVPHENKSPGNTNKETKFLALDKCLP--GRDF 261 (262)
T ss_pred HHhCCCEEEEecCCcccceecCCcccccCCCCcceEEEEcccccC--CCCC
Confidence 999999999999999888 6699984 3578999999999987 4444
No 5
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=100.00 E-value=9.2e-35 Score=260.11 Aligned_cols=116 Identities=43% Similarity=0.850 Sum_probs=110.4
Q ss_pred ccCCCCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 008855 331 SANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG 410 (551)
Q Consensus 331 ~~~~~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g 410 (551)
..+.+++||||++|+++++|||||+|+++||+||+|||.+||+||||++|++|+.++|+++|+||++|+++|++||+++|
T Consensus 6 ~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~ 85 (121)
T PF04677_consen 6 QNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQG 85 (121)
T ss_pred cCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCeeEEEEEecCcchHHHHHHHHH
Q 008855 411 KEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFN 446 (551)
Q Consensus 411 ~~~v~~E~~~~~~~H~HihvVPvp~~~~~~~~~~F~ 446 (551)
.++||||....+..|+||||||||++.++.++.||+
T Consensus 86 ~~vvf~E~~~~~~~H~~iq~vPvp~~~~~~~~~yFk 121 (121)
T PF04677_consen 86 KDVVFFERVRKRNPHTHIQCVPVPKELGEKAPSYFK 121 (121)
T ss_pred CCEEEEEEeCCCCcEEEEEEEEcCHHHHHhhhhhcC
Confidence 999999944666899999999999999999999996
No 6
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=99.95 E-value=1.3e-28 Score=228.66 Aligned_cols=77 Identities=48% Similarity=0.819 Sum_probs=66.0
Q ss_pred CccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCceeeccccccCC-----CCceeEEE
Q 008855 101 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD-----AVHVTRFL 175 (551)
Q Consensus 101 ~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fyEr~Py~~~~-----~~~~TRFi 175 (551)
++||||||+||.||.++++... +......||+.|++|+++||||||||||.++||||+||+|+. ..++||||
T Consensus 69 ~~DILlTh~wP~gi~~~~~~~~---~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~Pf~~~~~~~~~~~~~TRFi 145 (150)
T cd07380 69 GVDILLTSEWPKGISKLSKVPF---EETLLICGSDLIAELAKKLKPRYHFAGLEGVFYEREPYRNDSVLEEKAEHVTRFI 145 (150)
T ss_pred CCCEEECCCCchhhhhhCCCcc---cccccCCCCHHHHHHHHHcCCCeEeecCCCceEeecCccCCCccccccCcceeEE
Confidence 4899999999999987765431 112246899999999999999999999999999999999986 37899999
Q ss_pred eccCC
Q 008855 176 GLAPV 180 (551)
Q Consensus 176 ~L~~~ 180 (551)
+||++
T Consensus 146 ~La~~ 150 (150)
T cd07380 146 GLAPV 150 (150)
T ss_pred eccCC
Confidence 99985
No 7
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.
Probab=99.95 E-value=2.6e-28 Score=211.09 Aligned_cols=96 Identities=46% Similarity=0.831 Sum_probs=87.1
Q ss_pred ceeec--cCCCCcchhhhHhhhccCCCCeEEEEeCCCceEEEEecCCCccCCccHHHHHHHhcCCCccccccccCCChHH
Q 008855 455 KFLAT--KSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEE 532 (551)
Q Consensus 455 ~~~~~--~~~~~~~~~~~l~~~i~~~~~Yf~v~~~~~~~~~~~i~~~~rf~~qFgReVla~lL~lp~r~~Wr~c~~~~ee 532 (551)
+|++| ++.....++.++++++++++|||+|+++.+++|+|+|+++++||+||||+|||+||++|+|++||+|.+++++
T Consensus 1 ews~n~~kk~~~~~~~~~~~~~~~~~~~Yf~V~~~~~~~~~~vie~~~~f~~qFgReVla~lL~lp~r~~Wr~c~~~~~e 80 (98)
T PF04676_consen 1 EWSQNEKKKLIDTSKKKGLRRSIPKGFPYFHVEFPDGKGYAHVIEDEERFPLQFGREVLAGLLNLPERADWRKCQQSKEE 80 (98)
T ss_pred CccccccCCcccccChHHHHHhcCCCCCEEEEEEeCCCEEEEECCcCCccCcchHHHHHHHHhCCCchHHHHhcccCHHH
Confidence 57777 4433322357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCC
Q 008855 533 ETKMVEDFKKRFEAFDPN 550 (551)
Q Consensus 533 E~~~~~~Fk~~f~~fD~~ 550 (551)
|+++|++||++|++||||
T Consensus 81 e~~~~~~Fk~~f~~fD~T 98 (98)
T PF04676_consen 81 ETQDAEAFKKAFKPFDWT 98 (98)
T ss_pred HHHHHHHHHHHccCcCCC
Confidence 999999999999999998
No 8
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.74 E-value=7.8e-18 Score=150.79 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=81.8
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----c
Q 008855 335 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-----Q 409 (551)
Q Consensus 335 ~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~-----~ 409 (551)
.++|+||.+..+.....+|++++.++++++..|+++||+||||++|++++.+++++++.++..+.+.++++.+. .
T Consensus 2 ~~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~ 81 (119)
T PRK10687 2 AEETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED 81 (119)
T ss_pred CCCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35799999865544445789999999999999999999999999999999999999999999888877766542 3
Q ss_pred CCceEEEE--ecCCCCCeeEEEEEecCc
Q 008855 410 GKEAVFFE--WLSKRGTHANLQAVPIPT 435 (551)
Q Consensus 410 g~~~v~~E--~~~~~~~H~HihvVPvp~ 435 (551)
|++++++. .+++.+.|+|+|+||...
T Consensus 82 g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 82 GYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred ceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 56666655 234447999999999743
No 9
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.69 E-value=1.2e-16 Score=146.80 Aligned_cols=100 Identities=22% Similarity=0.195 Sum_probs=82.3
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCC
Q 008855 336 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGK 411 (551)
Q Consensus 336 ~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~----~~g~ 411 (551)
..|+||.+-.......+|+++++++++++..|.++||+||||++|+.++.+++++++.+|+...+.+.+.++ +.|+
T Consensus 1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ 80 (138)
T COG0537 1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGY 80 (138)
T ss_pred CCceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 369999865443445688999999999999999999999999999999999999999999988776666554 4677
Q ss_pred ceEEEE--ecCCCCCeeEEEEEecCc
Q 008855 412 EAVFFE--WLSKRGTHANLQAVPIPT 435 (551)
Q Consensus 412 ~~v~~E--~~~~~~~H~HihvVPvp~ 435 (551)
+++.+. .+++.++|+|+||||+..
T Consensus 81 ni~~N~g~~agq~V~HlH~HvIPr~~ 106 (138)
T COG0537 81 NIGINNGKAAGQEVFHLHIHIIPRYK 106 (138)
T ss_pred EEEEecCcccCcCcceEEEEEcCCcC
Confidence 777665 334347999999999754
No 10
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.63 E-value=1.3e-15 Score=137.62 Aligned_cols=99 Identities=23% Similarity=0.267 Sum_probs=79.7
Q ss_pred CcccCCCCC-CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCc
Q 008855 338 CWFCLSSPS-VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKE 412 (551)
Q Consensus 338 C~FC~~~~~-~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~----~g~~ 412 (551)
|+||.+... .+...||++++.++++++..|..+||+||||++|+.++.+|+++++.+|..+.+.+.+.++. .+++
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 999987543 32256899999999999999999999999999999999999999999999998877666554 4555
Q ss_pred eEEEE--ecCCCCCeeEEEEEecCcc
Q 008855 413 AVFFE--WLSKRGTHANLQAVPIPTS 436 (551)
Q Consensus 413 ~v~~E--~~~~~~~H~HihvVPvp~~ 436 (551)
+++.. ..++...|+|+||||+...
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~~ 106 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWNG 106 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcCC
Confidence 55444 1233468999999998543
No 11
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.63 E-value=1.7e-15 Score=131.42 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=78.1
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCc
Q 008855 337 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKE 412 (551)
Q Consensus 337 ~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~----~g~~ 412 (551)
+|.||.+..+.....||++++++++++|..|..+||+||+|++|+.++.+|+++++.++..+.+.+.+.+.. .|++
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 599998754322334899999999999999999999999999999999999999999999887776665553 4666
Q ss_pred eEEEE--ecCCCCCeeEEEEEec
Q 008855 413 AVFFE--WLSKRGTHANLQAVPI 433 (551)
Q Consensus 413 ~v~~E--~~~~~~~H~HihvVPv 433 (551)
+++++ ...+...|+|+|+||+
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 66665 1223468999999995
No 12
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.58 E-value=9e-15 Score=127.40 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=73.2
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----cCC
Q 008855 337 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-----QGK 411 (551)
Q Consensus 337 ~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~-----~g~ 411 (551)
+|+||.+..+.....||++++.+++++|.+|.++||+||||++|++++.+|+++++.++..+.+.++++.+. .|+
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY 80 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 599998754433355889999999999999999999999999999999999887777777666655444333 355
Q ss_pred ceEEEE-e-cCCCCCeeEEEEEe
Q 008855 412 EAVFFE-W-LSKRGTHANLQAVP 432 (551)
Q Consensus 412 ~~v~~E-~-~~~~~~H~HihvVP 432 (551)
++++.. . +.+...|+|+|+|+
T Consensus 81 n~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 81 RLVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred EEEEeCCCCCCCceeEEEEEEeC
Confidence 555544 2 22335899999997
No 13
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.52 E-value=5.3e-14 Score=121.44 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=70.6
Q ss_pred cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEE--ecCCC
Q 008855 349 SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE--WLSKR 422 (551)
Q Consensus 349 ~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~----~g~~~v~~E--~~~~~ 422 (551)
...||++++.++++++..|.++||+||||++|+.++.+|+++++.+|+...+.+.+.++. .|++++... ..++.
T Consensus 5 ~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~ 84 (98)
T PF01230_consen 5 PARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQS 84 (98)
T ss_dssp HCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSS
T ss_pred CeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCc
Confidence 345889999999999999999999999999999999999999999999988888777664 455555555 23444
Q ss_pred CCeeEEEEEecC
Q 008855 423 GTHANLQAVPIP 434 (551)
Q Consensus 423 ~~H~HihvVPvp 434 (551)
++|+|+||||+.
T Consensus 85 v~HlH~HviPR~ 96 (98)
T PF01230_consen 85 VPHLHFHVIPRY 96 (98)
T ss_dssp SSS-EEEEEEES
T ss_pred cCEEEEEEeccc
Confidence 799999999974
No 14
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.46 E-value=3.1e-13 Score=117.87 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=73.4
Q ss_pred CCcccCCCCC-C-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh------
Q 008855 337 ECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN------ 408 (551)
Q Consensus 337 ~C~FC~~~~~-~-~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~------ 408 (551)
.|+||.+..+ . ....||++++.+++++|..|.++||+||||++|+.++.+++++++.++..+.+.+.+.+..
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4999987543 2 2456889999999999999999999999999999999999999999999998877664433
Q ss_pred cCCceEEEEecCCCCCeeEEEEE
Q 008855 409 QGKEAVFFEWLSKRGTHANLQAV 431 (551)
Q Consensus 409 ~g~~~v~~E~~~~~~~H~HihvV 431 (551)
.|+++++.....+...|+|+|||
T Consensus 81 ~~~n~g~h~~p~~~v~H~H~Hvi 103 (104)
T cd01278 81 SEFRFGFHAPPFTSVSHLHLHVI 103 (104)
T ss_pred cCeEEEeCCCCCcCeeeEEEEee
Confidence 23333222211224579999997
No 15
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.46 E-value=2.4e-13 Score=117.75 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=81.8
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccc---cCCCCCCCHHHHHHHHHHHHHHHHHHH-hcC
Q 008855 335 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEH---VPNTISTSPECEKELGRFQNSLMMYYK-NQG 410 (551)
Q Consensus 335 ~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H---~~s~~~l~~e~~~Ei~~~~~~L~~~~~-~~g 410 (551)
..+|+||.+-.+.-...||++++.|+++.+..|..+||.||||+.| .+...+.++++...++-..+.+++.+. ..|
T Consensus 15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~g 94 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDG 94 (127)
T ss_pred CCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccc
Confidence 5789999976543334588999999999999999999999999999 555667899999999999999998877 467
Q ss_pred CceEEEE-ec-CCCCCeeEEEEEe
Q 008855 411 KEAVFFE-WL-SKRGTHANLQAVP 432 (551)
Q Consensus 411 ~~~v~~E-~~-~~~~~H~HihvVP 432 (551)
|.++.++ .. .+.+.|+|+||+|
T Consensus 95 Yrvv~NnG~~g~QsV~HvH~Hvlg 118 (127)
T KOG3275|consen 95 YRVVQNNGKDGHQSVYHVHLHVLG 118 (127)
T ss_pred eeEEEcCCcccceEEEEEEEEEeC
Confidence 9998888 32 3346899999999
No 16
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.41 E-value=8.1e-13 Score=110.59 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=65.6
Q ss_pred EEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEE-e-cCCCCCee
Q 008855 353 VSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE-W-LSKRGTHA 426 (551)
Q Consensus 353 vs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~----~g~~~v~~E-~-~~~~~~H~ 426 (551)
|++++++++++|..|..+||+||||++|+.++.+++++++.++..+.+.+.+.+++ .+++++++. . .++...|+
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~ 80 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV 80 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence 47899999999999999999999999999999999999999999998888777653 233443333 2 23336899
Q ss_pred EEEEEe
Q 008855 427 NLQAVP 432 (551)
Q Consensus 427 HihvVP 432 (551)
|+|+||
T Consensus 81 H~hiiP 86 (86)
T cd00468 81 HLHVLP 86 (86)
T ss_pred EEEeCC
Confidence 999998
No 17
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.18 E-value=5.6e-11 Score=124.99 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCCCcccCCCC-CC-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-c--
Q 008855 335 SKECWFCLSSP-SV-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q-- 409 (551)
Q Consensus 335 ~~~C~FC~~~~-~~-~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~-~-- 409 (551)
...|+||.+.. +. ....||++++++++++|..|..+||+||||++|+.++.+++++++.+|..+.+.+.+.+.+ .
T Consensus 193 ~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~ 272 (347)
T TIGR00209 193 HKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFET 272 (347)
T ss_pred cCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35899998643 22 2456899999999999999999999999999999999999999999999998887776653 2
Q ss_pred --CCceEEEE-ecCCC---CCeeEEEEEec
Q 008855 410 --GKEAVFFE-WLSKR---GTHANLQAVPI 433 (551)
Q Consensus 410 --g~~~v~~E-~~~~~---~~H~HihvVPv 433 (551)
++++++.. -.++. ..|+|+|++|+
T Consensus 273 ~~pYn~~~h~~p~~~~~~~~~H~HihiiPr 302 (347)
T TIGR00209 273 SFPYSMGWHGAPFNGEENQHWQLHAHFYPP 302 (347)
T ss_pred CCCcceeEEecccCCCCCcEEEEEEEEeCC
Confidence 46666655 22222 25899999997
No 18
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.17 E-value=6.2e-11 Score=124.64 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=78.9
Q ss_pred CCCCcccCCCC-CCC-cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----
Q 008855 335 SKECWFCLSSP-SVE-SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN---- 408 (551)
Q Consensus 335 ~~~C~FC~~~~-~~~-~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~---- 408 (551)
...|.||.+.. +.+ ...||++++++++++|..|..+||+||||++|+.++.+++++++.+|..+.+.+.+.+..
T Consensus 193 ~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~ 272 (346)
T PRK11720 193 HGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQC 272 (346)
T ss_pred cCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36899998653 332 246899999999999999999999999999999999999999999999888877766543
Q ss_pred -cCCceEEEE-ecCC---CCCeeEEEEEec
Q 008855 409 -QGKEAVFFE-WLSK---RGTHANLQAVPI 433 (551)
Q Consensus 409 -~g~~~v~~E-~~~~---~~~H~HihvVPv 433 (551)
.++++++.. -.+. ...|+|+|++|+
T Consensus 273 ~~pyn~~~h~~p~~~~~~~~~H~HihiiPr 302 (346)
T PRK11720 273 SFPYSMGWHGAPFNGEENDHWQLHAHFYPP 302 (346)
T ss_pred CCCCceeEEecccCCCCCeeEEEEEEEeCC
Confidence 235666655 1112 247999999997
No 19
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.01 E-value=2.3e-09 Score=95.73 Aligned_cols=86 Identities=14% Similarity=0.198 Sum_probs=70.4
Q ss_pred CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-CC-c-eEEEE---ecCC
Q 008855 348 ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-GK-E-AVFFE---WLSK 421 (551)
Q Consensus 348 ~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~-g~-~-~v~~E---~~~~ 421 (551)
...-|++...++|++.+..|+.|||+||+|++=++.+.+|+.++..+|..-.+.+.++++.. +. . .|.+. -+++
T Consensus 15 ~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQ 94 (150)
T KOG3379|consen 15 PPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQ 94 (150)
T ss_pred CcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCc
Confidence 33458899999999999999999999999999999999999999999998888888888763 22 1 22222 2445
Q ss_pred CCCeeEEEEEec
Q 008855 422 RGTHANLQAVPI 433 (551)
Q Consensus 422 ~~~H~HihvVPv 433 (551)
.++|+|+|++|+
T Consensus 95 TVpHvHvHIlPR 106 (150)
T KOG3379|consen 95 TVPHVHVHILPR 106 (150)
T ss_pred ccceeEEEEccc
Confidence 579999999996
No 20
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.00 E-value=7.3e-10 Score=116.14 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=78.5
Q ss_pred CCCCcccCCCC-CC-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----
Q 008855 335 SKECWFCLSSP-SV-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN---- 408 (551)
Q Consensus 335 ~~~C~FC~~~~-~~-~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~---- 408 (551)
...|.||.+.. +. ....||++++++.+++|-.|..+||+||||++|+.++.+|+++++.+|..+.+.+...+.+
T Consensus 183 ~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~ 262 (329)
T cd00608 183 HGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNC 262 (329)
T ss_pred cCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36899998643 22 2356899999999999999999999999999999999999999999999988877765543
Q ss_pred -cCCceEEEE-ecCC-----CCCeeEEEEEecCc
Q 008855 409 -QGKEAVFFE-WLSK-----RGTHANLQAVPIPT 435 (551)
Q Consensus 409 -~g~~~v~~E-~~~~-----~~~H~HihvVPvp~ 435 (551)
.++++++.. -.+. ...|+|+|++|+-.
T Consensus 263 ~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 263 SFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred CCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 345555544 1221 24699999999743
No 21
>PLN02643 ADP-glucose phosphorylase
Probab=99.00 E-value=1.2e-09 Score=114.56 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=76.3
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cC
Q 008855 335 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QG 410 (551)
Q Consensus 335 ~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~----~g 410 (551)
...|.||.+... +. ||++++++.+++|..|..+||+||||++|+.++.+++++++.+|....+.+.+.+.. .+
T Consensus 197 ~g~Clfcdii~~-E~--iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~p 273 (336)
T PLN02643 197 TGKCSLCEVVKK-DL--LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPP 273 (336)
T ss_pred hCCCcHHHHHhC-cc--EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 358999987543 22 899999999999999999999999999999999999999999999988866655542 35
Q ss_pred CceEEEE-ecC--C-CC--CeeEEEEEecC
Q 008855 411 KEAVFFE-WLS--K-RG--THANLQAVPIP 434 (551)
Q Consensus 411 ~~~v~~E-~~~--~-~~--~H~HihvVPvp 434 (551)
+++++.. -.. . .. .|+|+|++|+-
T Consensus 274 yN~~~~~~P~~~~~~~~~~~H~hihi~PRl 303 (336)
T PLN02643 274 YNYMIQTSPLGVEESNLPYTHWFLQIVPQL 303 (336)
T ss_pred ceeeeecCCCccccCcccceEEEEEEecCc
Confidence 6776666 111 1 12 47777999963
No 22
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.92 E-value=1.6e-09 Score=96.76 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=68.6
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEecc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC----C
Q 008855 337 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVE-HVPNTISTSPECEKELGRFQNSLMMYYKNQG----K 411 (551)
Q Consensus 337 ~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~-H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g----~ 411 (551)
+|+||.+....+..-|+++++.+.++-|..|..+-|+||||++ |+.|+.+|+.+-..-|.++.....++++..+ .
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4999998755445568899999999999999999999999999 9999999988776666666666666555432 1
Q ss_pred --c-eEEEEecCCCCCeeEEEEEecCcc
Q 008855 412 --E-AVFFEWLSKRGTHANLQAVPIPTS 436 (551)
Q Consensus 412 --~-~v~~E~~~~~~~H~HihvVPvp~~ 436 (551)
. .++|- ......|+|+|||..+..
T Consensus 81 ~~~~~~gfH-~~PS~~HLHlHvi~~~~~ 107 (116)
T PF11969_consen 81 SDDIRLGFH-YPPSVYHLHLHVISPDFD 107 (116)
T ss_dssp GGGEEEEEE-SS-SSSS-EEEEEETTS-
T ss_pred hhhhccccc-CCCCcceEEEEEccCCCc
Confidence 1 23344 333568999999997643
No 23
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.72 E-value=2.5e-07 Score=87.81 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=85.2
Q ss_pred ccCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEECCeEEEEEccccCCCCCcCCCCCHH
Q 008855 8 SEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQD 87 (551)
Q Consensus 8 ~~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~~~~~~~~~~~~ 87 (551)
...++|+|++.|||.... .... ..+++..|.. .++.+.|++|.+++|...........++++
T Consensus 49 ~~~~~p~~~v~GNHD~~~-~~~~----------------~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 110 (188)
T cd07392 49 LAIGVPVLAVPGNCDTPE-ILGL----------------LTSAGLNLHG-KVVEVGGYTFVGIGGSNPTPFNTPIELSEE 110 (188)
T ss_pred HhcCCCEEEEcCCCCCHH-HHHh----------------hhcCcEecCC-CEEEECCEEEEEeCCCCCCCCCCccccCHH
Confidence 356889999999999742 2221 2234444544 566788999999988643222223567888
Q ss_pred HHHHHHHhhcCCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCcee
Q 008855 88 DVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 158 (551)
Q Consensus 88 dv~~l~~~~~~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fy 158 (551)
+++.+..+.......|||+||.||.+... +. .... ...|+..+.+|++..+|+|+|+||.|.-+
T Consensus 111 ~l~~~~~l~~~~~~~~ilv~H~pp~~~~~--d~--~~~~---~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 111 EIVSDGRLNNLLAKNLILVTHAPPYGTAV--DR--VSGG---FHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred HHHHhhhhhccCCCCeEEEECCCCcCCcc--cc--cCCC---CccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 88876333334567899999999987411 11 1101 13699999999999999999999976654
No 24
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=98.20 E-value=2.3e-06 Score=76.89 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=63.7
Q ss_pred CCCCcccCCCCC--CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 008855 335 SKECWFCLSSPS--VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKE 412 (551)
Q Consensus 335 ~~~C~FC~~~~~--~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~~ 412 (551)
.+.|.||.+... -.+.+..-+.+++.++-++.|-..-|-|+||++|+.+..+|..+...=+++..+.-+..|.....
T Consensus 30 ~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~- 108 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNF- 108 (166)
T ss_pred CCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc-
Confidence 457999987631 23444444555666666799999999999999999999999766544444333333333332211
Q ss_pred eEEEE-ecCCC------CCeeEEEEEecCcchH
Q 008855 413 AVFFE-WLSKR------GTHANLQAVPIPTSKA 438 (551)
Q Consensus 413 ~v~~E-~~~~~------~~H~HihvVPvp~~~~ 438 (551)
+.+-+ +++.. +.|+|+|+|--+.+.+
T Consensus 109 td~~~~r~GFHLPPf~SV~HLHlH~I~P~~DMg 141 (166)
T KOG4359|consen 109 TDFTNVRMGFHLPPFCSVSHLHLHVIAPVDDMG 141 (166)
T ss_pred CCchheeEeccCCCcceeeeeeEeeecchHHhc
Confidence 11111 12222 4799999995444443
No 25
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.13 E-value=3.3e-05 Score=76.81 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=93.4
Q ss_pred cCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEECC-eEEEEEccccCCCCCcCCCCCHH
Q 008855 9 EIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQQFGTYSQD 87 (551)
Q Consensus 9 ~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~G-LrIa~lsG~~~~~~~~~~~~~~~ 87 (551)
..++|+|++.|||..+ +...+... ....++-|++..|.. +++++.| ++|++++|..... ..++++
T Consensus 60 ~l~~pv~~V~GNhD~~--v~~~l~~~-------~~~~~~~p~~~~lh~-~~~~~~g~~~~~GlGGs~~~~----~e~sE~ 125 (224)
T cd07388 60 EAHLPTFYVPGPQDAP--LWEYLREA-------YNAELVHPEIRNVHE-TFAFWRGPYLVAGVGGEIADE----GEPEEH 125 (224)
T ss_pred hcCCceEEEcCCCChH--HHHHHHHH-------hcccccCccceecCC-CeEEecCCeEEEEecCCcCCC----CCcCHH
Confidence 4568999999999874 33333210 011244466666766 5667755 9999999985432 345677
Q ss_pred HH--------H-HHHHhhcCCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCcee
Q 008855 88 DV--------D-ALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 158 (551)
Q Consensus 88 dv--------~-~l~~~~~~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fy 158 (551)
++ + .|..+.......||||||.=|.++.- .-.||..+.++++..+|+++++||-|.=.
T Consensus 126 e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~-------------~h~GS~alr~~I~~~~P~l~i~GHih~~~ 192 (224)
T cd07388 126 EALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGL-------------NEQGSHEVAHLIKTHNPLVVLVGGKGQKH 192 (224)
T ss_pred HHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCC-------------CccCHHHHHHHHHHhCCCEEEEcCCceeE
Confidence 62 1 12223333467999999999999820 13799999999999999999999865323
Q ss_pred eccccccCCCCceeEEEeccCCCC
Q 008855 159 AREPYSNVDAVHVTRFLGLAPVGN 182 (551)
Q Consensus 159 Er~Py~~~~~~~~TRFi~L~~~g~ 182 (551)
|+ ..-|..++-+++..
T Consensus 193 ~~--------~g~t~vvNpg~~~~ 208 (224)
T cd07388 193 EL--------LGASWVVVPGDLSE 208 (224)
T ss_pred EE--------eCCEEEECCCcccC
Confidence 32 33588998888643
No 26
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.83 E-value=0.0027 Score=66.39 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=74.9
Q ss_pred CCCCcccCCCC--CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc---
Q 008855 335 SKECWFCLSSP--SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ--- 409 (551)
Q Consensus 335 ~~~C~FC~~~~--~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~--- 409 (551)
...|.||.... ......||.++++..++.|-.+.-+-+++|+|++|+..+.++++++..+|-...+.+...|...
T Consensus 184 ~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~ 263 (338)
T COG1085 184 NGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGN 263 (338)
T ss_pred cCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCC
Confidence 46799998643 2234578888888888888888889999999999999999999999999999888888776641
Q ss_pred --CCceEEEE-ecC--CCCCeeEEEEEe
Q 008855 410 --GKEAVFFE-WLS--KRGTHANLQAVP 432 (551)
Q Consensus 410 --g~~~v~~E-~~~--~~~~H~HihvVP 432 (551)
.+.+.|.. ..+ ..-.|+|+|++|
T Consensus 264 ~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 264 SFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred CCceeeeeecCCCCcccccceEEEEEcc
Confidence 23444444 112 113599999999
No 27
>PHA03008 hypothetical protein; Provisional
Probab=96.46 E-value=0.0081 Score=57.58 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=58.2
Q ss_pred ccCeEEecCCceeE-E--CCeEEEEEccccC----CCC--C--cCCCCCHHHHHHHHHhhcCCCCccEEEeCCCchhccc
Q 008855 48 TDNLFWLKGSGNFT-L--HGLSVAYLSGRQS----SEG--Q--QFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTN 116 (551)
Q Consensus 48 ~~Nl~yLg~~gv~~-~--~GLrIa~lsG~~~----~~~--~--~~~~~~~~dv~~l~~~~~~~~~vDIllT~~WP~~I~~ 116 (551)
.-|++||-.++|.- . .|+||=+-+-+-. ... + ....|..+.-+.+....... .+|||+||--|.|+..
T Consensus 98 ~gnIIYLeDs~VtI~f~~rgIKIYGSP~sP~~~F~~sai~k~~~~wAf~~~~d~~i~wwn~IP-~tDILITHgPP~GhLD 176 (234)
T PHA03008 98 ELDIIILRDDLIEFDFFDDIIKIYGQSHIEDKKFKNSHIHKALEGIAHIKKNDDEINYRNHIP-KCDILITASPPFAILD 176 (234)
T ss_pred CCCEEEEeCCcEEEEecCCceEEECCCCCcchhcccccccccccccccccCccccchhhccCC-CCCEEEeCCCCccccc
Confidence 46899999998874 3 5788765332211 000 0 00112211111111111122 4999999999999942
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCce
Q 008855 117 KAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 157 (551)
Q Consensus 117 ~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~f 157 (551)
..+|+..+.+-+..+|||||.-||+..|
T Consensus 177 -------------~~vGC~~Ll~~I~rVKPKyHVFGh~~~~ 204 (234)
T PHA03008 177 -------------DDLACGDLFSKVIKIKPKFHIFNGLTQF 204 (234)
T ss_pred -------------cccCcHHHHHHHHHhCCcEEEeCCcccc
Confidence 1379998888888999999999986433
No 28
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=96.36 E-value=0.0044 Score=58.89 Aligned_cols=73 Identities=23% Similarity=0.369 Sum_probs=47.0
Q ss_pred CCCcccCCC--CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 008855 336 KECWFCLSS--PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN 408 (551)
Q Consensus 336 ~~C~FC~~~--~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~ 408 (551)
..|.||..- .......||+++++..++.|-..--|--++|+|++|..++.++++++..++-...+.+...+..
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~ 87 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDN 87 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcc
Confidence 479999753 1223455888999988888877777889999999999999999999888888777766666553
No 29
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=95.95 E-value=0.056 Score=53.58 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=74.2
Q ss_pred cCCceEEEecCCCCChHHH-HHHhhcccccCCCccCCceeccCeEEecCCceeEECC-eEEEEEccccCCCCCc-----C
Q 008855 9 EIPIPTYFIGDYGVGAAKV-LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQQ-----F 81 (551)
Q Consensus 9 ~~PipTyfigg~~~~~~~~-~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~G-LrIa~lsG~~~~~~~~-----~ 81 (551)
.+.+||++|+||+-.|... +.++. +..-+-||++-+-+ +++...| +-|++++|.....+.. .
T Consensus 87 ~~~~p~~~vPG~~Dap~~~~lr~a~----------~~e~v~p~~~~vH~-sf~~~~g~y~v~G~GGeI~~~~~~~~~~Lr 155 (255)
T PF14582_consen 87 ELGVPVFVVPGNMDAPERFFLREAY----------NAEIVTPHIHNVHE-SFFFWKGEYLVAGMGGEITDDQREEEFKLR 155 (255)
T ss_dssp CC-SEEEEE--TTS-SHHHHHHHHH----------HCCCC-TTEEE-CT-CEEEETTTEEEEEE-SEEESSS-BCSSS-E
T ss_pred hcCCcEEEecCCCCchHHHHHHHHh----------ccceeccceeeeee-eecccCCcEEEEecCccccCCCcccccccc
Confidence 5789999999999998654 34333 23467899988877 7777887 9999999964332221 1
Q ss_pred CCCCHHHHHHHHHhhcCCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCc
Q 008855 82 GTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV 156 (551)
Q Consensus 82 ~~~~~~dv~~l~~~~~~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~ 156 (551)
.++-+.+-. |+.+......-=|||.|.=|. +. + + ..-.||..+.+|.+..+|+--++||-|.
T Consensus 156 YP~weaey~-lk~l~elk~~r~IlLfhtpPd-~~---k------g--~~h~GS~~V~dlIk~~~P~ivl~Ghihe 217 (255)
T PF14582_consen 156 YPAWEAEYS-LKFLRELKDYRKILLFHTPPD-LH---K------G--LIHVGSAAVRDLIKTYNPDIVLCGHIHE 217 (255)
T ss_dssp EEHHHHHHH-HGGGGGCTSSEEEEEESS-BT-BC---T------C--TBTTSBHHHHHHHHHH--SEEEE-SSS-
T ss_pred chHHHHHHH-HHHHHhcccccEEEEEecCCc-cC---C------C--cccccHHHHHHHHHhcCCcEEEeccccc
Confidence 122222222 444444445577999999991 11 1 1 1247999999999999999999998543
No 30
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=95.81 E-value=0.33 Score=48.13 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=93.3
Q ss_pred ccCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEECCeEEEEEccccCCCCCcCCCCCHH
Q 008855 8 SEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQD 87 (551)
Q Consensus 8 ~~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~~~~~~~~~~~~ 87 (551)
+.--+|+|.+.||.-. ..++..+.. .| -|+. | -+.+++|+.+.+++|+-..--.+...|+++
T Consensus 61 ~~~~~~v~avpGNcD~-~~v~~~l~~---------~~----~~v~--~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~ 122 (226)
T COG2129 61 KELGIPVLAVPGNCDP-PEVIDVLKN---------AG----VNVH--G--RVVEIGGYGFVGFGGSNPTPFNTPREFSED 122 (226)
T ss_pred HhcCCeEEEEcCCCCh-HHHHHHHHh---------cc----cccc--c--ceEEecCcEEEEecccCCCCCCCccccCHH
Confidence 3456899999998544 456665541 11 2332 2 577899999999888743222223468888
Q ss_pred HHHHHHH-hh-cCCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCceeecccccc
Q 008855 88 DVDALRA-LA-EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSN 165 (551)
Q Consensus 88 dv~~l~~-~~-~~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fyEr~Py~~ 165 (551)
++.+... +- .....+-||+||--|.+-.-- .|.+. .-+||..|.++..+++|+-+.+||-|. .+-
T Consensus 123 ~I~s~l~~~v~~~~~~~~Il~~HaPP~gt~~d-----~~~g~--~hvGS~~vr~~ieefqP~l~i~GHIHE------s~G 189 (226)
T COG2129 123 EIYSKLKSLVKKADNPVNILLTHAPPYGTLLD-----TPSGY--VHVGSKAVRKLIEEFQPLLGLHGHIHE------SRG 189 (226)
T ss_pred HHHHHHHHHHhcccCcceEEEecCCCCCcccc-----CCCCc--cccchHHHHHHHHHhCCceEEEeeecc------ccc
Confidence 8766543 21 122222299999999987422 13221 248999999999999999999998543 122
Q ss_pred CCCCceeEEEeccCCC
Q 008855 166 VDAVHVTRFLGLAPVG 181 (551)
Q Consensus 166 ~~~~~~TRFi~L~~~g 181 (551)
.+...-|.+++=++.+
T Consensus 190 ~d~iG~TivVNPG~~~ 205 (226)
T COG2129 190 IDKIGNTIVVNPGPLG 205 (226)
T ss_pred ccccCCeEEECCCCcc
Confidence 2345569999988854
No 31
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.20 E-value=0.14 Score=51.00 Aligned_cols=126 Identities=10% Similarity=0.043 Sum_probs=70.6
Q ss_pred CCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEECCeEEEEEccccCCCCC----------
Q 008855 10 IPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQ---------- 79 (551)
Q Consensus 10 ~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~~~~---------- 79 (551)
.+.|+|++.|||+.-....+.+. ..+.++.+++.....+.+.+++|.++.+-......
T Consensus 70 l~~~v~~V~GNHD~~~~~~~~~~------------~~l~~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~ 137 (232)
T cd07393 70 LPGTKVLLKGNHDYWWGSASKLR------------KALEESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKV 137 (232)
T ss_pred CCCCeEEEeCCccccCCCHHHHH------------HHHHhcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccc
Confidence 46789999999995111112211 01223334444345556788999988652211111
Q ss_pred -cCCCCCHHHHHHHHHh-h---c-CCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEecc
Q 008855 80 -QFGTYSQDDVDALRAL-A---E-EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGS 153 (551)
Q Consensus 80 -~~~~~~~~dv~~l~~~-~---~-~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~ 153 (551)
....+...+...|... + . ...++-|+++|-.|..+. .++..+.++++....++.|+||
T Consensus 138 ~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~----------------~~~~~~~~~~~~~~v~~vl~GH 201 (232)
T cd07393 138 EEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANEN----------------GDDSPISKLIEEYGVDICVYGH 201 (232)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC----------------CCHHHHHHHHHHcCCCEEEECC
Confidence 0111223344444321 1 1 112467999998775431 1344566777777899999999
Q ss_pred CCceeecccc
Q 008855 154 KGVFYAREPY 163 (551)
Q Consensus 154 ~~~fyEr~Py 163 (551)
.|.+....||
T Consensus 202 ~H~~~~~~~~ 211 (232)
T cd07393 202 LHGVGRDRAI 211 (232)
T ss_pred CCCCcccccc
Confidence 8888776676
No 32
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=94.43 E-value=0.1 Score=47.14 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=48.7
Q ss_pred CCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCceeeccccccCCCCceeEEEec
Q 008855 100 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGL 177 (551)
Q Consensus 100 ~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fyEr~Py~~~~~~~~TRFi~L 177 (551)
.+.+|||||..|.++..+... ....|+..+.+++...+|+|+++||.|..+-.. .+ .....-|.+|+-
T Consensus 67 ~~~~ilv~H~~p~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~-~~-~~~~~~t~~in~ 134 (135)
T cd07379 67 EDTDILVTHGPPYGHLDLVSS--------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE-RV-LDTDGETLFVNA 134 (135)
T ss_pred CCCEEEEECCCCCcCcccccc--------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCcee-Ee-cccCCCEEEEeC
Confidence 578999999999887433211 125799999999999999999999987765321 22 223446888864
No 33
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=93.91 E-value=0.5 Score=46.62 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=81.2
Q ss_pred cCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecC-CceeEECCeEEEEEccccCCCCCcCCCCCHH
Q 008855 9 EIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEGQQFGTYSQD 87 (551)
Q Consensus 9 ~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~-~gv~~~~GLrIa~lsG~~~~~~~~~~~~~~~ 87 (551)
+..+|.|++.|||.....+...+. .... . .+. .-.+...|+|+.+|....... ..+.++++
T Consensus 68 ~~~~p~~~v~GNHD~~~~~~~~~~---------~~~~---~----~~~~~~~~~~~~~~~i~lds~~~~~--~~~~~~~~ 129 (240)
T cd07402 68 ALPIPVYLLPGNHDDRAAMRAVFP---------ELPP---A----PGFVQYVVDLGGWRLILLDSSVPGQ--HGGELCAA 129 (240)
T ss_pred hcCCCEEEeCCCCCCHHHHHHhhc---------cccc---c----ccccceeEecCCEEEEEEeCCCCCC--cCCEECHH
Confidence 347899999999998543333221 0000 0 111 124456799999997643221 12345677
Q ss_pred HHHHHHHh-hcCCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhc-CCCcEEeccCCceeecccccc
Q 008855 88 DVDALRAL-AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSN 165 (551)
Q Consensus 88 dv~~l~~~-~~~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~l-kPrYhFa~~~~~fyEr~Py~~ 165 (551)
+++-|... .......-|+++|.=|..+.... .+.. ...++..+.+++... +++++|+||.|..+.+.
T Consensus 130 ql~wL~~~L~~~~~~~~il~~H~pp~~~~~~~-----~~~~--~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~---- 198 (240)
T cd07402 130 QLDWLEAALAEAPDKPTLVFLHHPPFPVGIAW-----MDAI--GLRNAEALAAVLARHPNVRAILCGHVHRPIDGS---- 198 (240)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCccCCchh-----hhhh--hCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE----
Confidence 77777653 22334567999998776553210 0010 123466777888887 88999999987654321
Q ss_pred CCCCceeEEEeccCCC
Q 008855 166 VDAVHVTRFLGLAPVG 181 (551)
Q Consensus 166 ~~~~~~TRFi~L~~~g 181 (551)
..-++++..+..+
T Consensus 199 ---~~g~~~~~~gs~~ 211 (240)
T cd07402 199 ---WGGIPLLTAPSTC 211 (240)
T ss_pred ---ECCEEEEEcCcce
Confidence 1125666666654
No 34
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=93.63 E-value=0.096 Score=52.68 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=47.5
Q ss_pred CCCccEEEeCCCchhccccccccccccC-CCCCCCCCHHHHHHHHhcC----CCcEEeccCCce--ee---ccccccCCC
Q 008855 99 PGIVDLFLTNEWPSGVTNKAAASDMLVG-ISDSSNTDSTVSELVAEIK----PRYHIAGSKGVF--YA---REPYSNVDA 168 (551)
Q Consensus 99 ~~~vDIllT~~WP~~I~~~~~~~~~~~~-~~~~~~Gs~~i~~L~~~lk----PrYhFa~~~~~f--yE---r~Py~~~~~ 168 (551)
....+|||||.-|.|.-.......-.+- ......|++-+++.+..++ |+||..||.|.- |. |..+.- .
T Consensus 145 ~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~~r~~~~~--~ 222 (238)
T cd07397 145 PDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRGKGLRNMIAV--D 222 (238)
T ss_pred CCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCcccccccccceeee--c
Confidence 4567999999999998533222000000 0123679998877777777 999999996532 22 111111 1
Q ss_pred CceeEEEeccCC
Q 008855 169 VHVTRFLGLAPV 180 (551)
Q Consensus 169 ~~~TRFi~L~~~ 180 (551)
..-|-||+-|.+
T Consensus 223 ~~gt~y~N~a~~ 234 (238)
T cd07397 223 REGTVYLNAASV 234 (238)
T ss_pred CCCeEEEecccc
Confidence 234777776654
No 35
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=93.18 E-value=0.4 Score=47.78 Aligned_cols=146 Identities=9% Similarity=-0.066 Sum_probs=78.1
Q ss_pred CCceEEEecCCCCChHH-HHHHhhcccccCCCccCCceeccCeEEecCCcee-EECCeEEEEEccccCCC--C-C-----
Q 008855 10 IPIPTYFIGDYGVGAAK-VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSE--G-Q----- 79 (551)
Q Consensus 10 ~PipTyfigg~~~~~~~-~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~-~~~GLrIa~lsG~~~~~--~-~----- 79 (551)
..+|+|++.|||+.-.. ...++.. .. +.++|-...+. ..+++||.++.|.+.-. + .
T Consensus 60 ~~~pv~~v~GNHD~~~~~~~~~~~~------------~~--~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~ 125 (239)
T TIGR03729 60 KGIKVTFNAGNHDMLKDLTYEEIES------------ND--SPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEI 125 (239)
T ss_pred cCCcEEEECCCCCCCCCCCHHHHHh------------cc--chhhhcccccccCCCceEEEeeccceecccccccCHHHH
Confidence 45899999999985211 1122220 01 45556554444 34789999999843210 0 0
Q ss_pred ------------cCC-----CCCHHHHHHHHH-hhcCCCCccEEEeCCCchhcccc--ccccccccCCCCCCCCCHHHHH
Q 008855 80 ------------QFG-----TYSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNK--AAASDMLVGISDSSNTDSTVSE 139 (551)
Q Consensus 80 ------------~~~-----~~~~~dv~~l~~-~~~~~~~vDIllT~~WP~~I~~~--~~~~~~~~~~~~~~~Gs~~i~~ 139 (551)
... .+.+..++.|.. ++.....--|++||-=|...... ....... . .....||..+.+
T Consensus 126 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~~~~~~~~~~-~-~~~~~~s~~l~~ 203 (239)
T TIGR03729 126 LRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIYVPMDHRRFD-M-FNAFLGSQHFGQ 203 (239)
T ss_pred HHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCCCCEEEEEcccchHHHhcCCCCCcchh-h-hhhccChHHHHH
Confidence 001 112333343443 22333456899999877543210 0000000 1 012468888999
Q ss_pred HHHhcCCCcEEeccCCceeeccccccCCCCceeEEEec
Q 008855 140 LVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGL 177 (551)
Q Consensus 140 L~~~lkPrYhFa~~~~~fyEr~Py~~~~~~~~TRFi~L 177 (551)
++..-+|+.|++||.|.-+... ...-||+++-
T Consensus 204 li~~~~v~~~i~GH~H~~~~~~------~i~~~~~~~~ 235 (239)
T TIGR03729 204 LLVKYEIKDVIFGHLHRRFGPL------TIGGTTYHNR 235 (239)
T ss_pred HHHHhCCCEEEECCccCCCCCE------EECCEEEEec
Confidence 9988899999999866544211 1134777753
No 36
>PF05011 DBR1: Lariat debranching enzyme, C-terminal domain; InterPro: IPR007708 This presumed domain is found at the C terminus of lariat debranching enzyme. This domain is always found in association with a metallo-phosphoesterase domain IPR004843 from INTERPRO. RNA lariat debranching enzyme is capable of digesting a variety of branched nucleic acid substrates and multicopy single-stranded DNAs. The enzyme degrades intron lariat structures during splicing. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0006397 mRNA processing
Probab=92.80 E-value=0.085 Score=49.05 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=26.8
Q ss_pred CCCceeEEEeccCCCCcccceEEEEecCCCCCC
Q 008855 167 DAVHVTRFLGLAPVGNKEKQKFIHALSPTPAAT 199 (551)
Q Consensus 167 ~~~~~TRFi~L~~~g~~~K~kwlyAf~i~p~~~ 199 (551)
.....||||||+||++ +++||..++|.+...
T Consensus 5 ~~~~~TkFLALDKClP--~R~FLqviei~~~~~ 35 (145)
T PF05011_consen 5 ITNKTTKFLALDKCLP--RRDFLQVIEIPPDSS 35 (145)
T ss_pred cCCCccEEEeccccCC--CCcceEEEEecCCCC
Confidence 3578899999999998 788999999987654
No 37
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=92.76 E-value=0.16 Score=50.35 Aligned_cols=72 Identities=21% Similarity=0.201 Sum_probs=44.0
Q ss_pred CCEEEE-EecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEE--ecCCC-CCeeEEEEE
Q 008855 356 GEYYYC-ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKR-GTHANLQAV 431 (551)
Q Consensus 356 g~~~yl-~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~~~v~~E--~~~~~-~~H~HihvV 431 (551)
++..|+ .++|.|+.+-|+|||-.+--.--..|+.....-+.++. ..-+ +.+|++ -.++. ..|-|+|+|
T Consensus 90 ~s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL------~~ld--glvFYNsGp~aGaSq~HkHLQi~ 161 (298)
T COG4360 90 ISDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVL------CGLD--GLVFYNSGPIAGASQDHKHLQIV 161 (298)
T ss_pred CchhHhhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHHH------hccc--ceEEecCCCCcCcCCCccceeEe
Confidence 344554 57899999999999987644433334433222222111 1123 378887 23333 479999999
Q ss_pred ecCc
Q 008855 432 PIPT 435 (551)
Q Consensus 432 Pvp~ 435 (551)
|.|.
T Consensus 162 pmPf 165 (298)
T COG4360 162 PMPF 165 (298)
T ss_pred eccc
Confidence 9994
No 38
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=92.15 E-value=0.4 Score=48.79 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=68.2
Q ss_pred eeccCeEEecCCceeEECCeEEEEEccccCCCCCcCCCCCHHHHHHHHH-hhcCCCCccEEEeCCCchhccccccccccc
Q 008855 46 KVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDML 124 (551)
Q Consensus 46 ~v~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~~~~~~~~~~~~dv~~l~~-~~~~~~~vDIllT~~WP~~I~~~~~~~~~~ 124 (551)
.+--|.+||-.+. +++.|+||=+.+=.-.-.. ..|...--.++.. -....++||||+||-=|.|. ++. ++
T Consensus 161 ~lLTN~iYLqD~~-vtv~G~~Iygspw~p~~~g---~~f~l~rg~~~ld~W~~ip~~iDvL~tHtPPlG~---gd~--~~ 231 (305)
T KOG3947|consen 161 SLLTNCIYLQDSE-VTVRGVRIYGSPWTPLLPG---WAFNLPRGQSLLDKWNQIPGGIDVLITHTPPLGH---GDL--VP 231 (305)
T ss_pred chhceeEEEecCc-EEEEEEEEecCCCCcccCc---hhhhhhhhHhhhHHHhcCccccceeccCCCCCCc---chh--cc
Confidence 4678999999977 5568898865432210000 0111111111111 01124789999999988884 332 22
Q ss_pred cCCCCCCCCCH-HHHHHHHhcCCCcEEeccCCceeeccccccCCCCceeEEEeccCC
Q 008855 125 VGISDSSNTDS-TVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 180 (551)
Q Consensus 125 ~~~~~~~~Gs~-~i~~L~~~lkPrYhFa~~~~~fyEr~Py~~~~~~~~TRFi~L~~~ 180 (551)
..+...+|+. ....+...++|+||.-||-|.-|--. +...|+||+-+-|
T Consensus 232 -~~~gqr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvt------a~G~t~fina~~C 281 (305)
T KOG3947|consen 232 -VFSGQRNGCVELLNTVERRVQPKYHVFGHVHEGHGVT------ADGYTTFINAELC 281 (305)
T ss_pred -cccCcccCHHHHHHhHhhccccceEEeeeeecCceee------ecCccccccHHHh
Confidence 1122346765 56666677999999999844333211 3556999876655
No 39
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=91.86 E-value=0.25 Score=54.28 Aligned_cols=103 Identities=21% Similarity=0.437 Sum_probs=66.5
Q ss_pred cCCCCcccceEEEEecCCCCCCCchhhhcCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCcccccccccccccCCCC
Q 008855 178 APVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGG 257 (551)
Q Consensus 178 ~~~g~~~K~kwlyAf~i~p~~~~~~~~l~~~p~~~T~~Pf~~~~~~~~~~~~~k~~~~~~~~~~~~r~~~~~~~~k~~~~ 257 (551)
+.++.+ .--||.|.|.|=+.. .--+=|+|||..+. +..++|. ...|. |
T Consensus 187 ~~ys~D--eFrMy~fKir~C~R~-------~shDwteCPf~Hpg-----EkARRRD-----PRkyh-Y------------ 234 (528)
T KOG1595|consen 187 GIYSSD--EFRMYSFKIRRCSRP-------RSHDWTECPFAHPG-----EKARRRD-----PRKYH-Y------------ 234 (528)
T ss_pred cccccc--ceEEEeeeecccCCc-------cCCCcccCCccCCC-----cccccCC-----ccccc-c------------
Confidence 566653 346999999887642 23477999997422 1111111 01110 1
Q ss_pred CCCCcceeeeccCCCCCCCcccccCCc----hhhhhhhcccchhhhhcCCcCCCCCccccCCCCC
Q 008855 258 DGDKMCFKFIYSGSCPRGEKCNFRHDT----DAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQN 318 (551)
Q Consensus 258 ~~~~~c~~~~~~g~~~~g~~c~~~~~~----~~~~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~ 318 (551)
-..+|=.|+. |+|.+|+.|.|+|-- .+-+.|-.+.|+|- |.|.+ +-|.+.|..+.
T Consensus 235 -s~tpCPefrk-G~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eq 293 (528)
T KOG1595|consen 235 -SSTPCPEFRK-GSCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQ 293 (528)
T ss_pred -cCccCccccc-CCCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecChHH
Confidence 1126755665 899999999999974 46678888889764 77777 77888888764
No 40
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=91.43 E-value=1.3 Score=46.76 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=56.0
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCC--------C--------------eEEEEeccccCCCCCCCHHHHH
Q 008855 336 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVE--------D--------------HVLVIPVEHVPNTISTSPECEK 393 (551)
Q Consensus 336 ~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~--------G--------------H~LIIP~~H~~s~~~l~~e~~~ 393 (551)
..|+||-.|..... -+..-+-.++++-+++|... + =++|-.-.|..++.+++.+.+.
T Consensus 38 ~~CPfCpg~~~~~~-~~~~~~w~~~v~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~ 116 (329)
T cd00608 38 PDCPLCPGNERADT-GEQNPDYDVRVFENDFPALKPDAPAPEDSDDGLFRTAPARGRCEVICFSPDHNLTLAEMSVAEIR 116 (329)
T ss_pred CCCCcCCCCCCCCC-CCCCCCCeEEEECCCCccccCCCCCCcccCCcccccCCcceeEEEEEECCcccCChhhCCHHHHH
Confidence 56999987753210 01111233455555665321 1 3567788899999999988777
Q ss_pred HHHHH-HHHHHHHHHhcCC-ceEEEEe---cCCC-CCeeEEEEEecC
Q 008855 394 ELGRF-QNSLMMYYKNQGK-EAVFFEW---LSKR-GTHANLQAVPIP 434 (551)
Q Consensus 394 Ei~~~-~~~L~~~~~~~g~-~~v~~E~---~~~~-~~H~HihvVPvp 434 (551)
.+... ++.+..+.+..+. -+.+|++ .++. ..|-|.|++-.|
T Consensus 117 ~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~~ 163 (329)
T cd00608 117 EVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWALP 163 (329)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeCC
Confidence 77654 4444444432233 2455662 2222 479999987543
No 41
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=90.29 E-value=0.083 Score=34.68 Aligned_cols=24 Identities=46% Similarity=1.122 Sum_probs=18.4
Q ss_pred CcceeeeccCCCCCCCcccccCCc
Q 008855 261 KMCFKFIYSGSCPRGEKCNFRHDT 284 (551)
Q Consensus 261 ~~c~~~~~~g~~~~g~~c~~~~~~ 284 (551)
.+|..|..+|.|+.|+.|+|.|++
T Consensus 4 ~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 4 KLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp SB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccChhhccCCccCCCCCcCccCCC
Confidence 468889999999999999999974
No 42
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=90.03 E-value=0.53 Score=50.60 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=41.0
Q ss_pred CCEEEEEecCCCCCCCeEEEEec--cccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCceEEEEec-CC-CCCeeEEEE
Q 008855 356 GEYYYCALPKGPLVEDHVLVIPV--EHVPNTISTSPECEKELGRFQNSLMMYYKNQ-GKEAVFFEWL-SK-RGTHANLQA 430 (551)
Q Consensus 356 g~~~yl~l~kgPl~~GH~LIIP~--~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~-g~~~v~~E~~-~~-~~~H~Hihv 430 (551)
++...++++..|+..||+||||- .|.+-..+. +.. .+ ++.-+.... ..-.++|+.. +. ...|+|.|.
T Consensus 168 ~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~--~~l----~l--a~~~a~~~~~p~frvgYNSlGA~ASvNHLHFQa 239 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDP--DSF----LL--ALYMAAEANNPYFRVGYNSLGAFATINHLHFQA 239 (403)
T ss_pred CCccEEEEeCCCCccCeEEEcCCcccCCCeEecH--HHH----HH--HHHHHHhcCCCcEEEEecCCccccCcceeeeee
Confidence 44446788999999999999964 577765442 221 11 111122222 2224566621 22 357999999
Q ss_pred EecC
Q 008855 431 VPIP 434 (551)
Q Consensus 431 VPvp 434 (551)
.-.+
T Consensus 240 ~yl~ 243 (403)
T PLN03103 240 YYLA 243 (403)
T ss_pred cccC
Confidence 8653
No 43
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=89.43 E-value=0.72 Score=47.17 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=55.2
Q ss_pred CCCCcc-----cCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 008855 335 SKECWF-----CLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK 407 (551)
Q Consensus 335 ~~~C~F-----C~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~ 407 (551)
..+|-+ |- ..+++.||-++++..++.|=-.+-|--+||||++|+.++.++++-+..++-...+.|...+.
T Consensus 198 hgk~ll~dy~~~E---~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Kyd 272 (354)
T KOG2958|consen 198 HGKCLLMDYVKQE---ALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYD 272 (354)
T ss_pred cCCchHHHHHHHH---HhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHH
Confidence 356766 53 34688899899998888886667777899999999999999999888887777766655444
No 44
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=86.64 E-value=3.6 Score=43.43 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=42.7
Q ss_pred CeEEEE--eccccCCCCCCCHHHHHHHHHHHH-HHHHHHHhcCC-ceEEEEec---CCC-CCeeEEEEEecCc
Q 008855 371 DHVLVI--PVEHVPNTISTSPECEKELGRFQN-SLMMYYKNQGK-EAVFFEWL---SKR-GTHANLQAVPIPT 435 (551)
Q Consensus 371 GH~LII--P~~H~~s~~~l~~e~~~Ei~~~~~-~L~~~~~~~g~-~~v~~E~~---~~~-~~H~HihvVPvp~ 435 (551)
|++.|| --.|..++.+++.+...++.++.+ .++++.+...+ =+.+|++- ++. ..|-|.|++-.|.
T Consensus 93 g~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a~~~ 165 (338)
T COG1085 93 GKSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVALPV 165 (338)
T ss_pred cceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceeeccc
Confidence 655544 567999999999999888887755 44455554222 35566621 222 4799999986654
No 45
>PLN02643 ADP-glucose phosphorylase
Probab=86.36 E-value=6.3 Score=41.74 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=37.6
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHHHH-HHHHHHHHhcCC-ceEEEEec---CCC-CCeeEEEEEecC
Q 008855 373 VLVIPVEHVPNTISTSPECEKELGRFQ-NSLMMYYKNQGK-EAVFFEWL---SKR-GTHANLQAVPIP 434 (551)
Q Consensus 373 ~LIIP~~H~~s~~~l~~e~~~Ei~~~~-~~L~~~~~~~g~-~~v~~E~~---~~~-~~H~HihvVPvp 434 (551)
++|-.-+|..++.+++.+.+..+...- +.+..+.+..+. -+.+|++. ++. ..|-|.|++-.|
T Consensus 110 Vii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~ 177 (336)
T PLN02643 110 VVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALP 177 (336)
T ss_pred EEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecC
Confidence 345566799999999988777766543 333333222233 25557722 222 479999988544
No 46
>smart00356 ZnF_C3H1 zinc finger.
Probab=86.12 E-value=0.49 Score=30.37 Aligned_cols=23 Identities=39% Similarity=1.018 Sum_probs=19.6
Q ss_pred CcceeeeccCCCCCCCcccccCCc
Q 008855 261 KMCFKFIYSGSCPRGEKCNFRHDT 284 (551)
Q Consensus 261 ~~c~~~~~~g~~~~g~~c~~~~~~ 284 (551)
.+|..| ..|.|+.|..|+|.|+.
T Consensus 5 ~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 5 ELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CcCcCc-cCCCCCCCCCcCCCCcC
Confidence 368888 88999999999998863
No 47
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=84.53 E-value=1.4 Score=39.72 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=46.9
Q ss_pred ccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCceeeccccccCCCCceeEEEeccCC
Q 008855 102 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 180 (551)
Q Consensus 102 vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fyEr~Py~~~~~~~~TRFi~L~~~ 180 (551)
+|||++|.||.++..... ....|+..+.+++...+|+++|+||.|..+...- ++ ....-|++++.+-+
T Consensus 57 ~~Ilv~H~pp~~~~~~~~---------~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~~-~~-~~~~~t~~~n~~~~ 124 (129)
T cd07403 57 VDILLTHAPPAGIGDGED---------FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQL-RI-RRVGDTTVINAYGY 124 (129)
T ss_pred cCEEEECCCCCcCcCccc---------ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCccc-cc-cccCCEEEEeCCcE
Confidence 899999999987743111 1246888999999999999999999775553210 00 12345899876543
No 48
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=83.03 E-value=1.1 Score=42.26 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=42.9
Q ss_pred CEEEEEecCCCCCCCeEEEEec-cccCCCCCC---CHHHHHHHHHHHHHHHHHHHhcCCceEEEE--ecCCC-CCeeEEE
Q 008855 357 EYYYCALPKGPLVEDHVLVIPV-EHVPNTIST---SPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKR-GTHANLQ 429 (551)
Q Consensus 357 ~~~yl~l~kgPl~~GH~LIIP~-~H~~s~~~l---~~e~~~Ei~~~~~~L~~~~~~~g~~~v~~E--~~~~~-~~H~Hih 429 (551)
+.+.|+-+++|=+.-|.||.|. .=++++..+ .-+..+||...-.++...+...+. ..+|. +.+.. ..|+|+|
T Consensus 23 d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~-~~~f~vG~HavPSM~~LHLH 101 (184)
T KOG0562|consen 23 DDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEAL-CNYFRVGFHAVPSMNNLHLH 101 (184)
T ss_pred ccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhh-hhheeeeeccCcchhheeEE
Confidence 4788888999999999999995 222222222 222344444444445544443211 11222 12222 3699999
Q ss_pred EEec
Q 008855 430 AVPI 433 (551)
Q Consensus 430 vVPv 433 (551)
||-.
T Consensus 102 VISk 105 (184)
T KOG0562|consen 102 VISK 105 (184)
T ss_pred Eeec
Confidence 9974
No 49
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=80.48 E-value=1.3 Score=43.49 Aligned_cols=51 Identities=29% Similarity=0.855 Sum_probs=43.2
Q ss_pred cceeeeccCCCCCCCcccccCCchhhhhhhcccchhhhhcCCcCCCCCccccCCCCC
Q 008855 262 MCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQN 318 (551)
Q Consensus 262 ~c~~~~~~g~~~~g~~c~~~~~~~~~~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~ 318 (551)
-|+.+...|-|-+|.-|+|+|.|-.. -||+.|. .|+|....+|-++|+.++
T Consensus 208 ycryynangicgkgaacrfvheptrk-----ticpkfl-ngrcnkaedcnlsheldp 258 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHEPTRK-----TICPKFL-NGRCNKAEDCNLSHELDP 258 (377)
T ss_pred EEEEecCCCcccCCceeeeecccccc-----ccChHHh-cCccCchhcCCcccccCc
Confidence 57777788899999999999998654 6898876 588888889999999875
No 50
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=79.88 E-value=1.5 Score=38.73 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCce
Q 008855 98 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 157 (551)
Q Consensus 98 ~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~f 157 (551)
......|+++|.-|.......... .....+...+..+++.-+++++|+||.|.|
T Consensus 147 ~~~~~~iv~~H~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 147 KNDDPVIVFTHHPPYSSSSDSSSY------GNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EEESEEEEEESSSSSTTSSSTHHH------SSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccceeEEEecCCCCcccccccc------chhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 345789999999988775433210 001346778999999999999999998764
No 51
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=79.57 E-value=12 Score=39.83 Aligned_cols=61 Identities=16% Similarity=0.005 Sum_probs=37.2
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHHH-HHHHHHHHHhcCCceEEEEec---CCC-CCeeEEEEEecC
Q 008855 373 VLVIPVEHVPNTISTSPECEKELGRF-QNSLMMYYKNQGKEAVFFEWL---SKR-GTHANLQAVPIP 434 (551)
Q Consensus 373 ~LIIP~~H~~s~~~l~~e~~~Ei~~~-~~~L~~~~~~~g~~~v~~E~~---~~~-~~H~HihvVPvp 434 (551)
++|-.-+|..++.+++.+.+..+... ++.+..+.+... =+.+||+. .+. ..|-|.|++-.|
T Consensus 108 Viv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~i~-yv~iF~N~G~~~GaSl~HPH~Qi~a~p 173 (346)
T PRK11720 108 VICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKTYP-WVQVFENKGAAMGCSNPHPHGQIWANS 173 (346)
T ss_pred EEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhCCc-EEEEEeecCcccCcCCCCCceeeeeCC
Confidence 45557789999999998877776644 333333333212 25557722 222 479998887543
No 52
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=79.54 E-value=13 Score=39.64 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=54.9
Q ss_pred CCCcccCCCCCCCcceEEEECC-EEEEEecCCCCCC--------------------C-e-EEEEeccccCCCCCCCHHHH
Q 008855 336 KECWFCLSSPSVESHLIVSVGE-YYYCALPKGPLVE--------------------D-H-VLVIPVEHVPNTISTSPECE 392 (551)
Q Consensus 336 ~~C~FC~~~~~~~~hlIvs~g~-~~yl~l~kgPl~~--------------------G-H-~LIIP~~H~~s~~~l~~e~~ 392 (551)
..|+||-.|...... | .-+= .++|+-+++|... | | ++|=--+|..++.+|+.+.+
T Consensus 50 ~~CPfcpgne~~~~~-~-~~~w~~~rV~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~m~~~~i 127 (347)
T TIGR00209 50 PDCYLCPGNKRVTGD-L-NPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAAL 127 (347)
T ss_pred CCCCCCCCCCCCCCC-c-CCCCceEEEEeCCCcccccCCCCCCcCCCcccccCCCCeeEEEEEeCCCccCChhHCCHHHH
Confidence 469999987543222 2 1111 3455555666321 2 2 34456679999999998877
Q ss_pred HHHHHH-HHHHHHHHHhcCC-ceEEEEecC---CC-CCeeEEEEEecC
Q 008855 393 KELGRF-QNSLMMYYKNQGK-EAVFFEWLS---KR-GTHANLQAVPIP 434 (551)
Q Consensus 393 ~Ei~~~-~~~L~~~~~~~g~-~~v~~E~~~---~~-~~H~HihvVPvp 434 (551)
..+... ++.+..+. + +. -+.+||+.+ +. ..|-|-||+-.|
T Consensus 128 ~~v~~~~~~r~~~l~-~-~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p 173 (347)
T TIGR00209 128 TEIVKTWQEQTAELG-K-TYPWVQIFENKGAAMGCSNPHPHGQIWANS 173 (347)
T ss_pred HHHHHHHHHHHHHHH-h-CCcEEEEEeecCcccCcCCCCCceeeeeCC
Confidence 776644 33444333 2 33 356677322 22 479999988544
No 53
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=76.05 E-value=29 Score=35.20 Aligned_cols=122 Identities=13% Similarity=0.148 Sum_probs=62.9
Q ss_pred cCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEECCeEEEEEccccCCCCCcCCCCCHHH
Q 008855 9 EIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDD 88 (551)
Q Consensus 9 ~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~~~~~~~~~~~~d 88 (551)
++++|+|++.|||.....+.+.+.. .+ +.++ ..++...++++..|...... ...+.+.+++
T Consensus 83 ~l~~Pv~~v~GNHD~~~~~~~~~~~---------~~--~~~~------~~~~~~~~~~~i~Lds~~~g--~~~G~l~~~q 143 (275)
T PRK11148 83 PLRKPCVWLPGNHDFQPAMYSALQD---------AG--ISPA------KHVLIGEHWQILLLDSQVFG--VPHGELSEYQ 143 (275)
T ss_pred hcCCcEEEeCCCCCChHHHHHHHhh---------cC--CCcc------ceEEecCCEEEEEecCCCCC--CcCCEeCHHH
Confidence 4678999999999975444443320 01 1111 11122245666666543211 1124567788
Q ss_pred HHHHHHh-hcCCCCcc-EEEeC-CCchhccccccccccccCCCCCCCCCHHHHHHHHhc-CCCcEEeccCCcee
Q 008855 89 VDALRAL-AEEPGIVD-LFLTN-EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFY 158 (551)
Q Consensus 89 v~~l~~~-~~~~~~vD-IllT~-~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~l-kPrYhFa~~~~~fy 158 (551)
++-|... +.....-= |++.| -+|.+..-. + . .....+..+.+|++.- ..+..|+||.|.-+
T Consensus 144 l~wL~~~L~~~~~~~~vv~~hH~P~~~~~~~~-d------~--~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~ 208 (275)
T PRK11148 144 LEWLERKLADAPERHTLVLLHHHPLPAGCAWL-D------Q--HSLRNAHELAEVLAKFPNVKAILCGHIHQEL 208 (275)
T ss_pred HHHHHHHHhhCCCCCeEEEEcCCCCCCCcchh-h------c--cCCCCHHHHHHHHhcCCCceEEEecccChHH
Confidence 7777753 22222222 44543 445443210 1 0 0123455677777765 67899999977543
No 54
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=75.25 E-value=12 Score=34.80 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=34.4
Q ss_pred CCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCcee
Q 008855 98 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 158 (551)
Q Consensus 98 ~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fy 158 (551)
...+-.|++||-=|......... ..... ...++..+.+++..-+++++++||.|.-+
T Consensus 94 d~~~~~vv~~HhpP~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~~v~~~i~GH~H~~~ 150 (166)
T cd07404 94 DFRGKTVVVTHHAPSPLSLAPQY---GDSLV-NAAFAVDLDDLILADPIDLWIHGHTHFNF 150 (166)
T ss_pred CCCCCEEEEeCCCCCccccCccc---cCCCc-chhhhhccHhHHhhcCCCEEEECCccccc
Confidence 33467899999988765211100 00100 11345556777778899999999976544
No 55
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=72.88 E-value=71 Score=32.42 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=51.8
Q ss_pred eeEECCeEEEEEccccCCCCCcCCCCCHHHHHHHHHh-hc-CCCCccEEEeCCCchhcc--cccccc--c--ccc--CCC
Q 008855 59 NFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL-AE-EPGIVDLFLTNEWPSGVT--NKAAAS--D--MLV--GIS 128 (551)
Q Consensus 59 v~~~~GLrIa~lsG~~~~~~~~~~~~~~~dv~~l~~~-~~-~~~~vDIllT~~WP~~I~--~~~~~~--~--~~~--~~~ 128 (551)
++.++|.++..|-++...... .+.......+-|... +. .....=|||||-=.-... ..+... . .+. +..
T Consensus 120 ~~~~~~~~fV~Lds~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~ 198 (257)
T cd08163 120 VIDVGNHTFVILDTISLSNKD-DPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQ 198 (257)
T ss_pred EEEECCEEEEEEccccccCCc-ccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCccccCCCCCCCCCcc
Confidence 445677777777665321111 122223333333332 21 223345999987543322 122111 0 111 111
Q ss_pred -CCCCCCHHHHHHHHhcCCCcEEeccCCceee
Q 008855 129 -DSSNTDSTVSELVAEIKPRYHIAGSKGVFYA 159 (551)
Q Consensus 129 -~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fyE 159 (551)
...+.......|+..|||+--||||.|.|-+
T Consensus 199 yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~ 230 (257)
T cd08163 199 YQNLLEPSLSEVILKAVQPVIAFSGDDHDYCE 230 (257)
T ss_pred ceeecCHHHHHHHHHhhCCcEEEecCCCccce
Confidence 1135566778999999999999999877665
No 56
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=71.54 E-value=3 Score=43.65 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=37.4
Q ss_pred EEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC--CceEEEEecCCC-CCeeEEEEEecCc
Q 008855 360 YCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG--KEAVFFEWLSKR-GTHANLQAVPIPT 435 (551)
Q Consensus 360 yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g--~~~v~~E~~~~~-~~H~HihvVPvp~ 435 (551)
.|++++.|+..||+||||.- .++.+.. .....++-++.-|....+ +.+.++--.+.. +.|+|.|..=.|.
T Consensus 169 vvaIN~sPie~~H~LiiP~V-----~kc~pQr-it~~al~lav~~m~~~dd~~frlgyNSlga~AsVNHLHfha~y~p~ 241 (431)
T KOG2720|consen 169 VVAINVSPIEYGHVLIIPRV-----LKCLPQR-ITHKALLLAVTMMAEADDPYFRLGYNSLGAFASVNHLHFHAYYLPM 241 (431)
T ss_pred eEEEecCccccCcEEEecch-----hccCcce-eeHHHHHHHHHHHHhcCCchhheecccchhhhhhhhhhhhhhhccc
Confidence 45677889999999999963 3332221 112233334444444332 233332212222 4699999864443
No 57
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=64.58 E-value=4.8 Score=42.15 Aligned_cols=60 Identities=30% Similarity=0.696 Sum_probs=49.0
Q ss_pred CCcceeeeccCCCCC-CCcccccCCchhh------------hhhhcccchhhhhcCCcCCCCCccccCCCCCC
Q 008855 260 DKMCFKFIYSGSCPR-GEKCNFRHDTDAR------------EQCLRGVCLDFIIKGKCEKGPECSYKHSLQND 319 (551)
Q Consensus 260 ~~~c~~~~~~g~~~~-g~~c~~~~~~~~~------------~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~~ 319 (551)
..+|.-+..+|+|.- |..|+|.|-.... ..+-.-.|..|...|.|.-|.+|.+.|.....
T Consensus 132 t~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 132 TPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred CCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccc
Confidence 358999999999998 9999997664322 34556679999999999999999999987754
No 58
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=64.06 E-value=21 Score=40.40 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=29.0
Q ss_pred ecCCCCCCCeEE-EEeccccCCCCCCCHHHHHHHHHH
Q 008855 363 LPKGPLVEDHVL-VIPVEHVPNTISTSPECEKELGRF 398 (551)
Q Consensus 363 l~kgPl~~GH~L-IIP~~H~~s~~~l~~e~~~Ei~~~ 398 (551)
+++|+++-+.++ |.|..-.....+++-..+.++...
T Consensus 409 i~~G~IT~~di~~v~PF~N~l~v~~ltG~~Lk~~LE~ 445 (550)
T TIGR01530 409 ILPGEITFNDAYTFLPFGNTLVLVDMEGAELKQIIED 445 (550)
T ss_pred CCCCCcCHHHhheeCCcCceEEEEEecHHHHHHHHHH
Confidence 467889988877 889888888888888877777664
No 59
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=63.59 E-value=27 Score=33.73 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=56.5
Q ss_pred cCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCcee-EECCeEEEEEccccCCCCCcCCCCCHH
Q 008855 9 EIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQD 87 (551)
Q Consensus 9 ~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~-~~~GLrIa~lsG~~~~~~~~~~~~~~~ 87 (551)
..++|+|++.|||+........... .--..|+.+|....+. +..|.+|+..+-... ....+
T Consensus 61 ~~~~~v~~v~GNHD~~~~~~~~~~~-----------~l~~~~v~~L~~~~~~~~~~~~~i~i~G~~~~-------~~~~~ 122 (223)
T cd07385 61 KAPLGVYAVLGNHDYYSGDEENWIE-----------ALESAGITVLRNESVEISVGGATIGIAGVDDG-------LGRRP 122 (223)
T ss_pred CCCCCEEEECCCcccccCchHHHHH-----------HHHHcCCEEeecCcEEeccCCeEEEEEeccCc-------cccCC
Confidence 4578999999999974321111000 0012467777665544 456777765542111 01111
Q ss_pred HHHHHHHhhcCCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCceeeccc
Q 008855 88 DVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREP 162 (551)
Q Consensus 88 dv~~l~~~~~~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fyEr~P 162 (551)
+...... ......+.|+|+|. |..+. + +....-.|.+|||.|..==+.|
T Consensus 123 ~~~~~~~-~~~~~~~~I~l~H~-P~~~~-----------------------~-~~~~~~dl~l~GHtHggqi~~~ 171 (223)
T cd07385 123 DLEKALK-GLDEDDPNILLAHQ-PDTAE-----------------------E-AAAWGVDLQLSGHTHGGQIRLP 171 (223)
T ss_pred CHHHHHh-CCCCCCCEEEEecC-CChhH-----------------------H-hcccCccEEEeccCCCCEEecc
Confidence 1111111 12335689999996 33221 0 1344677999999665433334
No 60
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=62.87 E-value=83 Score=31.68 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=57.3
Q ss_pred CCeEEEEEccccCCCCC----cCCCCCHHHHHHHHH-hhcC-CCCccEEEeCCCchhccccccccccccCCCCCCCCCHH
Q 008855 63 HGLSVAYLSGRQSSEGQ----QFGTYSQDDVDALRA-LAEE-PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDST 136 (551)
Q Consensus 63 ~GLrIa~lsG~~~~~~~----~~~~~~~~dv~~l~~-~~~~-~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~ 136 (551)
.|++|.+|......... ..+..++++++.|.. +... ..+.-|+++|--+...... . ...+..
T Consensus 122 ~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~~~~~~IV~~HhP~~~~~~~--------~---~~~~~~- 189 (256)
T cd07401 122 GNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKSTNSNYTIWFGHYPTSTIISP--------S---AKSSSK- 189 (256)
T ss_pred CCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHhcccCCeEEEEEcccchhccCC--------C---cchhHH-
Confidence 68899888876432111 135678888888875 3322 2356799999866432110 0 012223
Q ss_pred HHHHHHhcCCCcEEeccCCceeeccccccCC
Q 008855 137 VSELVAEIKPRYHIAGSKGVFYAREPYSNVD 167 (551)
Q Consensus 137 i~~L~~~lkPrYhFa~~~~~fyEr~Py~~~~ 167 (551)
+.+++++.++.+.|+||.|..---.|.-+..
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~h~~~ 220 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPVHYAG 220 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceeeeecC
Confidence 7778888899999999987643326765543
No 61
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=62.13 E-value=14 Score=31.34 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=38.9
Q ss_pred ccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCceeecc
Q 008855 102 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYARE 161 (551)
Q Consensus 102 vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fyEr~ 161 (551)
=||+++|.+|.......... ..........++...+|.++|+||.|.++...
T Consensus 68 HDi~~~H~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 68 HDILLTHGPPYDPLDELSPD--------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred ceEEEeccCCCCCchhhccc--------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 35999999997765432211 11257789999999999999999988888754
No 62
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=59.89 E-value=80 Score=31.53 Aligned_cols=126 Identities=9% Similarity=-0.048 Sum_probs=63.5
Q ss_pred CCceEEEecCCCCCh----HHHHHHhhcccccCCCccCCceeccCeEEecCCceeEECCeEEEEEccccCCCCCcCCCCC
Q 008855 10 IPIPTYFIGDYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYS 85 (551)
Q Consensus 10 ~PipTyfigg~~~~~----~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~~~~~~~~~~ 85 (551)
.++|+|++.|||+.. ...+..... ..| +. + -.+..+|+|+..|...........+...
T Consensus 85 ~~vp~~~i~GNHD~~~~~~~~~~~~f~~--------~~g----~~-~-----y~~~~~~~~~i~lds~~~~~~~~~~~~~ 146 (262)
T cd07395 85 PDIPLVCVCGNHDVGNTPTEESIKDYRD--------VFG----DD-Y-----FSFWVGGVFFIVLNSQLFFDPSEVPELA 146 (262)
T ss_pred CCCcEEEeCCCCCCCCCCChhHHHHHHH--------HhC----Cc-c-----eEEEECCEEEEEeccccccCccccccch
Confidence 478999999999862 111121110 011 11 1 1234678898888654221111112345
Q ss_pred HHHHHHHHHh-hcC---CCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCce
Q 008855 86 QDDVDALRAL-AEE---PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 157 (551)
Q Consensus 86 ~~dv~~l~~~-~~~---~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~f 157 (551)
.++++-|... +.. ....-|+++|..|-........... .........+.++++.-.-...|+||.|..
T Consensus 147 ~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~----~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~ 218 (262)
T cd07395 147 QAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYF----NIPKSVRKPLLDKFKKAGVKAVFSGHYHRN 218 (262)
T ss_pred HHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccC----CcCHHHHHHHHHHHHhcCceEEEECccccC
Confidence 6666666642 222 3346699999877432211000000 000011234566666667789999997754
No 63
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=56.98 E-value=38 Score=34.40 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=60.6
Q ss_pred CCCCCCeEEEEeccccCCCCCC------CHHHHHHHHHHHHHHHHHHHhc-CCceEEEE--ecCCCC-CeeEEEEEecCc
Q 008855 366 GPLVEDHVLVIPVEHVPNTIST------SPECEKELGRFQNSLMMYYKNQ-GKEAVFFE--WLSKRG-THANLQAVPIPT 435 (551)
Q Consensus 366 gPl~~GH~LIIP~~H~~s~~~l------~~e~~~Ei~~~~~~L~~~~~~~-g~~~v~~E--~~~~~~-~H~HihvVPvp~ 435 (551)
.+.-+-|.|+||...+.-+.+- +++.|.+-+..+..+.+.+.+- .-..+... ...+++ .|+|||+--+
T Consensus 69 D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIHIsCl-- 146 (252)
T PRK05471 69 DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGRTQDQLHIHISCL-- 146 (252)
T ss_pred cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCccccceeeehhhC--
Confidence 3444669999999999887642 4577888888777777766531 22334444 123343 6888888765
Q ss_pred chHHHHHHHHHHHHHHcCCceeecc
Q 008855 436 SKAAAVQDIFNLAAEKLGFKFLATK 460 (551)
Q Consensus 436 ~~~~~~~~~F~~~~~~~~~~~~~~~ 460 (551)
-.++...+...+...+..|..++
T Consensus 147 --rp~v~~~L~~~~~~i~~~W~~lp 169 (252)
T PRK05471 147 --RPDVRAQLDNNLAAISSRWLPLP 169 (252)
T ss_pred --CHHHHHHHHHhcccCCCCceeCC
Confidence 34566677777777788898655
No 64
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=56.67 E-value=90 Score=31.52 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHH-hhc---CCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhc-CCCcEEeccCCc
Q 008855 82 GTYSQDDVDALRA-LAE---EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGV 156 (551)
Q Consensus 82 ~~~~~~dv~~l~~-~~~---~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~l-kPrYhFa~~~~~ 156 (551)
+...+++..-|.. ++. ....+ |+++|.=|.... .... ........+.+|+..- ..+++|+||.|.
T Consensus 158 G~l~~~Ql~WL~~~L~~~~~~~~~v-iV~~Hhp~~~~~-~~~~--------~~~~~~~~~~~ll~~~~~V~~v~~GH~H~ 227 (267)
T cd07396 158 GGIGEEQLQWLRNELQEADANGEKV-IIFSHFPLHPES-TSPH--------GLLWNHEEVLSILRAYGCVKACISGHDHE 227 (267)
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCeE-EEEEeccCCCCC-CCcc--------ccccCHHHHHHHHHhCCCEEEEEcCCcCC
Confidence 3456667666664 221 12334 777876332211 0000 0111234555666552 457999999877
Q ss_pred eee
Q 008855 157 FYA 159 (551)
Q Consensus 157 fyE 159 (551)
...
T Consensus 228 ~~~ 230 (267)
T cd07396 228 GGY 230 (267)
T ss_pred CCc
Confidence 653
No 65
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=56.11 E-value=19 Score=34.62 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=29.7
Q ss_pred CCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCceee
Q 008855 98 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYA 159 (551)
Q Consensus 98 ~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~fyE 159 (551)
.....-||++|.=..+..... ....+.....+......|+++||-|....
T Consensus 154 ~~~~~~Il~~H~~~~~~~~~~------------~~~~~~~~~~~~~~~~d~v~~GH~H~~~~ 203 (223)
T cd00840 154 DPDDFNILLLHGGVAGAGPSD------------SERAPFVPEALLPAGFDYVALGHIHRPQI 203 (223)
T ss_pred CCCCcEEEEEeeeeecCCCCc------------ccccccCcHhhcCcCCCEEECCCcccCee
Confidence 345678999997655553110 00122333344567788999999776553
No 66
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=55.71 E-value=80 Score=29.82 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=42.1
Q ss_pred EecCCCC--CCC--eEEE---EeccccCCCCCCCHHHHHHHHHHHHHHH-HHHHhcCCceEEEE-ecCCCC----CeeEE
Q 008855 362 ALPKGPL--VED--HVLV---IPVEHVPNTISTSPECEKELGRFQNSLM-MYYKNQGKEAVFFE-WLSKRG----THANL 428 (551)
Q Consensus 362 ~l~kgPl--~~G--H~LI---IP~~H~~s~~~l~~e~~~Ei~~~~~~L~-~~~~~~g~~~v~~E-~~~~~~----~H~Hi 428 (551)
..+..|+ .+| |++| +|+.+-+...+++++..++|.+|.+..- .-+ ..+.+++.|. ..+.++ .|+|+
T Consensus 77 l~NDwPY~~e~~I~HlVVWsK~~L~~d~~~gd~t~~~r~~I~~fv~~~f~~~~-~~~~~v~WF~N~~~LqSV~~v~H~HV 155 (158)
T PF12239_consen 77 LRNDWPYGFEPGIVHLVVWSKFPLPVDPETGDLTPESRELIEDFVQRTFVDRL-IPEDNVLWFKNWPSLQSVRAVEHIHV 155 (158)
T ss_pred EecCCCcCCCCCceEEEEEecCccccccccccccHHHHHHHHHHHHHHHHhhc-CCCccEEEEeCchhcCCcCcceEEEE
Confidence 3445664 454 8777 5676777778999999999998876433 222 2234677777 444453 46665
No 67
>PHA02546 47 endonuclease subunit; Provisional
Probab=54.19 E-value=47 Score=35.11 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=45.2
Q ss_pred cCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEECCeEEEEEccccCCCCCcCCCCCHHH
Q 008855 9 EIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDD 88 (551)
Q Consensus 9 ~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~~~~~~~~~~~~d 88 (551)
++.+|+|+|.|||-.... ....... ...--...+|+++.+....+++.|++|..+ +....++
T Consensus 74 ~~gi~v~~I~GNHD~~~~--~~~~~~~-----~~~ll~~~~~v~v~~~~~~v~i~g~~i~~l-----------P~~~~~~ 135 (340)
T PHA02546 74 EAGITLHVLVGNHDMYYK--NTIRPNA-----PTELLGQYDNITVIDEPTTVDFDGCSIDLI-----------PWICKEN 135 (340)
T ss_pred HCCCeEEEEccCCCcccc--cccccCc-----hHHHHhhCCCEEEeCCceEEEECCEEEEEC-----------CCCCHHH
Confidence 468999999999985210 0000000 000002347888888766677888877654 2223444
Q ss_pred HHHHHHhhcCCCCccEEEeCC
Q 008855 89 VDALRALAEEPGIVDLFLTNE 109 (551)
Q Consensus 89 v~~l~~~~~~~~~vDIllT~~ 109 (551)
.+.+..... .....|+|.|-
T Consensus 136 ~~~~~~~l~-~~~~~ill~H~ 155 (340)
T PHA02546 136 TEEILEFIK-NSKSEYCVGHW 155 (340)
T ss_pred HHHHHHHhc-cCCCcEEEEee
Confidence 444433222 24568999984
No 68
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=54.08 E-value=41 Score=34.13 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=59.2
Q ss_pred CCCCeEEEEeccccCCCCC------CCHHHHHHHHHHHHHHHHHHHh-cCCceEEEE--ecCCCC-CeeEEEEEecCcch
Q 008855 368 LVEDHVLVIPVEHVPNTIS------TSPECEKELGRFQNSLMMYYKN-QGKEAVFFE--WLSKRG-THANLQAVPIPTSK 437 (551)
Q Consensus 368 l~~GH~LIIP~~H~~s~~~------l~~e~~~Ei~~~~~~L~~~~~~-~g~~~v~~E--~~~~~~-~H~HihvVPvp~~~ 437 (551)
.-+-|.|+||...+.-+.+ -+++-|.+-+..+..+.+.+.+ -.-..+... ...+++ .|+|||+=-+
T Consensus 70 ~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIHIsCl---- 145 (250)
T TIGR00672 70 NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGRSQNHFHIHISCI---- 145 (250)
T ss_pred CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCcccccceeeHhhC----
Confidence 4466999999999988764 2567788888777777776653 111234444 123333 6888888664
Q ss_pred HHHHHHHHHHHHHHcCCceeecc
Q 008855 438 AAAVQDIFNLAAEKLGFKFLATK 460 (551)
Q Consensus 438 ~~~~~~~F~~~~~~~~~~~~~~~ 460 (551)
-.++.......+...+..|..++
T Consensus 146 rpdv~~~L~~~~~~i~~~W~~lp 168 (250)
T TIGR00672 146 RPDVRKQLDNNLKKISSRWLPLP 168 (250)
T ss_pred CHHHHHHHHHhcccccCCceeCC
Confidence 24566677777777788898665
No 69
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=54.07 E-value=6.9 Score=25.52 Aligned_cols=23 Identities=30% Similarity=0.820 Sum_probs=18.1
Q ss_pred ccchhhhhcCCcCCCCCccccCC
Q 008855 293 GVCLDFIIKGKCEKGPECSYKHS 315 (551)
Q Consensus 293 ~~c~~f~~~g~~~~Gr~~~~~h~ 315 (551)
.+|..|...|.|..|.+|.+.|.
T Consensus 4 ~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 4 KLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccChhhccCCccCCCCCcCccCC
Confidence 57999999999999999999885
No 70
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=53.52 E-value=40 Score=32.38 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=49.4
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCC-----------------------CC-eEEEE-eccccCCCCCCCHH
Q 008855 336 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLV-----------------------ED-HVLVI-PVEHVPNTISTSPE 390 (551)
Q Consensus 336 ~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~-----------------------~G-H~LII-P~~H~~s~~~l~~e 390 (551)
..|.||-.+........ .......++.+++|.. -| |=+|| --.|-.++.+|+.+
T Consensus 52 ~~cpfcpg~e~~~~~~~-~~~~~~rv~~N~fpal~~~~~~~~~~~i~~~~~~~~~~~~G~hEViIe~p~h~~~~~~~~~~ 130 (183)
T PF01087_consen 52 PMCPFCPGNEEVNEIFN-PDYWSVRVFPNKFPALSPENNYIRTDAIAKNGLFKSESGYGAHEVIIESPKHERTLADMSVK 130 (183)
T ss_dssp TT-TTSTT-CGCCCECT-T-SSSEEEEE-TT-SSBCCGTTTHB------SSS-EEE-BEEEEEEES-SSTT--GGGS-HH
T ss_pred CCCCcCCCCcccccccc-ccccchhhhhccchhhCccccCcccccccCCCcccccCCCCCeEEEEeCCCCCCChhhCCHH
Confidence 46999987654321100 0014455665655521 25 44444 45677889999988
Q ss_pred HHHHHHHH-HHHHHHHHHhcCC-ceEEEEec---CCC-CCeeEEEEEecC
Q 008855 391 CEKELGRF-QNSLMMYYKNQGK-EAVFFEWL---SKR-GTHANLQAVPIP 434 (551)
Q Consensus 391 ~~~Ei~~~-~~~L~~~~~~~g~-~~v~~E~~---~~~-~~H~HihvVPvp 434 (551)
...+|... +.....+.+..+. -+.+||+. ++. ..|-|-|++-.|
T Consensus 131 ~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a~~ 180 (183)
T PF01087_consen 131 EIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIALP 180 (183)
T ss_dssp HHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEecCC
Confidence 88777755 3344443333333 46778832 222 369999998765
No 71
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.86 E-value=16 Score=34.20 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=28.7
Q ss_pred CceeEECCeEEEEEccccCCCCCcCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 008855 57 SGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTN 108 (551)
Q Consensus 57 ~gv~~~~GLrIa~lsG~~~~~~~~~~~~~~~dv~~l~~~~~~~~~vDIllT~ 108 (551)
.+++|+.-+|||+.+|-.- .-..|-++|..++.. -+||||||-
T Consensus 72 ~kvvtvGqfkIG~chGhqV--------iP~gd~~sL~~LaRq-ldvDILl~G 114 (183)
T KOG3325|consen 72 NKVVTVGQFKIGLCHGHQV--------IPWGDPESLALLARQ-LDVDILLTG 114 (183)
T ss_pred cceEEeccEEEEeecCcEe--------ecCCCHHHHHHHHHh-cCCcEEEeC
Confidence 3888999999999999532 112334555554422 479999973
No 72
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=52.25 E-value=35 Score=35.22 Aligned_cols=52 Identities=13% Similarity=-0.109 Sum_probs=31.4
Q ss_pred EEecCCCCCh--HHHHHH---hhcccccCCCccCCceeccCeEEecC----------CceeEEC-CeEEEEEccc
Q 008855 15 YFIGDYGVGA--AKVLLA---ASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLH-GLSVAYLSGR 73 (551)
Q Consensus 15 yfigg~~~~~--~~~~~~---~~~~~~~~~~~~~g~~v~~Nl~yLg~----------~gv~~~~-GLrIa~lsG~ 73 (551)
+++.||||.. ...++. +.+. ..-.+||.||++-.. .-|++.. |+|||.++=.
T Consensus 88 a~tlGNHEFd~g~~~l~~l~~~~~~-------~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGlt 155 (282)
T cd07407 88 LLTIGNHELYNYEVADDEYEGFVPS-------WGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFL 155 (282)
T ss_pred EEeecccccCccccHHHHHHHHHhh-------cCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEe
Confidence 4677899983 112222 2211 124699999998642 2233555 9999999764
No 73
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=46.39 E-value=69 Score=32.47 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=52.6
Q ss_pred eEECCeEEEEEccccCCCCCcCCCCCHHHHHHHHH-hhcCC---CCccEEEeCCCchhccccccccccccCCCCCCCCCH
Q 008855 60 FTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEP---GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDS 135 (551)
Q Consensus 60 ~~~~GLrIa~lsG~~~~~~~~~~~~~~~dv~~l~~-~~~~~---~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~ 135 (551)
+...++++..|....... ......++++-|.. |+... .+.-|+++|.=+-........ . ........
T Consensus 113 f~~g~v~fi~Lds~~~~~---~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~-----~-~~~~~~~~ 183 (294)
T cd00839 113 FDVGPVHFVSLSTEVDFY---GDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDD-----C-IEGEKMRA 183 (294)
T ss_pred EeeCCEEEEEEecccccc---cCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCccccc-----c-chhHHHHH
Confidence 346789999887643211 12334555555654 33221 244578888544322111100 0 00112344
Q ss_pred HHHHHHHhcCCCcEEeccCCceeecccccc
Q 008855 136 TVSELVAEIKPRYHIAGSKGVFYAREPYSN 165 (551)
Q Consensus 136 ~i~~L~~~lkPrYhFa~~~~~fyEr~Py~~ 165 (551)
.+.+|+..-+....|+||.|.|--..|..+
T Consensus 184 ~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~ 213 (294)
T cd00839 184 ALEDLFYKYGVDLVLSGHVHAYERTCPVYN 213 (294)
T ss_pred HHHHHHHHhCCCEEEEccceeeEeechhhC
Confidence 667788888999999999887655556543
No 74
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=46.30 E-value=31 Score=35.03 Aligned_cols=53 Identities=9% Similarity=-0.169 Sum_probs=34.7
Q ss_pred EEEecCCCCChH--HHHHHhhcccccCCCccCCceeccCeEEec-------CCceeEEC-CeEEEEEccc
Q 008855 14 TYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLH-GLSVAYLSGR 73 (551)
Q Consensus 14 Tyfigg~~~~~~--~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg-------~~gv~~~~-GLrIa~lsG~ 73 (551)
.+++.|||+... ..+..+-. ...-.+|+.||++.+ ..-|++++ |+|||.++-.
T Consensus 85 d~~~lGNHe~d~g~~~l~~~~~-------~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~ 147 (277)
T cd07410 85 DAGTLGNHEFNYGLDYLDKVIK-------QANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLT 147 (277)
T ss_pred CEEeecccCcccCHHHHHHHHH-------hCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecC
Confidence 577788999852 22322211 013468999999875 12355789 9999999864
No 75
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=44.08 E-value=37 Score=33.86 Aligned_cols=91 Identities=9% Similarity=0.092 Sum_probs=45.9
Q ss_pred CCCCCeEEEEeccccCCCCC------CCHHHHHHHHHHHHHHHHHHHhc-CCceEEEE--ecCCCC-CeeEEEEEecCcc
Q 008855 367 PLVEDHVLVIPVEHVPNTIS------TSPECEKELGRFQNSLMMYYKNQ-GKEAVFFE--WLSKRG-THANLQAVPIPTS 436 (551)
Q Consensus 367 Pl~~GH~LIIP~~H~~s~~~------l~~e~~~Ei~~~~~~L~~~~~~~-g~~~v~~E--~~~~~~-~H~HihvVPvp~~ 436 (551)
+--+-|.|+||..-+.-+.+ -.++.|..-++....+.+.+.+- ....+... ...+|+ .|+|||+--+-
T Consensus 41 ~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~gRsQdQLHIHisClr-- 118 (222)
T PF02611_consen 41 RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQYGRSQDQLHIHISCLR-- 118 (222)
T ss_dssp SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-GGG-S--S--EEEEEB---
T ss_pred CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCccCccccceEeEhhhcC--
Confidence 34468999999999988765 25677888777776666666531 12233333 233444 58888887653
Q ss_pred hHHHHHHHHHHHHHHcCCceeeccC
Q 008855 437 KAAAVQDIFNLAAEKLGFKFLATKS 461 (551)
Q Consensus 437 ~~~~~~~~F~~~~~~~~~~~~~~~~ 461 (551)
.++...+.......+..|...+.
T Consensus 119 --p~v~~~L~~~~~~i~~~W~~lp~ 141 (222)
T PF02611_consen 119 --PDVRAQLDAHAPQIGSQWQPLPL 141 (222)
T ss_dssp --HHHHHHHHCCCCC--SS-EE-TT
T ss_pred --HHHHHHHHhhcCCCCCCCeECCc
Confidence 45555566555566777886554
No 76
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=42.88 E-value=42 Score=33.29 Aligned_cols=54 Identities=6% Similarity=-0.135 Sum_probs=35.0
Q ss_pred eEEEecCCCCChH---HHHHHhhcccccCCCccCCceeccCeEEecC---------CceeEECCeEEEEEcccc
Q 008855 13 PTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWLKG---------SGNFTLHGLSVAYLSGRQ 74 (551)
Q Consensus 13 pTyfigg~~~~~~---~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~---------~gv~~~~GLrIa~lsG~~ 74 (551)
..|++.|||+... .+.+.+.. ....+++.|+.+-+. .-|++.+|+|||.++-..
T Consensus 71 ~d~~~~GNHe~d~g~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~ 136 (252)
T cd00845 71 YDAVTIGNHEFDYGLDALAELYKD--------ANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTT 136 (252)
T ss_pred CCEEeeccccccccHHHHHHHHHh--------CCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEecc
Confidence 5788889999742 12222220 124578999987652 346678999999998653
No 77
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=42.72 E-value=41 Score=33.88 Aligned_cols=54 Identities=13% Similarity=-0.059 Sum_probs=34.6
Q ss_pred EEEecCCCCChH--HHHHHhhcccccCCCccCCceeccCeEEecC---------CceeEECCeEEEEEcccc
Q 008855 14 TYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG---------SGNFTLHGLSVAYLSGRQ 74 (551)
Q Consensus 14 Tyfigg~~~~~~--~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~---------~gv~~~~GLrIa~lsG~~ 74 (551)
.+.+.|||+... ..+.++-.. ..-.+|+.|+++-+. .-|++.+|+|||.++=..
T Consensus 73 d~~~~GNHefd~g~~~l~~~~~~-------~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~ 137 (257)
T cd07406 73 DLACFGNHEFDFGEDQLQKRLGE-------SKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVE 137 (257)
T ss_pred cEEeecccccccCHHHHHHHHhh-------CCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEec
Confidence 477789999742 223332211 234689999988553 244567999999998653
No 78
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=41.87 E-value=40 Score=33.88 Aligned_cols=53 Identities=15% Similarity=-0.066 Sum_probs=33.5
Q ss_pred EEEecCCCCChH--HHHHHhhcccccCCCccCCceeccCeEEec--C-----CceeEEC-CeEEEEEccc
Q 008855 14 TYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK--G-----SGNFTLH-GLSVAYLSGR 73 (551)
Q Consensus 14 Tyfigg~~~~~~--~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg--~-----~gv~~~~-GLrIa~lsG~ 73 (551)
.+++.|||+... ..+.++.. ...-.+||.|++... . .-|++.+ |+|||.++-.
T Consensus 72 d~~~~GNHefd~G~~~l~~~~~-------~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~ 134 (257)
T cd07408 72 DAVTPGNHEFDYGLDRLKELSK-------EADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLT 134 (257)
T ss_pred cEEccccccccCCHHHHHHHHh-------hCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeec
Confidence 466779999742 22222211 113468999999873 2 3344677 9999999864
No 79
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.70 E-value=44 Score=34.35 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=55.0
Q ss_pred CCcceEEEECCE---EEEEecC---CC--CCCCeEEEEec-cccCCCCCCCHHHHHHHHHHHHHHHHHHH-hcCCc----
Q 008855 347 VESHLIVSVGEY---YYCALPK---GP--LVEDHVLVIPV-EHVPNTISTSPECEKELGRFQNSLMMYYK-NQGKE---- 412 (551)
Q Consensus 347 ~~~hlIvs~g~~---~yl~l~k---gP--l~~GH~LIIP~-~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~-~~g~~---- 412 (551)
.+...||+++.. -|+.+|. .+ +..=|+|.|=. .-+.|+.+|..+-+.=+.+..+..+.++. .+|.+
T Consensus 157 aE~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dql 236 (310)
T KOG3969|consen 157 AEDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQL 236 (310)
T ss_pred ccccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhE
Confidence 344556665432 4677773 34 44556664443 44677889999988888888887776655 23432
Q ss_pred eEEEEecCCCC-CeeEEEEEecCcc
Q 008855 413 AVFFEWLSKRG-THANLQAVPIPTS 436 (551)
Q Consensus 413 ~v~~E~~~~~~-~H~HihvVPvp~~ 436 (551)
-+||- =+.+ .|+|+|++++-.+
T Consensus 237 rmf~H--YqPSyYHlHVHi~nik~~ 259 (310)
T KOG3969|consen 237 RMFFH--YQPSYYHLHVHIVNIKHD 259 (310)
T ss_pred EEEEE--ecCceEEEEEEEEeccCC
Confidence 12222 1223 6999999998655
No 80
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=41.26 E-value=88 Score=28.79 Aligned_cols=84 Identities=19% Similarity=0.316 Sum_probs=44.9
Q ss_pred ccCeEEecCCceeEECCeEEEEEccccCC-----CCC-----------c---CC-CCCHHHHHHHHHhhcCCCCccEEEe
Q 008855 48 TDNLFWLKGSGNFTLHGLSVAYLSGRQSS-----EGQ-----------Q---FG-TYSQDDVDALRALAEEPGIVDLFLT 107 (551)
Q Consensus 48 ~~Nl~yLg~~gv~~~~GLrIa~lsG~~~~-----~~~-----------~---~~-~~~~~dv~~l~~~~~~~~~vDIllT 107 (551)
.+++.++..-+.+++.|++|-.+...... ... . .+ .....+.+.+..+ +.+||++.
T Consensus 59 ~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~~~~~~~~~----~~vDvl~~ 134 (163)
T PF13483_consen 59 DRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPPDDEQLKQL----GKVDVLFL 134 (163)
T ss_dssp HTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S---HHHHHHH-----S-SEEEE
T ss_pred ccccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCCCHHHHhcc----cCCCEEEe
Confidence 55888888878888888888877764310 000 0 00 1111233344444 57999986
Q ss_pred CCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEec
Q 008855 108 NEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAG 152 (551)
Q Consensus 108 ~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~ 152 (551)
.-=. . ...+.....++++.||||+-.-.
T Consensus 135 p~~g-------~----------~~~~~~~a~~~~~~l~pk~viP~ 162 (163)
T PF13483_consen 135 PVGG-------P----------FTMGPEEAAELAERLKPKLVIPM 162 (163)
T ss_dssp E--T-------T----------TS--HHHHHHHHHHCT-SEEEEE
T ss_pred cCCC-------C----------cccCHHHHHHHHHHcCCCEEEeC
Confidence 4211 0 13567788999999999987643
No 81
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=36.04 E-value=60 Score=33.35 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=65.4
Q ss_pred ceeccCeEEec-------CCceeEECCeEEEEEccccCCCCC-------cCCCCCHHHHHHHHHhh-cC-CCCccEEE--
Q 008855 45 FKVTDNLFWLK-------GSGNFTLHGLSVAYLSGRQSSEGQ-------QFGTYSQDDVDALRALA-EE-PGIVDLFL-- 106 (551)
Q Consensus 45 ~~v~~Nl~yLg-------~~gv~~~~GLrIa~lsG~~~~~~~-------~~~~~~~~dv~~l~~~~-~~-~~~vDIll-- 106 (551)
.+||.|+++.. ..-|++.+|+|||.++=....... .-..|. +-+++++... .. ..++||++
T Consensus 120 p~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl~~~~~~~~~~~~~~~g~~f~-d~~e~~~~~v~~lr~~~~D~IIvL 198 (288)
T cd07412 120 PYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGAVTKDTPNLVSPDGVAGLEFT-DEVEAINAVAPELKAGGVDAIVVL 198 (288)
T ss_pred CEEEEeEEecCCCCcccCCEEEEEECCEEEEEEeecCCCccceeccccccCceEc-CHHHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999854 234556899999999864221100 011232 2234444321 11 14577655
Q ss_pred eCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCC--CcEEeccCCceeeccccccCCCCceeEEEeccCCCCcc
Q 008855 107 TNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKP--RYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 184 (551)
Q Consensus 107 T~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkP--rYhFa~~~~~fyEr~Py~~~~~~~~TRFi~L~~~g~~~ 184 (551)
+| |. +..... +.. . ........+++..+-| .--++||.|..+.. |.. ...-|..+.=+..|
T Consensus 199 ~H-~G--~~~~~~----~~~-~--~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~-~~~---~~~~~~v~q~g~~g--- 261 (288)
T cd07412 199 AH-EG--GSTKGG----DDT-C--SAASGPIADIVNRLDPDVDVVFAGHTHQAYNC-TVP---AGNPRLVTQAGSYG--- 261 (288)
T ss_pred eC-CC--CCCCCC----Ccc-c--cccChhHHHHHhhcCCCCCEEEeCccCccccc-ccc---CcCCEEEEecChhh---
Confidence 55 22 211000 000 0 0111234667777766 46678888877753 211 11234444444443
Q ss_pred cceEEEEecCCCC
Q 008855 185 KQKFIHALSPTPA 197 (551)
Q Consensus 185 K~kwlyAf~i~p~ 197 (551)
+++-.+.|...
T Consensus 262 --~~vg~i~l~~~ 272 (288)
T cd07412 262 --KAVADVDLTID 272 (288)
T ss_pred --ceeEEEEEEEE
Confidence 36666666543
No 82
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=34.58 E-value=1e+02 Score=30.87 Aligned_cols=148 Identities=9% Similarity=0.023 Sum_probs=73.0
Q ss_pred CCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEEC------CeEEEEEccccCCCC-----
Q 008855 10 IPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH------GLSVAYLSGRQSSEG----- 78 (551)
Q Consensus 10 ~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~~------GLrIa~lsG~~~~~~----- 78 (551)
..+|+|.+.|||+.....-..+.-. .....+.+..++-+|- +... +++|..|.-......
T Consensus 69 ~~~P~~~v~GNHD~~~~~~~~~~~~----~~~~~~~~~~~~~~y~-----~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~ 139 (277)
T cd07378 69 LQVPWYLVLGNHDYSGNVSAQIDYT----KRPNSPRWTMPAYYYR-----VSFPFPSSDTTVEFIMIDTVPLCGNSDDIA 139 (277)
T ss_pred hcCCeEEecCCcccCCCchheeehh----ccCCCCCccCcchheE-----EEeecCCCCCEEEEEEEeChhHcCcccccc
Confidence 5789999999998752211110000 0000112233433221 1222 688888875432111
Q ss_pred ----CcCCCCCHHHHHHHHH-hhcCCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEecc
Q 008855 79 ----QQFGTYSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGS 153 (551)
Q Consensus 79 ----~~~~~~~~~dv~~l~~-~~~~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~ 153 (551)
........++++-|.. |+......=|+++|.=|-........ ..-...+.+|+.+-+...+|+||
T Consensus 140 ~~~~~~~~~~~~~Q~~wL~~~L~~~~~~~~iv~~H~P~~~~~~~~~~----------~~~~~~l~~l~~~~~v~~vl~GH 209 (277)
T cd07378 140 SPYGPPNGKLAEEQLAWLEKTLAASTADWKIVVGHHPIYSSGEHGPT----------SCLVDRLLPLLKKYKVDAYLSGH 209 (277)
T ss_pred ccccCcchhhHHHHHHHHHHHHHhcCCCeEEEEeCccceeCCCCCCc----------HHHHHHHHHHHHHcCCCEEEeCC
Confidence 1112334555555554 33333345588888754332111100 01123566677777789999999
Q ss_pred CCceeeccccccCCCCceeEEEeccCCC
Q 008855 154 KGVFYAREPYSNVDAVHVTRFLGLAPVG 181 (551)
Q Consensus 154 ~~~fyEr~Py~~~~~~~~TRFi~L~~~g 181 (551)
.|.+....+ ...-|++|..+.-+
T Consensus 210 ~H~~~~~~~-----~~~~~~~i~~G~~~ 232 (277)
T cd07378 210 DHNLQHIKD-----DGSGTSFVVSGAGS 232 (277)
T ss_pred cccceeeec-----CCCCcEEEEeCCCc
Confidence 887553221 12347777776443
No 83
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=33.53 E-value=68 Score=32.38 Aligned_cols=55 Identities=4% Similarity=-0.130 Sum_probs=32.9
Q ss_pred ceEEEecCCCCChH--HHHHHhhcccccCCCccCCceeccCeEEecC-------CceeEECCeEEEEEccc
Q 008855 12 IPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTLHGLSVAYLSGR 73 (551)
Q Consensus 12 ipTyfigg~~~~~~--~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~-------~gv~~~~GLrIa~lsG~ 73 (551)
+..+++.|||+... ..+..+-.. ..-.+||.|+++-+. .-|++.+|+|||.++-.
T Consensus 83 ~g~da~~GNHefd~g~~~l~~~~~~-------~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~ 146 (264)
T cd07411 83 LGVDAMVGHWEFTYGPERVRELFGR-------LNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQT 146 (264)
T ss_pred hCCeEEecccccccCHHHHHHHHhh-------CCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEec
Confidence 34445559999752 122222110 124589999987642 22445799999999865
No 84
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=32.80 E-value=96 Score=30.78 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=35.7
Q ss_pred cCCceEEEecCCCCChHHHH------HHhhcccccCCCccCCcee-ccCeEEecCCceeEECCeEEEEEccc
Q 008855 9 EIPIPTYFIGDYGVGAAKVL------LAASKNSANQGFKMDGFKV-TDNLFWLKGSGNFTLHGLSVAYLSGR 73 (551)
Q Consensus 9 ~~PipTyfigg~~~~~~~~~------~~~~~~~~~~~~~~~g~~v-~~Nl~yLg~~gv~~~~GLrIa~lsG~ 73 (551)
...+|+|++.|||......+ ..+. ..+ ..|+.++-....++++|.+|...+|.
T Consensus 79 ~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~------------~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~ 138 (243)
T cd07386 79 PSHIKIIIIPGNHDAVRQAEPQPALPEEIR------------KLFLPGNVEFVSNPALVKIHGVDVLIYHGR 138 (243)
T ss_pred ccCCeEEEeCCCCCcccccCCCCCccHHHH------------hhcCCCceEEeCCCCEEEECCEEEEEECCC
Confidence 34689999999998642111 1110 011 36888887766778899999988885
No 85
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=32.76 E-value=1.1e+02 Score=34.06 Aligned_cols=155 Identities=13% Similarity=0.018 Sum_probs=76.6
Q ss_pred EEEecCCCCChHHH--HHHhhcccccCCCccCCceeccCeEEe-c-------CCceeEECCeEEEEEccc--cCCCCCc-
Q 008855 14 TYFIGDYGVGAAKV--LLAASKNSANQGFKMDGFKVTDNLFWL-K-------GSGNFTLHGLSVAYLSGR--QSSEGQQ- 80 (551)
Q Consensus 14 Tyfigg~~~~~~~~--~~~~~~~~~~~~~~~~g~~v~~Nl~yL-g-------~~gv~~~~GLrIa~lsG~--~~~~~~~- 80 (551)
-+.+.||||..... +.++... ..-.+||.|++.= + ..-|++..|+|||+++=. ....-..
T Consensus 105 Da~tiGNHEFd~g~~~l~~~~~~-------~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~ 177 (517)
T COG0737 105 DAMTLGNHEFDYGLEALARLLDE-------AKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKP 177 (517)
T ss_pred cEEeecccccccCHHHHHHHHhc-------cCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccc
Confidence 35677899986442 4444321 1234999999988 2 223456789999999854 2111110
Q ss_pred ----CCCCCHHHHHHHHHhh-cCC-CCccE--EEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEec
Q 008855 81 ----FGTYSQDDVDALRALA-EEP-GIVDL--FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAG 152 (551)
Q Consensus 81 ----~~~~~~~dv~~l~~~~-~~~-~~vDI--llT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~ 152 (551)
-..|+ +.+++++... ... .++|+ +|||-=-..-...... .+.. ++... ....=-|+|
T Consensus 178 ~~~~~~~f~-d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~--~~~~----------~~~~~--~~iD~i~~G 242 (517)
T COG0737 178 NAIEGVTFR-DPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASE--VPGD----------VDVAV--PGIDLIIGG 242 (517)
T ss_pred cccCCcEEc-CHHHHHHHHHHHHHhcCCCEEEEEeccCcCcccccccc--cccc----------ccccc--cCcceEecc
Confidence 12344 4555555432 111 12775 5666422211111000 0101 00000 226777899
Q ss_pred cCCceeeccccccCCCCceeEEEeccCCCCcccceEEEEecCCCC
Q 008855 153 SKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPA 197 (551)
Q Consensus 153 ~~~~fyEr~Py~~~~~~~~TRFi~L~~~g~~~K~kwlyAf~i~p~ 197 (551)
|.|..|+..-+. ....-|--+.-+.+|. ++.-++|+-.
T Consensus 243 H~H~~~~~~~~~--~~~~~t~ivqag~~gk-----~vG~~di~~d 280 (517)
T COG0737 243 HSHTVFPGGDKP--GTVNGTPIVQAGEYGK-----YVGVLDITFD 280 (517)
T ss_pred CCcccccCCccc--CccCCEEEEccChhhC-----ceeEEEEEEc
Confidence 988777654311 1122345555555543 6666666543
No 86
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=32.26 E-value=18 Score=37.80 Aligned_cols=55 Identities=31% Similarity=0.760 Sum_probs=37.3
Q ss_pred cceeeeccCCCCCCCc-ccccCCchhh--hhhhcccchhhhhcCCcCCCCCccccCCCCCC
Q 008855 262 MCFKFIYSGSCPRGEK-CNFRHDTDAR--EQCLRGVCLDFIIKGKCEKGPECSYKHSLQND 319 (551)
Q Consensus 262 ~c~~~~~~g~~~~g~~-c~~~~~~~~~--~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~~ 319 (551)
+|++|. -+.|.+|+. |+|.|-+.+. +..---.|.|++ +|+|.+- +|++.|..+..
T Consensus 39 VCReF~-rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~-kgrCsR~-nCkylHpp~hl 96 (331)
T KOG2494|consen 39 VCREFL-RNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQ-KGRCSRE-NCKYLHPPQHL 96 (331)
T ss_pred HHHHHH-hccccCCCccccccCCCCCCCccCCeEEEEeccc-cCccCcc-cceecCCChhh
Confidence 888775 578999999 9999987432 233234588876 4455432 38888887753
No 87
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=30.99 E-value=80 Score=32.29 Aligned_cols=53 Identities=11% Similarity=-0.098 Sum_probs=32.3
Q ss_pred EEecCCCCChHH--HHHHhhcccccCCCccCCceeccCeEEecC----------CceeEECCeEEEEEcccc
Q 008855 15 YFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLHGLSVAYLSGRQ 74 (551)
Q Consensus 15 yfigg~~~~~~~--~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~----------~gv~~~~GLrIa~lsG~~ 74 (551)
+++.|||+.... .+.++-.. ..-.+||.|++.-.. .-|++.+|+|||.++=..
T Consensus 85 ~~~lGNHefd~G~~~l~~~~~~-------~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~ 149 (281)
T cd07409 85 AMTLGNHEFDDGVEGLAPFLNN-------LKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTT 149 (281)
T ss_pred EEEeccccccCCHHHHHHHHHh-------CCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEec
Confidence 445579998521 12222110 134689999887542 245568999999998643
No 88
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=30.53 E-value=1.7e+02 Score=28.27 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHH-hcCC-ceEEEE-ecCCCCCeeEEEEEecCcch
Q 008855 393 KELGRFQNSLMMYYK-NQGK-EAVFFE-WLSKRGTHANLQAVPIPTSK 437 (551)
Q Consensus 393 ~Ei~~~~~~L~~~~~-~~g~-~~v~~E-~~~~~~~H~HihvVPvp~~~ 437 (551)
+++.+|.+.....|. .+|. +++..- ..--.++|+|+-+||+-.+.
T Consensus 98 e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~vP~~~~~ 145 (196)
T PF01076_consen 98 EQQKRWFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVVPIDEDG 145 (196)
T ss_pred HHHHHHHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEeeccccc
Confidence 345556555555555 4563 343333 12223799999999996653
No 89
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=29.46 E-value=91 Score=31.99 Aligned_cols=52 Identities=17% Similarity=0.030 Sum_probs=31.5
Q ss_pred EEecCCCCChHH--HHHHhhcccccCCCccCCceeccCeEEec------CCceeEECCeEEEEEccc
Q 008855 15 YFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTLHGLSVAYLSGR 73 (551)
Q Consensus 15 yfigg~~~~~~~--~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg------~~gv~~~~GLrIa~lsG~ 73 (551)
..+.||||.... .+.++... ..-.++|.|+++-. ..-|++.+|+|||.++-.
T Consensus 78 a~~~GNHEfD~G~~~L~~~~~~-------~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t 137 (285)
T cd07405 78 AMAVGNHEFDNPLEVLRQQMKW-------ANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLT 137 (285)
T ss_pred EEeecccccccCHHHHHHHHhh-------CCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEec
Confidence 345589987522 22222211 12358999999862 123446799999999764
No 90
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.83 E-value=68 Score=33.30 Aligned_cols=92 Identities=18% Similarity=0.409 Sum_probs=51.3
Q ss_pred cceeeeccCCCCCCCcccccCCchhhhhhhcccchhhhhcCCcCCCCCccccCCCCCCccccccCCcccccCCCCCCccc
Q 008855 262 MCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFC 341 (551)
Q Consensus 262 ~c~~~~~~g~~~~g~~c~~~~~~~~~~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~~~~~~~~~~~~~~~~~~~~C~FC 341 (551)
+|+++..+|-|--|+.|+|+|+-.-=.. +=.+++++-.. .+....... -....+..|.-|
T Consensus 188 icKdykeTgycg~gdSckFlh~r~DyK~---GWqi~~e~d~~--------------ke~~~~~~~---D~~~~Pf~c~ic 247 (313)
T KOG1813|consen 188 ICKDYKETGYCGYGDSCKFLHDRSDYKA---GWQIEFEWDSA--------------KEKKRVKIE---DIELLPFKCFIC 247 (313)
T ss_pred hhhhhHhhCcccccchhhhhhhhhhccc---cceeehhhhcc--------------ccccceecC---CcccCCcccccc
Confidence 8999999999999999999999631100 00011111110 000001100 023457789999
Q ss_pred CCCCCCCcceEEEECCEEEEEec-CCCCCCCe-EEEE
Q 008855 342 LSSPSVESHLIVSVGEYYYCALP-KGPLVEDH-VLVI 376 (551)
Q Consensus 342 ~~~~~~~~hlIvs~g~~~yl~l~-kgPl~~GH-~LII 376 (551)
.-.- ...||+.-.|.|+-.. ..|+..|- |.|.
T Consensus 248 r~~f---~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC 281 (313)
T KOG1813|consen 248 RKYF---YRPVVTKCGHYFCEVCALKPYQKGEKCYVC 281 (313)
T ss_pred cccc---ccchhhcCCceeehhhhccccccCCcceec
Confidence 6431 3447777777777544 56777753 4443
No 91
>KOG4138 consensus Unchracterized conserved protein (estrogen up-regulated protein E2IG2 in human) [General function prediction only]
Probab=28.26 E-value=18 Score=30.50 Aligned_cols=21 Identities=33% Similarity=0.865 Sum_probs=15.7
Q ss_pred ccccccccCCChHHHHHHHHHHHhcCcc
Q 008855 519 DKADWRNCMLGKEEETKMVEDFKKRFEA 546 (551)
Q Consensus 519 ~r~~Wr~c~~~~eeE~~~~~~Fk~~f~~ 546 (551)
+--|||+|+ ..+++||+-|++
T Consensus 56 ~t~DWRqC~-------~qm~~FrkCwek 76 (96)
T KOG4138|consen 56 QTQDWRQCQ-------PQMQAFRKCWEK 76 (96)
T ss_pred hhccHHHHH-------HHHHHHHHHHHH
Confidence 346899996 347789988764
No 92
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=28.00 E-value=24 Score=34.40 Aligned_cols=24 Identities=33% Similarity=0.866 Sum_probs=22.6
Q ss_pred cceeeeccCCCCCCCcccccCCch
Q 008855 262 MCFKFIYSGSCPRGEKCNFRHDTD 285 (551)
Q Consensus 262 ~c~~~~~~g~~~~g~~c~~~~~~~ 285 (551)
+|++|..+|-|-=|+.|+|.|+..
T Consensus 143 VCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 143 VCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred cccchhhcccccCCchhhhhhhhh
Confidence 999999999999999999999863
No 93
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=22.97 E-value=42 Score=35.06 Aligned_cols=29 Identities=34% Similarity=0.745 Sum_probs=25.0
Q ss_pred CCCcceeeeccCCCCCCCcccccCCchhh
Q 008855 259 GDKMCFKFIYSGSCPRGEKCNFRHDTDAR 287 (551)
Q Consensus 259 ~~~~c~~~~~~g~~~~g~~c~~~~~~~~~ 287 (551)
+...|..|+.+|.|+-|..|+|.|.....
T Consensus 176 kt~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 176 KTKLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred CCcCCCccccCCCCCCCCcCeecCCCccc
Confidence 34589999999999999999999997543
No 94
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=22.96 E-value=1.1e+02 Score=32.12 Aligned_cols=58 Identities=10% Similarity=-0.078 Sum_probs=31.9
Q ss_pred EEecCCCCChH--HHHHHhhcccccCCCccCCceeccCeEEecC-----------------------CceeEECCeEEEE
Q 008855 15 YFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG-----------------------SGNFTLHGLSVAY 69 (551)
Q Consensus 15 yfigg~~~~~~--~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~-----------------------~gv~~~~GLrIa~ 69 (551)
+.+.||||... ..+.++-+. .+......-.+||.||++-+. .-|++.+|+|||.
T Consensus 82 a~tlGNHEFD~G~~~L~~~~~~-~~~~~~a~fp~l~aNv~~~~~~~~~~~~~~~~~~~~~~~~~~~py~I~e~~G~kIGv 160 (313)
T cd08162 82 AIALGNHEFDLGTDELADLIRP-SAAGGGAAFPYLSANLDFSGDANLAGLATADGQQAAAIAGKIAKSTVVEVGGEKIGV 160 (313)
T ss_pred EEeccccccccCHHHHHHHHHh-hcccccCCCCEEEecccccCCcccccccccccccccccccccCCeEEEEECCEEEEE
Confidence 35789999752 223322211 000000013589999976432 2344679999999
Q ss_pred Eccc
Q 008855 70 LSGR 73 (551)
Q Consensus 70 lsG~ 73 (551)
++-.
T Consensus 161 iGlt 164 (313)
T cd08162 161 VGAT 164 (313)
T ss_pred EEec
Confidence 9864
No 95
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=22.82 E-value=1.2e+02 Score=34.13 Aligned_cols=52 Identities=15% Similarity=0.003 Sum_probs=32.6
Q ss_pred EEecCCCCChHH--HHHHhhcccccCCCccCCceeccCeEEec-------CCceeEECCeEEEEEccc
Q 008855 15 YFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGR 73 (551)
Q Consensus 15 yfigg~~~~~~~--~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg-------~~gv~~~~GLrIa~lsG~ 73 (551)
+++.||||.... .|.++... ..-.+||.|+++-. ..-|++.+|+|||+++=.
T Consensus 112 a~tlGNHEFD~G~~~L~~~~~~-------a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~ 172 (551)
T PRK09558 112 AMAVGNHEFDNPLSVLRKQEKW-------AKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLT 172 (551)
T ss_pred EEcccccccCcCHHHHHHhhcc-------CCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEe
Confidence 456699998532 23333211 13469999998753 123345789999999864
No 96
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=21.97 E-value=63 Score=36.10 Aligned_cols=48 Identities=29% Similarity=0.595 Sum_probs=36.9
Q ss_pred CCCCCCcccccCC-chhh------hhhhcccchhhhhcCCcCCCCCccccCCCCCC
Q 008855 271 SCPRGEKCNFRHD-TDAR------EQCLRGVCLDFIIKGKCEKGPECSYKHSLQND 319 (551)
Q Consensus 271 ~~~~g~~c~~~~~-~~~~------~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~~ 319 (551)
-|-+++.|.|.|- ..++ =.|-+-+|++|.. |.|.+|..|-+.|-.-.+
T Consensus 208 ~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvfEc 262 (528)
T KOG1595|consen 208 RSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVFEC 262 (528)
T ss_pred cCCCcccCCccCCCcccccCCcccccccCccCccccc-CCCCCCCccccccceehh
Confidence 4778999999993 2222 3566678999986 999999999999987643
No 97
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=21.93 E-value=1.4e+02 Score=29.30 Aligned_cols=38 Identities=8% Similarity=0.060 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCCCCCeeEEEEEe
Q 008855 393 KELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVP 432 (551)
Q Consensus 393 ~Ei~~~~~~L~~~~~~~g~~~v~~E~~~~~~~H~HihvVP 432 (551)
+.|..+...+.+-+...++.+++.. -....|.|+|||=
T Consensus 72 e~~~~~~~~~~~~~~~~~~~~v~~~--H~D~~h~H~Hivi 109 (242)
T PF03432_consen 72 EQAHEIAREFAEEMGPGNHQYVVVV--HTDTDHPHVHIVI 109 (242)
T ss_pred HHHHHHHHHHHHHcCCCCcceEEEE--CCCcCeeeeeEEE
Confidence 4444555555444433345555443 2235688888773
No 98
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=21.53 E-value=1.4e+02 Score=32.67 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.4
Q ss_pred CcccCCceEEEecCCCCChH
Q 008855 6 GRSEIPIPTYFIGDYGVGAA 25 (551)
Q Consensus 6 G~~~~PipTyfigg~~~~~~ 25 (551)
....+.+|+|.|-|||..+.
T Consensus 105 ~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 105 PNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccccCCCCEEEEcCCCCCcc
Confidence 33457899999999999875
Done!