Query 008856
Match_columns 551
No_of_seqs 213 out of 2785
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 13:19:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.7E-35 9.2E-40 324.0 25.0 246 288-548 443-766 (768)
2 3vq2_A TLR4, TOLL-like recepto 100.0 8.5E-33 2.9E-37 297.0 30.9 446 12-524 32-556 (606)
3 3rgz_A Protein brassinosteroid 100.0 4.7E-33 1.6E-37 306.1 25.4 467 4-524 69-549 (768)
4 3t6q_A CD180 antigen; protein- 100.0 4.2E-32 1.4E-36 291.6 31.2 454 13-524 34-558 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1E-31 3.5E-36 288.6 31.1 429 7-501 51-556 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 4.4E-31 1.5E-35 287.5 31.7 223 288-524 382-620 (680)
7 3t6q_A CD180 antigen; protein- 100.0 8E-31 2.7E-35 281.6 33.3 192 15-228 15-213 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-30 5.4E-35 283.1 32.5 469 7-523 44-594 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 2.1E-30 7.3E-35 276.3 24.9 445 12-524 28-529 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-29 1.3E-33 277.8 35.7 220 288-524 291-537 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-29 4.1E-34 269.2 28.7 450 12-524 26-508 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-29 4.3E-34 281.7 27.3 455 12-524 24-558 (844)
13 2z7x_B TOLL-like receptor 1, v 100.0 7.4E-30 2.5E-34 268.9 21.6 446 15-524 3-479 (520)
14 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-29 1.5E-33 264.8 27.7 440 6-501 44-508 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 8.8E-29 3E-33 263.8 29.7 473 15-550 10-526 (570)
16 4eco_A Uncharacterized protein 100.0 7.6E-29 2.6E-33 266.6 19.0 373 100-527 194-633 (636)
17 4eco_A Uncharacterized protein 100.0 8.1E-28 2.8E-32 258.5 24.0 345 132-525 193-599 (636)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.9E-28 3E-32 255.3 21.2 448 14-524 33-508 (562)
19 4ecn_A Leucine-rich repeat pro 100.0 2.2E-27 7.5E-32 259.8 22.3 344 133-525 436-839 (876)
20 4ecn_A Leucine-rich repeat pro 99.9 8E-27 2.7E-31 255.4 24.4 364 113-527 444-873 (876)
21 2z7x_B TOLL-like receptor 1, v 99.9 1E-26 3.6E-31 244.8 23.4 428 12-501 21-479 (520)
22 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-25 5.2E-30 241.8 30.9 217 289-524 351-578 (635)
23 1o6v_A Internalin A; bacterial 99.9 4.7E-25 1.6E-29 228.7 26.7 346 59-507 45-391 (466)
24 1jl5_A Outer protein YOPM; leu 99.9 1.9E-25 6.5E-30 229.8 19.6 195 288-524 216-427 (454)
25 1o6v_A Internalin A; bacterial 99.9 1.5E-24 5E-29 225.0 26.2 348 31-454 45-393 (466)
26 4g8a_A TOLL-like receptor 4; l 99.9 2.8E-24 9.7E-29 231.9 28.7 439 13-501 53-578 (635)
27 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5E-29 224.5 24.6 360 27-442 25-405 (455)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.5E-24 1.9E-28 226.1 25.3 429 11-501 51-508 (562)
29 1jl5_A Outer protein YOPM; leu 99.9 2.2E-24 7.6E-29 221.8 20.4 369 59-524 10-407 (454)
30 3o6n_A APL1; leucine-rich repe 99.9 2.3E-23 7.9E-28 210.9 24.3 311 59-424 44-359 (390)
31 4fmz_A Internalin; leucine ric 99.9 2.2E-23 7.6E-28 207.6 22.8 145 59-227 43-187 (347)
32 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-23 7.2E-28 214.7 22.6 95 121-226 106-200 (457)
33 4fmz_A Internalin; leucine ric 99.9 4.2E-23 1.4E-27 205.5 24.1 124 85-226 41-164 (347)
34 3v47_A TOLL-like receptor 5B a 99.9 1.9E-23 6.6E-28 216.1 22.4 366 60-501 30-406 (455)
35 3oja_B Anopheles plasmodium-re 99.9 2.8E-22 9.6E-27 214.1 23.9 311 59-424 50-365 (597)
36 3bz5_A Internalin-J, INLJ; leu 99.9 3.1E-22 1E-26 206.1 22.7 256 58-392 40-295 (457)
37 3o6n_A APL1; leucine-rich repe 99.9 1.5E-22 5.2E-27 204.8 19.4 302 31-392 44-348 (390)
38 3ogk_B Coronatine-insensitive 99.9 2.5E-23 8.6E-28 222.6 12.5 300 31-368 72-412 (592)
39 2id5_A Lingo-1, leucine rich r 99.9 3.8E-21 1.3E-25 200.0 27.4 293 32-392 32-329 (477)
40 3oja_B Anopheles plasmodium-re 99.9 3.9E-21 1.3E-25 205.3 21.4 302 31-392 50-354 (597)
41 2p1m_B Transport inhibitor res 99.9 3.1E-22 1.1E-26 214.2 12.1 437 15-499 46-540 (594)
42 2id5_A Lingo-1, leucine rich r 99.9 2.7E-20 9.1E-25 193.6 26.2 297 60-424 32-340 (477)
43 3ogk_B Coronatine-insensitive 99.9 8E-23 2.7E-27 218.7 6.9 399 7-442 68-523 (592)
44 2p1m_B Transport inhibitor res 99.8 1.1E-21 3.7E-26 210.1 8.9 400 56-502 62-518 (594)
45 1xku_A Decorin; proteoglycan, 99.8 2.7E-19 9.2E-24 176.6 23.7 295 61-442 32-329 (330)
46 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-19 3.9E-24 179.4 18.4 80 360-442 242-330 (332)
47 1xku_A Decorin; proteoglycan, 99.8 5.9E-19 2E-23 174.2 23.5 284 32-391 31-327 (330)
48 1z7x_W Ribonuclease inhibitor; 99.8 2.2E-21 7.6E-26 200.9 5.1 385 60-524 3-438 (461)
49 2ft3_A Biglycan; proteoglycan, 99.8 4E-19 1.4E-23 175.5 19.7 102 288-391 218-328 (332)
50 4fcg_A Uncharacterized protein 99.8 1.2E-19 4E-24 178.7 14.7 194 289-499 106-310 (328)
51 1z7x_W Ribonuclease inhibitor; 99.8 6.7E-22 2.3E-26 204.8 -3.7 159 12-179 3-181 (461)
52 4fcg_A Uncharacterized protein 99.8 2.1E-19 7.3E-24 176.8 14.0 217 288-522 82-310 (328)
53 2z80_A TOLL-like receptor 2, v 99.8 2.4E-18 8.3E-23 171.5 17.4 223 288-524 77-312 (353)
54 1ogq_A PGIP-2, polygalacturona 99.8 6.6E-19 2.2E-23 172.3 12.6 221 288-526 77-304 (313)
55 3zyj_A Leucine-rich repeat-con 99.8 5.2E-18 1.8E-22 174.3 18.1 197 288-501 89-290 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 7.4E-18 2.5E-22 173.8 18.0 197 288-501 100-301 (452)
57 2z80_A TOLL-like receptor 2, v 99.8 2.9E-17 9.8E-22 163.6 21.2 249 60-345 52-311 (353)
58 3g06_A SSPH2 (leucine-rich rep 99.8 5E-17 1.7E-21 172.3 23.3 131 289-442 163-294 (622)
59 1ogq_A PGIP-2, polygalacturona 99.8 7.3E-18 2.5E-22 164.8 14.9 174 288-479 126-304 (313)
60 3g06_A SSPH2 (leucine-rich rep 99.7 7.4E-17 2.5E-21 171.0 22.5 253 61-392 41-293 (622)
61 3o53_A Protein LRIM1, AGAP0063 99.7 6.8E-18 2.3E-22 165.4 12.5 172 194-392 99-271 (317)
62 2z66_A Variable lymphocyte rec 99.7 1.4E-17 4.7E-22 162.5 13.9 125 289-415 54-186 (306)
63 3zyi_A Leucine-rich repeat-con 99.7 1.6E-16 5.4E-21 163.8 20.4 111 60-185 75-188 (452)
64 3zyj_A Leucine-rich repeat-con 99.7 1.9E-16 6.5E-21 162.6 20.6 128 60-203 64-194 (440)
65 1ozn_A Reticulon 4 receptor; N 99.7 8.7E-17 3E-21 155.1 16.1 197 288-501 33-236 (285)
66 2z66_A Variable lymphocyte rec 99.7 7.4E-17 2.5E-21 157.3 15.5 102 289-392 80-184 (306)
67 3o53_A Protein LRIM1, AGAP0063 99.7 4.4E-17 1.5E-21 159.7 11.1 183 289-500 60-247 (317)
68 3oja_A Leucine-rich immune mol 99.7 1.2E-16 4.1E-21 165.8 14.8 244 113-391 26-270 (487)
69 2xwt_C Thyrotropin receptor; s 99.7 9.6E-17 3.3E-21 150.5 12.5 200 288-526 32-239 (239)
70 1ozn_A Reticulon 4 receptor; N 99.7 1.9E-16 6.4E-21 152.8 11.4 171 289-475 58-234 (285)
71 3oja_A Leucine-rich immune mol 99.7 2.3E-16 7.8E-21 163.7 11.5 184 289-500 60-247 (487)
72 1wwl_A Monocyte differentiatio 99.7 1.1E-17 3.7E-22 163.6 0.8 196 309-524 93-307 (312)
73 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 4.2E-20 142.9 14.3 150 288-442 56-215 (239)
74 4ay9_X Follicle-stimulating ho 99.6 6.2E-15 2.1E-19 146.4 16.6 218 252-499 31-255 (350)
75 1wwl_A Monocyte differentiatio 99.6 4.6E-16 1.6E-20 152.0 6.7 247 217-504 43-309 (312)
76 1p9a_G Platelet glycoprotein I 99.6 1.1E-14 3.7E-19 140.5 16.0 192 250-475 9-204 (290)
77 1p9a_G Platelet glycoprotein I 99.6 4.3E-15 1.5E-19 143.3 12.9 192 288-501 11-206 (290)
78 2z62_A TOLL-like receptor 4, v 99.6 3.9E-15 1.3E-19 142.7 12.4 195 288-501 29-235 (276)
79 2o6q_A Variable lymphocyte rec 99.6 2.1E-14 7.3E-19 137.0 15.9 193 288-501 17-216 (270)
80 2z62_A TOLL-like receptor 4, v 99.6 2E-14 6.7E-19 137.8 14.8 194 311-522 28-233 (276)
81 1h6u_A Internalin H; cell adhe 99.6 8E-15 2.7E-19 142.8 12.0 192 288-508 42-234 (308)
82 4ay9_X Follicle-stimulating ho 99.6 3.9E-14 1.3E-18 140.7 16.8 218 288-523 31-256 (350)
83 1h6u_A Internalin H; cell adhe 99.6 1.1E-14 3.6E-19 141.9 11.8 193 250-483 40-233 (308)
84 4glp_A Monocyte differentiatio 99.6 1.6E-14 5.3E-19 141.0 12.3 223 289-524 66-305 (310)
85 2o6q_A Variable lymphocyte rec 99.5 8.2E-14 2.8E-18 133.0 15.6 170 289-475 39-214 (270)
86 2ast_B S-phase kinase-associat 99.5 9.7E-16 3.3E-20 151.4 1.1 57 289-345 120-178 (336)
87 4glp_A Monocyte differentiatio 99.5 1.7E-14 5.8E-19 140.8 9.5 195 289-501 93-305 (310)
88 2ast_B S-phase kinase-associat 99.5 1E-14 3.5E-19 144.0 6.2 57 289-345 224-282 (336)
89 2ca6_A RAN GTPase-activating p 99.5 3.1E-14 1E-18 143.5 5.2 80 289-370 218-314 (386)
90 3rfs_A Internalin B, repeat mo 99.4 5.7E-13 1.9E-17 127.2 12.5 145 289-442 65-215 (272)
91 2ca6_A RAN GTPase-activating p 99.4 1.1E-14 3.9E-19 146.6 0.4 135 360-505 160-317 (386)
92 3rfs_A Internalin B, repeat mo 99.4 6.8E-13 2.3E-17 126.7 12.3 169 289-500 43-215 (272)
93 3m19_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 123.8 12.9 61 429-500 128-189 (251)
94 3goz_A Leucine-rich repeat-con 99.4 2E-13 6.7E-18 136.2 6.2 40 60-104 22-66 (362)
95 1h6t_A Internalin B; cell adhe 99.4 7E-13 2.4E-17 127.8 9.6 164 311-500 46-210 (291)
96 3m19_A Variable lymphocyte rec 99.4 2.8E-12 9.6E-17 120.8 13.4 148 288-442 36-189 (251)
97 1h6t_A Internalin B; cell adhe 99.4 1.5E-12 5.3E-17 125.4 10.7 169 331-524 42-211 (291)
98 3goz_A Leucine-rich repeat-con 99.4 1.6E-13 5.6E-18 136.8 3.6 225 286-524 21-295 (362)
99 3cvr_A Invasion plasmid antige 99.3 7.1E-12 2.4E-16 131.2 13.5 131 252-415 60-191 (571)
100 3cvr_A Invasion plasmid antige 99.3 8.7E-12 3E-16 130.5 13.4 181 288-501 60-241 (571)
101 4ezg_A Putative uncharacterize 99.3 1E-11 3.6E-16 112.2 11.3 149 31-204 43-191 (197)
102 4ezg_A Putative uncharacterize 99.3 8.4E-12 2.9E-16 112.9 10.6 128 307-442 62-191 (197)
103 1m9s_A Internalin B; cell inva 99.3 9.4E-12 3.2E-16 131.7 10.7 175 307-508 39-214 (605)
104 1m9s_A Internalin B; cell inva 99.3 6.5E-12 2.2E-16 133.0 9.1 169 288-483 44-213 (605)
105 1xeu_A Internalin C; cellular 99.2 4.9E-12 1.7E-16 119.9 5.9 118 289-415 21-139 (263)
106 3e6j_A Variable lymphocyte rec 99.2 1.3E-10 4.4E-15 107.7 13.9 146 15-179 22-170 (229)
107 3e6j_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 108.1 12.4 126 288-416 41-171 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.2 2E-10 6.9E-15 105.6 14.0 148 15-179 14-164 (220)
109 2v9t_B SLIT homolog 2 protein 99.2 2.5E-10 8.4E-15 105.0 14.4 128 60-204 32-162 (220)
110 1xeu_A Internalin C; cellular 99.2 1.2E-10 4.1E-15 110.3 12.0 147 288-453 42-189 (263)
111 2xot_A Amphoterin-induced prot 99.2 5.6E-11 1.9E-15 118.3 9.8 153 290-453 21-180 (361)
112 2v9t_B SLIT homolog 2 protein 99.2 2.5E-10 8.6E-15 105.0 12.7 126 288-416 33-164 (220)
113 2o6s_A Variable lymphocyte rec 99.2 5.7E-10 1.9E-14 101.7 14.8 145 60-227 28-175 (208)
114 2o6s_A Variable lymphocyte rec 99.1 1.3E-10 4.6E-15 105.8 10.0 125 288-415 29-159 (208)
115 3sb4_A Hypothetical leucine ri 99.1 3.1E-10 1.1E-14 111.4 13.2 77 431-521 225-305 (329)
116 2xot_A Amphoterin-induced prot 99.1 1E-10 3.6E-15 116.3 9.9 169 220-415 21-200 (361)
117 2ell_A Acidic leucine-rich nuc 99.1 2.3E-10 7.7E-15 100.5 7.8 132 360-507 25-163 (168)
118 3sb4_A Hypothetical leucine ri 99.1 3.3E-09 1.1E-13 104.0 16.5 107 288-399 203-314 (329)
119 2v70_A SLIT-2, SLIT homolog 2 99.1 7.7E-10 2.6E-14 101.7 11.2 124 289-415 34-164 (220)
120 1dce_A Protein (RAB geranylger 99.0 2.3E-12 7.8E-17 135.6 -7.7 117 360-496 442-566 (567)
121 2ell_A Acidic leucine-rich nuc 99.0 2.7E-10 9.3E-15 99.9 6.4 135 310-453 23-164 (168)
122 1dce_A Protein (RAB geranylger 99.0 1.3E-12 4.5E-17 137.4 -10.3 105 385-508 443-550 (567)
123 2je0_A Acidic leucine-rich nuc 99.0 5.3E-10 1.8E-14 95.9 5.7 13 430-442 86-98 (149)
124 4fdw_A Leucine rich hypothetic 99.0 1.5E-08 5.2E-13 101.7 17.1 212 288-524 158-381 (401)
125 2je0_A Acidic leucine-rich nuc 98.9 3.1E-10 1.1E-14 97.4 3.7 125 311-440 17-148 (149)
126 4fs7_A Uncharacterized protein 98.9 1.4E-07 4.8E-12 94.8 21.1 63 52-129 63-125 (394)
127 1a9n_A U2A', U2A'; complex (nu 98.9 1.5E-09 5.3E-14 95.9 5.8 57 466-524 88-151 (176)
128 1a9n_A U2A', U2A'; complex (nu 98.9 5.6E-09 1.9E-13 92.3 8.9 103 60-179 42-151 (176)
129 2wfh_A SLIT homolog 2 protein 98.9 2E-08 6.8E-13 90.1 12.5 104 60-179 31-137 (193)
130 4b8c_D Glucose-repressible alc 98.8 5.3E-09 1.8E-13 113.5 9.7 158 12-186 173-334 (727)
131 4fdw_A Leucine rich hypothetic 98.8 5.3E-07 1.8E-11 90.4 21.9 166 58-260 111-280 (401)
132 2o6r_A Variable lymphocyte rec 98.8 3.8E-08 1.3E-12 86.9 12.1 105 60-179 28-135 (177)
133 1w8a_A SLIT protein; signaling 98.8 2.2E-08 7.6E-13 89.7 10.3 105 60-179 29-137 (192)
134 4b8c_D Glucose-repressible alc 98.8 1.4E-09 4.9E-14 117.9 2.6 113 302-417 215-329 (727)
135 4fs7_A Uncharacterized protein 98.7 9.8E-07 3.3E-11 88.6 21.7 300 51-408 85-392 (394)
136 4gt6_A Cell surface protein; l 98.7 4.1E-06 1.4E-10 84.0 25.6 321 52-442 55-388 (394)
137 2wfh_A SLIT homolog 2 protein 98.7 6.2E-08 2.1E-12 86.8 10.7 78 288-368 32-111 (193)
138 1w8a_A SLIT protein; signaling 98.7 6.2E-08 2.1E-12 86.8 9.6 78 289-368 31-111 (192)
139 1ds9_A Outer arm dynein; leuci 98.7 5E-10 1.7E-14 101.2 -4.5 87 326-415 39-126 (198)
140 1ds9_A Outer arm dynein; leuci 98.7 8.9E-10 3E-14 99.5 -2.9 145 289-438 25-180 (198)
141 2o6r_A Variable lymphocyte rec 98.6 1.9E-07 6.6E-12 82.3 11.0 79 288-368 29-109 (177)
142 4gt6_A Cell surface protein; l 98.6 1.1E-05 3.8E-10 80.8 24.6 300 51-414 78-388 (394)
143 3e4g_A ATP synthase subunit S, 98.6 4.9E-08 1.7E-12 84.6 5.3 90 60-160 61-154 (176)
144 2r9u_A Variable lymphocyte rec 98.4 9.8E-07 3.4E-11 77.4 9.3 99 63-179 15-116 (174)
145 3g39_A Variable lymphocyte rec 98.4 1.2E-06 4.1E-11 76.6 9.5 100 62-179 11-113 (170)
146 3g39_A Variable lymphocyte rec 98.4 1.2E-06 4.1E-11 76.5 9.4 83 59-155 29-112 (170)
147 2r9u_A Variable lymphocyte rec 98.3 2.1E-06 7.3E-11 75.3 9.2 79 288-368 34-114 (174)
148 3e4g_A ATP synthase subunit S, 98.3 8.2E-07 2.8E-11 76.9 5.8 89 33-136 62-154 (176)
149 3un9_A NLR family member X1; l 98.2 2.4E-07 8.2E-12 92.0 1.9 165 31-205 71-250 (372)
150 4h09_A Hypothetical leucine ri 98.2 0.00024 8.3E-09 70.5 23.6 78 59-154 45-122 (379)
151 2ra8_A Uncharacterized protein 98.2 1.7E-06 5.7E-11 85.3 7.0 35 465-500 278-317 (362)
152 4h09_A Hypothetical leucine ri 98.2 0.00012 4.2E-09 72.7 20.0 287 50-400 59-350 (379)
153 2ifg_A High affinity nerve gro 98.1 9.3E-06 3.2E-10 79.8 9.5 101 64-179 12-114 (347)
154 3un9_A NLR family member X1; l 98.1 1.3E-06 4.5E-11 86.7 2.9 160 11-185 71-255 (372)
155 2ra8_A Uncharacterized protein 98.0 1.3E-05 4.4E-10 78.9 8.6 34 288-321 280-317 (362)
156 2ifg_A High affinity nerve gro 97.9 2.7E-05 9.2E-10 76.5 8.7 90 51-155 24-113 (347)
157 1io0_A Tropomodulin; LRR prote 97.5 6E-05 2E-09 66.6 4.0 91 59-155 64-161 (185)
158 1io0_A Tropomodulin; LRR prote 97.2 0.00013 4.4E-09 64.4 2.2 117 57-179 33-162 (185)
159 3rw6_A Nuclear RNA export fact 96.7 0.0015 5.2E-08 60.8 5.0 82 85-175 167-258 (267)
160 3rw6_A Nuclear RNA export fact 96.6 0.0011 3.6E-08 61.8 3.6 59 119-179 168-231 (267)
161 1pgv_A TMD-1, tropomodulin TMD 91.5 0.16 5.5E-06 44.5 4.2 87 59-154 69-166 (197)
162 3rfe_A Platelet glycoprotein I 90.5 0.18 6E-06 41.1 3.4 37 464-501 29-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 90.5 0.33 1.1E-05 42.5 5.3 41 86-131 68-108 (197)
164 3rfe_A Platelet glycoprotein I 89.9 0.47 1.6E-05 38.5 5.5 33 61-97 32-64 (130)
165 2lz0_A Uncharacterized protein 45.7 22 0.00076 26.8 4.1 42 51-97 11-52 (100)
166 2lz0_A Uncharacterized protein 21.3 1.3E+02 0.0044 22.5 4.6 41 80-130 12-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-35 Score=323.97 Aligned_cols=246 Identities=18% Similarity=0.103 Sum_probs=160.3
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|++|++++|.....++..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|.....+++|+.|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 57777777776655666677777777777777744333556777777778888887765444566555556678888888
Q ss_pred cCccccccccccccCCcccceeccc-ccc-cccc----------------------------------------------
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALL-SLEE---------------------------------------------- 399 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~-~l~~---------------------------------------------- 399 (551)
+|.....+|..+.++++|+.|++++ .+. .+|.
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 7665556777777788888887776 222 1211
Q ss_pred -------------------------CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccc
Q 008856 400 -------------------------DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLE 454 (551)
Q Consensus 400 -------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 454 (551)
...+++|++|++++|..... .+.. +..+++|+.|++++|. - ...+|..
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~---l~~l~~L~~L~Ls~N~-l--~g~ip~~ 675 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKE---IGSMPYLFILNLGHND-I--SGSIPDE 675 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC-CCGG---GGGCTTCCEEECCSSC-C--CSCCCGG
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCccccc-CCHH---HhccccCCEEeCcCCc-c--CCCCChH
Confidence 11246788888888874432 2332 6788889999999883 2 2366665
Q ss_pred cccccccccccccccccccccCCChh-hhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCchH----HHH
Q 008856 455 DKRLGTVLRLPTTLTSLRIEDFPNLE-RLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPLI----EEK 529 (551)
Q Consensus 455 ~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l----~~~ 529 (551)
. ..+++|+.|++++ |++. .+|..+..+++|++|++++|+.-..+|..+...++....+.+|+.+ -..
T Consensus 676 l-------~~L~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~ 747 (768)
T 3rgz_A 676 V-------GDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747 (768)
T ss_dssp G-------GGCTTCCEEECCS-SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCC
T ss_pred H-------hCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcC
Confidence 5 3678899999999 5665 6788888999999999999765567777666667777777776532 227
Q ss_pred hhccCcccccccCccccee
Q 008856 530 CRKDGGQYWDLLTHIPLVA 548 (551)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~ 548 (551)
|...++++|++++|+|++.
T Consensus 748 C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 748 CDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCSCC--------------
T ss_pred CCCCccCCCCCCCCccccC
Confidence 8889999999999999864
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.5e-33 Score=296.99 Aligned_cols=446 Identities=16% Similarity=0.131 Sum_probs=299.2
Q ss_pred CCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
++|++|+++++....++. .+++|+.|++.++... .+++..+..+++|++|++++ +.++.+ ++..+..+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~-n~l~~~---~p~~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTG-NPIQSF---SPGSFSGL 103 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTT-CCCCCC---CTTSSTTC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCC-Cccccc---ChhhcCCc
Confidence 578888888887666544 3667888888877543 34444456688888888888 456655 55667788
Q ss_pred CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-ccccccCCCCCCceEEEccCCCCcccCC--C
Q 008856 88 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-KLPQSSFSLSSLREIEIFKCSSLVSFPE--V 164 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~ 164 (551)
++|++|++++| .+..+++. .++.+ ++|++|++++|.... .+|..+.++++|++|+++++ .++.+++ +
T Consensus 104 ~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 173 (606)
T 3vq2_A 104 TSLENLVAVET-KLASLESF----PIGQL----ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDL 173 (606)
T ss_dssp TTCCEEECTTS-CCCCSSSS----CCTTC----TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTT
T ss_pred ccCCEEEccCC-cccccccc----ccCCC----CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhh
Confidence 88888888886 47666643 25555 888888888864332 46777888888888888874 4555443 2
Q ss_pred CCCCC----CcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcc--------------------------------
Q 008856 165 ALPSK----LKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLT-------------------------------- 208 (551)
Q Consensus 165 ~~~~~----L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------------------- 208 (551)
+.+++ +.++++++|. +..++...+. ..+|+.|+++++....
T Consensus 174 ~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNP-IDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp HHHHHCTTCCCEEECTTCC-CCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhccccccceeeccCCC-cceeCccccc--CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 22333 3467777754 4444433221 1467777777653210
Q ss_pred --------------------------eeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCC
Q 008856 209 --------------------------YIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCP 262 (551)
Q Consensus 209 --------------------------~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 262 (551)
.++....+++|+.++++++ .++.+ | .+.. +++|++|++++|.
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~l--~-~l~~--------~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYL--E-DVPK--------HFKWQSLSIIRCQ 318 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC-CCCCC--C-CCCT--------TCCCSEEEEESCC
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc-cchhh--h-hccc--------cccCCEEEccccc
Confidence 0000122356666666653 33444 3 3333 5567777777754
Q ss_pred CCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc---cccccCCCCcce
Q 008856 263 SLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL---PSGLHKLHQLRE 339 (551)
Q Consensus 263 ~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~ 339 (551)
. .. +|...++ +|++|++++|...... .+..+++|+.|++++ +.+... +..+..+++|++
T Consensus 319 l-~~-lp~~~l~-------------~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 319 L-KQ-FPTLDLP-------------FLKSLTLTMNKGSISF--KKVALPSLSYLDLSR-NALSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp C-SS-CCCCCCS-------------SCCEEEEESCSSCEEC--CCCCCTTCCEEECCS-SCEEEEEECCHHHHCCSCCCE
T ss_pred C-cc-cccCCCC-------------ccceeeccCCcCccch--hhccCCCCCEEECcC-CccCCCcchhhhhccCCcccE
Confidence 3 44 3322222 4888888888554433 566888999999988 445544 566778899999
Q ss_pred EEecCCCCCccCCCCCCCCCCccEEEEccCccccccc-cccccCCcccceeccc-ccccccc--CCcCCCcceeEecCCc
Q 008856 340 ISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEE--DGLPTNLHSLVIRGNM 415 (551)
Q Consensus 340 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~--~~~~~~L~~L~l~~~~ 415 (551)
|++++| .+..++.....+++|+.|++++|......+ ..+.++++|+.|++++ .+..... ...+++|++|++++|.
T Consensus 381 L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 381 LDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred eECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 999985 466677666667799999999865444344 4688899999999998 5555333 2567899999999998
Q ss_pred hhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhh-hhhccCCCCcCE
Q 008856 416 EIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL-SSSIIDLRNLTE 494 (551)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~ 494 (551)
......+.. +..+++|++|++++|. +..++... +..+++|++|++++ +.+..+ |..+..+++|++
T Consensus 460 l~~~~~~~~---~~~l~~L~~L~Ls~n~----l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 460 FKDNTLSNV---FANTTNLTFLDLSKCQ----LEQISWGV------FDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp EGGGEECSC---CTTCTTCCEEECTTSC----CCEECTTT------TTTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCE
T ss_pred CCCcchHHh---hccCCCCCEEECCCCc----CCccChhh------hcccccCCEEECCC-CcCCCcCHHHccCCCcCCE
Confidence 544333333 7788999999999983 55554432 23578999999999 577665 678888999999
Q ss_pred EEEcCCCCccccCCC--CCccccceEeecCCc
Q 008856 495 LVLRGCPKLKYFPEK--GLPSSLLELWISGCP 524 (551)
Q Consensus 495 L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 524 (551)
|++++| +++.+|.. .++.+|++|++++++
T Consensus 526 L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 526 LDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred EECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 999995 58888875 223469999998875
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-33 Score=306.12 Aligned_cols=467 Identities=17% Similarity=0.072 Sum_probs=333.3
Q ss_pred hhhhccCCCCcceEEeCCCCCcccccc---ccccceeeeccccCcccceeccC-CcCCCCCCccEEEecCCCCchhhccc
Q 008856 4 IVISITSLPALCKMEIGGCKKVVWRSA---TDHLGSQNSVVCRDASNQVFLAG-PLKPRIPKLEELKINNIQNETCIWKS 79 (551)
Q Consensus 4 ~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~ 79 (551)
+..+|+.+++|+.++++++....++.. +.+|++|++.+|.... .+|. .....+++|++|+++++.-....
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--- 142 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG---PVTTLTSLGSCSGLKFLNVSSNTLDFPG--- 142 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEE---EGGGGGGGGGCTTCCEEECCSSEEECCS---
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCC---cCCChHHHhCCCCCCEEECcCCccCCcC---
Confidence 566788888999999888766554333 6778999998886442 2332 12456899999999995332222
Q ss_pred CcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCc
Q 008856 80 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLV 159 (551)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 159 (551)
+...+..+++|++|++++|. ++...+..+ ..+..+ ++|++|++++|......+ ...+++|++|++++|....
T Consensus 143 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~~~l----~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~ 214 (768)
T 3rgz_A 143 KVSGGLKLNSLEVLDLSANS-ISGANVVGW-VLSDGC----GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST 214 (768)
T ss_dssp SCCSCCCCTTCSEEECCSSC-CEEETHHHH-HHTTCC----TTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCS
T ss_pred CHHHhccCCCCCEEECCCCc-cCCcCChhh-hhhccC----CCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCC
Confidence 44444688999999999964 666544311 113444 899999999975433333 4789999999999975544
Q ss_pred ccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccc
Q 008856 160 SFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGI 239 (551)
Q Consensus 160 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 239 (551)
.++.++.+++|++|++++|.-...++..+ ..+++|++|++++|.....++.. .+++|++|+++++.-...+ |..+
T Consensus 215 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~i--p~~~ 289 (768)
T 3rgz_A 215 GIPFLGDCSALQHLDISGNKLSGDFSRAI--STCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEI--PDFL 289 (768)
T ss_dssp CCCBCTTCCSCCEEECCSSCCCSCHHHHT--TTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESC--CCCS
T ss_pred CCcccccCCCCCEEECcCCcCCCcccHHH--hcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCcc--CHHH
Confidence 56667889999999999977443444442 33489999999997644444433 6789999999986433344 6655
Q ss_pred cccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhh-hcCCCCCcEEEE
Q 008856 240 QCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAER-LDNNTSLETISI 318 (551)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l 318 (551)
.. .+++|++|+++++. ++. ..|..+.++. +|++|++++|.....++.. +..+++|++|++
T Consensus 290 ~~-------~~~~L~~L~Ls~n~-l~~-----~~p~~~~~l~------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 290 SG-------ACDTLTGLDLSGNH-FYG-----AVPPFFGSCS------LLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CT-------TCTTCSEEECCSSE-EEE-----CCCGGGGGCT------TCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred Hh-------hcCcCCEEECcCCc-CCC-----ccchHHhcCC------CccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 44 13679999999853 332 1333333333 5999999999766455544 889999999999
Q ss_pred ecCCCcccccccccCCC-CcceEEecCCCCCccCCCCCCC--CCCccEEEEccCccccccccccccCCcccceeccc-cc
Q 008856 319 YNCENLKILPSGLHKLH-QLREISIGSCGNLVSFPGGGLP--CAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-AL 394 (551)
Q Consensus 319 ~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l 394 (551)
++|.....+|..+..++ +|++|++++|.-...++..... +++|+.|++++|.....+|..+.++++|+.|++++ .+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 99543336788888777 9999999997544445543322 56899999999765557888899999999999999 55
Q ss_pred c-ccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccc-cccccccccccccccccccccc
Q 008856 395 L-SLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMV-SFPLEDKRLGTVLRLPTTLTSL 471 (551)
Q Consensus 395 ~-~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L 471 (551)
. .+|.. +.+++|++|++++|..... .+.. +..+++|++|++++|. +. .+|... ..+++|++|
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~---~~~l~~L~~L~L~~N~----l~~~~p~~l-------~~l~~L~~L 495 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQE---LMYVKTLETLILDFND----LTGEIPSGL-------SNCTNLNWI 495 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSC-CCGG---GGGCTTCCEEECCSSC----CCSCCCGGG-------GGCTTCCEE
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCc-CCHH---HcCCCCceEEEecCCc----ccCcCCHHH-------hcCCCCCEE
Confidence 5 33432 5678999999999985432 2222 6788999999999993 44 455543 367899999
Q ss_pred ccccCCChh-hhhhhccCCCCcCEEEEcCCCCccccCCC-CCccccceEeecCCc
Q 008856 472 RIEDFPNLE-RLSSSIIDLRNLTELVLRGCPKLKYFPEK-GLPSSLLELWISGCP 524 (551)
Q Consensus 472 ~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 524 (551)
+++++ .+. .+|.++..+++|++|++++|.....+|.. ..+++|++|++++|+
T Consensus 496 ~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 496 SLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 99994 555 67888999999999999997654466653 236789999999885
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.2e-32 Score=291.60 Aligned_cols=454 Identities=15% Similarity=0.143 Sum_probs=266.2
Q ss_pred CcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccC
Q 008856 13 ALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 88 (551)
Q Consensus 13 ~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 88 (551)
++++|++++|....+.. .+++|++|++.+|.... +++..+..+++|++|++++ +.+..+ .+..+..++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~-n~l~~~---~~~~~~~l~ 105 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTA-NPLIFM---AETALSGPK 105 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTT-CCCSEE---CTTTTSSCT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCC-Cccccc---Chhhhcccc
Confidence 46666666655444322 24455666665554321 2222234456666666665 344433 334455566
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-cccCCCCCCceEEEccCCCCcccCC--CC
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP-QSSFSLSSLREIEIFKCSSLVSFPE--VA 165 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~--~~ 165 (551)
+|++|+++++ .++.+++. .+..+ ++|++|++++|. +..++ ..+..+++|++|+++++ .++.+++ ++
T Consensus 106 ~L~~L~L~~n-~i~~l~~~----~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 174 (606)
T 3t6q_A 106 ALKHLFFIQT-GISSIDFI----PLHNQ----KTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMS 174 (606)
T ss_dssp TCCEEECTTS-CCSCGGGS----CCTTC----TTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHH
T ss_pred cccEeecccc-CcccCCcc----hhccC----CcccEEECCCCc-ccccCcccccCCcccCEEEcccC-cccccChhhhh
Confidence 6666666654 35444332 13333 556666665542 23221 12233555666666553 3333322 33
Q ss_pred CCCCCc--EEEccCCCCccccchhhhh-------------------------------------------------ccCC
Q 008856 166 LPSKLK--KIQIGECDALKSLPEAWMC-------------------------------------------------DTNS 194 (551)
Q Consensus 166 ~~~~L~--~L~l~~~~~l~~~~~~~~~-------------------------------------------------~~~~ 194 (551)
.+++|+ .|++++|......+..+.. ....
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 445555 4555544321111111000 0001
Q ss_pred CccEEEEecCCCcceeccc--cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCC
Q 008856 195 SLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNE 272 (551)
Q Consensus 195 ~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 272 (551)
+++.|+++++ .++.++.. ..+++|+.|+++++ .++.+ |.++.. +++|++|+++++ .++. .+.
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~l--p~~l~~--------l~~L~~L~l~~n-~l~~-~~~-- 318 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT-HLSEL--PSGLVG--------LSTLKKLVLSAN-KFEN-LCQ-- 318 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTS-CCSCC--CSSCCS--------CTTCCEEECTTC-CCSB-GGG--
T ss_pred ceeEEEeecC-ccCccCHHHhccccCCCEEeccCC-ccCCC--Chhhcc--------cccCCEEECccC-CcCc-Cch--
Confidence 4666666653 33444432 33577888888774 56655 666665 667888888774 3433 211
Q ss_pred chhhhhhccccCCCCCccEEEeccCcchhhh-HhhhcCCCCCcEEEEecCCCcccc---cccccCCCCcceEEecCCCCC
Q 008856 273 LPATLESLEVGNLPPSLKSLRVRYCSKLESI-AERLDNNTSLETISIYNCENLKIL---PSGLHKLHQLREISIGSCGNL 348 (551)
Q Consensus 273 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~l 348 (551)
..+..+ ++|++|++++|.....+ ...+..+++|+.|++++ +.+..+ +..+..+++|++|++++|...
T Consensus 319 --~~~~~l------~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 319 --ISASNF------PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp --GCGGGC------TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred --hhhhcc------CcCCEEECCCCCcccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCC
Confidence 111111 15888888888655333 33477888888888888 445544 456778889999999886443
Q ss_pred ccCCCCCCCCCCccEEEEccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhh
Q 008856 349 VSFPGGGLPCAKLTALEIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEW 424 (551)
Q Consensus 349 ~~l~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~ 424 (551)
...+.....+++|+.|++++|......+ ..+.++++|+.|++++ .+...+.. ..+++|++|++++|+......+.
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~- 468 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK- 468 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS-
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc-
Confidence 3334455556789999998865333333 3478889999999988 66554432 45789999999999854322111
Q ss_pred ccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhh-hhhccCCCCcCEEEEcCCCCc
Q 008856 425 GRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL-SSSIIDLRNLTELVLRGCPKL 503 (551)
Q Consensus 425 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l 503 (551)
...+..+++|++|++++|. +..++... +..+++|++|++++ +.+..+ |..+.++++| +|++++| ++
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~----l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~l 535 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCD----LSSIDQHA------FTSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-HI 535 (606)
T ss_dssp SCGGGGCTTCCEEECTTSC----CCEECTTT------TTTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-CC
T ss_pred chhhccCCCccEEECCCCc----cCccChhh------hccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-cc
Confidence 1126788999999999983 55554322 23578999999999 566654 5788889999 9999995 56
Q ss_pred cccCCCCC--ccccceEeecCCc
Q 008856 504 KYFPEKGL--PSSLLELWISGCP 524 (551)
Q Consensus 504 ~~l~~~~~--~~~L~~L~i~~c~ 524 (551)
+.++...+ +++|+.|++++||
T Consensus 536 ~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 536 SIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCCGGGHHHHHTSSEEECTTCC
T ss_pred cccCHhhcccCCCCCEEeCCCCC
Confidence 66655432 5789999999986
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-31 Score=288.61 Aligned_cols=429 Identities=15% Similarity=0.117 Sum_probs=317.9
Q ss_pred hccCCCCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcc
Q 008856 7 SITSLPALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNE 82 (551)
Q Consensus 7 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 82 (551)
+|+.+++|++|++++|....+.. .+.+|++|++.++.... .++..+..+++|++|++++ +.++.+ +..
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~-n~l~~~---~~~ 122 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS----FSPGSFSGLTSLENLVAVE-TKLASL---ESF 122 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC----CCTTSSTTCTTCCEEECTT-SCCCCS---SSS
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc----cChhhcCCcccCCEEEccC-Cccccc---ccc
Confidence 68899999999999997766533 36779999999887543 4334456799999999999 466666 555
Q ss_pred hhcccCCccEEeecCCccccc--cchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCc----eEEEccCC
Q 008856 83 LLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLR----EIEIFKCS 156 (551)
Q Consensus 83 ~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~----~L~l~~c~ 156 (551)
.++.+++|++|++++|. +.. +|. ++..+ ++|++|++++|......+..+..+.+|+ +|+++++
T Consensus 123 ~~~~l~~L~~L~L~~n~-l~~~~lp~-----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n- 191 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNF-IHSCKLPA-----YFSNL----TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN- 191 (606)
T ss_dssp CCTTCTTCCEEECCSSC-CCCCCCCG-----GGGTC----TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC-
T ss_pred ccCCCCCCCEEeCCCCc-ccceechH-----hHhhc----CCCCEEEccCCcceecChhhhhhhhccccccceeeccCC-
Confidence 58899999999999964 654 343 36666 9999999998643333344455555444 7888874
Q ss_pred CCcccCC-CCCCCCCcEEEccCCCCc------------------------------------------------------
Q 008856 157 SLVSFPE-VALPSKLKKIQIGECDAL------------------------------------------------------ 181 (551)
Q Consensus 157 ~l~~~~~-~~~~~~L~~L~l~~~~~l------------------------------------------------------ 181 (551)
.++.+++ .....+|++|++++|...
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 5566554 333447888887776321
Q ss_pred ---cccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEE
Q 008856 182 ---KSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGI 258 (551)
Q Consensus 182 ---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l 258 (551)
...... ....++|+.|+++++. ++.++....+++|+.|++++|.. ..+ |. + . +++|++|++
T Consensus 272 ~~~~~~~~~--~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~l--p~-~-~--------l~~L~~L~l 335 (606)
T 3vq2_A 272 NDFSDDIVK--FHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQF--PT-L-D--------LPFLKSLTL 335 (606)
T ss_dssp TTCCGGGGS--CGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSC--CC-C-C--------CSSCCEEEE
T ss_pred ccccccccc--cccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccc--cc-C-C--------CCccceeec
Confidence 000011 1223789999999854 56666556678999999999754 666 53 3 4 778999999
Q ss_pred ecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhh--hHhhhcCCCCCcEEEEecCCCcccccccccCCCC
Q 008856 259 RYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLES--IAERLDNNTSLETISIYNCENLKILPSGLHKLHQ 336 (551)
Q Consensus 259 ~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 336 (551)
+++..+.. ++...++. |++|++++|..... .+..+..+++|++|++++ +.+..+|..+..+++
T Consensus 336 ~~n~~~~~-~~~~~l~~-------------L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 336 TMNKGSIS-FKKVALPS-------------LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF-NGAIIMSANFMGLEE 400 (606)
T ss_dssp ESCSSCEE-CCCCCCTT-------------CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS-CSEEEECCCCTTCTT
T ss_pred cCCcCccc-hhhccCCC-------------CCEEECcCCccCCCcchhhhhccCCcccEeECCC-CccccchhhccCCCC
Confidence 99876666 55555665 99999999975433 366788999999999999 557778888889999
Q ss_pred cceEEecCCCCCccCC-CCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccc--cccC-CcCCCcceeEe
Q 008856 337 LREISIGSCGNLVSFP-GGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLS--LEED-GLPTNLHSLVI 411 (551)
Q Consensus 337 L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~--l~~~-~~~~~L~~L~l 411 (551)
|++|++++|......+ .....+++|+.|++++|......|..+.++++|+.|++++ .+.. ++.. ..+++|++|++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 9999999964443334 3455677999999999876666778899999999999999 6654 4443 56899999999
Q ss_pred cCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccc-ccccccccccccccccccccccccCCChhhhhhhccCCC
Q 008856 412 RGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSF-PLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLR 490 (551)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 490 (551)
++|.... ..+.+ +..+++|++|++++|. +..+ |... ..+++|++|++++ ++++.+|..+..++
T Consensus 481 s~n~l~~-~~~~~---~~~l~~L~~L~Ls~N~----l~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~p~~~~~l~ 544 (606)
T 3vq2_A 481 SKCQLEQ-ISWGV---FDTLHRLQLLNMSHNN----LLFLDSSHY-------NQLYSLSTLDCSF-NRIETSKGILQHFP 544 (606)
T ss_dssp TTSCCCE-ECTTT---TTTCTTCCEEECCSSC----CSCEEGGGT-------TTCTTCCEEECTT-SCCCCEESCGGGSC
T ss_pred CCCcCCc-cChhh---hcccccCCEEECCCCc----CCCcCHHHc-------cCCCcCCEEECCC-CcCcccCHhHhhhc
Confidence 9997443 33333 7789999999999993 5555 3333 4578999999999 68999998788887
Q ss_pred -CcCEEEEcCCC
Q 008856 491 -NLTELVLRGCP 501 (551)
Q Consensus 491 -~L~~L~l~~c~ 501 (551)
+|++|++++|+
T Consensus 545 ~~L~~l~l~~N~ 556 (606)
T 3vq2_A 545 KSLAFFNLTNNS 556 (606)
T ss_dssp TTCCEEECCSCC
T ss_pred ccCcEEEccCCC
Confidence 59999999966
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.4e-31 Score=287.51 Aligned_cols=223 Identities=17% Similarity=0.105 Sum_probs=146.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~ 365 (551)
+|+.|++++|......+..+..+++|+.|+++++.....++ ..+..+++|++|++++|. +..+ +.....+++|+.|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccch
Confidence 45566666655444445566667777777777733222343 455667777777777754 3333 23344456788888
Q ss_pred EccCcc--ccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhh-----ccccccCCCcc
Q 008856 366 IYDCKR--LKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEW-----GRGFHRFSSLR 435 (551)
Q Consensus 366 l~~c~~--l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~l~~L~ 435 (551)
++++.. +..+|..+.++++|+.|++++ .+..++.. ..+++|++|++++|.... ..... ...+..+++|+
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR-LWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG-GGSTTSTTSCCCTTTTCTTCC
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc-cchhhccCCcchhhcCCCCCC
Confidence 877532 245677788888888888888 77776654 456888888888887432 21110 00156778888
Q ss_pred EEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhh-ccCCCCcCEEEEcCCCCccccCCCC---C
Q 008856 436 HLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSS-IIDLRNLTELVLRGCPKLKYFPEKG---L 511 (551)
Q Consensus 436 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~---~ 511 (551)
+|++++|. +..+|... +..+++|+.|++++ ++++.+|.. +..+++|++|++++ ++++.++... .
T Consensus 540 ~L~L~~N~----l~~i~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~ 607 (680)
T 1ziw_A 540 ILNLESNG----FDEIPVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPA 607 (680)
T ss_dssp EEECCSSC----CCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHH
T ss_pred EEECCCCC----CCCCCHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhccc
Confidence 88888883 66777643 34567888889888 788888743 56788899999988 4677766532 3
Q ss_pred ccccceEeecCCc
Q 008856 512 PSSLLELWISGCP 524 (551)
Q Consensus 512 ~~~L~~L~i~~c~ 524 (551)
+++|+.+++++||
T Consensus 608 ~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 608 FRNLTELDMRFNP 620 (680)
T ss_dssp HTTCSEEECTTCC
T ss_pred ccccCEEEccCCC
Confidence 4788889888875
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8e-31 Score=281.62 Aligned_cols=192 Identities=13% Similarity=0.057 Sum_probs=137.7
Q ss_pred ceEEeCCCCCccccccc-cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSAT-DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
+.++.++.....++..+ ..++.|++.++.... +++..+..+++|++|++++ +.++.+ .+..|..+++|++|
T Consensus 15 ~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~-n~i~~~---~~~~~~~l~~L~~L 86 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTR-CQIYWI---HEDTFQSQHRLDTL 86 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTT-CCCCEE---CTTTTTTCTTCCEE
T ss_pred ceEECCCCCcccCcCCCCCcCcEEEccCCccCc----CChhHhccCccceEEECCC-Ccccee---ChhhccCccccCee
Confidence 45666665555577664 459999999987653 4445567799999999999 466666 66778999999999
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-ccccCCCCCCceEEEccCCCCccc--CCCCCCCCC
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL-PQSSFSLSSLREIEIFKCSSLVSF--PEVALPSKL 170 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~L 170 (551)
++++| .+..+++. ++..+ ++|++|++++|. +..+ +..+..+++|++|+++++ .++.+ +....+++|
T Consensus 87 ~Ls~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 155 (606)
T 3t6q_A 87 VLTAN-PLIFMAET----ALSGP----KALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKL 155 (606)
T ss_dssp ECTTC-CCSEECTT----TTSSC----TTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTC
T ss_pred eCCCC-cccccChh----hhccc----ccccEeeccccC-cccCCcchhccCCcccEEECCCC-cccccCcccccCCccc
Confidence 99996 47776553 36666 999999999964 4554 567899999999999995 56654 555558999
Q ss_pred cEEEccCCCCccccchhhhhccCCCcc--EEEEecCCCcceeccc-cCCCCccEEEEecCC
Q 008856 171 KKIQIGECDALKSLPEAWMCDTNSSLE--ILSIHGCRSLTYIAAV-QLPSSLKMLTIWYCD 228 (551)
Q Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 228 (551)
++|++++|. +..++...+ ..+++|+ .|++++|. ++.++.. ....+|+.++++++.
T Consensus 156 ~~L~L~~n~-l~~~~~~~~-~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 156 KVLDFQNNA-IHYLSKEDM-SSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp CEEECCSSC-CCEECHHHH-HTTTTCCSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCS
T ss_pred CEEEcccCc-ccccChhhh-hhhcccceeEEecCCCc-cCccChhHhhhccccccccCCch
Confidence 999999975 555433222 2347788 78888864 4444433 223567777776654
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=1.6e-30 Score=283.11 Aligned_cols=469 Identities=16% Similarity=0.120 Sum_probs=228.8
Q ss_pred hccCCCCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcc
Q 008856 7 SITSLPALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNE 82 (551)
Q Consensus 7 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 82 (551)
+|+.+++|++|++++|....+.. .+++|+.|++.++... .++...+..+++|++|++++ +.++.+ +..
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~-n~l~~~---~~~ 115 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS----QLSDKTFAFCTNLTELHLMS-NSIQKI---KNN 115 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCS-SCCCCC---CSC
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC----ccChhhhccCCCCCEEECCC-CccCcc---Chh
Confidence 46667777777777765544322 2556666666665433 23433344456666666665 244444 444
Q ss_pred hhcccCCccEEeecCCccccccchhhhhhhhhhh----------------------hccCCCccEEecccCccccccccc
Q 008856 83 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQL----------------------CQLSCRLEYLILSYCEGLVKLPQS 140 (551)
Q Consensus 83 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l----------------------~~~~~~L~~L~L~~~~~l~~~~~~ 140 (551)
.+..+++|++|++++|. +..+++.. +..+ ....++|++|++++|..-...+..
T Consensus 116 ~~~~l~~L~~L~Ls~n~-l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNG-LSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCCCS----SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred HccccCCCCEEECCCCc-ccccCchh----hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 45555556666655542 33332211 2222 001144555555443211111111
Q ss_pred cCCC---------------------------CCCceEEEccCCCCcccCC--CCCC--CCCcEEEccCCCCccccchhhh
Q 008856 141 SFSL---------------------------SSLREIEIFKCSSLVSFPE--VALP--SKLKKIQIGECDALKSLPEAWM 189 (551)
Q Consensus 141 ~~~l---------------------------~~L~~L~l~~c~~l~~~~~--~~~~--~~L~~L~l~~~~~l~~~~~~~~ 189 (551)
+..+ ++|++|+++++ .++...+ +..+ ++|++|++++|. +..++...+
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~ 268 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSF 268 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS-CCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTT
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC-cccccChhHhhccCcCCCCEEECCCCC-cCccCcccc
Confidence 2222 23344444432 2222221 2222 347777777754 333332211
Q ss_pred hccCCCccEEEEecCCCcceeccc--cCCCCccEEEEecCCCcccc---cccc----cccccCCCcccccCCccEEEEec
Q 008856 190 CDTNSSLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDNIRTL---TVEE----GIQCSSSSRRYTSYLLEHLGIRY 260 (551)
Q Consensus 190 ~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l---~~~~----~~~~~~~~~~~~~~~L~~L~l~~ 260 (551)
..+++|+.|++++|. ++.+... ..+++|+.|+++++..-..+ .+|. .+.. +++|++|++++
T Consensus 269 -~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~--------l~~L~~L~l~~ 338 (680)
T 1ziw_A 269 -AWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW--------LKCLEHLNMED 338 (680)
T ss_dssp -TTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT--------CTTCCEEECCS
T ss_pred -cCcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc--------CCCCCEEECCC
Confidence 234778888888753 3333322 34567777777653211100 0011 2222 45677777766
Q ss_pred CCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc-hhhhH-hhhc--CCCCCcEEEEecCCCcccc-cccccCCC
Q 008856 261 CPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK-LESIA-ERLD--NNTSLETISIYNCENLKIL-PSGLHKLH 335 (551)
Q Consensus 261 c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~-~~~~~-~~~~--~l~~L~~L~l~~~~~l~~~-~~~~~~~~ 335 (551)
+ .+.. .+...+. .+ ++|++|++++|.. ...++ ..+. ..++|+.|+++++ .+..+ +..+..++
T Consensus 339 n-~l~~-~~~~~~~----~l------~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 339 N-DIPG-IKSNMFT----GL------INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLG 405 (680)
T ss_dssp C-CBCC-CCTTTTT----TC------TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTTTTCT
T ss_pred C-ccCC-CChhHhc----cc------cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhhhCCC
Confidence 3 3333 2211111 11 1367777766642 11111 1111 1246677777663 34443 55566667
Q ss_pred CcceEEecCCCCCccCCC-CCCCCCCccEEEEccCccccccccccccCCcccceeccc-ccc---ccccC-CcCCCccee
Q 008856 336 QLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALL---SLEED-GLPTNLHSL 409 (551)
Q Consensus 336 ~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~---~l~~~-~~~~~L~~L 409 (551)
+|++|++++|.....++. ....+++|+.|++++|......+..+..+++|+.|++++ .+. .+|.. ..+++|++|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 777777776533333432 233345677777776543222344566667777777766 332 22322 345667777
Q ss_pred EecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccc--ccccccccccccccccccCCChhhhhh-hc
Q 008856 410 VIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKR--LGTVLRLPTTLTSLRIEDFPNLERLSS-SI 486 (551)
Q Consensus 410 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~ 486 (551)
++++|... ...+.. +..+++|++|++++|. +..++..... ....+..+++|++|++++ +.++.+|. .+
T Consensus 486 ~Ls~N~l~-~i~~~~---~~~l~~L~~L~Ls~N~----l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~ 556 (680)
T 1ziw_A 486 DLSNNNIA-NINDDM---LEGLEKLEILDLQHNN----LARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVF 556 (680)
T ss_dssp ECCSSCCC-CCCTTT---TTTCTTCCEEECCSSC----CGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred ECCCCCCC-cCChhh---hccccccCEEeCCCCC----ccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHc
Confidence 77766622 222222 5566677777777662 4443221100 001123456677777776 56666663 35
Q ss_pred cCCCCcCEEEEcCCCCccccCCCCC--ccccceEeecCC
Q 008856 487 IDLRNLTELVLRGCPKLKYFPEKGL--PSSLLELWISGC 523 (551)
Q Consensus 487 ~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c 523 (551)
..+++|++|++++ ++++.++...+ +++|+.|++++|
T Consensus 557 ~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 557 KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC
Confidence 6667777777766 45666665432 466777777766
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=276.27 Aligned_cols=445 Identities=15% Similarity=0.126 Sum_probs=295.3
Q ss_pred CCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
+++++|++++|....+.. .+++|+.|++.+|... .++...+..+++|++|++++ +.++.+ +...+..+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~-n~l~~~---~~~~~~~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTG-NPIQSL---ALGAFSGL 99 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTT-CCCCEE---CTTTTTTC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC----ccCcccccCchhCCEEeCcC-CcCCcc---CHhhhcCc
Confidence 468888888887655432 3677888888887533 34445556688888888888 456666 66667888
Q ss_pred CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-ccccccCCCCCCceEEEccCCCCcccCC--C
Q 008856 88 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-KLPQSSFSLSSLREIEIFKCSSLVSFPE--V 164 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~ 164 (551)
++|++|+++++ .++.+++. .+..+ ++|++|++++|.... .+|..+..+++|++|+++++ .++.+++ +
T Consensus 100 ~~L~~L~L~~n-~l~~l~~~----~~~~l----~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 169 (570)
T 2z63_A 100 SSLQKLVAVET-NLASLENF----PIGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 169 (570)
T ss_dssp TTCCEEECTTS-CCCCSTTC----SCTTC----TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGG
T ss_pred ccccccccccc-ccccCCCc----ccccc----ccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHc
Confidence 88888888885 47776653 25555 888888888864322 36777888888888888885 4555543 3
Q ss_pred CCCCCC----cEEEccCCCCccccchhhhhccCCCccEEEEecCCCc------------------------------cee
Q 008856 165 ALPSKL----KKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL------------------------------TYI 210 (551)
Q Consensus 165 ~~~~~L----~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------------~~~ 210 (551)
+.+++| +.+++++|. +..++...+ ...+|+.|+++++..- ..+
T Consensus 170 ~~l~~L~~~~~~L~l~~n~-l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNP-MNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp HHHHTCTTCCCEEECTTCC-CCEECTTTT--TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred cchhccchhhhhcccCCCC-ceecCHHHh--ccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 445556 778888765 444333221 1246888888765210 011
Q ss_pred cccc--CC--CCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCC
Q 008856 211 AAVQ--LP--SSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLP 286 (551)
Q Consensus 211 ~~~~--~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 286 (551)
+... .+ ..++.+.+.++..+... ++..+.. +++|++|+++++ .++. + |.++.. .
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~-~~~~~~~--------l~~L~~L~l~~~-~l~~-l-----~~~~~~-----~- 304 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDD-IIDLFNC--------LTNVSSFSLVSV-TIER-V-----KDFSYN-----F- 304 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESC-STTTTGG--------GTTCSEEEEESC-EECS-C-----CBCCSC-----C-
T ss_pred chhhhccccccchhhhhhhcchhhhhh-chhhhcC--------cCcccEEEecCc-cchh-h-----hhhhcc-----C-
Confidence 1000 00 12344444443222211 1334444 668999999985 3433 2 221111 1
Q ss_pred CCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccC---CCCCCCCCCccE
Q 008856 287 PSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSF---PGGGLPCAKLTA 363 (551)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~~~~L~~ 363 (551)
+|++|++++|... .++. ..+++|+.|+++++......+. ..+++|++|++++| .+... +.....+++|+.
T Consensus 305 -~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 305 -GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp -CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCE
T ss_pred -CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCC-ccCccccccccccccCccCE
Confidence 4999999998654 3333 5788999999999553333332 67899999999985 34333 223334568999
Q ss_pred EEEccCccccccccccccCCcccceeccc-ccccccc---CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEE
Q 008856 364 LEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEE---DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTI 439 (551)
Q Consensus 364 L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 439 (551)
|++++|. ++.++..+.++++|+.|++++ .+...+. ...+++|++|++++|.... ..+.. +..+++|++|++
T Consensus 378 L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~---~~~l~~L~~L~l 452 (570)
T 2z63_A 378 LDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGI---FNGLSSLEVLKM 452 (570)
T ss_dssp EECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-CCTTT---TTTCTTCCEEEC
T ss_pred EECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-cchhh---hhcCCcCcEEEC
Confidence 9999854 666666688999999999998 6655433 3567899999999997443 22332 678899999999
Q ss_pred eccCCCCccc--ccccccccccccccccccccccccccCCChhhh-hhhccCCCCcCEEEEcCCCCccccCCCC--Cccc
Q 008856 440 DGCDDDTMMV--SFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL-SSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSS 514 (551)
Q Consensus 440 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~ 514 (551)
++|. +. .+|... ..+++|++|++++ +.++.+ |..+..+++|++|++++| +++.++... .+++
T Consensus 453 ~~n~----l~~~~~p~~~-------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 453 AGNS----FQENFLPDIF-------TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTS 519 (570)
T ss_dssp TTCE----EGGGEECSCC-------TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred cCCc----Cccccchhhh-------hcccCCCEEECCC-CccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccC
Confidence 9983 43 455433 4678999999999 577776 677888999999999995 677776543 3679
Q ss_pred cceEeecCCc
Q 008856 515 LLELWISGCP 524 (551)
Q Consensus 515 L~~L~i~~c~ 524 (551)
|++|++++|+
T Consensus 520 L~~L~l~~N~ 529 (570)
T 2z63_A 520 LQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSSC
T ss_pred CcEEEecCCc
Confidence 9999999865
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.8e-29 Score=277.84 Aligned_cols=220 Identities=19% Similarity=0.156 Sum_probs=131.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|+.|++++|......+..+..+++|++|++++ +.+..+ +..+..+++|++|++++| .+..++. ....+++|+.|+
T Consensus 291 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCEEEEESCCCCEECTTTTTTCSSCCEEEEES-CCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEE
T ss_pred CCCEEECCCCcCCCCChHHhcCCCCCCEEECCC-CCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEE
Confidence 467777776655444455666667777777776 344444 555666677777777764 4444443 233345666666
Q ss_pred EccCccccccccccccCCcccceeccc-cccccccC-----------------------CcCCCcceeEecCCchhhhhh
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-----------------------GLPTNLHSLVIRGNMEIWKSM 421 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-----------------------~~~~~L~~L~l~~~~~~~~~~ 421 (551)
+++| .++.++ .+++|+.|++++ .+..++.. ..+++|++|++++|.... ..
T Consensus 369 Ls~N-~l~~i~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~ 442 (844)
T 3j0a_A 369 LRDN-ALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS-CS 442 (844)
T ss_dssp EETC-CSCCCS----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC-CC
T ss_pred CCCC-CCCccc----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc-cc
Confidence 6663 333332 244444555444 33333221 245677777777776322 11
Q ss_pred hhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCC
Q 008856 422 IEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGC 500 (551)
Q Consensus 422 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c 500 (551)
.... +..+++|+.|++++|. +...+... .....+..+++|++|++++ +.++.++ ..+..+++|++|++++
T Consensus 443 ~~~~--~~~~~~L~~L~Ls~N~----l~~~~~~~-~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~- 513 (844)
T 3j0a_A 443 GDQT--PSENPSLEQLFLGENM----LQLAWETE-LCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNS- 513 (844)
T ss_dssp SSSS--SCSCTTCCBCEEESCC----CSSSCCSC-CCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEES-
T ss_pred cccc--cccCCccccccCCCCc----cccccccc-cchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCC-
Confidence 1111 3456777777777773 33322210 1112344668999999999 6888876 4578899999999999
Q ss_pred CCccccCCCCCccccceEeecCCc
Q 008856 501 PKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 501 ~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
++++.++...+.++|+.|+++++.
T Consensus 514 N~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 514 NRLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp CCCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CCCCccChhhhhccccEEECCCCc
Confidence 578888776666778887777653
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.2e-29 Score=269.19 Aligned_cols=450 Identities=17% Similarity=0.195 Sum_probs=273.6
Q ss_pred CCcceEEeCCCCCcccc----ccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWR----SATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
++|++|++++|....+. ..+++|++|++.++... .++...+..+++|++|++++ +.++.+ +...+..+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~-n~l~~~---~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSD-NHLSSL---SSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTT-SCCCSC---CHHHHTTC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCC-CccCcc---CHHHhccC
Confidence 57788888877654432 22566777777776543 23433345677788888877 455655 55556777
Q ss_pred CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-cccCCCCCCceEEEccCCCCcc-cCC-C
Q 008856 88 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP-QSSFSLSSLREIEIFKCSSLVS-FPE-V 164 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~-~~~-~ 164 (551)
++|++|++++|. ++.++.. ..+..+ ++|++|++++|..+..++ ..+..+++|++|+++++. ++. .+. +
T Consensus 98 ~~L~~L~Ls~n~-l~~~~~~---~~~~~l----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l 168 (549)
T 2z81_A 98 SSLKYLNLMGNP-YQTLGVT---SLFPNL----TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSL 168 (549)
T ss_dssp TTCCEEECTTCC-CSSSCSS---CSCTTC----TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTT
T ss_pred CCCcEEECCCCc-ccccchh---hhhhcc----CCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhh
Confidence 778888877753 5543211 124555 777788877765455554 457777777888877753 433 332 5
Q ss_pred CCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCccee-----ccccCCCCccEEEEecCCCccccc---cc
Q 008856 165 ALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI-----AAVQLPSSLKMLTIWYCDNIRTLT---VE 236 (551)
Q Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~l~---~~ 236 (551)
..+++|++|+++++. ...++..+ ....++|++|+++++. ++.+ +.....++|+.|+++++ .+.... ++
T Consensus 169 ~~l~~L~~L~l~~n~-~~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~ 244 (549)
T 2z81_A 169 KSIRDIHHLTLHLSE-SAFLLEIF-ADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELL 244 (549)
T ss_dssp TTCSEEEEEEEECSB-STTHHHHH-HHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHH
T ss_pred hccccCceEecccCc-ccccchhh-HhhcccccEEEccCCc-cccccccccchhhhhhcccceecccc-ccchhHHHHHH
Confidence 557777777777654 33333332 1234778888888753 3322 11234567888887774 222110 01
Q ss_pred ccccccCCCcccccCCccEEEEecCCCC--cccccCCCchhhhhhccccCCCCCccEEEeccCcchhh-----hHhhhcC
Q 008856 237 EGIQCSSSSRRYTSYLLEHLGIRYCPSL--TCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLES-----IAERLDN 309 (551)
Q Consensus 237 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~ 309 (551)
..+.. +++|+.+++++|..- .. ++..... .+. ...+|+.|++.++..... +...+..
T Consensus 245 ~~~~~--------~~~L~~l~l~~~~~~~~~~-~~~~~~~-~~~------~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 245 KLLRY--------ILELSEVEFDDCTLNGLGD-FNPSESD-VVS------ELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp GGGGG--------CTTCCEEEEESCEEECCSC-CCCCTTT-CCC------CCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred HHhhh--------hcccccccccccccccccc-ccccchh-hhh------hhcccccccccccccchhhhcccchhhhhh
Confidence 11222 456888888886421 11 1100000 000 012477777776643221 1112234
Q ss_pred CCCCcEEEEecCCCcccccccc-cCCCCcceEEecCCCCCccCC---CCCCCCCCccEEEEccCccccccc---cccccC
Q 008856 310 NTSLETISIYNCENLKILPSGL-HKLHQLREISIGSCGNLVSFP---GGGLPCAKLTALEIYDCKRLKALP---KGLHNL 382 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~l 382 (551)
.++|+.|++++ +.+..+|..+ ..+++|++|++++|.....++ .....+++|+.|++++| .++.++ ..+..+
T Consensus 309 ~~~L~~L~l~~-n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 309 LEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTL 386 (549)
T ss_dssp STTCCEEEEES-SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGC
T ss_pred cccceEEEecc-CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcC
Confidence 56788888888 5577777665 368888888888864433332 22334568888888885 455554 346778
Q ss_pred Ccccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccc
Q 008856 383 STLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGT 460 (551)
Q Consensus 383 ~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 460 (551)
++|+.|++++ .+..+|.. ..+++|++|++++|... .... .-.++|++|++++|. +..++.
T Consensus 387 ~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~------~~~~~L~~L~Ls~N~----l~~~~~------- 448 (549)
T 2z81_A 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKT------CIPQTLEVLDVSNNN----LDSFSL------- 448 (549)
T ss_dssp TTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCT------TSCTTCSEEECCSSC----CSCCCC-------
T ss_pred CCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccc------hhcCCceEEECCCCC----hhhhcc-------
Confidence 8888888888 77777764 45678888888888732 1111 112588888888883 555543
Q ss_pred cccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC--CccccceEeecCCc
Q 008856 461 VLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSSLLELWISGCP 524 (551)
Q Consensus 461 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 524 (551)
.+++|++|++++ ++++.+|. ...+++|++|++++| +++.++... .+++|+.|++++|+
T Consensus 449 ---~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 449 ---FLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp ---CCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ---cCChhcEEECCC-CccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 457888888888 67888875 356788888888884 576666542 35788888887765
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=281.68 Aligned_cols=455 Identities=17% Similarity=0.115 Sum_probs=248.3
Q ss_pred CCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
++|++|++++|....+.. .+.+|+.|++.+|.... .++...+..+++|++|++++ +.+..+ .+..+..+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~---~i~~~~f~~L~~L~~L~Ls~-N~l~~~---~p~~~~~l 96 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL---TIDKEAFRNLPNLRILDLGS-SKIYFL---HPDAFQGL 96 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC---EECTTTTSSCTTCCEEECTT-CCCCEE---CTTSSCSC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc---ccCHHHhcCCCCCCEEECCC-CcCccc---CHhHccCC
Confidence 567777777776554322 25667777777764322 34444456677777777777 455554 55556777
Q ss_pred CCccEEeecCCccccc-cchhhhhhhhhhhhccCCCccEEecccCcccccc-ccccCCCCCCceEEEccCCCCcccCC--
Q 008856 88 CSLKRLTITSCPKLQS-LVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL-PQSSFSLSSLREIEIFKCSSLVSFPE-- 163 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~-l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-- 163 (551)
++|++|++++|. +.. ++.. .++..+ ++|++|++++|...... +..+.++++|++|+++++ .++.+.+
T Consensus 97 ~~L~~L~Ls~n~-l~~~~~~~---~~~~~L----~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~ 167 (844)
T 3j0a_A 97 FHLFELRLYFCG-LSDAVLKD---GYFRNL----KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHE 167 (844)
T ss_dssp SSCCCEECTTCC-CSSCCSTT---CCCSSC----SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGG
T ss_pred cccCEeeCcCCC-CCcccccC---cccccc----CCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHH
Confidence 777777777753 543 2322 224555 77777777775432222 245677777777777764 3333221
Q ss_pred CCCC--CCCcEEEccCCCCccccchhhhh----ccCCCccEEEEecCCCcce----------------------------
Q 008856 164 VALP--SKLKKIQIGECDALKSLPEAWMC----DTNSSLEILSIHGCRSLTY---------------------------- 209 (551)
Q Consensus 164 ~~~~--~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~~~~~~~---------------------------- 209 (551)
+..+ ++|+.|++++|......+..+.. .....|+.|++++|..-..
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 1112 44555555444322211111000 0001244444444310000
Q ss_pred -------eccc----cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhh
Q 008856 210 -------IAAV----QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLE 278 (551)
Q Consensus 210 -------~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 278 (551)
.... ...++++.|+++++ .+..+ .+..+.. +++|+.|++++ +.++. .+...+ .
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~-~~~~~~~--------l~~L~~L~L~~-n~i~~-~~~~~~----~ 311 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSL-NSRVFET--------LKDLKVLNLAY-NKINK-IADEAF----Y 311 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEE-CSCCSSS--------CCCCCEEEEES-CCCCE-ECTTTT----T
T ss_pred cccccCCCChhhhhccccCCccEEECCCC-ccccc-Chhhhhc--------CCCCCEEECCC-CcCCC-CChHHh----c
Confidence 0000 00245555555553 22222 0222333 44566666665 33333 111111 1
Q ss_pred hccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCC
Q 008856 279 SLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLP 357 (551)
Q Consensus 279 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 357 (551)
.+ ++|++|++++|......+..+..+++|+.|++++ +.+..+ +..+..+++|++|++++| .++.++.
T Consensus 312 ~l------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---- 379 (844)
T 3j0a_A 312 GL------DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF---- 379 (844)
T ss_dssp TC------SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS----
T ss_pred CC------CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCCC-CCCcccC----
Confidence 11 1366666666654333344555666666666666 344444 233455566666666653 3333322
Q ss_pred CCCccEEEEccC-------------------cccccccc--ccccCCcccceeccc-cccccccC---CcCCCcceeEec
Q 008856 358 CAKLTALEIYDC-------------------KRLKALPK--GLHNLSTLQDLTIGG-ALLSLEED---GLPTNLHSLVIR 412 (551)
Q Consensus 358 ~~~L~~L~l~~c-------------------~~l~~~~~--~~~~l~~L~~L~l~~-~l~~l~~~---~~~~~L~~L~l~ 412 (551)
+++|+.|+++++ +.++.++. .+.++++|+.|++++ .+..++.. ..+++|++|+++
T Consensus 380 ~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 224444444442 22333221 244788999999998 66654432 346899999999
Q ss_pred CCchhhhhh-hhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCC
Q 008856 413 GNMEIWKSM-IEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRN 491 (551)
Q Consensus 413 ~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 491 (551)
+|....... ......+..+++|+.|++++|. +..++... +..+++|++|++++ |+++.+|..... ++
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~ 527 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNY----LNSLPPGV------FSHLTALRGLSLNS-NRLTVLSHNDLP-AN 527 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH----HTTCCTTS------SSSCCSCSEEEEES-CCCSSCCCCCCC-SC
T ss_pred CCccccccccccchhhhcCcccccEEECCCCc----ccccChhH------ccchhhhheeECCC-CCCCccChhhhh-cc
Confidence 998431110 0000126788999999999994 77777643 34678999999999 789888744333 89
Q ss_pred cCEEEEcCCCCccccCCCCCccccceEeecCCc
Q 008856 492 LTELVLRGCPKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 492 L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
|+.|++++ ++++.++... ..+|+.++++++|
T Consensus 528 L~~L~Ls~-N~l~~~~~~~-~~~L~~l~l~~Np 558 (844)
T 3j0a_A 528 LEILDISR-NQLLAPNPDV-FVSLSVLDITHNK 558 (844)
T ss_dssp CCEEEEEE-ECCCCCCSCC-CSSCCEEEEEEEC
T ss_pred ccEEECCC-CcCCCCChhH-hCCcCEEEecCCC
Confidence 99999999 5677665544 4589999998754
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=7.4e-30 Score=268.92 Aligned_cols=446 Identities=14% Similarity=0.106 Sum_probs=298.1
Q ss_pred ceEEeCCCCCcccccc-ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSA-TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
++|+++++....++.. .++|+.|++.++.... ++...+..+++|++|++++ +.++.+ .+..+..+++|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~-n~l~~~---~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISE----LWTSDILSLSKLRILIISH-NRIQYL---DISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCS-SCCCEE---EGGGGTTCTTCCEE
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccc----cChhhccccccccEEecCC-CccCCc---ChHHhhcccCCCEE
Confidence 5788888877667665 4678888888887543 2222234588899999998 466665 55667888899999
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-ccccccCCCCCCceEEEccCCCCcccCCCCCCCCC--
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-KLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKL-- 170 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L-- 170 (551)
+++++ .++.++.. .+ ++|++|++++|.... .+|..+..+++|++|+++++ .++. ..+..+++|
T Consensus 75 ~Ls~N-~l~~lp~~-------~l----~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~~~~l~~L~L 140 (520)
T 2z7x_B 75 DLSHN-KLVKISCH-------PT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK-SSVLPIAHLNI 140 (520)
T ss_dssp ECCSS-CCCEEECC-------CC----CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG-GGGGGGTTSCE
T ss_pred ecCCC-ceeecCcc-------cc----CCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch-hhcccccccee
Confidence 99985 57777653 33 889999998864433 35678888889999999885 4444 234556777
Q ss_pred cEEEccCCCC--ccccchhhhhccCCCccEEEEecCCCcceeccc--cCCCCccEEEEecCCC------ccccccccccc
Q 008856 171 KKIQIGECDA--LKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDN------IRTLTVEEGIQ 240 (551)
Q Consensus 171 ~~L~l~~~~~--l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~------l~~l~~~~~~~ 240 (551)
++|++++|.. ....+..+.... .....+++.++.....++.. ..+++|+.++++++.. +... ...+.
T Consensus 141 ~~L~l~~n~l~~~~~~~~~l~~l~-~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~l~ 217 (520)
T 2z7x_B 141 SKVLLVLGETYGEKEDPEGLQDFN-TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI--LAKLQ 217 (520)
T ss_dssp EEEEEEECTTTTSSCCTTTTTTCC-EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH--HHGGG
T ss_pred eEEEeecccccccccccccccccc-cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc--hhhhc
Confidence 8888888764 233333211110 12234455554433333322 3357888888887531 1111 11333
Q ss_pred ccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhh-----cCCCCCcE
Q 008856 241 CSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERL-----DNNTSLET 315 (551)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~ 315 (551)
. +++|+.|+++++. +.. .....++.... .++|++|++++|.....++..+ ..+++|+.
T Consensus 218 ~--------l~~L~~L~l~~~~-l~~-~~~~~~~~~~~-------~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 218 T--------NPKLSNLTLNNIE-TTW-NSFIRILQLVW-------HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp G--------CTTCCEEEEEEEE-EEH-HHHHHHHHHHH-------TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred c--------ccchhhccccccc-cCH-HHHHHHHHHhh-------hCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 3 5678888887743 211 00000111000 1258999999886655666666 78888999
Q ss_pred EEEecCCCccccc-ccccCC---CCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceecc
Q 008856 316 ISIYNCENLKILP-SGLHKL---HQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIG 391 (551)
Q Consensus 316 L~l~~~~~l~~~~-~~~~~~---~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~ 391 (551)
++++++ .+ .+| ..+..+ ++|++|++++|. +...+. ...+++|+.|++++|.....+|..+.++++|+.|+++
T Consensus 281 l~l~~n-~~-~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 281 HQVVSD-VF-GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEEC-CC-CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred cccccc-ce-ecchhhhhcccccCceeEEEcCCCc-cccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 999884 44 555 334333 679999999964 333331 1345699999999965444478888999999999999
Q ss_pred c-ccccccc----CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcc-ccccccccccccccccc
Q 008856 392 G-ALLSLEE----DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMM-VSFPLEDKRLGTVLRLP 465 (551)
Q Consensus 392 ~-~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 465 (551)
+ .+..++. ...+++|++|++++|.......... +..+++|++|++++|. + ..++.. .+
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~---~~~l~~L~~L~Ls~N~----l~~~~~~~---------l~ 420 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD---CSWTKSLLSLNMSSNI----LTDTIFRC---------LP 420 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS---CCCCTTCCEEECCSSC----CCGGGGGS---------CC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccch---hccCccCCEEECcCCC----CCcchhhh---------hc
Confidence 8 6665432 3567999999999998543233222 6678999999999993 4 333332 34
Q ss_pred ccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC--CccccceEeecCCc
Q 008856 466 TTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSSLLELWISGCP 524 (551)
Q Consensus 466 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 524 (551)
++|++|++++ ++++.+|..+..+++|++|++++| +++.+|... .+++|++|++++++
T Consensus 421 ~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 421 PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 7999999999 689999987789999999999995 688888752 36799999999976
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.5e-29 Score=264.80 Aligned_cols=440 Identities=14% Similarity=0.127 Sum_probs=312.1
Q ss_pred hhccCCCCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCc
Q 008856 6 ISITSLPALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHN 81 (551)
Q Consensus 6 ~~~~~~~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 81 (551)
.+|+.+++|++|++++|....++. .+++|++|++.++.... .+...+..+++|++|+++++ .++.+ ...
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n-~l~~~--~~~ 116 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS----LSSSWFGPLSSLKYLNLMGN-PYQTL--GVT 116 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS----CCHHHHTTCTTCCEEECTTC-CCSSS--CSS
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc----cCHHHhccCCCCcEEECCCC-ccccc--chh
Confidence 468999999999999997766543 36789999999987554 33333456899999999994 55543 122
Q ss_pred chhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCccc
Q 008856 82 ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSF 161 (551)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~ 161 (551)
..+..+++|++|++++|..+..+++. .+..+ ++|++|++++|..-...|..+..+++|++|+++++ ....+
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~ 187 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRI----DFAGL----TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFL 187 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTT----TTTTC----CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTH
T ss_pred hhhhccCCccEEECCCCccccccCHh----hhhcc----cccCeeeccCCcccccChhhhhccccCceEecccC-ccccc
Confidence 45788999999999998657777653 36666 99999999997655567888999999999999985 44444
Q ss_pred CC--CCCCCCCcEEEccCCCCccccc--hhhhhccCCCccEEEEecCCCcceecc------ccCCCCccEEEEecCCCcc
Q 008856 162 PE--VALPSKLKKIQIGECDALKSLP--EAWMCDTNSSLEILSIHGCRSLTYIAA------VQLPSSLKMLTIWYCDNIR 231 (551)
Q Consensus 162 ~~--~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~L~~L~l~~~~~l~ 231 (551)
+. ...+++|++|++++|. +...+ ........++|+.|+++++. +++... ...+++++.+++++|. +.
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~ 264 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCT-LN 264 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCE-EE
T ss_pred chhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccc-cchhHHHHHHHHhhhhcccccccccccc-cc
Confidence 44 2458999999999975 33321 11111234789999999863 222111 1345789999999874 22
Q ss_pred cc-cccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhh-cC
Q 008856 232 TL-TVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERL-DN 309 (551)
Q Consensus 232 ~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~ 309 (551)
.+ .++..... ....+.+++.|.+.++. +........++... ....+|++|++++|.. ..++..+ ..
T Consensus 265 ~~~~~~~~~~~----~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~------~~~~~L~~L~l~~n~l-~~ip~~~~~~ 332 (549)
T 2z81_A 265 GLGDFNPSESD----VVSELGKVETVTIRRLH-IPQFYLFYDLSTVY------SLLEKVKRITVENSKV-FLVPCSFSQH 332 (549)
T ss_dssp CCSCCCCCTTT----CCCCCTTCCEEEEESCB-CSCGGGSCCCCHHH------HHSTTCCEEEEESSCC-CCCCHHHHHH
T ss_pred ccccccccchh----hhhhhcccccccccccc-cchhhhcccchhhh------hhcccceEEEeccCcc-ccCCHHHHhc
Confidence 21 00100000 01124579999998853 22201111121100 1123699999999864 4555544 57
Q ss_pred CCCCcEEEEecCCCccc-cc---ccccCCCCcceEEecCCCCCccCCC---CCCCCCCccEEEEccCccccccccccccC
Q 008856 310 NTSLETISIYNCENLKI-LP---SGLHKLHQLREISIGSCGNLVSFPG---GGLPCAKLTALEIYDCKRLKALPKGLHNL 382 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~~-~~---~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~l 382 (551)
+++|+.|+++++. +.. +| ..+..+++|++|++++| .++.++. ....+++|++|++++| +++.+|..+..+
T Consensus 333 l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~ 409 (549)
T 2z81_A 333 LKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWP 409 (549)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCC
T ss_pred CccccEEEccCCc-cccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhccc
Confidence 9999999999954 543 33 34678899999999995 5555432 2344569999999995 677899989999
Q ss_pred Ccccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccc
Q 008856 383 STLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTV 461 (551)
Q Consensus 383 ~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
++|+.|++++ .+..++.. .+++|++|++++|.... . ...+++|++|++++|. +..+|...
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~Ls~N~l~~-~-------~~~l~~L~~L~Ls~N~----l~~ip~~~------ 470 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTC-IPQTLEVLDVSNNNLDS-F-------SLFLPRLQELYISRNK----LKTLPDAS------ 470 (549)
T ss_dssp TTCCEEECTTSCCSCCCTT-SCTTCSEEECCSSCCSC-C-------CCCCTTCCEEECCSSC----CSSCCCGG------
T ss_pred ccccEEECCCCCcccccch-hcCCceEEECCCCChhh-h-------cccCChhcEEECCCCc----cCcCCCcc------
Confidence 9999999999 77777654 34799999999997322 1 3578999999999994 77888754
Q ss_pred ccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 462 LRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 462 ~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
.+++|++|++++ +.++.++ ..+..+++|++|++++|+
T Consensus 471 --~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 471 --LFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp --GCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred --cCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCC
Confidence 678999999999 7888876 558899999999999977
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=8.8e-29 Score=263.81 Aligned_cols=473 Identities=16% Similarity=0.143 Sum_probs=319.2
Q ss_pred ceEEeCCCCCccccccc-cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSAT-DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
+.++-++.....++..+ ++++.|++.++.... ++...+..+++|++|+++++ .++.+ +...+..+++|++|
T Consensus 10 ~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n-~i~~i---~~~~~~~l~~L~~L 81 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRC-EIQTI---EDGAYQSLSHLSTL 81 (570)
T ss_dssp TEEECCSSCCSSCCSSSCSSCCEEECCSCCCCE----ECTTTTTTCSSCCEEECTTC-CCCEE---CTTTTTTCTTCCEE
T ss_pred cEEEeCCCCccccCCCccccccEEEccCCccCc----cChhHhhCCCCceEEECCCC-cCCcc---CcccccCchhCCEE
Confidence 34444444444466654 469999999887543 44445567999999999995 67776 77778899999999
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc-ccCCCCCCceEEEccCCCCcc--cCC-CCCCCC
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ-SSFSLSSLREIEIFKCSSLVS--FPE-VALPSK 169 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~--~~~-~~~~~~ 169 (551)
+++++ .++.+++. ++..+ ++|++|++++| .+..++. .+..+++|++|+++++ .++. +|. ++.+++
T Consensus 82 ~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~ 150 (570)
T 2z63_A 82 ILTGN-PIQSLALG----AFSGL----SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTN 150 (570)
T ss_dssp ECTTC-CCCEECTT----TTTTC----TTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTT
T ss_pred eCcCC-cCCccCHh----hhcCc----ccccccccccc-ccccCCCccccccccccEEecCCC-ccceecChhhhcccCC
Confidence 99996 48877763 36666 99999999996 5566654 5889999999999985 4554 444 677999
Q ss_pred CcEEEccCCCCccccchhhhhccCCCc----cEEEEecCCCcceeccccC-CCCccEEEEecCCCc-ccccccccccc--
Q 008856 170 LKKIQIGECDALKSLPEAWMCDTNSSL----EILSIHGCRSLTYIAAVQL-PSSLKMLTIWYCDNI-RTLTVEEGIQC-- 241 (551)
Q Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l-~~l~~~~~~~~-- 241 (551)
|++|++++|. +..++...+ ..+.+| +.|+++++. ++.++...+ ..+|+.++++++..- ..+ +..+..
T Consensus 151 L~~L~l~~n~-l~~~~~~~~-~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~l~ 225 (570)
T 2z63_A 151 LEHLDLSSNK-IQSIYCTDL-RVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVM--KTCIQGLA 225 (570)
T ss_dssp CCEEECTTSC-CCEECGGGG-HHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCTTHH--HHHHHTTT
T ss_pred CCEEeCcCCc-cceecHHHc-cchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccccccch--hhhhcCcc
Confidence 9999999975 444432211 112445 789998854 555544322 247889988874210 000 000000
Q ss_pred --------------------c--CCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc
Q 008856 242 --------------------S--SSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK 299 (551)
Q Consensus 242 --------------------~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 299 (551)
. ..+.....-.++.+++.++..+.. . .+..+..+. +|++|++++|..
T Consensus 226 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~-~----~~~~~~~l~------~L~~L~l~~~~l 294 (570)
T 2z63_A 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD-D----IIDLFNCLT------NVSSFSLVSVTI 294 (570)
T ss_dssp TCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEES-C----STTTTGGGT------TCSEEEEESCEE
T ss_pred ccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhh-h----chhhhcCcC------cccEEEecCccc
Confidence 0 000111111356667766533332 1 122222222 599999999854
Q ss_pred hhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccc---c
Q 008856 300 LESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKAL---P 376 (551)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~---~ 376 (551)
..++..+..+ +|++|++++ +.+..+|. ..+++|++|++++|.....++. ..+++|+.|++++|. ++.. +
T Consensus 295 -~~l~~~~~~~-~L~~L~l~~-n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~ 366 (570)
T 2z63_A 295 -ERVKDFSYNF-GWQHLELVN-CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSFKGCCS 366 (570)
T ss_dssp -CSCCBCCSCC-CCSEEEEES-CBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBEEEEEE
T ss_pred -hhhhhhhccC-CccEEeecc-CcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCcccccc
Confidence 4567777777 999999999 45667765 4789999999999765544444 455699999999964 4433 5
Q ss_pred cccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccc
Q 008856 377 KGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLE 454 (551)
Q Consensus 377 ~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 454 (551)
..+.++++|+.|++++ .+..++.. ..+++|++|++++|.......... +..+++|++|++++|. +......
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~----l~~~~~~ 439 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTH----TRVAFNG 439 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT---TTTCTTCCEEECTTSC----CEECCTT
T ss_pred ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh---hhcCCCCCEEeCcCCc----ccccchh
Confidence 6678899999999999 66666553 567999999999998543222122 6789999999999993 4443332
Q ss_pred cccccccccccccccccccccCCChh--hhhhhccCCCCcCEEEEcCCCCccccCCC--CCccccceEeecCCchHHHHh
Q 008856 455 DKRLGTVLRLPTTLTSLRIEDFPNLE--RLSSSIIDLRNLTELVLRGCPKLKYFPEK--GLPSSLLELWISGCPLIEEKC 530 (551)
Q Consensus 455 ~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~ 530 (551)
. +..+++|++|++++ +.+. .+|..+..+++|++|++++| +++.++.. ..+++|++|++++|. ++..
T Consensus 440 ~------~~~l~~L~~L~l~~-n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~- 509 (570)
T 2z63_A 440 I------FNGLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQ-LKSV- 509 (570)
T ss_dssp T------TTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCC-
T ss_pred h------hhcCCcCcEEECcC-CcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCc-CCCC-
Confidence 2 23578999999999 4665 47888899999999999996 56666332 236899999999984 2221
Q ss_pred hccCcccccccCcccceeec
Q 008856 531 RKDGGQYWDLLTHIPLVAIY 550 (551)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~ 550 (551)
..+.+...+.+..+.++
T Consensus 510 ---~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 510 ---PDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp ---CTTTTTTCTTCCEEECC
T ss_pred ---CHHHhhcccCCcEEEec
Confidence 11234455556555554
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.6e-29 Score=266.58 Aligned_cols=373 Identities=17% Similarity=0.226 Sum_probs=215.2
Q ss_pred cccccchhhhhhhhhhhhccCCCccEEecccCccccc------------------cccccC--CCCCCceEEEccCCCCc
Q 008856 100 KLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK------------------LPQSSF--SLSSLREIEIFKCSSLV 159 (551)
Q Consensus 100 ~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~------------------~~~~~~--~l~~L~~L~l~~c~~l~ 159 (551)
+++.+|+. ++.+ ++|++|++++|. +.. +|..+. ++++|++|++++|....
T Consensus 194 ~l~~ip~~-----l~~l----~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 194 NITFVSKA-----VMRL----TKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp EEEEECGG-----GGGC----TTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred CCccCCHH-----Hhcc----cCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 45555443 5555 677777777654 444 666666 67777777777665455
Q ss_pred ccCC-CCCCCCCcEEEccCCCCcc--ccchhhhhc----cCCCccEEEEecCCCcceecc---ccCCCCccEEEEecCCC
Q 008856 160 SFPE-VALPSKLKKIQIGECDALK--SLPEAWMCD----TNSSLEILSIHGCRSLTYIAA---VQLPSSLKMLTIWYCDN 229 (551)
Q Consensus 160 ~~~~-~~~~~~L~~L~l~~~~~l~--~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 229 (551)
.+|. ++.+++|++|++++|..++ .+|..+... .+++|+.|++++|. ++.++. ...+++|+.|+++++ .
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N-~ 341 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYN-Q 341 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSC-C
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCC-c
Confidence 5554 5556777777777665343 244432211 12567777777643 335554 245567777777764 3
Q ss_pred cc-cccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCC-ccEEEeccCcchhhhHhhh
Q 008856 230 IR-TLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPS-LKSLRVRYCSKLESIAERL 307 (551)
Q Consensus 230 l~-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~ 307 (551)
++ .+ | .+.. +++|++|+++++ .++. +|.++..+. + |++|++++|... .++..+
T Consensus 342 l~g~i--p-~~~~--------l~~L~~L~L~~N-~l~~------lp~~l~~l~------~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 342 LEGKL--P-AFGS--------EIKLASLNLAYN-QITE------IPANFCGFT------EQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp CEEEC--C-CCEE--------EEEESEEECCSS-EEEE------CCTTSEEEC------TTCCEEECCSSCCS-SCCSCC
T ss_pred Cccch--h-hhCC--------CCCCCEEECCCC-cccc------ccHhhhhhc------ccCcEEEccCCcCc-ccchhh
Confidence 43 44 4 4444 445777777663 3333 222222222 4 777777777543 555545
Q ss_pred cCCC--CCcEEEEecCCCccccccccc-------CCCCcceEEecCCCCCccCCCCC-CCCCCccEEEEccCcccccccc
Q 008856 308 DNNT--SLETISIYNCENLKILPSGLH-------KLHQLREISIGSCGNLVSFPGGG-LPCAKLTALEIYDCKRLKALPK 377 (551)
Q Consensus 308 ~~l~--~L~~L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~ 377 (551)
...+ +|+.|+++++.....+|..+. .+++|++|++++| .+..+|... ..+++|+.|++++| .++.+|.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~ 474 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPK 474 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCH
Confidence 4433 677777777433333354454 5567777777773 444555422 22457777777774 3456655
Q ss_pred cccc--------CCcccceeccc-cccccccC-C--cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC--
Q 008856 378 GLHN--------LSTLQDLTIGG-ALLSLEED-G--LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD-- 443 (551)
Q Consensus 378 ~~~~--------l~~L~~L~l~~-~l~~l~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-- 443 (551)
.+.. +++|+.|++++ .+..+|.. . .+++|++|++++|.... .+.. +..+++|+.|++++|.
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~---~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQ---PLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS--CCCG---GGGCSSCCEEECCSCBCT
T ss_pred HHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC--cChh---hhcCCCCCEEECCCCccc
Confidence 4322 22777777777 66666654 2 56788888888877433 2222 5677888888886541
Q ss_pred CCCc-ccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCC----------c
Q 008856 444 DDTM-MVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGL----------P 512 (551)
Q Consensus 444 ~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~----------~ 512 (551)
.+.. ...+|... ..+++|++|++++ +.++.+|..+. ++|++|++++|+ +..+..... .
T Consensus 550 s~N~l~~~~p~~l-------~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l 618 (636)
T 4eco_A 550 QGNRTLREWPEGI-------TLCPSLTQLQIGS-NDIRKVNEKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYML 618 (636)
T ss_dssp TCCBCCCCCCTTG-------GGCSSCCEEECCS-SCCCBCCSCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEE
T ss_pred ccCcccccChHHH-------hcCCCCCEEECCC-CcCCccCHhHh--CcCCEEECcCCC-CccccHHhcchhhhccccee
Confidence 0100 23445433 3567888888888 57788875543 788888888854 444432222 1
Q ss_pred cccceEeecCCchHH
Q 008856 513 SSLLELWISGCPLIE 527 (551)
Q Consensus 513 ~~L~~L~i~~c~~l~ 527 (551)
...+..++.+|+.++
T Consensus 619 ~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 619 FYDKTQDIRGCDALD 633 (636)
T ss_dssp ECCTTSEEESCGGGC
T ss_pred ecCCccccCCCcccc
Confidence 233455788888764
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=8.1e-28 Score=258.54 Aligned_cols=345 Identities=19% Similarity=0.231 Sum_probs=263.9
Q ss_pred ccccccccccCCCCCCceEEEccCCCCcc------------------cCC-CC--CCCCCcEEEccCCCCccccchhhhh
Q 008856 132 EGLVKLPQSSFSLSSLREIEIFKCSSLVS------------------FPE-VA--LPSKLKKIQIGECDALKSLPEAWMC 190 (551)
Q Consensus 132 ~~l~~~~~~~~~l~~L~~L~l~~c~~l~~------------------~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (551)
+.+..+|..+.++++|++|+++++ .++. +|. ++ .+++|++|++++|.....+|..+
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-- 269 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-- 269 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT--
T ss_pred CCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH--
Confidence 455668999999999999999996 4776 776 66 79999999999988777777652
Q ss_pred ccCCCccEEEEecCCCcce--eccc-cC------CCCccEEEEecCCCcccccccc--cccccCCCcccccCCccEEEEe
Q 008856 191 DTNSSLEILSIHGCRSLTY--IAAV-QL------PSSLKMLTIWYCDNIRTLTVEE--GIQCSSSSRRYTSYLLEHLGIR 259 (551)
Q Consensus 191 ~~~~~L~~L~l~~~~~~~~--~~~~-~~------~~~L~~L~l~~~~~l~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~ 259 (551)
..+++|++|++++|..++. +|.. .. +++|+.|+++++ .++.+ |. .+.. +++|++|+++
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~i--p~~~~l~~--------l~~L~~L~L~ 338 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTF--PVETSLQK--------MKKLGMLECL 338 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSC--CCHHHHTT--------CTTCCEEECC
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCcc--Cchhhhcc--------CCCCCEEeCc
Confidence 2348999999999764543 5543 22 389999999996 56666 87 6776 7789999999
Q ss_pred cCCCCc-ccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCC-CcEEEEecCCCcccccccccCC--C
Q 008856 260 YCPSLT-CIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTS-LETISIYNCENLKILPSGLHKL--H 335 (551)
Q Consensus 260 ~c~~l~-~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~--~ 335 (551)
++ .++ . +| .+..+. +|++|++++|... .++..+..+++ |++|++++ +.+..+|..+... +
T Consensus 339 ~N-~l~g~-ip------~~~~l~------~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 339 YN-QLEGK-LP------AFGSEI------KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVS 402 (636)
T ss_dssp SC-CCEEE-CC------CCEEEE------EESEEECCSSEEE-ECCTTSEEECTTCCEEECCS-SCCSSCCSCCCTTCSS
T ss_pred CC-cCccc-hh------hhCCCC------CCCEEECCCCccc-cccHhhhhhcccCcEEEccC-CcCcccchhhhhcccC
Confidence 94 444 4 43 122222 5999999999654 77777889999 99999999 5677888777664 4
Q ss_pred CcceEEecCCCCCccCCCCCC-------CCCCccEEEEccCcccccccccc-ccCCcccceeccc-cccccccCCc--C-
Q 008856 336 QLREISIGSCGNLVSFPGGGL-------PCAKLTALEIYDCKRLKALPKGL-HNLSTLQDLTIGG-ALLSLEEDGL--P- 403 (551)
Q Consensus 336 ~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~c~~l~~~~~~~-~~l~~L~~L~l~~-~l~~l~~~~~--~- 403 (551)
+|++|++++|......|.... ..++|+.|++++| .++.+|..+ ..+++|+.|++++ .+..++.... .
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 899999999755444444333 4569999999995 566787654 4689999999999 7777776522 1
Q ss_pred ------CCcceeEecCCchhhhhhhhhccccc--cCCCccEEEEeccCCCCccccccccccccccccccccccccccccc
Q 008856 404 ------TNLHSLVIRGNMEIWKSMIEWGRGFH--RFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 404 ------~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
++|++|++++|... .+... +. .+++|++|++++|. +..+|... ..+++|++|++++
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~~~l~~L~~L~Ls~N~----l~~ip~~~-------~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDD----FRATTLPYLVGIDLSYNS----FSKFPTQP-------LNSSTLKGFGIRN 545 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGG----GSTTTCTTCCEEECCSSC----CSSCCCGG-------GGCSSCCEEECCS
T ss_pred ccccccCCccEEECcCCcCC-ccChh----hhhccCCCcCEEECCCCC----CCCcChhh-------hcCCCCCEEECCC
Confidence 29999999999854 33322 44 89999999999994 67787765 3578999999964
Q ss_pred ------CCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCch
Q 008856 476 ------FPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525 (551)
Q Consensus 476 ------~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 525 (551)
+.-...+|..+..+++|++|++++| +++.+|.. +.++|++|++++|+.
T Consensus 546 N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCTT
T ss_pred CcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCCC
Confidence 2224567888999999999999995 56888875 448999999999963
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=8.9e-28 Score=255.27 Aligned_cols=448 Identities=15% Similarity=0.121 Sum_probs=240.2
Q ss_pred cceEEeCCCCCcccccc-ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccE
Q 008856 14 LCKMEIGGCKKVVWRSA-TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKR 92 (551)
Q Consensus 14 L~~L~l~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 92 (551)
.++++++++....++.. .++|+.|++.++.... ++...+..+++|++|++++ +.++.+ +...+..+++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~-N~l~~~---~~~~~~~l~~L~~ 104 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISE----LRMPDISFLSELRVLRLSH-NRIRSL---DFHVFLFNQDLEY 104 (562)
T ss_dssp CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCS-CCCCEE---CTTTTTTCTTCCE
T ss_pred CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccc----cChhhhccCCCccEEECCC-CCCCcC---CHHHhCCCCCCCE
Confidence 35666666655555544 3456666666655332 2222334466666666666 345544 4445566666666
Q ss_pred EeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc--ccccCCCCCCceEEEccCCCCcccCCCCCCCCC
Q 008856 93 LTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL--PQSSFSLSSLREIEIFKCSSLVSFPEVALPSKL 170 (551)
Q Consensus 93 L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L 170 (551)
|+++++ .++.++.. .+ ++|++|++++|. +..+ |..+..+++|++|+++++ .++.. .+..+++|
T Consensus 105 L~Ls~N-~l~~lp~~-------~l----~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~L 169 (562)
T 3a79_B 105 LDVSHN-RLQNISCC-------PM----ASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA-KFRQL-DLLPVAHL 169 (562)
T ss_dssp EECTTS-CCCEECSC-------CC----TTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS-BCCTT-TTGGGTTS
T ss_pred EECCCC-cCCccCcc-------cc----ccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC-ccccC-chhhhhhc
Confidence 666664 35555442 22 666666666643 3332 345666666666666653 33321 12333444
Q ss_pred --cEEEccCCCC--ccccchhhhhccCCCccEEEEecCCCcceeccc--cCCCCccEEEEecCCC-cccc-ccccccccc
Q 008856 171 --KKIQIGECDA--LKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDN-IRTL-TVEEGIQCS 242 (551)
Q Consensus 171 --~~L~l~~~~~--l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~-l~~l-~~~~~~~~~ 242 (551)
++|++++|.. ....+..+.... ...-.++++++.....++.. ..+++|+.++++++.. ...+ .....+..
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~-~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~- 247 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR- 247 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECC-EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS-
T ss_pred eeeEEEeecccccccccCcccccccC-cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhc-
Confidence 6666665442 111111100000 00112233333222211111 2234566666655320 0000 00111222
Q ss_pred CCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhh-----cCCCCCcEEE
Q 008856 243 SSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERL-----DNNTSLETIS 317 (551)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~ 317 (551)
.++++.+++.++. +.. -.....+..+. ..+|++|++++|.....++..+ ..++.|+.++
T Consensus 248 -------l~~L~~L~L~~~~-l~~-~~~~~~~~~~~-------~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 248 -------GPTLLNVTLQHIE-TTW-KCSVKLFQFFW-------PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp -------CSSCEEEEEEEEE-ECH-HHHHHHHHHHT-------TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred -------cCcceEEEecCCc-CcH-HHHHHHHHhhh-------cccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 3345555555421 110 00000111000 1147777777775443444433 3344444444
Q ss_pred EecCCCccccc-cccc---CCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-
Q 008856 318 IYNCENLKILP-SGLH---KLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG- 392 (551)
Q Consensus 318 l~~~~~l~~~~-~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~- 392 (551)
+.. +.+ .+| ..+. ...+|++|++++|. +..++. ...+++|+.|+++++.....+|..+.++++|+.|++++
T Consensus 312 ~~~-~~~-~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 312 VKN-QVF-LFSKEALYSVFAEMNIKMLSISDTP-FIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEE-CCC-SSCHHHHHHHHHTCCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred ccc-cee-ecChhhhhhhhccCcceEEEccCCC-cccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 444 222 333 1111 12568888888853 332221 13455899999998654444677788899999999988
Q ss_pred ccccccc----CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccc-cccccccccccccccccc
Q 008856 393 ALLSLEE----DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMV-SFPLEDKRLGTVLRLPTT 467 (551)
Q Consensus 393 ~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 467 (551)
.+..++. ...+++|++|++++|.......... +..+++|++|++++|. +. .++.. .+++
T Consensus 388 ~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~~l~~L~~L~l~~n~----l~~~~~~~---------l~~~ 451 (562)
T 3a79_B 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT---CAWAESILVLNLSSNM----LTGSVFRC---------LPPK 451 (562)
T ss_dssp CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC---CCCCTTCCEEECCSSC----CCGGGGSS---------CCTT
T ss_pred CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh---hcCcccCCEEECCCCC----CCcchhhh---------hcCc
Confidence 6665442 3567899999999988443232222 6678899999999983 42 23321 3368
Q ss_pred ccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC--CCccccceEeecCCc
Q 008856 468 LTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK--GLPSSLLELWISGCP 524 (551)
Q Consensus 468 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 524 (551)
|++|++++ +.++.+|.++..+++|++|++++ ++++.+|.. ..+++|+.|++++++
T Consensus 452 L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 452 VKVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CSEEECCS-SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCEEECCC-CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 99999998 68888887777899999999999 568888874 336789999998875
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.2e-27 Score=259.84 Aligned_cols=344 Identities=16% Similarity=0.195 Sum_probs=247.8
Q ss_pred cccccccccCCCCCCceEEEccCCCCcc------------------cCC-CC--CCCCCcEEEccCCCCccccchhhhhc
Q 008856 133 GLVKLPQSSFSLSSLREIEIFKCSSLVS------------------FPE-VA--LPSKLKKIQIGECDALKSLPEAWMCD 191 (551)
Q Consensus 133 ~l~~~~~~~~~l~~L~~L~l~~c~~l~~------------------~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (551)
.+..+|..+.++++|++|+++++ .++. +|. ++ .+++|++|++++|.....+|..+ .
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~ 512 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL--Y 512 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--G
T ss_pred cccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH--h
Confidence 44457888888888999999885 4665 666 44 78889999998887666666543 2
Q ss_pred cCCCccEEEEecCCCcce--eccc--------cCCCCccEEEEecCCCcccccccc--cccccCCCcccccCCccEEEEe
Q 008856 192 TNSSLEILSIHGCRSLTY--IAAV--------QLPSSLKMLTIWYCDNIRTLTVEE--GIQCSSSSRRYTSYLLEHLGIR 259 (551)
Q Consensus 192 ~~~~L~~L~l~~~~~~~~--~~~~--------~~~~~L~~L~l~~~~~l~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~ 259 (551)
.+++|+.|++++|..++. +|.. ..+++|+.|+++++ .++.+ |. .+.. +++|+.|+++
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~i--p~~~~l~~--------L~~L~~L~Ls 581 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEF--PASASLQK--------MVKLGLLDCV 581 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBC--CCHHHHTT--------CTTCCEEECT
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCcc--CChhhhhc--------CCCCCEEECC
Confidence 347889999888653442 4432 23458999999885 56555 77 6766 7789999998
Q ss_pred cCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCC-CcEEEEecCCCcccccccccCCC--C
Q 008856 260 YCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTS-LETISIYNCENLKILPSGLHKLH--Q 336 (551)
Q Consensus 260 ~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~--~ 336 (551)
++ .++. +|. +..+. +|+.|++++|... .++..+..+++ |+.|++++ +.+..+|..+...+ +
T Consensus 582 ~N-~l~~-lp~------~~~L~------~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 582 HN-KVRH-LEA------FGTNV------KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYV 645 (876)
T ss_dssp TS-CCCB-CCC------CCTTS------EESEEECCSSCCS-CCCTTSCEECTTCCEEECCS-SCCCSCCSCCCTTCSSC
T ss_pred CC-Cccc-chh------hcCCC------cceEEECcCCccc-cchHHHhhccccCCEEECcC-CCCCcCchhhhccccCC
Confidence 84 4444 431 11111 5999999998755 77777888888 99999999 55778887766654 4
Q ss_pred cceEEecCCCCCccCCC-----CCCCCCCccEEEEccCcccccccccc-ccCCcccceeccc-cccccccCCc-------
Q 008856 337 LREISIGSCGNLVSFPG-----GGLPCAKLTALEIYDCKRLKALPKGL-HNLSTLQDLTIGG-ALLSLEEDGL------- 402 (551)
Q Consensus 337 L~~L~l~~~~~l~~l~~-----~~~~~~~L~~L~l~~c~~l~~~~~~~-~~l~~L~~L~l~~-~l~~l~~~~~------- 402 (551)
|+.|++++|.-...+|. .....++|+.|++++| .++.+|..+ ..+++|+.|++++ .+..+|....
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 99999999654333332 1123458999999985 466777655 4789999999998 7777776422
Q ss_pred --CCCcceeEecCCchhhhhhhhhccccc--cCCCccEEEEeccCCCCccccccccccccccccccccccccccccc---
Q 008856 403 --PTNLHSLVIRGNMEIWKSMIEWGRGFH--RFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED--- 475 (551)
Q Consensus 403 --~~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--- 475 (551)
+++|++|++++|... .+... +. .+++|+.|++++|. +..+|... ..+++|+.|++++
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~----l~~~~l~~L~~L~Ls~N~----L~~lp~~l-------~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDD----FRATTLPYLSNMDVSYNC----FSSFPTQP-------LNSSQLKAFGIRHQRD 788 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGG----GSTTTCTTCCEEECCSSC----CSSCCCGG-------GGCTTCCEEECCCCBC
T ss_pred cccCCccEEECCCCCCc-cchHH----hhhccCCCcCEEEeCCCC----CCccchhh-------hcCCCCCEEECCCCCC
Confidence 138999999999744 33222 44 88999999999984 66777655 3678999999976
Q ss_pred ---CCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCch
Q 008856 476 ---FPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525 (551)
Q Consensus 476 ---~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 525 (551)
+.-...+|..+.++++|++|++++| .+..+|.. +.++|+.|++++|+.
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred cccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 2224567788889999999999996 46888875 457999999999974
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=8e-27 Score=255.41 Aligned_cols=364 Identities=15% Similarity=0.185 Sum_probs=261.5
Q ss_pred hhhhhccCCCccEEecccCccccc------------------cccccC--CCCCCceEEEccCCCCcccCC-CCCCCCCc
Q 008856 113 QQQLCQLSCRLEYLILSYCEGLVK------------------LPQSSF--SLSSLREIEIFKCSSLVSFPE-VALPSKLK 171 (551)
Q Consensus 113 ~~~l~~~~~~L~~L~L~~~~~l~~------------------~~~~~~--~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~ 171 (551)
+..+ ++|++|+|++|. +.. +|..+. .+++|++|++++|.....+|. ++.+++|+
T Consensus 444 l~~L----~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 444 IQRL----TKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp GGGC----TTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred HhcC----CCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 6666 999999999975 555 888887 999999999999876777776 77899999
Q ss_pred EEEccCCCCccc--cchhhhh-----ccCCCccEEEEecCCCcceecc---ccCCCCccEEEEecCCCcccccccccccc
Q 008856 172 KIQIGECDALKS--LPEAWMC-----DTNSSLEILSIHGCRSLTYIAA---VQLPSSLKMLTIWYCDNIRTLTVEEGIQC 241 (551)
Q Consensus 172 ~L~l~~~~~l~~--~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 241 (551)
+|++++|..+.. +|..+.. ..+++|+.|++++|. ++.+|. ...+++|+.|+++++ .++.+ | .+..
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~l--p-~~~~ 593 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHL--E-AFGT 593 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTS-CCCBC--C-CCCT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCC-Ccccc--h-hhcC
Confidence 999999874553 5554322 223689999999965 557776 366789999999985 56665 6 6665
Q ss_pred cCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCC--CCcEEEEe
Q 008856 242 SSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNT--SLETISIY 319 (551)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~ 319 (551)
+++|+.|+++++. +.. +|..+..+. .+|++|++++|... .++..+..++ +|+.|+++
T Consensus 594 --------L~~L~~L~Ls~N~-l~~------lp~~l~~l~-----~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 594 --------NVKLTDLKLDYNQ-IEE------IPEDFCAFT-----DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp --------TSEESEEECCSSC-CSC------CCTTSCEEC-----TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred --------CCcceEEECcCCc-ccc------chHHHhhcc-----ccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 6789999999944 444 333222222 13999999999754 6666666654 49999999
Q ss_pred cCCCccccc---cccc--CCCCcceEEecCCCCCccCCCCCC-CCCCccEEEEccCcccccccccccc--------CCcc
Q 008856 320 NCENLKILP---SGLH--KLHQLREISIGSCGNLVSFPGGGL-PCAKLTALEIYDCKRLKALPKGLHN--------LSTL 385 (551)
Q Consensus 320 ~~~~l~~~~---~~~~--~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~--------l~~L 385 (551)
+|.....+| ..+. .+++|++|++++| .+..+|.... .+++|+.|++++| .++.+|..+.. +++|
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCc
Confidence 954322222 2233 3458999999995 5667776332 4569999999995 57788775543 3399
Q ss_pred cceeccc-cccccccC-C--cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC-----CCCcccccccccc
Q 008856 386 QDLTIGG-ALLSLEED-G--LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD-----DDTMMVSFPLEDK 456 (551)
Q Consensus 386 ~~L~l~~-~l~~l~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~~~~~~ 456 (551)
+.|++++ .+..+|.. . .+++|+.|++++|.... + +.. +..+++|+.|++++|. .. ...+|...
T Consensus 731 ~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-l-p~~---l~~L~~L~~L~Ls~N~~ls~N~l--~~~ip~~l- 802 (876)
T 4ecn_A 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-F-PTQ---PLNSSQLKAFGIRHQRDAEGNRI--LRQWPTGI- 802 (876)
T ss_dssp CEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-C-CCG---GGGCTTCCEEECCCCBCTTCCBC--CCCCCTTG-
T ss_pred cEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-c-chh---hhcCCCCCEEECCCCCCcccccc--cccChHHH-
Confidence 9999999 77788765 3 68999999999998443 2 332 6789999999998742 11 33455443
Q ss_pred cccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCC----------ccccceEeecCCchH
Q 008856 457 RLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGL----------PSSLLELWISGCPLI 526 (551)
Q Consensus 457 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~----------~~~L~~L~i~~c~~l 526 (551)
..+++|+.|++++ +.+..+|..+. ++|+.|++++|+ +..+....+ +..-+..+|.+|+.+
T Consensus 803 ------~~L~~L~~L~Ls~-N~L~~Ip~~l~--~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L 872 (876)
T 4ecn_A 803 ------TTCPSLIQLQIGS-NDIRKVDEKLT--PQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872 (876)
T ss_dssp ------GGCSSCCEEECCS-SCCCBCCSCCC--SSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred ------hcCCCCCEEECCC-CCCCccCHhhc--CCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCc
Confidence 3678999999999 67788986653 799999999965 554433222 112233467888876
Q ss_pred H
Q 008856 527 E 527 (551)
Q Consensus 527 ~ 527 (551)
.
T Consensus 873 ~ 873 (876)
T 4ecn_A 873 G 873 (876)
T ss_dssp C
T ss_pred c
Confidence 4
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=244.83 Aligned_cols=428 Identities=15% Similarity=0.090 Sum_probs=289.7
Q ss_pred CCcceEEeCCCCCcccc----ccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWR----SATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
++|++|++++|....++ ..+++|++|++.++.... +++..+..+++|++|++++ +.++.+ +.. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~-N~l~~l---p~~---~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSH-NKLVKI---SCH---PT 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCS-SCCCEE---ECC---CC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCC-Cceeec---Ccc---cc
Confidence 78999999999876654 337889999999987553 3333356689999999999 577777 544 78
Q ss_pred CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCC--ceEEEccCCC--CcccCC
Q 008856 88 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSL--REIEIFKCSS--LVSFPE 163 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~ 163 (551)
++|++|++++|. ++.++.. ..++.+ ++|++|++++|. +.. ..+..+++| ++|+++++.. ....+.
T Consensus 90 ~~L~~L~L~~N~-l~~~~~p---~~~~~l----~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 90 VNLKHLDLSFNA-FDALPIC---KEFGNM----SQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp CCCSEEECCSSC-CSSCCCC---GGGGGC----TTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred CCccEEeccCCc-cccccch---hhhccC----CcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccc
Confidence 999999999964 7664321 237777 999999999964 333 346677788 9999998643 222222
Q ss_pred -CCCCC-CCcEEEccCCCCccccchhhhhccCCCccEEEEecCC-------CcceeccccCCCCccEEEEecCCCccccc
Q 008856 164 -VALPS-KLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCR-------SLTYIAAVQLPSSLKMLTIWYCDNIRTLT 234 (551)
Q Consensus 164 -~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 234 (551)
+..+. +...++++++.....++.... ..+++|+.|++++|. ....++....+++|+.|+++++. +....
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~ 236 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE-TTWNS 236 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE-EEHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecchhhhccccchhhccccccc-cCHHH
Confidence 22222 223556666654444433211 234789999998864 22222323556789999988752 22110
Q ss_pred ccccccccCCCcccccCCccEEEEecCCCCc-ccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhH-hhhcCC--
Q 008856 235 VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLT-CIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIA-ERLDNN-- 310 (551)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l-- 310 (551)
+.++.. ....++|++|++++|. +. . +|...+.....++. +|+.+++++|.. .++ ..+..+
T Consensus 237 -~~~~~~-----~~~~~~L~~L~l~~n~-l~~~-~p~~~~~~~~~~l~------~L~~l~l~~n~~--~~p~~~~~~~~~ 300 (520)
T 2z7x_B 237 -FIRILQ-----LVWHTTVWYFSISNVK-LQGQ-LDFRDFDYSGTSLK------ALSIHQVVSDVF--GFPQSYIYEIFS 300 (520)
T ss_dssp -HHHHHH-----HHHTSSCSEEEEEEEE-EESC-CCCCCCCCCSCCCC------EEEEEEEEECCC--CSCTHHHHHHHH
T ss_pred -HHHHHH-----HhhhCcccEEEeeccc-ccCc-cccchhhcccccCc------eeEeccccccce--ecchhhhhcccc
Confidence 111110 0113369999999854 22 2 33221110002222 488999988865 222 222222
Q ss_pred -CCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccc---ccccccccCCccc
Q 008856 311 -TSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLK---ALPKGLHNLSTLQ 386 (551)
Q Consensus 311 -~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~---~~~~~~~~l~~L~ 386 (551)
.+|+.|+++++ .+..++ ....+++|++|++++|.-...++.....+++|+.|++++|. ++ .+|..+..+++|+
T Consensus 301 ~~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 301 NMNIKNFTVSGT-RMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQ 377 (520)
T ss_dssp TCCCSEEEEESS-CCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCC
T ss_pred cCceeEEEcCCC-cccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCC
Confidence 67999999995 454442 12578999999999965444466666667799999999964 44 4556788999999
Q ss_pred ceeccc-cccc-cccC--CcCCCcceeEecCCchhhhhhhhhccccccC-CCccEEEEeccCCCCccccccccccccccc
Q 008856 387 DLTIGG-ALLS-LEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRF-SSLRHLTIDGCDDDTMMVSFPLEDKRLGTV 461 (551)
Q Consensus 387 ~L~l~~-~l~~-l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
.|++++ .+.. ++.. ..+++|++|++++|...... + ..+ ++|+.|++++|. +..+|...
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~------~~l~~~L~~L~Ls~N~----l~~ip~~~------ 440 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-F------RCLPPRIKVLDLHSNK----IKSIPKQV------ 440 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG-G------GSCCTTCCEEECCSSC----CCCCCGGG------
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcch-h------hhhcccCCEEECCCCc----ccccchhh------
Confidence 999999 7776 7754 45789999999999844322 2 223 799999999994 77888755
Q ss_pred ccccccccccccccCCChhhhhhh-ccCCCCcCEEEEcCCC
Q 008856 462 LRLPTTLTSLRIEDFPNLERLSSS-IIDLRNLTELVLRGCP 501 (551)
Q Consensus 462 ~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 501 (551)
..+++|++|++++ +.++.+|.. +..+++|++|++++|+
T Consensus 441 -~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 441 -VKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 2678999999999 689999865 8889999999999965
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.5e-25 Score=241.82 Aligned_cols=217 Identities=16% Similarity=0.120 Sum_probs=155.1
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc---cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL---PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALE 365 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 365 (551)
|+.+++..+..... .....+++|+.+++++ +.+... +.....+.+|+++++..+ .....+.....+++|+.++
T Consensus 351 L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~l~ 426 (635)
T 4g8a_A 351 LKRLTFTSNKGGNA--FSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQLEHLD 426 (635)
T ss_dssp CCEEEEESCCSCCB--CCCCBCTTCCEEECCS-SCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTCCEEE
T ss_pred hhhcccccccCCCC--cccccccccccchhhc-cccccccccccchhhhhhhhhhhcccc-ccccccccccccccccchh
Confidence 66666666543221 1234577888888877 434322 334456778888888874 3334444555567899999
Q ss_pred EccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
+.+++.....+ ..+..+++++.++++. .+...... ..++.|++|++++|.......+.. +..+++|++|++++
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQ 503 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTT
T ss_pred hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCC
Confidence 98876554443 4567889999999988 55555443 457899999999998666555444 78899999999999
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCCCccccCCCC---Cccccce
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFPEKG---LPSSLLE 517 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~ 517 (551)
|. +..++... +..+++|++|++++ |+++.++ ..+.++++|++|++++ ++++.++... ++++|+.
T Consensus 504 N~----L~~l~~~~------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 504 CQ----LEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp SC----CCEECTTT------TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCE
T ss_pred Cc----cCCcChHH------HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCE
Confidence 94 77765533 34678999999999 7898886 5688899999999999 5677776643 3478999
Q ss_pred EeecCCc
Q 008856 518 LWISGCP 524 (551)
Q Consensus 518 L~i~~c~ 524 (551)
|+++++|
T Consensus 572 L~L~~Np 578 (635)
T 4g8a_A 572 LNLTQND 578 (635)
T ss_dssp EECTTCC
T ss_pred EEeeCCC
Confidence 9998754
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4.7e-25 Score=228.66 Aligned_cols=346 Identities=15% Similarity=0.201 Sum_probs=182.1
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
++++++|+++++ .++.+ + .+..+++|++|++++| .++.+++ +..+ ++|++|++++| .+..++
T Consensus 45 l~~l~~L~l~~~-~i~~l---~--~~~~l~~L~~L~Ls~n-~l~~~~~------~~~l----~~L~~L~l~~n-~l~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSI---D--GVEYLNNLTQINFSNN-QLTDITP------LKNL----TKLVDILMNNN-QIADIT 106 (466)
T ss_dssp HHTCCEEECCSS-CCCCC---T--TGGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSS-CCCCCG
T ss_pred hccccEEecCCC-CCccC---c--chhhhcCCCEEECCCC-ccCCchh------hhcc----ccCCEEECCCC-ccccCh
Confidence 456666666663 34433 2 2455666666666664 3555433 3333 66666666664 334444
Q ss_pred cccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCC
Q 008856 139 QSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSS 218 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 218 (551)
. +..+++|++|++++| .++.++++..+++|++|++++|. +..++.. ..+++|+.|++.+ .+..++....+++
T Consensus 107 ~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~l~~--~~~~~~~~~~l~~ 178 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISAL---SGLTSLQQLSFGN--QVTDLKPLANLTT 178 (466)
T ss_dssp G-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGGG---TTCTTCSEEEEEE--SCCCCGGGTTCTT
T ss_pred h-hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChhh---ccCCcccEeecCC--cccCchhhccCCC
Confidence 3 556666666666664 45555555556666666666543 3333322 2335555555543 1222222233344
Q ss_pred ccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCc
Q 008856 219 LKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCS 298 (551)
Q Consensus 219 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~ 298 (551)
|+.|+++++ .++.+ + .+.. +++ |++|++++|.
T Consensus 179 L~~L~l~~n-~l~~~--~-~l~~--------l~~------------------------------------L~~L~l~~n~ 210 (466)
T 1o6v_A 179 LERLDISSN-KVSDI--S-VLAK--------LTN------------------------------------LESLIATNNQ 210 (466)
T ss_dssp CCEEECCSS-CCCCC--G-GGGG--------CTT------------------------------------CSEEECCSSC
T ss_pred CCEEECcCC-cCCCC--h-hhcc--------CCC------------------------------------CCEEEecCCc
Confidence 444444443 12222 1 1111 223 5555555554
Q ss_pred chhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccc
Q 008856 299 KLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKG 378 (551)
Q Consensus 299 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 378 (551)
.....+ ++.+++|+.|++++ +.+..+ ..+..+++|++|++++| .+..++. ...+++|+.|++++| .++.++.
T Consensus 211 l~~~~~--~~~l~~L~~L~l~~-n~l~~~-~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~- 282 (466)
T 1o6v_A 211 ISDITP--LGILTNLDELSLNG-NQLKDI-GTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGAN-QISNISP- 282 (466)
T ss_dssp CCCCGG--GGGCTTCCEEECCS-SCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-
T ss_pred cccccc--ccccCCCCEEECCC-CCcccc-hhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCC-ccCcccc-
Confidence 322221 44456666666665 334444 23455666666666664 3333322 223346666666663 3444443
Q ss_pred cccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccc
Q 008856 379 LHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKR 457 (551)
Q Consensus 379 ~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 457 (551)
+..+++|+.|++++ .+..++....+++|++|++++|.... ..+ +..+++|++|++++|. +..++.-
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~-~~~-----~~~l~~L~~L~l~~n~----l~~~~~l--- 349 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISP-----VSSLTKLQRLFFYNNK----VSDVSSL--- 349 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CGG-----GGGCTTCCEEECCSSC----CCCCGGG---
T ss_pred ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCC-chh-----hccCccCCEeECCCCc----cCCchhh---
Confidence 55666677777766 55555555556777777777776332 221 4567777788877773 4444321
Q ss_pred ccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccC
Q 008856 458 LGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 458 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 507 (551)
..+++|+.|++++ +.+..++. +..+++|++|++++| .++.+|
T Consensus 350 -----~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p 391 (466)
T 1o6v_A 350 -----ANLTNINWLSAGH-NQISDLTP-LANLTRITQLGLNDQ-AWTNAP 391 (466)
T ss_dssp -----TTCTTCCEEECCS-SCCCBCGG-GTTCTTCCEEECCCE-EEECCC
T ss_pred -----ccCCCCCEEeCCC-CccCccch-hhcCCCCCEEeccCC-cccCCc
Confidence 2556778888877 45555543 667788888888874 354444
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.9e-25 Score=229.83 Aligned_cols=195 Identities=26% Similarity=0.307 Sum_probs=81.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|++|++++|... .++ .++.+++|++|++++ +.+..+|.. +++|++|++++| .+..+|.. +++|+.|+++
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~-N~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADN-NLLKTLPDL---PPSLEALNVRDN-YLTDLPEL---PQSLTFLDVS 285 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS-SCCSSCCSC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCC-CcCCccccc---ccccCEEECCCC-cccccCcc---cCcCCEEECc
Confidence 3666666666432 333 255666666666666 344444432 356666666663 34444432 1356666666
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+| .++.++.. .++|+.|++++ .+..++. .+++|++|++++|.... .+ ..+++|++|++++|.
T Consensus 286 ~N-~l~~l~~~---~~~L~~L~l~~N~l~~i~~--~~~~L~~L~Ls~N~l~~--lp------~~~~~L~~L~L~~N~--- 348 (454)
T 1jl5_A 286 EN-IFSGLSEL---PPNLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIE--LP------ALPPRLERLIASFNH--- 348 (454)
T ss_dssp SS-CCSEESCC---CTTCCEEECCSSCCSEECC--CCTTCCEEECCSSCCSC--CC------CCCTTCCEEECCSSC---
T ss_pred CC-ccCcccCc---CCcCCEEECcCCcCCcccC--CcCcCCEEECCCCcccc--cc------ccCCcCCEEECCCCc---
Confidence 63 24333321 14566666665 4444432 22466666666665221 11 124566666666662
Q ss_pred cccccccccccccccccccccccccccccCCChhh---hhhhccCC-------------CCcCEEEEcCCCCccccCCCC
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLER---LSSSIIDL-------------RNLTELVLRGCPKLKYFPEKG 510 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~~~l-------------~~L~~L~l~~c~~l~~l~~~~ 510 (551)
+..+|. .+++|++|++++ +.+.. +|.++..+ ++|++|++++ +.++.++.
T Consensus 349 -l~~lp~----------~l~~L~~L~L~~-N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~-N~l~~~~~-- 413 (454)
T 1jl5_A 349 -LAEVPE----------LPQNLKQLHVEY-NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET-NPLREFPD-- 413 (454)
T ss_dssp -CSCCCC----------CCTTCCEEECCS-SCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred -cccccc----------hhhhccEEECCC-CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC-CcCCcccc--
Confidence 445554 235666666666 44444 33444444 8899999999 45665533
Q ss_pred CccccceEeecCCc
Q 008856 511 LPSSLLELWISGCP 524 (551)
Q Consensus 511 ~~~~L~~L~i~~c~ 524 (551)
++++++.|.+.+|.
T Consensus 414 iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 414 IPESVEDLRMNSER 427 (454)
T ss_dssp --------------
T ss_pred chhhHhheeCcCcc
Confidence 56788888888874
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.5e-24 Score=224.96 Aligned_cols=348 Identities=16% Similarity=0.189 Sum_probs=213.3
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+.+++.|++.++.... +++ ...+++|++|+++++ .++.+ +. +..+++|++|++++| .+..+++
T Consensus 45 l~~l~~L~l~~~~i~~----l~~--~~~l~~L~~L~Ls~n-~l~~~---~~--~~~l~~L~~L~l~~n-~l~~~~~---- 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS----IDG--VEYLNNLTQINFSNN-QLTDI---TP--LKNLTKLVDILMNNN-QIADITP---- 107 (466)
T ss_dssp HHTCCEEECCSSCCCC----CTT--GGGCTTCCEEECCSS-CCCCC---GG--GTTCTTCCEEECCSS-CCCCCGG----
T ss_pred hccccEEecCCCCCcc----Ccc--hhhhcCCCEEECCCC-ccCCc---hh--hhccccCCEEECCCC-ccccChh----
Confidence 5566666666654332 221 234677777777773 45544 32 566777777777775 3555433
Q ss_pred hhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMC 190 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (551)
+..+ ++|++|++++| .+..++. +..+++|++|++++| .+..++.+..+++|++|++++ .+...+..
T Consensus 108 --~~~l----~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~--~~~~~~~~--- 173 (466)
T 1o6v_A 108 --LANL----TNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGN--QVTDLKPL--- 173 (466)
T ss_dssp --GTTC----TTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEE--SCCCCGGG---
T ss_pred --hcCC----CCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCC-ccCCChhhccCCcccEeecCC--cccCchhh---
Confidence 3444 77777777765 3444543 667777777777764 455555566677777777753 23333322
Q ss_pred ccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccC
Q 008856 191 DTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSK 270 (551)
Q Consensus 191 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 270 (551)
..+++|+.|++++|. ++.++....+++|+.|+++++ .+..+ +. +.. +++|+.|+++++ .++. ++.
T Consensus 174 ~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~--~~-~~~--------l~~L~~L~l~~n-~l~~-~~~ 238 (466)
T 1o6v_A 174 ANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNN-QISDI--TP-LGI--------LTNLDELSLNGN-QLKD-IGT 238 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS-CCCCC--GG-GGG--------CTTCCEEECCSS-CCCC-CGG
T ss_pred ccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCC-ccccc--cc-ccc--------cCCCCEEECCCC-Cccc-chh
Confidence 344677777777653 444444455677777777775 33333 21 222 456778877774 3443 111
Q ss_pred CCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCcc
Q 008856 271 NELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVS 350 (551)
Q Consensus 271 ~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~ 350 (551)
+..+ ++|++|++++|......+ +..+++|+.|++++ +.+..++. +..+++|++|++++| .+..
T Consensus 239 ------l~~l------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~L~~n-~l~~ 301 (466)
T 1o6v_A 239 ------LASL------TNLTDLDLANNQISNLAP--LSGLTKLTELKLGA-NQISNISP-LAGLTALTNLELNEN-QLED 301 (466)
T ss_dssp ------GGGC------TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS-SCCCCCGG-GTTCTTCSEEECCSS-CCSC
T ss_pred ------hhcC------CCCCEEECCCCccccchh--hhcCCCCCEEECCC-CccCcccc-ccCCCccCeEEcCCC-cccC
Confidence 1111 148888888875433322 67788888888888 45665544 667888888888885 4444
Q ss_pred CCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccc
Q 008856 351 FPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFH 429 (551)
Q Consensus 351 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 429 (551)
++. ...+++|+.|++++|. ++.++. +..+++|+.|++++ .+..++....+++|++|++++|+... ..+ +.
T Consensus 302 ~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-----~~ 372 (466)
T 1o6v_A 302 ISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD-LTP-----LA 372 (466)
T ss_dssp CGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CGG-----GT
T ss_pred chh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCc-cch-----hh
Confidence 443 2345588888888854 444443 67788888888887 66666655667888888888887433 222 56
Q ss_pred cCCCccEEEEeccCCCCcccccccc
Q 008856 430 RFSSLRHLTIDGCDDDTMMVSFPLE 454 (551)
Q Consensus 430 ~l~~L~~L~l~~~~~~~~~~~~~~~ 454 (551)
.+++|+.|++++|. +..+|..
T Consensus 373 ~l~~L~~L~l~~n~----~~~~p~~ 393 (466)
T 1o6v_A 373 NLTRITQLGLNDQA----WTNAPVN 393 (466)
T ss_dssp TCTTCCEEECCCEE----EECCCBC
T ss_pred cCCCCCEEeccCCc----ccCCchh
Confidence 77888888888883 5555543
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.8e-24 Score=231.86 Aligned_cols=439 Identities=15% Similarity=0.101 Sum_probs=271.8
Q ss_pred CcceEEeCCCCCcccccc----ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccC
Q 008856 13 ALCKMEIGGCKKVVWRSA----TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 88 (551)
Q Consensus 13 ~L~~L~l~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 88 (551)
++++|+|+++....++.. +++|+.|++.+|... .++...+..+++|++|++++ +.++.+ +...|..++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~-N~l~~l---~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTG-NPIQSL---ALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTT-CCCCEE---CGGGGTTCT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccC-CcCCCC---CHHHhcCCC
Confidence 799999999987766542 677999999998644 46666677899999999999 578888 878889999
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-ccccccCCCCCCceEEEccCCCCcccCC--CC
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-KLPQSSFSLSSLREIEIFKCSSLVSFPE--VA 165 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~ 165 (551)
+|++|++++| +++.+++. .++.+ ++|++|++++|..-. ..|..+..+++|++|+++++ .++.+++ +.
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~----~~~~L----~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~ 194 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENF----PIGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLR 194 (635)
T ss_dssp TCCEEECTTS-CCCCSTTC----CCTTC----TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGH
T ss_pred CCCEEECCCC-cCCCCChh----hhhcC----cccCeeccccCccccCCCchhhccchhhhhhcccCc-ccccccccccc
Confidence 9999999996 58888763 36666 999999999964322 45677888999999999985 5554432 11
Q ss_pred CCC----CCcEEEccCCCCccccchhh-----------------------hhccCCCccEEEEe--cCCCcce-------
Q 008856 166 LPS----KLKKIQIGECDALKSLPEAW-----------------------MCDTNSSLEILSIH--GCRSLTY------- 209 (551)
Q Consensus 166 ~~~----~L~~L~l~~~~~l~~~~~~~-----------------------~~~~~~~L~~L~l~--~~~~~~~------- 209 (551)
.++ .+..++++.+. +..++... ...+...++...+. .......
T Consensus 195 ~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp HHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred chhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence 111 12233333321 11111100 00011222222111 0000000
Q ss_pred ------------------------ec-cccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCC
Q 008856 210 ------------------------IA-AVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSL 264 (551)
Q Consensus 210 ------------------------~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 264 (551)
.. ......+++.+.+.++. +..+ + .+.. ...++.|++.++. +
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~--~-~~~~--------~~~L~~L~l~~~~-~ 340 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERV--K-DFSY--------NFGWQHLELVNCK-F 340 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEEC--G-GGGS--------CCCCSEEEEESCE-E
T ss_pred ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccc--c-cccc--------chhhhhhhccccc-c
Confidence 00 00112344444444321 1111 0 0111 1234444444421 1
Q ss_pred cccccCCCchhhhhhcccc----------CCCCCccEEEeccCcchh--hhHhhhcCCCCCcEEEEecCCCccccccccc
Q 008856 265 TCIFSKNELPATLESLEVG----------NLPPSLKSLRVRYCSKLE--SIAERLDNNTSLETISIYNCENLKILPSGLH 332 (551)
Q Consensus 265 ~~~~~~~~~~~~l~~l~~~----------~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 332 (551)
.. ++...++. +..+.+. .-.++|+.++++.|.... ..+..+..+.+|+.+++.. +.....+..+.
T Consensus 341 ~~-~~~~~l~~-L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~ 417 (635)
T 4g8a_A 341 GQ-FPTLKLKS-LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF-NGVITMSSNFL 417 (635)
T ss_dssp SS-CCCCBCTT-CCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS-CSEEEECSCCT
T ss_pred cC-cCcccchh-hhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccc-ccccccccccc
Confidence 11 11111100 1111100 001259999999886532 2344566788999999988 44555566677
Q ss_pred CCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEccCccccccccccccCCcccceeccc-c-ccccc-cC-CcCCCcc
Q 008856 333 KLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-A-LLSLE-ED-GLPTNLH 407 (551)
Q Consensus 333 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~-l~~l~-~~-~~~~~L~ 407 (551)
.+++|+.+++.+++.....+. ....+++++.++++++..-...+..+..+++|+.|++++ . ...+. .. ..+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 889999999988655544433 344556899999998654444556678889999999988 3 33333 22 4578999
Q ss_pred eeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhc
Q 008856 408 SLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSI 486 (551)
Q Consensus 408 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~ 486 (551)
+|++++|. +....+.. +.++++|++|++++|. +..++... +..+++|++|++++ |.+..++ ..+
T Consensus 498 ~L~Ls~N~-L~~l~~~~---f~~l~~L~~L~Ls~N~----l~~l~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l 562 (635)
T 4g8a_A 498 FLDLSQCQ-LEQLSPTA---FNSLSSLQVLNMSHNN----FFSLDTFP------YKCLNSLQVLDYSL-NHIMTSKKQEL 562 (635)
T ss_dssp EEECTTSC-CCEECTTT---TTTCTTCCEEECTTSC----CCBCCCGG------GTTCTTCCEEECTT-SCCCBCCSSCT
T ss_pred EEECCCCc-cCCcChHH---HcCCCCCCEEECCCCc----CCCCChhH------HhCCCCCCEEECCC-CcCCCCCHHHH
Confidence 99999997 44344443 7889999999999984 77776543 34678999999999 7888775 566
Q ss_pred cCC-CCcCEEEEcCCC
Q 008856 487 IDL-RNLTELVLRGCP 501 (551)
Q Consensus 487 ~~l-~~L~~L~l~~c~ 501 (551)
.++ ++|++|+++++|
T Consensus 563 ~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCCTTCCEEECTTCC
T ss_pred HhhhCcCCEEEeeCCC
Confidence 677 689999998855
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.5e-24 Score=224.47 Aligned_cols=360 Identities=14% Similarity=0.119 Sum_probs=165.6
Q ss_pred ccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccch
Q 008856 27 WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVA 106 (551)
Q Consensus 27 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 106 (551)
++...++|++|++.++.... ++...+..+++|++|+++++.....+ +...+..+++|++|++++|. ++.+.+
T Consensus 25 lp~l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 96 (455)
T 3v47_A 25 VPELPAHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYNQ-FLQLET 96 (455)
T ss_dssp CCCCCTTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTCT-TCEECT
T ss_pred CCCCCCccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCCc-cCccCh
Confidence 44423456666666654332 22333445667777777764332233 44455666777777777643 555433
Q ss_pred hhhhhhhhhhhccCCCccEEecccCccccccccc--cCCCCCCceEEEccCCCCcccCC---CCCCCCCcEEEccCCCCc
Q 008856 107 EEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS--SFSLSSLREIEIFKCSSLVSFPE---VALPSKLKKIQIGECDAL 181 (551)
Q Consensus 107 ~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~--~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l 181 (551)
. ++..+ ++|++|++++|..-...+.. +..+++|++|+++++ .++.+.+ +..+++|++|++++|...
T Consensus 97 ~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 97 G----AFNGL----ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp T----TTTTC----TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred h----hccCc----ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCccc
Confidence 2 24545 67777777765332222322 566667777777664 3444422 345667777777665422
Q ss_pred cccchhhhhccCCCccEEEEecCCCcceeccc----------cCCCCccEEEEecCCCcccccccccccccCCCcccccC
Q 008856 182 KSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV----------QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSY 251 (551)
Q Consensus 182 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 251 (551)
...+..+......+++.|+++++. +..++.. ...++|+.|+++++.--... +..+.. .....
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~-----~~~~~ 239 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM--AKRFFD-----AIAGT 239 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH--HHHHHH-----HTTTC
T ss_pred ccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccc--hhhhhc-----ccccc
Confidence 222222211222456666666532 2222211 11245666666664322222 332222 01123
Q ss_pred CccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-ccc
Q 008856 252 LLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSG 330 (551)
Q Consensus 252 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~ 330 (551)
+|+.|+++++......+....++. .....+. -...++|+.|+++++ .+..+ +..
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~-----------------------~~~~~~L~~L~l~~n-~l~~~~~~~ 294 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKD-PDNFTFK-----------------------GLEASGVKTCDLSKS-KIFALLKSV 294 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCC-CCTTTTG-----------------------GGTTSCCCEEECCSS-CCCEECTTT
T ss_pred ceeeEeeccccccccccchhhhcc-Ccccccc-----------------------cccccCceEEEecCc-cccccchhh
Confidence 466666655432221111111110 0000000 001234555555552 22222 444
Q ss_pred ccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEEEccCcccccc-ccccccCCcccceeccc-cccccccC--CcCCC
Q 008856 331 LHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALEIYDCKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTN 405 (551)
Q Consensus 331 ~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~ 405 (551)
+..+++|++|++++|. +..+ +.....+++|+.|++++|. ++.+ +..+.++++|+.|++++ .+..++.. ..+++
T Consensus 295 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 4445555555555532 2222 2233333455555555532 3333 34455555555555555 44444221 33556
Q ss_pred cceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 406 LHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 406 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
|++|++++|... ...+.. +..+++|++|++++|
T Consensus 373 L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 373 LKELALDTNQLK-SVPDGI---FDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCEEECCSSCCS-CCCTTT---TTTCTTCCEEECCSS
T ss_pred ccEEECCCCccc-cCCHhH---hccCCcccEEEccCC
Confidence 666666666522 222221 456667777777766
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=5.5e-24 Score=226.05 Aligned_cols=429 Identities=14% Similarity=0.086 Sum_probs=274.4
Q ss_pred CCCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcc
Q 008856 11 LPALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD 86 (551)
Q Consensus 11 ~~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 86 (551)
.++|++|++++|....++. .+++|+.|++.++... .++...+..+++|++|++++ +.++.+ +.. .
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~-N~l~~l---p~~---~ 119 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSH-NRLQNI---SCC---P 119 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC----EECTTTTTTCTTCCEEECTT-SCCCEE---CSC---C
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC----cCCHHHhCCCCCCCEEECCC-CcCCcc---Ccc---c
Confidence 3789999999998776553 3678999999998654 34444466799999999999 577877 654 7
Q ss_pred cCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCC--ceEEEccCCCC-cccCC
Q 008856 87 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSL--REIEIFKCSSL-VSFPE 163 (551)
Q Consensus 87 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L--~~L~l~~c~~l-~~~~~ 163 (551)
+++|++|++++| .++.++.. ..+..+ ++|++|+++++. +.. ..+..+++| ++|+++++... +...+
T Consensus 120 l~~L~~L~Ls~N-~l~~l~~p---~~~~~l----~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 120 MASLRHLDLSFN-DFDVLPVC---KEFGNL----TKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp CTTCSEEECCSS-CCSBCCCC---GGGGGC----TTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred cccCCEEECCCC-CccccCch---Hhhccc----CcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCc
Confidence 999999999996 48776532 237777 999999999964 333 245555666 99999986430 22221
Q ss_pred --CCCCC-CCcEEEccCCCCccccchhhhhccCCCccEEEEecCCC-ccee----ccccCCCCccEEEEecCCCccccc-
Q 008856 164 --VALPS-KLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRS-LTYI----AAVQLPSSLKMLTIWYCDNIRTLT- 234 (551)
Q Consensus 164 --~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~----~~~~~~~~L~~L~l~~~~~l~~l~- 234 (551)
+..++ ..-.++++++.....++.. .....++|+.++++++.. ...+ +.....++++.+++.++. +..-.
T Consensus 189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~ 266 (562)
T 3a79_B 189 ESLQIPNTTVLHLVFHPNSLFSVQVNM-SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCS 266 (562)
T ss_dssp CEEEECCEEEEEEEECSSSCCCCCCEE-EESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHH
T ss_pred ccccccCcceEEEEecCccchhhhhhh-cccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc-CcHHHH
Confidence 11111 1113455555433322221 112236788888887531 1111 111344677778777642 21100
Q ss_pred --ccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc--hhhhHhhhcCC
Q 008856 235 --VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK--LESIAERLDNN 310 (551)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~l 310 (551)
++... ...+|++|++++|.--.. +|...+.....+++ +|+.+++..+.. .......+...
T Consensus 267 ~~~~~~~---------~~~~L~~L~l~~n~l~~~-ip~~~~~~~~~~L~------~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 267 VKLFQFF---------WPRPVEYLNIYNLTITER-IDREEFTYSETALK------SLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp HHHHHHH---------TTSSEEEEEEEEEEECSC-CCCCCCCCCSCSCC------EEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred HHHHHhh---------hcccccEEEEeccEeecc-ccchhhhcccccch------heehhhcccceeecChhhhhhhhcc
Confidence 01111 123688999888542212 33322111001111 244444444432 00111111123
Q ss_pred CCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccc---ccccccCCcccc
Q 008856 311 TSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKAL---PKGLHNLSTLQD 387 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~---~~~~~~l~~L~~ 387 (551)
.+|++|+++++ .+..++ ....+++|++|++++|.-....+.....+++|+.|+++++ .++.+ |..+.++++|+.
T Consensus 331 ~~L~~L~l~~n-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDT-PFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESS-CCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCC-Cccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCE
Confidence 67999999994 444332 1257889999999996544445655566779999999985 45544 456889999999
Q ss_pred eeccc-cccc-cccC--CcCCCcceeEecCCchhhhhhhhhccccccC-CCccEEEEeccCCCCcccccccccccccccc
Q 008856 388 LTIGG-ALLS-LEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRF-SSLRHLTIDGCDDDTMMVSFPLEDKRLGTVL 462 (551)
Q Consensus 388 L~l~~-~l~~-l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
|++++ .+.. ++.. ..+++|++|++++|...... +..+ ++|++|++++|. +..+|...
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~l~~~L~~L~L~~N~----l~~ip~~~------- 469 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-------FRCLPPKVKVLDLHNNR----IMSIPKDV------- 469 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-------GSSCCTTCSEEECCSSC----CCCCCTTT-------
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-------hhhhcCcCCEEECCCCc----CcccChhh-------
Confidence 99998 6665 6653 45789999999999843322 2344 699999999994 77888755
Q ss_pred cccccccccccccCCChhhhhhh-ccCCCCcCEEEEcCCC
Q 008856 463 RLPTTLTSLRIEDFPNLERLSSS-IIDLRNLTELVLRGCP 501 (551)
Q Consensus 463 ~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 501 (551)
..+++|++|++++ +.++.+|.. +..+++|++|++++++
T Consensus 470 ~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 470 THLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 2578999999999 789999866 8889999999999965
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.2e-24 Score=221.84 Aligned_cols=369 Identities=25% Similarity=0.273 Sum_probs=227.8
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhc---------cCCCccEEecc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQ---------LSCRLEYLILS 129 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~---------~~~~L~~L~L~ 129 (551)
..+|++|++++ +.+..+ |.. ++.+++|++|++++|.-...+|.. ++.+.. ...++++|+++
T Consensus 10 ~~~L~~L~l~~-n~l~~i---P~~-i~~L~~L~~L~l~~n~~~~~~p~~-----~~~l~~L~~l~l~~c~~~~l~~L~l~ 79 (454)
T 1jl5_A 10 NTFLQEPLRHS-SNLTEM---PVE-AENVKSKTEYYNAWSEWERNAPPG-----NGEQREMAVSRLRDCLDRQAHELELN 79 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTT-----SCCCHHHHHHHHHHHHHHTCSEEECT
T ss_pred cccchhhhccc-CchhhC---Chh-HhcccchhhhhccCCcccccCCcc-----cccchhcchhhhhhhhccCCCEEEec
Confidence 35666666666 345555 443 466666666666664322233332 222200 01356888888
Q ss_pred cCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcce
Q 008856 130 YCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTY 209 (551)
Q Consensus 130 ~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 209 (551)
+| .+..+|.. .++|++|++++ +.++.++. .+++|++|++++|. +..++.. .++|++|++++| .++.
T Consensus 80 ~~-~l~~lp~~---~~~L~~L~l~~-n~l~~lp~--~~~~L~~L~l~~n~-l~~l~~~-----~~~L~~L~L~~n-~l~~ 145 (454)
T 1jl5_A 80 NL-GLSSLPEL---PPHLESLVASC-NSLTELPE--LPQSLKSLLVDNNN-LKALSDL-----PPLLEYLGVSNN-QLEK 145 (454)
T ss_dssp TS-CCSCCCSC---CTTCSEEECCS-SCCSSCCC--CCTTCCEEECCSSC-CSCCCSC-----CTTCCEEECCSS-CCSS
T ss_pred CC-ccccCCCC---cCCCCEEEccC-CcCCcccc--ccCCCcEEECCCCc-cCcccCC-----CCCCCEEECcCC-CCCC
Confidence 85 45666642 46788888887 45666664 34788888888854 4444332 157888888885 4555
Q ss_pred eccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccC-CCchhhhhhccccCCCCC
Q 008856 210 IAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSK-NELPATLESLEVGNLPPS 288 (551)
Q Consensus 210 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~l~~l~~~~~~~~ 288 (551)
++....+++|++|+++++ .++.+ |.... +|++|+++++ .++. ++. ..++ +
T Consensus 146 lp~~~~l~~L~~L~l~~N-~l~~l--p~~~~-----------~L~~L~L~~n-~l~~-l~~~~~l~-------------~ 196 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNN-SLKKL--PDLPP-----------SLEFIAAGNN-QLEE-LPELQNLP-------------F 196 (454)
T ss_dssp CCCCTTCTTCCEEECCSS-CCSCC--CCCCT-----------TCCEEECCSS-CCSS-CCCCTTCT-------------T
T ss_pred CcccCCCCCCCEEECCCC-cCccc--CCCcc-----------cccEEECcCC-cCCc-CccccCCC-------------C
Confidence 665566788999999885 56655 55443 4999999884 4554 321 2222 5
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
|++|++++|.... ++. ..++|++|++++ +.+..+| .+..+++|++|++++| .++.++.. +++|+.|++++
T Consensus 197 L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~-n~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~ 266 (454)
T 1jl5_A 197 LTAIYADNNSLKK-LPD---LPLSLESIVAGN-NILEELP-ELQNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRD 266 (454)
T ss_dssp CCEEECCSSCCSS-CCC---CCTTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCS
T ss_pred CCEEECCCCcCCc-CCC---CcCcccEEECcC-CcCCccc-ccCCCCCCCEEECCCC-cCCccccc---ccccCEEECCC
Confidence 9999999986432 322 236899999999 4677887 4888999999999994 66666653 35999999998
Q ss_pred CccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccC-CCccEEEEeccCCCC
Q 008856 369 CKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRF-SSLRHLTIDGCDDDT 446 (551)
Q Consensus 369 c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~ 446 (551)
| .++.+|.. .++|+.|++++ .+..++. .+++|++|++++|.... +..+ ++|++|++++|.
T Consensus 267 N-~l~~l~~~---~~~L~~L~ls~N~l~~l~~--~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~Ls~N~--- 328 (454)
T 1jl5_A 267 N-YLTDLPEL---PQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRS---------LCDLPPSLEELNVSNNK--- 328 (454)
T ss_dssp S-CCSCCCCC---CTTCCEEECCSSCCSEESC--CCTTCCEEECCSSCCSE---------ECCCCTTCCEEECCSSC---
T ss_pred C-cccccCcc---cCcCCEEECcCCccCcccC--cCCcCCEEECcCCcCCc---------ccCCcCcCCEEECCCCc---
Confidence 5 46667654 37899999998 7766654 34799999999997332 2334 599999999984
Q ss_pred cccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCcccc---CCCC-C-----------
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYF---PEKG-L----------- 511 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l---~~~~-~----------- 511 (551)
+..+|. .+++|++|++++ +.++.+|. .+++|++|++++| .++.+ |... -
T Consensus 329 -l~~lp~----------~~~~L~~L~L~~-N~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 329 -LIELPA----------LPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVP 392 (454)
T ss_dssp -CSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC------
T ss_pred -cccccc----------cCCcCCEEECCC-Cccccccc---hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccc
Confidence 677776 358999999999 68888886 5799999999995 56553 3311 1
Q ss_pred --ccccceEeecCCc
Q 008856 512 --PSSLLELWISGCP 524 (551)
Q Consensus 512 --~~~L~~L~i~~c~ 524 (551)
+++|+.|++++++
T Consensus 393 ~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 393 ELPQNLKQLHVETNP 407 (454)
T ss_dssp ---------------
T ss_pred cccCcCCEEECCCCc
Confidence 2678999998875
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-23 Score=210.88 Aligned_cols=311 Identities=17% Similarity=0.230 Sum_probs=229.1
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL- 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~- 137 (551)
++++++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|++++|. +..+
T Consensus 44 l~~l~~l~l~~-~~l~~l---~~~~~~~l~~L~~L~L~~n-~i~~~~~~----~~~~l----~~L~~L~L~~n~-l~~~~ 109 (390)
T 3o6n_A 44 LNNQKIVTFKN-STMRKL---PAALLDSFRQVELLNLNDL-QIEEIDTY----AFAYA----HTIQKLYMGFNA-IRYLP 109 (390)
T ss_dssp GCCCSEEEEES-CEESEE---CTHHHHHCCCCSEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSC-CCCCC
T ss_pred cCCceEEEecC-CchhhC---ChhHhcccccCcEEECCCC-cccccChh----hccCC----CCcCEEECCCCC-CCcCC
Confidence 68889999988 567777 7777788899999999986 47777663 35656 889999998864 4444
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
+..+..+++|++|+++++ .++.++. +..+++|++|++++|. +..++...+ ..+++|+.|+++++. ++.++ ...
T Consensus 110 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~ 184 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 184 (390)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCC-GGG
T ss_pred HHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCccc-ccc
Confidence 455788899999999885 6777776 4668899999998865 444443211 334789999998853 44443 345
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
+++|+.++++++ .++.+.. .++|++|++++ +.+.. ++....+ +|++|+++
T Consensus 185 l~~L~~L~l~~n-~l~~~~~--------------~~~L~~L~l~~-n~l~~-~~~~~~~-------------~L~~L~l~ 234 (390)
T 3o6n_A 185 IPSLFHANVSYN-LLSTLAI--------------PIAVEELDASH-NSINV-VRGPVNV-------------ELTILKLQ 234 (390)
T ss_dssp CTTCSEEECCSS-CCSEEEC--------------CSSCSEEECCS-SCCCE-EECCCCS-------------SCCEEECC
T ss_pred ccccceeecccc-cccccCC--------------CCcceEEECCC-Ceeee-ccccccc-------------cccEEECC
Confidence 678899988874 4544411 23589999988 45555 4443333 59999999
Q ss_pred cCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc
Q 008856 296 YCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA 374 (551)
Q Consensus 296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 374 (551)
+|..... ..+..+++|++|++++ +.+..+ |..+..+++|++|++++ +.++.++.....+++|+.|++++| .++.
T Consensus 235 ~n~l~~~--~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 235 HNNLTDT--AWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCC
T ss_pred CCCCccc--HHHcCCCCccEEECCC-CcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-ccee
Confidence 9865442 4678899999999999 556655 77888899999999999 467777766666779999999995 5778
Q ss_pred cccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhh
Q 008856 375 LPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEW 424 (551)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 424 (551)
+|..+..+++|+.|++++ .+..++ ...+++|++|++++|+.-.+....+
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred cCccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCCCccchhHHHH
Confidence 888888899999999988 777665 4457889999999988555444333
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.2e-23 Score=207.56 Aligned_cols=145 Identities=14% Similarity=0.282 Sum_probs=78.6
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
+++|++|++++ +.+..+ + .+..+++|++|++++| .++.+++ +..+ ++|++|++++| .+..++
T Consensus 43 l~~L~~L~l~~-~~i~~~---~--~~~~~~~L~~L~l~~n-~i~~~~~------~~~l----~~L~~L~L~~n-~i~~~~ 104 (347)
T 4fmz_A 43 LESITKLVVAG-EKVASI---Q--GIEYLTNLEYLNLNGN-QITDISP------LSNL----VKLTNLYIGTN-KITDIS 104 (347)
T ss_dssp HTTCSEEECCS-SCCCCC---T--TGGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSS-CCCCCG
T ss_pred cccccEEEEeC-Cccccc---h--hhhhcCCccEEEccCC-ccccchh------hhcC----CcCCEEEccCC-cccCch
Confidence 56666666666 344433 2 2456666666666664 3555433 3333 66666666664 334443
Q ss_pred cccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCC
Q 008856 139 QSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSS 218 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 218 (551)
.+..+++|++|+++++ .++.++.+..+++|++|++++|.....++.. ..+++|++|++++|. +..++....+++
T Consensus 105 -~~~~l~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~l~~L~~L~l~~~~-~~~~~~~~~l~~ 178 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLSDLSPL---SNMTGLNYLTVTESK-VKDVTPIANLTD 178 (347)
T ss_dssp -GGTTCTTCSEEECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGGG---TTCTTCCEEECCSSC-CCCCGGGGGCTT
T ss_pred -HHcCCCcCCEEECcCC-cccCchhhccCCceeEEECCCCCCcccccch---hhCCCCcEEEecCCC-cCCchhhccCCC
Confidence 4566666666666663 4555555555666666666666555444432 333556666666542 333333334455
Q ss_pred ccEEEEecC
Q 008856 219 LKMLTIWYC 227 (551)
Q Consensus 219 L~~L~l~~~ 227 (551)
|+.|+++++
T Consensus 179 L~~L~l~~n 187 (347)
T 4fmz_A 179 LYSLSLNYN 187 (347)
T ss_dssp CSEEECTTS
T ss_pred CCEEEccCC
Confidence 555555553
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.1e-23 Score=214.75 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=40.2
Q ss_pred CCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEE
Q 008856 121 CRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILS 200 (551)
Q Consensus 121 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 200 (551)
++|++|++++| .+..++ +..+++|++|+++++ .++.++ ++.+++|++|++++|..+..++. ..+++|+.|+
T Consensus 106 ~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~----~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLDV----TPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCCC----TTCTTCCEEE
T ss_pred CcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccccccc----ccCCcCCEEE
Confidence 44555555443 223332 444445555555442 333332 34444555555554433333311 1224455555
Q ss_pred EecCCCcceeccccCCCCccEEEEec
Q 008856 201 IHGCRSLTYIAAVQLPSSLKMLTIWY 226 (551)
Q Consensus 201 l~~~~~~~~~~~~~~~~~L~~L~l~~ 226 (551)
+++| .++.++ ...+++|+.|++++
T Consensus 177 ls~n-~l~~l~-l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 177 CSFN-KITELD-VSQNKLLNRLNCDT 200 (457)
T ss_dssp CCSS-CCCCCC-CTTCTTCCEEECCS
T ss_pred CCCC-ccceec-cccCCCCCEEECcC
Confidence 5443 233333 23334555555554
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.2e-23 Score=205.55 Aligned_cols=124 Identities=16% Similarity=0.243 Sum_probs=71.1
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCC
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEV 164 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 164 (551)
..+++|++|+++++ .+..++. +..+ ++|++|++++| .+..++. +..+++|++|++++| .++.++.+
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~------~~~~----~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG------IEYL----TNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT------GGGC----TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchh------hhhc----CCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 46677777777774 3655532 4444 77777777775 4455554 667777777777774 55556556
Q ss_pred CCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEec
Q 008856 165 ALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWY 226 (551)
Q Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 226 (551)
..+++|++|++++|. +..++.. ..+++|+.|++++|.....++....+++|+.|++++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGGG---TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS
T ss_pred cCCCcCCEEECcCCc-ccCchhh---ccCCceeEEECCCCCCcccccchhhCCCCcEEEecC
Confidence 667777777776644 4443332 233555555555554444433333334444444443
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.9e-23 Score=216.05 Aligned_cols=366 Identities=15% Similarity=0.161 Sum_probs=197.6
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++.-...+++. .+..+ ++|++|++++|......|.
T Consensus 30 ~~l~~L~Ls~-n~i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSL-NSIAEL---NETSFSRLQDLQFLKVEQQTPGLVIRNN----TFRGL----SSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp TTCCEEECCS-SCCCEE---CTTTTSSCTTCCEEECCCCSTTCEECTT----TTTTC----TTCCEEECTTCTTCEECTT
T ss_pred CccCEEEecC-CccCcC---ChhHhccCccccEEECcCCcccceECcc----ccccc----ccCCEEeCCCCccCccChh
Confidence 6788888888 456655 5566778888888888886422344442 35555 7888888888654334466
Q ss_pred ccCCCCCCceEEEccCCCCcc--cCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 140 SSFSLSSLREIEIFKCSSLVS--FPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 140 ~~~~l~~L~~L~l~~c~~l~~--~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
.+..+++|++|++++| .++. ... +..+++|++|++++|. +..+........+++|++|++++|. ++.+.
T Consensus 98 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~---- 170 (455)
T 3v47_A 98 AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VKSIC---- 170 (455)
T ss_dssp TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BSCCC----
T ss_pred hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-ccccC----
Confidence 7778888888888875 3432 222 5567778888887765 3333221111234666666666643 22221
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
+..+.. +...+++.|+++++ .+.. ++...+..... -.+.. .++|++|+++
T Consensus 171 --------------------~~~l~~------l~~~~L~~L~l~~n-~l~~-~~~~~~~~~~~-~~~~~-~~~L~~L~Ls 220 (455)
T 3v47_A 171 --------------------EEDLLN------FQGKHFTLLRLSSI-TLQD-MNEYWLGWEKC-GNPFK-NTSITTLDLS 220 (455)
T ss_dssp --------------------TTTSGG------GTTCEEEEEECTTC-BCTT-CSTTCTTHHHH-CCTTT-TCEEEEEECT
T ss_pred --------------------hhhhhc------cccccccccccccC-cccc-cchhhcccccc-ccccc-cceeeeEecC
Confidence 111111 11123455555442 2222 11111000000 00000 0148888888
Q ss_pred cCcchhhhHhhhcC---CCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccc
Q 008856 296 YCSKLESIAERLDN---NTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRL 372 (551)
Q Consensus 296 ~~~~~~~~~~~~~~---l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 372 (551)
+|......+..+.. .++|+.|+++++...... .....++.+.. ........++|+.|++++|...
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-FGHTNFKDPDN-----------FTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-TTCCSSCCCCT-----------TTTGGGTTSCCCEEECCSSCCC
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccc-cchhhhccCcc-----------cccccccccCceEEEecCcccc
Confidence 88665555544432 367778877775332211 00111111110 0001111236667777665433
Q ss_pred cccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccc
Q 008856 373 KALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMV 449 (551)
Q Consensus 373 ~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 449 (551)
...|..+.++++|+.|++++ .+..++.. ..+++|++|++++|.. ....+.. +..+++|++|++++|. +.
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~Ls~N~----l~ 360 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRM---FENLDKLEVLDLSYNH----IR 360 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGG---GTTCTTCCEEECCSSC----CC
T ss_pred ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcChhH---hcCcccCCEEECCCCc----cc
Confidence 33455566677777777766 55554432 3456777777777763 2222222 5677788888888773 55
Q ss_pred ccccccccccccccccccccccccccCCChhhhhh-hccCCCCcCEEEEcCCC
Q 008856 450 SFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS-SIIDLRNLTELVLRGCP 501 (551)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~ 501 (551)
.++... +..+++|++|++++ +.++.+|. .+..+++|++|++++|+
T Consensus 361 ~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 361 ALGDQS------FLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccChhh------ccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 553321 23457788888887 67777763 45677888888888754
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.8e-22 Score=214.13 Aligned_cols=311 Identities=17% Similarity=0.229 Sum_probs=233.6
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL- 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~- 137 (551)
+++++.+++++ +.+..+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|+|++|. +..+
T Consensus 50 l~~l~~l~l~~-~~l~~l---p~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~-l~~~~ 115 (597)
T 3oja_B 50 LNNQKIVTFKN-STMRKL---PAALLDSFRQVELLNLNDL-QIEEIDTY----AFAYA----HTIQKLYMGFNA-IRYLP 115 (597)
T ss_dssp GCCCSEEEESS-CEESEE---CTHHHHHCCCCSEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSC-CCCCC
T ss_pred CCCceEEEeeC-CCCCCc---CHHHHccCCCCcEEECCCC-CCCCCChH----HhcCC----CCCCEEECCCCc-CCCCC
Confidence 57889999988 567777 7777888999999999986 47777663 35666 899999999865 4544
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
+..+..+++|++|+++++ .++.+++ ++.+++|++|++++|. +..++...+ ..+++|+.|++++|. ++.++ ...
T Consensus 116 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~ 190 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 190 (597)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCC-GGG
T ss_pred HHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcC-hhh
Confidence 445688999999999985 6777776 4678999999999875 444443222 234889999998853 44443 345
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
+++|+.|+++++ .+..+.+ ..+|+.|++++ +.+.. ++....+ +|+.|+++
T Consensus 191 l~~L~~L~l~~n-~l~~l~~--------------~~~L~~L~ls~-n~l~~-~~~~~~~-------------~L~~L~L~ 240 (597)
T 3oja_B 191 IPSLFHANVSYN-LLSTLAI--------------PIAVEELDASH-NSINV-VRGPVNV-------------ELTILKLQ 240 (597)
T ss_dssp CTTCSEEECCSS-CCSEEEC--------------CTTCSEEECCS-SCCCE-EECSCCS-------------CCCEEECC
T ss_pred hhhhhhhhcccC-ccccccC--------------CchhheeeccC-Ccccc-cccccCC-------------CCCEEECC
Confidence 678999998874 4544411 33599999988 44554 3333322 59999999
Q ss_pred cCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc
Q 008856 296 YCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA 374 (551)
Q Consensus 296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 374 (551)
+|.... +..+..+++|+.|++++ +.+..+ |..+..+++|++|++++ +.+..++.....+++|+.|++++| .++.
T Consensus 241 ~n~l~~--~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~ 315 (597)
T 3oja_B 241 HNNLTD--TAWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLH 315 (597)
T ss_dssp SSCCCC--CGGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCC
T ss_pred CCCCCC--ChhhccCCCCCEEECCC-CccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCc
Confidence 996544 35678899999999999 556655 77888999999999999 467777776667789999999995 5778
Q ss_pred cccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhh
Q 008856 375 LPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEW 424 (551)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 424 (551)
+|..+..+++|+.|++++ .+..++ ...+++|++|++++|+........+
T Consensus 316 i~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred cCcccccCCCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCCCCChhHHHH
Confidence 888889999999999999 777665 4467899999999999655544444
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.1e-22 Score=206.07 Aligned_cols=256 Identities=19% Similarity=0.208 Sum_probs=165.3
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
.+++|++|++++ +.++.+ + .+..+++|++|++++| .++.++ +..+ ++|++|++++| .+..+
T Consensus 40 ~l~~L~~L~Ls~-n~l~~~---~--~l~~l~~L~~L~Ls~n-~l~~~~-------~~~l----~~L~~L~Ls~N-~l~~~ 100 (457)
T 3bz5_A 40 QLATLTSLDCHN-SSITDM---T--GIEKLTGLTKLICTSN-NITTLD-------LSQN----TNLTYLACDSN-KLTNL 100 (457)
T ss_dssp HHTTCCEEECCS-SCCCCC---T--TGGGCTTCSEEECCSS-CCSCCC-------CTTC----TTCSEEECCSS-CCSCC
T ss_pred HcCCCCEEEccC-CCcccC---h--hhcccCCCCEEEccCC-cCCeEc-------cccC----CCCCEEECcCC-CCcee
Confidence 478888888888 466654 4 3678888888888886 476653 3444 88888888885 45555
Q ss_pred ccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPS 217 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 217 (551)
+ +..+++|++|+++++ .++.++ ++.+++|++|++++|. ++.++ . ..+++|+.|++++|..+..++ ...++
T Consensus 101 ~--~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~-l~~l~-l---~~l~~L~~L~l~~n~~~~~~~-~~~l~ 170 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNT-LTEID-V---SHNTQLTELDCHLNKKITKLD-VTPQT 170 (457)
T ss_dssp C--CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTSC-CSCCC-C---TTCTTCCEEECTTCSCCCCCC-CTTCT
T ss_pred e--cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCCc-cceec-c---ccCCcCCEEECCCCCcccccc-cccCC
Confidence 4 778888888888884 566665 6778888888888764 44443 1 234778888888776555552 34456
Q ss_pred CccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccC
Q 008856 218 SLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYC 297 (551)
Q Consensus 218 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~ 297 (551)
+|+.|+++++ .++.+ | +.. +++|+.|++++ +.++. ++...++. |++|++++|
T Consensus 171 ~L~~L~ls~n-~l~~l--~--l~~--------l~~L~~L~l~~-N~l~~-~~l~~l~~-------------L~~L~Ls~N 222 (457)
T 3bz5_A 171 QLTTLDCSFN-KITEL--D--VSQ--------NKLLNRLNCDT-NNITK-LDLNQNIQ-------------LTFLDCSSN 222 (457)
T ss_dssp TCCEEECCSS-CCCCC--C--CTT--------CTTCCEEECCS-SCCSC-CCCTTCTT-------------CSEEECCSS
T ss_pred cCCEEECCCC-cccee--c--ccc--------CCCCCEEECcC-CcCCe-eccccCCC-------------CCEEECcCC
Confidence 7777777774 55554 3 333 45677777776 34444 33333333 777777777
Q ss_pred cchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccccc
Q 008856 298 SKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPK 377 (551)
Q Consensus 298 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 377 (551)
.... ++ +..+++|+.|++++ +.+..++ +..+++|+.|+++++ +|+.|++++|.....+|
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~-N~l~~~~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSV-NPLTELD--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCS-SCCSCCC--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred cccc-cC--ccccCCCCEEEeeC-CcCCCcC--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence 5433 33 56667777777777 4455553 345666666666553 45666666666555554
Q ss_pred ccccCCcccceeccc
Q 008856 378 GLHNLSTLQDLTIGG 392 (551)
Q Consensus 378 ~~~~l~~L~~L~l~~ 392 (551)
+..+++|+.|++++
T Consensus 282 -~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 282 -AEGCRKIKELDVTH 295 (457)
T ss_dssp -CTTCTTCCCCCCTT
T ss_pred -ccccccCCEEECCC
Confidence 35667777777766
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-22 Score=204.84 Aligned_cols=302 Identities=16% Similarity=0.147 Sum_probs=209.0
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+.+++.|++.++... .+|..++..+++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+++.
T Consensus 44 l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~--- 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLND-LQIEEI---DTYAFAYAHTIQKLYMGFN-AIRYLPPH--- 111 (390)
T ss_dssp GCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTT-SCCCEE---CTTTTTTCTTCCEEECCSS-CCCCCCTT---
T ss_pred cCCceEEEecCCchh----hCChhHhcccccCcEEECCC-Cccccc---ChhhccCCCCcCEEECCCC-CCCcCCHH---
Confidence 566777777776533 34554445578888888888 456666 6556777888888888885 47766653
Q ss_pred hhhhhhhccCCCccEEecccCccccccccc-cCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGLVKLPQS-SFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEA 187 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~ 187 (551)
.+..+ ++|++|++++| .+..+|.. +..+++|++|+++++ .++.+++ +..+++|++|++++|. +..++.
T Consensus 112 -~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~- 182 (390)
T 3o6n_A 112 -VFQNV----PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVDL- 182 (390)
T ss_dssp -TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG-
T ss_pred -HhcCC----CCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc-CCcccc-
Confidence 25555 78888888875 45666655 477888888888874 4555544 5667888888888754 444432
Q ss_pred hhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCccc
Q 008856 188 WMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI 267 (551)
Q Consensus 188 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 267 (551)
..+++|+.|+++++ .++.+ ..+++|+.|+++++ .+..+ +... .++|+.|+++++ .++..
T Consensus 183 ---~~l~~L~~L~l~~n-~l~~~---~~~~~L~~L~l~~n-~l~~~--~~~~----------~~~L~~L~l~~n-~l~~~ 241 (390)
T 3o6n_A 183 ---SLIPSLFHANVSYN-LLSTL---AIPIAVEELDASHN-SINVV--RGPV----------NVELTILKLQHN-NLTDT 241 (390)
T ss_dssp ---GGCTTCSEEECCSS-CCSEE---ECCSSCSEEECCSS-CCCEE--ECCC----------CSSCCEEECCSS-CCCCC
T ss_pred ---ccccccceeecccc-ccccc---CCCCcceEEECCCC-eeeec--cccc----------cccccEEECCCC-CCccc
Confidence 23477888888874 33333 34567888888874 55555 4432 236888888884 44441
Q ss_pred ccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCC
Q 008856 268 FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGN 347 (551)
Q Consensus 268 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 347 (551)
-....++ +|++|++++|......+..+..+++|+.|++++ +.+..++.....+++|++|++++| .
T Consensus 242 ~~l~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 242 AWLLNYP-------------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-H 306 (390)
T ss_dssp GGGGGCT-------------TCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-C
T ss_pred HHHcCCC-------------CccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-c
Confidence 1111222 599999999876666677888899999999998 667777777778899999999995 5
Q ss_pred CccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc
Q 008856 348 LVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 348 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~ 392 (551)
+..++.....+++|+.|++++|. ++.++ +..+++|+.|++++
T Consensus 307 l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 307 LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCS
T ss_pred ceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCC
Confidence 66666544445689999999854 66664 67788999999988
No 38
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2.5e-23 Score=222.64 Aligned_cols=300 Identities=12% Similarity=0.104 Sum_probs=156.1
Q ss_pred ccccceeeeccccCcccceeccCCc-----------CCCCCCccEEEecCCCCchhhcccCcchhcc-cCC-ccEEeecC
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPL-----------KPRIPKLEELKINNIQNETCIWKSHNELLQD-ICS-LKRLTITS 97 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-l~~-L~~L~l~~ 97 (551)
+++|+.|++.+|+...+....|... ...+++|++|++++| .+++. ....+.. +++ |++|++++
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~---~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDL---DLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHH---HHHHHHHHHGGGCCEEEEES
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHH---HHHHHHHhccccCcEEECcC
Confidence 5666666666665543222222111 125788888888886 44433 2222333 455 88888888
Q ss_pred CccccccchhhhhhhhhhhhccCCCccEEecccCccccc----cccccCCCCCCceEEEccCCCCc-----ccCC-CCCC
Q 008856 98 CPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK----LPQSSFSLSSLREIEIFKCSSLV-----SFPE-VALP 167 (551)
Q Consensus 98 ~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~----~~~~~~~l~~L~~L~l~~c~~l~-----~~~~-~~~~ 167 (551)
|..+.. .++..+...+++|++|++++|..... ++.....+++|++|+++++ .++ .++. +..+
T Consensus 148 ~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 148 CSGFTT-------DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNC 219 (592)
T ss_dssp CEEEEH-------HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHC
T ss_pred CCCcCH-------HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhC
Confidence 764332 22333333448888888888743221 2233456788888888774 333 2222 3457
Q ss_pred CCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcce----eccccCCCCccEEEEecCCCcccccccccccccC
Q 008856 168 SKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTY----IAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSS 243 (551)
Q Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 243 (551)
++|++|++++|. +..++..+ ...++|+.|+++++..... ......+++|+.+.++++ ....+ +..+..
T Consensus 220 ~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l--~~~~~~-- 291 (592)
T 3ogk_B 220 RSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEM--PILFPF-- 291 (592)
T ss_dssp TTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTG--GGGGGG--
T ss_pred CCCcEEeccCcc-HHHHHHHH--hhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHH--HHHHhh--
Confidence 888888888865 44444332 2347788888875332211 111144567777777653 22222 443333
Q ss_pred CCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEec---
Q 008856 244 SSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYN--- 320 (551)
Q Consensus 244 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--- 320 (551)
+++|++|++++|. ++. .. ++..+.+ .++|++|+++++.....+......+++|++|++++
T Consensus 292 ------~~~L~~L~Ls~~~-l~~-~~---~~~~~~~------~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 292 ------AAQIRKLDLLYAL-LET-ED---HCTLIQK------CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354 (592)
T ss_dssp ------GGGCCEEEETTCC-CCH-HH---HHHHHTT------CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCC
T ss_pred ------cCCCcEEecCCCc-CCH-HH---HHHHHHh------CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcc
Confidence 4567777777765 332 11 1110111 11477777764322233334445667777777773
Q ss_pred -------CCCcccc--cccccCCCCcceEEecCCCCCccC--CCCCCCCCCccEEEEcc
Q 008856 321 -------CENLKIL--PSGLHKLHQLREISIGSCGNLVSF--PGGGLPCAKLTALEIYD 368 (551)
Q Consensus 321 -------~~~l~~~--~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~ 368 (551)
|+.+... +.....+++|++|+++. +.++.- ......+++|+.|++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp SSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred ccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEee
Confidence 5555432 22233466777777733 333321 00111134666666663
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.8e-21 Score=199.99 Aligned_cols=293 Identities=20% Similarity=0.238 Sum_probs=136.5
Q ss_pred cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhh
Q 008856 32 DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKD 111 (551)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 111 (551)
.+++.|++.++.... ++...+..+++|++|++++ +.++.+ ....+..+++|++|+++++ .++.++..
T Consensus 32 ~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~---- 98 (477)
T 2id5_A 32 TETRLLDLGKNRIKT----LNQDEFASFPHLEELELNE-NIVSAV---EPGAFNNLFNLRTLGLRSN-RLKLIPLG---- 98 (477)
T ss_dssp TTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTT-SCCCEE---CTTTTTTCTTCCEEECCSS-CCCSCCTT----
T ss_pred CCCcEEECCCCccce----ECHhHccCCCCCCEEECCC-CccCEe---ChhhhhCCccCCEEECCCC-cCCccCcc----
Confidence 345555555544322 2223334455666666655 344444 3444555566666666553 35555442
Q ss_pred hhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhh
Q 008856 112 QQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWM 189 (551)
Q Consensus 112 ~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (551)
.+..+ ++|++|++++|......+..+..+++|++|+++++ .+..+.+ +..+++|++|++++|. +..++...+
T Consensus 99 ~~~~l----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l 172 (477)
T 2id5_A 99 VFTGL----SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEAL 172 (477)
T ss_dssp SSTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHH
T ss_pred cccCC----CCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCc-CcccChhHh
Confidence 13333 55666666554332233444555556666666553 3333332 3445555555555543 333332211
Q ss_pred hccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCccccc
Q 008856 190 CDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFS 269 (551)
Q Consensus 190 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 269 (551)
..+++|+.|+++++. +..++.. .+.. +++|++|++++|+.+.. ++
T Consensus 173 -~~l~~L~~L~l~~n~-i~~~~~~------------------------~~~~--------l~~L~~L~l~~~~~~~~-~~ 217 (477)
T 2id5_A 173 -SHLHGLIVLRLRHLN-INAIRDY------------------------SFKR--------LYRLKVLEISHWPYLDT-MT 217 (477)
T ss_dssp -TTCTTCCEEEEESCC-CCEECTT------------------------CSCS--------CTTCCEEEEECCTTCCE-EC
T ss_pred -cccCCCcEEeCCCCc-CcEeChh------------------------hccc--------CcccceeeCCCCccccc-cC
Confidence 122455555555432 2222221 2222 33455555555444433 22
Q ss_pred CCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCC
Q 008856 270 KNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNL 348 (551)
Q Consensus 270 ~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l 348 (551)
...+.. .+|++|++++|.........+..+++|+.|++++ +.+..+ +..+..+++|++|++++| .+
T Consensus 218 ~~~~~~-----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l 284 (477)
T 2id5_A 218 PNCLYG-----------LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QL 284 (477)
T ss_dssp TTTTTT-----------CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSS-CC
T ss_pred cccccC-----------ccccEEECcCCcccccCHHHhcCccccCeeECCC-CcCCccChhhccccccCCEEECCCC-cc
Confidence 211111 1355555555543322233455566666666665 334444 334455566666666663 33
Q ss_pred ccC-CCCCCCCCCccEEEEccCcccccccc-ccccCCcccceeccc
Q 008856 349 VSF-PGGGLPCAKLTALEIYDCKRLKALPK-GLHNLSTLQDLTIGG 392 (551)
Q Consensus 349 ~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~l~~L~~L~l~~ 392 (551)
..+ +.....+++|+.|++++| .++.++. .+..+++|+.|++++
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred ceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence 332 333334456666666653 3444432 345566666666655
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.9e-21 Score=205.31 Aligned_cols=302 Identities=16% Similarity=0.147 Sum_probs=198.0
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+.+++.+++.++... .+|..++..+++|++|++++ +.++.+ +...+..+++|++|++++| .++.+++.
T Consensus 50 l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~-n~l~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~--- 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLND-LQIEEI---DTYAFAYAHTIQKLYMGFN-AIRYLPPH--- 117 (597)
T ss_dssp GCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTT-SCCCEE---CTTTTTTCTTCCEEECCSS-CCCCCCTT---
T ss_pred CCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCC-CCCCCC---ChHHhcCCCCCCEEECCCC-cCCCCCHH---
Confidence 455666666665433 34554445577888888887 456655 5556677788888888875 37666653
Q ss_pred hhhhhhhccCCCccEEecccCccccccccc-cCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGLVKLPQS-SFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEA 187 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~ 187 (551)
.+..+ ++|++|++++| .+..+|.. +..+++|++|+++++ .++.+++ +..+++|++|++++|. +..++.
T Consensus 118 -~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~- 188 (597)
T 3oja_B 118 -VFQNV----PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVDL- 188 (597)
T ss_dssp -TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG-
T ss_pred -HHcCC----CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC-CCCcCh-
Confidence 24555 78888888775 44566554 467788888888774 4555543 5567788888887754 444432
Q ss_pred hhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCccc
Q 008856 188 WMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI 267 (551)
Q Consensus 188 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 267 (551)
..+++|+.|+++++ .++.+ ..+++|+.|+++++ .+..+ +..+. ++|+.|+++++ .++..
T Consensus 189 ---~~l~~L~~L~l~~n-~l~~l---~~~~~L~~L~ls~n-~l~~~--~~~~~----------~~L~~L~L~~n-~l~~~ 247 (597)
T 3oja_B 189 ---SLIPSLFHANVSYN-LLSTL---AIPIAVEELDASHN-SINVV--RGPVN----------VELTILKLQHN-NLTDT 247 (597)
T ss_dssp ---GGCTTCSEEECCSS-CCSEE---ECCTTCSEEECCSS-CCCEE--ECSCC----------SCCCEEECCSS-CCCCC
T ss_pred ---hhhhhhhhhhcccC-ccccc---cCCchhheeeccCC-ccccc--ccccC----------CCCCEEECCCC-CCCCC
Confidence 22367888887774 33333 34567888888774 45544 33322 36888888874 34431
Q ss_pred ccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCC
Q 008856 268 FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGN 347 (551)
Q Consensus 268 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 347 (551)
.....++ +|++|++++|......+..+..+++|+.|++++ +.+..+|.....+++|++|++++| .
T Consensus 248 ~~l~~l~-------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 248 AWLLNYP-------------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp GGGGGCT-------------TCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-C
T ss_pred hhhccCC-------------CCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-C
Confidence 1111222 488888888876666677788888888888888 567777776777888888888885 5
Q ss_pred CccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc
Q 008856 348 LVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 348 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~ 392 (551)
+..+|.....+++|+.|++++|. ++.++ +..+++|+.|++++
T Consensus 313 l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 313 LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCS
T ss_pred CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeC
Confidence 55666544445688888888854 55553 66778888888877
No 41
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=3.1e-22 Score=214.24 Aligned_cols=437 Identities=16% Similarity=0.142 Sum_probs=231.9
Q ss_pred ceEEeCCCCCcc---ccccccccceeeeccccCcccceeccC-----------CcCCCCCCccEEEecCCCCchhhcccC
Q 008856 15 CKMEIGGCKKVV---WRSATDHLGSQNSVVCRDASNQVFLAG-----------PLKPRIPKLEELKINNIQNETCIWKSH 80 (551)
Q Consensus 15 ~~L~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-----------~~~~~~~~L~~L~l~~~~~l~~~~~~~ 80 (551)
+.+++.+|.... +...+++|+.|++.+|....+....+. .+...+++|++|++++|. +.+. .
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~---~ 121 (594)
T 2p1m_B 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDD---C 121 (594)
T ss_dssp CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHH---H
T ss_pred eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHH---H
Confidence 345555554433 223366677777777654432111111 112347888999998864 4433 2
Q ss_pred cchhc-ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc----ccccccCCCCCCceEEEccC
Q 008856 81 NELLQ-DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV----KLPQSSFSLSSLREIEIFKC 155 (551)
Q Consensus 81 ~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~----~~~~~~~~l~~L~~L~l~~c 155 (551)
...+. .+++|++|++.+|..++.. ++..+...+++|++|++++|..-. .++.....+++|++|++++|
T Consensus 122 ~~~l~~~~~~L~~L~L~~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 122 LELIAKSFKNFKVLVLSSCEGFSTD-------GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCEEEEHH-------HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred HHHHHHhCCCCcEEeCCCcCCCCHH-------HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 22333 6888999999888655541 122223334889999998875211 13333446778888888887
Q ss_pred C-CCc--ccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCC------cceec-cccCCCCccEE-E
Q 008856 156 S-SLV--SFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRS------LTYIA-AVQLPSSLKML-T 223 (551)
Q Consensus 156 ~-~l~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~-~~~~~~~L~~L-~ 223 (551)
. .+. .+.. ...+++|++|++++|..+..++... ...++|+.|++.++.. +..++ ....+++|+.+ .
T Consensus 195 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~ 272 (594)
T 2p1m_B 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272 (594)
T ss_dssp CSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccC
Confidence 5 111 1111 2336888888888886665544332 2337788888766532 01111 11334566666 2
Q ss_pred EecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhh
Q 008856 224 IWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESI 303 (551)
Q Consensus 224 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~ 303 (551)
+.+ ...-.++..+.. +++|++|++++|. ++. .. +...+.++ ++|++|++++|.....+
T Consensus 273 ~~~---~~~~~l~~~~~~--------~~~L~~L~L~~~~-l~~-~~---l~~~~~~~------~~L~~L~l~~~~~~~~l 330 (594)
T 2p1m_B 273 FWD---AVPAYLPAVYSV--------CSRLTTLNLSYAT-VQS-YD---LVKLLCQC------PKLQRLWVLDYIEDAGL 330 (594)
T ss_dssp CBT---CCGGGGGGGHHH--------HTTCCEEECTTCC-CCH-HH---HHHHHTTC------TTCCEEEEEGGGHHHHH
T ss_pred Ccc---cchhhHHHHHHh--------hCCCCEEEccCCC-CCH-HH---HHHHHhcC------CCcCEEeCcCccCHHHH
Confidence 222 111111222222 5578888888866 432 11 11111111 25888888887322233
Q ss_pred HhhhcCCCCCcEEEEec--------CCCcccc-cccc-cCCCCcceEEecCCCCCccCC--CCCCCCCCccEEEEc----
Q 008856 304 AERLDNNTSLETISIYN--------CENLKIL-PSGL-HKLHQLREISIGSCGNLVSFP--GGGLPCAKLTALEIY---- 367 (551)
Q Consensus 304 ~~~~~~l~~L~~L~l~~--------~~~l~~~-~~~~-~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~---- 367 (551)
......+++|++|++++ |+.+... ...+ ..+++|++|.+.+ +.++... .....+++|+.|+++
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 33444578888888844 3334322 1112 2478888886544 4443211 111124588888888
Q ss_pred -cCccccccc------cccccCCcccceecccccc--ccccCC-cCCCcceeEecCCchhhhhhhhhccccccCCCccEE
Q 008856 368 -DCKRLKALP------KGLHNLSTLQDLTIGGALL--SLEEDG-LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHL 437 (551)
Q Consensus 368 -~c~~l~~~~------~~~~~l~~L~~L~l~~~l~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 437 (551)
+|+.++..| ..+.++++|+.|++++.+. .++..+ .+++|++|++++|.......... ...+++|++|
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l---~~~~~~L~~L 486 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKL 486 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH---HHHCTTCCEE
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH---HhcCCCcCEE
Confidence 566666433 1245677888888866111 111111 25778888888877433322221 3567888888
Q ss_pred EEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhc-cCCCCcCEEEEcC
Q 008856 438 TIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSI-IDLRNLTELVLRG 499 (551)
Q Consensus 438 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~ 499 (551)
++++|. +...... .....+++|+.|++++|+.-..-...+ ..+|+|+...+..
T Consensus 487 ~L~~n~----~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 487 EIRDCP----FGDKALL-----ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp EEESCS----CCHHHHH-----HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred ECcCCC----CcHHHHH-----HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 888873 2111100 011234678888888765422211222 4567766655554
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=2.7e-20 Score=193.64 Aligned_cols=297 Identities=21% Similarity=0.281 Sum_probs=183.3
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
+++++|++++ +.++.+ +...+..+++|++|+++++ .++.+.+. ++..+ ++|++|+|++| .+..++.
T Consensus 32 ~~l~~L~L~~-n~l~~~---~~~~~~~l~~L~~L~L~~n-~i~~~~~~----~~~~l----~~L~~L~L~~n-~l~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTL---NQDEFASFPHLEELELNEN-IVSAVEPG----AFNNL----FNLRTLGLRSN-RLKLIPL 97 (477)
T ss_dssp TTCSEEECCS-SCCCEE---CTTTTTTCTTCCEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSS-CCCSCCT
T ss_pred CCCcEEECCC-CccceE---CHhHccCCCCCCEEECCCC-ccCEeChh----hhhCC----ccCCEEECCCC-cCCccCc
Confidence 4556666665 345544 4444555666666666654 35444332 24444 56666666553 3344443
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc--c
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--Q 214 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~ 214 (551)
.+..+++|++|+++++ .+..+.+ +..+++|++|++++|. ++.+... .
T Consensus 98 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~---------------------------l~~~~~~~~~ 149 (477)
T 2id5_A 98 GVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDND---------------------------LVYISHRAFS 149 (477)
T ss_dssp TSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTT---------------------------CCEECTTSST
T ss_pred ccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCc---------------------------cceeChhhcc
Confidence 2445555555555553 3333322 3344555555555432 2222221 2
Q ss_pred CCCCccEEEEecCCCcccccccc-cccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEE
Q 008856 215 LPSSLKMLTIWYCDNIRTLTVEE-GIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLR 293 (551)
Q Consensus 215 ~~~~L~~L~l~~~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 293 (551)
.+++|+.|+++++ .++.+ +. .+.. +++|+.|+++++ .+.. ++...+.. + ++|++|+
T Consensus 150 ~l~~L~~L~l~~n-~l~~~--~~~~l~~--------l~~L~~L~l~~n-~i~~-~~~~~~~~----l------~~L~~L~ 206 (477)
T 2id5_A 150 GLNSLEQLTLEKC-NLTSI--PTEALSH--------LHGLIVLRLRHL-NINA-IRDYSFKR----L------YRLKVLE 206 (477)
T ss_dssp TCTTCCEEEEESC-CCSSC--CHHHHTT--------CTTCCEEEEESC-CCCE-ECTTCSCS----C------TTCCEEE
T ss_pred CCCCCCEEECCCC-cCccc--ChhHhcc--------cCCCcEEeCCCC-cCcE-eChhhccc----C------cccceee
Confidence 2356666666664 34433 32 2333 556888888873 4444 22222111 1 2599999
Q ss_pred eccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEccCcc
Q 008856 294 VRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKR 371 (551)
Q Consensus 294 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~ 371 (551)
+++|.....++.......+|++|++++ +.+..+| ..+..+++|++|++++| .+..++. ....+++|+.|+++++.
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~- 283 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITH-CNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ- 283 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEES-SCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-
T ss_pred CCCCccccccCcccccCccccEEECcC-CcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCc-
Confidence 999987777766666667999999999 5677775 46788999999999995 4555554 44556799999999965
Q ss_pred cccc-ccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhh
Q 008856 372 LKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEW 424 (551)
Q Consensus 372 l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~ 424 (551)
++.+ +..+.++++|+.|++++ .+..++.. ..+++|++|++++|+...+....|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 5444 67789999999999999 88877764 457899999999998554443334
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=8e-23 Score=218.72 Aligned_cols=399 Identities=17% Similarity=0.146 Sum_probs=229.6
Q ss_pred hccCCCCcceEEeCCCCCcc-------------------ccccccccceeeeccccCcccceeccCCcCCCCCC-ccEEE
Q 008856 7 SITSLPALCKMEIGGCKKVV-------------------WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPK-LEELK 66 (551)
Q Consensus 7 ~~~~~~~L~~L~l~~~~~~~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~ 66 (551)
.+.++++|++|++++|.... +...+++|+.|++.+|....... ..+...+++ |++|+
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~---~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL---DRLAKARADDLETLK 144 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH---HHHHHHHGGGCCEEE
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHH---HHHHHhccccCcEEE
Confidence 46678999999998876532 11147889999999885433211 111112445 99999
Q ss_pred ecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccc----cccccccC
Q 008856 67 INNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGL----VKLPQSSF 142 (551)
Q Consensus 67 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l----~~~~~~~~ 142 (551)
+++|..+... +.......+++|++|++++|. +...... ++..+...+++|++|+++++..- ..++..+.
T Consensus 145 L~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~-~~~~~~~----~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 145 LDKCSGFTTD--GLLSIVTHCRKIKTLLMEESS-FSEKDGK----WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp EESCEEEEHH--HHHHHHHHCTTCSEEECTTCE-EECCCSH----HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred CcCCCCcCHH--HHHHHHhhCCCCCEEECcccc-ccCcchh----HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 9998754432 112233578999999999974 5443321 23333334499999999886432 23444566
Q ss_pred CCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhh-ccCCCccEEEEecCCCcceeccc-cCCCCc
Q 008856 143 SLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMC-DTNSSLEILSIHGCRSLTYIAAV-QLPSSL 219 (551)
Q Consensus 143 ~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L 219 (551)
.+++|++|++++| .+..++. +..+++|++|+++++.........+.. ...++|+.|+++++. ...++.. ..+++|
T Consensus 218 ~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGC
T ss_pred hCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCC
Confidence 7899999999986 4444544 456889999999864332211111111 223789999888742 2233322 456789
Q ss_pred cEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEecc---
Q 008856 220 KMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRY--- 296 (551)
Q Consensus 220 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~--- 296 (551)
++|++++|. ++...+...+.. +++|++|+++++ +. ...++.....+ ++|++|++++
T Consensus 296 ~~L~Ls~~~-l~~~~~~~~~~~--------~~~L~~L~L~~~--~~----~~~l~~~~~~~------~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 296 RKLDLLYAL-LETEDHCTLIQK--------CPNLEVLETRNV--IG----DRGLEVLAQYC------KQLKRLRIERGAD 354 (592)
T ss_dssp CEEEETTCC-CCHHHHHHHHTT--------CTTCCEEEEEGG--GH----HHHHHHHHHHC------TTCCEEEEECCCC
T ss_pred cEEecCCCc-CCHHHHHHHHHh--------CcCCCEEeccCc--cC----HHHHHHHHHhC------CCCCEEEeecCcc
Confidence 999999876 543322222233 667999999842 21 11222211221 2599999994
Q ss_pred -------Ccchh--hhHhhhcCCCCCcEEEEecCCCcccc-cccccC-CCCcceEEecC---CCCCccCCC------CCC
Q 008856 297 -------CSKLE--SIAERLDNNTSLETISIYNCENLKIL-PSGLHK-LHQLREISIGS---CGNLVSFPG------GGL 356 (551)
Q Consensus 297 -------~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~-~~~L~~L~l~~---~~~l~~l~~------~~~ 356 (551)
|..+. .+......+++|++|+++. +.+... +..+.. +++|++|++++ |+.++..|. ...
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~ 433 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433 (592)
T ss_dssp SSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH
T ss_pred ccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH
Confidence 43333 2334456789999999955 666543 344444 88999999984 455554332 122
Q ss_pred CCCCccEEEEccCcc-ccc-ccccc-ccCCcccceeccc-cccc--cccC-CcCCCcceeEecCCchhhhhhhhhccccc
Q 008856 357 PCAKLTALEIYDCKR-LKA-LPKGL-HNLSTLQDLTIGG-ALLS--LEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFH 429 (551)
Q Consensus 357 ~~~~L~~L~l~~c~~-l~~-~~~~~-~~l~~L~~L~l~~-~l~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 429 (551)
.+++|+.|++++|.. ++. .+..+ ..+++|+.|++++ .+.. ++.. ..+++|++|++++|+......+.. ..
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~ 510 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA---VT 510 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH---HH
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH---HH
Confidence 255788888876653 221 11112 2355566666655 3321 1111 234566666666665221112211 34
Q ss_pred cCCCccEEEEecc
Q 008856 430 RFSSLRHLTIDGC 442 (551)
Q Consensus 430 ~l~~L~~L~l~~~ 442 (551)
.+++|++|++++|
T Consensus 511 ~l~~L~~L~ls~n 523 (592)
T 3ogk_B 511 KLPSLRYLWVQGY 523 (592)
T ss_dssp HCSSCCEEEEESC
T ss_pred hcCccCeeECcCC
Confidence 5566666666666
No 44
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.1e-21 Score=210.07 Aligned_cols=400 Identities=15% Similarity=0.172 Sum_probs=234.1
Q ss_pred CCCCCCccEEEecCCCCchhhcccC-----------cchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCcc
Q 008856 56 KPRIPKLEELKINNIQNETCIWKSH-----------NELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLE 124 (551)
Q Consensus 56 ~~~~~~L~~L~l~~~~~l~~~~~~~-----------~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~ 124 (551)
...+++|++|+++++..+.+....+ ......+++|++|++++|. ++... +..+...+++|+
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~-------~~~l~~~~~~L~ 133 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDC-------LELIAKSFKNFK 133 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHH-------HHHHHHHCTTCC
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHH-------HHHHHHhCCCCc
Confidence 3457999999999987655431000 1223568899999999974 54321 223332348999
Q ss_pred EEecccCccccc--cccccCCCCCCceEEEccCCCCcc-----cCC-CCCCCCCcEEEccCCC-CccccchhhhhccCCC
Q 008856 125 YLILSYCEGLVK--LPQSSFSLSSLREIEIFKCSSLVS-----FPE-VALPSKLKKIQIGECD-ALKSLPEAWMCDTNSS 195 (551)
Q Consensus 125 ~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~-----~~~-~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~ 195 (551)
+|++++|..+.. ++.....+++|++|++++|. ++. ++. ...+++|++|++++|. .+............++
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~ 212 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC
Confidence 999999866553 44455578999999999875 332 222 2357899999999876 2221111111123488
Q ss_pred ccEEEEecCCCcceeccc-cCCCCccEEEEecCCC------cccccccccccccCCCcccccCCccEEE-EecCCCCccc
Q 008856 196 LEILSIHGCRSLTYIAAV-QLPSSLKMLTIWYCDN------IRTLTVEEGIQCSSSSRRYTSYLLEHLG-IRYCPSLTCI 267 (551)
Q Consensus 196 L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~------l~~l~~~~~~~~~~~~~~~~~~~L~~L~-l~~c~~l~~~ 267 (551)
|++|++++|..++.++.. ..+++|+.|.+..+.. +..+ +..+.. +++|+.+. +.+
T Consensus 213 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l--~~~l~~--------~~~L~~Ls~~~~------- 275 (594)
T 2p1m_B 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL--SVALSG--------CKELRCLSGFWD------- 275 (594)
T ss_dssp CCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH--HHHHHT--------CTTCCEEECCBT-------
T ss_pred CcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH--HHHHhc--------CCCcccccCCcc-------
Confidence 999999998666654433 4467899998776532 1122 223333 55677762 222
Q ss_pred ccCCCchhhhhhccccCCCCCccEEEeccCcchhh-hHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCC-
Q 008856 268 FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLES-IAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSC- 345 (551)
Q Consensus 268 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~- 345 (551)
.....++..+..+ ++|++|++++|..... +...+..+++|++|++++|-.-..++.....+++|++|++++|
T Consensus 276 ~~~~~l~~~~~~~------~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 349 (594)
T 2p1m_B 276 AVPAYLPAVYSVC------SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE 349 (594)
T ss_dssp CCGGGGGGGHHHH------TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSC
T ss_pred cchhhHHHHHHhh------CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCc
Confidence 1222233322222 2699999999974332 3444678999999999986211122333345899999999543
Q ss_pred -------CCCccC--CCCCCCCCCccEEEEccCcccccc-cccc-ccCCcccceecc-----c--ccccccc-------C
Q 008856 346 -------GNLVSF--PGGGLPCAKLTALEIYDCKRLKAL-PKGL-HNLSTLQDLTIG-----G--ALLSLEE-------D 400 (551)
Q Consensus 346 -------~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~-~~~~-~~l~~L~~L~l~-----~--~l~~l~~-------~ 400 (551)
+.+... ......+++|+.|.+. |+.++.. +..+ .++++|+.|+++ + .+...+. .
T Consensus 350 ~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~ 428 (594)
T 2p1m_B 350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428 (594)
T ss_dssp TTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence 333211 0011124588999554 4555432 2223 357888888887 1 3322111 1
Q ss_pred CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChh
Q 008856 401 GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLE 480 (551)
Q Consensus 401 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 480 (551)
..+++|++|++++ . +.+...... ...+++|+.|++++|. +....... ....+++|++|++++|+. .
T Consensus 429 ~~~~~L~~L~L~~-~-l~~~~~~~l--~~~~~~L~~L~L~~~~----i~~~~~~~-----l~~~~~~L~~L~L~~n~~-~ 494 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-L-LTDKVFEYI--GTYAKKMEMLSVAFAG----DSDLGMHH-----VLSGCDSLRKLEIRDCPF-G 494 (594)
T ss_dssp HHCTTCCEEECCS-S-CCHHHHHHH--HHHCTTCCEEEEESCC----SSHHHHHH-----HHHHCTTCCEEEEESCSC-C
T ss_pred hhCCCccEEeecC-c-ccHHHHHHH--HHhchhccEeeccCCC----CcHHHHHH-----HHhcCCCcCEEECcCCCC-c
Confidence 2357888888866 2 322222221 2347788888888873 32111100 011357888888888654 3
Q ss_pred hhh--hhccCCCCcCEEEEcCCCC
Q 008856 481 RLS--SSIIDLRNLTELVLRGCPK 502 (551)
Q Consensus 481 ~~~--~~~~~l~~L~~L~l~~c~~ 502 (551)
... ..+..+++|++|++++|+.
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhCCCCCEEeeeCCCC
Confidence 322 3445678888888888764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.7e-19 Score=176.64 Aligned_cols=295 Identities=14% Similarity=0.152 Sum_probs=148.3
Q ss_pred CccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccc
Q 008856 61 KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS 140 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~ 140 (551)
+++.+++++ ..++.+ |.. -.++|++|+++++ .++.+++. .+..+ ++|++|++++|......|..
T Consensus 32 ~l~~l~~~~-~~l~~l---p~~---~~~~l~~L~L~~n-~i~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSD-LGLEKV---PKD---LPPDTALLDLQNN-KITEIKDG----DFKNL----KNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTT-SCCCSC---CCS---CCTTCCEEECCSS-CCCCBCTT----TTTTC----TTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecC-CCcccc---Ccc---CCCCCeEEECCCC-cCCEeChh----hhccC----CCCCEEECCCCcCCeeCHHH
Confidence 555555555 334444 322 1245566666654 35555442 23444 56666666554322222445
Q ss_pred cCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCcc
Q 008856 141 SFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLK 220 (551)
Q Consensus 141 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 220 (551)
+..+++|++|+++++ .++.++.. .+++|++|++++|. +..++...+ ..+++|+
T Consensus 96 ~~~l~~L~~L~Ls~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~------------------------~~l~~L~ 148 (330)
T 1xku_A 96 FAPLVKLERLYLSKN-QLKELPEK-MPKTLQELRVHENE-ITKVRKSVF------------------------NGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSS-CCSBCCSS-CCTTCCEEECCSSC-CCBBCHHHH------------------------TTCTTCC
T ss_pred hcCCCCCCEEECCCC-cCCccChh-hcccccEEECCCCc-ccccCHhHh------------------------cCCcccc
Confidence 555556666666553 34444431 12455555555533 222222111 2234455
Q ss_pred EEEEecCCCccccc-ccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc
Q 008856 221 MLTIWYCDNIRTLT-VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK 299 (551)
Q Consensus 221 ~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 299 (551)
.|+++++ .++..+ .+..+.. +++|++|++++ +.++. ++....+ +|++|++++|..
T Consensus 149 ~L~l~~n-~l~~~~~~~~~~~~--------l~~L~~L~l~~-n~l~~-l~~~~~~-------------~L~~L~l~~n~l 204 (330)
T 1xku_A 149 VVELGTN-PLKSSGIENGAFQG--------MKKLSYIRIAD-TNITT-IPQGLPP-------------SLTELHLDGNKI 204 (330)
T ss_dssp EEECCSS-CCCGGGBCTTGGGG--------CTTCCEEECCS-SCCCS-CCSSCCT-------------TCSEEECTTSCC
T ss_pred EEECCCC-cCCccCcChhhccC--------CCCcCEEECCC-Ccccc-CCccccc-------------cCCEEECCCCcC
Confidence 5555543 222110 0233333 55677777777 33444 3333222 488888888765
Q ss_pred hhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccc
Q 008856 300 LESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKG 378 (551)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 378 (551)
....+..+..+++|+.|++++ +.+..+ +..+..+++|++|++++| .+..+|.....+++|+.|++++| .++.++..
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred CccCHHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChh
Confidence 554556677778888888877 445555 335666777777777774 55556554445556666666663 34443321
Q ss_pred -cccCCcccceeccccccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 379 -LHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 379 -~~~l~~L~~L~l~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+.... .....+.|+.|++++|+.......... +..+++++.+++++|
T Consensus 282 ~f~~~~---------------~~~~~~~l~~l~l~~N~~~~~~i~~~~--f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 282 DFCPPG---------------YNTKKASYSGVSLFSNPVQYWEIQPST--FRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCSS---------------CCTTSCCCSEEECCSSSSCGGGSCGGG--GTTCCCGGGEEC---
T ss_pred hcCCcc---------------cccccccccceEeecCcccccccCccc--cccccceeEEEeccc
Confidence 11100 001235677777777774321111111 566777777777665
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.1e-19 Score=179.45 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=40.4
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccCC--------cCCCcceeEecCCchhhhhhhhhcccccc
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDG--------LPTNLHSLVIRGNMEIWKSMIEWGRGFHR 430 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 430 (551)
+|+.|++++| .++.+|..+..+++|+.|++++ .+..++... ..++|+.|++.+|+.......... +..
T Consensus 242 ~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~--~~~ 318 (332)
T 2ft3_A 242 TLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT--FRC 318 (332)
T ss_dssp TCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG--GTT
T ss_pred CCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc--ccc
Confidence 4444444442 3444554455555555555555 444443221 135677888888874322122111 667
Q ss_pred CCCccEEEEecc
Q 008856 431 FSSLRHLTIDGC 442 (551)
Q Consensus 431 l~~L~~L~l~~~ 442 (551)
+++|+.+++++|
T Consensus 319 l~~L~~l~l~~n 330 (332)
T 2ft3_A 319 VTDRLAIQFGNY 330 (332)
T ss_dssp BCCSTTEEC---
T ss_pred cchhhhhhcccc
Confidence 777777777766
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=5.9e-19 Score=174.20 Aligned_cols=284 Identities=18% Similarity=0.230 Sum_probs=176.4
Q ss_pred cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhh
Q 008856 32 DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKD 111 (551)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 111 (551)
.+++.+++.++... .+|..+ .+++++|++++ +.++.+ +...+..+++|++|+++++ .++.+.+.
T Consensus 31 c~l~~l~~~~~~l~----~lp~~~---~~~l~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~---- 94 (330)
T 1xku_A 31 CHLRVVQCSDLGLE----KVPKDL---PPDTALLDLQN-NKITEI---KDGDFKNLKNLHTLILINN-KISKISPG---- 94 (330)
T ss_dssp EETTEEECTTSCCC----SCCCSC---CTTCCEEECCS-SCCCCB---CTTTTTTCTTCCEEECCSS-CCCCBCTT----
T ss_pred CCCeEEEecCCCcc----ccCccC---CCCCeEEECCC-CcCCEe---ChhhhccCCCCCEEECCCC-cCCeeCHH----
Confidence 35677776665433 244332 36889999998 567776 6666788999999999986 47777543
Q ss_pred hhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCcc--ccchh
Q 008856 112 QQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALK--SLPEA 187 (551)
Q Consensus 112 ~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~--~~~~~ 187 (551)
++..+ ++|++|++++| .+..+|..+. ++|++|+++++ .++.++. +..+++|++|++++|.... ..+..
T Consensus 95 ~~~~l----~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 95 AFAPL----VKLERLYLSKN-QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp TTTTC----TTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred HhcCC----CCCCEEECCCC-cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhh
Confidence 36666 89999999985 4567776554 78999999985 5666665 5678999999998865321 11111
Q ss_pred hhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCccc
Q 008856 188 WMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI 267 (551)
Q Consensus 188 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 267 (551)
+ ..+++|+.|+++++. ++.++.. ..++|+ +|+++++ .++.
T Consensus 167 ~--~~l~~L~~L~l~~n~-l~~l~~~-~~~~L~----------------------------------~L~l~~n-~l~~- 206 (330)
T 1xku_A 167 F--QGMKKLSYIRIADTN-ITTIPQG-LPPSLT----------------------------------ELHLDGN-KITK- 206 (330)
T ss_dssp G--GGCTTCCEEECCSSC-CCSCCSS-CCTTCS----------------------------------EEECTTS-CCCE-
T ss_pred c--cCCCCcCEEECCCCc-cccCCcc-ccccCC----------------------------------EEECCCC-cCCc-
Confidence 1 223666666666632 3333321 123444 4444442 2222
Q ss_pred ccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCC
Q 008856 268 FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGN 347 (551)
Q Consensus 268 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 347 (551)
.+.. .+..+ ++|++|++++|......+..+..+++|+.|++++ +.+..+|..+..+++|++|++++| .
T Consensus 207 ~~~~----~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~ 274 (330)
T 1xku_A 207 VDAA----SLKGL------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN-N 274 (330)
T ss_dssp ECTG----GGTTC------TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS-C
T ss_pred cCHH----HhcCC------CCCCEEECCCCcCceeChhhccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCC-c
Confidence 1111 11111 1477888877765444455677888999999998 567788888888999999999984 5
Q ss_pred CccCCCCCC-------CCCCccEEEEccCcccc--ccccccccCCcccceecc
Q 008856 348 LVSFPGGGL-------PCAKLTALEIYDCKRLK--ALPKGLHNLSTLQDLTIG 391 (551)
Q Consensus 348 l~~l~~~~~-------~~~~L~~L~l~~c~~l~--~~~~~~~~l~~L~~L~l~ 391 (551)
++.++.... ..++++.+++.+++... ..|..+..+.+++.++++
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 666554222 12467777777654211 122344445555555543
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=2.2e-21 Score=200.90 Aligned_cols=385 Identities=18% Similarity=0.204 Sum_probs=189.8
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP- 138 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~- 138 (551)
++|++|++++ +.+.+. .....+..+++|++|++++|. ++......+...+..+ ++|++|++++|..-...+
T Consensus 3 ~~l~~L~Ls~-~~l~~~--~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~----~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQC-EELSDA--RWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVN----PALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEEEES-CCCCHH--HHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHHHH
T ss_pred ccceehhhhh-cccCch--hHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhC----CCcCEEeCCCCcCChHHHH
Confidence 5778888877 445443 122335678888888888875 6543332333344444 888888888864222111
Q ss_pred cccCCCC----CCceEEEccCCCCcc-----cCC-CCCCCCCcEEEccCCCCccccchhhhhc----cCCCccEEEEecC
Q 008856 139 QSSFSLS----SLREIEIFKCSSLVS-----FPE-VALPSKLKKIQIGECDALKSLPEAWMCD----TNSSLEILSIHGC 204 (551)
Q Consensus 139 ~~~~~l~----~L~~L~l~~c~~l~~-----~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~L~~L~l~~~ 204 (551)
.....++ +|++|++++| .++. ++. +..+++|++|++++|. +.......... ..++|++|++++|
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 1122233 5888888775 3442 222 4556777777777755 33221111100 1133444444443
Q ss_pred CCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccC
Q 008856 205 RSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGN 284 (551)
Q Consensus 205 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~ 284 (551)
. ++... ...+ +..+.. +++|++|+++++. +.+ .+...+...+. .
T Consensus 153 ~-l~~~~------------------~~~l--~~~l~~--------~~~L~~L~L~~n~-i~~-~~~~~l~~~l~-----~ 196 (461)
T 1z7x_W 153 S-LSAAS------------------CEPL--ASVLRA--------KPDFKELTVSNND-INE-AGVRVLCQGLK-----D 196 (461)
T ss_dssp C-CBGGG------------------HHHH--HHHHHH--------CTTCCEEECCSSB-CHH-HHHHHHHHHHH-----H
T ss_pred C-CCHHH------------------HHHH--HHHHhh--------CCCCCEEECcCCC-cch-HHHHHHHHHHh-----c
Confidence 1 11100 0000 111111 2234444444321 111 00000000000 0
Q ss_pred CCCCccEEEeccCcchh----hhHhhhcCCCCCcEEEEecCCCcccc------cccccCCCCcceEEecCCCCCccCCCC
Q 008856 285 LPPSLKSLRVRYCSKLE----SIAERLDNNTSLETISIYNCENLKIL------PSGLHKLHQLREISIGSCGNLVSFPGG 354 (551)
Q Consensus 285 ~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~l~~~~~l~~l~~~ 354 (551)
..++|++|++++|.... .++..+..+++|++|++++| .+... +.....++
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~------------------- 256 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSS------------------- 256 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTC-------------------
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCC-------------------
Confidence 00135555555554322 13334444555555555553 22221 01111234
Q ss_pred CCCCCCccEEEEccCccccc-----cccccccCCcccceeccc-cccc-----cccC--CcCCCcceeEecCCchhhhhh
Q 008856 355 GLPCAKLTALEIYDCKRLKA-----LPKGLHNLSTLQDLTIGG-ALLS-----LEED--GLPTNLHSLVIRGNMEIWKSM 421 (551)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~-----~~~~~~~l~~L~~L~l~~-~l~~-----l~~~--~~~~~L~~L~l~~~~~~~~~~ 421 (551)
+|++|++++| .++. ++..+.++++|+.|++++ .+.. +... ...++|++|++++|.......
T Consensus 257 -----~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 257 -----RLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp -----CCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred -----CceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 5555555554 2332 444555566677777766 3321 1111 123689999999888544322
Q ss_pred hhhccccccCCCccEEEEeccCCCCcccccccccccccccc-cccccccccccccCCChh-----hhhhhccCCCCcCEE
Q 008856 422 IEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVL-RLPTTLTSLRIEDFPNLE-----RLSSSIIDLRNLTEL 495 (551)
Q Consensus 422 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L 495 (551)
......+..+++|++|++++|. +....... ....+ ...++|++|++++| .++ .++..+..+++|++|
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~----i~~~~~~~--l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNR----LEDAGVRE--LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSB----CHHHHHHH--HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHhhCCCccEEEccCCc----cccccHHH--HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEE
Confidence 2222226678999999999883 43332111 00000 01468999999994 666 577778889999999
Q ss_pred EEcCCCCccccCC-------CCCccccceEeecCCc
Q 008856 496 VLRGCPKLKYFPE-------KGLPSSLLELWISGCP 524 (551)
Q Consensus 496 ~l~~c~~l~~l~~-------~~~~~~L~~L~i~~c~ 524 (551)
++++|+ +..... .....+|+.|.+.++.
T Consensus 404 ~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 404 DLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp ECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred ECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 999964 543210 0112367778777663
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=4e-19 Score=175.54 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=65.7
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCC-------CCCC
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGL-------PCAK 360 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-------~~~~ 360 (551)
+|++|++++|......+..+..+++|+.|++++ +.+..+|..+..+++|++|++++| .++.++.... ..++
T Consensus 218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCEEECCCCcCCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCC-CCCccChhHcccccccccccc
Confidence 488888888765554455677888888888888 567778777888888888888884 5555543211 1246
Q ss_pred ccEEEEccCccc--cccccccccCCcccceecc
Q 008856 361 LTALEIYDCKRL--KALPKGLHNLSTLQDLTIG 391 (551)
Q Consensus 361 L~~L~l~~c~~l--~~~~~~~~~l~~L~~L~l~ 391 (551)
|+.|++.+++.. ...+..+..+++|+.++++
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred ccceEeecCcccccccCcccccccchhhhhhcc
Confidence 777777775432 2223445555555555553
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.2e-19 Score=178.70 Aligned_cols=194 Identities=24% Similarity=0.407 Sum_probs=101.8
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCC---------CC
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLP---------CA 359 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~---------~~ 359 (551)
|++|++++|... .++..++.+++|++|++++ +.+..+|..+..+++|++|++++|+....+|..... ++
T Consensus 106 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~ 183 (328)
T 4fcg_A 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183 (328)
T ss_dssp CSEEEEESSCCC-CCCSCGGGGTTCSEEEEES-CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred CCEEECCCCCcc-chhHHHhccCCCCEEECCC-CccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence 566666555433 4455556666666666666 445566666666666666666666655555543221 44
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEE
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHL 437 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 437 (551)
+|++|++++| .++.+|..+.++++|+.|++++ .+..++.. +.+++|++|++++|...... +.+ +..+++|++|
T Consensus 184 ~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~---~~~l~~L~~L 258 (328)
T 4fcg_A 184 NLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPI---FGGRAPLKRL 258 (328)
T ss_dssp TCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC-CCC---TTCCCCCCEE
T ss_pred CCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh-HHH---hcCCCCCCEE
Confidence 6666666663 4445555556666666666655 44444332 33455555555555533321 111 3445555555
Q ss_pred EEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcC
Q 008856 438 TIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRG 499 (551)
Q Consensus 438 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 499 (551)
++++| .. ...+|... ..+++|++|++++|+.++.+|.++.++++|+.+++..
T Consensus 259 ~L~~n-~~--~~~~p~~~-------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 259 ILKDC-SN--LLTLPLDI-------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ECTTC-TT--CCBCCTTG-------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ECCCC-Cc--hhhcchhh-------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 55554 22 33344322 2344555555555555555555555555555555543
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=6.7e-22 Score=204.83 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=72.6
Q ss_pred CCcceEEeCCCCCcc-----ccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcc
Q 008856 12 PALCKMEIGGCKKVV-----WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD 86 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 86 (551)
++|++|++++++... +...+++|+.|++.+|.........-+.....+++|++|+++++ .+.+. +.......
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~--~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDV--GVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHH--HHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChH--HHHHHHHH
Confidence 567788887775433 12235666666666665432211111111223566666666663 34332 01111222
Q ss_pred cC----CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccc----cccc-cCCCCCCceEEEccCCC
Q 008856 87 IC----SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK----LPQS-SFSLSSLREIEIFKCSS 157 (551)
Q Consensus 87 l~----~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~----~~~~-~~~l~~L~~L~l~~c~~ 157 (551)
++ +|++|++++|. ++......+...+..+ ++|++|++++|..-.. +... ....++|++|++++| .
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~----~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~ 153 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTL----PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-S 153 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSC----TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-C
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccC----CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-C
Confidence 33 46666666653 4432222222233433 6666666666532111 1111 112345666666664 3
Q ss_pred CcccC-----C-CCCCCCCcEEEccCCC
Q 008856 158 LVSFP-----E-VALPSKLKKIQIGECD 179 (551)
Q Consensus 158 l~~~~-----~-~~~~~~L~~L~l~~~~ 179 (551)
++... . +..+++|++|++++|.
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 33211 1 2234566666666644
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=2.1e-19 Score=176.85 Aligned_cols=217 Identities=24% Similarity=0.325 Sum_probs=177.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+++.|++++|.. ..++..+..+++|++|++++ +.+..+|..+..+++|++|++++| .+..+|.....+++|++|+++
T Consensus 82 ~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPL-PQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCC-SSCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCc-hhcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 589999998864 46777788899999999999 567788988999999999999995 666888766677799999999
Q ss_pred cCcccccccccccc---------CCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccE
Q 008856 368 DCKRLKALPKGLHN---------LSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRH 436 (551)
Q Consensus 368 ~c~~l~~~~~~~~~---------l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 436 (551)
+|+....+|..+.. +++|+.|++++ .+..+|.. +.+++|++|++++|.... ..+. +..+++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~----l~~l~~L~~ 233 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPA----IHHLPKLEE 233 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGG----GGGCTTCCE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchh----hccCCCCCE
Confidence 99988888877654 99999999999 77777764 567899999999998442 2222 678999999
Q ss_pred EEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC-CCcccc
Q 008856 437 LTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-GLPSSL 515 (551)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L 515 (551)
|++++| .. ...+|... ..+++|++|++++|+....+|..+..+++|++|++++|+.+..+|.. +-+++|
T Consensus 234 L~Ls~n-~~--~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 234 LDLRGC-TA--LRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp EECTTC-TT--CCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred EECcCC-cc--hhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 999998 34 55566544 36789999999998888889988999999999999999999988874 235678
Q ss_pred ceEeecC
Q 008856 516 LELWISG 522 (551)
Q Consensus 516 ~~L~i~~ 522 (551)
+.+.+..
T Consensus 304 ~~l~l~~ 310 (328)
T 4fcg_A 304 CIILVPP 310 (328)
T ss_dssp CEEECCG
T ss_pred eEEeCCH
Confidence 8887763
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=171.45 Aligned_cols=223 Identities=17% Similarity=0.208 Sum_probs=151.9
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccccc-ccCCCCcceEEecCCCCCccCCC--CCCCCCCccEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCGNLVSFPG--GGLPCAKLTAL 364 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L 364 (551)
+|++|++++|......+..+..+++|++|++++ +.+..++.. +..+++|++|++++| .++.++. ....+++|+.|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEE
Confidence 488888887755444455677788888888888 556666544 677888888888884 5556665 34456688888
Q ss_pred EEccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEe
Q 008856 365 EIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTID 440 (551)
Q Consensus 365 ~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 440 (551)
++++|..++.++ ..+.++++|+.|++++ .+..+... ..+++|++|++++|.. ....... +..+++|++|+++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~---~~~~~~L~~L~L~ 230 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIF---VDVTSSVECLELR 230 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHH---HHHTTTEEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhh---hhhcccccEEECC
Confidence 888876666663 5677888888888887 66555322 4578899999998884 3333222 4568899999999
Q ss_pred ccCCCCcccccccccccccccccccccccccccccC----CChhhhhhhccCCCCcCEEEEcCCCCccccCCCC--Cccc
Q 008856 441 GCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDF----PNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSS 514 (551)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~ 514 (551)
+|. +..++..... .....+.++.++++++ +.+..+|.++..+++|++|++++ ++++.+|... .+++
T Consensus 231 ~n~----l~~~~~~~l~---~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~ 302 (353)
T 2z80_A 231 DTD----LDTFHFSELS---TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIFDRLTS 302 (353)
T ss_dssp SCB----CTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCc----cccccccccc---cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHHhcCCC
Confidence 984 5544332100 0012334455555442 34456777888999999999999 4688888753 3689
Q ss_pred cceEeecCCc
Q 008856 515 LLELWISGCP 524 (551)
Q Consensus 515 L~~L~i~~c~ 524 (551)
|++|++++|+
T Consensus 303 L~~L~L~~N~ 312 (353)
T 2z80_A 303 LQKIWLHTNP 312 (353)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeeCCC
Confidence 9999999885
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=6.6e-19 Score=172.27 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=142.5
Q ss_pred CccEEEecc-CcchhhhHhhhcCCCCCcEEEEecCCCcc-cccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEE
Q 008856 288 SLKSLRVRY-CSKLESIAERLDNNTSLETISIYNCENLK-ILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 365 (551)
+|++|++++ |.....++..+..+++|++|++++ +.+. .+|..+..+++|++|++++|.-...+|.....+++|++|+
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcC-CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 366666663 444445555566666777777766 3343 4566666667777777766432224444444455677777
Q ss_pred EccCccccccccccccCC-cccceeccc-ccc-ccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKALPKGLHNLS-TLQDLTIGG-ALL-SLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~-~L~~L~l~~-~l~-~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
+++|.....+|..+..++ +|+.|++++ .+. .++.. ..++ |++|++++|.... ..+.. +..+++|++|++++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DASVL---FGSDKNTQKIHLAK 230 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-CCGGG---CCTTSCCSEEECCS
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-cCCHH---HhcCCCCCEEECCC
Confidence 776443335666666666 777777776 444 23332 2233 8888888887433 22222 67888999999998
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChh-hhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEee
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLE-RLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWI 520 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i 520 (551)
|. +...+... ..+++|++|++++ +.+. .+|..+..+++|++|++++|+--..+|.....++|+.+++
T Consensus 231 N~----l~~~~~~~-------~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l 298 (313)
T 1ogq_A 231 NS----LAFDLGKV-------GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp SE----ECCBGGGC-------CCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred Cc----eeeecCcc-------cccCCCCEEECcC-CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence 83 44333222 2568899999998 5666 6778888899999999999654347777666788999999
Q ss_pred cCCchH
Q 008856 521 SGCPLI 526 (551)
Q Consensus 521 ~~c~~l 526 (551)
.+++.+
T Consensus 299 ~~N~~l 304 (313)
T 1ogq_A 299 ANNKCL 304 (313)
T ss_dssp CSSSEE
T ss_pred cCCCCc
Confidence 988754
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=5.2e-18 Score=174.29 Aligned_cols=197 Identities=18% Similarity=0.231 Sum_probs=133.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+.++++|++|++++ +.+..++. .+..+++|++|++++| .+..++. ....+++|+.|+
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeC
Confidence 477777777765444456677777788888777 45666643 4667777888888774 4555544 344556788888
Q ss_pred EccCcccccccc-ccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
+++|+.+..++. .+.++++|+.|++++ .+..++....+++|++|++++|.. ....+.. +..+++|++|++++|.
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL-SAIRPGS---FQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC-CEECTTT---TTTCTTCCEEECTTCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc-CccChhh---hccCccCCEEECCCCc
Confidence 877777776654 467777888888877 777777666677888888888763 3232332 6677888888888773
Q ss_pred CCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 444 DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
+..++... +..+++|+.|++++ +.++.++ ..+..+++|++|++++++
T Consensus 243 ----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 243 ----IQVIERNA------FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ----CCEECTTS------STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ----eeEEChhh------hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 55554432 23567788888887 6777776 445667888888887754
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=7.4e-18 Score=173.79 Aligned_cols=197 Identities=23% Similarity=0.283 Sum_probs=132.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+.++++|++|++++ +.+..++. .+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEe
Confidence 377777777755444455677777777777777 45666633 3566777777777774 4555544 344556777788
Q ss_pred EccCcccccccc-ccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
+++|+.++.++. .+.++++|+.|++++ .+..++....+++|++|++++|.... ..+.. +..+++|+.|++++|.
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE-IRPGS---FHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE-ECGGG---GTTCTTCCEEECTTSC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc-cCccc---ccCccCCCEEEeCCCc
Confidence 877777776654 466777888888877 66677666667788888888877333 32332 6677888888888773
Q ss_pred CCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 444 DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
+..++... +..+++|+.|++++ ++++.+| ..+..+++|++|++++++
T Consensus 254 ----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 254 ----VSLIERNA------FDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ----CCEECTTT------TTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ----CceECHHH------hcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 55554422 23457788888887 5777776 445667888888887754
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=2.9e-17 Score=163.64 Aligned_cols=249 Identities=23% Similarity=0.264 Sum_probs=123.7
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. ++..+ ++|++|++++| .+..++.
T Consensus 52 ~~L~~L~l~~-n~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSN-NRITYI---SNSDLQRCVNLQALVLTSN-GINTIEED----SFSSL----GSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp TTCCEEECTT-SCCCEE---CTTTTTTCTTCCEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSS-CCSSCCH
T ss_pred ccCcEEECCC-CcCccc---CHHHhccCCCCCEEECCCC-ccCccCHh----hcCCC----CCCCEEECCCC-cCCcCCH
Confidence 4667777776 455555 5545666677777777764 36555442 24444 66777777664 3444443
Q ss_pred c-cCCCCCCceEEEccCCCCcccCC---CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc--
Q 008856 140 S-SFSLSSLREIEIFKCSSLVSFPE---VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-- 213 (551)
Q Consensus 140 ~-~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-- 213 (551)
. +..+++|++|+++++ .++.++. +..+++|++|++++|..+..++...+ ..+++|+.|++++|. ++.+...
T Consensus 118 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~l 194 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASD-LQSYEPKSL 194 (353)
T ss_dssp HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETT-CCEECTTTT
T ss_pred hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCC-cCccCHHHH
Confidence 3 566667777777663 4555544 44566677777766654444433211 223566666666643 3333211
Q ss_pred cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEE
Q 008856 214 QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLR 293 (551)
Q Consensus 214 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 293 (551)
..+++|+.|+++++ .+..+ +..+.. .+++|++|+++++ .++. ++...++. ......++.++
T Consensus 195 ~~l~~L~~L~l~~n-~l~~~--~~~~~~-------~~~~L~~L~L~~n-~l~~-~~~~~l~~-------~~~~~~l~~l~ 255 (353)
T 2z80_A 195 KSIQNVSHLILHMK-QHILL--LEIFVD-------VTSSVECLELRDT-DLDT-FHFSELST-------GETNSLIKKFT 255 (353)
T ss_dssp TTCSEEEEEEEECS-CSTTH--HHHHHH-------HTTTEEEEEEESC-BCTT-CCCC-------------CCCCCCEEE
T ss_pred hccccCCeecCCCC-ccccc--hhhhhh-------hcccccEEECCCC-cccc-cccccccc-------ccccchhhccc
Confidence 33456666666664 33433 332211 1345666666663 3333 22111111 00011344555
Q ss_pred eccCcch----hhhHhhhcCCCCCcEEEEecCCCcccccccc-cCCCCcceEEecCC
Q 008856 294 VRYCSKL----ESIAERLDNNTSLETISIYNCENLKILPSGL-HKLHQLREISIGSC 345 (551)
Q Consensus 294 l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~ 345 (551)
++++... ..++..+..+++|+.|++++ +.+..+|..+ ..+++|++|++++|
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCC
Confidence 5444322 12344445555555555555 3444444432 44555555555553
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=5e-17 Score=172.29 Aligned_cols=131 Identities=27% Similarity=0.284 Sum_probs=65.5
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
|+.|++++|... .++ ..+++|+.|++++ +.+..+|.. +++|+.|++++| .++.++.. +++|+.|++++
T Consensus 163 L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~-N~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~ 230 (622)
T 3g06_A 163 LCKLWAYNNQLT-SLP---MLPSGLQELSVSD-NQLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSG 230 (622)
T ss_dssp CCEEECCSSCCS-CCC---CCCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTTCCEEECCS
T ss_pred CCEEECCCCCCC-CCc---ccCCCCcEEECCC-CCCCCCCCc---cchhhEEECcCC-cccccCCC---CCCCCEEEccC
Confidence 555555555322 222 3345555555555 344444322 345566666553 44444432 23566666665
Q ss_pred CccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 369 CKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 369 c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
| .++.+| ..+++|+.|++++ .+..+|. .+++|++|++++|... .+ +.. +..+++|+.|++++|
T Consensus 231 N-~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~l-p~~---l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 231 N-RLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RL-PES---LIHLSSETTVNLEGN 294 (622)
T ss_dssp S-CCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SC-CGG---GGGSCTTCEEECCSC
T ss_pred C-ccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cC-CHH---HhhccccCEEEecCC
Confidence 3 344444 2345555666655 5555554 4456666666666522 22 221 455666666666666
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=7.3e-18 Score=164.81 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=97.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcc-cccccccCCC-CcceEEecCCCCCccCCCCCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLK-ILPSGLHKLH-QLREISIGSCGNLVSFPGGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 365 (551)
+|++|++++|.....++..+..+++|++|++++ +.+. .+|..+..++ +|++|++++|.....+|.....+ +|+.|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEE
Confidence 477777777655445566666677777777777 3344 5566666665 67777777643322344433333 367777
Q ss_pred EccCccccccccccccCCcccceeccc-cccc-cccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGG-ALLS-LEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
+++|......|..+..+++|+.|++++ .+.. ++....+++|++|++++|.... ..+.+ +..+++|++|++++|.
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~---l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-TLPQG---LTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-CCCGG---GGGCTTCCEEECCSSE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC-cCChH---HhcCcCCCEEECcCCc
Confidence 766543334455566666677666666 4432 2333445666666666666322 12222 5566666666666662
Q ss_pred CCCccc-ccccccccccccccccccccccccccCCCh
Q 008856 444 DDTMMV-SFPLEDKRLGTVLRLPTTLTSLRIEDFPNL 479 (551)
Q Consensus 444 ~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 479 (551)
+. .+|... .+++|+.+++++.+.+
T Consensus 280 ----l~~~ip~~~--------~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 280 ----LCGEIPQGG--------NLQRFDVSAYANNKCL 304 (313)
T ss_dssp ----EEEECCCST--------TGGGSCGGGTCSSSEE
T ss_pred ----ccccCCCCc--------cccccChHHhcCCCCc
Confidence 33 344322 3456666666664333
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=7.4e-17 Score=171.02 Aligned_cols=253 Identities=26% Similarity=0.306 Sum_probs=137.3
Q ss_pred CccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccc
Q 008856 61 KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS 140 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~ 140 (551)
++++|++++ +.++.+ |... .++|++|++++| .++.++. .+++|++|++++| .+..+|.
T Consensus 41 ~l~~L~ls~-n~L~~l---p~~l---~~~L~~L~L~~N-~l~~lp~------------~l~~L~~L~Ls~N-~l~~lp~- 98 (622)
T 3g06_A 41 GNAVLNVGE-SGLTTL---PDCL---PAHITTLVIPDN-NLTSLPA------------LPPELRTLEVSGN-QLTSLPV- 98 (622)
T ss_dssp CCCEEECCS-SCCSCC---CSCC---CTTCSEEEECSC-CCSCCCC------------CCTTCCEEEECSC-CCSCCCC-
T ss_pred CCcEEEecC-CCcCcc---Chhh---CCCCcEEEecCC-CCCCCCC------------cCCCCCEEEcCCC-cCCcCCC-
Confidence 577777777 456665 5432 267777777775 3666544 1267777777775 3556664
Q ss_pred cCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCcc
Q 008856 141 SFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLK 220 (551)
Q Consensus 141 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 220 (551)
.+++|++|+++++ .++.++. .+++|+.|++++|. +..++.. .++|++|++++| .++.++ ..+++|+
T Consensus 99 --~l~~L~~L~Ls~N-~l~~l~~--~l~~L~~L~L~~N~-l~~lp~~-----l~~L~~L~Ls~N-~l~~l~--~~~~~L~ 164 (622)
T 3g06_A 99 --LPPGLLELSIFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLPVL-----PPGLQELSVSDN-QLASLP--ALPSELC 164 (622)
T ss_dssp --CCTTCCEEEECSC-CCCCCCC--CCTTCCEEECCSSC-CSCCCCC-----CTTCCEEECCSS-CCSCCC--CCCTTCC
T ss_pred --CCCCCCEEECcCC-cCCCCCC--CCCCcCEEECCCCC-CCcCCCC-----CCCCCEEECcCC-cCCCcC--CccCCCC
Confidence 5677777777763 5666655 56677777777654 4444432 256777777664 344443 2345666
Q ss_pred EEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcch
Q 008856 221 MLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKL 300 (551)
Q Consensus 221 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~ 300 (551)
.|+++++ .++.+ |.. +++|+.|++++ +.++. ++.. . ++|+.|++++|...
T Consensus 165 ~L~L~~N-~l~~l--~~~-----------~~~L~~L~Ls~-N~l~~-l~~~-~-------------~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 165 KLWAYNN-QLTSL--PML-----------PSGLQELSVSD-NQLAS-LPTL-P-------------SELYKLWAYNNRLT 214 (622)
T ss_dssp EEECCSS-CCSCC--CCC-----------CTTCCEEECCS-SCCSC-CCCC-C-------------TTCCEEECCSSCCS
T ss_pred EEECCCC-CCCCC--ccc-----------CCCCcEEECCC-CCCCC-CCCc-c-------------chhhEEECcCCccc
Confidence 6666653 44444 422 22466666665 33333 2211 1 13666666655322
Q ss_pred hhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccc
Q 008856 301 ESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLH 380 (551)
Q Consensus 301 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 380 (551)
.++. .+++|+.|++++ +.+..+| ..+++|++|++++| .++.+|. .+++|+.|++++| .++.+|..+.
T Consensus 215 -~l~~---~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 215 -SLPA---LPSGLKELIVSG-NRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp -SCCC---CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred -ccCC---CCCCCCEEEccC-CccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHh
Confidence 2221 235566666655 3454444 23455666666653 4444444 2335566666553 3445555555
Q ss_pred cCCcccceeccc
Q 008856 381 NLSTLQDLTIGG 392 (551)
Q Consensus 381 ~l~~L~~L~l~~ 392 (551)
++++|+.|++++
T Consensus 282 ~l~~L~~L~L~~ 293 (622)
T 3g06_A 282 HLSSETTVNLEG 293 (622)
T ss_dssp GSCTTCEEECCS
T ss_pred hccccCEEEecC
Confidence 555555554444
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=6.8e-18 Score=165.43 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=101.9
Q ss_pred CCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCc
Q 008856 194 SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNEL 273 (551)
Q Consensus 194 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 273 (551)
++|+.|++++| .++.++.. .+++|+.|+++++ .++.+. +..+.. +++|++|+++++ .++. .+...+
T Consensus 99 ~~L~~L~l~~n-~l~~~~~~-~~~~L~~L~l~~N-~l~~~~-~~~~~~--------l~~L~~L~Ls~N-~l~~-~~~~~~ 164 (317)
T 3o53_A 99 PSIETLHAANN-NISRVSCS-RGQGKKNIYLANN-KITMLR-DLDEGC--------RSRVQYLDLKLN-EIDT-VNFAEL 164 (317)
T ss_dssp TTCCEEECCSS-CCSEEEEC-CCSSCEEEECCSS-CCCSGG-GBCTGG--------GSSEEEEECTTS-CCCE-EEGGGG
T ss_pred CCcCEEECCCC-ccCCcCcc-ccCCCCEEECCCC-CCCCcc-chhhhc--------cCCCCEEECCCC-CCCc-ccHHHH
Confidence 34555555443 22333222 2345666666663 333330 223333 456777777763 3443 222111
Q ss_pred hhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC
Q 008856 274 PATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG 353 (551)
Q Consensus 274 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 353 (551)
.. .+ ++|++|++++|.... ++ ....+++|++|++++ +.+..++..+..+++|++|++++| .++.+|.
T Consensus 165 ~~---~l------~~L~~L~L~~N~l~~-~~-~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 165 AA---SS------DTLEHLNLQYNFIYD-VK-GQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp GG---GT------TTCCEEECTTSCCCE-EE-CCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred hh---cc------CcCCEEECCCCcCcc-cc-cccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhh
Confidence 10 00 147888888775432 22 233478888888888 567777666777888888888884 6667776
Q ss_pred CCCCCCCccEEEEccCccc-cccccccccCCcccceeccc
Q 008856 354 GGLPCAKLTALEIYDCKRL-KALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l-~~~~~~~~~l~~L~~L~l~~ 392 (551)
....+++|+.|++++++.. ..++..+..+++|+.+++.+
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 6666678888888886543 35666777788888888875
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.4e-17 Score=162.49 Aligned_cols=125 Identities=20% Similarity=0.157 Sum_probs=62.9
Q ss_pred ccEEEeccCcchhh--hHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC--CCCCCCCccEE
Q 008856 289 LKSLRVRYCSKLES--IAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG--GGLPCAKLTAL 364 (551)
Q Consensus 289 L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L 364 (551)
|++|++++|..... .+..+..+++|++|++++ +.+..++..+..+++|++|++++| .+..++. ....+++|+.|
T Consensus 54 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp CSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCcccCcccccccccccCEEECCC-CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEE
Confidence 66666666643211 133444566666666666 445555555666666666666663 3333332 23334466666
Q ss_pred EEccCccccccccccccCCcccceeccc-cccc--cccC-CcCCCcceeEecCCc
Q 008856 365 EIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLS--LEED-GLPTNLHSLVIRGNM 415 (551)
Q Consensus 365 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~--l~~~-~~~~~L~~L~l~~~~ 415 (551)
++++|......+..+..+++|+.|++++ .+.. ++.. ..+++|++|++++|.
T Consensus 132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 6665433223334445555555555555 3322 2221 234445555554444
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=1.6e-16 Score=163.82 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=59.7
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
+++++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|+|++| .+..++.
T Consensus 75 ~~l~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~Ls~n-~i~~~~~~----~~~~l----~~L~~L~L~~n-~l~~~~~ 140 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMI---QADTFRHLHHLEVLQLGRN-SIRQIEVG----AFNGL----ASLNTLELFDN-WLTVIPS 140 (452)
T ss_dssp TTCSEEECCS-SCCCEE---CTTTTTTCTTCCEEECCSS-CCCEECTT----TTTTC----TTCCEEECCSS-CCSBCCT
T ss_pred CCccEEECcC-CcCceE---CHHHcCCCCCCCEEECCCC-ccCCcChh----hccCc----ccCCEEECCCC-cCCccCh
Confidence 4566666666 345544 4445566666666666664 35555442 24444 66666666664 3344432
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccc
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLP 185 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~ 185 (551)
.+..+++|++|+++++ .++.++. +..+++|++|++++|..+..++
T Consensus 141 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp TTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred hhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 3555666666666653 4444443 3445556666665555444443
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.9e-16 Score=162.61 Aligned_cols=128 Identities=19% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++++.|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|+|++| .+..++.
T Consensus 64 ~~l~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~Ls~n-~i~~i~~~----~~~~l----~~L~~L~L~~n-~l~~~~~ 129 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQII---KVNSFKHLRHLEILQLSRN-HIRTIEIG----AFNGL----ANLNTLELFDN-RLTTIPN 129 (440)
T ss_dssp TTCSEEECCS-CCCCEE---CTTTTSSCSSCCEEECCSS-CCCEECGG----GGTTC----SSCCEEECCSS-CCSSCCT
T ss_pred CCCcEEEccC-CcCCee---CHHHhhCCCCCCEEECCCC-cCCccChh----hccCC----ccCCEEECCCC-cCCeeCH
Confidence 5667777776 455655 5555666777777777764 36665542 34545 67777777764 4444443
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEec
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHG 203 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 203 (551)
.+..+++|++|+++++ .++.++. +..+++|++|++++|..+..++...+ ..+++|+.|++++
T Consensus 130 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAM 194 (440)
T ss_dssp TTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCSSCCEEECTT
T ss_pred hHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchh-hcccccCeecCCC
Confidence 4666677777777663 4555554 44566666666666555554443211 1224444444444
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=8.7e-17 Score=155.09 Aligned_cols=197 Identities=22% Similarity=0.237 Sum_probs=128.3
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|++++ +.+..+ +..+..+++|++|++++|..+..+ +.....+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 477777777755444445567777777777777 455555 556677777888887776545555 33444456777777
Q ss_pred EccCcccccc-ccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
+++|. ++.+ +..+.++++|++|++++ .+..++.. ..+++|++|++++|.. ....+.+ +..+++|++|++++
T Consensus 112 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~---~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 112 LDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERA---FRGLHSLDRLLLHQ 186 (285)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTT---TTTCTTCCEEECCS
T ss_pred CCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHH---hcCccccCEEECCC
Confidence 77754 4333 45567777788888777 66666543 3467788888877763 2222222 56677888888888
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
|. +..+.... +..+++|++|++++ +.++.++ ..+..+++|++|++++++
T Consensus 187 n~----l~~~~~~~------~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 187 NR----VAHVHPHA------FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SC----CCEECTTT------TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred Cc----ccccCHhH------ccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 73 44442221 23456788888888 5777766 446778888888888754
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=7.4e-17 Score=157.28 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=41.0
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc--ccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP--SGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 366 (551)
|++|++++|.. ..++..+..+++|++|++++ +.+..++ ..+..+++|++|++++|......+.....+++|++|++
T Consensus 80 L~~L~Ls~n~i-~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 80 LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCEEECCSCSE-EEEEEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCcc-ccChhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 44444444432 22333344444455554444 2333332 23344444555554443222222222223334455554
Q ss_pred ccCcccc-ccccccccCCcccceeccc
Q 008856 367 YDCKRLK-ALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 367 ~~c~~l~-~~~~~~~~l~~L~~L~l~~ 392 (551)
+++.... .+|..+..+++|+.|++++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred CCCccccccchhHHhhCcCCCEEECCC
Confidence 4432111 1344444444455554444
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=4.4e-17 Score=159.67 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=83.5
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
|++|++++|......+ +..+++|++|++++ +.+..++ ..++|++|++++| .+..++... +++|+.|++++
T Consensus 60 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~-n~l~~l~----~~~~L~~L~l~~n-~l~~~~~~~--~~~L~~L~l~~ 129 (317)
T 3o53_A 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNN-NYVQELL----VGPSIETLHAANN-NISRVSCSR--GQGKKNIYLAN 129 (317)
T ss_dssp CCEEECTTSCCEEEEE--ETTCTTCCEEECCS-SEEEEEE----ECTTCCEEECCSS-CCSEEEECC--CSSCEEEECCS
T ss_pred CCEEECCCCcCCcchh--hhhcCCCCEEECcC-Ccccccc----CCCCcCEEECCCC-ccCCcCccc--cCCCCEEECCC
Confidence 5555555554322221 45555555555555 3343332 2255555555553 333332222 23555555555
Q ss_pred Ccccccc-ccccccCCcccceeccc-cccccccC---CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 369 CKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED---GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 369 c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
+ .++.+ +..+..+++|+.|++++ .+..++.. ..+++|++|++++|.... . +. ...+++|++|++++|.
T Consensus 130 N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~-~~----~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 130 N-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-V-KG----QVVFAKLKTLDLSSNK 202 (317)
T ss_dssp S-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-E-EC----CCCCTTCCEEECCSSC
T ss_pred C-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-c-cc----ccccccCCEEECCCCc
Confidence 3 23333 22444555555555555 44333221 123555555555555221 1 11 2234555555555552
Q ss_pred CCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCC
Q 008856 444 DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 500 (551)
+..++... ..+++|++|++++ +.++.+|..+..+++|++|++++|
T Consensus 203 ----l~~l~~~~-------~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 203 ----LAFMGPEF-------QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp ----CCEECGGG-------GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTC
T ss_pred ----CCcchhhh-------cccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCC
Confidence 44444322 2344555555555 455555544555555555555553
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.2e-16 Score=165.83 Aligned_cols=244 Identities=14% Similarity=0.106 Sum_probs=147.7
Q ss_pred hhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhcc
Q 008856 113 QQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDT 192 (551)
Q Consensus 113 ~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (551)
+..+...+++|++|+|++|..-...|..+..+++|++|++++| .++..+++..+++|++|++++|. +..++..
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~----- 98 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG----- 98 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEEC-----
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCCC-----
Confidence 3333333357777777775332233456667777777777764 45544446667777777777753 4444432
Q ss_pred CCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCC
Q 008856 193 NSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNE 272 (551)
Q Consensus 193 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 272 (551)
++|+.|++++|. ++.++.. .+++|+.|+++++ .++.+ .|..+.. +++|++|++++ +.++. .+...
T Consensus 99 -~~L~~L~L~~N~-l~~~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~--------l~~L~~L~Ls~-N~l~~-~~~~~ 163 (487)
T 3oja_A 99 -PSIETLHAANNN-ISRVSCS-RGQGKKNIYLANN-KITML-RDLDEGC--------RSRVQYLDLKL-NEIDT-VNFAE 163 (487)
T ss_dssp -TTCCEEECCSSC-CCCEEEC-CCSSCEEEECCSS-CCCSG-GGBCGGG--------GSSEEEEECTT-SCCCE-EEGGG
T ss_pred -CCcCEEECcCCc-CCCCCcc-ccCCCCEEECCCC-CCCCC-CchhhcC--------CCCCCEEECCC-CCCCC-cChHH
Confidence 567777777643 3343332 3467788887774 34433 0334444 55688888777 34443 22111
Q ss_pred chhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCC
Q 008856 273 LPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFP 352 (551)
Q Consensus 273 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 352 (551)
+.. .+ ++|++|++++|..... + ....+++|+.|++++ +.+..+|..+..+++|+.|++++ +.+..+|
T Consensus 164 l~~---~l------~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp 230 (487)
T 3oja_A 164 LAA---SS------DTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIE 230 (487)
T ss_dssp GGG---GT------TTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEEC
T ss_pred Hhh---hC------CcccEEecCCCccccc-c-ccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccc
Confidence 110 11 1488888888864332 2 234578888888888 56777766677788888888888 4566677
Q ss_pred CCCCCCCCccEEEEccCccc-cccccccccCCcccceecc
Q 008856 353 GGGLPCAKLTALEIYDCKRL-KALPKGLHNLSTLQDLTIG 391 (551)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~l~~L~~L~l~ 391 (551)
.....+++|+.|++++|+.. ..+|.++..+++|+.+++.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66556668888888885533 2556666777777777765
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=9.6e-17 Score=150.49 Aligned_cols=200 Identities=16% Similarity=0.090 Sum_probs=127.3
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|+++++..++.++. .+..+++|++|++++|+.++.++. ....+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 577777777654333334566667777777776333555532 455566666666666445554443 222334555555
Q ss_pred EccCccccccccccccCCcccceeccccccccccCCcCCCcc---eeEecCCchhhhhhhhhccccccCCCcc-EEEEec
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLH---SLVIRGNMEIWKSMIEWGRGFHRFSSLR-HLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~~l~~l~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~ 441 (551)
++++ .+..+|....+++|+ +|++++|+.+....+.. +..+++|+ +|++++
T Consensus 112 l~~n-----------------------~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNT-----------------------GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA---FQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEE-----------------------CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTT---TTTTBSSEEEEECCS
T ss_pred CCCC-----------------------CCccccccccccccccccEEECCCCcchhhcCccc---ccchhcceeEEEcCC
Confidence 5552 333333333334444 88888884454443333 67888999 999998
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCC-CCcCEEEEcCCCCccccCCCCCccccceEe
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDL-RNLTELVLRGCPKLKYFPEKGLPSSLLELW 519 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 519 (551)
|. +..+|... +.. ++|++|+++++..++.++ ..+..+ ++|++|++++ ++++.+|.. .+++|+.|.
T Consensus 166 n~----l~~i~~~~------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~ 232 (239)
T 2xwt_C 166 NG----FTSVQGYA------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELI 232 (239)
T ss_dssp CC----CCEECTTT------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEE
T ss_pred CC----CcccCHhh------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceee
Confidence 83 77777644 223 689999999943588886 557778 9999999999 678888876 567999999
Q ss_pred ecCCchH
Q 008856 520 ISGCPLI 526 (551)
Q Consensus 520 i~~c~~l 526 (551)
+.+++.+
T Consensus 233 l~~~~~l 239 (239)
T 2xwt_C 233 ARNTWTL 239 (239)
T ss_dssp CTTC---
T ss_pred ccCccCC
Confidence 9988753
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=1.9e-16 Score=152.76 Aligned_cols=171 Identities=24% Similarity=0.308 Sum_probs=76.0
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l 366 (551)
|++|++++|......+..+..+++|++|+++++..+..+ +..+..+++|++|++++| .+..+ +.....+++|++|++
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEEC
Confidence 444444444332222334444555555555553224443 334444555555555553 22222 222223345555555
Q ss_pred ccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 367 YDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 367 ~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+++ .++.++ ..+.++++|+.|++++ .+..++.. ..+++|++|++++|.... ..+.+ +..+++|+.|++++|
T Consensus 137 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~---~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 137 QDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHA---FRDLGRLMTLYLFAN 211 (285)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTT---TTTCTTCCEEECCSS
T ss_pred CCC-cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc-cCHhH---ccCcccccEeeCCCC
Confidence 542 233333 2244555555555555 44444432 234555555555555221 21221 445555666666555
Q ss_pred CCCCccccccccccccccccccccccccccccc
Q 008856 443 DDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
. +..++... +..+++|+.|++++
T Consensus 212 ~----l~~~~~~~------~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 212 N----LSALPTEA------LAPLRALQYLRLND 234 (285)
T ss_dssp C----CSCCCHHH------HTTCTTCCEEECCS
T ss_pred c----CCcCCHHH------cccCcccCEEeccC
Confidence 2 44444321 12345555666555
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.3e-16 Score=163.68 Aligned_cols=184 Identities=15% Similarity=0.106 Sum_probs=83.9
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
|++|++++|......+ +..+++|++|++++ +.+..++. .++|++|++++| .+..++... +++|+.|++++
T Consensus 60 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~-N~l~~l~~----~~~L~~L~L~~N-~l~~~~~~~--l~~L~~L~L~~ 129 (487)
T 3oja_A 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNN-NYVQELLV----GPSIETLHAANN-NISRVSCSR--GQGKKNIYLAN 129 (487)
T ss_dssp CCEEECTTSCCEEEEE--CTTCTTCCEEECCS-SEEEEEEE----CTTCCEEECCSS-CCCCEEECC--CSSCEEEECCS
T ss_pred CCEEEeeCCCCCCCcc--cccCCCCCEEEecC-CcCCCCCC----CCCcCEEECcCC-cCCCCCccc--cCCCCEEECCC
Confidence 5556665554322222 55555555555555 33443321 255555555553 333332221 23555555555
Q ss_pred CccccccccccccCCcccceeccc-cccccccC---CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCC
Q 008856 369 CKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED---GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDD 444 (551)
Q Consensus 369 c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 444 (551)
|..-...|..+.++++|+.|++++ .+..++.. ..+++|++|++++|.... . +. ...+++|+.|++++|.
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~-~~----~~~l~~L~~L~Ls~N~- 202 (487)
T 3oja_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-V-KG----QVVFAKLKTLDLSSNK- 202 (487)
T ss_dssp SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-E-EC----CCCCTTCCEEECCSSC-
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-c-cc----cccCCCCCEEECCCCC-
Confidence 332222233445555555555555 33332211 124555555555555221 1 11 2234555555555552
Q ss_pred CCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCC
Q 008856 445 DTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 500 (551)
+..+|... ..+++|+.|++++ +.+..+|..+..+++|+.|++++|
T Consensus 203 ---l~~~~~~~-------~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 203 ---LAFMGPEF-------QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp ---CCEECGGG-------GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTC
T ss_pred ---CCCCCHhH-------cCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCC
Confidence 44444322 1344555555555 455555544455555555555553
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=1.1e-17 Score=163.64 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=113.9
Q ss_pred CCCCCcEEEEecCCCcc-cccccc--cCCCCcceEEecCCCCCccCCCCCCC-----CCCccEEEEccCccccccc-ccc
Q 008856 309 NNTSLETISIYNCENLK-ILPSGL--HKLHQLREISIGSCGNLVSFPGGGLP-----CAKLTALEIYDCKRLKALP-KGL 379 (551)
Q Consensus 309 ~l~~L~~L~l~~~~~l~-~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~-----~~~L~~L~l~~c~~l~~~~-~~~ 379 (551)
.+++|++|+++++ .+. .+|..+ ..+++|++|++++| .+..+|..... +++|++|+++++. ++.++ ..+
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence 4566666666663 333 345444 55666666666663 33333321111 1467777776643 44443 556
Q ss_pred ccCCcccceeccc-cccc----cccC--CcCCCcceeEecCCchhh--hhhhhhccccccCCCccEEEEeccCCCCcccc
Q 008856 380 HNLSTLQDLTIGG-ALLS----LEED--GLPTNLHSLVIRGNMEIW--KSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVS 450 (551)
Q Consensus 380 ~~l~~L~~L~l~~-~l~~----l~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 450 (551)
.++++|+.|++++ .+.. .+.. ..+++|++|++++|.... ...... +..+++|++|++++|. +..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~N~----l~~ 242 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL---AAARVQLQGLDLSHNS----LRD 242 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH---HHTTCCCSEEECTTSC----CCS
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH---HhcCCCCCEEECCCCc----CCc
Confidence 6777777777766 3221 1122 346777777777776331 111111 4566788888888773 444
Q ss_pred cc-cccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCc
Q 008856 451 FP-LEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 451 ~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
.+ ... +..+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|.-..+++|++|++++++
T Consensus 243 ~~~~~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 243 AAGAPS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCSC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred ccchhh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 33 111 12457788888887 67777775554 7788888887 467776654446778888887764
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1.2e-15 Score=142.94 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=97.5
Q ss_pred CccEEEeccCcchhhh-HhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCCCCCCCCCcc---
Q 008856 288 SLKSLRVRYCSKLESI-AERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLT--- 362 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~--- 362 (551)
+|++|++++|..++.+ +..+..+++|++|++++|+.++.++ ..+..+++|++|++++| .++.+|. ...+++|+
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~ 133 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFF 133 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEE
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-ccccccccccc
Confidence 3777788777533333 3467788889999998867777774 45677888999999884 5666765 44455777
Q ss_pred EEEEccCcccccccc-ccccCCccc-ceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccC-CCccEE
Q 008856 363 ALEIYDCKRLKALPK-GLHNLSTLQ-DLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRF-SSLRHL 437 (551)
Q Consensus 363 ~L~l~~c~~l~~~~~-~~~~l~~L~-~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L 437 (551)
.|++++++.++.++. .+.++++|+ .|++++ .+..++.. ...++|++|++++|+.+....+.. +..+ ++|+.|
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~---~~~l~~~L~~L 210 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA---FGGVYSGPSLL 210 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTT---TTTCSBCCSEE
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH---hhccccCCcEE
Confidence 899988657777764 367788888 888877 66666553 122466666666664333222222 3444 555555
Q ss_pred EEecc
Q 008856 438 TIDGC 442 (551)
Q Consensus 438 ~l~~~ 442 (551)
++++|
T Consensus 211 ~l~~N 215 (239)
T 2xwt_C 211 DVSQT 215 (239)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 55554
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=6.2e-15 Score=146.38 Aligned_cols=218 Identities=20% Similarity=0.233 Sum_probs=152.5
Q ss_pred CccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhH-hhhcCCCCCcEEEEecCCCcccc-cc
Q 008856 252 LLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIA-ERLDNNTSLETISIYNCENLKIL-PS 329 (551)
Q Consensus 252 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~-~~ 329 (551)
++++|++++ +.++. ++.+.|.. + ++|++|++++|...+.++ ..|.+++++..+.+.+++.+..+ +.
T Consensus 31 ~l~~L~Ls~-N~i~~-i~~~~f~~----l------~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 31 NAIELRFVL-TKLRV-IQKGAFSG----F------GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCSEEEEES-CCCSE-ECTTSSTT----C------TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCEEEccC-CcCCC-cCHHHHcC----C------CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 566666666 45555 43322211 1 137888888776655443 35677888777666665778777 55
Q ss_pred cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEccCcccccccc-ccccC-Ccccceeccc-cccccccC-CcCC
Q 008856 330 GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALPK-GLHNL-STLQDLTIGG-ALLSLEED-GLPT 404 (551)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~-~~~~l-~~L~~L~l~~-~l~~l~~~-~~~~ 404 (551)
.+..+++|++|++++| .+..++. ......++..+++.+++.++.++. .+..+ ..++.|++++ .++.++.. ....
T Consensus 99 ~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177 (350)
T ss_dssp SBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred hhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence 6777888999988884 5555554 233334677888888777877764 34444 4578888888 78877765 3456
Q ss_pred CcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhh
Q 008856 405 NLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS 484 (551)
Q Consensus 405 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 484 (551)
+|+++++.++..+..+.... +..+++|++|++++|. +..+|... +.+|+.|++.++++++.+|
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~---f~~l~~L~~LdLs~N~----l~~lp~~~---------~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDV---FHGASGPVILDISRTR----IHSLPSYG---------LENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTT---TTTEECCSEEECTTSC----CCCCCSSS---------CTTCCEEECTTCTTCCCCC-
T ss_pred chhHHhhccCCcccCCCHHH---hccCcccchhhcCCCC----cCccChhh---------hccchHhhhccCCCcCcCC-
Confidence 88899998777676555443 6788999999999984 88888743 4678888888888888888
Q ss_pred hccCCCCcCEEEEcC
Q 008856 485 SIIDLRNLTELVLRG 499 (551)
Q Consensus 485 ~~~~l~~L~~L~l~~ 499 (551)
.+.+|++|+.+++.+
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 577899999999865
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=4.6e-16 Score=152.02 Aligned_cols=247 Identities=18% Similarity=0.164 Sum_probs=173.4
Q ss_pred CCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhh--hccccCCCCCccEEEe
Q 008856 217 SSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLE--SLEVGNLPPSLKSLRV 294 (551)
Q Consensus 217 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~--~l~~~~~~~~L~~L~l 294 (551)
++|+.++++++. + .+ |..+.. .++.|++++ +.++. . .+|..+. .+...+ .++|++|++
T Consensus 43 ~~L~~l~l~~n~-l-~~--p~~~~~----------~L~~L~L~~-n~l~~-~---~~~~~~~~~~~~~~~-l~~L~~L~L 102 (312)
T 1wwl_A 43 RSLEYLLKRVDT-E-AD--LGQFTD----------IIKSLSLKR-LTVRA-A---RIPSRILFGALRVLG-ISGLQELTL 102 (312)
T ss_dssp EECTTHHHHCCT-T-CC--CHHHHH----------HHHHCCCCE-EEEEE-E---ECBHHHHHHHHHHHT-TSCCCEEEE
T ss_pred CCceeEeecccc-c-cc--HHHHHH----------HHhhccccc-ccccC-C---CcCHHHHHHHHHhcC-cCCccEEEc
Confidence 456777777643 3 44 776665 489998888 33332 1 1222111 000001 126999999
Q ss_pred ccCcchhhhHhhh--cCCCCCcEEEEecCCCcccccccccCC-----CCcceEEecCCCCCccCC-CCCCCCCCccEEEE
Q 008856 295 RYCSKLESIAERL--DNNTSLETISIYNCENLKILPSGLHKL-----HQLREISIGSCGNLVSFP-GGGLPCAKLTALEI 366 (551)
Q Consensus 295 ~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l 366 (551)
++|.....++..+ ..+++|++|++++ +.+..+|..+..+ ++|++|++++| .+..++ .....+++|++|++
T Consensus 103 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 103 ENLEVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp EEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEEC
T ss_pred cCCcccchhHHHHHHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEEC
Confidence 9997666666655 8899999999999 5676666666655 89999999995 455555 45556779999999
Q ss_pred ccCccccc--ccccc--ccCCcccceeccc-ccccccc---C--CcCCCcceeEecCCchhhhhhhhhccccccCCCccE
Q 008856 367 YDCKRLKA--LPKGL--HNLSTLQDLTIGG-ALLSLEE---D--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRH 436 (551)
Q Consensus 367 ~~c~~l~~--~~~~~--~~l~~L~~L~l~~-~l~~l~~---~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 436 (551)
++|..... ++..+ .++++|+.|++++ .+..++. . ..+++|++|++++|.......... +..+++|++
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~ 257 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS---CDWPSQLNS 257 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC---CCCCTTCCE
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh---hhhcCCCCE
Confidence 99754333 23334 7899999999999 6664432 1 245899999999998443221111 456789999
Q ss_pred EEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCcc
Q 008856 437 LTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLK 504 (551)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 504 (551)
|++++|. +..+|... . ++|++|++++ +.++.+|. +..+++|++|+++++ .++
T Consensus 258 L~Ls~N~----l~~ip~~~--------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 258 LNLSFTG----LKQVPKGL--------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN-PFL 309 (312)
T ss_dssp EECTTSC----CSSCCSSC--------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTC-TTT
T ss_pred EECCCCc----cChhhhhc--------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCC-CCC
Confidence 9999994 77888755 3 7999999999 79998876 788999999999995 444
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=1.1e-14 Score=140.47 Aligned_cols=192 Identities=19% Similarity=0.160 Sum_probs=136.8
Q ss_pred cCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc
Q 008856 250 SYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS 329 (551)
Q Consensus 250 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 329 (551)
+++++++++++ +.++. +|....+ +++.|++++|......+..+..+++|+.|++++ +.+..++.
T Consensus 9 l~~l~~l~~~~-~~l~~-ip~~~~~-------------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~ 72 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTA-LPPDLPK-------------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV 72 (290)
T ss_dssp STTCCEEECTT-SCCSS-CCSCCCT-------------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC
T ss_pred cCCccEEECCC-CCCCc-CCCCCCC-------------CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccC
Confidence 34577777766 45555 4433222 588999998876555567788899999999998 66777754
Q ss_pred cccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccc-cccccCCcccceeccc-cccccccC--CcCCC
Q 008856 330 GLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTN 405 (551)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~ 405 (551)
. ..+++|++|++++ +.+..+|.....+++|+.|++++ ++++.++ ..+.++++|+.|++++ .+..++.. ..+++
T Consensus 73 ~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp C-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred C-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 3 6788999999998 46777777666677899999988 4566665 5578888888888888 77777664 34678
Q ss_pred cceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccccccccccc
Q 008856 406 LHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 406 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
|++|++++|+. ....+.. +..+++|+.|++++|. +..+|... ...++|+.+++++
T Consensus 150 L~~L~L~~N~l-~~l~~~~---~~~l~~L~~L~L~~N~----l~~ip~~~-------~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 150 LEKLSLANNNL-TELPAGL---LNGLENLDTLLLQENS----LYTIPKGF-------FGSHLLPFAFLHG 204 (290)
T ss_dssp CCEEECTTSCC-SCCCTTT---TTTCTTCCEEECCSSC----CCCCCTTT-------TTTCCCSEEECCS
T ss_pred CCEEECCCCcC-CccCHHH---hcCcCCCCEEECCCCc----CCccChhh-------cccccCCeEEeCC
Confidence 88888888873 3333222 5677888888888873 66777654 1345778888876
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=4.3e-15 Score=143.26 Aligned_cols=192 Identities=17% Similarity=0.191 Sum_probs=141.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEI 366 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 366 (551)
++++++++++. ++.++..+ .++++.|++++ +.+..+ +..+..+++|++|++++| .++.++.. ..+++|+.|++
T Consensus 11 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCDKRN-LTALPPDL--PKDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTTSC-CSSCCSCC--CTTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred CccEEECCCCC-CCcCCCCC--CCCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence 58899998874 44454433 36899999998 556666 567888999999999984 56666554 45568999999
Q ss_pred ccCccccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 367 YDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 367 ~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
++ +.++.+|..+..+++|+.|++++ .+..++.. ..+++|++|++++|... ...+.. +..+++|+.|++++|.
T Consensus 85 s~-N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 85 SH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGL---LTPTPKLEKLSLANNN 159 (290)
T ss_dssp CS-SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTT---TTTCTTCCEEECTTSC
T ss_pred CC-CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhh---cccccCCCEEECCCCc
Confidence 98 56778888888888999999988 77777653 45678888888888733 232222 5677888888888873
Q ss_pred CCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 444 DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
+..++... +..+++|+.|++++ +.++.+|.++...++|+++++++++
T Consensus 160 ----l~~l~~~~------~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 ----LTELPAGL------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ----CSCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ----CCccCHHH------hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 66776643 23467888888888 6788888777777788888888755
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=3.9e-15 Score=142.73 Aligned_cols=195 Identities=17% Similarity=0.176 Sum_probs=132.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCC-CCCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFP-GGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|++++ +.+..+ +..+..+++|++|++++| .+..++ .....+++|+.|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCC-CcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 689999988865554455788889999999988 456666 346778889999999885 444444 3445567888888
Q ss_pred EccCcccccccc-ccccCCcccceeccc-cccc--cccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCcc----E
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG-ALLS--LEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLR----H 436 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~----~ 436 (551)
++++. ++.++. .+.++++|+.|++++ .+.. ++.. ..+++|++|++++|.... ..+.. +..+++|+ .
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~l~l~ 181 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTD---LRVLHQMPLLNLS 181 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGG---GHHHHTCTTCCEE
T ss_pred CCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHH---hhhhhhcccccee
Confidence 88854 444443 577888888888887 5555 3332 456788888888887332 22222 33444444 7
Q ss_pred EEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhh-hccCCCCcCEEEEcCCC
Q 008856 437 LTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS-SIIDLRNLTELVLRGCP 501 (551)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~ 501 (551)
|++++|. +..++... + ...+|++|++++ +.++.+|. .+..+++|++|++++++
T Consensus 182 L~ls~n~----l~~~~~~~------~-~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLNP----MNFIQPGA------F-KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSC----CCEECTTS------S-CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCCCc----ccccCccc------c-CCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 8888873 66665533 1 233788888888 57777764 35678888888888744
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.1e-14 Score=137.03 Aligned_cols=193 Identities=23% Similarity=0.334 Sum_probs=122.5
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCCCC-CCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPGGG-LPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~ 365 (551)
+.+.++++++. ++.++..+ .+++++|++++ +.+..++ ..+..+++|++|++++| .++.++... ..+++|++|+
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNI--PADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCC--CTTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCC-CCccCCCC--CCCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 36778877764 33444323 25788888888 5566664 36777888888888884 555665533 4456888888
Q ss_pred EccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
++++ .++.++ ..+..+++|+.|++++ .+..++.. ..+++|++|++++|... ...+.. +..+++|++|++++
T Consensus 92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~---~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV---FDKLTSLKELRLYN 166 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT---TTTCTTCCEEECCS
T ss_pred CCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhH---ccCCcccceeEecC
Confidence 8874 455554 3456777888888877 66666543 34677777777777632 222221 55677777777777
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChhhhhh-hccCCCCcCEEEEcCCC
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS-SIIDLRNLTELVLRGCP 501 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~ 501 (551)
|. +..++... +..+++|++|++++ +.++.+|. .+..+++|++|++++++
T Consensus 167 n~----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 NQ----LKRVPEGA------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SC----CSCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc----CcEeChhH------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 63 55555432 22456777777777 56666653 35567777777777654
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=2e-14 Score=137.80 Aligned_cols=194 Identities=22% Similarity=0.310 Sum_probs=149.1
Q ss_pred CCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEccCccccccc-cccccCCcccc
Q 008856 311 TSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALP-KGLHNLSTLQD 387 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~ 387 (551)
++|++|++++ +.+..++ ..+..+++|++|++++| .+..++. ....+++|+.|+++++. ++.++ ..+.++++|+.
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCC-CcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence 5799999999 6677774 47888999999999996 5666554 45556799999999954 55554 67899999999
Q ss_pred eeccc-ccccccc--CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccc
Q 008856 388 LTIGG-ALLSLEE--DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRL 464 (551)
Q Consensus 388 L~l~~-~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
|++++ .+..++. ...+++|++|++++|.......+.+ +..+++|++|++++|. +..++... +..
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~---~~~l~~L~~L~Ls~N~----l~~~~~~~------~~~ 171 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSSNK----IQSIYCTD------LRV 171 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG---GGGCTTCCEEECCSSC----CCEECGGG------GHH
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchh---hccCCCCCEEECCCCC----CCcCCHHH------hhh
Confidence 99999 7776665 3567999999999998443222333 7789999999999994 66665432 123
Q ss_pred ccccc----ccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC--CccccceEeecC
Q 008856 465 PTTLT----SLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSSLLELWISG 522 (551)
Q Consensus 465 ~~~L~----~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~ 522 (551)
+++|+ +|++++ +.++.++.......+|++|++++| +++.++... ..++|++|++++
T Consensus 172 l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 172 LHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp HHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred hhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence 45666 788998 788888866666679999999995 588887753 368999999994
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=8e-15 Score=142.77 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=151.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|++|++++|.. ..++ .+..+++|+.|++++ +.+..++. +..+++|++|++++| .++.++. ...+++|++|+++
T Consensus 42 ~L~~L~l~~~~i-~~l~-~~~~l~~L~~L~L~~-n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGV-TTIE-GVQYLNNLIGLELKD-NQITDLAP-LKNLTKITELELSGN-PLKNVSA-IAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCC-CCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG-GTTCTTCCEEECT
T ss_pred CcCEEEeeCCCc-cCch-hhhccCCCCEEEccC-CcCCCChh-HccCCCCCEEEccCC-cCCCchh-hcCCCCCCEEECC
Confidence 499999999854 3343 578899999999999 56777765 888999999999995 4666653 3445699999999
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+| .++.++. +..+++|+.|++++ .+..++....+++|++|++++|.... ..+ +..+++|++|++++|.
T Consensus 116 ~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~l~~n~--- 184 (308)
T 1h6u_A 116 ST-QITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTP-----LANLSKLTTLKADDNK--- 184 (308)
T ss_dssp TS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSC---
T ss_pred CC-CCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC-Chh-----hcCCCCCCEEECCCCc---
Confidence 95 4666654 88999999999999 77777776678999999999997432 221 6688999999999984
Q ss_pred cccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCC
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
+..++.- ..+++|++|++++ +.+..++ .+..+++|++|++++| .++..|.
T Consensus 185 -l~~~~~l--------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 185 -ISDISPL--------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp -CCCCGGG--------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred -cCcChhh--------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCC-eeecCCe
Confidence 6666542 2678999999999 6888887 4788999999999995 4666544
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=3.9e-14 Score=140.66 Aligned_cols=218 Identities=20% Similarity=0.166 Sum_probs=165.1
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
++++|++++|.........|.++++|++|+++++...+.++ ..+..+++++++...+++.+..++. ....+++|+.|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 69999999996544334578999999999999955456664 4567789988877777788888865 445677999999
Q ss_pred EccCcccccccc-ccccCCcccceeccc--cccccccCC---cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEE
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG--ALLSLEEDG---LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTI 439 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~--~l~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 439 (551)
+++ ++++.++. .+.+..++..|++.+ .+..++... ....++.|++++|.. ..+... .....+|+++++
T Consensus 111 l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~~~----~f~~~~L~~l~l 184 (350)
T 4ay9_X 111 ISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNS----AFNGTQLDELNL 184 (350)
T ss_dssp EEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTT----SSTTEEEEEEEC
T ss_pred ccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCChh----hccccchhHHhh
Confidence 998 45666654 345666777888866 677776542 235789999999984 323222 234568999999
Q ss_pred eccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEe
Q 008856 440 DGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELW 519 (551)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 519 (551)
.++ .. +..+|.+. |..+++|++|++++ ++++.+|. ..+.+|++|.+.+|++++.+|....+++|+.++
T Consensus 185 ~~~-n~--l~~i~~~~------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~ 252 (350)
T 4ay9_X 185 SDN-NN--LEELPNDV------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252 (350)
T ss_dssp TTC-TT--CCCCCTTT------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEE
T ss_pred ccC-Cc--ccCCCHHH------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCc
Confidence 875 25 78888754 45788999999999 79999984 348899999999999999999866678999999
Q ss_pred ecCC
Q 008856 520 ISGC 523 (551)
Q Consensus 520 i~~c 523 (551)
+...
T Consensus 253 l~~~ 256 (350)
T 4ay9_X 253 LTYP 256 (350)
T ss_dssp CSCH
T ss_pred CCCC
Confidence 8753
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=1.1e-14 Score=141.90 Aligned_cols=193 Identities=15% Similarity=0.155 Sum_probs=142.8
Q ss_pred cCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc
Q 008856 250 SYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS 329 (551)
Q Consensus 250 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 329 (551)
+++|++|++++| .++. ++. +..+. +|++|++++|.. ..++. +..+++|++|++++ +.+..++
T Consensus 40 l~~L~~L~l~~~-~i~~-l~~------~~~l~------~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~-n~l~~~~- 101 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTT-IEG------VQYLN------NLIGLELKDNQI-TDLAP-LKNLTKITELELSG-NPLKNVS- 101 (308)
T ss_dssp HHTCCEEECTTS-CCCC-CTT------GGGCT------TCCEEECCSSCC-CCCGG-GTTCCSCCEEECCS-CCCSCCG-
T ss_pred cCCcCEEEeeCC-CccC-chh------hhccC------CCCEEEccCCcC-CCChh-HccCCCCCEEEccC-CcCCCch-
Confidence 446999999885 4554 221 12211 599999999854 34444 88899999999999 5577764
Q ss_pred cccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcce
Q 008856 330 GLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHS 408 (551)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~ 408 (551)
.+..+++|++|++++| .++.++. ...+++|++|++++| .++.++. +..+++|+.|++++ .+..++....+++|++
T Consensus 102 ~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 177 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177 (308)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCE
Confidence 5788999999999995 5666654 445569999999985 5666655 78899999999998 7777776667889999
Q ss_pred eEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh
Q 008856 409 LVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS 483 (551)
Q Consensus 409 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 483 (551)
|++++|.... ..+ +..+++|++|++++|. +..++.- ..+++|+.|++++ +.+...|
T Consensus 178 L~l~~n~l~~-~~~-----l~~l~~L~~L~L~~N~----l~~~~~l--------~~l~~L~~L~l~~-N~i~~~~ 233 (308)
T 1h6u_A 178 LKADDNKISD-ISP-----LASLPNLIEVHLKNNQ----ISDVSPL--------ANTSNLFIVTLTN-QTITNQP 233 (308)
T ss_dssp EECCSSCCCC-CGG-----GGGCTTCCEEECTTSC----CCBCGGG--------TTCTTCCEEEEEE-EEEECCC
T ss_pred EECCCCccCc-Chh-----hcCCCCCCEEEccCCc----cCccccc--------cCCCCCCEEEccC-CeeecCC
Confidence 9999998432 221 5688999999999983 6666532 3678999999998 6776665
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=140.99 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=138.4
Q ss_pred ccEEEeccCcchhhh-Hh--hhcCCCCCcEEEEecCCCcccccccc--cCCCCcceEEecCCCCCccCCC----CCCCCC
Q 008856 289 LKSLRVRYCSKLESI-AE--RLDNNTSLETISIYNCENLKILPSGL--HKLHQLREISIGSCGNLVSFPG----GGLPCA 359 (551)
Q Consensus 289 L~~L~l~~~~~~~~~-~~--~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~----~~~~~~ 359 (551)
++.+.+.++...... .. .+..+++|++|++++|......|..+ ..+++|++|++++|..-...+. ....++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 566666655432211 11 12234668888888854333445555 6778888888888543322221 112355
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccc---cccC---CcCCCcceeEecCCchhhhhhhhhccccccCC
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLS---LEED---GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFS 432 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~---l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 432 (551)
+|++|++++|......+..+.++++|++|++++ .+.. ++.. ..+++|++|++++|..- .........+..++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCC
Confidence 888888887543333345677888888888887 4332 2221 35678889999888742 11111000145778
Q ss_pred CccEEEEeccCCCCccccc-ccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCC
Q 008856 433 SLRHLTIDGCDDDTMMVSF-PLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGL 511 (551)
Q Consensus 433 ~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 511 (551)
+|++|++++|. +... |.... ....+++|++|++++ +.++.+|..+ +++|++|++++ ++++.+|....
T Consensus 225 ~L~~L~Ls~N~----l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~-N~l~~~~~~~~ 292 (310)
T 4glp_A 225 QPHSLDLSHNS----LRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSS-NRLNRAPQPDE 292 (310)
T ss_dssp CCSSEECTTSC----CCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCS-CCCCSCCCTTS
T ss_pred CCCEEECCCCC----CCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCC-CcCCCCchhhh
Confidence 99999999883 5554 43321 111247899999988 7888888655 37899999998 56777766555
Q ss_pred ccccceEeecCCc
Q 008856 512 PSSLLELWISGCP 524 (551)
Q Consensus 512 ~~~L~~L~i~~c~ 524 (551)
+++|+.|++++++
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 6889999998875
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=8.2e-14 Score=132.95 Aligned_cols=170 Identities=21% Similarity=0.284 Sum_probs=83.0
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccccc-ccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 366 (551)
+++|++++|......+..+..+++|++|++++ +.+..++.. +..+++|++|++++| .+..++. ....+++|++|++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEEC
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEEC
Confidence 55555555543332233455555555555555 344444332 244555555555553 3334433 2233445555655
Q ss_pred ccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 367 YDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 367 ~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+++ .++.++ ..+.++++|+.|++++ .+..++.. ..+++|++|++++|.... ..+.. +..+++|++|++++|
T Consensus 117 ~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~---~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 117 DRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGA---FDKLTELKTLKLDNN 191 (270)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTT---TTTCTTCCEEECCSS
T ss_pred CCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-eChhH---hccCCCcCEEECCCC
Confidence 553 233333 2345556666666655 55554442 334566666666665222 22211 445566666666666
Q ss_pred CCCCccccccccccccccccccccccccccccc
Q 008856 443 DDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
. +..++... +..+++|+.|++++
T Consensus 192 ~----l~~~~~~~------~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 192 Q----LKRVPEGA------FDSLEKLKMLQLQE 214 (270)
T ss_dssp C----CSCCCTTT------TTTCTTCCEEECCS
T ss_pred c----CCcCCHHH------hccccCCCEEEecC
Confidence 2 44554432 12345666666665
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=9.7e-16 Score=151.44 Aligned_cols=57 Identities=21% Similarity=0.390 Sum_probs=27.1
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccc--ccccccCCCCcceEEecCC
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKI--LPSGLHKLHQLREISIGSC 345 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~ 345 (551)
|++|++++|......+..+..+++|++|++++|..++. ++..+..+++|++|++++|
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 55555555543334444444555555555555433332 2333444555555555554
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=140.75 Aligned_cols=195 Identities=18% Similarity=0.168 Sum_probs=104.9
Q ss_pred ccEEEeccCcchhhhHhhh--cCCCCCcEEEEecCCCcccc-c----ccccCCCCcceEEecCCCCCccCC-CCCCCCCC
Q 008856 289 LKSLRVRYCSKLESIAERL--DNNTSLETISIYNCENLKIL-P----SGLHKLHQLREISIGSCGNLVSFP-GGGLPCAK 360 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~-~----~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~ 360 (551)
|++|++++|......+..+ ..+++|++|+++++ .+... + ..+..+++|++|++++|. +..++ .....+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTT
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCC
Confidence 4444444444333333333 44455555555552 22221 1 112234555555555532 22222 22233445
Q ss_pred ccEEEEccCccccc--cc--cccccCCcccceeccc-cccccccC-----CcCCCcceeEecCCchhhhhhhhhcccccc
Q 008856 361 LTALEIYDCKRLKA--LP--KGLHNLSTLQDLTIGG-ALLSLEED-----GLPTNLHSLVIRGNMEIWKSMIEWGRGFHR 430 (551)
Q Consensus 361 L~~L~l~~c~~l~~--~~--~~~~~l~~L~~L~l~~-~l~~l~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 430 (551)
|++|++++|..... ++ ..+.++++|++|++++ .+..++.. ..+++|++|++++|.... ..+.....+..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccC
Confidence 55555555432211 11 1234566666666666 44444331 235677777777777333 22221101223
Q ss_pred CCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 431 FSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 431 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
+++|++|++++|. +..+|... +++|++|++++ |.++.+|. +..+++|++|++++++
T Consensus 250 ~~~L~~L~Ls~N~----l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAG----LEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSC----CCSCCSCC---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCC----CCchhhhh---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 4799999999884 77777644 37999999999 78888764 5778999999999954
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=1e-14 Score=144.01 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=26.9
Q ss_pred ccEEEeccCcc-hhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCC
Q 008856 289 LKSLRVRYCSK-LESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSC 345 (551)
Q Consensus 289 L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~ 345 (551)
|++|++++|.. ....+..+..+++|++|++++|..+... ...+..+++|++|++++|
T Consensus 224 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 55555555542 2233334455555555555554322211 123444555555555554
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=3.1e-14 Score=143.50 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=39.1
Q ss_pred ccEEEeccCcch----hhhHhhhcCCCCCcEEEEecCCCccc-----cccccc--CCCCcceEEecCCCCCcc-----CC
Q 008856 289 LKSLRVRYCSKL----ESIAERLDNNTSLETISIYNCENLKI-----LPSGLH--KLHQLREISIGSCGNLVS-----FP 352 (551)
Q Consensus 289 L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~--~~~~L~~L~l~~~~~l~~-----l~ 352 (551)
|++|++++|... ..++..+..+++|++|++++|. +.. ++..+. .+++|++|++++|. +.. ++
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~ 295 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLK 295 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHH
Confidence 556666555442 3344455556666666666632 332 133332 25666666666642 222 33
Q ss_pred CCC-CCCCCccEEEEccCc
Q 008856 353 GGG-LPCAKLTALEIYDCK 370 (551)
Q Consensus 353 ~~~-~~~~~L~~L~l~~c~ 370 (551)
... ..+++|+.|++++|.
T Consensus 296 ~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHCTTCCEEECTTSB
T ss_pred HHHHhcCCCceEEEccCCc
Confidence 222 223466666666643
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=5.7e-13 Score=127.24 Aligned_cols=145 Identities=26% Similarity=0.308 Sum_probs=71.4
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l 366 (551)
|++|++++|.... + ..+..+++|++|++++ +.+..++ ..+..+++|++|++++| .++.++.. ...+++|+.|++
T Consensus 65 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 65 VRYLALGGNKLHD-I-SALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CCEEECTTSCCCC-C-GGGTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEECCCCCCCC-c-hhhcCCCCCCEEECCC-CccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEEC
Confidence 5555555553222 1 2345555666666655 3344442 23455566666666653 33333332 233445666666
Q ss_pred ccCcccccccc-ccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 367 YDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 367 ~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++| .++.++. .+.++++|+.|++++ .+..++.. ..+++|++|++++|... ...+.. +..+++|+.|++++|
T Consensus 141 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 141 AHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGV---FDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTT---TTTCTTCCEEECCSS
T ss_pred CCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-ccCHHH---HhCCcCCCEEEccCC
Confidence 553 3444432 235555666666655 44444432 23456666666666522 222221 455666666666665
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=1.1e-14 Score=146.64 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=80.1
Q ss_pred CccEEEEccCccc-cccc---cccccCCcccceeccc-ccc------ccc-cCCcCCCcceeEecCCchhhhhhhhhccc
Q 008856 360 KLTALEIYDCKRL-KALP---KGLHNLSTLQDLTIGG-ALL------SLE-EDGLPTNLHSLVIRGNMEIWKSMIEWGRG 427 (551)
Q Consensus 360 ~L~~L~l~~c~~l-~~~~---~~~~~l~~L~~L~l~~-~l~------~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 427 (551)
+|++|++++|..- ..++ ..+..+++|+.|++++ .+. .++ ....+++|++|++++|.............
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 6666666664321 1222 3455667777777776 443 122 22456788888888888432111111111
Q ss_pred cccCCCccEEEEeccCCCCccccc-----ccccccccccccccccccccccccCCChhh-----hhhhc-cCCCCcCEEE
Q 008856 428 FHRFSSLRHLTIDGCDDDTMMVSF-----PLEDKRLGTVLRLPTTLTSLRIEDFPNLER-----LSSSI-IDLRNLTELV 496 (551)
Q Consensus 428 ~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~-~~l~~L~~L~ 496 (551)
+..+++|++|++++|. +... +.... ....++|++|++++ +.+.. +|..+ .++++|++|+
T Consensus 240 l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCL----LSARGAAAVVDAFS-----KLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp GGGCTTCCEEECTTCC----CCHHHHHHHHHHHH-----TCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HccCCCcCEEECCCCC----CchhhHHHHHHHHh-----hccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 6778888889888883 3332 22110 01257888889888 56665 77665 5689999999
Q ss_pred EcCCCCccc
Q 008856 497 LRGCPKLKY 505 (551)
Q Consensus 497 l~~c~~l~~ 505 (551)
+++|+ +..
T Consensus 310 l~~N~-l~~ 317 (386)
T 2ca6_A 310 LNGNR-FSE 317 (386)
T ss_dssp CTTSB-SCT
T ss_pred ccCCc-CCc
Confidence 99854 443
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=6.8e-13 Score=126.71 Aligned_cols=169 Identities=20% Similarity=0.288 Sum_probs=77.9
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEEEc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALEIY 367 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~ 367 (551)
|+.|+++++... .+ ..+..+++|++|++++ +.+..+ ..+..+++|++|++++| .++.++.. ...+++|++|+++
T Consensus 43 L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~-n~l~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 43 IDQIIANNSDIK-SV-QGIQYLPNVRYLALGG-NKLHDI-SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp CCEEECTTSCCC-CC-TTGGGCTTCCEEECTT-SCCCCC-GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred eeeeeeCCCCcc-cc-cccccCCCCcEEECCC-CCCCCc-hhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECC
Confidence 566666555322 21 1244555666666655 334443 24455555666666553 33333331 2333455555555
Q ss_pred cCcccccccc-ccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCC
Q 008856 368 DCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDD 445 (551)
Q Consensus 368 ~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 445 (551)
+|. ++.++. .+..+++|+.|++++ .+..++.. + +..+++|++|++++|.
T Consensus 118 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------------------~---~~~l~~L~~L~l~~n~-- 168 (272)
T 3rfs_A 118 ENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-----------------------V---FDKLTNLTELDLSYNQ-- 168 (272)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------------------T---TTTCTTCCEEECCSSC--
T ss_pred CCc-CCccCHHHhccCCCCCEEECCCCccCccCHH-----------------------H---hccCccCCEEECCCCC--
Confidence 532 333322 234445555555544 33333331 1 3344555555555552
Q ss_pred CcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCC
Q 008856 446 TMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGC 500 (551)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c 500 (551)
+..++... +..+++|++|++++ +.++.++ ..+..+++|++|++++|
T Consensus 169 --l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 169 --LQSLPEGV------FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp --CCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --cCccCHHH------hcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCC
Confidence 33333321 12344555555555 3444443 22445555666666554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=1e-12 Score=123.83 Aligned_cols=61 Identities=21% Similarity=0.367 Sum_probs=28.4
Q ss_pred ccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCC
Q 008856 429 HRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGC 500 (551)
Q Consensus 429 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c 500 (551)
..+++|++|++++|. +..++... +..+++|++|++++ +.++.++ ..+..+++|++|+++++
T Consensus 128 ~~l~~L~~L~Ls~N~----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 128 DRLTKLKELRLNTNQ----LQSIPAGA------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTCTTCCEEECCSSC----CCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCCcccEEECcCCc----CCccCHHH------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 344555555555542 44444321 12334555555555 4444444 23444555555555553
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=2e-13 Score=136.24 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=18.9
Q ss_pred CCccEEEecCCCCchhhcccCc----chhcccC-CccEEeecCCcccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHN----ELLQDIC-SLKRLTITSCPKLQSL 104 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~----~~~~~l~-~L~~L~l~~~~~l~~l 104 (551)
++|++|+++++ .++.. +. ..+..++ +|++|++++| .++..
T Consensus 22 ~~L~~L~Ls~n-~l~~~---~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 66 (362)
T 3goz_A 22 HGVTSLDLSLN-NLYSI---STVELIQAFANTPASVTSLNLSGN-SLGFK 66 (362)
T ss_dssp TTCCEEECTTS-CGGGS---CHHHHHHHHHTCCTTCCEEECCSS-CGGGS
T ss_pred CCceEEEccCC-CCChH---HHHHHHHHHHhCCCceeEEECcCC-CCCHH
Confidence 34555555552 34433 32 3334454 5555555554 34443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=7e-13 Score=127.85 Aligned_cols=164 Identities=19% Similarity=0.229 Sum_probs=86.5
Q ss_pred CCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceec
Q 008856 311 TSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTI 390 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l 390 (551)
++|+.|++++ +.+..++ .+..+++|++|++++| .++.++. ...+++|+.|++++| .++.++. +.++++|+.|++
T Consensus 46 ~~L~~L~l~~-~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred CcccEEEccC-CCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 3444444444 2333332 2344445555555442 3333322 222334555555542 2333332 555556666666
Q ss_pred cc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccccc
Q 008856 391 GG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLT 469 (551)
Q Consensus 391 ~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 469 (551)
++ .+..++....+++|++|++++|.... . +. +..+++|++|++++|. +..++. . ..+++|+
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~----l~~l~~L~~L~L~~N~----l~~~~~-l-------~~l~~L~ 181 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITD-I-TV----LSRLTKLDTLSLEDNQ----ISDIVP-L-------AGLTKLQ 181 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCC-C-GG----GGGCTTCSEEECCSSC----CCCCGG-G-------TTCTTCC
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCc-c-hh----hccCCCCCEEEccCCc----cccchh-h-------cCCCccC
Confidence 55 44444444455666666666665322 1 11 5567777777777763 444443 1 2456777
Q ss_pred ccccccCCChhhhhhhccCCCCcCEEEEcCC
Q 008856 470 SLRIEDFPNLERLSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 470 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 500 (551)
.|++++ +.++.++ .+..+++|+.|++++|
T Consensus 182 ~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 182 NLYLSK-NHISDLR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCS-SCCCBCG-GGTTCTTCSEEEEEEE
T ss_pred EEECCC-CcCCCCh-hhccCCCCCEEECcCC
Confidence 777777 5666665 3667777777777774
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=2.8e-12 Score=120.83 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=89.5
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+++.|++++|......+..+..+++|++|++++ +.+..+ +..+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCC-CcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence 477777777765444455566777777777777 445555 344566777777777773 4445443 233455777777
Q ss_pred EccCccccccccc-cccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKALPKG-LHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~~~-~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
++++ .++.++.. +.++++|+.|++++ .+..++.. ..+++|++|++++|... ...+.. +..+++|+.|++++
T Consensus 114 L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 114 LGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA---FDRLGKLQTITLFG 188 (251)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTT---TTTCTTCCEEECCS
T ss_pred cCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHH---HhCCCCCCEEEeeC
Confidence 7763 45555543 46667777777766 66655542 34566777777766632 222222 55667777777776
Q ss_pred c
Q 008856 442 C 442 (551)
Q Consensus 442 ~ 442 (551)
|
T Consensus 189 N 189 (251)
T 3m19_A 189 N 189 (251)
T ss_dssp C
T ss_pred C
Confidence 6
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.37 E-value=1.5e-12 Score=125.42 Aligned_cols=169 Identities=18% Similarity=0.148 Sum_probs=136.7
Q ss_pred ccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCccee
Q 008856 331 LHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSL 409 (551)
Q Consensus 331 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L 409 (551)
...+++|++|++++| .+..++. ...+++|+.|++++| .++.++. +.++++|+.|++++ .+..++....+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 356789999999995 6666654 344569999999995 5777766 89999999999999 88888877788999999
Q ss_pred EecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCC
Q 008856 410 VIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDL 489 (551)
Q Consensus 410 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l 489 (551)
++++|.... . +. +..+++|+.|++++|. +..++.- ..+++|++|++++ +.++.++. +..+
T Consensus 118 ~L~~n~i~~-~-~~----l~~l~~L~~L~l~~n~----l~~~~~l--------~~l~~L~~L~L~~-N~l~~~~~-l~~l 177 (291)
T 1h6t_A 118 SLEHNGISD-I-NG----LVHLPQLESLYLGNNK----ITDITVL--------SRLTKLDTLSLED-NQISDIVP-LAGL 177 (291)
T ss_dssp ECTTSCCCC-C-GG----GGGCTTCCEEECCSSC----CCCCGGG--------GGCTTCSEEECCS-SCCCCCGG-GTTC
T ss_pred ECCCCcCCC-C-hh----hcCCCCCCEEEccCCc----CCcchhh--------ccCCCCCEEEccC-Cccccchh-hcCC
Confidence 999998433 2 22 6789999999999994 6665432 3678999999999 68888875 8899
Q ss_pred CCcCEEEEcCCCCccccCCCCCccccceEeecCCc
Q 008856 490 RNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 490 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
++|++|++++| .++.++....+++|+.|++++|+
T Consensus 178 ~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 178 TKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 99999999995 68887665557899999999885
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=1.6e-13 Score=136.84 Aligned_cols=225 Identities=15% Similarity=0.111 Sum_probs=147.6
Q ss_pred CCCccEEEeccCcchhhhH----hhhcCCC-CCcEEEEecCCCcccc-cccccCC-----CCcceEEecCCCCCccCCCC
Q 008856 286 PPSLKSLRVRYCSKLESIA----ERLDNNT-SLETISIYNCENLKIL-PSGLHKL-----HQLREISIGSCGNLVSFPGG 354 (551)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~l~~~-~~~~~~~-----~~L~~L~l~~~~~l~~l~~~ 354 (551)
+.+|++|++++|......+ ..+..++ +|++|++++| .+... +..+..+ ++|++|++++|. +......
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 3469999999997554433 6778888 8999999995 56554 4444443 899999999964 4433211
Q ss_pred -----CCCC-CCccEEEEccCccccccc-cc----ccc-CCcccceeccc-cccc-----cccC-CcC-CCcceeEecCC
Q 008856 355 -----GLPC-AKLTALEIYDCKRLKALP-KG----LHN-LSTLQDLTIGG-ALLS-----LEED-GLP-TNLHSLVIRGN 414 (551)
Q Consensus 355 -----~~~~-~~L~~L~l~~c~~l~~~~-~~----~~~-l~~L~~L~l~~-~l~~-----l~~~-~~~-~~L~~L~l~~~ 414 (551)
.... ++|++|++++|. ++..+ .. +.. .++|++|++++ .+.. ++.. ... ++|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 1111 589999999965 44433 22 334 36999999998 5542 2221 123 49999999999
Q ss_pred chhhhhhhhhccccccC-CCccEEEEeccCCCCcccc-----cccccccccccccccccccccccccCCChhhh-----h
Q 008856 415 MEIWKSMIEWGRGFHRF-SSLRHLTIDGCDDDTMMVS-----FPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL-----S 483 (551)
Q Consensus 415 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~ 483 (551)
.............+..+ ++|++|++++|. +.. ++... ...+++|++|++++ +.+... .
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----i~~~~~~~l~~~l------~~~~~~L~~L~Ls~-N~l~~~~~~~l~ 246 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANL----LGLKSYAELAYIF------SSIPNHVVSLNLCL-NCLHGPSLENLK 246 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHH------HHSCTTCCEEECCS-SCCCCCCHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCC----CChhHHHHHHHHH------hcCCCCceEEECcC-CCCCcHHHHHHH
Confidence 85443322222224556 599999999994 554 33322 11246899999999 677654 3
Q ss_pred hhccCCCCcCEEEEcCCC-------CccccCC-CCCccccceEeecCCc
Q 008856 484 SSIIDLRNLTELVLRGCP-------KLKYFPE-KGLPSSLLELWISGCP 524 (551)
Q Consensus 484 ~~~~~l~~L~~L~l~~c~-------~l~~l~~-~~~~~~L~~L~i~~c~ 524 (551)
..+..+++|++|++++|. .+..++. ....++|++|++++++
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 445778999999999964 0222222 1235689999999986
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=7.1e-12 Score=131.22 Aligned_cols=131 Identities=24% Similarity=0.376 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccc
Q 008856 252 LLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGL 331 (551)
Q Consensus 252 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 331 (551)
+++.|++++ +.++. +|...++ +|++|++++|... .++ ..+++|++|++++ +.+..+|. +
T Consensus 60 ~L~~L~Ls~-n~L~~-lp~~l~~-------------~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~-N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNR-LNLSS-LPDNLPP-------------QITVLEITQNALI-SLP---ELPASLEYLDACD-NRLSTLPE-L 118 (571)
T ss_dssp TCSEEECCS-SCCSC-CCSCCCT-------------TCSEEECCSSCCS-CCC---CCCTTCCEEECCS-SCCSCCCC-C
T ss_pred CccEEEeCC-CCCCc-cCHhHcC-------------CCCEEECcCCCCc-ccc---cccCCCCEEEccC-CCCCCcch-h
Confidence 566666666 33444 3332222 3666666666432 333 3456666666666 44555544 3
Q ss_pred cCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeE
Q 008856 332 HKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLV 410 (551)
Q Consensus 332 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~ 410 (551)
.. +|++|++++| .++.+|. .+++|+.|++++ +.++.+|. .+++|+.|++++ .+..+|. ..++|++|+
T Consensus 119 ~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~~~L~~L~ 186 (571)
T 3cvr_A 119 PA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN-NQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LPESLEALD 186 (571)
T ss_dssp CT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEE
T ss_pred hc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC-CccCcCCC---cCCCcCEEECCCCCCCCcch--hhCCCCEEE
Confidence 32 6666666663 4444554 234666666665 33444544 345555555555 4444444 225555555
Q ss_pred ecCCc
Q 008856 411 IRGNM 415 (551)
Q Consensus 411 l~~~~ 415 (551)
+++|.
T Consensus 187 Ls~N~ 191 (571)
T 3cvr_A 187 VSTNL 191 (571)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 55554
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=8.7e-12 Score=130.55 Aligned_cols=181 Identities=21% Similarity=0.290 Sum_probs=129.2
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+++.|++++|.. ..++..+ +++|+.|++++ +.+..+| ..+++|++|++++| .++.+|. ... +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~-N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNL-SSLPDNL--PPQITVLEITQ-NALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCC-SCCCSCC--CTTCSEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCC-CccCHhH--cCCCCEEECcC-CCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 588999988854 3355433 37899999988 6677777 45788999999985 6666776 222 89999998
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+ +.++.+|. .+++|+.|++++ .+..+|. .+++|++|++++|.... + +. +. ++|+.|++++|.
T Consensus 129 ~-N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~-l-p~----l~--~~L~~L~Ls~N~--- 191 (571)
T 3cvr_A 129 N-NQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF-L-PE----LP--ESLEALDVSTNL--- 191 (571)
T ss_dssp S-SCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-C-CC----CC--TTCCEEECCSSC---
T ss_pred C-CcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC-c-ch----hh--CCCCEEECcCCC---
Confidence 8 45666776 678899999988 7777776 56889999999887322 2 11 22 789999999883
Q ss_pred cccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
+..+|. ... ..+..++.|+.|++++ |.++.+|..+..+++|++|++++|+
T Consensus 192 -L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 192 -LESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred -CCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 777776 310 0011112228899988 7888888777778999999999865
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=1e-11 Score=112.22 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=82.7
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+++|+.|++.++.... ++ ....+++|++|+++++ .++.+ ..+..+++|++|++++|. ++.....
T Consensus 43 l~~L~~L~l~~n~i~~----l~--~l~~l~~L~~L~l~~n-~~~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~--- 106 (197)
T 4ezg_A 43 MNSLTYITLANINVTD----LT--GIEYAHNIKDLTINNI-HATNY-----NPISGLSNLERLRIMGKD-VTSDKIP--- 106 (197)
T ss_dssp HHTCCEEEEESSCCSC----CT--TGGGCTTCSEEEEESC-CCSCC-----GGGTTCTTCCEEEEECTT-CBGGGSC---
T ss_pred cCCccEEeccCCCccC----hH--HHhcCCCCCEEEccCC-CCCcc-----hhhhcCCCCCEEEeECCc-cCcccCh---
Confidence 4555555555554331 22 1234566777777664 44432 235566677777777643 4432121
Q ss_pred hhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMC 190 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (551)
.+..+ ++|++|++++|......+..+..+++|++|++++|..++.++.+..+++|++|++++|. +..++..
T Consensus 107 -~l~~l----~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l--- 177 (197)
T 4ezg_A 107 -NLSGL----TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGI--- 177 (197)
T ss_dssp -CCTTC----TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTG---
T ss_pred -hhcCC----CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHh---
Confidence 14444 66777777665433334555666677777777765445666656666777777776654 4444322
Q ss_pred ccCCCccEEEEecC
Q 008856 191 DTNSSLEILSIHGC 204 (551)
Q Consensus 191 ~~~~~L~~L~l~~~ 204 (551)
..+++|+.|+++++
T Consensus 178 ~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGCSSCCEEEECBC
T ss_pred ccCCCCCEEEeeCc
Confidence 33466777777664
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=8.4e-12 Score=112.85 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=56.0
Q ss_pred hcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCccc
Q 008856 307 LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQ 386 (551)
Q Consensus 307 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 386 (551)
+..+++|++|++++| .+..+ ..+..+++|++|++++|.--...+.....+++|+.|++++|......+..+.++++|+
T Consensus 62 l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 333444444444442 23222 2333444444444444221111222222333444444444322222333444555555
Q ss_pred ceeccc-c-ccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 387 DLTIGG-A-LLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 387 ~L~l~~-~-l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
.|++++ . +..++....+++|++|++++|+... .. . +..+++|++|++++|
T Consensus 140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~----l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-G----IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-T----GGGCSSCCEEEECBC
T ss_pred EEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-H----hccCCCCCEEEeeCc
Confidence 555555 2 4444433445556666666655222 11 1 456666666666665
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=9.4e-12 Score=131.72 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=138.4
Q ss_pred hcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCccc
Q 008856 307 LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQ 386 (551)
Q Consensus 307 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 386 (551)
...+++|+.|++++ +.+..++ .+..+++|+.|++++| .+..++. ...+++|+.|++++| .++.++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCC
Confidence 34578899999998 5577775 5788999999999995 5655554 445669999999995 566665 688999999
Q ss_pred ceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccc
Q 008856 387 DLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLP 465 (551)
Q Consensus 387 ~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
.|++++ .+..++....+++|+.|+|++|.... . + .+..+++|+.|++++|. +..++.- ..+
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~----~l~~l~~L~~L~Ls~N~----l~~~~~l--------~~l 174 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITD-I-T----VLSRLTKLDTLSLEDNQ----ISDIVPL--------AGL 174 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCC-C-G----GGGSCTTCSEEECCSSC----CCCCGGG--------TTC
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCccCC-c-h----hhcccCCCCEEECcCCc----CCCchhh--------ccC
Confidence 999999 77777777778999999999998443 2 2 17789999999999993 5555542 267
Q ss_pred ccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCC
Q 008856 466 TTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 466 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
++|+.|++++ +.+..++ .+..+++|+.|++++|+ +...|.
T Consensus 175 ~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p~ 214 (605)
T 1m9s_A 175 TKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKPI 214 (605)
T ss_dssp TTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSEE-EECCCC
T ss_pred CCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCCc-CcCCcc
Confidence 8999999999 6888886 57889999999999954 555443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=6.5e-12 Score=132.96 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=133.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|+.|++++|.. ..++ .+..+++|+.|++++ +.+..++. +..+++|+.|++++| .+..++. ...+++|+.|+++
T Consensus 44 ~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNG-NKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS-LKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTT-SCCCCCGG-GGGCTTCCEEECCSS-CCCCCTT-STTCTTCCEEECT
T ss_pred CCCEEECcCCCC-CCCh-HHccCCCCCEEEeeC-CCCCCChh-hccCCCCCEEECcCC-CCCCChh-hccCCCCCEEEec
Confidence 499999998864 3333 578899999999999 56777754 888999999999995 6666663 4456699999999
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+| .+..++ .+..+++|+.|++++ .+..++....+++|++|+|++|.... ..+ +..+++|+.|++++|.
T Consensus 118 ~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-----l~~l~~L~~L~Ls~N~--- 186 (605)
T 1m9s_A 118 HN-GISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVP-----LAGLTKLQNLYLSKNH--- 186 (605)
T ss_dssp TS-CCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSC---
T ss_pred CC-CCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC-chh-----hccCCCCCEEECcCCC---
Confidence 95 466664 588999999999999 77777666778999999999998433 222 6689999999999994
Q ss_pred cccccccccccccccccccccccccccccCCChhhhh
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS 483 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 483 (551)
+..++.- ..+++|+.|++++ +.+...|
T Consensus 187 -i~~l~~l--------~~l~~L~~L~L~~-N~l~~~p 213 (605)
T 1m9s_A 187 -ISDLRAL--------AGLKNLDVLELFS-QECLNKP 213 (605)
T ss_dssp -CCBCGGG--------TTCTTCSEEECCS-EEEECCC
T ss_pred -CCCChHH--------ccCCCCCEEEccC-CcCcCCc
Confidence 6666542 2678999999999 5666554
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=4.9e-12 Score=119.94 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=60.4
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
+..++++++.. +.++ .+..+++|+.|++++ +.+..++ .+..+++|++|++++| .+..++. ...+++|+.|++++
T Consensus 21 l~~l~l~~~~i-~~~~-~~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSV-TDLV-SQKELSGVQNFNGDN-SNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCT-TSEE-CHHHHTTCSEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCc-cccc-chhhcCcCcEEECcC-CCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 55555555532 2222 345566777777777 4566654 4566677777777663 4444443 33344566666665
Q ss_pred CccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCc
Q 008856 369 CKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNM 415 (551)
Q Consensus 369 c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~ 415 (551)
| .++.++... . ++|+.|++++ .+..++....+++|++|++++|.
T Consensus 95 N-~l~~l~~~~-~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 95 N-RLKNLNGIP-S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp S-CCSCCTTCC-C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC
T ss_pred C-ccCCcCccc-c-CcccEEEccCCccCCChhhcCcccccEEECCCCc
Confidence 3 344443321 1 4555555554 44444333334444444444444
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=1.3e-10 Score=107.67 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=69.8
Q ss_pred ceEEeCCCCCcccccc-ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSA-TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
+.++.+++....++.. .++|+.|++.++.... ++...+..+++|++|++++ +.++.+ +...+..+++|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~-N~l~~i---~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGS-NQLGAL---PVGVFDSLTQLTVL 93 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCS-SCCCCC---CTTTTTTCTTCCEE
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCC-CCCCCc---ChhhcccCCCcCEE
Confidence 3444444433334433 3445555555544332 2222233455555555555 344444 44444555555555
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCc
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLK 171 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~ 171 (551)
+++++ .++.+++. .+..+ ++|++|++++| .+..+|..+..+++|++|++++ +.++.++. +..+++|+
T Consensus 94 ~Ls~N-~l~~l~~~----~~~~l----~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 94 DLGTN-QLTVLPSA----VFDRL----VHLKELFMCCN-KLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp ECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred ECCCC-cCCccChh----HhCcc----hhhCeEeccCC-cccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCC
Confidence 55553 35554442 12333 55555555553 3445555555555555555555 24444443 33455555
Q ss_pred EEEccCCC
Q 008856 172 KIQIGECD 179 (551)
Q Consensus 172 ~L~l~~~~ 179 (551)
.|++++|+
T Consensus 163 ~L~l~~N~ 170 (229)
T 3e6j_A 163 HAYLFGNP 170 (229)
T ss_dssp EEECTTSC
T ss_pred EEEeeCCC
Confidence 55555543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=1.1e-10 Score=108.14 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=97.4
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|++++ +.+..++ ..+..+++|++|++++| .++.++.. ...+++|+.|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 599999999876666677788899999999998 6677775 44578899999999984 66666653 34567899999
Q ss_pred EccCccccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCch
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNME 416 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~ 416 (551)
+++ +.++.+|..+.++++|+.|++++ .+..++.. ..+++|++|++++|+.
T Consensus 119 Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 119 MCC-NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCS-SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccC-CcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 988 56778888888888888888888 77766653 3467788888877773
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=2e-10 Score=105.62 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=69.4
Q ss_pred ceEEeCCCCCcccccc-ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSA-TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
+.++++++....++.. ...++.|++.++..... .+...+..+++|++|++++ +.++.+ +...+..+++|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~---~~~~~~~~l~~L~~L~L~~-N~i~~i---~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVL---EATGIFKKLPQLRKINFSN-NKITDI---EEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEE---CCCCCGGGCTTCCEEECCS-SCCCEE---CTTTTTTCTTCCEE
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCcc---CchhhhccCCCCCEEECCC-CcCCEE---CHHHhCCCCCCCEE
Confidence 3555555544444444 22345555555443221 1222233455555555555 344444 44445555555555
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCc
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLK 171 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~ 171 (551)
+++++ .++.+++. .+..+ ++|++|++++|..-...+..+..+++|++|++++ +.++.+++ +..+++|+
T Consensus 87 ~Ls~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 87 LLTSN-RLENVQHK----MFKGL----ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp ECCSS-CCCCCCGG----GGTTC----SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCC
T ss_pred ECCCC-ccCccCHh----HhcCC----cCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCC
Confidence 55553 35544442 23333 5555555555432222234455555555555555 23444422 33455555
Q ss_pred EEEccCCC
Q 008856 172 KIQIGECD 179 (551)
Q Consensus 172 ~L~l~~~~ 179 (551)
+|++++|.
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 55555543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=2.5e-10 Score=105.03 Aligned_cols=128 Identities=14% Similarity=0.206 Sum_probs=59.2
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+.+. ++..+ ++|++|+|++| .+..+|.
T Consensus 32 ~~l~~L~l~~-n~i~~i---~~~~~~~l~~L~~L~Ls~N-~i~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~l~~ 97 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKVI---PPGAFSPYKKLRRIDLSNN-QISELAPD----AFQGL----RSLNSLVLYGN-KITELPK 97 (220)
T ss_dssp TTCCEEECCS-SCCCEE---CTTSSTTCTTCCEEECCSS-CCCEECTT----TTTTC----SSCCEEECCSS-CCCCCCT
T ss_pred cCCCEEECCC-CcCCCc---CHhHhhCCCCCCEEECCCC-cCCCcCHH----HhhCC----cCCCEEECCCC-cCCccCH
Confidence 3455555555 344444 4444455555555555553 34444332 23434 55555555553 3344443
Q ss_pred c-cCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecC
Q 008856 140 S-SFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGC 204 (551)
Q Consensus 140 ~-~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 204 (551)
. +..+++|++|+++++ .++.+++ +..+++|++|++++|. +..++...+ ..+++|+.|+++++
T Consensus 98 ~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTF-SPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCSS
T ss_pred hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHH-hCCCCCCEEEeCCC
Confidence 2 344555555555552 3444432 3345555555555533 333332211 12245555555553
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.18 E-value=1.2e-10 Score=110.27 Aligned_cols=147 Identities=22% Similarity=0.307 Sum_probs=113.5
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|++|++++|.. ..++ .+..+++|+.|++++ +.+..++. +..+++|++|++++| .++.++.... ++|+.|+++
T Consensus 42 ~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCC-CCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEECC
T ss_pred cCcEEECcCCCc-ccch-HHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEcc
Confidence 488888888853 3444 577889999999988 56777755 788999999999994 6666765444 589999999
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+| .++.++ .+.++++|+.|++++ .+..++....+++|++|++++|+... . . .+..+++|+.|++++|.
T Consensus 115 ~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~-~--~---~l~~l~~L~~L~l~~N~--- 183 (263)
T 1xeu_A 115 NN-ELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN-T--G---GLTRLKKVNWIDLTGQK--- 183 (263)
T ss_dssp SS-CCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB-C--T---TSTTCCCCCEEEEEEEE---
T ss_pred CC-ccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc-h--H---HhccCCCCCEEeCCCCc---
Confidence 85 566665 588899999999999 77777766778999999999998443 2 1 27789999999999984
Q ss_pred ccccccc
Q 008856 447 MMVSFPL 453 (551)
Q Consensus 447 ~~~~~~~ 453 (551)
+...|.
T Consensus 184 -~~~~~~ 189 (263)
T 1xeu_A 184 -CVNEPV 189 (263)
T ss_dssp -EECCCE
T ss_pred -ccCCcc
Confidence 555443
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=5.6e-11 Score=118.28 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=81.0
Q ss_pred cEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-ccc-CCCCcceEEecCCCCCccCCC-CCCCCCCccEEEE
Q 008856 290 KSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLH-KLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEI 366 (551)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~-~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 366 (551)
+.++.+++. ++.++..+ .+.++.|++++ +.+..++. .+. .+++|++|++++| .+..++. ....+++|+.|++
T Consensus 21 ~~l~c~~~~-l~~iP~~~--~~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSL--PSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSC-CSSCCSSC--CTTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCC-cCccCccC--CCCCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 456665553 33343322 23567777777 55665533 333 6677777777773 4554443 3444556777777
Q ss_pred ccCcccccccc-ccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 367 YDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 367 ~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+++ .++.++. .+.++++|+.|++++ .+..++.. ..+++|++|++++|.... ........+..+++|+.|++++|
T Consensus 96 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 96 SSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSS
T ss_pred CCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCC
Confidence 763 3555543 456667777777766 55555432 335666666666665322 22211000134666666666666
Q ss_pred CCCCccccccc
Q 008856 443 DDDTMMVSFPL 453 (551)
Q Consensus 443 ~~~~~~~~~~~ 453 (551)
. +..++.
T Consensus 174 ~----l~~l~~ 180 (361)
T 2xot_A 174 K----LKKLPL 180 (361)
T ss_dssp C----CCCCCH
T ss_pred C----CCccCH
Confidence 3 555553
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.15 E-value=2.5e-10 Score=104.98 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=87.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
++++|++++|......+..+..+++|+.|++++ +.+..+ |..+..+++|++|++++ +.++.++.. ...+++|+.|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEE
Confidence 578888888765444445677788888888888 556665 66777888888888888 466666653 34456888888
Q ss_pred EccCcccccc-ccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCch
Q 008856 366 IYDCKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNME 416 (551)
Q Consensus 366 l~~c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~ 416 (551)
++++ .++.+ +..+..+++|+.|++++ .+..++.. ..+++|++|++++|+.
T Consensus 111 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8874 45544 45677778888888877 66666553 3456777777777763
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=5.7e-10 Score=101.65 Aligned_cols=145 Identities=26% Similarity=0.353 Sum_probs=82.6
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|++++| .+..++.
T Consensus 28 ~~l~~L~l~~-n~l~~~---~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n-~l~~~~~ 93 (208)
T 2o6s_A 28 AQTTYLDLET-NSLKSL---PNGVFDELTSLTQLYLGGN-KLQSLPNG----VFNKL----TSLTYLNLSTN-QLQSLPN 93 (208)
T ss_dssp TTCSEEECCS-SCCCCC---CTTTTTTCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCT
T ss_pred CCCcEEEcCC-CccCcC---ChhhhcccccCcEEECCCC-ccCccChh----hcCCC----CCcCEEECCCC-cCCccCH
Confidence 4666777766 355555 5555566677777777764 46655543 23444 67777777664 3344443
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCC
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP 216 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 216 (551)
.+..+++|++|+++++ .++.+++ +..+++|++|++++|. +..++...+ ..+++|+.|++++++.. ..+
T Consensus 94 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~~~------~~~ 164 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVF-DRLTSLQYIWLHDNPWD------CTC 164 (208)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCSCCBC------CCT
T ss_pred hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHh-ccCCCccEEEecCCCee------cCC
Confidence 3456677777777663 4555554 3456677777776653 444443211 22366777777765322 223
Q ss_pred CCccEEEEecC
Q 008856 217 SSLKMLTIWYC 227 (551)
Q Consensus 217 ~~L~~L~l~~~ 227 (551)
++++.|+++.+
T Consensus 165 ~~l~~L~~~~n 175 (208)
T 2o6s_A 165 PGIRYLSEWIN 175 (208)
T ss_dssp TTTHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 46677766654
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=1.3e-10 Score=105.84 Aligned_cols=125 Identities=24% Similarity=0.292 Sum_probs=71.2
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
+|++|++++|.........+..+++|++|++++ +.+..++. .+..+++|++|++++| .++.++.. ...+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEE
Confidence 477777777754433344566777777777777 45666543 3456777777777774 45555442 23455677777
Q ss_pred EccCcccccccc-ccccCCcccceeccc-cccccccC--CcCCCcceeEecCCc
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNM 415 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~ 415 (551)
++++ .++.++. .+.++++|+.|++++ .+..++.. ..+++|++|++++|+
T Consensus 107 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 7663 3444443 245556666666655 44444432 224455555555543
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=3.1e-10 Score=111.36 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=37.5
Q ss_pred CCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcC-EEEEcCCCCccccCC
Q 008856 431 FSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLT-ELVLRGCPKLKYFPE 508 (551)
Q Consensus 431 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~-~L~l~~c~~l~~l~~ 508 (551)
+++|+.+++.+|. +..++... |..+++|+++++.+ +++.++ ..+.++++|+ .+++.+ .++.++.
T Consensus 225 ~~~L~~l~L~~n~----i~~I~~~a------F~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTN----ATTIPDFT------FAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTTBC----CCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred cCCCeEEECCCCC----cceecHhh------hhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEch
Confidence 4555555555542 44454432 33445555555554 244444 3345555555 555554 4555544
Q ss_pred CCC--ccccceEeec
Q 008856 509 KGL--PSSLLELWIS 521 (551)
Q Consensus 509 ~~~--~~~L~~L~i~ 521 (551)
..+ +++|+.+++.
T Consensus 291 ~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 291 GAFMGCDNLRYVLAT 305 (329)
T ss_dssp TTTTTCTTEEEEEEC
T ss_pred hhhhCCccCCEEEeC
Confidence 322 3455555553
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=1e-10 Score=116.30 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=86.0
Q ss_pred cEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc
Q 008856 220 KMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK 299 (551)
Q Consensus 220 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 299 (551)
+.++.++ ..++.+ |..+.. .++.|++++ +.++. ++...+.. . .++|++|++++|..
T Consensus 21 ~~l~c~~-~~l~~i--P~~~~~----------~l~~L~Ls~-N~l~~-l~~~~~~~---~------l~~L~~L~L~~N~i 76 (361)
T 2xot_A 21 NILSCSK-QQLPNV--PQSLPS----------YTALLDLSH-NNLSR-LRAEWTPT---R------LTNLHSLLLSHNHL 76 (361)
T ss_dssp TEEECCS-SCCSSC--CSSCCT----------TCSEEECCS-SCCCE-ECTTSSSS---C------CTTCCEEECCSSCC
T ss_pred CEEEeCC-CCcCcc--CccCCC----------CCCEEECCC-CCCCc-cChhhhhh---c------ccccCEEECCCCcC
Confidence 4555555 355555 555443 466677666 44554 33222110 0 01366666666654
Q ss_pred hhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEEEccCcccccccc
Q 008856 300 LESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALEIYDCKRLKALPK 377 (551)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~ 377 (551)
....+..+..+++|++|++++ +.+..++ ..+..+++|++|++++| .+..+ +.....+++|+.|++++ +.++.+|.
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~ 153 (361)
T 2xot_A 77 NFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPV 153 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCSCCG
T ss_pred CccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCC-CcCCeeCH
Confidence 433344566666666666666 4455553 34555666666666663 33333 22333445666666666 34555544
Q ss_pred cc----ccCCcccceeccc-cccccccC--CcCCC--cceeEecCCc
Q 008856 378 GL----HNLSTLQDLTIGG-ALLSLEED--GLPTN--LHSLVIRGNM 415 (551)
Q Consensus 378 ~~----~~l~~L~~L~l~~-~l~~l~~~--~~~~~--L~~L~l~~~~ 415 (551)
.+ ..+++|+.|++++ .+..++.. ..++. ++.|++.+|+
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 32 3456666666665 44444422 12233 3555665555
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=2.3e-10 Score=100.45 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=71.6
Q ss_pred CccEEEEccCcccc--ccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccE
Q 008856 360 KLTALEIYDCKRLK--ALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRH 436 (551)
Q Consensus 360 ~L~~L~l~~c~~l~--~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 436 (551)
+|++|++++|. ++ .+|..+..+++|+.|++++ .+..++....+++|++|++++|..... .+.. +..+++|++
T Consensus 25 ~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~---~~~l~~L~~ 99 (168)
T 2ell_A 25 AVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDML---AEKLPNLTH 99 (168)
T ss_dssp SCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHH---HHHCTTCCE
T ss_pred cCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHH---HhhCCCCCE
Confidence 55555555543 33 4555555556666666655 444443334456666666666663321 2221 345677777
Q ss_pred EEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhh----hccCCCCcCEEEEcCCCCccccC
Q 008856 437 LTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS----SIIDLRNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~c~~l~~l~ 507 (551)
|++++|. +..++.-. .+..+++|++|++++ +.+..+|. .+..+++|++|++++|. ++.+|
T Consensus 100 L~Ls~N~----l~~~~~~~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 100 LNLSGNK----LKDISTLE-----PLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp EECBSSS----CCSSGGGG-----GGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EeccCCc----cCcchhHH-----HHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 7777763 45544200 112456677777776 46666553 56667777777777743 44444
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=3.3e-09 Score=104.04 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=60.5
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCcc-EE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLT-AL 364 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L 364 (551)
++..+.+.+.-...........+++|+.+++.+ +.+..++ ..+..+++|+++++.++ ++.++. ....+++|+ .+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 356666655432222222223467777777776 4566663 34566777777777763 555554 334455666 67
Q ss_pred EEccCccccccc-cccccCCcccceeccc-ccccccc
Q 008856 365 EIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEE 399 (551)
Q Consensus 365 ~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~ 399 (551)
++.+ .++.++ ..|.++++|+.+++.+ .+..++.
T Consensus 280 ~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 280 ELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp EECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred EEcc--cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 7665 455553 3456666666666644 5555544
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.05 E-value=7.7e-10 Score=101.68 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=61.4
Q ss_pred ccEEEeccCcchhhhH-hhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 289 LKSLRVRYCSKLESIA-ERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+++|++++|......+ ..+..+++|++|++++ +.+..++ ..+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEE
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEE
Confidence 5555555554322211 2345556666666665 4455442 34555666666666663 3333333 223344566666
Q ss_pred EccCcccccc-ccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCc
Q 008856 366 IYDCKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNM 415 (551)
Q Consensus 366 l~~c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~ 415 (551)
++++ .++.+ |..+..+++|+.|++++ .+..++.. ..+++|++|++++|+
T Consensus 112 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 6553 23333 34455555566665555 44444221 234555566665555
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=2.3e-12 Score=135.58 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=71.2
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEE
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHL 437 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 437 (551)
.|+.|++++ +.++.+|. +.++++|+.|++++ .+..+|.. +.+++|++|++++|.... + +. +..+++|+.|
T Consensus 442 ~L~~L~Ls~-n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-l-p~----l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAH-KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-V-DG----VANLPRLQEL 513 (567)
T ss_dssp TCSEEECTT-SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-C-GG----GTTCSSCCEE
T ss_pred CceEEEecC-CCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-C-cc----cCCCCCCcEE
Confidence 466666666 34555655 66666666666666 55555543 445677777777766332 2 21 5667777777
Q ss_pred EEeccCCCCccccc--ccccccccccccccccccccccccCCChhhhhh----hccCCCCcCEEE
Q 008856 438 TIDGCDDDTMMVSF--PLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS----SIIDLRNLTELV 496 (551)
Q Consensus 438 ~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~ 496 (551)
++++|. +..+ |... ..+++|+.|++++ |.++.+|. ....+|+|+.|+
T Consensus 514 ~Ls~N~----l~~~~~p~~l-------~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 514 LLCNNR----LQQSAAIQPL-------VSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ECCSSC----CCSSSTTGGG-------GGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ECCCCC----CCCCCCcHHH-------hcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 777773 5555 4433 2456777777777 56666652 233478888775
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.02 E-value=2.7e-10 Score=99.93 Aligned_cols=135 Identities=18% Similarity=0.118 Sum_probs=81.6
Q ss_pred CCCCcEEEEecCCCcc--cccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc-cccccccCCccc
Q 008856 310 NTSLETISIYNCENLK--ILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA-LPKGLHNLSTLQ 386 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~l~~L~ 386 (551)
.++|++|++++| .+. .+|..+..+++|++|++++|. ++.+ .....+++|+.|++++|. ++. +|..+.++++|+
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCC
Confidence 355666666663 344 455555666666666666643 4444 333344567777777643 333 555555677777
Q ss_pred ceeccc-cccccc---cCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccc
Q 008856 387 DLTIGG-ALLSLE---EDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPL 453 (551)
Q Consensus 387 ~L~l~~-~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 453 (551)
.|++++ .+..++ ....+++|++|++++|+... ..+.....+..+++|++|++++|. +..+|+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~----~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRE----DQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETT----SCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCC----hhhccc
Confidence 777777 555543 23457888888888887433 222100126789999999999984 555554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=1.3e-12 Score=137.42 Aligned_cols=105 Identities=14% Similarity=0.021 Sum_probs=55.2
Q ss_pred ccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccc
Q 008856 385 LQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLR 463 (551)
Q Consensus 385 L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (551)
|+.|++++ .+..+|..+.+++|++|++++|... .+ |.. +..+++|+.|++++|. +..+|. . .
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~l-p~~---~~~l~~L~~L~Ls~N~----l~~lp~-l-------~ 505 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-AL-PPA---LAALRCLEVLQASDNA----LENVDG-V-------A 505 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CC-CGG---GGGCTTCCEEECCSSC----CCCCGG-G-------T
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCccccc-cc-chh---hhcCCCCCEEECCCCC----CCCCcc-c-------C
Confidence 55566655 5555554444556666666665522 11 111 4555666666666652 444442 2 2
Q ss_pred ccccccccccccCCChhhh--hhhccCCCCcCEEEEcCCCCccccCC
Q 008856 464 LPTTLTSLRIEDFPNLERL--SSSIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 464 ~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
.+++|+.|++++ |.++.+ |..+..+++|++|++++ +.++.++.
T Consensus 506 ~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~ 550 (567)
T 1dce_A 506 NLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEG 550 (567)
T ss_dssp TCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSS
T ss_pred CCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCcc
Confidence 445666666665 455555 55555566666666666 33544443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.96 E-value=5.3e-10 Score=95.90 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=6.7
Q ss_pred cCCCccEEEEecc
Q 008856 430 RFSSLRHLTIDGC 442 (551)
Q Consensus 430 ~l~~L~~L~l~~~ 442 (551)
.+++|++|++++|
T Consensus 86 ~l~~L~~L~ls~N 98 (149)
T 2je0_A 86 KCPNLTHLNLSGN 98 (149)
T ss_dssp HCTTCCEEECTTS
T ss_pred hCCCCCEEECCCC
Confidence 3455555555554
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=1.5e-08 Score=101.66 Aligned_cols=212 Identities=12% Similarity=0.152 Sum_probs=140.4
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEI 366 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 366 (551)
+|+.+.+... ........|.+|++|+.+++.. +.+..++.....+.+|+.+.+.+ .++.+.. ....+++|+.+++
T Consensus 158 ~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCTT-CCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCCC-ccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence 3666666542 1122234677788888888876 56777755555567888888864 3555554 3445667888888
Q ss_pred ccCcccccccc-ccccCCcccceeccccccccccC--CcCCCcceeEecCCchh----hhhhhhhccccccCCCccEEEE
Q 008856 367 YDCKRLKALPK-GLHNLSTLQDLTIGGALLSLEED--GLPTNLHSLVIRGNMEI----WKSMIEWGRGFHRFSSLRHLTI 439 (551)
Q Consensus 367 ~~c~~l~~~~~-~~~~l~~L~~L~l~~~l~~l~~~--~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~l~~L~~L~l 439 (551)
.. .++.++. .|.+ .+|+.+.+...+..++.. ..+++|+++++.++... ..+.... +.++++|+.+++
T Consensus 234 ~~--~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a---F~~c~~L~~l~l 307 (401)
T 4fdw_A 234 PE--NVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC---LEGCPKLARFEI 307 (401)
T ss_dssp CT--TCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT---TTTCTTCCEECC
T ss_pred CC--CccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH---hhCCccCCeEEe
Confidence 65 3555553 3444 678888886666666655 34678888888776532 0112222 778899999998
Q ss_pred eccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCCCccccCCC---CCcccc
Q 008856 440 DGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFPEK---GLPSSL 515 (551)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L 515 (551)
... +..++... |...++|+.+.+.. +++.+. ..+.++ +|+++.+.+ +.+..++.. +++.++
T Consensus 308 ~~~-----i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 308 PES-----IRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp CTT-----CCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTC
T ss_pred CCc-----eEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCc
Confidence 854 77777644 45668899999965 677776 557778 999999998 456666653 334678
Q ss_pred ceEeecCCc
Q 008856 516 LELWISGCP 524 (551)
Q Consensus 516 ~~L~i~~c~ 524 (551)
+.+.+-...
T Consensus 373 ~~l~vp~~~ 381 (401)
T 4fdw_A 373 TVIRVPAES 381 (401)
T ss_dssp CEEEECGGG
T ss_pred cEEEeCHHH
Confidence 888887643
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.95 E-value=3.1e-10 Score=97.40 Aligned_cols=125 Identities=18% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCCcEEEEecCCCcc--cccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc-cccccccCCcccc
Q 008856 311 TSLETISIYNCENLK--ILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA-LPKGLHNLSTLQD 387 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~l~~L~~ 387 (551)
++|+.|++++| .+. .+|..+..+++|++|++++| .++.+ .....+++|+.|++++|. ++. +|..+.++++|+.
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCE
Confidence 34444455442 233 34444445555555555553 33333 222233455555555533 333 4444455666666
Q ss_pred eeccc-cccccc---cCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEe
Q 008856 388 LTIGG-ALLSLE---EDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTID 440 (551)
Q Consensus 388 L~l~~-~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 440 (551)
|++++ .+..++ ....+++|++|++++|+.. ...+.....+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 66666 444432 2245677777777777633 2222000115677888887754
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.88 E-value=1.4e-07 Score=94.82 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=34.9
Q ss_pred cCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecc
Q 008856 52 AGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILS 129 (551)
Q Consensus 52 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 129 (551)
....+..|.+|+++.+.. .++.+ ...+|..+.+|+.+++.+ +++.++.. ++... .+|+.+.+.
T Consensus 63 g~~AF~~c~~L~~i~lp~--~i~~I---~~~aF~~c~~L~~i~lp~--~l~~I~~~----aF~~c----~~L~~i~~p 125 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS--TVREI---GEFAFENCSKLEIINIPD--SVKMIGRC----TFSGC----YALKSILLP 125 (394)
T ss_dssp CTTTTTTCTTEEEEECCT--TCCEE---CTTTTTTCTTCCEECCCT--TCCEECTT----TTTTC----TTCCCCCCC
T ss_pred HHHHhhCCCCceEEEeCC--CccCc---chhHhhCCCCCcEEEeCC--CceEccch----hhccc----ccchhhccc
Confidence 333345566777777654 45555 555666667777777654 25555442 23333 555555554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.88 E-value=1.5e-09 Score=95.88 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=25.7
Q ss_pred ccccccccccCCChhhhhh--hccCCCCcCEEEEcCCCCccccCCC-----CCccccceEeecCCc
Q 008856 466 TTLTSLRIEDFPNLERLSS--SIIDLRNLTELVLRGCPKLKYFPEK-----GLPSSLLELWISGCP 524 (551)
Q Consensus 466 ~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~ 524 (551)
++|++|++++ +.++.+|. .+..+++|++|++++| .+..++.. ..+++|+.|+++++.
T Consensus 88 ~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 4444444444 34444442 3444555555555552 23443331 113455555555554
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.86 E-value=5.6e-09 Score=92.25 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=58.8
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ ..+..+++|++|++++| .++.+++. .+..+ ++|++|++++| .+..+|.
T Consensus 42 ~~L~~L~Ls~-N~l~~~-----~~l~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l----~~L~~L~L~~N-~i~~~~~ 105 (176)
T 1a9n_A 42 DQFDAIDFSD-NEIRKL-----DGFPLLRRLKTLLVNNN-RICRIGEG----LDQAL----PDLTELILTNN-SLVELGD 105 (176)
T ss_dssp TCCSEEECCS-SCCCEE-----CCCCCCSSCCEEECCSS-CCCEECSC----HHHHC----TTCCEEECCSC-CCCCGGG
T ss_pred CCCCEEECCC-CCCCcc-----cccccCCCCCEEECCCC-cccccCcc----hhhcC----CCCCEEECCCC-cCCcchh
Confidence 4666666666 344433 23456666666666664 36655543 12444 66666666664 3455554
Q ss_pred --ccCCCCCCceEEEccCCCCcccCC-----CCCCCCCcEEEccCCC
Q 008856 140 --SSFSLSSLREIEIFKCSSLVSFPE-----VALPSKLKKIQIGECD 179 (551)
Q Consensus 140 --~~~~l~~L~~L~l~~c~~l~~~~~-----~~~~~~L~~L~l~~~~ 179 (551)
.+..+++|++|+++++ .+..++. +..+++|++|+++++.
T Consensus 106 ~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 106 LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5566666677766663 3444443 3456777777776654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.86 E-value=2e-08 Score=90.07 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=59.5
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP- 138 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~- 138 (551)
++|++|++++ +.++.+ + ..+..+++|++|+++++ .++.+++. .+..+ ++|++|++++|. +..++
T Consensus 31 ~~l~~L~L~~-n~i~~i---p-~~~~~l~~L~~L~Ls~N-~i~~i~~~----~f~~l----~~L~~L~Ls~N~-l~~i~~ 95 (193)
T 2wfh_A 31 RDVTELYLDG-NQFTLV---P-KELSNYKHLTLIDLSNN-RISTLSNQ----SFSNM----TQLLTLILSYNR-LRCIPP 95 (193)
T ss_dssp TTCCEEECCS-SCCCSC---C-GGGGGCTTCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSSC-CCBCCT
T ss_pred CCCCEEECCC-CcCchh---H-HHhhcccCCCEEECCCC-cCCEeCHh----HccCC----CCCCEEECCCCc-cCEeCH
Confidence 4566666666 455554 4 34566666666666664 36655542 24444 666666666643 34333
Q ss_pred cccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 139 QSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
..+..+++|++|++++ +.++.++. +..+++|+.|++++|+
T Consensus 96 ~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 3456666666666666 34555554 3445666666666544
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.84 E-value=5.3e-09 Score=113.45 Aligned_cols=158 Identities=21% Similarity=0.133 Sum_probs=92.2
Q ss_pred CCcceEEeCCCCCcccccc---ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccC
Q 008856 12 PALCKMEIGGCKKVVWRSA---TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 88 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 88 (551)
+.++.|++.++..-..... ..+|+.+++.+..........+...+..+++|++|++++ +.+..+ +... ..++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~-n~l~~l---~~~~-~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSN-LQIFNI---SANI-FKYD 247 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTT-SCCSCC---CGGG-GGCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCC-CCCCCC---Chhh-cCCC
Confidence 5677888877655443332 233445554443333333345555667789999999999 456666 6554 5899
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-CCCC
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE-VALP 167 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~ 167 (551)
+|++|+|++| .++.+|.. +..+ ++|++|+|++| .+..+|..+..+++|++|+|+++ .++.+|. ++.+
T Consensus 248 ~L~~L~Ls~N-~l~~lp~~-----~~~l----~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l 315 (727)
T 4b8c_D 248 FLTRLYLNGN-SLTELPAE-----IKNL----SNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNL 315 (727)
T ss_dssp SCSCCBCTTS-CCSCCCGG-----GGGG----TTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSC
T ss_pred CCCEEEeeCC-cCcccChh-----hhCC----CCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CCCccChhhhcC
Confidence 9999999996 58888765 6777 99999999996 46789999999999999999995 6788886 7789
Q ss_pred CCCcEEEccCCCCccccch
Q 008856 168 SKLKKIQIGECDALKSLPE 186 (551)
Q Consensus 168 ~~L~~L~l~~~~~l~~~~~ 186 (551)
++|++|++++|.-...++.
T Consensus 316 ~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TTCCCEECTTSCCCSHHHH
T ss_pred CCccEEeCCCCccCCCChH
Confidence 9999999999764333433
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=5.3e-07 Score=90.40 Aligned_cols=166 Identities=11% Similarity=0.182 Sum_probs=96.7
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
.+..++++.+-+ .++.+ +..+|..+ +|+.+.+.. +++.+.... +.. .+|+.+.+.. .++.+
T Consensus 111 ~~~~l~~i~ip~--~i~~I---~~~aF~~~-~L~~i~l~~--~i~~I~~~a----F~~-----~~L~~i~lp~--~l~~I 171 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSI---PKDAFRNS-QIAKVVLNE--GLKSIGDMA----FFN-----STVQEIVFPS--TLEQL 171 (401)
T ss_dssp ECSSCSEEECCT--TCCEE---CTTTTTTC-CCSEEECCT--TCCEECTTT----TTT-----CCCCEEECCT--TCCEE
T ss_pred ecCCccEEEECC--ccCEe---hHhhcccC-CccEEEeCC--CccEECHHh----cCC-----CCceEEEeCC--CccEe
Confidence 356777777765 56666 66666654 688888775 377766642 322 3678888765 44555
Q ss_pred c-cccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 138 P-QSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 138 ~-~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
+ ..+..|.+|+.+++.+ +.++.++. ...+.+|+.+.+.. .+..++...+ .++++|+.+++.. +++.++...+
T Consensus 172 ~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF-~~~~~L~~l~l~~--~l~~I~~~aF 245 (401)
T 4fdw_A 172 KEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAF-LKTSQLKTIEIPE--NVSTIGQEAF 245 (401)
T ss_dssp CSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTT-TTCTTCCCEECCT--TCCEECTTTT
T ss_pred hHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHh-hCCCCCCEEecCC--CccCcccccc
Confidence 4 4566778888888876 45666665 23367788887763 3555554322 2336677777654 3445544422
Q ss_pred C-CCccEEEEecCCCccccccccc-ccccCCCcccccCCccEEEEec
Q 008856 216 P-SSLKMLTIWYCDNIRTLTVEEG-IQCSSSSRRYTSYLLEHLGIRY 260 (551)
Q Consensus 216 ~-~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~ 260 (551)
. .+|+.+.+.. +++.+ +.+ |.. +++|+.+.+.+
T Consensus 246 ~~~~L~~i~lp~--~i~~I--~~~aF~~--------c~~L~~l~l~~ 280 (401)
T 4fdw_A 246 RESGITTVKLPN--GVTNI--ASRAFYY--------CPELAEVTTYG 280 (401)
T ss_dssp TTCCCSEEEEET--TCCEE--CTTTTTT--------CTTCCEEEEES
T ss_pred ccCCccEEEeCC--CccEE--ChhHhhC--------CCCCCEEEeCC
Confidence 1 4566666642 44444 332 222 44566666554
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.80 E-value=3.8e-08 Score=86.88 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=66.9
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|++++| .+..++.
T Consensus 28 ~~l~~L~l~~-n~l~~~---~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 28 SSATRLELES-NKLQSL---PHGVFDKLTQLTKLSLSQN-QIQSLPDG----VFDKL----TKLTILYLHEN-KLQSLPN 93 (177)
T ss_dssp TTCSEEECCS-SCCCCC---CTTTTTTCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCT
T ss_pred CCCcEEEeCC-CcccEe---CHHHhcCcccccEEECCCC-cceEeChh----HccCC----CccCEEECCCC-CccccCH
Confidence 5677777777 455655 5555667777777777774 46666553 23444 77777777774 3444443
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
.+..+++|++|+++++ .++.++. +..+++|++|++++|.
T Consensus 94 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 3566777777777763 5566655 3456777777777755
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.79 E-value=2.2e-08 Score=89.72 Aligned_cols=105 Identities=12% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCccEEEecCCCCchhhcccCc-chhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-
Q 008856 60 PKLEELKINNIQNETCIWKSHN-ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL- 137 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~- 137 (551)
++|++|++++ +.++.+ +. ..+..+++|++|+++++ .++.+.+. ++..+ ++|++|++++|. +..+
T Consensus 29 ~~l~~L~l~~-n~i~~~---~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N~-l~~~~ 94 (192)
T 1w8a_A 29 LHTTELLLND-NELGRI---SSDGLFGRLPHLVKLELKRN-QLTGIEPN----AFEGA----SHIQELQLGENK-IKEIS 94 (192)
T ss_dssp TTCSEEECCS-CCCCSB---CCSCSGGGCTTCCEEECCSS-CCCCBCTT----TTTTC----TTCCEEECCSCC-CCEEC
T ss_pred CCCCEEECCC-CcCCcc---CCccccccCCCCCEEECCCC-CCCCcCHh----HcCCc----ccCCEEECCCCc-CCccC
Confidence 4888999988 566665 44 34788999999999985 57777553 36666 899999999864 4544
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
+..+..+++|++|+++++ .++.+.+ +..+++|++|++++|.
T Consensus 95 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 95 NKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 445788899999999984 6666543 5668899999998876
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.78 E-value=1.4e-09 Score=117.90 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=83.6
Q ss_pred hhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccccccccc
Q 008856 302 SIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHN 381 (551)
Q Consensus 302 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 381 (551)
..+..+..++.|+.|++++ +.+..+|..+..+++|++|++++| .++.+|.....+++|+.|++++| .++.+|..+.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSN-LQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTT-SCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCC-CCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcC
Confidence 4455677888888888888 557777777778888888888884 56677765566678888888884 46688888888
Q ss_pred CCcccceeccc-cccccccC-CcCCCcceeEecCCchh
Q 008856 382 LSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEI 417 (551)
Q Consensus 382 l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~ 417 (551)
+++|+.|++++ .+..+|.. +.+++|++|+|++|+..
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 88888888888 77777764 55788888888888843
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.74 E-value=9.8e-07 Score=88.61 Aligned_cols=300 Identities=15% Similarity=0.156 Sum_probs=139.8
Q ss_pred ccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEeccc
Q 008856 51 LAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSY 130 (551)
Q Consensus 51 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 130 (551)
+....+..|++|+.+++.+ .++.+ +..++..+.+|+.+.+.. .+..+.... +... . +....+..
T Consensus 85 I~~~aF~~c~~L~~i~lp~--~l~~I---~~~aF~~c~~L~~i~~p~--~l~~i~~~a----F~~~----~-~~~~~~~~ 148 (394)
T 4fs7_A 85 IGEFAFENCSKLEIINIPD--SVKMI---GRCTFSGCYALKSILLPL--MLKSIGVEA----FKGC----D-FKEITIPE 148 (394)
T ss_dssp ECTTTTTTCTTCCEECCCT--TCCEE---CTTTTTTCTTCCCCCCCT--TCCEECTTT----TTTC----C-CSEEECCT
T ss_pred cchhHhhCCCCCcEEEeCC--CceEc---cchhhcccccchhhcccC--ceeeeccee----eecc----c-ccccccCc
Confidence 3334445577777777754 45555 555666777777766654 244444321 2221 1 22222211
Q ss_pred Ccccccc-ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCc
Q 008856 131 CEGLVKL-PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL 207 (551)
Q Consensus 131 ~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 207 (551)
....+ ...+..+.+|+.+.+.+ .+..++. +..+++|+.+.+.. +++.+....+ ..+..|+.+.+.. ..
T Consensus 149 --~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F-~~~~~L~~i~~~~--~~ 219 (394)
T 4fs7_A 149 --GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR--NLKIIRDYCF-AECILLENMEFPN--SL 219 (394)
T ss_dssp --TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT--TCCEECTTTT-TTCTTCCBCCCCT--TC
T ss_pred --cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC--CceEeCchhh-ccccccceeecCC--Cc
Confidence 11222 22355566666666643 2333333 34456666665543 2333332211 1223444443332 11
Q ss_pred ceeccc-cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCC
Q 008856 208 TYIAAV-QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLP 286 (551)
Q Consensus 208 ~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 286 (551)
..+... ....+|+.+.+.. .++.+ ..... ..+..++.+.+... +.. ++...+.. .
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~--~~~~i--~~~~f-------~~~~~l~~~~~~~~--~~~-i~~~~F~~----------~ 275 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPD--SFTEL--GKSVF-------YGCTDLESISIQNN--KLR-IGGSLFYN----------C 275 (394)
T ss_dssp CEECTTTTTTCCCCEEEECT--TCCEE--CSSTT-------TTCSSCCEEEECCT--TCE-ECSCTTTT----------C
T ss_pred eEeehhhcccCCCceEEECC--Cceec--ccccc-------cccccceeEEcCCC--cce-eecccccc----------c
Confidence 112111 1123455555432 22222 22111 11445666665431 111 12111111 0
Q ss_pred CCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEE
Q 008856 287 PSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTAL 364 (551)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 364 (551)
..++.+...... .....+..+.+|+.+.+.. .+..+ ..++..+.+|+.+++.+ .++.+.. ....+++|+.+
T Consensus 276 ~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 276 SGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp TTCCEEEECSSE---ECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEE
T ss_pred cccceeccCcee---ecccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEE
Confidence 125555444331 1123456677777777754 35555 34556677788777754 2555544 33445677777
Q ss_pred EEccCccccccc-cccccCCcccceeccccccccccC-CcCCCcce
Q 008856 365 EIYDCKRLKALP-KGLHNLSTLQDLTIGGALLSLEED-GLPTNLHS 408 (551)
Q Consensus 365 ~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~l~~l~~~-~~~~~L~~ 408 (551)
.+.. .++.+. ..|.++++|+.+++...++.+... ..+++|+.
T Consensus 349 ~lp~--~l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 349 NFPL--SLRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CCCT--TCCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEE
T ss_pred EECc--cccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcE
Confidence 7754 255554 356777888888776644333321 23455554
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.72 E-value=4.1e-06 Score=84.00 Aligned_cols=321 Identities=13% Similarity=0.187 Sum_probs=156.7
Q ss_pred cCCcCCCCC-CccEEEecCCCCchhhcccCcchhcccCCccEEeecCC--ccccccchhhhhhhhhhhhccCCCccEEec
Q 008856 52 AGPLKPRIP-KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSC--PKLQSLVAEEEKDQQQQLCQLSCRLEYLIL 128 (551)
Q Consensus 52 ~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L 128 (551)
....+..+. .|+++.+-+ .++.+ ...+|..+.+|+.+.+..+ ..++.+... ++... .+|+.+.+
T Consensus 55 g~~aF~~~~~~L~sI~iP~--svt~I---g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~----aF~~c----~~L~~i~~ 121 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPD--TVTEI---GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQ----AFMFC----SELTDIPI 121 (394)
T ss_dssp CTTTTTTCCSCCCEEEECT--TCCEE---CTTTTTTCTTCCEEEEGGGCCCCCCEECTT----TTTTC----TTCCBCGG
T ss_pred CHhhccCCCCcCEEEEECC--CeeEE---hHHHhhCCccCceEeecCCCCCeeeEechh----hchhc----ccceeecc
Confidence 333344453 588888865 57777 7777888888888888753 235666553 34333 67777776
Q ss_pred ccCccccccc-cccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCC
Q 008856 129 SYCEGLVKLP-QSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCR 205 (551)
Q Consensus 129 ~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 205 (551)
.. .+..++ ..+..+.+|+.+.+.. .+..+.. +..+.+|+.+.+.. .+..+....+. ...|+.+.+-.
T Consensus 122 ~~--~~~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~--~~~l~~i~ip~-- 191 (394)
T 4gt6_A 122 LD--SVTEIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT--GTALTQIHIPA-- 191 (394)
T ss_dssp GT--TCSEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT--TCCCSEEEECT--
T ss_pred CC--ccceehhhhhhhhcccccccccc--eeeeecccceecccccccccccc--eeeEecccccc--ccceeEEEECC--
Confidence 54 344444 3456778888888854 3444444 45577888877754 34444443221 25566666643
Q ss_pred CcceeccccC--CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhcccc
Q 008856 206 SLTYIAAVQL--PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVG 283 (551)
Q Consensus 206 ~~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 283 (551)
.++.+....+ ...++...... .....+ ...+.. ........+.. ++.
T Consensus 192 ~~~~i~~~af~~c~~l~~~~~~~-~~~~~~--~~~~~~--------~~~~~~~~~~~------------~~~-------- 240 (394)
T 4gt6_A 192 KVTRIGTNAFSECFALSTITSDS-ESYPAI--DNVLYE--------KSANGDYALIR------------YPS-------- 240 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEEECC-SSSCBS--SSCEEE--------ECTTSCEEEEE------------CCT--------
T ss_pred cccccccchhhhccccceecccc-cccccc--cceeec--------ccccccccccc------------ccc--------
Confidence 2233332211 23333333222 111111 111110 00000000000 000
Q ss_pred CCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCc
Q 008856 284 NLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKL 361 (551)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L 361 (551)
...+..+.+... ........|.++..|+.+.+.. . +..+ ...+..+++|+.+.+.. .++.++. ....+++|
T Consensus 241 --~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L 313 (394)
T 4gt6_A 241 --QREDPAFKIPNG-VARIETHAFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISL 313 (394)
T ss_dssp --TCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred --ccccceEEcCCc-ceEcccceeeecccccEEeccc-c-cceecCcccccccccccccCCC--cccccCceeecCCCCc
Confidence 001222222111 0111123566777777777654 2 3333 34455677777777753 3444544 33345577
Q ss_pred cEEEEccCccccccc-cccccCCcccceeccccccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEE
Q 008856 362 TALEIYDCKRLKALP-KGLHNLSTLQDLTIGGALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLT 438 (551)
Q Consensus 362 ~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 438 (551)
+.+.+.. .++.+. ..|.++.+|+.+.+...+..++.. ..+++|+.+++.++..... . +....+|+.+.
T Consensus 314 ~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~---~----~~~~~~L~~i~ 384 (394)
T 4gt6_A 314 KSIDIPE--GITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWN---A----ISTDSGLQNLP 384 (394)
T ss_dssp CEEECCT--TCCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHH---T----CBCCCCC----
T ss_pred CEEEeCC--cccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeehh---h----hhccCCCCEEE
Confidence 7777753 355553 346667777777775555555544 2356677777666542221 1 34455666665
Q ss_pred Eecc
Q 008856 439 IDGC 442 (551)
Q Consensus 439 l~~~ 442 (551)
+..+
T Consensus 385 i~~~ 388 (394)
T 4gt6_A 385 VAPG 388 (394)
T ss_dssp ----
T ss_pred eCCC
Confidence 5543
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.71 E-value=6.2e-08 Score=86.81 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=39.7
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|++|++++|.. +.++..+..+++|+.|++++ +.+..+ +..+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 32 ~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSCC-CSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcC-chhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 366666666543 34444555666666666666 445544 234555566666666653 3433332 222333455555
Q ss_pred Ecc
Q 008856 366 IYD 368 (551)
Q Consensus 366 l~~ 368 (551)
+++
T Consensus 109 L~~ 111 (193)
T 2wfh_A 109 LHG 111 (193)
T ss_dssp CCS
T ss_pred CCC
Confidence 544
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.68 E-value=6.2e-08 Score=86.78 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=37.0
Q ss_pred ccEEEeccCcchhhhHh-hhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 289 LKSLRVRYCSKLESIAE-RLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+++|++++|......+. .+..+++|++|++++ +.+..+ |..+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 56666655533222111 245555666666655 344444 445555556666666553 3333332 122333455555
Q ss_pred Ecc
Q 008856 366 IYD 368 (551)
Q Consensus 366 l~~ 368 (551)
+++
T Consensus 109 L~~ 111 (192)
T 1w8a_A 109 LYD 111 (192)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.67 E-value=5e-10 Score=101.17 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=36.3
Q ss_pred cccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCC
Q 008856 326 ILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPT 404 (551)
Q Consensus 326 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~ 404 (551)
.+|..+..+++|++|++++| .++.++ ....+++|+.|++++| .++.+|..+..+++|+.|++++ .+..++....++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSGIEKLV 115 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence 33334444555555555552 333333 2222334555555542 2334444333444444444444 333333222234
Q ss_pred CcceeEecCCc
Q 008856 405 NLHSLVIRGNM 415 (551)
Q Consensus 405 ~L~~L~l~~~~ 415 (551)
+|++|++++|.
T Consensus 116 ~L~~L~l~~N~ 126 (198)
T 1ds9_A 116 NLRVLYMSNNK 126 (198)
T ss_dssp HSSEEEESEEE
T ss_pred CCCEEECCCCc
Confidence 44444444443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.67 E-value=8.9e-10 Score=99.49 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=100.9
Q ss_pred ccEEEeccCc-chhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 289 LKSLRVRYCS-KLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 289 L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
++...+.+.. .++.++..+..+++|++|++++ +.+..+| .+..+++|++|++++| .++.++.....+++|+.|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~-n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE-EEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCC-CCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 5555555442 2344555677788888888888 5576776 6777888999999884 566666544334589999998
Q ss_pred cCccccccccccccCCcccceeccc-ccccccc---CCcCCCcceeEecCCchhhhhhh------hhccccccCCCccEE
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEE---DGLPTNLHSLVIRGNMEIWKSMI------EWGRGFHRFSSLRHL 437 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~l~~L~~L 437 (551)
+| .++.+| .+..+++|+.|++++ .+..++. ...+++|++|++++|+....... .....+..+++|+.|
T Consensus 102 ~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CC-cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 85 566676 578889999999998 6666543 35678999999999985433211 001125678899988
Q ss_pred E
Q 008856 438 T 438 (551)
Q Consensus 438 ~ 438 (551)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.62 E-value=1.9e-07 Score=82.30 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=36.9
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|++++ +.+..++. .+..+++|++|++++| .++.++.. ...+++|+.|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 366666665543322233345555566666655 34444432 2345555555555552 33333332 12233444444
Q ss_pred Ecc
Q 008856 366 IYD 368 (551)
Q Consensus 366 l~~ 368 (551)
+++
T Consensus 107 l~~ 109 (177)
T 2o6r_A 107 LDT 109 (177)
T ss_dssp CCS
T ss_pred CcC
Confidence 444
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.60 E-value=1.1e-05 Score=80.84 Aligned_cols=300 Identities=13% Similarity=0.151 Sum_probs=149.6
Q ss_pred ccCCcCCCCCCccEEEecCC--CCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEec
Q 008856 51 LAGPLKPRIPKLEELKINNI--QNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLIL 128 (551)
Q Consensus 51 ~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L 128 (551)
+....+..|.+|+++.+.+. ..++.+ ...+|..+.+|+.+.+.. .++.+... ++... .+|+.+.+
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~I---g~~aF~~c~~L~~i~~~~--~~~~I~~~----aF~~c----~~L~~i~l 144 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVKKI---GRQAFMFCSELTDIPILD--SVTEIDSE----AFHHC----EELDTVTI 144 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCCEE---CTTTTTTCTTCCBCGGGT--TCSEECTT----TTTTC----TTCCEEEC
T ss_pred EhHHHhhCCccCceEeecCCCCCeeeEe---chhhchhcccceeeccCC--ccceehhh----hhhhh----cccccccc
Confidence 33444566888888888762 346766 667778888888887765 46666553 24433 78888888
Q ss_pred ccCccccccc-cccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCC
Q 008856 129 SYCEGLVKLP-QSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRS 206 (551)
Q Consensus 129 ~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 206 (551)
.. .+..++ ..+..+.+|+.+.+.+ .++.+.. +....+|+.+.+.. .+..+....+ ..+..++....... .
T Consensus 145 p~--~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af-~~c~~l~~~~~~~~-~ 216 (394)
T 4gt6_A 145 PE--GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPA--KVTRIGTNAF-SECFALSTITSDSE-S 216 (394)
T ss_dssp CT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECT--TCCEECTTTT-TTCTTCCEEEECCS-S
T ss_pred cc--eeeeecccceecccccccccccc--eeeEeccccccccceeEEEECC--cccccccchh-hhccccceeccccc-c
Confidence 64 234443 3466778888888864 4555554 22345688877754 2223222211 12244555544331 1
Q ss_pred cceeccc----cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccc
Q 008856 207 LTYIAAV----QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEV 282 (551)
Q Consensus 207 ~~~~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~ 282 (551)
...+... .............+.....+.+|+++.. ++...|..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~--------------------------i~~~aF~~------- 263 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVAR--------------------------IETHAFDS------- 263 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEE--------------------------ECTTTTTT-------
T ss_pred cccccceeecccccccccccccccccccceEEcCCcceE--------------------------cccceeee-------
Confidence 1111100 0000000011111111111212222211 11111110
Q ss_pred cCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCC
Q 008856 283 GNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAK 360 (551)
Q Consensus 283 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~ 360 (551)
..+|+.+.+.... .......+.++++|+.+.+. +.+..+ ...+..+.+|+.+.+.+ .++.+.. ....|.+
T Consensus 264 ---c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 264 ---CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp ---CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred ---cccccEEeccccc-ceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 0124444443321 12223456677777777774 335555 34456677888888765 2555544 3444567
Q ss_pred ccEEEEccCccccccc-cccccCCcccceeccccccccccCCcCCCcceeEecCC
Q 008856 361 LTALEIYDCKRLKALP-KGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGN 414 (551)
Q Consensus 361 L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~l~~l~~~~~~~~L~~L~l~~~ 414 (551)
|+.+.+.. .++.+. ..|.++++|+.+++.+....+.....+.+|+.+.+..+
T Consensus 336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence 88888853 355564 35778888888888772222233344567777766543
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=4.9e-08 Score=84.63 Aligned_cols=90 Identities=9% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhcc---CCCccEEecccCccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL---SCRLEYLILSYCEGLVK 136 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~l~~ 136 (551)
.+|++|++++|. +++. ....+..+++|++|+|++|..+++ .++..++.. +++|++|+|++|+.++.
T Consensus 61 ~~L~~LDLs~~~-Itd~---GL~~L~~~~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI---GFDHMEGLQYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGG---GGGGGTTCSCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHH---HHHHhcCCCCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 468999999976 6665 445567889999999999887776 445555432 35788888888876653
Q ss_pred cc-cccCCCCCCceEEEccCCCCcc
Q 008856 137 LP-QSSFSLSSLREIEIFKCSSLVS 160 (551)
Q Consensus 137 ~~-~~~~~l~~L~~L~l~~c~~l~~ 160 (551)
-. ..+..+++|++|++++|+.++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 21 2345677777777777776664
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.39 E-value=9.8e-07 Score=77.43 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=65.7
Q ss_pred cEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccc-c
Q 008856 63 EELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS-S 141 (551)
Q Consensus 63 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~-~ 141 (551)
+.+++++ +.++.+ |... .++|++|+++++ .++.+++. .+..+ ++|++|+|++| .+..+|.. +
T Consensus 15 ~~l~~~~-n~l~~i---P~~~---~~~L~~L~Ls~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~i~~~~~ 77 (174)
T 2r9u_A 15 TLVNCQN-IRLASV---PAGI---PTDKQRLWLNNN-QITKLEPG----VFDHL----VNLQQLYFNSN-KLTAIPTGVF 77 (174)
T ss_dssp SEEECCS-SCCSSC---CSCC---CTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTT
T ss_pred cEEEeCC-CCCCcc---CCCc---CCCCcEEEeCCC-CccccCHH----HhcCC----cCCCEEECCCC-CCCccChhHh
Confidence 5677776 556666 5442 267777887774 47666553 25555 77788888774 55666654 4
Q ss_pred CCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 142 FSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 142 ~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
..+++|++|++++ +.++.+++ +..+++|++|++++|.
T Consensus 78 ~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 78 DKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCCC
Confidence 6777888888877 46666665 5567788888887765
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.38 E-value=1.2e-06 Score=76.56 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=63.8
Q ss_pred ccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccc-
Q 008856 62 LEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS- 140 (551)
Q Consensus 62 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~- 140 (551)
.+++++++ +.++.+ |... .++|++|+++++ .++.+++. .+..+ ++|++|++++| .+..++..
T Consensus 11 ~~~l~~s~-n~l~~i---p~~~---~~~l~~L~L~~N-~i~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~l~~~~ 73 (170)
T 3g39_A 11 GTTVDCSG-KSLASV---PTGI---PTTTQVLYLYDN-QITKLEPG----VFDRL----TQLTRLDLDNN-QLTVLPAGV 73 (170)
T ss_dssp TTEEECTT-SCCSSC---CSCC---CTTCSEEECCSS-CCCCCCTT----TTTTC----TTCSEEECCSS-CCCCCCTTT
T ss_pred CCEEEeCC-CCcCcc---CccC---CCCCcEEEcCCC-cCCccChh----hhcCc----ccCCEEECCCC-CcCccChhh
Confidence 45677777 566666 5432 367777777774 47666553 24555 77777777774 44555543
Q ss_pred cCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 141 SFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 141 ~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
+..+++|++|++++ +.++.+++ +..+++|++|++++|.
T Consensus 74 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 74 FDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 46777777777777 45666655 4557777777777754
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.38 E-value=1.2e-06 Score=76.54 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=62.5
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
.++|++|++++ +.++.+ +...+..+++|++|+++++ +++.+++. .+..+ ++|++|+|++| .+..++
T Consensus 29 ~~~l~~L~L~~-N~i~~~---~~~~~~~l~~L~~L~Ls~N-~l~~l~~~----~f~~l----~~L~~L~L~~N-~l~~~~ 94 (170)
T 3g39_A 29 PTTTQVLYLYD-NQITKL---EPGVFDRLTQLTRLDLDNN-QLTVLPAG----VFDKL----TQLTQLSLNDN-QLKSIP 94 (170)
T ss_dssp CTTCSEEECCS-SCCCCC---CTTTTTTCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCC
T ss_pred CCCCcEEEcCC-CcCCcc---ChhhhcCcccCCEEECCCC-CcCccChh----hccCC----CCCCEEECCCC-ccCEeC
Confidence 37788888888 577766 6666788888888888885 58877764 24555 88888888885 556665
Q ss_pred c-ccCCCCCCceEEEccC
Q 008856 139 Q-SSFSLSSLREIEIFKC 155 (551)
Q Consensus 139 ~-~~~~l~~L~~L~l~~c 155 (551)
. .+..+++|++|+++++
T Consensus 95 ~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEEeCCC
Confidence 4 4778888888888874
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.30 E-value=2.1e-06 Score=75.25 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=39.1
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccccc-ccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|+.|++++ +.+..+|.. +..+++|++|++++ +.++.++.. ...+++|+.|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEE
Confidence 366666666544333344555555666666655 445555333 34455555555555 334444332 22333455555
Q ss_pred Ecc
Q 008856 366 IYD 368 (551)
Q Consensus 366 l~~ 368 (551)
+++
T Consensus 112 L~~ 114 (174)
T 2r9u_A 112 LYN 114 (174)
T ss_dssp CCS
T ss_pred eCC
Confidence 544
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=8.2e-07 Score=76.90 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=65.3
Q ss_pred ccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc----CCccEEeecCCccccccchhh
Q 008856 33 HLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI----CSLKRLTITSCPKLQSLVAEE 108 (551)
Q Consensus 33 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l----~~L~~L~l~~~~~l~~l~~~~ 108 (551)
+|+.|++++|......... ...|++|++|++++|..+++- .-..+..+ ++|++|+|++|.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~---gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----- 129 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDG---CLERLSQLENLQKSMLEMEIISCGNVTD----- 129 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHH---HHHHHHTCHHHHHHCCEEEEESCTTCCH-----
T ss_pred eEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHH---HHHHHHhcccccCCCCEEEcCCCCcCCH-----
Confidence 4788888888744433222 235899999999999988876 44445553 4799999999988877
Q ss_pred hhhhhhhhhccCCCccEEecccCccccc
Q 008856 109 EKDQQQQLCQLSCRLEYLILSYCEGLVK 136 (551)
Q Consensus 109 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~ 136 (551)
.++..++ .+++|++|++++|+.++.
T Consensus 130 --~Gl~~L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 --KGIIALH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp --HHHHHGG-GCTTCCEEEEESCTTCCC
T ss_pred --HHHHHHh-cCCCCCEEECCCCCCCCc
Confidence 4455554 359999999999987764
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=2.4e-07 Score=91.98 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=97.8
Q ss_pred ccccceeeeccccCccccee-ccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVF-LAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEE 109 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 109 (551)
.+.|+.|++.+|........ +...+....++|++|++++| .+.+. +.......+++|++|++++| .++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~--~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPA--GLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHH--HHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHH--HHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 56677888877765433221 12222233578999999985 45432 02222345678899999986 4665443332
Q ss_pred hhhhhhhhccCCCccEEecccCcccc-----ccccccCCCCCCceEEEccCCCCcccC-----C-CCCCCCCcEEEccCC
Q 008856 110 KDQQQQLCQLSCRLEYLILSYCEGLV-----KLPQSSFSLSSLREIEIFKCSSLVSFP-----E-VALPSKLKKIQIGEC 178 (551)
Q Consensus 110 ~~~~~~l~~~~~~L~~L~L~~~~~l~-----~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~-~~~~~~L~~L~l~~~ 178 (551)
...+. ...++|++|+|++|. +. .++..+..+++|++|++++| .++... . +...++|++|++++|
T Consensus 147 ~~~L~---~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 147 RDLLL---HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHH---STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHH---hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 22221 123789999998874 33 23445567888999999885 454321 1 345678999999887
Q ss_pred CCccccchhhhh---ccCCCccEEEEecCC
Q 008856 179 DALKSLPEAWMC---DTNSSLEILSIHGCR 205 (551)
Q Consensus 179 ~~l~~~~~~~~~---~~~~~L~~L~l~~~~ 205 (551)
. +.+....... ..+++|++|++++|.
T Consensus 222 ~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 G-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp C-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred C-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 5 4443221111 133779999998864
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.23 E-value=0.00024 Score=70.53 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=44.5
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
..+|+++.+.. .++.+ +..+|..+.+|+.+++.. .++.|...- +.. .+|+.+.+.. .++.++
T Consensus 45 ~~~i~~v~ip~--~vt~I---g~~aF~~C~~L~~I~lp~--~v~~Ig~~a----F~~-----c~l~~i~~~~--~l~~I~ 106 (379)
T 4h09_A 45 RDRISEVRVNS--GITSI---GEANFNSCYNMTKVTVAS--TVTSIGDGA----FAD-----TKLQSYTGME--RVKKFG 106 (379)
T ss_dssp GGGCSEEEECT--TEEEE---CTTTTTTCTTCCEEEECT--TCCEECTTT----TTT-----CCCCEEEECT--TCCEEC
T ss_pred ccCCEEEEeCC--CccCh---HHHHhhCCCCCCEEEeCC--cceEechhh----hcC-----CCCceEECCc--eeeEec
Confidence 45677777765 56666 666677777777777754 366665532 222 2455555542 344454
Q ss_pred cccCCCCCCceEEEcc
Q 008856 139 QSSFSLSSLREIEIFK 154 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~ 154 (551)
.......+|+++.+.+
T Consensus 107 ~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 107 DYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTTTCCCSEEECCT
T ss_pred cceeccCCcccccCCC
Confidence 4433344667666653
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=1.7e-06 Score=85.26 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=21.0
Q ss_pred cccccccccccCCChhh-----hhhhccCCCCcCEEEEcCC
Q 008856 465 PTTLTSLRIEDFPNLER-----LSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 465 ~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~c 500 (551)
+++|++|+++. +.+.. ++..+.++++|+.|++++|
T Consensus 278 ~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 34666666655 44443 3334456777888888775
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.17 E-value=0.00012 Score=72.70 Aligned_cols=287 Identities=15% Similarity=0.154 Sum_probs=146.0
Q ss_pred eccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecc
Q 008856 50 FLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILS 129 (551)
Q Consensus 50 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 129 (551)
.++...+..|.+|+++++.. .++.+ ...+|..+ +|+.+.+.. +++.+.... +. ..+|+.+.+.
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~--~v~~I---g~~aF~~c-~l~~i~~~~--~l~~I~~~a----F~-----~~~L~~i~lp 121 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAS--TVTSI---GDGAFADT-KLQSYTGME--RVKKFGDYV----FQ-----GTDLDDFEFP 121 (379)
T ss_dssp EECTTTTTTCTTCCEEEECT--TCCEE---CTTTTTTC-CCCEEEECT--TCCEECTTT----TT-----TCCCSEEECC
T ss_pred ChHHHHhhCCCCCCEEEeCC--cceEe---chhhhcCC-CCceEECCc--eeeEeccce----ec-----cCCcccccCC
Confidence 45555677899999999975 57777 77777776 788888764 477766542 32 1579999997
Q ss_pred cCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCc
Q 008856 130 YCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL 207 (551)
Q Consensus 130 ~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 207 (551)
+ .+..+........+|+.+.+.. .++.+.. +..+.+++.+.+............ ...............|
T Consensus 122 ~--~~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 193 (379)
T 4h09_A 122 G--ATTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENY-VLYNKNKTILESYPAA--- 193 (379)
T ss_dssp T--TCCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETT-EEEETTSSEEEECCTT---
T ss_pred C--ccccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccc-eecccccceecccccc---
Confidence 5 3445554444444677776653 4555443 455777777777653322111110 0000000000001111
Q ss_pred ceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCC
Q 008856 208 TYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPP 287 (551)
Q Consensus 208 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~ 287 (551)
..+..+.+.. ....+. ...+.. +.+++.+.+.. .+.. ++...+.. ..
T Consensus 194 ---------~~~~~~~~~~--~~~~i~-~~~f~~--------~~~l~~i~~~~--~~~~-i~~~~f~~----------~~ 240 (379)
T 4h09_A 194 ---------KTGTEFTIPS--TVKTVT-AYGFSY--------GKNLKKITITS--GVTT-LGDGAFYG----------MK 240 (379)
T ss_dssp ---------CCCSEEECCT--TCCEEC-TTTTTT--------CSSCSEEECCT--TCCE-ECTTTTTT----------CS
T ss_pred ---------cccccccccc--ceeEEe-eccccc--------ccccceeeecc--ceeE-EccccccC----------Cc
Confidence 1122221111 111110 011111 23344444322 1222 11111111 01
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|+.+.+..+ ........+.++.+|+.+.+.. .+..+ ...+..+++|+.+.+.+ ..++.+.. ....+++|+.+.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEE
T ss_pred cceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCCCCEEE
Confidence 3555555443 1111233566677777777753 35554 33455677788887766 34555544 344556788877
Q ss_pred EccCccccccc-cccccCCcccceeccccccccccC
Q 008856 366 IYDCKRLKALP-KGLHNLSTLQDLTIGGALLSLEED 400 (551)
Q Consensus 366 l~~c~~l~~~~-~~~~~l~~L~~L~l~~~l~~l~~~ 400 (551)
+.. .++.+. ..|.++.+|+.+.+...++.++..
T Consensus 317 lp~--~l~~I~~~aF~~C~~L~~i~ip~~v~~I~~~ 350 (379)
T 4h09_A 317 LPT--ALKTIQVYAFKNCKALSTISYPKSITLIESG 350 (379)
T ss_dssp CCT--TCCEECTTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred cCc--cccEEHHHHhhCCCCCCEEEECCccCEEchh
Confidence 753 355554 357778888888876555555544
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.08 E-value=9.3e-06 Score=79.84 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=60.1
Q ss_pred EEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-cccC
Q 008856 64 ELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP-QSSF 142 (551)
Q Consensus 64 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~~~~ 142 (551)
.++.++.++++.+ |. +..+++|+.|+|++++.++.+++. .+..+ ++|+.|+|++| .+..++ ..+.
T Consensus 12 ~v~~~~~n~l~~i---p~--l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l----~~L~~L~l~~N-~l~~~~~~~~~ 77 (347)
T 2ifg_A 12 GLRCTRDGALDSL---HH--LPGAENLTELYIENQQHLQHLELR----DLRGL----GELRNLTIVKS-GLRFVAPDAFH 77 (347)
T ss_dssp CEECCSSCCCTTT---TT--SCSCSCCSEEECCSCSSCCEECGG----GSCSC----CCCSEEECCSS-CCCEECTTGGG
T ss_pred EEEcCCCCCCCcc---CC--CCCCCCeeEEEccCCCCCCCcChh----Hhccc----cCCCEEECCCC-ccceeCHHHhc
Confidence 3455553356666 54 566677777777753456666653 25555 77777777775 344443 3456
Q ss_pred CCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCC
Q 008856 143 SLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECD 179 (551)
Q Consensus 143 ~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~ 179 (551)
.+++|++|+|++ +.++.+++ ......|+.|++.+|.
T Consensus 78 ~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 78 FTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCC
Confidence 677777777776 45666664 2222237777776654
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=1.3e-06 Score=86.65 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=108.2
Q ss_pred CCCcceEEeCCCCCcc-----ccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCc
Q 008856 11 LPALCKMEIGGCKKVV-----WRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHN 81 (551)
Q Consensus 11 ~~~L~~L~l~~~~~~~-----~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 81 (551)
+++|++|++++|.... +.. ...+|+.|++.+|........ .+...+++|++|++++| .+.+. ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~---~l~~~L~~L~~L~Ls~n-~l~~~---~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR---TLLPVFLRARKLGLQLN-SLGPE---AC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHH---HTHHHHHTEEEEECCSS-CCCHH---HH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHH---HHHHHHHhccHhhcCCC-CCCHH---HH
Confidence 5689999999997544 111 236899999999975443221 11223578999999995 66544 32
Q ss_pred chh-----cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-----ccccccCCCCCCceEE
Q 008856 82 ELL-----QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-----KLPQSSFSLSSLREIE 151 (551)
Q Consensus 82 ~~~-----~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-----~~~~~~~~l~~L~~L~ 151 (551)
..+ ...++|++|++++|. ++......++.++... ++|++|+|++|. +. .+...+...++|++|+
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~----~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGN----TSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTC----SSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEE
T ss_pred HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcC----CCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEE
Confidence 333 246889999999974 7765544444445545 899999999975 33 2345667788999999
Q ss_pred EccCCCCcccC-----C-CCCCCCCcEEEccCCCCccccc
Q 008856 152 IFKCSSLVSFP-----E-VALPSKLKKIQIGECDALKSLP 185 (551)
Q Consensus 152 l~~c~~l~~~~-----~-~~~~~~L~~L~l~~~~~l~~~~ 185 (551)
+++| .++... . +...++|++|++++|. +....
T Consensus 218 Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g 255 (372)
T 3un9_A 218 VAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSEG 255 (372)
T ss_dssp CCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHH
Confidence 9996 455322 1 2346889999999976 54433
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=1.3e-05 Score=78.87 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=22.0
Q ss_pred CccEEEeccCcchhh----hHhhhcCCCCCcEEEEecC
Q 008856 288 SLKSLRVRYCSKLES----IAERLDNNTSLETISIYNC 321 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~ 321 (551)
+|++|+++.|..... +...+..+++|+.|++++|
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 388888877754433 2333345678888888774
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.89 E-value=2.7e-05 Score=76.50 Aligned_cols=90 Identities=27% Similarity=0.252 Sum_probs=71.0
Q ss_pred ccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEeccc
Q 008856 51 LAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSY 130 (551)
Q Consensus 51 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 130 (551)
+|. ...+++|++|++++.+.++.+ +...|..+++|+.|+|+++ .++.+++. .+..+ ++|++|+|++
T Consensus 24 ip~--l~~~~~L~~L~l~~~n~l~~~---~~~~~~~l~~L~~L~l~~N-~l~~~~~~----~~~~l----~~L~~L~l~~ 89 (347)
T 2ifg_A 24 LHH--LPGAENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIVKS-GLRFVAPD----AFHFT----PRLSRLNLSF 89 (347)
T ss_dssp TTT--SCSCSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECCSS-CCCEECTT----GGGSC----SCCCEEECCS
T ss_pred cCC--CCCCCCeeEEEccCCCCCCCc---ChhHhccccCCCEEECCCC-ccceeCHH----HhcCC----cCCCEEeCCC
Confidence 454 556789999999976788888 7777889999999999996 58888774 36667 9999999998
Q ss_pred CccccccccccCCCCCCceEEEccC
Q 008856 131 CEGLVKLPQSSFSLSSLREIEIFKC 155 (551)
Q Consensus 131 ~~~l~~~~~~~~~l~~L~~L~l~~c 155 (551)
| .+..+|..+.....|++|++.++
T Consensus 90 N-~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp S-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred C-ccceeCHHHcccCCceEEEeeCC
Confidence 5 66777765444444999999884
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.50 E-value=6e-05 Score=66.62 Aligned_cols=91 Identities=12% Similarity=-0.067 Sum_probs=49.9
Q ss_pred CCCccEEEecCCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEec--ccCcccc
Q 008856 59 IPKLEELKINNIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLIL--SYCEGLV 135 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L--~~~~~l~ 135 (551)
.++|++|+++++ .+.+- .......+...+.|++|+|++|. +..-....++.++... ++|++|+| ++|..-.
T Consensus 64 ~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n----~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 64 NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSN----TSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGC----SSCCEEECCCCSSCCCH
T ss_pred CCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhC----CCceEEEecCCCCCCCH
Confidence 567777888774 44432 00011223445778888888753 5553333233333333 67888888 5543211
Q ss_pred ----ccccccCCCCCCceEEEccC
Q 008856 136 ----KLPQSSFSLSSLREIEIFKC 155 (551)
Q Consensus 136 ----~~~~~~~~l~~L~~L~l~~c 155 (551)
.+...+...++|++|+++++
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHhCCCcCEEeccCC
Confidence 13344555677888888764
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.17 E-value=0.00013 Score=64.44 Aligned_cols=117 Identities=22% Similarity=0.119 Sum_probs=75.8
Q ss_pred CCCCCccEEEecCCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc
Q 008856 57 PRIPKLEELKINNIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV 135 (551)
Q Consensus 57 ~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~ 135 (551)
...++|++|+++++..+.+- .......+...+.|++|+|++|. +.+-....++..+... ++|++|+|++|..-.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n----~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVN----NTLKSLNVESNFISG 107 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHC----SSCCEEECCSSCCCH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhC----CCcCEEECcCCcCCH
Confidence 44789999999986355432 00012334567899999999974 6654333333344433 899999999974322
Q ss_pred ----ccccccCCCCCCceEEE--ccCCCCccc-----CC-CCCCCCCcEEEccCCC
Q 008856 136 ----KLPQSSFSLSSLREIEI--FKCSSLVSF-----PE-VALPSKLKKIQIGECD 179 (551)
Q Consensus 136 ----~~~~~~~~l~~L~~L~l--~~c~~l~~~-----~~-~~~~~~L~~L~l~~~~ 179 (551)
.+...+...++|++|++ ++ +.+..- .. +...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 24556777889999999 55 345432 11 2346789999998865
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.67 E-value=0.0015 Score=60.79 Aligned_cols=82 Identities=21% Similarity=0.099 Sum_probs=50.1
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCC--CCceEEEccCCCCcccC
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLS--SLREIEIFKCSSLVSFP 162 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~--~L~~L~l~~c~~l~~~~ 162 (551)
..+++|+.|+|+++ .++.++.-. ..+..+ ++|+.|+|++| .+..+. .+..+. +|++|++++++-...++
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~--~~~~~l----~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMS--SIVQKA----PNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGT--THHHHS----TTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCC-CCCCCccch--hHHhhC----CCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 45788888888885 477664310 123344 88888888875 444432 233333 88888888865433333
Q ss_pred C--------CCCCCCCcEEEc
Q 008856 163 E--------VALPSKLKKIQI 175 (551)
Q Consensus 163 ~--------~~~~~~L~~L~l 175 (551)
. +..+|+|+.|+-
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESS
T ss_pred cchhHHHHHHHHCcccCeECC
Confidence 1 345788887763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.62 E-value=0.0011 Score=61.82 Aligned_cols=59 Identities=19% Similarity=0.099 Sum_probs=40.7
Q ss_pred cCCCccEEecccCccccc---cccccCCCCCCceEEEccCCCCcccCCCCCCC--CCcEEEccCCC
Q 008856 119 LSCRLEYLILSYCEGLVK---LPQSSFSLSSLREIEIFKCSSLVSFPEVALPS--KLKKIQIGECD 179 (551)
Q Consensus 119 ~~~~L~~L~L~~~~~l~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--~L~~L~l~~~~ 179 (551)
.+++|++|+|++| .+.. ++..+..+++|+.|+|++ +.++.+..+..+. +|++|++++|+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCc
Confidence 4588999999885 3443 334556788888888887 5666654444444 78888888766
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.46 E-value=0.16 Score=44.51 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=46.2
Q ss_pred CCCccEEEecCCCCchhhcccCcc----hhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcc-
Q 008856 59 IPKLEELKINNIQNETCIWKSHNE----LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEG- 133 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~----~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~- 133 (551)
-..|++|+++++ .+.+. .+. .+..-..|++|+|+++ .+..-....++.++. ....|++|+|+++..
T Consensus 69 N~~L~~L~L~~n-~igd~---ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~----~N~tL~~L~L~n~~~~ 139 (197)
T 1pgv_A 69 SKHIEKFSLANT-AISDS---EARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTL----VTQSIVEFKADNQRQS 139 (197)
T ss_dssp CSCCCEEECTTS-CCBHH---HHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTT----TTCCCSEEECCCCSSC
T ss_pred CCCcCEEEccCC-CCChH---HHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHh----hCCceeEEECCCCcCc
Confidence 356777777773 44443 222 2334567888888875 355433322222222 236688888875321
Q ss_pred -cc-----ccccccCCCCCCceEEEcc
Q 008856 134 -LV-----KLPQSSFSLSSLREIEIFK 154 (551)
Q Consensus 134 -l~-----~~~~~~~~l~~L~~L~l~~ 154 (551)
+. .+...+..-+.|++|+++.
T Consensus 140 ~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 140 VLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 11 1223344456777777754
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.53 E-value=0.18 Score=41.05 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=24.9
Q ss_pred ccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 464 LPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 464 ~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
++++|+.|+|++ |+++.++ ..+..+++|++|++.+++
T Consensus 29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 355677777777 6777776 345667777777777644
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.49 E-value=0.33 Score=42.49 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=18.2
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccC
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYC 131 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~ 131 (551)
.-..|+.|+|++|. +.+-....++..+..= +.|++|+|++|
T Consensus 68 ~N~~L~~L~L~~n~-igd~ga~alA~aL~~N----~tL~~L~L~~N 108 (197)
T 1pgv_A 68 NSKHIEKFSLANTA-ISDSEARGLIELIETS----PSLRVLNVESN 108 (197)
T ss_dssp TCSCCCEEECTTSC-CBHHHHTTHHHHHHHC----SSCCEEECCSS
T ss_pred hCCCcCEEEccCCC-CChHHHHHHHHHHhcC----CccCeEecCCC
Confidence 34455555555542 4443332222222222 55555555553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.91 E-value=0.47 Score=38.47 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=15.2
Q ss_pred CccEEEecCCCCchhhcccCcchhcccCCccEEeecC
Q 008856 61 KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITS 97 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 97 (551)
+|++|+|++ +.++.+ +...|..+++|+.|+|.+
T Consensus 32 ~l~~L~Ls~-N~l~~l---~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTG-NNLTAL---PPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTT-SCCSSC---CTTTGGGCTTCCEEECCS
T ss_pred CCCEEECCC-CcCCcc---ChhhhhhccccCEEEecC
Confidence 344444444 344444 444444444444444444
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.70 E-value=22 Score=26.81 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=26.7
Q ss_pred ccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecC
Q 008856 51 LAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITS 97 (551)
Q Consensus 51 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 97 (551)
+....+..|.+|+++.+-. .++.+ ...+|..+.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~--~v~~I---g~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQP--NIGLL---YDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECT--TSSCC---CTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCC--chheE---cHHHHhccCCccEEEEcC
Confidence 3334455567777777765 45555 555667777777777765
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.32 E-value=1.3e+02 Score=22.46 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=23.2
Q ss_pred CcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEeccc
Q 008856 80 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSY 130 (551)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 130 (551)
...+|..+..|+.+.|-. .++.|... ++... .+|+.+.+.+
T Consensus 12 ~~~aF~~c~~L~~i~iP~--~v~~Ig~~----aF~~C----~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQP--NIGLLYDG----MFSGC----TALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECT--TSSCCCTT----SSTTC----TTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCC--chheEcHH----HHhcc----CCccEEEEcC
Confidence 455566677777777665 35555442 23333 5666666654
Done!