Query 008856
Match_columns 551
No_of_seqs 213 out of 2785
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 17:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.6E-32 1.9E-36 305.0 24.4 462 5-524 86-582 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-31 2.2E-36 304.5 24.6 456 12-525 69-559 (968)
3 PLN03210 Resistant to P. syrin 99.9 1.7E-23 3.6E-28 237.9 21.9 312 89-482 590-909 (1153)
4 PLN03210 Resistant to P. syrin 99.9 3.8E-23 8.3E-28 234.9 22.0 342 6-418 552-907 (1153)
5 KOG4194 Membrane glycoprotein 99.9 9.3E-25 2E-29 213.1 6.0 380 59-519 50-445 (873)
6 KOG4194 Membrane glycoprotein 99.9 4.5E-24 9.8E-29 208.3 1.9 335 60-442 78-426 (873)
7 KOG0618 Serine/threonine phosp 99.9 2.6E-24 5.5E-29 220.8 -2.9 399 56-521 41-460 (1081)
8 KOG0472 Leucine-rich repeat pr 99.8 1.4E-24 3.1E-29 203.0 -13.8 376 8-442 64-468 (565)
9 KOG0444 Cytoskeletal regulator 99.8 3E-23 6.6E-28 204.0 -5.5 337 58-479 30-375 (1255)
10 KOG0444 Cytoskeletal regulator 99.8 7.9E-23 1.7E-27 201.1 -4.4 364 59-527 6-376 (1255)
11 KOG0618 Serine/threonine phosp 99.8 9.3E-23 2E-27 209.4 -4.5 433 14-525 23-488 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 1.2E-23 2.6E-28 196.8 -11.0 398 58-524 66-539 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 3.4E-14 7.4E-19 151.1 15.2 173 288-501 283-456 (788)
14 PRK15387 E3 ubiquitin-protein 99.5 8.3E-14 1.8E-18 148.2 14.2 254 194-524 201-456 (788)
15 PRK15370 E3 ubiquitin-protein 99.4 3.9E-13 8.5E-18 143.9 10.2 244 194-501 178-426 (754)
16 PRK15370 E3 ubiquitin-protein 99.4 7.1E-13 1.5E-17 141.9 10.6 244 217-525 178-427 (754)
17 KOG4341 F-box protein containi 99.4 1.6E-14 3.4E-19 137.1 -2.4 302 34-390 140-459 (483)
18 KOG4341 F-box protein containi 99.3 4E-14 8.7E-19 134.4 -3.4 300 61-411 139-459 (483)
19 KOG4237 Extracellular matrix p 99.3 6.1E-14 1.3E-18 132.1 -3.3 257 51-344 82-355 (498)
20 KOG0617 Ras suppressor protein 99.2 3.3E-13 7.1E-18 112.8 -5.6 157 334-508 32-190 (264)
21 KOG4237 Extracellular matrix p 99.1 8.7E-12 1.9E-16 117.8 -1.2 220 289-524 93-357 (498)
22 cd00116 LRR_RI Leucine-rich re 99.0 2.9E-11 6.3E-16 119.7 -0.2 130 360-500 138-288 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.0 1.7E-10 3.6E-15 125.9 5.6 106 59-177 544-651 (889)
24 cd00116 LRR_RI Leucine-rich re 99.0 1.2E-10 2.5E-15 115.3 2.4 57 288-345 251-317 (319)
25 KOG4658 Apoptotic ATPase [Sign 99.0 4.2E-10 9E-15 122.8 6.4 128 59-203 522-651 (889)
26 KOG0617 Ras suppressor protein 99.0 1.6E-11 3.5E-16 102.8 -3.8 146 289-442 35-183 (264)
27 PRK15386 type III secretion pr 98.7 7.5E-08 1.6E-12 94.6 10.7 94 306-413 47-141 (426)
28 KOG3207 Beta-tubulin folding c 98.7 3.5E-09 7.5E-14 101.8 -0.2 210 31-265 120-339 (505)
29 KOG3207 Beta-tubulin folding c 98.6 5.2E-09 1.1E-13 100.6 -0.6 189 58-266 119-315 (505)
30 KOG2120 SCF ubiquitin ligase, 98.6 2.2E-09 4.8E-14 98.1 -4.3 152 288-443 186-349 (419)
31 KOG2120 SCF ubiquitin ligase, 98.5 6E-09 1.3E-13 95.3 -2.7 62 118-179 207-271 (419)
32 PF14580 LRR_9: Leucine-rich r 98.5 6.2E-08 1.3E-12 84.9 3.3 126 311-442 19-150 (175)
33 KOG1259 Nischarin, modulator o 98.5 8.7E-08 1.9E-12 87.9 3.8 128 360-507 285-415 (490)
34 KOG1259 Nischarin, modulator o 98.5 4.3E-08 9.3E-13 89.9 0.8 134 331-483 280-415 (490)
35 PF14580 LRR_9: Leucine-rich r 98.4 1.2E-07 2.7E-12 83.0 3.0 102 59-179 18-124 (175)
36 KOG0532 Leucine-rich repeat (L 98.4 1.2E-08 2.7E-13 101.2 -5.3 167 290-501 78-245 (722)
37 PRK15386 type III secretion pr 98.3 3.2E-06 6.9E-11 83.4 9.7 71 86-176 50-120 (426)
38 COG4886 Leucine-rich repeat (L 98.3 7.1E-07 1.5E-11 91.0 4.3 170 310-500 115-287 (394)
39 KOG1909 Ran GTPase-activating 98.2 9.9E-07 2.2E-11 83.0 3.4 58 288-345 31-102 (382)
40 COG4886 Leucine-rich repeat (L 98.1 2.3E-06 4.9E-11 87.3 5.0 189 315-524 97-288 (394)
41 PF13855 LRR_8: Leucine rich r 98.1 5.9E-06 1.3E-10 59.2 4.5 59 60-131 1-59 (61)
42 KOG1947 Leucine rich repeat pr 98.0 5.2E-07 1.1E-11 94.7 -1.9 66 86-158 241-308 (482)
43 KOG0532 Leucine-rich repeat (L 98.0 3E-07 6.4E-12 91.6 -4.2 187 317-525 56-246 (722)
44 KOG1909 Ran GTPase-activating 97.9 5.3E-06 1.2E-10 78.2 2.7 168 5-179 85-281 (382)
45 KOG0531 Protein phosphatase 1, 97.9 2.3E-06 5E-11 87.5 -0.5 175 307-506 91-270 (414)
46 KOG1947 Leucine rich repeat pr 97.9 2.3E-06 5E-11 89.8 -1.0 115 86-207 186-308 (482)
47 PF13855 LRR_8: Leucine rich r 97.9 2E-05 4.3E-10 56.4 4.2 57 288-345 2-59 (61)
48 KOG1859 Leucine-rich repeat pr 97.8 9E-07 1.9E-11 90.7 -4.6 123 289-418 166-293 (1096)
49 KOG3665 ZYG-1-like serine/thre 97.7 2.8E-05 6E-10 83.4 3.7 108 60-179 122-231 (699)
50 KOG0531 Protein phosphatase 1, 97.5 1.5E-05 3.3E-10 81.5 -1.0 192 309-523 70-265 (414)
51 KOG3665 ZYG-1-like serine/thre 97.4 0.0001 2.2E-09 79.1 3.1 132 86-226 120-259 (699)
52 KOG1859 Leucine-rich repeat pr 97.3 9.1E-06 2E-10 83.6 -5.4 102 403-524 186-290 (1096)
53 PLN03150 hypothetical protein; 97.3 0.00065 1.4E-08 73.1 7.7 108 89-207 419-528 (623)
54 KOG2982 Uncharacterized conser 97.2 0.00067 1.5E-08 62.9 6.3 93 404-508 173-267 (418)
55 PF12799 LRR_4: Leucine Rich r 97.2 0.00037 7.9E-09 45.8 3.0 40 466-507 1-40 (44)
56 PF12799 LRR_4: Leucine Rich r 97.1 0.00059 1.3E-08 44.8 3.5 32 122-154 2-33 (44)
57 PLN03150 hypothetical protein; 97.1 0.00069 1.5E-08 72.9 6.0 105 313-417 420-528 (623)
58 KOG2982 Uncharacterized conser 97.0 0.00038 8.3E-09 64.5 2.6 179 12-206 71-261 (418)
59 KOG1644 U2-associated snRNP A' 96.8 0.0026 5.6E-08 55.9 5.7 104 403-524 41-151 (233)
60 KOG3864 Uncharacterized conser 96.1 0.0012 2.5E-08 58.0 -0.5 87 61-158 102-189 (221)
61 KOG1644 U2-associated snRNP A' 96.0 0.0088 1.9E-07 52.6 4.3 78 360-442 43-123 (233)
62 COG5238 RNA1 Ran GTPase-activa 95.9 0.0025 5.5E-08 58.4 0.4 40 403-442 91-130 (388)
63 COG5238 RNA1 Ran GTPase-activa 95.7 0.006 1.3E-07 56.1 2.1 152 288-442 31-224 (388)
64 KOG4579 Leucine-rich repeat (L 95.7 0.0015 3.2E-08 53.6 -1.5 90 405-508 28-117 (177)
65 KOG2123 Uncharacterized conser 95.4 0.001 2.3E-08 61.1 -3.7 80 33-132 20-99 (388)
66 KOG2739 Leucine-rich acidic nu 95.2 0.012 2.6E-07 54.0 2.3 57 384-442 44-101 (260)
67 KOG4579 Leucine-rich repeat (L 95.1 0.0021 4.5E-08 52.8 -2.6 108 289-399 29-140 (177)
68 PF13306 LRR_5: Leucine rich r 95.0 0.13 2.8E-06 42.8 8.2 106 52-177 4-112 (129)
69 KOG2739 Leucine-rich acidic nu 94.9 0.011 2.4E-07 54.3 1.1 84 58-155 41-126 (260)
70 KOG2123 Uncharacterized conser 94.8 0.0024 5.1E-08 58.9 -3.3 61 143-205 39-99 (388)
71 KOG3864 Uncharacterized conser 94.1 0.01 2.2E-07 52.3 -0.9 77 360-441 102-185 (221)
72 PF13306 LRR_5: Leucine rich r 93.9 0.27 5.9E-06 40.8 7.6 84 53-154 28-112 (129)
73 PF00560 LRR_1: Leucine Rich R 92.2 0.1 2.2E-06 28.3 1.6 21 360-381 1-21 (22)
74 PF13504 LRR_7: Leucine rich r 91.6 0.15 3.2E-06 25.6 1.7 17 490-507 1-17 (17)
75 PF00560 LRR_1: Leucine Rich R 91.1 0.14 3.1E-06 27.7 1.4 9 90-98 2-10 (22)
76 smart00367 LRR_CC Leucine-rich 80.8 1 2.2E-05 25.4 1.3 16 88-103 2-17 (26)
77 KOG3763 mRNA export factor TAP 74.1 1.8 3.9E-05 44.4 1.7 71 85-162 215-287 (585)
78 smart00369 LRR_TYP Leucine-ric 63.5 5.1 0.00011 22.4 1.4 19 88-107 2-20 (26)
79 smart00370 LRR Leucine-rich re 63.5 5.1 0.00011 22.4 1.4 19 88-107 2-20 (26)
80 smart00364 LRR_BAC Leucine-ric 53.9 8.3 0.00018 21.8 1.1 18 490-508 2-19 (26)
81 KOG4308 LRR-containing protein 43.0 0.67 1.4E-05 48.0 -7.8 68 2-69 105-181 (478)
82 PF13516 LRR_6: Leucine Rich r 39.0 26 0.00057 19.0 1.7 16 288-303 3-18 (24)
83 smart00365 LRR_SD22 Leucine-ri 35.6 33 0.00072 19.4 1.8 16 490-506 2-17 (26)
84 PF07725 LRR_3: Leucine Rich R 33.8 32 0.00069 18.2 1.4 17 62-79 2-18 (20)
85 KOG3763 mRNA export factor TAP 31.8 16 0.00034 38.0 0.0 80 358-438 217-307 (585)
86 PF05725 FNIP: FNIP Repeat; I 30.8 90 0.0019 20.1 3.5 32 490-522 12-43 (44)
87 KOG4308 LRR-containing protein 26.3 3.7 8E-05 42.7 -5.6 119 32-155 172-300 (478)
88 KOG0473 Leucine-rich repeat pr 23.9 4.9 0.00011 36.7 -4.5 82 85-178 39-121 (326)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.6e-32 Score=305.00 Aligned_cols=462 Identities=17% Similarity=0.120 Sum_probs=257.4
Q ss_pred hhhccCCCCcceEEeCCCCCc-cccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhccc
Q 008856 5 VISITSLPALCKMEIGGCKKV-VWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKS 79 (551)
Q Consensus 5 ~~~~~~~~~L~~L~l~~~~~~-~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 79 (551)
..+|..+++|++|++++|... .++. .+.+|++|++.++.... .+|. ..+++|++|+++++ .+...
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~---~~p~---~~l~~L~~L~Ls~n-~~~~~--- 155 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG---SIPR---GSIPNLETLDLSNN-MLSGE--- 155 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc---ccCc---cccCCCCEEECcCC-ccccc---
Confidence 456888999999999998754 2433 36779999998876543 2332 24788888888884 44422
Q ss_pred CcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCc
Q 008856 80 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLV 159 (551)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 159 (551)
....+..+++|++|++++|.-...+|.. +..+ ++|++|++++|.....+|..+..+++|++|+++++....
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~-----~~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNS-----LTNL----TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChh-----hhhC----cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 3344678888888888886422334432 6666 888888888876555677778888888888888764333
Q ss_pred ccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc-cCCCCccEEEEecCCCcccccccc
Q 008856 160 SFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPSSLKMLTIWYCDNIRTLTVEE 237 (551)
Q Consensus 160 ~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~ 237 (551)
.+|. ++.+++|++|++++|.....++..+ ..+++|+.|++++|.....++.. ..+++|+.|++++|.-...+ |.
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~ 302 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI--PE 302 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC--Ch
Confidence 4444 5667888888888765443444432 22367778877775433233322 33567777777765333233 44
Q ss_pred cccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEE
Q 008856 238 GIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETIS 317 (551)
Q Consensus 238 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 317 (551)
.+.. +++|+.|+++++..... .|..+..+. +|+.|++++|.....++..++.+++|+.|+
T Consensus 303 ~~~~--------l~~L~~L~l~~n~~~~~------~~~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 303 LVIQ--------LQNLEILHLFSNNFTGK------IPVALTSLP------RLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred hHcC--------CCCCcEEECCCCccCCc------CChhHhcCC------CCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 4444 45566666665332111 111111111 244444444443333333444444444444
Q ss_pred EecC------------------------CCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccc
Q 008856 318 IYNC------------------------ENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLK 373 (551)
Q Consensus 318 l~~~------------------------~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 373 (551)
++++ .....+|..+..+++|+.|++++|.....+|.....+++|+.|++++|....
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 4442 2222233334444455555555443222333333333455555555543333
Q ss_pred ccccccccCCcccceeccc-ccc-ccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccc
Q 008856 374 ALPKGLHNLSTLQDLTIGG-ALL-SLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSF 451 (551)
Q Consensus 374 ~~~~~~~~l~~L~~L~l~~-~l~-~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 451 (551)
.++..+..+++|+.|++++ .+. .+|.....++|+.|++++|+... ..+.. +..+++|+.|++++|. . ...+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~-~~~~~---~~~l~~L~~L~Ls~N~-l--~~~~ 515 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG-AVPRK---LGSLSELMQLKLSENK-L--SGEI 515 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCC-ccChh---hhhhhccCEEECcCCc-c--eeeC
Confidence 3333444555555555555 221 23333334566666666665332 22222 4566677777777762 2 2244
Q ss_pred ccccccccccccccccccccccccCCChh-hhhhhccCCCCcCEEEEcCCCCccccCCC-CCccccceEeecCCc
Q 008856 452 PLEDKRLGTVLRLPTTLTSLRIEDFPNLE-RLSSSIIDLRNLTELVLRGCPKLKYFPEK-GLPSSLLELWISGCP 524 (551)
Q Consensus 452 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 524 (551)
|+.. ..+++|++|++++ +.+. .+|..+..+++|++|++++|+....+|.. ..+++|+.+++++|+
T Consensus 516 p~~~-------~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 516 PDEL-------SSCKKLVSLDLSH-NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred ChHH-------cCccCCCEEECCC-CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 4433 2456777777777 3443 45566667777777777776544455542 224567777777775
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-31 Score=304.46 Aligned_cols=456 Identities=15% Similarity=0.111 Sum_probs=299.9
Q ss_pred CCcceEEeCCCCCcc-cc---ccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVV-WR---SATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~-~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
..++.|+++++.... ++ ..+++|+.|++.++.... .+|..+...+++|++|++++++-...+ + ...+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~---~ip~~~~~~l~~L~~L~Ls~n~l~~~~---p---~~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG---PIPDDIFTTSSSLRYLNLSNNNFTGSI---P---RGSI 139 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC---cCChHHhccCCCCCEEECcCCcccccc---C---cccc
Confidence 478999999876433 22 237889999999886432 466666667899999999995432222 3 2568
Q ss_pred CCccEEeecCCcccc-ccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-CC
Q 008856 88 CSLKRLTITSCPKLQ-SLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE-VA 165 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~-~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~ 165 (551)
++|++|++++|. +. .++.. +..+ ++|++|++++|.....+|..+.++++|++|++++|.....+|. ++
T Consensus 140 ~~L~~L~Ls~n~-~~~~~p~~-----~~~l----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 140 PNLETLDLSNNM-LSGEIPND-----IGSF----SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred CCCCEEECcCCc-ccccCChH-----HhcC----CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence 999999999975 54 34433 6667 9999999999866668888999999999999999754445554 67
Q ss_pred CCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc-cCCCCccEEEEecCCCcccccccccccccCC
Q 008856 166 LPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSS 244 (551)
Q Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 244 (551)
.+++|++|++++|.....++..+ ..+++|++|++++|.....++.. ..+++|+.|+++++.-...+ |..+..
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~--- 282 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEI--GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFS--- 282 (968)
T ss_pred CcCCccEEECcCCccCCcCChhH--hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC--chhHhh---
Confidence 79999999999987555566542 23489999999997543344433 55689999999986443344 666666
Q ss_pred CcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCc
Q 008856 245 SRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENL 324 (551)
Q Consensus 245 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 324 (551)
+++|++|++++|..... +|.++.++. +|+.|++++|......+..+..+++|+.|++++|...
T Consensus 283 -----l~~L~~L~Ls~n~l~~~------~p~~~~~l~------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 283 -----LQKLISLDLSDNSLSGE------IPELVIQLQ------NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred -----ccCcCEEECcCCeeccC------CChhHcCCC------CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 67899999998642222 333333333 6999999999877778888999999999999996544
Q ss_pred ccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-ccc-ccccC-C
Q 008856 325 KILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALL-SLEED-G 401 (551)
Q Consensus 325 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~-~l~~~-~ 401 (551)
..+|..+..+++|+.|++++|.....+|......++|+.|++++|.....+|..+..+++|+.|++++ .+. .+|.. .
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 56788888899999999998654334444333334555555555443334444455555555555544 222 12211 2
Q ss_pred ------------------------cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccc
Q 008856 402 ------------------------LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKR 457 (551)
Q Consensus 402 ------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 457 (551)
.+++|++|++++|...... +. ....++|+.|++++|. . ...+|...
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-p~----~~~~~~L~~L~ls~n~-l--~~~~~~~~-- 495 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PD----SFGSKRLENLDLSRNQ-F--SGAVPRKL-- 495 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec-Cc----ccccccceEEECcCCc-c--CCccChhh--
Confidence 2445555555555432211 11 1123455666666552 1 11223222
Q ss_pred ccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC-CCccccceEeecCCch
Q 008856 458 LGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-GLPSSLLELWISGCPL 525 (551)
Q Consensus 458 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~ 525 (551)
..+++|+.|+++++.-...+|..+.++++|++|++++|.....+|.. .-+++|+.|++++|..
T Consensus 496 -----~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 496 -----GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred -----hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 24567777777774333356666777788888888875543344432 2256788888888764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.7e-23 Score=237.87 Aligned_cols=312 Identities=22% Similarity=0.365 Sum_probs=157.4
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCC
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPS 168 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 168 (551)
+|+.|.+.++ .++.+|.. + .+.+|+.|++.++ .+..++.++..+++|+.|+++++..++.+|.+..++
T Consensus 590 ~Lr~L~~~~~-~l~~lP~~-----f-----~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~ 657 (1153)
T PLN03210 590 KLRLLRWDKY-PLRCMPSN-----F-----RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT 657 (1153)
T ss_pred ccEEEEecCC-CCCCCCCc-----C-----CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCC
Confidence 4666666664 35555543 1 1256666666663 455566666666666666666666666666666666
Q ss_pred CCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCccc
Q 008856 169 KLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRY 248 (551)
Q Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 248 (551)
+|+.|++++|..+..++..+ ..+++|+.|++++|..++.+|....+++|+.|++++|..+..+ |....
T Consensus 658 ~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~--p~~~~-------- 725 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF--PDIST-------- 725 (1153)
T ss_pred cccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc--ccccC--------
Confidence 66666666666666655542 1225566666666666666555444556666666665555444 33211
Q ss_pred ccCCccEEEEecCCCCcccccCC-CchhhhhhccccCCCCCccEEEeccCcchhh-------hHhhhcCCCCCcEEEEec
Q 008856 249 TSYLLEHLGIRYCPSLTCIFSKN-ELPATLESLEVGNLPPSLKSLRVRYCSKLES-------IAERLDNNTSLETISIYN 320 (551)
Q Consensus 249 ~~~~L~~L~l~~c~~l~~~~~~~-~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~l~~L~~L~l~~ 320 (551)
+|+.|+++++ .+.. +|.. .++ +|++|++.++..... .+.....+++|+.|++++
T Consensus 726 ---nL~~L~L~~n-~i~~-lP~~~~l~-------------~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 726 ---NISWLDLDET-AIEE-FPSNLRLE-------------NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred ---CcCeeecCCC-cccc-cccccccc-------------ccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 3555555552 2333 2211 111 244444443221000 000111223444555544
Q ss_pred CCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccccccccccC
Q 008856 321 CENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEED 400 (551)
Q Consensus 321 ~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~l~~l~~~ 400 (551)
|+.+..+|..+..+++|+.|++++|..++.+|... .+++|+.|++++|..+..+|.
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----------------------- 843 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----------------------- 843 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----------------------
Confidence 44444444444444455555555444444444322 223444444444444333322
Q ss_pred CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChh
Q 008856 401 GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLE 480 (551)
Q Consensus 401 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 480 (551)
.+++|++|++++|... . .|.+ +..+++|+.|++++| .. +..+|... ..+++|+.+++++|.+++
T Consensus 844 -~~~nL~~L~Ls~n~i~-~-iP~s---i~~l~~L~~L~L~~C-~~--L~~l~~~~-------~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 844 -ISTNISDLNLSRTGIE-E-VPWW---IEKFSNLSFLDMNGC-NN--LQRVSLNI-------SKLKHLETVDFSDCGALT 907 (1153)
T ss_pred -cccccCEeECCCCCCc-c-ChHH---HhcCCCCCEEECCCC-CC--cCccCccc-------ccccCCCeeecCCCcccc
Confidence 1235555555555422 1 1222 456667777777776 34 55555533 234667777777777666
Q ss_pred hh
Q 008856 481 RL 482 (551)
Q Consensus 481 ~~ 482 (551)
.+
T Consensus 908 ~~ 909 (1153)
T PLN03210 908 EA 909 (1153)
T ss_pred cc
Confidence 54
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.8e-23 Score=234.94 Aligned_cols=342 Identities=20% Similarity=0.318 Sum_probs=210.3
Q ss_pred hhccCCCCcceEEeCCCCC-------cccccc---c-cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCch
Q 008856 6 ISITSLPALCKMEIGGCKK-------VVWRSA---T-DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNET 74 (551)
Q Consensus 6 ~~~~~~~~L~~L~l~~~~~-------~~~~~~---~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 74 (551)
.+|..+++|+.|.+..... ..++.+ + .+|+.|.+.+++... +|..+ .+.+|++|++.+ +.++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~----lP~~f--~~~~L~~L~L~~-s~l~ 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC----MPSNF--RPENLVKLQMQG-SKLE 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC----CCCcC--CccCCcEEECcC-cccc
Confidence 3677888888888765321 113332 2 347777777665432 44433 246777777777 4567
Q ss_pred hhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEcc
Q 008856 75 CIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFK 154 (551)
Q Consensus 75 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~ 154 (551)
.+|.+ +..+++|+.|+++++..+..+|. +..+ ++|++|++++|..+..+|..+..+++|+.|++++
T Consensus 625 ~L~~~----~~~l~~Lk~L~Ls~~~~l~~ip~------ls~l----~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 625 KLWDG----VHSLTGLRNIDLRGSKNLKEIPD------LSMA----TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred ccccc----cccCCCCCEEECCCCCCcCcCCc------cccC----CcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 66432 35677778888777666666654 3333 7777888877777777777777777777888777
Q ss_pred CCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCccccc
Q 008856 155 CSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLT 234 (551)
Q Consensus 155 c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 234 (551)
|+.++.+|....+++|+.|++++|..+..++.. ..+|+.|+++++ .++.+|....+++|+.|.+.++... .+
T Consensus 691 c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n-~i~~lP~~~~l~~L~~L~l~~~~~~-~l- 762 (1153)
T PLN03210 691 CENLEILPTGINLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDET-AIEEFPSNLRLENLDELILCEMKSE-KL- 762 (1153)
T ss_pred CCCcCccCCcCCCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCC-ccccccccccccccccccccccchh-hc-
Confidence 777777776556777777777777666555432 145667776663 3445554333455555555443211 11
Q ss_pred ccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCc
Q 008856 235 VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLE 314 (551)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 314 (551)
+..+.. ++. .....+++|+.|++++|.....++..++++++|+
T Consensus 763 -~~~~~~-------------------------------l~~-----~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 763 -WERVQP-------------------------------LTP-----LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805 (1153)
T ss_pred -cccccc-------------------------------cch-----hhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence 111111 000 0001122577777777766666666777777777
Q ss_pred EEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc--
Q 008856 315 TISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-- 392 (551)
Q Consensus 315 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-- 392 (551)
.|++++|+.++.+|..+ .+++|++|++++|..+..+|... ++|+.|++++ +.++.+|..+..+++|+.|++++
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS---TNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred EEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---cccCEeECCC-CCCccChHHHhcCCCCCEEECCCCC
Confidence 77777777777776554 56777777777777776665432 3677777776 45666777677777777777766
Q ss_pred cccccccC-CcCCCcceeEecCCchhh
Q 008856 393 ALLSLEED-GLPTNLHSLVIRGNMEIW 418 (551)
Q Consensus 393 ~l~~l~~~-~~~~~L~~L~l~~~~~~~ 418 (551)
.+..++.. ..+++|+.+++++|..+.
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCcccc
Confidence 55555543 445667777777776554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=9.3e-25 Score=213.08 Aligned_cols=380 Identities=16% Similarity=0.206 Sum_probs=209.7
Q ss_pred CCCc-cEEEecCCCCchhhcccCcchhcc-c-CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc
Q 008856 59 IPKL-EELKINNIQNETCIWKSHNELLQD-I-CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV 135 (551)
Q Consensus 59 ~~~L-~~L~l~~~~~l~~~~~~~~~~~~~-l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~ 135 (551)
|+.. +.|+.++ +.++.+ ....+.. + +.-+.|+++++ .+..+..+ .+.++ ++|+.+++.+ +.++
T Consensus 50 c~c~~~lldcs~-~~lea~---~~~~l~g~lp~~t~~LdlsnN-kl~~id~~----~f~nl----~nLq~v~l~~-N~Lt 115 (873)
T KOG4194|consen 50 CPCNTRLLDCSD-RELEAI---DKSRLKGFLPSQTQTLDLSNN-KLSHIDFE----FFYNL----PNLQEVNLNK-NELT 115 (873)
T ss_pred CCCCceeeecCc-cccccc---cccccCCcCccceeeeecccc-ccccCcHH----HHhcC----Ccceeeeecc-chhh
Confidence 4433 4456665 566655 2222222 2 34567999984 57777664 36677 8999999988 5678
Q ss_pred ccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc
Q 008856 136 KLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV 213 (551)
Q Consensus 136 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 213 (551)
.+|.......+|+.|++.+ +.+.++.. ++..+.|++|+++.|. +..++...+.. ..++++|++++ +.++.+..+
T Consensus 116 ~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~-~~ni~~L~La~-N~It~l~~~ 191 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPA-KVNIKKLNLAS-NRITTLETG 191 (873)
T ss_pred hcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCC-CCCceEEeecc-ccccccccc
Confidence 8887777778899999987 56666554 4557888888888843 55554332211 16788888887 455555544
Q ss_pred c--CCCCccEEEEecCCCccccccccc-ccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCcc
Q 008856 214 Q--LPSSLKMLTIWYCDNIRTLTVEEG-IQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLK 290 (551)
Q Consensus 214 ~--~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~ 290 (551)
. .+.+|-.|.+++ +.++.+ |.. |.+ +++| +
T Consensus 192 ~F~~lnsL~tlkLsr-NrittL--p~r~Fk~--------L~~L------------------------------------~ 224 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSR-NRITTL--PQRSFKR--------LPKL------------------------------------E 224 (873)
T ss_pred cccccchheeeeccc-Cccccc--CHHHhhh--------cchh------------------------------------h
Confidence 2 234666666665 345544 332 211 3334 4
Q ss_pred EEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEcc
Q 008856 291 SLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYD 368 (551)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 368 (551)
.|++..|.+-..-...|.++++|+.|.+.. +++..+. ..+-.+.++++|+++. +.+..+.. ....+++|+.|++++
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccch
Confidence 444444432222233344455555555544 3343331 2223344555555554 23333332 112233455555554
Q ss_pred Ccccccc-ccccccCCcccceeccc-cccccccCC--cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCC
Q 008856 369 CKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEEDG--LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDD 444 (551)
Q Consensus 369 c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 444 (551)
+.+.++ +++++..++|+.|+++. .+.++++.+ .+..|++|+|+.|. ++.+.... +.++.+|++|++++|.
T Consensus 303 -NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a---f~~lssL~~LdLr~N~- 376 (873)
T KOG4194|consen 303 -NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA---FVGLSSLHKLDLRSNE- 376 (873)
T ss_pred -hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhH---HHHhhhhhhhcCcCCe-
Confidence 233332 34455555555555555 555555542 24666777777666 44333332 6667777777777662
Q ss_pred CCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCCCccccCCCCC-ccccceEe
Q 008856 445 DTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFPEKGL-PSSLLELW 519 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~ 519 (551)
+...-++. ...|..+++|+.|++.+ |+++.+| ..+..|+.|++|++.+ +-+.++-...+ +-.|++|.
T Consensus 377 ---ls~~IEDa---a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv 445 (873)
T KOG4194|consen 377 ---LSWCIEDA---AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELV 445 (873)
T ss_pred ---EEEEEecc---hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhh
Confidence 33222211 12344567777777777 7777777 5567777788888877 44555533222 22455553
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.5e-24 Score=208.32 Aligned_cols=335 Identities=17% Similarity=0.243 Sum_probs=197.7
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-c
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL-P 138 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~-~ 138 (551)
+.-+.|++++ +++.++ ....|..+++|+.+++.++ .++.||..+ +.. .+|+.|+|.+| .+..+ .
T Consensus 78 ~~t~~Ldlsn-Nkl~~i---d~~~f~nl~nLq~v~l~~N-~Lt~IP~f~-----~~s----ghl~~L~L~~N-~I~sv~s 142 (873)
T KOG4194|consen 78 SQTQTLDLSN-NKLSHI---DFEFFYNLPNLQEVNLNKN-ELTRIPRFG-----HES----GHLEKLDLRHN-LISSVTS 142 (873)
T ss_pred cceeeeeccc-cccccC---cHHHHhcCCcceeeeeccc-hhhhccccc-----ccc----cceeEEeeecc-ccccccH
Confidence 4567899998 788876 5566788999999999984 688887642 222 67999999985 44444 3
Q ss_pred cccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC-
Q 008856 139 QSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL- 215 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 215 (551)
+.+..++.|+.||++. +.++.++. +..-.++++|++++|. ++.+....+ .++.+|..|.++. +.++.+|...+
T Consensus 143 e~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~Fk 218 (873)
T KOG4194|consen 143 EELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSR-NRITTLPQRSFK 218 (873)
T ss_pred HHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeeccc-CcccccCHHHhh
Confidence 5677788999999998 57777664 3345679999999854 666554322 3447899999987 56777776633
Q ss_pred -CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEe
Q 008856 216 -PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRV 294 (551)
Q Consensus 216 -~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l 294 (551)
+++|+.|++.+ +.++.+. .-.|.. +++|+.|.+.. +++.. ...+.|-. + .++++|++
T Consensus 219 ~L~~L~~LdLnr-N~irive-~ltFqg--------L~Sl~nlklqr-N~I~k-L~DG~Fy~-l---------~kme~l~L 276 (873)
T KOG4194|consen 219 RLPKLESLDLNR-NRIRIVE-GLTFQG--------LPSLQNLKLQR-NDISK-LDDGAFYG-L---------EKMEHLNL 276 (873)
T ss_pred hcchhhhhhccc-cceeeeh-hhhhcC--------chhhhhhhhhh-cCccc-ccCcceee-e---------cccceeec
Confidence 68899998877 3343220 111222 33455555544 33333 22222211 0 13566666
Q ss_pred ccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCC-CCCCCccEEEEccCccc
Q 008856 295 RYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGG-LPCAKLTALEIYDCKRL 372 (551)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l 372 (551)
..|.....-.+.+.+++.|++|++++ +.+..+ +.+...+++|++|++++ +.++.++... ..+..|++|.++. +.+
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi 353 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSI 353 (873)
T ss_pred ccchhhhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cch
Confidence 66644333334455566666666666 555544 44444556666666666 4555554421 1233566666665 445
Q ss_pred ccccc-ccccCCcccceeccc-cccc-ccc----CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 373 KALPK-GLHNLSTLQDLTIGG-ALLS-LEE----DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 373 ~~~~~-~~~~l~~L~~L~l~~-~l~~-l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
..+.+ .+..+.+|+.|+++. .+.. ++. ...++.|+.|++.||+ ++.+.... +.++++||+|++.+|
T Consensus 354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krA---fsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRA---FSGLEALEHLDLGDN 426 (873)
T ss_pred HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhh---hccCcccceecCCCC
Confidence 55443 244556666666655 2211 111 1225666666666665 33332222 556666666666665
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.6e-24 Score=220.75 Aligned_cols=399 Identities=19% Similarity=0.248 Sum_probs=210.4
Q ss_pred CCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc
Q 008856 56 KPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV 135 (551)
Q Consensus 56 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~ 135 (551)
.+...+|+.|++++ +.+... |.. +..+++|+.|+++.+ .+..+|.+ ...+ .+|++|.|.+ +.++
T Consensus 41 ~~~~v~L~~l~lsn-n~~~~f---p~~-it~l~~L~~ln~s~n-~i~~vp~s-----~~~~----~~l~~lnL~~-n~l~ 104 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSN-NQISSF---PIQ-ITLLSHLRQLNLSRN-YIRSVPSS-----CSNM----RNLQYLNLKN-NRLQ 104 (1081)
T ss_pred hhheeeeEEeeccc-cccccC---Cch-hhhHHHHhhcccchh-hHhhCchh-----hhhh----hcchhheecc-chhh
Confidence 33345577888877 444443 333 566777888887763 46666643 4444 7778888775 5667
Q ss_pred ccccccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhh--------------hhccCCCccE-E
Q 008856 136 KLPQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAW--------------MCDTNSSLEI-L 199 (551)
Q Consensus 136 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~--------------~~~~~~~L~~-L 199 (551)
..|.++..+++|+.|+++. +.+..+|. +..+..+..+..++|..+..++... +......+++ |
T Consensus 105 ~lP~~~~~lknl~~LdlS~-N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~l 183 (1081)
T KOG0618|consen 105 SLPASISELKNLQYLDLSF-NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQL 183 (1081)
T ss_pred cCchhHHhhhcccccccch-hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheee
Confidence 7777777777888888877 45555554 3445555555555542222222110 0000022333 4
Q ss_pred EEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhh
Q 008856 200 SIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLES 279 (551)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 279 (551)
++.++... ......+++|+.+...+ +.+..+. ..-++++.|...+|.-. . ......|.
T Consensus 184 dLr~N~~~--~~dls~~~~l~~l~c~r-n~ls~l~-------------~~g~~l~~L~a~~n~l~-~-~~~~p~p~---- 241 (1081)
T KOG0618|consen 184 DLRYNEME--VLDLSNLANLEVLHCER-NQLSELE-------------ISGPSLTALYADHNPLT-T-LDVHPVPL---- 241 (1081)
T ss_pred ecccchhh--hhhhhhccchhhhhhhh-cccceEE-------------ecCcchheeeeccCcce-e-eccccccc----
Confidence 44443221 11112233344443332 2222220 11224555555553322 1 22222333
Q ss_pred ccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCC
Q 008856 280 LEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCA 359 (551)
Q Consensus 280 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 359 (551)
+|++++++++. ...++..++.+++|+.+...+ +.+..+|..+....+|+.|.+.. +.++.+|.......
T Consensus 242 --------nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~ 310 (1081)
T KOG0618|consen 242 --------NLQYLDISHNN-LSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLK 310 (1081)
T ss_pred --------cceeeecchhh-hhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccc
Confidence 78888888873 555667778888888888887 66777777777777888887777 46777776555556
Q ss_pred CccEEEEccCcccccccccccc-CC-cccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCc
Q 008856 360 KLTALEIYDCKRLKALPKGLHN-LS-TLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSL 434 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~-l~-~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 434 (551)
+|++|++.. +++.++|+.+-. +. +|..|+.+. .+...+.. ...+.|+.|.+.+|+.-+..++. +.+++.|
T Consensus 311 sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~----l~~~~hL 385 (1081)
T KOG0618|consen 311 SLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV----LVNFKHL 385 (1081)
T ss_pred eeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh----hccccce
Confidence 788888877 556666653211 11 133333333 33333322 22345555555555544444333 4455555
Q ss_pred cEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccc
Q 008856 435 RHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSS 514 (551)
Q Consensus 435 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 514 (551)
+.|++++|. +..||... ++.+..|++|++++ |+|+.+|..+.+++.|++|...+ +.+..+|+...+++
T Consensus 386 KVLhLsyNr----L~~fpas~------~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~q 453 (1081)
T KOG0618|consen 386 KVLHLSYNR----LNSFPASK------LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQ 453 (1081)
T ss_pred eeeeecccc----cccCCHHH------HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCc
Confidence 555555553 55555533 23344555555555 55555554444444444444444 33444443333334
Q ss_pred cceEeec
Q 008856 515 LLELWIS 521 (551)
Q Consensus 515 L~~L~i~ 521 (551)
|+.+|++
T Consensus 454 L~~lDlS 460 (1081)
T KOG0618|consen 454 LKVLDLS 460 (1081)
T ss_pred ceEEecc
Confidence 4444443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.4e-24 Score=202.99 Aligned_cols=376 Identities=19% Similarity=0.212 Sum_probs=204.8
Q ss_pred ccCCCCcceEEeCCCCCcccccc---ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchh
Q 008856 8 ITSLPALCKMEIGGCKKVVWRSA---TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELL 84 (551)
Q Consensus 8 ~~~~~~L~~L~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 84 (551)
+..++.+.+|++++++..+.++. +..++.+++++....+ +|.. ....++++.++.+. +.+..+ +.+ +
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~----lp~~-i~s~~~l~~l~~s~-n~~~el---~~~-i 133 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE----LPEQ-IGSLISLVKLDCSS-NELKEL---PDS-I 133 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh----ccHH-Hhhhhhhhhhhccc-cceeec---Cch-H
Confidence 34456667777777776665554 4445555555544332 3332 22356677777776 455544 444 4
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE- 163 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~- 163 (551)
+.+..|+.++..++ ++.++|+. +..+ .+|..+++.++ .++.+|...-+|..|++|+... +.++.+|+
T Consensus 134 ~~~~~l~dl~~~~N-~i~slp~~-----~~~~----~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~ 201 (565)
T KOG0472|consen 134 GRLLDLEDLDATNN-QISSLPED-----MVNL----SKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETLPPE 201 (565)
T ss_pred HHHhhhhhhhcccc-ccccCchH-----HHHH----HHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcCChh
Confidence 56667777776663 46666665 3333 56666677663 4455555544577777777655 45666666
Q ss_pred CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc--cCCCCccEEEEecCCCcccccccccccc
Q 008856 164 VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDNIRTLTVEEGIQC 241 (551)
Q Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 241 (551)
.+.+.+|+.|++.. +++..+|+. .++..|+.|.+.. +.++.++.+ ..++++..||+.. ++++++ |+++.-
T Consensus 202 lg~l~~L~~LyL~~-Nki~~lPef---~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~--Pde~cl 273 (565)
T KOG0472|consen 202 LGGLESLELLYLRR-NKIRFLPEF---PGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEV--PDEICL 273 (565)
T ss_pred hcchhhhHHHHhhh-cccccCCCC---CccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccC--chHHHH
Confidence 66677777777766 335566644 4456666666665 445555554 3456777777776 567777 776665
Q ss_pred cCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcC-----CCCCcE-
Q 008856 242 SSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDN-----NTSLET- 315 (551)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~- 315 (551)
+.+|++|++++ +.++. +|..+.+++ |+.|.+.+|+.-+.-.+.+.. +..|++
T Consensus 274 --------LrsL~rLDlSN-N~is~------Lp~sLgnlh-------L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 274 --------LRSLERLDLSN-NDISS------LPYSLGNLH-------LKFLALEGNPLRTIRREIISKGTQEVLKYLRSK 331 (565)
T ss_pred --------hhhhhhhcccC-Ccccc------CCcccccce-------eeehhhcCCchHHHHHHHHcccHHHHHHHHHHh
Confidence 55677777777 44444 555455554 777777777643322111110 001111
Q ss_pred ---EEEecC--CCcc--cccc----cccCCCCcceEEecCCCCCccCCCCCCCCC---CccEEEEccCcccccccccccc
Q 008856 316 ---ISIYNC--ENLK--ILPS----GLHKLHQLREISIGSCGNLVSFPGGGLPCA---KLTALEIYDCKRLKALPKGLHN 381 (551)
Q Consensus 316 ---L~l~~~--~~l~--~~~~----~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~---~L~~L~l~~c~~l~~~~~~~~~ 381 (551)
=.++.. .... +.+. ....+.+.+.|++++ ..++.+|....... -...++++. +++.++|..+..
T Consensus 332 ~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~ 409 (565)
T KOG0472|consen 332 IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVE 409 (565)
T ss_pred hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHH
Confidence 000000 0000 0011 112245677777777 56666665222111 255666666 556667766555
Q ss_pred CCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 382 LSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 382 l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++.+.+.-+.. +..++++. ..+++|..|++++|. +.+.+.+ +.++..|+.|+++.|
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e----~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEE----MGSLVRLQTLNLSFN 468 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchh----hhhhhhhheeccccc
Confidence 55543332222 33333332 345666677776665 4444444 345566777777666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3e-23 Score=203.97 Aligned_cols=337 Identities=21% Similarity=0.333 Sum_probs=184.4
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc--
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-- 135 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-- 135 (551)
.+.+++.|.+.+ +++..+ |.. ++.+.+|++|.+.++ ++..+-.+ +..+ |.|+.+.+..| +++
T Consensus 30 qMt~~~WLkLnr-t~L~~v---PeE-L~~lqkLEHLs~~HN-~L~~vhGE-----Ls~L----p~LRsv~~R~N-~LKns 93 (1255)
T KOG0444|consen 30 QMTQMTWLKLNR-TKLEQV---PEE-LSRLQKLEHLSMAHN-QLISVHGE-----LSDL----PRLRSVIVRDN-NLKNS 93 (1255)
T ss_pred HhhheeEEEech-hhhhhC---hHH-HHHHhhhhhhhhhhh-hhHhhhhh-----hccc----hhhHHHhhhcc-ccccC
Confidence 356666677666 566665 554 466667777777764 35444332 5555 66677766663 333
Q ss_pred ccccccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc-
Q 008856 136 KLPQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV- 213 (551)
Q Consensus 136 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~- 213 (551)
.+|..+..+..|..|++++ +.++..|. +....++-.|+++.|. ++.+|...+ ..+..|-.||+++ +.++.+|..
T Consensus 94 GiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~-NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSN-NRLEMLPPQI 169 (1255)
T ss_pred CCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhcccc-chhhhcCHHH
Confidence 4566666677777777766 46666665 4445666666666633 555554322 2335555666665 334444433
Q ss_pred cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEE
Q 008856 214 QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLR 293 (551)
Q Consensus 214 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 293 (551)
.-+.+|++|++++++-.. +....+|+ + .+|+.|.
T Consensus 170 RRL~~LqtL~Ls~NPL~h------------------------------------fQLrQLPs-m---------tsL~vLh 203 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNH------------------------------------FQLRQLPS-M---------TSLSVLH 203 (1255)
T ss_pred HHHhhhhhhhcCCChhhH------------------------------------HHHhcCcc-c---------hhhhhhh
Confidence 223445555555432110 11111111 0 1245555
Q ss_pred eccCcc-hhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccc
Q 008856 294 VRYCSK-LESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRL 372 (551)
Q Consensus 294 l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 372 (551)
+++... ...+|..+..+.+|..++++. +++..+|..+.++++|+.|.+++ ++++.+......+.+|++|+++. +++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQL 280 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQL 280 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chh
Confidence 544432 234455555666666666665 55666666666666666666666 45555554444444666666666 556
Q ss_pred cccccccccCCcccceeccc---cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcc
Q 008856 373 KALPKGLHNLSTLQDLTIGG---ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMM 448 (551)
Q Consensus 373 ~~~~~~~~~l~~L~~L~l~~---~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 448 (551)
+.+|..+..+++|+.|.+.+ ..+.+|.+ +.+.+|+++...+|. +.- .|+. +..++.|+.|.+++|. +
T Consensus 281 t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LEl-VPEg---lcRC~kL~kL~L~~Nr----L 351 (1255)
T KOG0444|consen 281 TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LEL-VPEG---LCRCVKLQKLKLDHNR----L 351 (1255)
T ss_pred ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-ccc-Cchh---hhhhHHHHHhcccccc----e
Confidence 66666666666666666655 44455554 445566666655554 221 2222 5566666666666652 5
Q ss_pred cccccccccccccccccccccccccccCCCh
Q 008856 449 VSFPLEDKRLGTVLRLPTTLTSLRIEDFPNL 479 (551)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 479 (551)
..+|+.+ -+++.|+.|++++.+++
T Consensus 352 iTLPeaI-------HlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 352 ITLPEAI-------HLLPDLKVLDLRENPNL 375 (1255)
T ss_pred eechhhh-------hhcCCcceeeccCCcCc
Confidence 5566544 24556666666665554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=7.9e-23 Score=201.07 Aligned_cols=364 Identities=20% Similarity=0.279 Sum_probs=180.1
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
+|-.+-.++++ +..+ ....+.....+..++-|.+.. ..+..+|++ ++.+ ++|++|.++. +.+..+.
T Consensus 6 LpFVrGvDfsg-NDFs--g~~FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~H-N~L~~vh 71 (1255)
T KOG0444|consen 6 LPFVRGVDFSG-NDFS--GDRFPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAH-NQLISVH 71 (1255)
T ss_pred cceeecccccC-CcCC--CCcCchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhh-hhhHhhh
Confidence 45555566666 3322 011222345566666666666 446666655 5555 6666666666 3445555
Q ss_pred cccCCCCCCceEEEccCCCCc--ccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 139 QSSFSLSSLREIEIFKCSSLV--SFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
..+..++.|+.+.+.+ ++++ .+|+ +..+..|..|+++.|. +...|.. . ..
T Consensus 72 GELs~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~---L----------------------E~ 124 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN---L----------------------EY 124 (1255)
T ss_pred hhhccchhhHHHhhhc-cccccCCCCchhcccccceeeecchhh-hhhcchh---h----------------------hh
Confidence 5566666666666655 2222 2333 3334444444444422 3333322 0 12
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
..+.-.|.+++ +++..+ |..++- .+..|-.|++++ +++.. +|+.+..|. .|+.|.++
T Consensus 125 AKn~iVLNLS~-N~IetI--Pn~lfi-------nLtDLLfLDLS~-NrLe~------LPPQ~RRL~------~LqtL~Ls 181 (1255)
T KOG0444|consen 125 AKNSIVLNLSY-NNIETI--PNSLFI-------NLTDLLFLDLSN-NRLEM------LPPQIRRLS------MLQTLKLS 181 (1255)
T ss_pred hcCcEEEEccc-CccccC--CchHHH-------hhHhHhhhcccc-chhhh------cCHHHHHHh------hhhhhhcC
Confidence 22333444444 344444 433221 011233344444 33322 333333333 35555555
Q ss_pred cCcchhhhHhhhcCCCCCcEEEEecCCC-cccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc
Q 008856 296 YCSKLESIAERLDNNTSLETISIYNCEN-LKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA 374 (551)
Q Consensus 296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 374 (551)
+|+..-.-...+..+.+|++|.+++... +..+|.++..+.+|+.+|++. +.+..
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-------------------------N~Lp~ 236 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-------------------------NNLPI 236 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-------------------------cCCCc
Confidence 5543222222233344444444444221 223344444555555555544 33444
Q ss_pred cccccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccc
Q 008856 375 LPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFP 452 (551)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 452 (551)
+|+.+.++++|+.|++++ .+..+... +...+|++|+++.|+ +...+.. +..+++|++|.+.+|.-. ...+|
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a----vcKL~kL~kLy~n~NkL~--FeGiP 309 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDA----VCKLTKLTKLYANNNKLT--FEGIP 309 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHH----HhhhHHHHHHHhccCccc--ccCCc
Confidence 444445555555555555 44433322 233466666666665 3322222 556667777776666333 55666
Q ss_pred cccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC-CccccceEeecCCchHH
Q 008856 453 LEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG-LPSSLLELWISGCPLIE 527 (551)
Q Consensus 453 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~i~~c~~l~ 527 (551)
..++ -+..|+.+..++ |+++-+|.++..+++|+.|.+.. +++-.+|+.. +++-|+.|++..+|++.
T Consensus 310 SGIG-------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 310 SGIG-------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cchh-------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 6552 455677777776 67777777777777777777766 5566666643 35677777777776553
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=9.3e-23 Score=209.39 Aligned_cols=433 Identities=20% Similarity=0.202 Sum_probs=276.4
Q ss_pred cceEEeCCCCCcc-----ccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccC
Q 008856 14 LCKMEIGGCKKVV-----WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 88 (551)
Q Consensus 14 L~~L~l~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 88 (551)
+..|++..+-.+. +...+. |+.|++++..... ||..+ ..+.+|+.|+++. +.+..+ +.. ...+.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~-L~~l~lsnn~~~~----fp~~i-t~l~~L~~ln~s~-n~i~~v---p~s-~~~~~ 91 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVK-LKSLDLSNNQISS----FPIQI-TLLSHLRQLNLSR-NYIRSV---PSS-CSNMR 91 (1081)
T ss_pred HHhhhccccccccCchHHhhheee-eEEeecccccccc----CCchh-hhHHHHhhcccch-hhHhhC---chh-hhhhh
Confidence 5555655554444 122233 7777777665442 33332 2356777777776 566665 533 46677
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-----
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE----- 163 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~----- 163 (551)
+|++|.|.+ +.+..+|.+ +..+ .+|+.|+++++ ....+|..+..+..++.+..+++-++..++.
T Consensus 92 ~l~~lnL~~-n~l~~lP~~-----~~~l----knl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~ 160 (1081)
T KOG0618|consen 92 NLQYLNLKN-NRLQSLPAS-----ISEL----KNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKK 160 (1081)
T ss_pred cchhheecc-chhhcCchh-----HHhh----hcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchh
Confidence 788888776 456666655 6666 77788888774 3345555555555555555554322222221
Q ss_pred ---------------CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCC
Q 008856 164 ---------------VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCD 228 (551)
Q Consensus 164 ---------------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 228 (551)
...+.+ .|++..+... ... . ..+++|+.+.... ..+..+. ..-++++.|+..+|.
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d-l---s~~~~l~~l~c~r-n~ls~l~--~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD-L---SNLANLEVLHCER-NQLSELE--ISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccchhh-hhh-h---hhccchhhhhhhh-cccceEE--ecCcchheeeeccCc
Confidence 111222 2444443311 100 0 0112233332221 1111111 222567777777754
Q ss_pred CcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhc
Q 008856 229 NIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLD 308 (551)
Q Consensus 229 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 308 (551)
-.+.. .. ....+|++++++. ++++. +|.|+.... +|+.++..+|.. ..++..+.
T Consensus 231 l~~~~--~~----------p~p~nl~~~dis~-n~l~~------lp~wi~~~~------nle~l~~n~N~l-~~lp~ri~ 284 (1081)
T KOG0618|consen 231 LTTLD--VH----------PVPLNLQYLDISH-NNLSN------LPEWIGACA------NLEALNANHNRL-VALPLRIS 284 (1081)
T ss_pred ceeec--cc----------cccccceeeecch-hhhhc------chHHHHhcc------cceEecccchhH-HhhHHHHh
Confidence 33211 11 1134799999988 55554 556555554 799999998865 77778888
Q ss_pred CCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCC--CCCccEEEEccCccccccccc-cccCCcc
Q 008856 309 NNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLP--CAKLTALEIYDCKRLKALPKG-LHNLSTL 385 (551)
Q Consensus 309 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~-~~~l~~L 385 (551)
...+|+.|.+.+ +.++.+|.....+++|++|++.. +++..+|..... ..+|+.++.+. +.+...|.. -..+..|
T Consensus 285 ~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 285 RITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAAL 361 (1081)
T ss_pred hhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHH
Confidence 889999999988 67888888888899999999999 678888763222 11355666654 555555532 2356789
Q ss_pred cceeccc---cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccc
Q 008856 386 QDLTIGG---ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVL 462 (551)
Q Consensus 386 ~~L~l~~---~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
+.|++.+ +-+.+|....+++|+.|++++|+.-. ++... +.++..|++|+++|| . ++.+|+..
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~--~~kle~LeeL~LSGN--k--L~~Lp~tv------- 426 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASK--LRKLEELEELNLSGN--K--LTTLPDTV------- 426 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHH--HhchHHhHHHhcccc--h--hhhhhHHH-------
Confidence 9999988 66678888888999999999997332 22222 788999999999999 4 88998765
Q ss_pred cccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCC-CCCc-cccceEeecCCch
Q 008856 463 RLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE-KGLP-SSLLELWISGCPL 525 (551)
Q Consensus 463 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~i~~c~~ 525 (551)
...+.|++|.... |.+-.+| .+..++.|+.+|++. ++++.+.- +..+ ++||+|+++|++.
T Consensus 427 a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 3567999999998 8999999 778899999999998 67776533 3445 8999999999974
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.2e-23 Score=196.82 Aligned_cols=398 Identities=24% Similarity=0.313 Sum_probs=225.7
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
++..+..|++++ +++..+ |+. ++.+..++.++.+++ ++..+|+. +..+ .+|+.++.++ +.+.++
T Consensus 66 nL~~l~vl~~~~-n~l~~l---p~a-ig~l~~l~~l~vs~n-~ls~lp~~-----i~s~----~~l~~l~~s~-n~~~el 129 (565)
T KOG0472|consen 66 NLACLTVLNVHD-NKLSQL---PAA-IGELEALKSLNVSHN-KLSELPEQ-----IGSL----ISLVKLDCSS-NELKEL 129 (565)
T ss_pred cccceeEEEecc-chhhhC---CHH-HHHHHHHHHhhcccc-hHhhccHH-----Hhhh----hhhhhhhccc-cceeec
Confidence 345555566665 444444 433 455556666666653 35555554 3444 5566666665 344555
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc-cC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QL 215 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~ 215 (551)
+.+++.+-.|+.++-.+ +++.++|. +..+.+|..+.+.++. ++..++.... ...|++||... +.++.+|.. +.
T Consensus 130 ~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~--m~~L~~ld~~~-N~L~tlP~~lg~ 204 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA--MKRLKHLDCNS-NLLETLPPELGG 204 (565)
T ss_pred CchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH--HHHHHhcccch-hhhhcCChhhcc
Confidence 55666666666666555 34555554 4445555666665533 4444443222 24566665544 334455444 44
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
+.+|+.|++.+ +++..+ | .|.. |..|+.++++. +.++. +|.... +++. ++..||++
T Consensus 205 l~~L~~LyL~~-Nki~~l--P-ef~g--------cs~L~Elh~g~-N~i~~-lpae~~----~~L~------~l~vLDLR 260 (565)
T KOG0472|consen 205 LESLELLYLRR-NKIRFL--P-EFPG--------CSLLKELHVGE-NQIEM-LPAEHL----KHLN------SLLVLDLR 260 (565)
T ss_pred hhhhHHHHhhh-cccccC--C-CCCc--------cHHHHHHHhcc-cHHHh-hHHHHh----cccc------cceeeecc
Confidence 45555566555 344444 4 3333 44455555544 33332 221110 0111 46677777
Q ss_pred cCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccC------------------------
Q 008856 296 YCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSF------------------------ 351 (551)
Q Consensus 296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l------------------------ 351 (551)
.| .++..|..+.-+++|..|++++ +.+..+|..++++ .|+.|.+.|++ +..+
T Consensus 261 dN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 261 DN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 66 4566666666667777777776 5566667666666 66666666542 1000
Q ss_pred -------------------CCCCCCCCCccEEEEccCccccccccccccCCc---ccceeccc-cccccccC-CcCCCcc
Q 008856 352 -------------------PGGGLPCAKLTALEIYDCKRLKALPKGLHNLST---LQDLTIGG-ALLSLEED-GLPTNLH 407 (551)
Q Consensus 352 -------------------~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~---L~~L~l~~-~l~~l~~~-~~~~~L~ 407 (551)
|.... ..+.+.|++++ .+++.+|..+..... ....+++. .+..+|.. ..+..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~-~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelv 414 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYA-IITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELV 414 (565)
T ss_pred CCCCcccccccCCCCCCcccchhh-hhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHH
Confidence 00000 12566677766 567777754332222 45566666 66666653 1122222
Q ss_pred -eeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh---
Q 008856 408 -SLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS--- 483 (551)
Q Consensus 408 -~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--- 483 (551)
.+.++.|. +..+... +..+++|..|++++|. +..+|.+.+ .+..|+.|++++ |+++.+|
T Consensus 415 T~l~lsnn~-isfv~~~----l~~l~kLt~L~L~NN~----Ln~LP~e~~-------~lv~Lq~LnlS~-NrFr~lP~~~ 477 (565)
T KOG0472|consen 415 TDLVLSNNK-ISFVPLE----LSQLQKLTFLDLSNNL----LNDLPEEMG-------SLVRLQTLNLSF-NRFRMLPECL 477 (565)
T ss_pred HHHHhhcCc-cccchHH----HHhhhcceeeecccch----hhhcchhhh-------hhhhhheecccc-cccccchHHH
Confidence 34445554 3322222 7789999999999995 889998773 455688888888 6665544
Q ss_pred ---------------------hhccCCCCcCEEEEcCCCCccccCC-CCCccccceEeecCCc
Q 008856 484 ---------------------SSIIDLRNLTELVLRGCPKLKYFPE-KGLPSSLLELWISGCP 524 (551)
Q Consensus 484 ---------------------~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~i~~c~ 524 (551)
.++.++++|++|++.. +.+..+|. .+.+.+|+.|.+.|+|
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 2466788899999988 66777776 4668899999999986
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=3.4e-14 Score=151.06 Aligned_cols=173 Identities=30% Similarity=0.366 Sum_probs=108.4
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|+.|++++|. ++.++. ..++|+.|++++ +.+..+|.. ..+|+.|++++ +.+..+|.. +++|+.|+++
T Consensus 283 ~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~-N~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQ-LTSLPV---LPPGLQELSVSD-NQLASLPAL---PSELCKLWAYN-NQLTSLPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCc-cccccc---cccccceeECCC-CccccCCCC---ccccccccccc-Ccccccccc---ccccceEecC
Confidence 35566665553 222322 235566666666 455555432 23466666666 345555531 1367777777
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+ ++++.+|... .+|+.|++++ .+..+|. .+++|+.|++++|.. ... +. ..++|+.|++++|.
T Consensus 351 ~-N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~--l~~~L~~LdLs~N~L-t~L-P~------l~s~L~~LdLS~N~--- 413 (788)
T PRK15387 351 D-NQLASLPTLP---SELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRL-TSL-PV------LPSELKELMVSGNR--- 413 (788)
T ss_pred C-CccCCCCCCC---cccceehhhccccccCcc--cccccceEEecCCcc-cCC-CC------cccCCCEEEccCCc---
Confidence 6 4566665432 3556666666 5555654 245788888888873 221 11 23578889999884
Q ss_pred cccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
+..+|. .+.+|+.|++++ |.++.+|..+..+++|+.|++++++
T Consensus 414 -LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 414 -LTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -CCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 777775 346788899988 7888898888888999999999855
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=8.3e-14 Score=148.18 Aligned_cols=254 Identities=27% Similarity=0.335 Sum_probs=189.4
Q ss_pred CCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCc
Q 008856 194 SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNEL 273 (551)
Q Consensus 194 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 273 (551)
..-..|+++++ .++.+|. ..+++++.|.+.+ ++++.+ |... ++|++|++++ ++++. +|. +
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~-N~Lt~L--P~lp-----------~~Lk~LdLs~-N~Lts-LP~--l 260 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPD-NNLTSL--PALP-----------PELRTLEVSG-NQLTS-LPV--L 260 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccC-CcCCCC--CCCC-----------CCCcEEEecC-CccCc-ccC--c
Confidence 45667888875 6667765 3446899999988 577776 6543 3599999998 57776 442 2
Q ss_pred hhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC
Q 008856 274 PATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG 353 (551)
Q Consensus 274 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 353 (551)
|. +|+.|++++|. +..++. ...+|+.|++++ +.+..+|.. .++|+.|++++| .+..+|.
T Consensus 261 p~------------sL~~L~Ls~N~-L~~Lp~---lp~~L~~L~Ls~-N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 261 PP------------GLLELSIFSNP-LTHLPA---LPSGLCKLWIFG-NQLTSLPVL---PPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred cc------------ccceeeccCCc-hhhhhh---chhhcCEEECcC-Ccccccccc---ccccceeECCCC-ccccCCC
Confidence 33 69999999985 445544 236788999999 678887653 478999999994 7777765
Q ss_pred CCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCC
Q 008856 354 GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFS 432 (551)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 432 (551)
. +++|+.|++++ +.++.+|.. ..+|+.|++++ .+..+|. .+++|+.|++++|... . .+. ...
T Consensus 320 l---p~~L~~L~Ls~-N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L~-~-LP~------l~~ 382 (788)
T PRK15387 320 L---PSELCKLWAYN-NQLTSLPTL---PSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLT-S-LPA------LPS 382 (788)
T ss_pred C---ccccccccccc-Ccccccccc---ccccceEecCCCccCCCCC--CCcccceehhhccccc-c-Ccc------ccc
Confidence 2 23789999998 557777752 24799999999 8888876 3578999999988733 2 221 235
Q ss_pred CccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC-CC
Q 008856 433 SLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-GL 511 (551)
Q Consensus 433 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~ 511 (551)
+|+.|++++|. +..+|. .+++|+.|++++ +.+..+|.. ..+|+.|++++ ++++.+|.. ..
T Consensus 383 ~L~~LdLs~N~----Lt~LP~----------l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~ 443 (788)
T PRK15387 383 GLKELIVSGNR----LTSLPV----------LPSELKELMVSG-NRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIH 443 (788)
T ss_pred ccceEEecCCc----ccCCCC----------cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhcc-CcccccChHHhh
Confidence 89999999984 777775 457899999999 789888843 35788999999 679999874 23
Q ss_pred ccccceEeecCCc
Q 008856 512 PSSLLELWISGCP 524 (551)
Q Consensus 512 ~~~L~~L~i~~c~ 524 (551)
+++|+.|++++++
T Consensus 444 L~~L~~LdLs~N~ 456 (788)
T PRK15387 444 LSSETTVNLEGNP 456 (788)
T ss_pred ccCCCeEECCCCC
Confidence 6799999999996
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=3.9e-13 Score=143.90 Aligned_cols=244 Identities=23% Similarity=0.348 Sum_probs=163.7
Q ss_pred CCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCc
Q 008856 194 SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNEL 273 (551)
Q Consensus 194 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 273 (551)
.+...|++++ ..++.+|.. .++.++.|+++++ +++.+ |..+.. +|+.|++++ +.++. +|.. +
T Consensus 178 ~~~~~L~L~~-~~LtsLP~~-Ip~~L~~L~Ls~N-~LtsL--P~~l~~----------nL~~L~Ls~-N~Lts-LP~~-l 239 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIPAC-IPEQITTLILDNN-ELKSL--PENLQG----------NIKTLYANS-NQLTS-IPAT-L 239 (754)
T ss_pred cCceEEEeCC-CCcCcCCcc-cccCCcEEEecCC-CCCcC--Chhhcc----------CCCEEECCC-Ccccc-CChh-h
Confidence 4567777776 355666542 3567888888774 67666 665433 688888887 44555 3332 2
Q ss_pred hhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC
Q 008856 274 PATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG 353 (551)
Q Consensus 274 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 353 (551)
+. +|+.|++++|.. ..++..+. .+|+.|++++ +.+..+|..+. ++|+.|++++| .++.+|.
T Consensus 240 ~~------------~L~~L~Ls~N~L-~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~ 300 (754)
T PRK15370 240 PD------------TIQEMELSINRI-TELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPA 300 (754)
T ss_pred hc------------cccEEECcCCcc-CcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCcc
Confidence 22 588888888854 34444432 4788888886 66777776553 57888888884 6766664
Q ss_pred CCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCC
Q 008856 354 GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFS 432 (551)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 432 (551)
... ++|+.|++++ +.++.+|..+. ++|+.|++++ .+..+|.. .+++|+.|++++|.. ... +.. + .+
T Consensus 301 ~lp--~sL~~L~Ls~-N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L-~~L-P~~---l--p~ 367 (754)
T PRK15370 301 HLP--SGITHLNVQS-NSLTALPETLP--PGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQI-TVL-PET---L--PP 367 (754)
T ss_pred cch--hhHHHHHhcC-CccccCCcccc--ccceeccccCCccccCChh-hcCcccEEECCCCCC-CcC-Chh---h--cC
Confidence 322 3788888887 45666665432 5788888888 77767653 347899999998873 322 221 1 25
Q ss_pred CccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhc----cCCCCcCEEEEcCCC
Q 008856 433 SLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSI----IDLRNLTELVLRGCP 501 (551)
Q Consensus 433 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~l~~L~~L~l~~c~ 501 (551)
+|+.|++++|. +..+|... +.+|+.|++++ +++..+|..+ ..++++..+++.+++
T Consensus 368 ~L~~LdLs~N~----Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 368 TITTLDVSRNA----LTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CcCEEECCCCc----CCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 88999999884 77777643 45789999998 7888776443 335788889998855
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=7.1e-13 Score=141.94 Aligned_cols=244 Identities=20% Similarity=0.294 Sum_probs=180.8
Q ss_pred CCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEecc
Q 008856 217 SSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRY 296 (551)
Q Consensus 217 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~ 296 (551)
.+...|++++. +++.+ |..+.. +++.|++++ ++++. +|...++ +|++|++++
T Consensus 178 ~~~~~L~L~~~-~LtsL--P~~Ip~----------~L~~L~Ls~-N~Lts-LP~~l~~-------------nL~~L~Ls~ 229 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI--PACIPE----------QITTLILDN-NELKS-LPENLQG-------------NIKTLYANS 229 (754)
T ss_pred cCceEEEeCCC-CcCcC--Cccccc----------CCcEEEecC-CCCCc-CChhhcc-------------CCCEEECCC
Confidence 56778888874 67766 765544 699999988 56776 5543332 599999999
Q ss_pred CcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccc
Q 008856 297 CSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALP 376 (551)
Q Consensus 297 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 376 (551)
|. ++.++..+ .++|+.|++++ +.+..+|..+. .+|+.|++++ +.+..+|.... ++|+.|++++| +++.+|
T Consensus 230 N~-LtsLP~~l--~~~L~~L~Ls~-N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 230 NQ-LTSIPATL--PDTIQEMELSI-NRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLP 299 (754)
T ss_pred Cc-cccCChhh--hccccEEECcC-CccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCc
Confidence 85 45555443 35799999999 56778877654 5899999997 57777776432 48999999985 677787
Q ss_pred cccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccc
Q 008856 377 KGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLED 455 (551)
Q Consensus 377 ~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 455 (551)
..+. .+|+.|++++ .+..+|.. .+++|+.|++++|. +..+ +.. + .++|+.|++++|. +..+|..
T Consensus 300 ~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~-Lt~L-P~~---l--~~sL~~L~Ls~N~----L~~LP~~- 364 (754)
T PRK15370 300 AHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENA-LTSL-PAS---L--PPELQVLDVSKNQ----ITVLPET- 364 (754)
T ss_pred ccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCc-cccC-Chh---h--cCcccEEECCCCC----CCcCChh-
Confidence 6543 4789999998 77777653 35799999999997 3322 221 2 2699999999994 7778764
Q ss_pred ccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC-----CCccccceEeecCCch
Q 008856 456 KRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-----GLPSSLLELWISGCPL 525 (551)
Q Consensus 456 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~~ 525 (551)
.+++|+.|++++ +.+..+|..+. ..|+.|++++ +++..+|.. +..+++..+++.+++-
T Consensus 365 --------lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 365 --------LPPTITTLDVSR-NALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --------hcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 357999999999 68888886553 4799999999 568888762 1236789999999874
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.40 E-value=1.6e-14 Score=137.08 Aligned_cols=302 Identities=18% Similarity=0.263 Sum_probs=147.3
Q ss_pred cceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhh
Q 008856 34 LGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQ 113 (551)
Q Consensus 34 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 113 (551)
|+.|++.||....+ .--..+...+|+++.|.+.+|.++++. .....-..+++|++|++..|..+++ ..+
T Consensus 140 lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd~--s~~sla~~C~~l~~l~L~~c~~iT~-------~~L 208 (483)
T KOG4341|consen 140 LKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITDS--SLLSLARYCRKLRHLNLHSCSSITD-------VSL 208 (483)
T ss_pred cccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccHH--HHHHHHHhcchhhhhhhcccchhHH-------HHH
Confidence 56777777765433 111223345777777777777766654 1112223567777777777776665 335
Q ss_pred hhhhccCCCccEEecccCccccc--cccccCCCCCCceEEEccCCCCcc--cCC-CCCCCCCcEEEccCCCCccccchhh
Q 008856 114 QQLCQLSCRLEYLILSYCEGLVK--LPQSSFSLSSLREIEIFKCSSLVS--FPE-VALPSKLKKIQIGECDALKSLPEAW 188 (551)
Q Consensus 114 ~~l~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~--~~~-~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (551)
..++..|++|++|++++|+.+.. +......+..++.+...+|..... +-- .+.++-+..+++..|..+++.....
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 55666777777777777766553 112233344455555555543221 110 1223444445555555555544332
Q ss_pred hhccCCCccEEEEecCCCcceeccc---cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCc
Q 008856 189 MCDTNSSLEILSIHGCRSLTYIAAV---QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLT 265 (551)
Q Consensus 189 ~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 265 (551)
...+...|+.|+.++|..+++.... ...++|+.+.++.|..+++. ++.. -...++.
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~----~ft~----l~rn~~~------------- 347 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR----GFTM----LGRNCPH------------- 347 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh----hhhh----hhcCChh-------------
Confidence 2233355566666655554444322 22345555555555444322 1111 0011233
Q ss_pred ccccCCCchhhhhhccccCCCCCccEEEeccCcchhh--hHhhhcCCCCCcEEEEecCCCcccc-----cccccCCCCcc
Q 008856 266 CIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLES--IAERLDNNTSLETISIYNCENLKIL-----PSGLHKLHQLR 338 (551)
Q Consensus 266 ~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~ 338 (551)
|+.+++..+....+ +...-.+++.|+.+.++.|..+++- ...-..+..|+
T Consensus 348 -----------------------Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~ 404 (483)
T KOG4341|consen 348 -----------------------LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE 404 (483)
T ss_pred -----------------------hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence 55555544443222 2222234566666666655444332 11223345566
Q ss_pred eEEecCCCCCccCCC-CCCCCCCccEEEEccCccccccc--cccccCCcccceec
Q 008856 339 EISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALP--KGLHNLSTLQDLTI 390 (551)
Q Consensus 339 ~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~--~~~~~l~~L~~L~l 390 (551)
.+.+++|+.++.-.. ....+++||.+++.+|..+++-+ ..-.++++++...+
T Consensus 405 ~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 405 VLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred eeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 666666655543211 22234466666666666554322 22345566555443
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=4e-14 Score=134.36 Aligned_cols=300 Identities=15% Similarity=0.155 Sum_probs=154.9
Q ss_pred CccEEEecCCCCchhhcccCcc-hhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-
Q 008856 61 KLEELKINNIQNETCIWKSHNE-LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP- 138 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~- 138 (551)
.|++|.+.||..+.+- +.. +...+|++++|.+.+|.++++ ..+..++..|++|++|++..|..++...
T Consensus 139 ~lk~LSlrG~r~v~~s---slrt~~~~CpnIehL~l~gc~~iTd-------~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS---SLRTFASNCPNIEHLALYGCKKITD-------SSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred ccccccccccccCCcc---hhhHHhhhCCchhhhhhhcceeccH-------HHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 4566666665544432 211 223456666666666654444 2344445555666666666655554221
Q ss_pred -cccCCCCCCceEEEccCCCCccc--CC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceecccc
Q 008856 139 -QSSFSLSSLREIEIFKCSSLVSF--PE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQ 214 (551)
Q Consensus 139 -~~~~~l~~L~~L~l~~c~~l~~~--~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 214 (551)
.-...|++|++|++++|+.++.- .. ...+..++.+...||.....-...... .
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~-----------------------~ 265 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA-----------------------A 265 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh-----------------------c
Confidence 12334555555555555544431 11 111233333433344332221111111 2
Q ss_pred CCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEe
Q 008856 215 LPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRV 294 (551)
Q Consensus 215 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l 294 (551)
..+-+.++++.+|..+++.+++..... +..|+.|..++|..+++ ...+.+.. -..+|+.+.+
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~--------c~~lq~l~~s~~t~~~d-~~l~aLg~---------~~~~L~~l~l 327 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACG--------CHALQVLCYSSCTDITD-EVLWALGQ---------HCHNLQVLEL 327 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhh--------hhHhhhhcccCCCCCch-HHHHHHhc---------CCCceEEEec
Confidence 223344444445544443321111111 33466666666665554 22221111 0125777777
Q ss_pred ccCcchhhh-Hhhh-cCCCCCcEEEEecCCCcccc--cccccCCCCcceEEecCCCCCccC-----CCCCCCCCCccEEE
Q 008856 295 RYCSKLESI-AERL-DNNTSLETISIYNCENLKIL--PSGLHKLHQLREISIGSCGNLVSF-----PGGGLPCAKLTALE 365 (551)
Q Consensus 295 ~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~ 365 (551)
..|..+... ...+ .+++.|+.+++..|..+.+- ...-.+++.|+.+.+++|..+++- .........|+.+.
T Consensus 328 ~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 328 SGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred cccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee
Confidence 777654432 2222 36789999999997655432 233356899999999998766543 33333445899999
Q ss_pred EccCcccccc-ccccccCCcccceeccc--ccccccc---CCcCCCcceeEe
Q 008856 366 IYDCKRLKAL-PKGLHNLSTLQDLTIGG--ALLSLEE---DGLPTNLHSLVI 411 (551)
Q Consensus 366 l~~c~~l~~~-~~~~~~l~~L~~L~l~~--~l~~l~~---~~~~~~L~~L~l 411 (551)
+++|+.++.- -+.+..+++|+.+++.+ ++..-+. ...+|++++..+
T Consensus 408 L~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 408 LDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 9999987653 35567788999988876 3322211 134566666544
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=6.1e-14 Score=132.06 Aligned_cols=257 Identities=15% Similarity=0.192 Sum_probs=131.2
Q ss_pred ccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEeccc
Q 008856 51 LAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSY 130 (551)
Q Consensus 51 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 130 (551)
+|+..++.+++||+|++++ ++++.+ .+.+|..++.|..|.+.+.+++++++.. .+..+ ..|+.|.+.-
T Consensus 82 iP~~aF~~l~~LRrLdLS~-N~Is~I---~p~AF~GL~~l~~Lvlyg~NkI~~l~k~----~F~gL----~slqrLllNa 149 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSK-NNISFI---APDAFKGLASLLSLVLYGNNKITDLPKG----AFGGL----SSLQRLLLNA 149 (498)
T ss_pred CChhhccchhhhceecccc-cchhhc---ChHhhhhhHhhhHHHhhcCCchhhhhhh----HhhhH----HHHHHHhcCh
Confidence 4555555566666666666 556655 5555566666666666555556666553 34444 5555555554
Q ss_pred Ccccccc-ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhc----------cCCCcc
Q 008856 131 CEGLVKL-PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCD----------TNSSLE 197 (551)
Q Consensus 131 ~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~L~ 197 (551)
| .+..+ ...+..+++|..|.+.+ +.+..++. +..+..++.++++.++.+.+=...|... +.....
T Consensus 150 n-~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 150 N-HINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred h-hhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 3 22322 23455666777777666 34555543 3345666666666554221100000000 000000
Q ss_pred EEEEecCCCcceeccccCCCCccEEE---EecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCch
Q 008856 198 ILSIHGCRSLTYIAAVQLPSSLKMLT---IWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELP 274 (551)
Q Consensus 198 ~L~l~~~~~~~~~~~~~~~~~L~~L~---l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 274 (551)
...+.+ ..+..+....+...++.+- .+.|. ++......-|+. +++|+.|++++ ++++. +..+.|-
T Consensus 228 p~rl~~-~Ri~q~~a~kf~c~~esl~s~~~~~d~-------~d~~cP~~cf~~--L~~L~~lnlsn-N~i~~-i~~~aFe 295 (498)
T KOG4237|consen 228 PYRLYY-KRINQEDARKFLCSLESLPSRLSSEDF-------PDSICPAKCFKK--LPNLRKLNLSN-NKITR-IEDGAFE 295 (498)
T ss_pred hHHHHH-HHhcccchhhhhhhHHhHHHhhccccC-------cCCcChHHHHhh--cccceEeccCC-Cccch-hhhhhhc
Confidence 000000 1111111111211222220 01110 111111111111 55788888888 67766 3333222
Q ss_pred hhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecC
Q 008856 275 ATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGS 344 (551)
Q Consensus 275 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~ 344 (551)
. + ..+++|.+..|..-..-...|.++.+|+.|++++ +.++.+ |..+....+|.+|.+-.
T Consensus 296 ~----~------a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 296 G----A------AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred c----h------hhhhhhhcCcchHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehcc
Confidence 2 1 1488888988865555566788899999999999 777776 77777788888888764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=3.3e-13 Score=112.84 Aligned_cols=157 Identities=24% Similarity=0.333 Sum_probs=90.9
Q ss_pred CCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccC-CcCCCcceeEe
Q 008856 334 LHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVI 411 (551)
Q Consensus 334 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l 411 (551)
+.....|.+++ ++++.+|.....+.+|+.|++.+ ++++.+|..++.+++|+.|+++. .+..+|.+ +.+|.|+.||+
T Consensus 32 ~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 34444444444 34444444333333455555544 44555555555555555555555 44444443 44566666666
Q ss_pred cCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCC
Q 008856 412 RGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRN 491 (551)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 491 (551)
.+|..-....+.- |..+..|+-|++++|. ++.+|.+.+ .+++|+.|.+++ +.+-.+|..+..+.+
T Consensus 110 tynnl~e~~lpgn---ff~m~tlralyl~dnd----fe~lp~dvg-------~lt~lqil~lrd-ndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 110 TYNNLNENSLPGN---FFYMTTLRALYLGDND----FEILPPDVG-------KLTNLQILSLRD-NDLLSLPKEIGDLTR 174 (264)
T ss_pred cccccccccCCcc---hhHHHHHHHHHhcCCC----cccCChhhh-------hhcceeEEeecc-CchhhCcHHHHHHHH
Confidence 5555333333322 4456677777777763 667777663 567777777777 677777777777788
Q ss_pred cCEEEEcCCCCccccCC
Q 008856 492 LTELVLRGCPKLKYFPE 508 (551)
Q Consensus 492 L~~L~l~~c~~l~~l~~ 508 (551)
|++|+|.+ ++++-+|.
T Consensus 175 lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 175 LRELHIQG-NRLTVLPP 190 (264)
T ss_pred HHHHhccc-ceeeecCh
Confidence 88888887 56776655
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=8.7e-12 Score=117.77 Aligned_cols=220 Identities=17% Similarity=0.220 Sum_probs=125.2
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 366 (551)
|+.|++++|.+....+++|.++++|.+|-+.+.++++++|. .+..+.+|+.|.+.- +.+..++. ....++++..|.+
T Consensus 93 LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 93 LRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred hceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcc
Confidence 55555555554444555555555555555555555555543 233455555555443 22222222 1222346677777
Q ss_pred ccCcccccccc-ccccCCcccceeccc-c------cccc-------c-----------------------cCCcCCCcce
Q 008856 367 YDCKRLKALPK-GLHNLSTLQDLTIGG-A------LLSL-------E-----------------------EDGLPTNLHS 408 (551)
Q Consensus 367 ~~c~~l~~~~~-~~~~l~~L~~L~l~~-~------l~~l-------~-----------------------~~~~~~~L~~ 408 (551)
.+ +.+..++. .+..+..++.+.+.. . +... + ...+.-.++.
T Consensus 172 yD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es 250 (498)
T KOG4237|consen 172 YD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES 250 (498)
T ss_pred cc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence 66 55666665 455666666665543 1 1000 0 0000001222
Q ss_pred e--EecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hh
Q 008856 409 L--VIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SS 485 (551)
Q Consensus 409 L--~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~ 485 (551)
+ .+......+...|..- +..+++|++|++++|. +..+.+.. |.....+++|.+.. |+++.+. .-
T Consensus 251 l~s~~~~~d~~d~~cP~~c--f~~L~~L~~lnlsnN~----i~~i~~~a------Fe~~a~l~eL~L~~-N~l~~v~~~~ 317 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPAKC--FKKLPNLRKLNLSNNK----ITRIEDGA------FEGAAELQELYLTR-NKLEFVSSGM 317 (498)
T ss_pred HHHhhccccCcCCcChHHH--HhhcccceEeccCCCc----cchhhhhh------hcchhhhhhhhcCc-chHHHHHHHh
Confidence 2 1112222222333332 7789999999999983 66666644 34678999999999 8999887 45
Q ss_pred ccCCCCcCEEEEcCCCCccccCCCCC--ccccceEeecCCc
Q 008856 486 IIDLRNLTELVLRGCPKLKYFPEKGL--PSSLLELWISGCP 524 (551)
Q Consensus 486 ~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 524 (551)
+.++..|++|++++ ++++.+....+ ..+|.+|.+-.+|
T Consensus 318 f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 78899999999999 77888755333 4567777766554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.04 E-value=2.9e-11 Score=119.66 Aligned_cols=130 Identities=21% Similarity=0.219 Sum_probs=63.0
Q ss_pred CccEEEEccCccc----cccccccccCCcccceeccc-cccc-----ccc-CCcCCCcceeEecCCchhhhhhhhhcccc
Q 008856 360 KLTALEIYDCKRL----KALPKGLHNLSTLQDLTIGG-ALLS-----LEE-DGLPTNLHSLVIRGNMEIWKSMIEWGRGF 428 (551)
Q Consensus 360 ~L~~L~l~~c~~l----~~~~~~~~~l~~L~~L~l~~-~l~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 428 (551)
+|+.|++++|... ..++..+..+++|+.|++++ .+.. ++. ....++|++|++++|..-..........+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 5666666654321 12233344555666666655 3321 111 11235777777777763322221111124
Q ss_pred ccCCCccEEEEeccCCCCcccc-----cccccccccccccccccccccccccCCChh-----hhhhhccCCCCcCEEEEc
Q 008856 429 HRFSSLRHLTIDGCDDDTMMVS-----FPLEDKRLGTVLRLPTTLTSLRIEDFPNLE-----RLSSSIIDLRNLTELVLR 498 (551)
Q Consensus 429 ~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L~l~ 498 (551)
..+++|++|++++|. +.. +.... ....+.|++|++++| .++ .+...+..+++|++++++
T Consensus 218 ~~~~~L~~L~ls~n~----l~~~~~~~l~~~~------~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 218 ASLKSLEVLNLGDNN----LTDAGAAALASAL------LSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred cccCCCCEEecCCCc----CchHHHHHHHHHH------hccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECC
Confidence 556777777777762 221 11110 001256777777764 442 223344555677777777
Q ss_pred CC
Q 008856 499 GC 500 (551)
Q Consensus 499 ~c 500 (551)
+|
T Consensus 287 ~N 288 (319)
T cd00116 287 GN 288 (319)
T ss_pred CC
Confidence 73
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=1.7e-10 Score=125.87 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=63.3
Q ss_pred CCCccEEEecCCCC-chhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 59 IPKLEELKINNIQN-ETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
+++|++|-+.+... +..+ ...+|..+|.|++|++++|..+..+|.. ++.+ -+|++|++++ +.+..+
T Consensus 544 ~~~L~tLll~~n~~~l~~i---s~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~-t~I~~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI---SGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSD-TGISHL 610 (889)
T ss_pred CCccceEEEeecchhhhhc---CHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccC-CCcccc
Confidence 45666666666321 3433 4444566666777777666666666654 5555 6666666666 455666
Q ss_pred ccccCCCCCCceEEEccCCCCcccCCCC-CCCCCcEEEccC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPEVA-LPSKLKKIQIGE 177 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~ 177 (551)
|.++.++..|.+|++..+..+..++.+. .+++|++|.+..
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 6666666667777666655555554432 266666666644
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=1.2e-10 Score=115.30 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=34.5
Q ss_pred CccEEEeccCcch----hhhHhhhcCCCCCcEEEEecCCCcccc-----cccccCC-CCcceEEecCC
Q 008856 288 SLKSLRVRYCSKL----ESIAERLDNNTSLETISIYNCENLKIL-----PSGLHKL-HQLREISIGSC 345 (551)
Q Consensus 288 ~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~-~~L~~L~l~~~ 345 (551)
.|++|++++|... ..+...+..+++|+.+++++ +.+..- ...+... +.|+++++.++
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 4778888777543 23344555667888888888 444422 2233334 67787777663
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=4.2e-10 Score=122.82 Aligned_cols=128 Identities=22% Similarity=0.235 Sum_probs=92.0
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCcc-ccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPK-LQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
....++..+.+ +.+..+ +.. ..+++|++|-+.++.. +..++.+ .+..+ |.|+.||+++|..+.++
T Consensus 522 ~~~~rr~s~~~-~~~~~~---~~~--~~~~~L~tLll~~n~~~l~~is~~----ff~~m----~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 522 WNSVRRMSLMN-NKIEHI---AGS--SENPKLRTLLLQRNSDWLLEISGE----FFRSL----PLLRVLDLSGNSSLSKL 587 (889)
T ss_pred hhheeEEEEec-cchhhc---cCC--CCCCccceEEEeecchhhhhcCHH----HHhhC----cceEEEECCCCCccCcC
Confidence 45667777776 455544 322 3466888888887542 5555543 25656 89999999988888889
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEec
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHG 203 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 203 (551)
|..++.+-+||+|+++++ .++.+|. +.++.+|.+|++..+..+..++... ..+++|++|.+..
T Consensus 588 P~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPR 651 (889)
T ss_pred ChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchh--hhcccccEEEeec
Confidence 988999999999999884 6778887 6778889999988877666664431 2247888888876
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.99 E-value=1.6e-11 Score=102.84 Aligned_cols=146 Identities=26% Similarity=0.377 Sum_probs=88.8
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
+..|.+++| .++.++..+..+.+|+.|++++ +.++++|..+.+++.|+.|.+.- +.+..+|.++..+|.|+.|++.+
T Consensus 35 ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccc
Confidence 666667776 3455556666777777777777 66777777777777777777765 56666677666677777777777
Q ss_pred Ccc-ccccccccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 369 CKR-LKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 369 c~~-l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++- -..+|..|..++.|+.|++++ +.+.+|.. +.+.+|+-|.+.+|..+. ...+ +..+.+|++|.|.+|
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpke----ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKE----IGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHH----HHHHHHHHHHhcccc
Confidence 431 234566666677777777766 55555543 444555555555554322 1111 334445555555544
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.72 E-value=7.5e-08 Score=94.64 Aligned_cols=94 Identities=30% Similarity=0.588 Sum_probs=63.5
Q ss_pred hhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcc
Q 008856 306 RLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTL 385 (551)
Q Consensus 306 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L 385 (551)
.+..+.++++|++++| .+..+|. -.++|++|.+++|..++.+|... +++|+.|++++|..+..+|. +|
T Consensus 47 r~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 47 QIEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 3455688999999987 6777762 23469999999998888887533 24899999999877777765 35
Q ss_pred cceeccc-cccccccCCcCCCcceeEecC
Q 008856 386 QDLTIGG-ALLSLEEDGLPTNLHSLVIRG 413 (551)
Q Consensus 386 ~~L~l~~-~l~~l~~~~~~~~L~~L~l~~ 413 (551)
+.|++.. ....++ ..+++|++|.+.+
T Consensus 115 e~L~L~~n~~~~L~--~LPssLk~L~I~~ 141 (426)
T PRK15386 115 RSLEIKGSATDSIK--NVPNGLTSLSINS 141 (426)
T ss_pred ceEEeCCCCCcccc--cCcchHhheeccc
Confidence 5555644 222222 2345677777644
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.5e-09 Score=101.82 Aligned_cols=210 Identities=17% Similarity=0.227 Sum_probs=119.1
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+.+|+...+.+|+-..-. .....+.|++++.|++++ ++-.-|.....+...+|+|+.|+++.+ ++.....+..
T Consensus 120 ~kkL~~IsLdn~~V~~~~---~~~~~k~~~~v~~LdLS~--NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~- 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAG---IEEYSKILPNVRDLDLSR--NLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNT- 192 (505)
T ss_pred HHhhhheeecCccccccc---hhhhhhhCCcceeecchh--hhHHhHHHHHHHHHhcccchhcccccc-cccCCccccc-
Confidence 777888888877644311 113556788888888887 344346666666777888888888874 4554433311
Q ss_pred hhhhhhhccCCCccEEecccCccc-cccccccCCCCCCceEEEccCCCCc-ccCCCCCCCCCcEEEccCCCCccccchhh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGL-VKLPQSSFSLSSLREIEIFKCSSLV-SFPEVALPSKLKKIQIGECDALKSLPEAW 188 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (551)
....++|+.|.+++|..- ..+......||+|+.|++..+..+. ...+...+..|++|+++++..+ +++...
T Consensus 193 ------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~ 265 (505)
T KOG3207|consen 193 ------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGY 265 (505)
T ss_pred ------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccc
Confidence 112378888888887421 2333344567788888887753221 2222344677888888876533 333222
Q ss_pred hhccCCCccEEEEecCCCcceec--c------ccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEec
Q 008856 189 MCDTNSSLEILSIHGCRSLTYIA--A------VQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRY 260 (551)
Q Consensus 189 ~~~~~~~L~~L~l~~~~~~~~~~--~------~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 260 (551)
....++.|..|+++.|. +.++. . ...+++|+.|.+.++ ++..+ ..+.+ ..+.++|++|.+..
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w---~sl~~-----l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDW---RSLNH-----LRTLENLKHLRITL 335 (505)
T ss_pred ccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccC-ccccc---cccch-----hhccchhhhhhccc
Confidence 22444777777777642 22221 1 145678888888774 44332 22221 12245677776554
Q ss_pred CCCCc
Q 008856 261 CPSLT 265 (551)
Q Consensus 261 c~~l~ 265 (551)
+.+.
T Consensus 336 -n~ln 339 (505)
T KOG3207|consen 336 -NYLN 339 (505)
T ss_pred -cccc
Confidence 4443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.2e-09 Score=100.64 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=97.0
Q ss_pred CCCCccEEEecCCCCchhhcccCc-chhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHN-ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK 136 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~ 136 (551)
++.+|+++.+.++ .+... +. +....|++++.|+++.+ -+..+.+ +..+++.+|+|+.|+++.|. +..
T Consensus 119 n~kkL~~IsLdn~-~V~~~---~~~~~~k~~~~v~~LdLS~N-L~~nw~~------v~~i~eqLp~Le~LNls~Nr-l~~ 186 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDA---GIEEYSKILPNVRDLDLSRN-LFHNWFP------VLKIAEQLPSLENLNLSSNR-LSN 186 (505)
T ss_pred hHHhhhheeecCc-ccccc---chhhhhhhCCcceeecchhh-hHHhHHH------HHHHHHhcccchhccccccc-ccC
Confidence 4667777777773 34433 11 23456777777777763 3444422 45555555777777777643 221
Q ss_pred ccc--ccCCCCCCceEEEccCCCCc--ccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcc--e
Q 008856 137 LPQ--SSFSLSSLREIEIFKCSSLV--SFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLT--Y 209 (551)
Q Consensus 137 ~~~--~~~~l~~L~~L~l~~c~~l~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~--~ 209 (551)
... .-..+++|+.|.++.|. ++ ++.. ...+|+|+.|.+++|..+..... .......|+.|+++++..+. .
T Consensus 187 ~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 187 FISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred CccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCccccccc
Confidence 111 11246677777777773 22 1111 33467777777777642211110 00122557777777754332 1
Q ss_pred eccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcc
Q 008856 210 IAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTC 266 (551)
Q Consensus 210 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 266 (551)
++..+.+++|+.|.++.+ .+.++.+|+.-.. ...-++++|++|.+.. +.+.+
T Consensus 264 ~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~---~kt~~f~kL~~L~i~~-N~I~~ 315 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSST-GIASIAEPDVESL---DKTHTFPKLEYLNISE-NNIRD 315 (505)
T ss_pred ccccccccchhhhhcccc-CcchhcCCCccch---hhhcccccceeeeccc-Ccccc
Confidence 233355677777777664 4555544443000 0011255677777776 44433
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.2e-09 Score=98.10 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=92.5
Q ss_pred CccEEEeccCcch-hhhHhhhcCCCCCcEEEEecCCCcc-cccccccCCCCcceEEecCCCCCccCCC--CCCCCCCccE
Q 008856 288 SLKSLRVRYCSKL-ESIAERLDNNTSLETISIYNCENLK-ILPSGLHKLHQLREISIGSCGNLVSFPG--GGLPCAKLTA 363 (551)
Q Consensus 288 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~ 363 (551)
.|++||+++..+. ..+...+..|.+|+.|.+.+ ..+. .+...+.+-.+|+.|+++.|.++++... ....+..|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4777777765432 23445566777777777777 3343 3345566667777777777777765433 3334557777
Q ss_pred EEEccCccccccccc-ccc-CCcccceeccc-----cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCcc
Q 008856 364 LEIYDCKRLKALPKG-LHN-LSTLQDLTIGG-----ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLR 435 (551)
Q Consensus 364 L~l~~c~~l~~~~~~-~~~-l~~L~~L~l~~-----~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 435 (551)
|++++|...+..... +.+ -++|+.|++++ ....+... ..+|+|.+|||++|..+..-.... +..++.|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~---~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---FFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH---HHhcchhe
Confidence 777777543332111 111 25677777777 11222221 357888888888888776432221 66788888
Q ss_pred EEEEeccC
Q 008856 436 HLTIDGCD 443 (551)
Q Consensus 436 ~L~l~~~~ 443 (551)
+|.++.|+
T Consensus 342 ~lSlsRCY 349 (419)
T KOG2120|consen 342 HLSLSRCY 349 (419)
T ss_pred eeehhhhc
Confidence 88888885
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6e-09 Score=95.31 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=28.1
Q ss_pred ccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC---CCCCCCCcEEEccCCC
Q 008856 118 QLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE---VALPSKLKKIQIGECD 179 (551)
Q Consensus 118 ~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~ 179 (551)
..|.+|+.|++.|+.--..+...+..-..|+.|+++.|+.++.... +..++.|.+|++++|.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 3445555555555322222223333344555555555544443332 2335555555555554
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=6.2e-08 Score=84.93 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=39.5
Q ss_pred CCCcEEEEecCCCccccccccc-CCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccccccc-ccCCcccce
Q 008856 311 TSLETISIYNCENLKILPSGLH-KLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGL-HNLSTLQDL 388 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~l~~L~~L 388 (551)
..++.|++++ +.++.+ ..++ .+.+|+.|++++ +.++.+... ..++.|++|++++ +.++++.+.+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~-n~I~~I-e~L~~~l~~L~~L~Ls~-N~I~~l~~l-~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRG-NQISTI-ENLGATLDKLEVLDLSN-NQITKLEGL-PGLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TT-S--S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred cccccccccc-cccccc-cchhhhhcCCCEEECCC-CCCccccCc-cChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence 3455555555 444444 2233 345556666655 344444321 1233566666665 4455554333 246666666
Q ss_pred eccc-cccc---cccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 389 TIGG-ALLS---LEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 389 ~l~~-~l~~---l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++++ .+.. +.....+++|++|++.+|+.-.. ......++..+|+|+.||-...
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 6666 3333 33334578888888888885432 2222223567888888875544
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=8.7e-08 Score=87.90 Aligned_cols=128 Identities=18% Similarity=0.276 Sum_probs=70.2
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEE
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLT 438 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 438 (551)
.|+++++++ +.++.+.++..-.+.++.|+++. .+..+.....+++|+.||+++|.... ...| -..+.|.+.|.
T Consensus 285 ~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~--~~Gw---h~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE--CVGW---HLKLGNIKTLK 358 (490)
T ss_pred hhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh--hhhh---HhhhcCEeeee
Confidence 444455544 33444444444444555555555 44444444445666666666665222 2222 23566777777
Q ss_pred EeccCCCCcccccccccccccccccccccccccccccCCChhhhh--hhccCCCCcCEEEEcCCCCccccC
Q 008856 439 IDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS--SSIIDLRNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 439 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~l~ 507 (551)
+++|- ++.++.-. -+-+|..|++++ |+++.+. ..+.++|.|+++.+.++| ++.++
T Consensus 359 La~N~----iE~LSGL~--------KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 359 LAQNK----IETLSGLR--------KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhhhh----HhhhhhhH--------hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 77662 44444433 345677777777 6666654 456777888888887755 44433
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=4.3e-08 Score=89.87 Aligned_cols=134 Identities=18% Similarity=0.159 Sum_probs=79.2
Q ss_pred ccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccC-CcCCCcce
Q 008856 331 LHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHS 408 (551)
Q Consensus 331 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~ 408 (551)
+.....|+++|+++ +.++.+.......|.++.|++++ +.++.+.. ++.+++|+.|++++ .+..+... ..+.|.+.
T Consensus 280 ~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccc-cchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 34456677777777 56666666656666777777777 44555533 66777777777777 55555443 23567777
Q ss_pred eEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh
Q 008856 409 LVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS 483 (551)
Q Consensus 409 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 483 (551)
|.+.+|..-+- ++ ++.+-+|+.|++++|. .+++.....-. .+|-|+.+.+.+ |-+..++
T Consensus 357 L~La~N~iE~L----SG--L~KLYSLvnLDl~~N~-Ie~ldeV~~IG--------~LPCLE~l~L~~-NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIETL----SG--LRKLYSLVNLDLSSNQ-IEELDEVNHIG--------NLPCLETLRLTG-NPLAGSV 415 (490)
T ss_pred eehhhhhHhhh----hh--hHhhhhheeccccccc-hhhHHHhcccc--------cccHHHHHhhcC-CCccccc
Confidence 77777763221 11 4556677777777762 22222222222 456777777777 4444443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.43 E-value=1.2e-07 Score=83.04 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=32.4
Q ss_pred CCCccEEEecCCCCchhhcccCcchhc-ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQ-DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
..++++|++++ +.++.+ +.++ .+.+|+.|++++| .++.+.. +..+ ++|+.|++++| .+..+
T Consensus 18 ~~~~~~L~L~~-n~I~~I-----e~L~~~l~~L~~L~Ls~N-~I~~l~~------l~~L----~~L~~L~L~~N-~I~~i 79 (175)
T PF14580_consen 18 PVKLRELNLRG-NQISTI-----ENLGATLDKLEVLDLSNN-QITKLEG------LPGL----PRLKTLDLSNN-RISSI 79 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS---S--TT--------------TT--EEE--SS----S-
T ss_pred ccccccccccc-cccccc-----cchhhhhcCCCEEECCCC-CCccccC------ccCh----hhhhhcccCCC-CCCcc
Confidence 45677888887 456655 1233 4677888888875 4776633 5555 78888888874 55556
Q ss_pred cccc-CCCCCCceEEEccCCCCcccCC---CCCCCCCcEEEccCCC
Q 008856 138 PQSS-FSLSSLREIEIFKCSSLVSFPE---VALPSKLKKIQIGECD 179 (551)
Q Consensus 138 ~~~~-~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~ 179 (551)
+..+ ..+++|++|++++ +++..+.. ++.+++|++|++.+|+
T Consensus 80 ~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 5444 3577888888876 45544433 4557888888888766
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=1.2e-08 Score=101.15 Aligned_cols=167 Identities=22% Similarity=0.340 Sum_probs=103.4
Q ss_pred cEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccC
Q 008856 290 KSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDC 369 (551)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 369 (551)
...+++.|. ...++..+..+..|+.+.++. +.+..+|..+..+..|.+++++. +.+..+|.....+ -|+.|-+++
T Consensus 78 ~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sN- 152 (722)
T KOG0532|consen 78 VFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSN- 152 (722)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEec-
Confidence 344566553 345556666667777777777 66778888888888888888888 5677777655545 578888887
Q ss_pred ccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcc
Q 008856 370 KRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMM 448 (551)
Q Consensus 370 ~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 448 (551)
++++.+|+.++.+.+|..|+.+. .+.+++.. +.++.+|+.|.+..|. +
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsq---------------------------l~~l~slr~l~vrRn~----l 201 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ---------------------------LGYLTSLRDLNVRRNH----L 201 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHH---------------------------hhhHHHHHHHHHhhhh----h
Confidence 77888888777777777776665 55555442 3344444444444442 4
Q ss_pred cccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 449 VSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
..+|++. .--.|..||+++ |++..+|..+.+++.|++|.+..+|
T Consensus 202 ~~lp~El--------~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 202 EDLPEEL--------CSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhCCHHH--------hCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC
Confidence 4444433 112355555554 5555555555555555555555533
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=3.2e-06 Score=83.36 Aligned_cols=71 Identities=24% Similarity=0.525 Sum_probs=39.1
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCC
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVA 165 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 165 (551)
.+.+++.|++++| .++.+|. .+++|++|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~------------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV------------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC------------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc---
Confidence 3566666666666 4555442 12456666666666665555433 2456666666665544333
Q ss_pred CCCCCcEEEcc
Q 008856 166 LPSKLKKIQIG 176 (551)
Q Consensus 166 ~~~~L~~L~l~ 176 (551)
++|+.|.+.
T Consensus 112 --~sLe~L~L~ 120 (426)
T PRK15386 112 --ESVRSLEIK 120 (426)
T ss_pred --cccceEEeC
Confidence 345555554
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=7.1e-07 Score=91.03 Aligned_cols=170 Identities=25% Similarity=0.349 Sum_probs=107.3
Q ss_pred CCCCcEEEEecCCCcccccccccCCC-CcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccce
Q 008856 310 NTSLETISIYNCENLKILPSGLHKLH-QLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDL 388 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L 388 (551)
++.++.|.+.+ +.+.+++....... +|+.|++++ +.+..++.....+++|+.|++++ +.+.+++.....++.|+.|
T Consensus 115 ~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhhe
Confidence 35666777766 55666655555553 777777777 45656543334445777777777 4466666655567777777
Q ss_pred eccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccc
Q 008856 389 TIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPT 466 (551)
Q Consensus 389 ~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (551)
++++ .+..++.. +.+..|++|.+++|+....... +..+.++..+.+.++. +..++... ..++
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~-----~~~~~~l~~l~l~~n~----~~~~~~~~-------~~l~ 255 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS-----LSNLKNLSGLELSNNK----LEDLPESI-------GNLS 255 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchh-----hhhcccccccccCCce----eeeccchh-------cccc
Confidence 7777 77777765 3455688888877753332211 4566667777666652 33323322 2456
Q ss_pred cccccccccCCChhhhhhhccCCCCcCEEEEcCC
Q 008856 467 TLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 467 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 500 (551)
++++|++++ +.+.+++. +..+.+|+.+++++.
T Consensus 256 ~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 256 NLETLDLSN-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccceecccc-cccccccc-ccccCccCEEeccCc
Confidence 788888887 67777765 677788888888873
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=9.9e-07 Score=82.95 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=34.4
Q ss_pred CccEEEeccCcchhh----hHhhhcCCCCCcEEEEecCCC---ccccc-------ccccCCCCcceEEecCC
Q 008856 288 SLKSLRVRYCSKLES----IAERLDNNTSLETISIYNCEN---LKILP-------SGLHKLHQLREISIGSC 345 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---l~~~~-------~~~~~~~~L~~L~l~~~ 345 (551)
+++++++++|..-.. +...+...++|+..++++.-. ...+| ..+..++.|++|++|+|
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 478888888865432 344556667777777766310 11222 23345667888888774
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=2.3e-06 Score=87.31 Aligned_cols=189 Identities=24% Similarity=0.276 Sum_probs=137.6
Q ss_pred EEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCC-CccEEEEccCccccccccccccCCcccceeccc-
Q 008856 315 TISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCA-KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG- 392 (551)
Q Consensus 315 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~- 392 (551)
.+.... +.+..-...+..++.++.|++.+ +.+..++....... +|+.|++++ +.+..+|..+..+++|+.|+++.
T Consensus 97 ~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNL-NRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccc-cccccCchhhhcccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc
Confidence 455555 33322223344557889999988 67777777666663 899999998 77888877789999999999999
Q ss_pred cccccccCC-cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccccccc
Q 008856 393 ALLSLEEDG-LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSL 471 (551)
Q Consensus 393 ~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 471 (551)
.+..++... ..++|+.|++++|.... +... ......|+++.++++. . +.....-. ...++..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~----~~~~~~L~~l~~~~N~-~--~~~~~~~~--------~~~~l~~l 237 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISD-LPPE----IELLSALEELDLSNNS-I--IELLSSLS--------NLKNLSGL 237 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCcccc-Cchh----hhhhhhhhhhhhcCCc-c--eecchhhh--------hccccccc
Confidence 888888875 78999999999998433 2221 1234459999999982 2 22232221 45677777
Q ss_pred ccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCc
Q 008856 472 RIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 472 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
.+.+ +.+..++..+..+++++.|++++ +.++.++..+...+++.|++++..
T Consensus 238 ~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 238 ELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCcc
Confidence 7666 77777677788899999999999 678888775556899999998854
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=5.9e-06 Score=59.19 Aligned_cols=59 Identities=29% Similarity=0.408 Sum_probs=35.1
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccC
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYC 131 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~ 131 (551)
|+|++|++++ +.++.+ +...|..+++|++|+++++ .++.+++. .+..+ ++|++|++++|
T Consensus 1 p~L~~L~l~~-n~l~~i---~~~~f~~l~~L~~L~l~~N-~l~~i~~~----~f~~l----~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEI---PPDSFSNLPNLETLDLSNN-NLTSIPPD----AFSNL----PNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETS-STESEE---CTTTTTTGTTESEEEETSS-SESEEETT----TTTTS----TTESEEEETSS
T ss_pred CcCcEEECCC-CCCCcc---CHHHHcCCCCCCEeEccCC-ccCccCHH----HHcCC----CCCCEEeCcCC
Confidence 4566666666 356655 5555666666666666653 46666553 24444 66666666664
No 42
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.04 E-value=5.2e-07 Score=94.69 Aligned_cols=66 Identities=29% Similarity=0.360 Sum_probs=30.0
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc--ccccccCCCCCCceEEEccCCCC
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV--KLPQSSFSLSSLREIEIFKCSSL 158 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l 158 (551)
.+++|+.|++.+|..+++ .++..++..+++|++|.+.+|..++ .+......+++|++|++++|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd-------~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTD-------IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCc-------hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 345555555555443333 2233333344555555555554322 12222334555555555555443
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.01 E-value=3e-07 Score=91.63 Aligned_cols=187 Identities=21% Similarity=0.306 Sum_probs=137.4
Q ss_pred EEecCCCcccccccccC--CCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-c
Q 008856 317 SIYNCENLKILPSGLHK--LHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-A 393 (551)
Q Consensus 317 ~l~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~ 393 (551)
.|++ ..++.+|..-.+ +.--...+++. +.+..+|.....+-.|+.+.+.. +.++.+|+.+.++..|..++++. .
T Consensus 56 ~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsr-NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 56 LLSG-RRLKEFPRGAASYDLTDTVFADLSR-NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccc-chhhcCCCccccccccchhhhhccc-cccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccch
Confidence 3444 445555433222 23334455666 56666776555555777777765 55778888899999999999988 8
Q ss_pred ccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccccccccc
Q 008856 394 LLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRI 473 (551)
Q Consensus 394 l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 473 (551)
+..+|...+.--|+.|.+++|. +....++ +...+.|..|+++.|. +..+|.+.+ .+.+|+.|.+
T Consensus 133 lS~lp~~lC~lpLkvli~sNNk-l~~lp~~----ig~~~tl~~ld~s~ne----i~slpsql~-------~l~slr~l~v 196 (722)
T KOG0532|consen 133 LSHLPDGLCDLPLKVLIVSNNK-LTSLPEE----IGLLPTLAHLDVSKNE----IQSLPSQLG-------YLTSLRDLNV 196 (722)
T ss_pred hhcCChhhhcCcceeEEEecCc-cccCCcc----cccchhHHHhhhhhhh----hhhchHHhh-------hHHHHHHHHH
Confidence 8888887555579999999888 4434444 5577899999999994 888887663 6789999999
Q ss_pred ccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC-CccccceEeecCCch
Q 008856 474 EDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG-LPSSLLELWISGCPL 525 (551)
Q Consensus 474 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~i~~c~~ 525 (551)
+. +.+.++|..+.. -.|.+|+++. +++..+|... -+..|++|-+.++|-
T Consensus 197 rR-n~l~~lp~El~~-LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 197 RR-NHLEDLPEELCS-LPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hh-hhhhhCCHHHhC-Cceeeeeccc-CceeecchhhhhhhhheeeeeccCCC
Confidence 99 899999977764 4588999997 8999999853 367899999999863
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.92 E-value=5.3e-06 Score=78.16 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=77.7
Q ss_pred hhhccCCCCcceEEeCCCCCcc--------ccccccccceeeeccccCcccceec---------cCCcCCCCCCccEEEe
Q 008856 5 VISITSLPALCKMEIGGCKKVV--------WRSATDHLGSQNSVVCRDASNQVFL---------AGPLKPRIPKLEELKI 67 (551)
Q Consensus 5 ~~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~---------~~~~~~~~~~L~~L~l 67 (551)
..|+...|.|++|+|++|-.-. +......|+.|.+.+|......... ...-...-+.||.+..
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 4456666677777777653211 2233555677777776544331111 1111223456666666
Q ss_pred cCCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc----ccccccC
Q 008856 68 NNIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV----KLPQSSF 142 (551)
Q Consensus 68 ~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~----~~~~~~~ 142 (551)
.+ +.+.+- -...+..+...+.|+.+.+..+. +..=...-.+.++. .+++|+.|||+.|..-. .+...+.
T Consensus 165 ~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~----~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 165 GR-NRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALE----HCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred ec-cccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHH----hCCcceeeecccchhhhHHHHHHHHHhc
Confidence 65 333322 00011233455666666666532 32111111112222 33666666666643221 1233455
Q ss_pred CCCCCceEEEccCCCCcccC-----C--CCCCCCCcEEEccCCC
Q 008856 143 SLSSLREIEIFKCSSLVSFP-----E--VALPSKLKKIQIGECD 179 (551)
Q Consensus 143 ~l~~L~~L~l~~c~~l~~~~-----~--~~~~~~L~~L~l~~~~ 179 (551)
.+++|++|++++|. ++.-. . -...|.|+.+.+.+|.
T Consensus 239 s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 239 SWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred ccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 56666666666663 22111 0 1125566666666654
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=2.3e-06 Score=87.55 Aligned_cols=175 Identities=18% Similarity=0.245 Sum_probs=91.8
Q ss_pred hcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCccc
Q 008856 307 LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQ 386 (551)
Q Consensus 307 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 386 (551)
+..+.+|+.|++.+ +.+..+...+..+++|++|++++ +.++.+....... .|+.|++++ +.++.+. .+..++.|+
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~-~L~~L~l~~-N~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLT-LLKELNLSG-NLISDIS-GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheeccc-cccccccchhhcc-chhhheecc-Ccchhcc-CCccchhhh
Confidence 45566666666666 55655533356667777777776 4555544332222 466677766 3444442 344566666
Q ss_pred ceeccc-ccccccc--CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccc
Q 008856 387 DLTIGG-ALLSLEE--DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLR 463 (551)
Q Consensus 387 ~L~l~~-~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (551)
.+++++ .+..++. ...+.+++.+++.+|.....-. +..+..+..+++..+. +..+..-.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~------~~~~~~l~~~~l~~n~----i~~~~~l~-------- 227 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG------LDLLKKLVLLSLLDNK----ISKLEGLN-------- 227 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc------hHHHHHHHHhhccccc----ceeccCcc--------
Confidence 777766 5555544 2455677777777666433111 1222333333444431 22222211
Q ss_pred cccc--ccccccccCCChhhhhhhccCCCCcCEEEEcCCCCcccc
Q 008856 464 LPTT--LTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYF 506 (551)
Q Consensus 464 ~~~~--L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l 506 (551)
.... |+++++.+ +.+..++.++..+++++.+++.. +++..+
T Consensus 228 ~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~ 270 (414)
T KOG0531|consen 228 ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNL 270 (414)
T ss_pred cchhHHHHHHhccc-Cccccccccccccccccccchhh-cccccc
Confidence 1122 66666666 56665544555666666666665 444443
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.86 E-value=2.3e-06 Score=89.84 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=56.1
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccC-ccccccc----cccCCCCCCceEEEccCCCCcc
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYC-EGLVKLP----QSSFSLSSLREIEIFKCSSLVS 160 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-~~l~~~~----~~~~~l~~L~~L~l~~c~~l~~ 160 (551)
.++.|+.|.+.+|..+... ++..+...+++|+.|+++++ ......+ .....+++|+.|+++.|..++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDD-------SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred hCchhhHhhhcccccCChh-------hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 3566666666665544431 12222233366666666552 1111111 1233445666666666554443
Q ss_pred cCC---CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCc
Q 008856 161 FPE---VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL 207 (551)
Q Consensus 161 ~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 207 (551)
... ...+++|+.|.+.+|..+++..........++|++|++++|..+
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 221 12256666666666665444443333334456667776666655
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=2e-05 Score=56.40 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=38.7
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCC
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSC 345 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~ 345 (551)
+|++|++++|.........|.++++|++|++++ +.+..+ +..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 477777777744333345667777788888876 566666 446677777777777775
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=9e-07 Score=90.67 Aligned_cols=123 Identities=24% Similarity=0.340 Sum_probs=92.2
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCC-CCCCCccEEEEc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGG-LPCAKLTALEIY 367 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~ 367 (551)
|...++++|. +..+-..+.-++.+++|+++. +++.++ ..+..++.|++||+++ +.+..+|... ..+ .|..|.++
T Consensus 166 L~~a~fsyN~-L~~mD~SLqll~ale~LnLsh-Nk~~~v-~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNR-LVLMDESLQLLPALESLNLSH-NKFTKV-DNLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred Hhhhhcchhh-HHhHHHHHHHHHHhhhhccch-hhhhhh-HHHHhccccccccccc-chhccccccchhhh-hheeeeec
Confidence 5555666663 344445566778999999999 778777 4788899999999999 6777777633 334 69999999
Q ss_pred cCccccccccccccCCcccceeccc----cccccccCCcCCCcceeEecCCchhh
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG----ALLSLEEDGLPTNLHSLVIRGNMEIW 418 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~----~l~~l~~~~~~~~L~~L~l~~~~~~~ 418 (551)
+ +.++.+ .++.++++|+.|++++ +-..+...+.+..|++|+|.||+...
T Consensus 241 n-N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 241 N-NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred c-cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8 567766 4588999999999998 33334444567899999999999543
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=2.8e-05 Score=83.40 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=58.5
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
.+|++|+++|...+..-| +...-.-+|.|+.|.+.+- .+.. +.+..+...+|+|..||+++ .++..+ .
T Consensus 122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~-~~~~-------~dF~~lc~sFpNL~sLDIS~-TnI~nl-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGR-QFDN-------DDFSQLCASFPNLRSLDISG-TNISNL-S 189 (699)
T ss_pred HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCc-eecc-------hhHHHHhhccCccceeecCC-CCccCc-H
Confidence 466677776644444334 2222234677777777662 2322 22444455557777777776 344444 4
Q ss_pred ccCCCCCCceEEEccCCCCc--ccCCCCCCCCCcEEEccCCC
Q 008856 140 SSFSLSSLREIEIFKCSSLV--SFPEVALPSKLKKIQIGECD 179 (551)
Q Consensus 140 ~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~L~~L~l~~~~ 179 (551)
++.++++|+.|.+.+.+... .+-.+..+++|+.|++|+..
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 66667777777666543221 12224456677777776543
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.51 E-value=1.5e-05 Score=81.50 Aligned_cols=192 Identities=20% Similarity=0.228 Sum_probs=119.6
Q ss_pred CCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccce
Q 008856 309 NNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDL 388 (551)
Q Consensus 309 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L 388 (551)
.+..++.+.++. +.+..+-..+..+++|+.+++.+ +.++.+......+++|++|++++ +.++.+ .++..++.|+.|
T Consensus 70 ~l~~l~~l~l~~-n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQ-NLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccch-hhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccc-cccccc-cchhhccchhhh
Confidence 445556666666 55555434467788999999998 56666555334455899999998 667776 347778889999
Q ss_pred eccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccc
Q 008856 389 TIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTT 467 (551)
Q Consensus 389 ~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (551)
++.+ .++.+.....+++|+.+++++|+.-..-. . . ...+.+++.++++++. +..+.... ....
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~-~--~-~~~~~~l~~l~l~~n~----i~~i~~~~--------~~~~ 209 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIEN-D--E-LSELISLEELDLGGNS----IREIEGLD--------LLKK 209 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhhhhh-h--h-hhhccchHHHhccCCc----hhcccchH--------HHHH
Confidence 9988 77777777668899999999988443221 0 0 1467788888888883 33333221 2233
Q ss_pred ccccccccCCChhhhhhhccCCCC--cCEEEEcCCCCcccc-CCCCCccccceEeecCC
Q 008856 468 LTSLRIEDFPNLERLSSSIIDLRN--LTELVLRGCPKLKYF-PEKGLPSSLLELWISGC 523 (551)
Q Consensus 468 L~~L~l~~~~~l~~~~~~~~~l~~--L~~L~l~~c~~l~~l-~~~~~~~~L~~L~i~~c 523 (551)
+..+.+.. +.+..+ .++..+.. |+++++.+ +.+..+ .......++..+++.+.
T Consensus 210 l~~~~l~~-n~i~~~-~~l~~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 210 LVLLSLLD-NKISKL-EGLNELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHhhccc-ccceec-cCcccchhHHHHHHhccc-Cccccccccccccccccccchhhc
Confidence 44444444 444433 23333333 88899988 445554 22223345555555543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=0.0001 Score=79.11 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=88.2
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccc-cccccccCCCCCCceEEEccCCCCcccCCC
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGL-VKLPQSSFSLSSLREIEIFKCSSLVSFPEV 164 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 164 (551)
+-.+|++|++++...+.. +|....+..+|+|++|.+++-... ..+..-..+|++|..||++++ +++.+..+
T Consensus 120 sr~nL~~LdI~G~~~~s~-------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GI 191 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSN-------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGI 191 (699)
T ss_pred HHHhhhhcCccccchhhc-------cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHH
Confidence 346899999998554433 567777778899999999983221 134455678999999999995 67777667
Q ss_pred CCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCccee--c-----cccCCCCccEEEEec
Q 008856 165 ALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI--A-----AVQLPSSLKMLTIWY 226 (551)
Q Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-----~~~~~~~L~~L~l~~ 226 (551)
+.+++|+.|.+.+-. +...........+++|+.||++.-.....- . -...+|+|+.||.++
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 889999999886532 222221111133488999999874332221 0 114468888888876
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.31 E-value=9.1e-06 Score=83.56 Aligned_cols=102 Identities=26% Similarity=0.299 Sum_probs=50.8
Q ss_pred CCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhh
Q 008856 403 PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL 482 (551)
Q Consensus 403 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 482 (551)
++.|+.|+|+.|..-+.- . +..++.|++||+++|- +..+|.-.+ ---.|+.|.+++ |-++.+
T Consensus 186 l~ale~LnLshNk~~~v~--~----Lr~l~~LkhLDlsyN~----L~~vp~l~~-------~gc~L~~L~lrn-N~l~tL 247 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--N----LRRLPKLKHLDLSYNC----LRHVPQLSM-------VGCKLQLLNLRN-NALTTL 247 (1096)
T ss_pred HHHhhhhccchhhhhhhH--H----HHhcccccccccccch----hccccccch-------hhhhheeeeecc-cHHHhh
Confidence 455555666665532211 1 4455666666666552 444443110 111366666666 555555
Q ss_pred hhhccCCCCcCEEEEcCCCCccccCCC---CCccccceEeecCCc
Q 008856 483 SSSIIDLRNLTELVLRGCPKLKYFPEK---GLPSSLLELWISGCP 524 (551)
Q Consensus 483 ~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~ 524 (551)
- ++.++.+|+.|++++ |-+....+. ..+..|++|++.|+|
T Consensus 248 ~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 248 R-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 3 555666666666666 444443331 123456666666654
No 53
>PLN03150 hypothetical protein; Provisional
Probab=97.27 E-value=0.00065 Score=73.10 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=70.4
Q ss_pred CccEEeecCCcccc-ccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-CCC
Q 008856 89 SLKRLTITSCPKLQ-SLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE-VAL 166 (551)
Q Consensus 89 ~L~~L~l~~~~~l~-~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~ 166 (551)
.++.|+|+++. +. .+++. +..+ ++|+.|+|++|.....+|..+..+++|+.|+++++..-..+|. ++.
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~-----i~~L----~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPND-----ISKL----RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEEECCCCC-ccccCCHH-----HhCC----CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 36778888754 54 33332 6666 8888888888654447777788888888888888533334554 667
Q ss_pred CCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCc
Q 008856 167 PSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL 207 (551)
Q Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 207 (551)
+++|+.|++++|.-...+|.... ....++..+++.++..+
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCCEEECcCCcccccCChHHh-hccccCceEEecCCccc
Confidence 88888888888764445555422 11144567777776543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.00067 Score=62.92 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=56.1
Q ss_pred CCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh
Q 008856 404 TNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS 483 (551)
Q Consensus 404 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 483 (551)
+.++.|..-+|......... +.-+-+|++..+.+..|+ ++....+- .+..++.+-.|.+.. +++.+..
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~P----lK~~s~ek-----~se~~p~~~~LnL~~-~~idswa 240 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEGP----LKTESSEK-----GSEPFPSLSCLNLGA-NNIDSWA 240 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecCc----ccchhhcc-----cCCCCCcchhhhhcc-cccccHH
Confidence 46666666677633211111 113467899999999884 44433211 011345666777776 5666543
Q ss_pred --hhccCCCCcCEEEEcCCCCccccCC
Q 008856 484 --SSIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 484 --~~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
+.+..|++|..|.+...|....+..
T Consensus 241 svD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred HHHHHcCCchhheeeccCCcccccccC
Confidence 5677899999999998886666543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.19 E-value=0.00037 Score=45.75 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=30.7
Q ss_pred ccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccC
Q 008856 466 TTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 466 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 507 (551)
++|++|++++ ++++++|..+.++++|++|++++| .++.++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888 788888876889999999999995 576654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.12 E-value=0.00059 Score=44.76 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=14.9
Q ss_pred CccEEecccCccccccccccCCCCCCceEEEcc
Q 008856 122 RLEYLILSYCEGLVKLPQSSFSLSSLREIEIFK 154 (551)
Q Consensus 122 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~ 154 (551)
+|++|++++| .+..+|..+.++++|++|++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecC
Confidence 4455555552 3344444455555555555555
No 57
>PLN03150 hypothetical protein; Provisional
Probab=97.12 E-value=0.00069 Score=72.92 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=61.0
Q ss_pred CcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc
Q 008856 313 LETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 313 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~ 392 (551)
++.|+++++.--..+|..+..+++|+.|++++|.-...+|.....+++|+.|++++|.-...+|+.+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666332234466666677777777776533335555444555777777776544445666677777777777766
Q ss_pred -ccc-ccccC--CcCCCcceeEecCCchh
Q 008856 393 -ALL-SLEED--GLPTNLHSLVIRGNMEI 417 (551)
Q Consensus 393 -~l~-~l~~~--~~~~~L~~L~l~~~~~~ 417 (551)
.+. .+|.. ....++..+++.+|+.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 333 33332 12245567777777643
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00038 Score=64.48 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=88.6
Q ss_pred CCcceEEeCCCCCcc------ccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhc
Q 008856 12 PALCKMEIGGCKKVV------WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQ 85 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 85 (551)
..++++++.++.... +...+|+|+.|+++..+........|. +..+|+.|.+.| +.+. |......+.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~----p~~nl~~lVLNg-T~L~--w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL----PLKNLRVLVLNG-TGLS--WTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc----cccceEEEEEcC-CCCC--hhhhhhhhh
Confidence 456677777766555 222366677777766555544333331 356777777777 5666 666666666
Q ss_pred ccCCccEEeecCCcccccc--chhhhhhhhhhhhccCCCccEEecccCcccc--ccccccCCCCCCceEEEccCCCCccc
Q 008856 86 DICSLKRLTITSCPKLQSL--VAEEEKDQQQQLCQLSCRLEYLILSYCEGLV--KLPQSSFSLSSLREIEIFKCSSLVSF 161 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l--~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~~ 161 (551)
.+|+++.|.++.++ +..+ .+.. ... .-+.+++|.+.+|.... ..-.-..-||++..+-+..|+--+.-
T Consensus 144 ~lP~vtelHmS~N~-~rq~n~Dd~c----~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s 215 (418)
T KOG2982|consen 144 DLPKVTELHMSDNS-LRQLNLDDNC----IED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTES 215 (418)
T ss_pred cchhhhhhhhccch-hhhhcccccc----ccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchh
Confidence 67777777666642 2211 1110 000 01344555555543211 11112234566666666665422111
Q ss_pred CC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCC
Q 008856 162 PE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRS 206 (551)
Q Consensus 162 ~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 206 (551)
.. ...+|.+--|+++.+ ++.+....-...++++|..|.+.+.+-
T Consensus 216 ~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 216 SEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcc
Confidence 11 223455555566552 243333222224456677777666543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.81 E-value=0.0026 Score=55.89 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=74.4
Q ss_pred CCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhh
Q 008856 403 PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL 482 (551)
Q Consensus 403 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 482 (551)
.-+...+|+.+|....... +..+++|..|.+..|. |..+....+ .++++|..|.+.+ |+++++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNr----It~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l 103 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNR----ITRIDPDLD------TFLPNLKTLILTN-NSIQEL 103 (233)
T ss_pred ccccceecccccchhhccc------CCCccccceEEecCCc----ceeeccchh------hhccccceEEecC-cchhhh
Confidence 3466778888887443211 5677889999998883 777766442 3677899999999 888887
Q ss_pred h--hhccCCCCcCEEEEcCCCCccccCCCC-----CccccceEeecCCc
Q 008856 483 S--SSIIDLRNLTELVLRGCPKLKYFPEKG-----LPSSLLELWISGCP 524 (551)
Q Consensus 483 ~--~~~~~l~~L~~L~l~~c~~l~~l~~~~-----~~~~L~~L~i~~c~ 524 (551)
. ..+..+|+|+.|.+-+++ ++....+. ..|+|+.||..+=.
T Consensus 104 ~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 104 GDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 5 567788999999999844 65554432 15788888888653
No 60
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0012 Score=58.02 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=60.2
Q ss_pred CccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-c
Q 008856 61 KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP-Q 139 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~ 139 (551)
.++.++-+++ .+... ....+..++.++.|.+.+|..+.+ ..+..+....++|+.|+|++|+.+++-. .
T Consensus 102 ~IeaVDAsds-~I~~e---Gle~L~~l~~i~~l~l~~ck~~dD-------~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYE---GLEHLRDLRSIKSLSLANCKYFDD-------WCLERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred eEEEEecCCc-hHHHH---HHHHHhccchhhhheeccccchhh-------HHHHHhcccccchheeeccCCCeechhHHH
Confidence 4667777773 44433 444566788888888888887776 3456666677888888888888777543 4
Q ss_pred ccCCCCCCceEEEccCCCC
Q 008856 140 SSFSLSSLREIEIFKCSSL 158 (551)
Q Consensus 140 ~~~~l~~L~~L~l~~c~~l 158 (551)
.+..+++|+.|.+.+.+.+
T Consensus 171 ~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHHhhhhHHHHhcCchhh
Confidence 5677788888888765433
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.01 E-value=0.0088 Score=52.65 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=50.0
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccE
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRH 436 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 436 (551)
+...+++++ +.+..+ ..+.+++.|.+|.+.+ .+..+.+. ..+|+|+.|.+.+|..-. ...--+ +..+++|++
T Consensus 43 ~~d~iDLtd-Ndl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~p--La~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTD-NDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDP--LASCPKLEY 117 (233)
T ss_pred ccceecccc-cchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcch--hccCCccce
Confidence 667777777 344444 2366777888888877 77766654 456778888887777332 111111 556777777
Q ss_pred EEEecc
Q 008856 437 LTIDGC 442 (551)
Q Consensus 437 L~l~~~ 442 (551)
|.+-+|
T Consensus 118 Ltll~N 123 (233)
T KOG1644|consen 118 LTLLGN 123 (233)
T ss_pred eeecCC
Confidence 777777
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.87 E-value=0.0025 Score=58.45 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=19.0
Q ss_pred CCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 403 PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 403 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
||.|+..++++|.......+..+..+++...|++|.+++|
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 4555555555555433222222222445555556655555
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.71 E-value=0.006 Score=56.08 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=81.5
Q ss_pred CccEEEeccCcchhh----hHhhhcCCCCCcEEEEecCCC----------cccccccccCCCCcceEEecCCCCCccCCC
Q 008856 288 SLKSLRVRYCSKLES----IAERLDNNTSLETISIYNCEN----------LKILPSGLHKLHQLREISIGSCGNLVSFPG 353 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~----------l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 353 (551)
.+.++++++|.+-+. +...+.+-.+|+..+++..-- +..+...+.+||.|+.++++++---..+|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 488889999876554 344455567777777765310 111123455788999999988533333332
Q ss_pred ----CCCCCCCccEEEEccCccccccc-----cc---------cccCCcccceeccc-cccccccC------CcCCCcce
Q 008856 354 ----GGLPCAKLTALEIYDCKRLKALP-----KG---------LHNLSTLQDLTIGG-ALLSLEED------GLPTNLHS 408 (551)
Q Consensus 354 ----~~~~~~~L~~L~l~~c~~l~~~~-----~~---------~~~l~~L~~L~l~~-~l~~l~~~------~~~~~L~~ 408 (551)
.....+.|++|.+++|. +..+. .. ..+-|.|+...... .+...+.. .+-.+|++
T Consensus 111 ~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred HHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 11223478888888753 32221 11 12345666666555 33332211 01136777
Q ss_pred eEecCCchhhhh---hhhhccccccCCCccEEEEecc
Q 008856 409 LVIRGNMEIWKS---MIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 409 L~l~~~~~~~~~---~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+.+.+|..-... ....+ +..+.+|+.|++.+|
T Consensus 190 vki~qNgIrpegv~~L~~~g--l~y~~~LevLDlqDN 224 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLG--LFYSHSLEVLDLQDN 224 (388)
T ss_pred EEeeecCcCcchhHHHHHHH--HHHhCcceeeecccc
Confidence 777766643221 11111 455677777777766
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.70 E-value=0.0015 Score=53.63 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=61.0
Q ss_pred CcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhh
Q 008856 405 NLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS 484 (551)
Q Consensus 405 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 484 (551)
.+..++|+.|+.......... +..-..|..+++++| + +..||+.+ .+.++.++.|.+++ +.+.++|.
T Consensus 28 E~h~ldLssc~lm~i~davy~--l~~~~el~~i~ls~N--~--fk~fp~kf------t~kf~t~t~lNl~~-neisdvPe 94 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYM--LSKGYELTKISLSDN--G--FKKFPKKF------TIKFPTATTLNLAN-NEISDVPE 94 (177)
T ss_pred HhhhcccccchhhHHHHHHHH--HhCCceEEEEecccc--h--hhhCCHHH------hhccchhhhhhcch-hhhhhchH
Confidence 455677788874421111111 445567777888887 4 88888865 23566888888888 88888887
Q ss_pred hccCCCCcCEEEEcCCCCccccCC
Q 008856 485 SIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 485 ~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
.+...|.|+.|+++.++ +...|.
T Consensus 95 E~Aam~aLr~lNl~~N~-l~~~p~ 117 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNP-LNAEPR 117 (177)
T ss_pred HHhhhHHhhhcccccCc-cccchH
Confidence 78888899999998854 444443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.001 Score=61.11 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=41.8
Q ss_pred ccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhh
Q 008856 33 HLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQ 112 (551)
Q Consensus 33 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 112 (551)
+.+.|+..||...+. ++...++.|+.|.++- ++++.+ ..+..|.+|+.|.|..+ .+.++.+- ..
T Consensus 20 ~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSv-NkIssL-----~pl~rCtrLkElYLRkN-~I~sldEL---~Y 83 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI------SICEKMPLLEVLSLSV-NKISSL-----APLQRCTRLKELYLRKN-CIESLDEL---EY 83 (388)
T ss_pred HhhhhcccCCCccHH------HHHHhcccceeEEeec-cccccc-----hhHHHHHHHHHHHHHhc-ccccHHHH---HH
Confidence 344555555543321 1223456666666665 455544 33456666666666653 35555443 33
Q ss_pred hhhhhccCCCccEEecccCc
Q 008856 113 QQQLCQLSCRLEYLILSYCE 132 (551)
Q Consensus 113 ~~~l~~~~~~L~~L~L~~~~ 132 (551)
+.++ |+|+.|.|..|+
T Consensus 84 Lknl----psLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNL----PSLRTLWLDENP 99 (388)
T ss_pred HhcC----chhhhHhhccCC
Confidence 4444 666666666554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.21 E-value=0.012 Score=54.03 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=26.1
Q ss_pred cccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 384 TLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 384 ~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
.|+.|++.+ .+.++.....+|+|+.|.++.|........... ...+++|++|++++|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGN 101 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCC
Confidence 344444444 333333333456666666666632111111111 334466666666666
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.09 E-value=0.0021 Score=52.82 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=67.7
Q ss_pred ccEEEeccCcch--hhhHhhhcCCCCCcEEEEecCCCccccccccc-CCCCcceEEecCCCCCccCCCCCCCCCCccEEE
Q 008856 289 LKSLRVRYCSKL--ESIAERLDNNTSLETISIYNCENLKILPSGLH-KLHQLREISIGSCGNLVSFPGGGLPCAKLTALE 365 (551)
Q Consensus 289 L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 365 (551)
+..++++.|... ...+..+.....|+..++++ +.++++|..+. .++.++.+.+++ +.+.++|...-.+|.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 556677776432 22333444556677777777 67777765543 456777777777 57777776655666777777
Q ss_pred EccCccccccccccccCCcccceeccc-ccccccc
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEE 399 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~ 399 (551)
++. +.+...|..+..+.+|-.|+..+ .+..++.
T Consensus 107 l~~-N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 107 LRF-NPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccc-CccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 777 44555666666676766666655 4444443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.05 E-value=0.13 Score=42.78 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=52.0
Q ss_pred cCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccC
Q 008856 52 AGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYC 131 (551)
Q Consensus 52 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~ 131 (551)
+...+..+.+|+.+.+.+ .++.+ ....|..+++|+.+.+.+ .+..++.. .+... ++++.+.+..
T Consensus 4 ~~~~F~~~~~l~~i~~~~--~~~~I---~~~~F~~~~~l~~i~~~~--~~~~i~~~----~F~~~----~~l~~i~~~~- 67 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN--TIKKI---GENAFSNCTSLKSINFPN--NLTSIGDN----AFSNC----KSLESITFPN- 67 (129)
T ss_dssp -TTTTTT-TT--EEEETS--T--EE----TTTTTT-TT-SEEEESS--TTSCE-TT----TTTT-----TT-EEEEETS-
T ss_pred CHHHHhCCCCCCEEEECC--CeeEe---Chhhcccccccccccccc--ccccccee----eeecc----cccccccccc-
Confidence 334455677888888775 56666 666677777888888876 36666553 24433 6778888754
Q ss_pred cccccccc-ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccC
Q 008856 132 EGLVKLPQ-SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGE 177 (551)
Q Consensus 132 ~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~ 177 (551)
.+..++. .+..+++|+.+++.. .+..++. +..+ +|+.+.+.+
T Consensus 68 -~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 68 -NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred -cccccccccccccccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 3333433 345577788777754 2444443 3344 666666643
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.87 E-value=0.011 Score=54.27 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=41.3
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
.+.+|+.|++.++ .++.+ ..+-.+++|++|.++.+. ..-. .++.-++..+|+|++|++++|. +..+
T Consensus 41 ~~~~le~ls~~n~-gltt~-----~~~P~Lp~LkkL~lsdn~-~~~~------~~l~vl~e~~P~l~~l~ls~Nk-i~~l 106 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTL-----TNFPKLPKLKKLELSDNY-RRVS------GGLEVLAEKAPNLKVLNLSGNK-IKDL 106 (260)
T ss_pred cccchhhhhhhcc-ceeec-----ccCCCcchhhhhcccCCc-cccc------ccceehhhhCCceeEEeecCCc-cccc
Confidence 3566666666663 23322 223456677777777642 1111 1244445555777777777643 2211
Q ss_pred c--cccCCCCCCceEEEccC
Q 008856 138 P--QSSFSLSSLREIEIFKC 155 (551)
Q Consensus 138 ~--~~~~~l~~L~~L~l~~c 155 (551)
. ..+..+.+|..|++.+|
T Consensus 107 stl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cccchhhhhcchhhhhcccC
Confidence 1 12334445555555554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.0024 Score=58.86 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=26.5
Q ss_pred CCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCC
Q 008856 143 SLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCR 205 (551)
Q Consensus 143 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 205 (551)
.|+.|+.|.|+- ++++++.++..|++|++|.+.. +.+.++.+.....++++|+.|.+..++
T Consensus 39 kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeec-cccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCC
Confidence 344444444443 3444444444444444444444 223444333333334555555554433
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.01 Score=52.26 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=38.9
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-------cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCC
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-------ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFS 432 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-------~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 432 (551)
.++.++-+++.....-.+.+..++.++.|.+.+ .++.+.. ..++|+.|+|++|+.+++....+ +..++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~---L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLAC---LLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHH---HHHhh
Confidence 566666666443322223334444444444433 2222222 34566666666666666555444 45555
Q ss_pred CccEEEEec
Q 008856 433 SLRHLTIDG 441 (551)
Q Consensus 433 ~L~~L~l~~ 441 (551)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 666555544
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.91 E-value=0.27 Score=40.80 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=44.5
Q ss_pred CCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCc
Q 008856 53 GPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCE 132 (551)
Q Consensus 53 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 132 (551)
...+..+++|+.+++.+ .++.+ +...+..++.|+.+.+.+ .+..++.. .+... ++|+.+++...
T Consensus 28 ~~~F~~~~~l~~i~~~~--~~~~i---~~~~F~~~~~l~~i~~~~--~~~~i~~~----~F~~~----~~l~~i~~~~~- 91 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPN--NLTSI---GDNAFSNCKSLESITFPN--NLKSIGDN----AFSNC----TNLKNIDIPSN- 91 (129)
T ss_dssp TTTTTT-TT-SEEEESS--TTSCE----TTTTTT-TT-EEEEETS--TT-EE-TT----TTTT-----TTECEEEETTT-
T ss_pred hhhcccccccccccccc--ccccc---ceeeeecccccccccccc--cccccccc----ccccc----ccccccccCcc-
Confidence 33344577888888876 36666 556677777888888865 35555543 24434 78888888652
Q ss_pred ccccccc-ccCCCCCCceEEEcc
Q 008856 133 GLVKLPQ-SSFSLSSLREIEIFK 154 (551)
Q Consensus 133 ~l~~~~~-~~~~l~~L~~L~l~~ 154 (551)
+..++. .+.++ +|+.+.+.+
T Consensus 92 -~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 92 -ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp --BEEHTTTTTT--T--EEE-TT
T ss_pred -ccEEchhhhcCC-CceEEEECC
Confidence 344443 45555 777777653
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.22 E-value=0.1 Score=28.26 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=13.3
Q ss_pred CccEEEEccCcccccccccccc
Q 008856 360 KLTALEIYDCKRLKALPKGLHN 381 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~ 381 (551)
+|++|++++| .++.+|+.+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677777776 56667665543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.62 E-value=0.15 Score=25.65 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=7.6
Q ss_pred CCcCEEEEcCCCCccccC
Q 008856 490 RNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 490 ~~L~~L~l~~c~~l~~l~ 507 (551)
++|++|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356666666654 55543
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.07 E-value=0.14 Score=27.66 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.7
Q ss_pred ccEEeecCC
Q 008856 90 LKRLTITSC 98 (551)
Q Consensus 90 L~~L~l~~~ 98 (551)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444443
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.85 E-value=1 Score=25.43 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=7.8
Q ss_pred CCccEEeecCCccccc
Q 008856 88 CSLKRLTITSCPKLQS 103 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~ 103 (551)
++|++|++++|.++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4455555555544443
No 77
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.15 E-value=1.8 Score=44.45 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=45.8
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCC--CCCCceEEEccCCCCcccC
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFS--LSSLREIEIFKCSSLVSFP 162 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~--l~~L~~L~l~~c~~l~~~~ 162 (551)
.+.+.+..++++++ ++..+ +++..+++..|+|+.|+|++|.....-..++.. ...|++|-+.|++-.+.+.
T Consensus 215 ~n~p~i~sl~lsnN-rL~~L------d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHL------DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred cCCcceeeeecccc-hhhch------hhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 35778888888884 57776 447777888899999999886333222222222 3457777777766555443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=63.46 E-value=5.1 Score=22.38 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=10.9
Q ss_pred CCccEEeecCCccccccchh
Q 008856 88 CSLKRLTITSCPKLQSLVAE 107 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~ 107 (551)
++|++|++.++ .++.+|+.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45666666664 46666554
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=63.46 E-value=5.1 Score=22.38 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=10.9
Q ss_pred CCccEEeecCCccccccchh
Q 008856 88 CSLKRLTITSCPKLQSLVAE 107 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~ 107 (551)
++|++|++.++ .++.+|+.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45666666664 46666554
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=53.90 E-value=8.3 Score=21.84 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=12.6
Q ss_pred CCcCEEEEcCCCCccccCC
Q 008856 490 RNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 490 ~~L~~L~l~~c~~l~~l~~ 508 (551)
++|+.|++++ ++++++|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4577777777 56777766
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=43.01 E-value=0.67 Score=48.03 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=32.8
Q ss_pred chhhhhccCCCCcceEEeCCCCCcc-----ccccc----cccceeeeccccCcccceeccCCcCCCCCCccEEEecC
Q 008856 2 QRIVISITSLPALCKMEIGGCKKVV-----WRSAT----DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINN 69 (551)
Q Consensus 2 ~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 69 (551)
+.+..++...++|..|+++++..-. +...+ ..+++|++..|...................++.++++.
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~ 181 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSL 181 (478)
T ss_pred HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHh
Confidence 3455667777777777777765432 11111 22455555555554443322211112244555555544
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=39.02 E-value=26 Score=18.95 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=8.6
Q ss_pred CccEEEeccCcchhhh
Q 008856 288 SLKSLRVRYCSKLESI 303 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~ 303 (551)
+|++|++++|..-...
T Consensus 3 ~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 3 NLETLDLSNNQITDEG 18 (24)
T ss_dssp T-SEEE-TSSBEHHHH
T ss_pred CCCEEEccCCcCCHHH
Confidence 4777777777644433
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=35.60 E-value=33 Score=19.41 Aligned_cols=16 Identities=44% Similarity=0.463 Sum_probs=9.8
Q ss_pred CCcCEEEEcCCCCcccc
Q 008856 490 RNLTELVLRGCPKLKYF 506 (551)
Q Consensus 490 ~~L~~L~l~~c~~l~~l 506 (551)
.+|+.|++++ ++++.+
T Consensus 2 ~~L~~L~L~~-NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQ-NKIKKI 17 (26)
T ss_pred CccCEEECCC-Ccccee
Confidence 4566666666 556555
No 84
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=33.78 E-value=32 Score=18.15 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=11.4
Q ss_pred ccEEEecCCCCchhhccc
Q 008856 62 LEELKINNIQNETCIWKS 79 (551)
Q Consensus 62 L~~L~l~~~~~l~~~~~~ 79 (551)
|.+|++.+ ++++.+|++
T Consensus 2 LVeL~m~~-S~lekLW~G 18 (20)
T PF07725_consen 2 LVELNMPY-SKLEKLWEG 18 (20)
T ss_pred cEEEECCC-CChHHhcCc
Confidence 56677776 677777654
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.80 E-value=16 Score=37.96 Aligned_cols=80 Identities=20% Similarity=0.102 Sum_probs=41.8
Q ss_pred CCCccEEEEccCcccccc---ccccccCCcccceeccc---cccccccC--CcCCCcceeEecCCchhhh---hhhhhcc
Q 008856 358 CAKLTALEIYDCKRLKAL---PKGLHNLSTLQDLTIGG---ALLSLEED--GLPTNLHSLVIRGNMEIWK---SMIEWGR 426 (551)
Q Consensus 358 ~~~L~~L~l~~c~~l~~~---~~~~~~l~~L~~L~l~~---~l~~l~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~ 426 (551)
.|.+..+.+++ +++..+ .......++|+.|+|++ .+.+-+.. .....|++|.+.||+.-+. .......
T Consensus 217 ~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 217 FPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred Ccceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 34677777777 444333 22234567788888877 22222221 1224677888888774321 1111111
Q ss_pred ccccCCCccEEE
Q 008856 427 GFHRFSSLRHLT 438 (551)
Q Consensus 427 ~~~~l~~L~~L~ 438 (551)
+-..+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 133677777766
No 86
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=30.82 E-value=90 Score=20.08 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=15.5
Q ss_pred CCcCEEEEcCCCCccccCCCCCccccceEeecC
Q 008856 490 RNLTELVLRGCPKLKYFPEKGLPSSLLELWISG 522 (551)
Q Consensus 490 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 522 (551)
+++++|.+.+.. =+.+....+|++++.|.+..
T Consensus 12 ~~l~~L~~g~~f-n~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSSF-NQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCcc-CccCCCCccCCCceEEEeeC
Confidence 345555553321 12233344566677666543
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=26.27 E-value=3.7 Score=42.66 Aligned_cols=119 Identities=20% Similarity=0.142 Sum_probs=59.6
Q ss_pred cccceeeeccccCcccceeccCCcC----CCCCCccEEEecCCCCchhhcccCcchhcccCC-ccEEeecCCccccccch
Q 008856 32 DHLGSQNSVVCRDASNQVFLAGPLK----PRIPKLEELKINNIQNETCIWKSHNELLQDICS-LKRLTITSCPKLQSLVA 106 (551)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~l~~ 106 (551)
..++.+++..+.............. .+..++++|++++|......-......+...+. ++.|++..+. +.+...
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~ 250 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGV 250 (478)
T ss_pred cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHH
Confidence 4455555555555433222221111 135677778887765322111111223445555 6668887743 443211
Q ss_pred hhhhhhhhhhhccC-CCccEEecccCccccc----cccccCCCCCCceEEEccC
Q 008856 107 EEEKDQQQQLCQLS-CRLEYLILSYCEGLVK----LPQSSFSLSSLREIEIFKC 155 (551)
Q Consensus 107 ~~~~~~~~~l~~~~-~~L~~L~L~~~~~l~~----~~~~~~~l~~L~~L~l~~c 155 (551)
. .-...+ ..+ +.+++++++.|+.... +...+..+++++++.+++.
T Consensus 251 ~---~L~~~l-~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 251 E---KLLPCL-SVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred H---HHHHHh-cccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 1 112222 122 5668888888754432 3345556778888888764
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=23.93 E-value=4.9 Score=36.71 Aligned_cols=82 Identities=20% Similarity=0.128 Sum_probs=41.1
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE- 163 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~- 163 (551)
.++...+.||++.+ ++..+... +..+ +.|.+|+++. +.+..+|+.+.....+++++..+ ++.+..|.
T Consensus 39 ~~~kr~tvld~~s~-r~vn~~~n-----~s~~----t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s 106 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSN-RLVNLGKN-----FSIL----TRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS 106 (326)
T ss_pred hccceeeeehhhhh-HHHhhccc-----hHHH----HHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc
Confidence 45555566666553 23333222 3333 5556666665 34455555555555555555544 34444443
Q ss_pred CCCCCCCcEEEccCC
Q 008856 164 VALPSKLKKIQIGEC 178 (551)
Q Consensus 164 ~~~~~~L~~L~l~~~ 178 (551)
.+..+++++++..++
T Consensus 107 ~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKT 121 (326)
T ss_pred ccccCCcchhhhccC
Confidence 344555665555543
Done!