Query 008859
Match_columns 551
No_of_seqs 391 out of 2883
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 17:29:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 1E-128 2E-133 1069.0 49.6 539 6-546 3-552 (868)
2 PLN02270 phospholipase D alpha 100.0 9E-117 2E-121 975.2 45.2 473 13-546 4-484 (808)
3 PLN02352 phospholipase D epsil 100.0 4E-104 8E-109 873.4 42.1 443 14-551 7-471 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 6.9E-91 1.5E-95 765.0 29.3 472 6-537 65-546 (887)
5 PLN02866 phospholipase D 100.0 1.5E-45 3.2E-50 415.1 25.8 209 203-462 321-549 (1068)
6 cd04015 C2_plant_PLD C2 domain 100.0 3.1E-30 6.7E-35 242.1 17.3 157 12-180 2-158 (158)
7 PRK12452 cardiolipin synthetas 100.0 2.6E-28 5.6E-33 267.8 21.1 172 204-461 132-303 (509)
8 PRK01642 cls cardiolipin synth 100.0 2.2E-27 4.7E-32 259.7 21.3 176 203-462 107-283 (483)
9 PRK11263 cardiolipin synthase 99.9 9E-24 2E-28 226.1 18.5 167 207-459 3-169 (411)
10 cd04013 C2_SynGAP_like C2 doma 99.9 1.3E-23 2.9E-28 193.9 16.4 127 13-186 7-145 (146)
11 cd04016 C2_Tollip C2 domain pr 99.9 7.6E-23 1.7E-27 183.6 15.0 117 17-179 2-121 (121)
12 cd08379 C2D_MCTP_PRT_plant C2 99.9 8.2E-21 1.8E-25 171.6 14.4 114 19-175 2-125 (126)
13 cd08682 C2_Rab11-FIP_classI C2 99.8 2.1E-20 4.5E-25 168.5 13.8 117 19-178 1-126 (126)
14 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.5E-20 9.7E-25 165.1 15.5 120 18-181 1-121 (121)
15 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.4E-19 3.1E-24 163.4 16.1 121 16-182 3-125 (126)
16 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.8E-19 8.3E-24 159.6 14.1 119 19-179 2-121 (121)
17 cd04019 C2C_MCTP_PRT_plant C2 99.8 5.7E-19 1.2E-23 164.4 14.7 121 19-182 2-134 (150)
18 cd08681 C2_fungal_Inn1p-like C 99.8 3.1E-19 6.7E-24 158.6 12.1 116 17-179 1-118 (118)
19 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.3E-18 2.9E-23 156.1 13.0 98 80-180 17-120 (121)
20 cd04044 C2A_Tricalbin-like C2 99.8 1.7E-18 3.6E-23 154.7 13.5 121 17-181 2-124 (124)
21 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.6E-18 3.5E-23 156.4 13.4 120 18-181 1-127 (127)
22 cd08678 C2_C21orf25-like C2 do 99.8 3.1E-18 6.8E-23 154.4 14.9 105 80-184 18-124 (126)
23 cd08377 C2C_MCTP_PRT C2 domain 99.8 3.6E-18 7.9E-23 151.7 14.8 117 17-179 1-118 (119)
24 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 7.1E-18 1.5E-22 151.2 14.4 118 18-178 1-120 (121)
25 COG1502 Cls Phosphatidylserine 99.8 1.6E-17 3.5E-22 179.5 19.8 168 209-461 57-226 (438)
26 cd08391 C2A_C2C_Synaptotagmin_ 99.8 7.6E-18 1.6E-22 149.8 13.8 120 17-179 1-121 (121)
27 cd04014 C2_PKC_epsilon C2 doma 99.8 1.5E-17 3.2E-22 151.2 15.5 127 15-182 2-131 (132)
28 cd04024 C2A_Synaptotagmin-like 99.8 1E-17 2.2E-22 150.7 14.0 120 17-179 1-128 (128)
29 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1.3E-17 2.7E-22 151.4 13.5 120 18-180 1-133 (133)
30 cd04036 C2_cPLA2 C2 domain pre 99.7 1.8E-17 3.8E-22 147.9 13.5 113 19-179 2-117 (119)
31 cd08376 C2B_MCTP_PRT C2 domain 99.7 4.2E-17 9E-22 144.5 15.3 112 19-180 2-115 (116)
32 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.6E-17 5.7E-22 147.5 14.2 116 19-177 2-122 (123)
33 cd08373 C2A_Ferlin C2 domain f 99.7 3.7E-17 8E-22 147.4 14.6 103 80-185 15-121 (127)
34 cd08688 C2_KIAA0528-like C2 do 99.7 1.3E-17 2.9E-22 146.8 10.7 101 19-161 1-109 (110)
35 cd08685 C2_RGS-like C2 domain 99.7 1.3E-17 2.8E-22 149.3 9.9 103 14-159 9-119 (119)
36 cd08381 C2B_PI3K_class_II C2 d 99.7 4.3E-17 9.3E-22 146.5 11.3 103 14-159 10-121 (122)
37 cd04046 C2_Calpain C2 domain p 99.7 2.2E-16 4.8E-21 142.5 15.7 121 16-181 2-123 (126)
38 cd04045 C2C_Tricalbin-like C2 99.7 8.4E-17 1.8E-21 144.2 12.3 104 17-163 1-105 (120)
39 PHA03003 palmytilated EEV memb 99.7 1.9E-16 4.2E-21 168.0 17.2 144 241-462 30-173 (369)
40 cd08375 C2_Intersectin C2 doma 99.7 1.8E-16 3.8E-21 145.3 14.4 114 17-179 15-135 (136)
41 cd08385 C2A_Synaptotagmin-1-5- 99.7 1.3E-16 2.9E-21 143.0 13.2 101 17-159 16-122 (124)
42 cd04050 C2B_Synaptotagmin-like 99.7 1.1E-16 2.4E-21 139.7 12.0 98 19-161 2-102 (105)
43 cd08382 C2_Smurf-like C2 domai 99.7 1.5E-16 3.3E-21 143.0 13.1 117 18-177 1-122 (123)
44 cd08395 C2C_Munc13 C2 domain t 99.7 1.1E-16 2.4E-21 143.5 12.0 99 18-159 1-110 (120)
45 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.2E-16 2.7E-21 143.3 11.5 102 16-159 15-122 (124)
46 cd04051 C2_SRC2_like C2 domain 99.7 1.2E-16 2.7E-21 143.5 10.6 113 18-175 1-125 (125)
47 cd04043 C2_Munc13_fungal C2 do 99.7 5.9E-16 1.3E-20 139.1 14.8 114 18-181 2-122 (126)
48 cd04028 C2B_RIM1alpha C2 domai 99.7 2.7E-16 5.9E-21 145.5 12.7 108 13-162 25-139 (146)
49 KOG1030 Predicted Ca2+-depende 99.7 1.3E-16 2.9E-21 147.8 10.0 100 13-155 2-102 (168)
50 cd08383 C2A_RasGAP C2 domain ( 99.7 6.5E-16 1.4E-20 136.7 13.9 97 80-179 18-117 (117)
51 cd08394 C2A_Munc13 C2 domain f 99.7 4.5E-16 9.8E-21 140.0 12.9 97 17-160 2-100 (127)
52 cd04029 C2A_SLP-4_5 C2 domain 99.7 4.7E-16 1E-20 140.4 13.0 103 16-159 14-124 (125)
53 cd04017 C2D_Ferlin C2 domain f 99.7 9.2E-16 2E-20 140.1 14.3 118 18-182 2-134 (135)
54 cd08677 C2A_Synaptotagmin-13 C 99.7 2.6E-16 5.6E-21 140.1 10.2 99 16-159 13-118 (118)
55 cd04018 C2C_Ferlin C2 domain t 99.7 2.6E-16 5.7E-21 146.6 10.6 113 18-160 1-116 (151)
56 cd04027 C2B_Munc13 C2 domain s 99.7 8.4E-16 1.8E-20 138.9 13.6 114 18-177 2-127 (127)
57 cd08393 C2A_SLP-1_2 C2 domain 99.7 3.2E-16 6.9E-21 141.4 10.7 101 17-159 15-124 (125)
58 cd04030 C2C_KIAA1228 C2 domain 99.7 4.7E-16 1E-20 139.8 11.7 101 17-159 16-126 (127)
59 cd04041 C2A_fungal C2 domain f 99.7 3.6E-16 7.8E-21 137.9 10.2 98 17-159 1-106 (111)
60 cd04052 C2B_Tricalbin-like C2 99.7 7E-16 1.5E-20 136.1 11.9 98 79-182 12-111 (111)
61 cd04040 C2D_Tricalbin-like C2 99.7 1.1E-15 2.3E-20 135.1 12.8 105 19-165 1-107 (115)
62 cd04031 C2A_RIM1alpha C2 domai 99.7 8E-16 1.7E-20 137.8 11.5 100 17-159 16-124 (125)
63 PRK09428 pssA phosphatidylseri 99.7 1.4E-15 3.1E-20 164.5 15.6 168 210-461 23-195 (451)
64 cd04049 C2_putative_Elicitor-r 99.6 9.6E-16 2.1E-20 137.5 11.8 101 17-160 1-107 (124)
65 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.2E-15 2.7E-20 136.8 12.1 102 17-160 16-124 (125)
66 cd08521 C2A_SLP C2 domain firs 99.6 1.7E-15 3.8E-20 135.2 12.5 102 16-159 13-123 (123)
67 cd04039 C2_PSD C2 domain prese 99.6 1.2E-15 2.6E-20 134.4 11.2 98 17-153 1-101 (108)
68 cd08384 C2B_Rabphilin_Doc2 C2 99.6 3.2E-16 7E-21 142.3 7.8 108 17-168 13-128 (133)
69 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.1E-15 2.5E-20 138.5 10.8 101 17-159 15-127 (128)
70 cd04010 C2B_RasA3 C2 domain se 99.6 1.9E-15 4.2E-20 140.3 11.9 85 80-164 19-125 (148)
71 cd08402 C2B_Synaptotagmin-1 C2 99.6 3.2E-16 6.9E-21 143.1 6.5 111 15-169 13-131 (136)
72 cd08690 C2_Freud-1 C2 domain f 99.6 4.8E-15 1E-19 138.4 14.3 99 80-181 25-138 (155)
73 cd08405 C2B_Synaptotagmin-7 C2 99.6 7.2E-16 1.6E-20 140.7 8.6 108 17-168 15-130 (136)
74 cd08680 C2_Kibra C2 domain fou 99.6 1.6E-15 3.4E-20 136.8 10.6 102 16-159 13-124 (124)
75 cd08404 C2B_Synaptotagmin-4 C2 99.6 4.9E-16 1.1E-20 141.9 7.2 108 16-167 14-129 (136)
76 cd08403 C2B_Synaptotagmin-3-5- 99.6 5.4E-16 1.2E-20 141.2 7.4 109 16-168 13-129 (134)
77 cd08388 C2A_Synaptotagmin-4-11 99.6 5.1E-15 1.1E-19 134.2 13.4 102 17-159 16-126 (128)
78 cd00276 C2B_Synaptotagmin C2 d 99.6 7.8E-16 1.7E-20 139.3 8.1 108 17-168 14-129 (134)
79 cd08407 C2B_Synaptotagmin-13 C 99.6 4.3E-16 9.2E-21 143.0 6.1 112 16-169 14-133 (138)
80 cd04011 C2B_Ferlin C2 domain s 99.6 3.7E-15 8E-20 131.3 11.6 81 80-161 21-110 (111)
81 cd08676 C2A_Munc13-like C2 dom 99.6 3E-15 6.5E-20 139.7 11.1 98 16-159 27-153 (153)
82 cd08390 C2A_Synaptotagmin-15-1 99.6 4.8E-15 1E-19 132.5 11.8 102 16-159 13-121 (123)
83 cd08406 C2B_Synaptotagmin-12 C 99.6 8.7E-16 1.9E-20 140.7 6.9 110 16-169 14-131 (136)
84 cd08675 C2B_RasGAP C2 domain s 99.6 3.9E-15 8.5E-20 136.5 11.2 100 19-161 1-120 (137)
85 cd00275 C2_PLC_like C2 domain 99.6 1.3E-14 2.8E-19 130.3 13.8 116 18-179 3-127 (128)
86 cd04026 C2_PKC_alpha_gamma C2 99.6 6.6E-15 1.4E-19 133.4 11.7 108 13-163 9-123 (131)
87 PHA02820 phospholipase-D-like 99.6 1.2E-14 2.7E-19 156.5 15.1 145 241-461 25-171 (424)
88 cd04032 C2_Perforin C2 domain 99.6 9.5E-15 2.1E-19 132.3 11.3 89 17-149 28-119 (127)
89 cd08389 C2A_Synaptotagmin-14_1 99.6 1E-14 2.2E-19 131.5 11.0 100 17-159 16-122 (124)
90 cd04021 C2_E3_ubiquitin_ligase 99.6 2.7E-14 5.8E-19 128.8 13.7 97 80-177 22-124 (125)
91 cd04038 C2_ArfGAP C2 domain pr 99.6 1.3E-14 2.8E-19 134.4 11.8 94 16-153 1-95 (145)
92 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 7.3E-15 1.6E-19 138.6 10.3 103 15-159 25-136 (162)
93 cd08410 C2B_Synaptotagmin-17 C 99.6 5.8E-15 1.3E-19 134.9 8.4 109 17-168 14-130 (135)
94 cd08692 C2B_Tac2-N C2 domain s 99.6 7E-15 1.5E-19 133.9 7.9 110 16-168 13-130 (135)
95 cd08409 C2B_Synaptotagmin-15 C 99.6 4.6E-15 9.9E-20 136.0 6.8 108 17-167 15-130 (137)
96 cd00138 PLDc Phospholipase D. 99.5 9.2E-14 2E-18 131.5 15.0 145 241-459 20-169 (176)
97 cd04009 C2B_Munc13-like C2 dom 99.5 3.6E-14 7.9E-19 129.2 10.3 91 17-149 16-118 (133)
98 cd04048 C2A_Copine C2 domain f 99.5 4.6E-14 1E-18 126.1 10.4 80 80-159 21-112 (120)
99 KOG1028 Ca2+-dependent phospho 99.5 8.4E-14 1.8E-18 149.9 13.4 128 15-184 165-298 (421)
100 cd08408 C2B_Synaptotagmin-14_1 99.5 1.9E-14 4.1E-19 132.2 6.9 110 16-168 14-132 (138)
101 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.5E-13 3.3E-18 123.0 11.9 100 17-158 15-122 (123)
102 cd08691 C2_NEDL1-like C2 domai 99.5 3.7E-13 8.1E-18 123.5 14.1 114 19-177 3-136 (137)
103 cd08686 C2_ABR C2 domain in th 99.5 3.3E-13 7.1E-18 120.0 13.0 66 80-146 15-92 (118)
104 cd04037 C2E_Ferlin C2 domain f 99.5 2.9E-13 6.3E-18 121.9 11.4 88 19-148 2-92 (124)
105 PLN03200 cellulose synthase-in 99.5 1.3E-13 2.9E-18 167.3 11.3 119 15-181 1978-2101(2102)
106 PHA03003 palmytilated EEV memb 99.4 1.1E-12 2.3E-17 139.5 14.0 148 242-460 216-364 (369)
107 PRK12452 cardiolipin synthetas 99.4 1E-12 2.3E-17 144.8 10.6 150 231-461 333-482 (509)
108 cd04047 C2B_Copine C2 domain s 99.4 2.8E-12 6E-17 112.5 10.5 69 80-149 21-100 (110)
109 PF00168 C2: C2 domain; Inter 99.3 2.9E-12 6.3E-17 105.4 8.4 81 19-141 1-85 (85)
110 KOG2059 Ras GTPase-activating 99.3 1.8E-12 3.9E-17 141.1 9.1 126 17-186 5-131 (800)
111 KOG0696 Serine/threonine prote 99.3 4.3E-13 9.4E-18 139.0 3.8 104 17-163 180-290 (683)
112 PRK13912 nuclease NucT; Provis 99.3 5.4E-11 1.2E-15 113.9 16.0 141 241-459 32-174 (177)
113 cd00030 C2 C2 domain. The C2 d 99.3 2.2E-11 4.7E-16 101.6 10.4 80 80-159 20-102 (102)
114 smart00239 C2 Protein kinase C 99.3 3.3E-11 7.2E-16 101.2 10.4 74 80-153 21-98 (101)
115 PLN02223 phosphoinositide phos 99.2 3.5E-10 7.7E-15 123.0 14.1 96 80-179 435-536 (537)
116 KOG1028 Ca2+-dependent phospho 99.1 9.8E-11 2.1E-15 126.2 7.2 113 16-172 297-417 (421)
117 PF13091 PLDc_2: PLD-like doma 99.1 8.6E-10 1.9E-14 98.4 11.5 124 247-456 1-126 (126)
118 COG5038 Ca2+-dependent lipid-b 99.1 4.6E-10 1E-14 128.6 11.6 132 17-192 436-569 (1227)
119 PRK01642 cls cardiolipin synth 99.1 6.1E-10 1.3E-14 122.5 12.2 150 230-461 306-456 (483)
120 PLN02952 phosphoinositide phos 99.1 1.4E-09 3E-14 120.6 13.7 96 80-179 497-598 (599)
121 KOG1011 Neurotransmitter relea 99.0 2.8E-10 6E-15 122.5 7.1 119 15-179 293-423 (1283)
122 KOG1031 Predicted Ca2+-depende 99.0 6.2E-10 1.4E-14 118.7 9.1 170 15-240 1-185 (1169)
123 PLN02230 phosphoinositide phos 99.0 2.2E-09 4.8E-14 118.9 12.5 96 80-179 496-597 (598)
124 cd08689 C2_fungal_Pkc1p C2 dom 99.0 2.3E-09 5.1E-14 92.8 8.4 65 80-148 23-87 (109)
125 PLN02222 phosphoinositide phos 99.0 5.9E-09 1.3E-13 115.3 13.6 96 80-179 479-580 (581)
126 PLN02228 Phosphoinositide phos 98.9 7E-09 1.5E-13 114.4 13.5 99 80-182 458-563 (567)
127 PRK11263 cardiolipin synthase 98.9 5.5E-09 1.2E-13 112.5 11.9 135 241-457 205-340 (411)
128 PF00614 PLDc: Phospholipase D 98.9 3.5E-10 7.6E-15 74.8 1.5 27 363-397 2-28 (28)
129 KOG0169 Phosphoinositide-speci 98.9 6.4E-09 1.4E-13 115.5 11.1 98 80-181 641-745 (746)
130 cd08374 C2F_Ferlin C2 domain s 98.9 8E-09 1.7E-13 94.2 9.9 72 80-151 25-125 (133)
131 COG5038 Ca2+-dependent lipid-b 98.8 9.3E-09 2E-13 118.1 9.2 123 16-182 1039-1163(1227)
132 PHA02820 phospholipase-D-like 98.8 3.7E-08 8.1E-13 106.5 12.7 156 244-461 220-382 (424)
133 KOG1264 Phospholipase C [Lipid 98.5 3.6E-07 7.8E-12 101.3 10.4 102 80-185 1085-1194(1267)
134 KOG3603 Predicted phospholipas 98.4 4.8E-06 1E-10 87.7 14.8 169 230-461 268-441 (456)
135 PRK05443 polyphosphate kinase; 98.4 2.6E-06 5.7E-11 96.9 13.8 141 242-458 348-494 (691)
136 TIGR03705 poly_P_kin polyphosp 98.3 6.5E-06 1.4E-10 93.3 13.7 142 242-459 339-486 (672)
137 COG1502 Cls Phosphatidylserine 98.3 6E-06 1.3E-10 89.5 11.8 137 245-461 273-411 (438)
138 cd08683 C2_C2cd3 C2 domain fou 98.2 2.2E-06 4.8E-11 76.8 6.3 82 78-159 31-143 (143)
139 KOG1328 Synaptic vesicle prote 98.0 1.5E-06 3.3E-11 95.6 1.7 91 16-148 946-1048(1103)
140 KOG1328 Synaptic vesicle prote 98.0 1.7E-06 3.7E-11 95.2 1.1 91 93-185 178-306 (1103)
141 PRK09428 pssA phosphatidylseri 97.9 0.00012 2.6E-09 79.9 12.7 141 241-458 250-407 (451)
142 KOG2059 Ras GTPase-activating 97.9 4.2E-05 9E-10 84.7 8.7 106 79-184 150-280 (800)
143 smart00155 PLDc Phospholipase 97.4 9.6E-05 2.1E-09 49.0 2.4 24 364-395 3-26 (28)
144 KOG0905 Phosphoinositide 3-kin 97.4 0.00017 3.7E-09 83.5 5.1 105 13-159 1520-1633(1639)
145 PLN02964 phosphatidylserine de 97.3 0.00015 3.4E-09 81.7 4.1 86 80-165 68-157 (644)
146 KOG1013 Synaptic vesicle prote 97.2 0.00055 1.2E-08 70.3 5.6 101 17-161 233-341 (362)
147 PF13918 PLDc_3: PLD-like doma 97.1 0.0024 5.2E-08 60.9 8.8 69 227-305 71-140 (177)
148 PF07894 DUF1669: Protein of u 97.0 0.0035 7.6E-08 64.0 9.7 146 241-456 133-278 (284)
149 KOG1011 Neurotransmitter relea 96.9 0.0022 4.8E-08 70.5 7.8 80 80-159 1145-1235(1283)
150 KOG3837 Uncharacterized conser 96.9 0.00079 1.7E-08 70.8 4.0 97 80-179 388-502 (523)
151 KOG1326 Membrane-associated pr 96.9 0.00053 1.1E-08 78.7 2.9 87 18-146 614-703 (1105)
152 KOG2060 Rab3 effector RIM1 and 96.7 0.0022 4.7E-08 67.0 5.0 86 80-165 291-383 (405)
153 KOG1326 Membrane-associated pr 96.6 0.00054 1.2E-08 78.6 0.1 102 15-160 204-316 (1105)
154 TIGR03705 poly_P_kin polyphosp 96.5 0.0059 1.3E-07 69.7 7.6 143 232-461 494-642 (672)
155 PRK05443 polyphosphate kinase; 96.5 0.019 4E-07 66.0 11.5 134 241-461 512-650 (691)
156 KOG3603 Predicted phospholipas 96.4 0.12 2.6E-06 55.3 16.3 149 242-461 72-227 (456)
157 KOG1265 Phospholipase C [Lipid 96.4 0.012 2.6E-07 67.1 9.3 111 14-177 700-820 (1189)
158 KOG1327 Copine [Signal transdu 96.4 0.0039 8.4E-08 68.4 5.0 69 80-149 157-236 (529)
159 PF10358 NT-C2: N-terminal C2 96.4 0.094 2E-06 47.8 13.5 102 82-187 26-142 (143)
160 KOG1013 Synaptic vesicle prote 96.3 0.0014 2.9E-08 67.4 1.0 124 18-183 94-232 (362)
161 cd08684 C2A_Tac2-N C2 domain f 95.7 0.0089 1.9E-07 50.5 2.8 76 82-159 23-103 (103)
162 PLN03008 Phospholipase D delta 95.5 0.016 3.5E-07 66.8 5.1 75 231-305 555-633 (868)
163 PF11495 Regulator_TrmB: Archa 95.5 0.065 1.4E-06 53.5 8.9 50 241-307 9-58 (233)
164 PF12416 DUF3668: Cep120 prote 95.4 0.29 6.2E-06 51.7 13.7 103 81-184 19-136 (340)
165 PLN02352 phospholipase D epsil 95.4 0.049 1.1E-06 62.6 8.3 65 241-305 452-519 (758)
166 PLN02270 phospholipase D alpha 95.3 0.05 1.1E-06 62.8 8.0 65 241-305 498-569 (808)
167 PLN02866 phospholipase D 95.1 0.17 3.6E-06 60.0 11.8 82 207-305 705-792 (1068)
168 cd08398 C2_PI3K_class_I_alpha 94.4 0.27 5.7E-06 46.4 9.2 66 80-146 26-105 (158)
169 COG3886 Predicted HKD family n 94.3 0.28 6.1E-06 47.2 9.2 144 241-461 38-183 (198)
170 cd08687 C2_PKN-like C2 domain 94.3 0.28 6.1E-06 41.8 8.2 84 80-179 9-92 (98)
171 KOG1329 Phospholipase D1 [Lipi 94.1 0.17 3.7E-06 58.6 8.5 65 237-305 561-627 (887)
172 PF15627 CEP76-C2: CEP76 C2 do 93.4 0.62 1.4E-05 43.7 9.6 103 80-183 34-153 (156)
173 KOG1452 Predicted Rho GTPase-a 92.6 0.28 6E-06 50.5 6.4 96 79-182 73-169 (442)
174 cd08397 C2_PI3K_class_III C2 d 92.6 0.4 8.6E-06 45.2 7.2 69 79-147 29-107 (159)
175 cd08693 C2_PI3K_class_I_beta_d 92.5 0.77 1.7E-05 43.9 9.2 67 80-146 27-119 (173)
176 cd08380 C2_PI3K_like C2 domain 91.5 1 2.2E-05 42.0 8.5 68 80-147 28-107 (156)
177 PF15625 CC2D2AN-C2: CC2D2A N- 90.5 1.4 3.1E-05 41.8 8.6 69 80-148 37-107 (168)
178 PF00792 PI3K_C2: Phosphoinosi 89.3 1.4 3E-05 40.4 7.4 74 81-155 3-92 (142)
179 KOG0694 Serine/threonine prote 89.3 0.32 7E-06 54.9 3.6 96 80-184 28-125 (694)
180 cd04012 C2A_PI3K_class_II C2 d 89.0 3.2 6.9E-05 39.5 9.8 68 80-147 29-119 (171)
181 PF14429 DOCK-C2: C2 domain in 88.1 2.1 4.6E-05 41.0 8.0 55 92-146 59-120 (184)
182 PF11618 DUF3250: Protein of u 85.1 6 0.00013 34.8 8.5 93 83-179 2-104 (107)
183 cd08695 C2_Dock-B C2 domains f 81.7 2.9 6.4E-05 40.5 5.6 53 92-144 53-111 (189)
184 cd08399 C2_PI3K_class_I_gamma 81.7 11 0.00025 36.2 9.6 97 82-182 32-140 (178)
185 COG0855 Ppk Polyphosphate kina 80.4 11 0.00025 42.7 10.2 97 242-388 352-457 (696)
186 cd08694 C2_Dock-A C2 domains f 79.2 4.9 0.00011 39.2 6.2 54 91-144 52-113 (196)
187 PF13090 PP_kinase_C: Polyphos 79.1 3.7 8E-05 43.4 5.7 104 243-390 19-127 (352)
188 cd08679 C2_DOCK180_related C2 76.3 7.4 0.00016 37.2 6.5 52 94-146 55-115 (178)
189 smart00142 PI3K_C2 Phosphoinos 76.0 19 0.00041 31.0 8.4 50 80-129 32-90 (100)
190 KOG1327 Copine [Signal transdu 75.6 3.8 8.2E-05 45.6 4.8 85 91-178 40-130 (529)
191 cd05137 RasGAP_CLA2_BUD2 CLA2/ 75.1 3.5 7.6E-05 44.6 4.4 49 136-186 1-50 (395)
192 cd08696 C2_Dock-C C2 domains f 74.9 9.9 0.00022 36.6 7.0 54 91-144 53-116 (179)
193 cd08697 C2_Dock-D C2 domains f 72.9 18 0.0004 35.0 8.2 56 91-146 55-123 (185)
194 KOG4269 Rac GTPase-activating 72.5 2.2 4.8E-05 49.6 2.1 39 80-118 775-817 (1112)
195 KOG3964 Phosphatidylglycerolph 70.0 6.2 0.00013 42.2 4.6 131 240-400 37-172 (469)
196 PF06219 DUF1005: Protein of u 63.4 76 0.0016 34.5 11.1 111 79-194 35-178 (460)
197 PF14924 DUF4497: Protein of u 50.4 36 0.00078 29.9 5.3 57 121-180 30-104 (112)
198 PTZ00447 apical membrane antig 39.1 2.2E+02 0.0048 30.3 9.6 93 80-177 74-170 (508)
199 PF07162 B9-C2: Ciliary basal 38.2 3.5E+02 0.0075 25.5 10.5 66 93-158 40-117 (168)
200 PF14186 Aida_C2: Cytoskeletal 32.4 1.1E+02 0.0024 28.5 5.7 72 80-151 31-116 (147)
201 PF13289 SIR2_2: SIR2-like dom 28.8 2E+02 0.0042 25.4 6.8 65 242-341 74-142 (143)
202 cd00419 Ferrochelatase_C Ferro 27.2 4.1E+02 0.0089 24.1 8.5 77 213-305 18-97 (135)
203 PF13090 PP_kinase_C: Polyphos 26.2 2.1E+02 0.0046 30.5 7.2 106 284-459 212-318 (352)
204 COG0075 Serine-pyruvate aminot 26.2 88 0.0019 33.8 4.5 28 363-399 156-183 (383)
205 TIGR00230 sfsA sugar fermentat 24.7 1.8E+02 0.004 29.2 6.2 57 242-305 157-213 (232)
206 PF03494 Beta-APP: Beta-amyloi 22.1 68 0.0015 22.5 1.7 27 365-391 9-36 (39)
207 COG1489 SfsA DNA-binding prote 21.4 2.8E+02 0.0061 28.0 6.6 58 241-305 154-212 (235)
208 KOG3698 Hyaluronoglucosaminida 21.2 38 0.00082 38.1 0.5 90 237-341 57-155 (891)
209 PF15043 CNRIP1: CB1 cannabino 20.7 3.9E+02 0.0085 25.3 7.0 83 82-182 23-111 (161)
210 COG2044 Predicted peroxiredoxi 20.6 2.5E+02 0.0054 25.3 5.5 62 241-304 17-81 (120)
211 PF02635 DrsE: DsrE/DsrF-like 20.3 1.7E+02 0.0037 24.8 4.5 46 256-304 35-81 (122)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=1.1e-128 Score=1069.02 Aligned_cols=539 Identities=72% Similarity=1.221 Sum_probs=492.4
Q ss_pred CCCCceeEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEE
Q 008859 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (551)
Q Consensus 6 ~~~~~~~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvt 85 (551)
+.-+.+++||||+|+|||+||++|||||++++++++||..+..|.+.+.+.......++...+++++++++.++|||||+
T Consensus 3 ~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~ 82 (868)
T PLN03008 3 EKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVT 82 (868)
T ss_pred cccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEE
Confidence 55678899999999999999999999999999999999987777655432211222222223356778889999999999
Q ss_pred EEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859 86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (551)
Q Consensus 86 V~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk 165 (551)
|.|++++++||+|++|+.||+|||+|+|+|+|+.+.|+|+|||+|.+|+++||++.||++++..|+.+++|++|++..++
T Consensus 83 I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 83 VVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGK 162 (868)
T ss_pred EEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHH
Q 008859 166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245 (551)
Q Consensus 166 p~k~~G~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~ 245 (551)
|++.+++|+|+|+|+|++++++|.+||+++++|+|||.+|||+|+||+||||||||+++||+|.|.|.+|+.|++++|||
T Consensus 163 p~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwe 242 (868)
T PLN03008 163 PPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWE 242 (868)
T ss_pred CCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccC
Q 008859 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT 325 (551)
Q Consensus 246 ~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t 325 (551)
||++||++|||+|||++|+++|+++|+|++. .|.+.+.+|++|||+||+|||+|+|||||+.+|+..+++++.|+|.|
T Consensus 243 di~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~--~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t 320 (868)
T PLN03008 243 DICYAISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT 320 (868)
T ss_pred HHHHHHHhhhheEEEeceeecceeEEecCCC--CCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence 9999999999999999999999999999986 34445789999999999999999999999999998788999999999
Q ss_pred CcHHHHhHhcCCCcEEEecCCCCcccccccccc-----------cccccccCccceEEEccCCCCCCcceEEEEceeecc
Q 008859 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (551)
Q Consensus 326 ~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~-----------~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~ 394 (551)
||++|+++|++++|+|++||++++.+.+++++. ..+++|+||||+||||+++++++|+++|||||+|||
T Consensus 321 hdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc 400 (868)
T PLN03008 321 HDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLC 400 (868)
T ss_pred ccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceecc
Confidence 999999999999999999999999989998873 556899999999999998888899999999999999
Q ss_pred ccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCCcchhcccccccC
Q 008859 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474 (551)
Q Consensus 395 ~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~~~~~~~~~~~~~ 474 (551)
+|||||+.|++|++|+++|++||+||.+..+.++|++||||+|++|+||||++|+.+|++||+++++++.+..+.++...
T Consensus 401 ~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~ 480 (868)
T PLN03008 401 DGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTH 480 (868)
T ss_pred CCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccc
Confidence 99999999999999999999999999998888889999999999999999999999999999999998666666777889
Q ss_pred CCcccccccCCCCcccCCcccccCCCccccCCCCCccccccCCCCCceEEEEEeeeCCCCcCCCCCCHHHHh
Q 008859 475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDID 546 (551)
Q Consensus 475 ~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~s~~~~p~~~~~a~ 546 (551)
|++|.|++++++++++.|+..+.++.+..+|++++.++..+++|+++|+||||||||+||++|||+.+++|+
T Consensus 481 ~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~ 552 (868)
T PLN03008 481 WQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAE 552 (868)
T ss_pred cccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhh
Confidence 999999999999999999876666666667766665666667999999999999999999999998655543
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=8.6e-117 Score=975.25 Aligned_cols=473 Identities=45% Similarity=0.814 Sum_probs=428.4
Q ss_pred EEEeeEEEEEEEEeecCCCCCCCchhhhhccccccc-CCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 008859 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDV-CKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (551)
Q Consensus 13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~ 91 (551)
+||||+|+|+|+||++||||++ ++.+++++..+.. |.. ..++|||||||+|+++
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~------------------------~~~~~~~y~tv~~~~a 58 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGV------------------------GKGESQLYATIDLEKA 58 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccC------------------------CCCCCCceEEEEeCCc
Confidence 4899999999999999999866 5556655554321 111 1136999999999999
Q ss_pred eeEEeeecCC-CCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCC
Q 008859 92 TVARTRVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170 (551)
Q Consensus 92 ~v~rTrvi~n-s~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~ 170 (551)
+++||||++| +.||+|+|+|+|+|||++++|+|+|||+|.+|+++||+++||+++|++|+.+++||+|++.+|||++.+
T Consensus 59 ~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~ 138 (808)
T PLN02270 59 RVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGG 138 (808)
T ss_pred EEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCC
Confidence 9999999999 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHH
Q 008859 171 ASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHA 250 (551)
Q Consensus 171 G~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~a 250 (551)
.+|+|+|+|+|++.+++|.+||++ ++|+|||.+|||+|+||+||||||||++++|+|.|+|.+|+.|++.+||||+++|
T Consensus 139 ~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~A 217 (808)
T PLN02270 139 SKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDA 217 (808)
T ss_pred CEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHH
Confidence 999999999999999999999977 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHH
Q 008859 251 ISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEET 330 (551)
Q Consensus 251 I~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~ 330 (551)
|.+|||+|||++|+|+++++|+|++.++.|. +..+|++||++||++||+|+||+||+.+|.. .++..|+|.||++++
T Consensus 218 I~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~-~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~--~~k~~g~m~thd~~t 294 (808)
T PLN02270 218 ITNAKHLIYITGWSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVD--LLKKDGLMATHDEET 294 (808)
T ss_pred HHhhhcEEEEEEeecCCCceEecCCCCCCCC-CcchHHHHHHHHhcCCCEEEEEEEcCcccch--hhccccccccCHHHH
Confidence 9999999999999999999999987765555 4689999999999999999999999998764 356789999999999
Q ss_pred HhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCC---CCcceEEEEceeeccccccCCCcccccc
Q 008859 331 KKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG---NNRKITAFIGGIDLCDGRYDTPEHRLFR 407 (551)
Q Consensus 331 ~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~---~~~~~vafvGG~dL~~~R~Dt~~H~l~~ 407 (551)
+++|++++|+|+|||++|+.+.+++++...++.++||||+||||+.+++ ++|+++|||||+|||+|||||++|++|+
T Consensus 295 ~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~ 374 (808)
T PLN02270 295 ENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFR 374 (808)
T ss_pred HHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccc
Confidence 9999999999999999999888888877888999999999999998543 5899999999999999999999999999
Q ss_pred cccccccCCCCCCCCCC---CCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCCcchhcccccccCCCcccccccC
Q 008859 408 DLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG 484 (551)
Q Consensus 408 ~l~~~~~~d~~~~~~~~---~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 484 (551)
+|+|+|++||+||+|.. ++++||+||||+|++|+||||++|+.+|++||+.+++. ++++.++
T Consensus 375 ~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~---------------~ll~~~~ 439 (808)
T PLN02270 375 TLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGK---------------DILVQLR 439 (808)
T ss_pred cccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCc---------------cchhhhc
Confidence 99999999999999973 68889999999999999999999999999999998875 4566677
Q ss_pred CCCcccCCcccccCCCccccCCCCCccccccCCCCCceEEEEEeeeCCCCcCCCCCCHHHHh
Q 008859 485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDID 546 (551)
Q Consensus 485 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~s~~~~p~~~~~a~ 546 (551)
++++++.|+. +. ..++++++|+||||||||+++++|||+.+++|+
T Consensus 440 ~~~~~~~P~~----------------~~-~~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~ 484 (808)
T PLN02270 440 ELEDVIIPPS----------------PV-MFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAA 484 (808)
T ss_pred ccccccCCCC----------------cc-cCCCcCCccccceeecccchhhccCCCCcchhh
Confidence 7777765552 11 125778999999999999999999999877663
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=3.9e-104 Score=873.44 Aligned_cols=443 Identities=40% Similarity=0.713 Sum_probs=391.4
Q ss_pred EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeee
Q 008859 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (551)
Q Consensus 14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v 93 (551)
||||+|++||+||+ | ++++|..++.|... .||||||+++++++
T Consensus 7 ~lhg~l~~~i~~~~--~--------~~~~~~~~~~~~~~---------------------------~~~y~tv~~~~~~v 49 (758)
T PLN02352 7 FFHGTLEATIFDAT--P--------YTPPFPFNCIFLNG---------------------------KATYVTIKIGNKKV 49 (758)
T ss_pred ccccceEEEEEEee--e--------hhhcccccccccCC---------------------------CCceEEEEeCCcEE
Confidence 79999999999999 2 44555544333322 48999999999999
Q ss_pred EEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCCCceeEEEEeecccccccce-eeeEEEccCCCCCCCCCCc
Q 008859 94 ARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWYDIIAPSGSPPKPGA 171 (551)
Q Consensus 94 ~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~-i~~w~~Ll~~~gkp~k~~G 171 (551)
+|| +|+.||+|+|+|+|+|||++ ++|+|+||| |+++||+++||+++|++|+. +++||+|++.+|||++. .
T Consensus 50 ~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~ 121 (758)
T PLN02352 50 AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-L 121 (758)
T ss_pred ecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-C
Confidence 999 77789999999999999999 799999999 69999999999999999976 99999999999999965 8
Q ss_pred eEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHH
Q 008859 172 SIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAI 251 (551)
Q Consensus 172 ~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI 251 (551)
+|+|+|+|+|++++++|.+||++ ++|+|||.++||+|+||+||||||||++++|+|.|.| .|.+++||++|++||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI 196 (758)
T PLN02352 122 KLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAI 196 (758)
T ss_pred EEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHH
Confidence 99999999999999999999987 7999999999999999999999999999999999998 677799999999999
Q ss_pred HhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHH
Q 008859 252 SEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETK 331 (551)
Q Consensus 252 ~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~ 331 (551)
++|||+|||++|+|+++++|+|++.++.|.+.+.+|+++|++||+|||+|+||+||+.+|.. .++..|+|.+|+++++
T Consensus 197 ~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~--~~~~~g~m~th~~~~~ 274 (758)
T PLN02352 197 EGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLP--IIKNKGVMGTHDEDAF 274 (758)
T ss_pred HhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCccc--ccccccccccchHHHH
Confidence 99999999999999999999998866555455799999999999999999999999998874 3577899999999999
Q ss_pred hHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCC--CCcceEEEEceeeccccccCCCcccccccc
Q 008859 332 KFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG--NNRKITAFIGGIDLCDGRYDTPEHRLFRDL 409 (551)
Q Consensus 332 ~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~--~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l 409 (551)
++|++++|+|++||+.+. ..++.++||||+||||+.+++ ++|+++|||||||||+|||||++|++|++|
T Consensus 275 ~~f~h~~V~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l 345 (758)
T PLN02352 275 AYFKHTKVVCKLCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTL 345 (758)
T ss_pred hhccCCceEEeecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCccccc
Confidence 999999999999998753 235789999999999998543 689999999999999999999999999999
Q ss_pred ccc-ccCCCCCCCCC---CCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCCcchhcccccccCCCcccccccCC
Q 008859 410 DTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGR 485 (551)
Q Consensus 410 ~~~-~~~d~~~~~~~---~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (551)
++. |++||+|++|. .+.++||+||||+||+|+||||+||+.||+||||+++++ +.|+....
T Consensus 346 ~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~---------------~~l~p~~~ 410 (758)
T PLN02352 346 NTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNP---------------SVLVPTSS 410 (758)
T ss_pred ccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCc---------------cccCCccc
Confidence 987 56999999998 367889999999999999999999999999999998875 33344444
Q ss_pred CCcccCCcccccCCCccccCCCCCccccccCCCCCceEEEEEeeeCCCCcCCCCC--------------CHHHHhhhccC
Q 008859 486 ISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPK--------------SIEDIDDQVYM 551 (551)
Q Consensus 486 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~s~~~~p~--------------~~~~a~~~~~~ 551 (551)
+++++.++ + .+.++.++|+||||||+|.||+.+||+ .|+.|++.|||
T Consensus 411 ~~~~~~~p------------~-------~~~~~~~~w~VQv~RSid~~sa~~~P~~~~~erSIq~AYi~AIr~AqhfIYI 471 (758)
T PLN02352 411 IRNLVHQP------------G-------SSESNNRNWKVQVYRSIDHVSASHMPRNLPVERSIHEAYVEAIRRAERFIYI 471 (758)
T ss_pred ccccccCC------------C-------CCcccCCcccceEEEecCccccccCCCCCchhhHHHHHHHHHHHhhhhEEEE
Confidence 44444322 1 012467899999999999999999996 57788899997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=6.9e-91 Score=764.96 Aligned_cols=472 Identities=40% Similarity=0.652 Sum_probs=412.9
Q ss_pred CCCCceeEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcC-cccc-cccccccCccCCCcE
Q 008859 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDG-VRHT-SKIIRKSKIITSDPY 83 (551)
Q Consensus 6 ~~~~~~~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~tsDpY 83 (551)
.+++..+.|+||+|+++|+++..+++|+++..+.+..+..+..|....- .| .+++. ..+. ++....++.+++++|
T Consensus 65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~p~~~~~~~~~~~~~~~~~e~Y 141 (887)
T KOG1329|consen 65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNI-ND--NHDEKPSGPRSSLNSSMEKRKTLENY 141 (887)
T ss_pred CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccc-cc--cccccCCCccCCcccchhhhhhccch
Confidence 4467778899999999999999999999998877766665543211110 00 00111 1111 111123455678999
Q ss_pred EEEEECCeeeEEeeecCCC-CCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccC
Q 008859 84 VTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (551)
Q Consensus 84 vtV~l~~~~v~rTrvi~ns-~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~ 161 (551)
+++.+..+++++|+++.+. .+|.|.++|.+.++|....++|+|++.+.+| +.++|.+++|+..+.+|..+.+|+++++
T Consensus 142 lt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~ 221 (887)
T KOG1329|consen 142 LTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILD 221 (887)
T ss_pred heeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeec
Confidence 9999999999999999986 9999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCC-CCCC
Q 008859 162 PSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKP 240 (551)
Q Consensus 162 ~~gkp~k~~G~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~-~y~~ 240 (551)
.++++...+..+.++++|++.+.+..|..|+.+++.|.+++.+++++++||.|++|||+|+.++|.|.+.+.+|+ .|.+
T Consensus 222 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~ 301 (887)
T KOG1329|consen 222 NDGKPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDG 301 (887)
T ss_pred cCCccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEch
Confidence 999999888889999999999999999999999999999999999999999999999999999999999999999 7777
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
..||+++++||++|||.|||+|||++|+++|+|++..+ .+.+|+++||+||++||+|+|||||+.++...
T Consensus 302 ~~~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~------ 371 (887)
T KOG1329|consen 302 KKYWEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG------ 371 (887)
T ss_pred hhHHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc------
Confidence 99999999999999999999999999999999988733 46999999999999999999999999998753
Q ss_pred CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (551)
Q Consensus 321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt 400 (551)
.+++++++..+++|++|+|++||+++.++. .++|+||||+||||.. +|||||+|||+|||||
T Consensus 372 --i~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT 433 (887)
T KOG1329|consen 372 --INSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDT 433 (887)
T ss_pred --cCchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCC
Confidence 237899999999999999999999987532 4689999999999998 9999999999999999
Q ss_pred CcccccccccccccCCCCCCCCC-----CCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCCcchhcccccccCC
Q 008859 401 PEHRLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW 475 (551)
Q Consensus 401 ~~H~l~~~l~~~~~~d~~~~~~~-----~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~~~~~~~~~~~~~~ 475 (551)
++|+||++|++.|++|||||+|. ++.++|||||||+||+|.||+|+||++||+||||++...+ ..+
T Consensus 434 ~eH~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K---------~~~ 504 (887)
T KOG1329|consen 434 PEHPLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREK---------KPY 504 (887)
T ss_pred ccccccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhccc---------CCC
Confidence 99999999999999999999997 6789999999999999999999999999999999998752 011
Q ss_pred CcccccccCCCCcccCCcccccCCCccccCCCCCccccccCCCCCceEEEEEeeeCCCCcCC
Q 008859 476 RDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKG 537 (551)
Q Consensus 476 ~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~s~~~ 537 (551)
++.++.+..+++++.|+. + .++|++.|+||||||||++|+.|
T Consensus 505 -~~~~p~L~p~~~~~~~~~----------------~---~~~~~e~~~~q~f~si~~gs~~~ 546 (887)
T KOG1329|consen 505 -DDSLPLLLPISDITGPSE----------------P---NEEDPESWHVQVFRSIDGGSVAG 546 (887)
T ss_pred -CccceeecChhhhcCCCC----------------c---cccccccccccceeeccCCcccc
Confidence 566666667777666662 1 37899999999999999999877
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=1.5e-45 Score=415.11 Aligned_cols=209 Identities=35% Similarity=0.604 Sum_probs=168.9
Q ss_pred CCCCCcc----cCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCC
Q 008859 203 NAYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP 278 (551)
Q Consensus 203 ~s~~p~r----~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~ 278 (551)
.+|.|.| .||.+++|.|| +++|++|++||++||++|||++|+|+|+++|+|++.
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~-- 378 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH-- 378 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC--
Confidence 5788988 69999999998 788999999999999999999999999999998542
Q ss_pred CCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHh--cCCCcEEEecCCCCcccccccc
Q 008859 279 LPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFK 356 (551)
Q Consensus 279 ~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~--~~~~v~~~l~p~~~~~~~~~~~ 356 (551)
.+.+.+|.++|++||++||+||||+||..++... +. ...+.+.+ .++||+|...|.+ . .
T Consensus 379 --D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~--~~--------S~~~k~~L~~lh~gI~V~r~P~~---~-~--- 439 (1068)
T PLN02866 379 --DHESSRLDSLLEAKAKQGVQIYILLYKEVALALK--IN--------SVYSKRRLLGIHENVKVLRYPDH---F-S--- 439 (1068)
T ss_pred --CchHHHHHHHHHHHHHCCCEEEEEEECccccccc--cC--------chhhHHHHHHhCCCeEEEecCcc---c-c---
Confidence 1246899999999999999999999999764221 00 11222222 3689998744322 1 0
Q ss_pred cccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccc-cCCCCCCCCC------------
Q 008859 357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVF-KDDFHNPTYP------------ 423 (551)
Q Consensus 357 ~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~-~~d~~~~~~~------------ 423 (551)
...+++|||||+||||+. +||+||+|||.|||||++|++.+.-...+ ++||.||...
T Consensus 440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ 509 (1068)
T PLN02866 440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE 509 (1068)
T ss_pred --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence 124689999999999998 99999999999999999999865333333 5799888642
Q ss_pred -CCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCC
Q 008859 424 -IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKL 462 (551)
Q Consensus 424 -~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~ 462 (551)
++...||+||||+||+|+||||.||+++|++|||.+++.
T Consensus 510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~ 549 (1068)
T PLN02866 510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRN 549 (1068)
T ss_pred cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcc
Confidence 345678899999999999999999999999999998875
No 6
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.97 E-value=3.1e-30 Score=242.07 Aligned_cols=157 Identities=50% Similarity=0.810 Sum_probs=137.0
Q ss_pred eEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 008859 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (551)
Q Consensus 12 ~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~ 91 (551)
.+||||+|+|+|+||++||+||++++.+++||+++..|...... ..+.+.+...+++||||+|++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~g~sDPYv~V~l~~~ 69 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLK------------RPSSHRHVGKITSDPYATVDLAGA 69 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccc------------cccccccCCCCCcCeEEEEEECCe
Confidence 46899999999999999999999999999999987655433210 000112234566999999999998
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCc
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G 171 (551)
+++||++++++.||+|||+|.|+++++...|+|+|||++.+++++||++.||++++..|+.++.|++|.+..+++.+..+
T Consensus 70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~ 149 (158)
T cd04015 70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA 149 (158)
T ss_pred EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence 88999999999999999999999999988999999999999999999999999999999999999999999999998899
Q ss_pred eEEEEeeee
Q 008859 172 SIQLELKFT 180 (551)
Q Consensus 172 ~L~lsl~f~ 180 (551)
+|+|+++|+
T Consensus 150 ~l~v~~~f~ 158 (158)
T cd04015 150 KIRVSLQFT 158 (158)
T ss_pred EEEEEEEEC
Confidence 999999995
No 7
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.96 E-value=2.6e-28 Score=267.85 Aligned_cols=172 Identities=22% Similarity=0.332 Sum_probs=139.2
Q ss_pred CCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCC
Q 008859 204 AYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG 283 (551)
Q Consensus 204 s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~ 283 (551)
+.+|...||+++++.+| ++.|++++++|++||++|+|+.|++ +++. .
T Consensus 132 ~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~-------~~d~------~ 178 (509)
T PRK12452 132 GGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIY-------KSDE------I 178 (509)
T ss_pred cCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEE-------eCCc------H
Confidence 55788999999999998 7899999999999999999999965 4443 3
Q ss_pred chhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCccccccccccccccc
Q 008859 284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTI 363 (551)
Q Consensus 284 ~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~ 363 (551)
+..+.++|++||+|||+||||+ |+.||.. ......+.++++||+|..+ +|.. ..++ ..+.+
T Consensus 179 g~~i~~aL~~aa~rGV~VRiL~-D~~Gs~~------------~~~~~~~~L~~aGi~v~~f--~P~~-~~~~---~~~~n 239 (509)
T PRK12452 179 GTKVRDALIKKAKDGVIVRFLY-DGLGSNT------------LRRRFLQPMKEAGIEIVEF--DPIF-SAWL---LETVN 239 (509)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-ECCCCCC------------CCHHHHHHHHhCCeEEEEe--cCcc-cccc---ccccc
Confidence 5899999999999999999995 9998853 1245667788999998753 2221 1111 23468
Q ss_pred ccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH
Q 008859 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP 443 (551)
Q Consensus 364 ~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP 443 (551)
+|||||++|||++ +||+||+|+++. |... .....+|||+|++++||
T Consensus 240 ~RnHRKi~VIDg~--------ia~~GG~Ni~d~-y~~~-------------------------~~~~~~WrD~~~~i~Gp 285 (509)
T PRK12452 240 YRNHRKIVIVDGE--------IGFTGGLNVGDE-YLGR-------------------------SKKFPVWRDSHLKVEGK 285 (509)
T ss_pred CCCCCeEEEEcCC--------EEEeCCcccchh-hcCC-------------------------CCCCCCceEEEEEEECH
Confidence 9999999999998 999999999983 4321 11246899999999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 008859 444 AAYDVLINFEQRWRKATK 461 (551)
Q Consensus 444 aa~dv~~~F~~rW~~~~~ 461 (551)
+|+++...|.++|+.+++
T Consensus 286 ~V~~l~~~F~~dW~~~~~ 303 (509)
T PRK12452 286 ALYKLQAIFLEDWLYASS 303 (509)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999998765
No 8
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.95 E-value=2.2e-27 Score=259.69 Aligned_cols=176 Identities=23% Similarity=0.310 Sum_probs=139.7
Q ss_pred CCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCC
Q 008859 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (551)
Q Consensus 203 ~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g 282 (551)
.+.+|...||+|++|.+| ++.|++|+++|++||++|+|+.|++ +++.
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~-------~~d~------ 153 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIW-------RPDG------ 153 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEE-------ccCC------
Confidence 355788899999999998 7899999999999999999999954 4443
Q ss_pred CchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEec-CCCCccccccccccccc
Q 008859 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA-PRYASSKLSYFKQQIVG 361 (551)
Q Consensus 283 ~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~-p~~~~~~~~~~~~~~~~ 361 (551)
.+.++.++|++||+|||+||||+ |+.||... ......+.++..||++..+ |... ..++ ..+
T Consensus 154 ~g~~i~~aL~~aa~rGV~VriL~-D~~Gs~~~-----------~~~~~~~~L~~~Gi~v~~~~p~~~---~~~~---~~~ 215 (483)
T PRK01642 154 LGDQVAEALIAAAKRGVRVRLLY-DSIGSFAF-----------FRSPYPEELRNAGVEVVEFLKVNL---GRVF---RRR 215 (483)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----------CcHHHHHHHHHCCCEEEEecCCCc---cccc---ccc
Confidence 35899999999999999999995 99987641 1233566788899998754 3211 1111 235
Q ss_pred ccccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEe
Q 008859 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (551)
Q Consensus 362 ~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~ 441 (551)
.++|||||++|||++ +||+||+|+++.+|-+. .....+|||+|++++
T Consensus 216 ~n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~-------------------------~~~~~~w~D~~~~i~ 262 (483)
T PRK01642 216 LDLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ-------------------------DPGVGQWRDTHVRIE 262 (483)
T ss_pred cccccCceEEEEcCC--------EEEeCCcccCCHHHhCC-------------------------CCCCCCcEEEEEEEE
Confidence 688999999999998 99999999998333221 112468999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCC
Q 008859 442 GPAAYDVLINFEQRWRKATKL 462 (551)
Q Consensus 442 GPaa~dv~~~F~~rW~~~~~~ 462 (551)
||+|+++...|.++|+.+++.
T Consensus 263 Gp~v~~l~~~F~~dW~~~~~~ 283 (483)
T PRK01642 263 GPVVTALQLIFAEDWEWETGE 283 (483)
T ss_pred cHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999987653
No 9
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.91 E-value=9e-24 Score=226.11 Aligned_cols=167 Identities=22% Similarity=0.310 Sum_probs=131.1
Q ss_pred CcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchh
Q 008859 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (551)
Q Consensus 207 p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~ 286 (551)
+.+.||+|+++.|| ++.|++++++|++||++|+|++|++. ++. .+..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~------~g~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILF-------EDK------VGKQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEe-------cCc------hHHH
Confidence 56789999999998 78999999999999999999999653 232 2589
Q ss_pred HHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccC
Q 008859 287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTH 366 (551)
Q Consensus 287 l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~h 366 (551)
|.++|++||+|||+|+||+ |..+|... +....+.|.++||++... .|.. .++ ......+.++
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~--~p~~--~~~-~~~~~~~~R~ 111 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYF--DPRP--RLL-GMRTNLFRRM 111 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEe--CCcc--ccc-ccccccccCC
Confidence 9999999999999999996 98876531 345677788999998753 1211 111 1112234599
Q ss_pred ccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHH
Q 008859 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (551)
Q Consensus 367 HqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~ 446 (551)
|+|++|||++ +||+||+|+++.++. ++ ...+|+|+|++|+||+|.
T Consensus 112 HrKiiVIDg~--------~a~vGg~N~~~~~~~----------------~~-----------g~~~w~D~~v~i~Gp~V~ 156 (411)
T PRK11263 112 HRKIVVIDGR--------IAFVGGINYSADHLS----------------DY-----------GPEAKQDYAVEVEGPVVA 156 (411)
T ss_pred cceEEEEcCC--------EEEEcCeEchHhhcc----------------cc-----------CCCCceEEEEEEECHHHH
Confidence 9999999998 999999999973332 11 134799999999999999
Q ss_pred HHHHHHHHHHHhh
Q 008859 447 DVLINFEQRWRKA 459 (551)
Q Consensus 447 dv~~~F~~rW~~~ 459 (551)
++...|.+.|...
T Consensus 157 ~l~~~f~~~w~~~ 169 (411)
T PRK11263 157 DIHQFELEALPGQ 169 (411)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999743
No 10
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.91 E-value=1.3e-23 Score=193.90 Aligned_cols=127 Identities=24% Similarity=0.478 Sum_probs=114.7
Q ss_pred EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee
Q 008859 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (551)
Q Consensus 13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~ 92 (551)
..+-..|.|+|+||++||.+ .+|||+|.|++++
T Consensus 7 ~R~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~~ 39 (146)
T cd04013 7 RRTENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKTL 39 (146)
T ss_pred eEEEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCEE
Confidence 35678999999999999853 4799999999999
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEE-ecCCC----CCceeEEEEeecccccccceeeeEEEccCCCCCC-
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVF----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP- 166 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vk-d~d~~----g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp- 166 (551)
++||+++.++.||.|+|+|+|+++|+.+.|+|+|+ +++.. ++++||++.||++++..|+.+++||||++.++++
T Consensus 40 vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~ 119 (146)
T cd04013 40 YARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGK 119 (146)
T ss_pred EEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCc
Confidence 99999999999999999999999999999999995 45544 5799999999999999999999999999999887
Q ss_pred ------CCCCceEEEEeeeeccCCCC
Q 008859 167 ------PKPGASIQLELKFTPCDKNP 186 (551)
Q Consensus 167 ------~k~~G~L~lsl~f~p~~~~~ 186 (551)
.+..++|+|+++|.++...|
T Consensus 120 ~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 120 SGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred cccccccCCCCEEEEEEEEEEeeeCC
Confidence 67789999999999987665
No 11
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.90 E-value=7.6e-23 Score=183.57 Aligned_cols=117 Identities=23% Similarity=0.491 Sum_probs=104.7
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|++.+ ++. +||||+|.++++++ ||
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~~-kT 37 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAVY-ET 37 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEEE-Ee
Confidence 89999999999998776 443 99999999998875 99
Q ss_pred eecCC-CCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecc-cccccceeeeEEEccCCCCCCCCCCceE
Q 008859 97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI 173 (551)
Q Consensus 97 rvi~n-s~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~-~l~~g~~i~~w~~Ll~~~gkp~k~~G~L 173 (551)
+|+.+ +.||+|||+|.|+|++....|.|+|+|.|.++ +++||.+.||+. .+..|+.++.||+|.+.++++ ..|+|
T Consensus 38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i 115 (121)
T cd04016 38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMI 115 (121)
T ss_pred EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEE
Confidence 99876 89999999999999988788999999999998 799999999995 688898899999997766654 56999
Q ss_pred EEEeee
Q 008859 174 QLELKF 179 (551)
Q Consensus 174 ~lsl~f 179 (551)
+|+|+|
T Consensus 116 ~l~l~y 121 (121)
T cd04016 116 NLVFSY 121 (121)
T ss_pred EEEEeC
Confidence 999987
No 12
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.85 E-value=8.2e-21 Score=171.57 Aligned_cols=114 Identities=24% Similarity=0.374 Sum_probs=103.0
Q ss_pred EEEEEEEeec---CCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859 19 LDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (551)
Q Consensus 19 L~v~I~eA~~---L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r 95 (551)
|+|+|++|++ |+.+|..+. +||||+|.+++++ .|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~r 38 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-VR 38 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-eE
Confidence 8999999999 777665543 9999999998876 59
Q ss_pred eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCC-------CCceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (551)
Q Consensus 96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~-------g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k 168 (551)
|++++++.||+|||+|.|++.++...|+|+|||.+.+ ++++||++.||++.+..+..++.||+|.+.++++.+
T Consensus 39 Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~ 118 (126)
T cd08379 39 TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118 (126)
T ss_pred cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCcc
Confidence 9999999999999999999999888999999999987 699999999999999999999999999888777788
Q ss_pred CCceEEE
Q 008859 169 PGASIQL 175 (551)
Q Consensus 169 ~~G~L~l 175 (551)
..|+|++
T Consensus 119 ~~g~l~~ 125 (126)
T cd08379 119 KMGELEC 125 (126)
T ss_pred CCcEEEe
Confidence 8899875
No 13
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=2.1e-20 Score=168.50 Aligned_cols=117 Identities=21% Similarity=0.493 Sum_probs=102.2
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv 98 (551)
+.|+|++|++|++++..+. +||||+|.+.+.+ .||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v 37 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV 37 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence 4799999999998876443 8999999998766 69999
Q ss_pred cCCCCCCeEeeEEEEeecC------CCCeEEEEEEecCCCC-CceeEEEEeeccccc--ccceeeeEEEccCCCCCCCCC
Q 008859 99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP 169 (551)
Q Consensus 99 i~ns~nP~WnE~F~i~vah------~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~--~g~~i~~w~~Ll~~~gkp~k~ 169 (551)
++++.||+|||+|.|.+.. ....|.|+|+|.+.++ +++||++.|+++++. .+.....||+|.+..+++.+.
T Consensus 38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence 9999999999999999877 3567999999999998 899999999999988 677789999997766666667
Q ss_pred CceEEEEee
Q 008859 170 GASIQLELK 178 (551)
Q Consensus 170 ~G~L~lsl~ 178 (551)
.|+|+|++|
T Consensus 118 ~Gei~l~~~ 126 (126)
T cd08682 118 RGEIEVDIQ 126 (126)
T ss_pred cceEEEEeC
Confidence 899999885
No 14
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=4.5e-20 Score=165.07 Aligned_cols=120 Identities=26% Similarity=0.391 Sum_probs=107.8
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr 97 (551)
.|.|+|++|++|+++|..+. +||||++.+.+..+.||+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~ 38 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK 38 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence 38899999999998876543 899999999887789999
Q ss_pred ecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEEE
Q 008859 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (551)
Q Consensus 98 vi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~ls 176 (551)
++.++.||+|||+|.|.+......|.|+|||.+.++ +++||.+.+++.++..++..+.|++|.+..+. +..|+|+|.
T Consensus 39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~ 116 (121)
T cd04042 39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLV 116 (121)
T ss_pred eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEE
Confidence 999999999999999999887788999999999996 89999999999999999999999999766552 467999999
Q ss_pred eeeec
Q 008859 177 LKFTP 181 (551)
Q Consensus 177 l~f~p 181 (551)
++|+|
T Consensus 117 ~~~~~ 121 (121)
T cd04042 117 VTLTP 121 (121)
T ss_pred EEECC
Confidence 99976
No 15
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.83 E-value=1.4e-19 Score=163.38 Aligned_cols=121 Identities=21% Similarity=0.412 Sum_probs=103.9
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r 95 (551)
+..|.|+|++|++|+.++ ++||||+|.+.+..++|
T Consensus 3 ~~~L~V~Vi~A~~L~~~~---------------------------------------------~~DPYv~v~l~~~~~~k 37 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH---------------------------------------------VPHPYCVISLNEVKVAR 37 (126)
T ss_pred eeEEEEEEEEeeCCCCCC---------------------------------------------CCCeeEEEEECCEeEEE
Confidence 467999999999998632 28999999999888889
Q ss_pred eeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceE
Q 008859 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (551)
Q Consensus 96 Trvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L 173 (551)
|++. ++.||.|||+|.|.+..+. ..++|.|+|.+.++ +++||.+.||+.++..|...+.||+|....+++.+..|+|
T Consensus 38 T~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i 116 (126)
T cd08400 38 TKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSL 116 (126)
T ss_pred eecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEE
Confidence 9985 5899999999999976553 56899999999887 8999999999999999999999999977654455678999
Q ss_pred EEEeeeecc
Q 008859 174 QLELKFTPC 182 (551)
Q Consensus 174 ~lsl~f~p~ 182 (551)
+|+|+|.+.
T Consensus 117 ~l~l~~~~~ 125 (126)
T cd08400 117 RIRARYSHE 125 (126)
T ss_pred EEEEEEEcc
Confidence 999999863
No 16
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=3.8e-19 Score=159.60 Aligned_cols=119 Identities=25% Similarity=0.404 Sum_probs=101.7
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv 98 (551)
|.|+|++|++|+.++.... .+||||.|.+.+..++||++
T Consensus 2 l~v~v~~a~~L~~~~~~~g-----------------------------------------~sDpYv~v~l~~~~~~kT~v 40 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNK-----------------------------------------MRDCYCTVNLDQEEVFRTKT 40 (121)
T ss_pred eEEEEEEccCCCCCCCCCC-----------------------------------------CcCcEEEEEECCccEEEeeE
Confidence 7899999999998753211 28999999998877899999
Q ss_pred cCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEEEe
Q 008859 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLEL 177 (551)
Q Consensus 99 i~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~lsl 177 (551)
++++.||+|||+|.|.+++....|.|.|+|.+.++ +++||.+.++++++..+...+.||+|... +...+..|+|++++
T Consensus 41 ~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~~G~i~l~~ 119 (121)
T cd08401 41 VEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV-DADSEVQGKVHLEL 119 (121)
T ss_pred EECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc-CCCCcccEEEEEEE
Confidence 99999999999999999987778999999999997 89999999999999988889999999532 22233579999998
Q ss_pred ee
Q 008859 178 KF 179 (551)
Q Consensus 178 ~f 179 (551)
+|
T Consensus 120 ~~ 121 (121)
T cd08401 120 RL 121 (121)
T ss_pred EC
Confidence 75
No 17
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=5.7e-19 Score=164.42 Aligned_cols=121 Identities=26% Similarity=0.419 Sum_probs=104.8
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv 98 (551)
|.|+|++|++|+.+|.++. +||||+|.+++.. .||++
T Consensus 2 L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~~-~kTk~ 38 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQV-LRTRP 38 (150)
T ss_pred EEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCEE-eeeEe
Confidence 8999999999999887654 8999999999855 69999
Q ss_pred cCC-CCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeeccccccc----ceeeeEEEccCCCC-----CC
Q 008859 99 LKN-SQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----SP 166 (551)
Q Consensus 99 i~n-s~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g----~~i~~w~~Ll~~~g-----kp 166 (551)
+.+ +.||+|||+|.|.++++. +.|.|+|+|.+..+ +++||++.||++++..+ ..+++||+|.+..+ ++
T Consensus 39 ~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~ 118 (150)
T cd04019 39 SQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKK 118 (150)
T ss_pred ccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccccccc
Confidence 977 699999999999998764 57899999999876 89999999999998753 55789999987765 66
Q ss_pred CCCCceEEEEeeeecc
Q 008859 167 PKPGASIQLELKFTPC 182 (551)
Q Consensus 167 ~k~~G~L~lsl~f~p~ 182 (551)
.+..|+|+|+++|.+.
T Consensus 119 ~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 119 RKFASRIHLRLCLDGG 134 (150)
T ss_pred CcccccEEEEEEecCc
Confidence 6788999999999754
No 18
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=3.1e-19 Score=158.63 Aligned_cols=116 Identities=26% Similarity=0.507 Sum_probs=100.7
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|++++.++. +||||+|++.+.. .||
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT 37 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGVT-KKT 37 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCCc-ccc
Confidence 789999999999999886554 8999999998744 799
Q ss_pred eecCC-CCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEE
Q 008859 97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (551)
Q Consensus 97 rvi~n-s~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~ 174 (551)
+++.+ +.||+|||.|.|.+.++ ...|.|+|||.+..++++||.+.+++.++..+.....|++|.. ++ +..|+|+
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~---~~~G~i~ 113 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KG---RYAGEVY 113 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CC---cEeeEEE
Confidence 98865 78999999999999875 4579999999998889999999999999988878899999953 33 3569999
Q ss_pred EEeee
Q 008859 175 LELKF 179 (551)
Q Consensus 175 lsl~f 179 (551)
|+|+|
T Consensus 114 l~l~f 118 (118)
T cd08681 114 LELTF 118 (118)
T ss_pred EEEEC
Confidence 99987
No 19
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=1.3e-18 Score=156.10 Aligned_cols=98 Identities=24% Similarity=0.446 Sum_probs=84.9
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeeccccccc-----cee
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG-----ELI 153 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g-----~~i 153 (551)
+||||+|.+.+. .+||++++++.||+|||+|.|.+.+. ...|.|+|||.+.+++++||++.++++++..+ ...
T Consensus 17 ~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 95 (121)
T cd08378 17 NDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA 95 (121)
T ss_pred CCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence 899999999875 57999999999999999999999874 56799999999988899999999999998753 246
Q ss_pred eeEEEccCCCCCCCCCCceEEEEeeee
Q 008859 154 SRWYDIIAPSGSPPKPGASIQLELKFT 180 (551)
Q Consensus 154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f~ 180 (551)
..||+|.+..+ .+..|+|+|+++|-
T Consensus 96 ~~W~~L~~~~~--~~~~G~i~l~~~~~ 120 (121)
T cd08378 96 PQWYRLEDKKG--GRVGGELMLAVWFG 120 (121)
T ss_pred cceEEccCCCC--CccceEEEEEEEec
Confidence 78999976654 35679999999983
No 20
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=1.7e-18 Score=154.72 Aligned_cols=121 Identities=30% Similarity=0.452 Sum_probs=102.9
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-eeeEE
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~-~~v~r 95 (551)
|.|.|+|++|++|++++..+. .+||||+|.+.+ ..++|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k 40 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR 40 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence 789999999999997654321 279999999988 57789
Q ss_pred eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEE
Q 008859 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (551)
Q Consensus 96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~ 174 (551)
|++++++.||.|||.|.|.+......|.|+|+|.+.++ +++||.+.+++.++..+...+.|...+..++++ .|+|+
T Consensus 41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~---~G~i~ 117 (124)
T cd04044 41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKP---VGELN 117 (124)
T ss_pred eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCcc---ceEEE
Confidence 99999999999999999999866778999999999886 899999999999999877776555444555564 59999
Q ss_pred EEeeeec
Q 008859 175 LELKFTP 181 (551)
Q Consensus 175 lsl~f~p 181 (551)
++++|.|
T Consensus 118 ~~l~~~p 124 (124)
T cd04044 118 YDLRFFP 124 (124)
T ss_pred EEEEeCC
Confidence 9999986
No 21
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=1.6e-18 Score=156.39 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=101.2
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr 97 (551)
.|.|+|++|++|++++..+. +||||+|.+.+++ .||+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~ 37 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR 37 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence 48999999999998775432 8999999999876 5999
Q ss_pred ecCCCCCCeEeeEEEEeecCCC----CeEEEEEEecCCC--CCceeEEEEeeccccc-ccceeeeEEEccCCCCCCCCCC
Q 008859 98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG 170 (551)
Q Consensus 98 vi~ns~nP~WnE~F~i~vah~~----~~l~f~Vkd~d~~--g~~lIG~v~Ipl~~l~-~g~~i~~w~~Ll~~~gkp~k~~ 170 (551)
+++++.||.|||+|.|.+.++. ..|.|+|||.+.+ ++++||++.|+++++. .++....||+|... ++..+..
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~ 116 (127)
T cd04022 38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVR 116 (127)
T ss_pred eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCcc
Confidence 9999999999999999998653 4699999999887 4899999999999998 57778899999543 3333467
Q ss_pred ceEEEEeeeec
Q 008859 171 ASIQLELKFTP 181 (551)
Q Consensus 171 G~L~lsl~f~p 181 (551)
|+|+|++.++.
T Consensus 117 G~l~l~~~~~~ 127 (127)
T cd04022 117 GEIGLKVYITD 127 (127)
T ss_pred EEEEEEEEEcC
Confidence 99999999863
No 22
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.78 E-value=3.1e-18 Score=154.40 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=91.4
Q ss_pred CCcEEEEEECC-eeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEE
Q 008859 80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (551)
Q Consensus 80 sDpYvtV~l~~-~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~ 157 (551)
+||||.+++.. ....||++++++.||+|||.|.|.+.+....|.|+|+|.+.++ +++||.+.+++.++..+.....||
T Consensus 18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 89999999974 3457999999999999999999999876778999999999988 899999999999999888889999
Q ss_pred EccCCCCCCCCCCceEEEEeeeeccCC
Q 008859 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (551)
Q Consensus 158 ~Ll~~~gkp~k~~G~L~lsl~f~p~~~ 184 (551)
+|....++..+..|+|.++++|.+.++
T Consensus 98 ~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 98 PLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EecCCCCCCCCcceEEEEEEEEecccc
Confidence 996554433456899999999988653
No 23
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.78 E-value=3.6e-18 Score=151.73 Aligned_cols=117 Identities=31% Similarity=0.544 Sum_probs=101.7
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|++++..+. +||||+|.+.+.. +||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T 37 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT 37 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence 789999999999998876553 8999999998766 699
Q ss_pred eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEE
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~l 175 (551)
++++++.||.|||+|.|++.+....+.|+|+|.+.++ +++||++.+++.++..+. ..|++|.+..++ .+..|+|.+
T Consensus 38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~-~~~~G~i~l 114 (119)
T cd08377 38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLR-TRAKGSILL 114 (119)
T ss_pred ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCC-CceeeEEEE
Confidence 9999999999999999999876778999999999876 899999999999998664 579999765443 336899999
Q ss_pred Eeee
Q 008859 176 ELKF 179 (551)
Q Consensus 176 sl~f 179 (551)
+|+|
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 9987
No 24
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=7.1e-18 Score=151.17 Aligned_cols=118 Identities=25% Similarity=0.508 Sum_probs=100.7
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr 97 (551)
.|.|+|++|++|+++|..+. +||||+|.+.+..++||+
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~ 38 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTA 38 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeee
Confidence 38899999999999886553 899999999988789999
Q ss_pred ecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeeccccccc-ceeeeEEEccCCCCCCCCCCceEEE
Q 008859 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQL 175 (551)
Q Consensus 98 vi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g-~~i~~w~~Ll~~~gkp~k~~G~L~l 175 (551)
+++++.||.|||.|.|++.+....+.|+|+|.+.++ +++||++.++++++..+ ...+.|++|....+. .+..|+|++
T Consensus 39 v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l 117 (121)
T cd04054 39 TVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHL 117 (121)
T ss_pred eEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEE
Confidence 999999999999999999887778999999999998 89999999999998764 458899999543222 235699988
Q ss_pred Eee
Q 008859 176 ELK 178 (551)
Q Consensus 176 sl~ 178 (551)
+++
T Consensus 118 ~~~ 120 (121)
T cd04054 118 ELS 120 (121)
T ss_pred EEE
Confidence 875
No 25
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.77 E-value=1.6e-17 Score=179.49 Aligned_cols=168 Identities=24% Similarity=0.372 Sum_probs=131.0
Q ss_pred ccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHH
Q 008859 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (551)
Q Consensus 209 r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~ 288 (551)
..++.++++.++ .+.|..+.++|++|++.|+++.|.+ .++. .+..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~-------~~d~------~~~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIW-------QDDE------LGREIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEE-------eCCh------hHHHHH
Confidence 578889998887 6889999999999999999998853 3333 358999
Q ss_pred HHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHhcCCCc-EEEe-cCCCCcccccccccccccccccC
Q 008859 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVL-APRYASSKLSYFKQQIVGTIFTH 366 (551)
Q Consensus 289 elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v-~~~l-~p~~~~~~~~~~~~~~~~~~~~h 366 (551)
+.|.++|++||+||+|+ |+.++... ........++++++ .+.. .|..+. . ......+.++
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~---~---~~~~~~~~r~ 165 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPR---P---LRFRRLNRRL 165 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCcccc---c---chhhhhhccc
Confidence 99999999999999997 88876321 12355677788898 5443 232221 1 1133567899
Q ss_pred ccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHH
Q 008859 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (551)
Q Consensus 367 HqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~ 446 (551)
|+|++|||+. ++|+||+|+.+.++... ....+|+|+|++++||+|.
T Consensus 166 H~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~ 211 (438)
T COG1502 166 HRKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVA 211 (438)
T ss_pred cceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHH
Confidence 9999999998 99999999999655420 0134899999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 008859 447 DVLINFEQRWRKATK 461 (551)
Q Consensus 447 dv~~~F~~rW~~~~~ 461 (551)
++..+|.++|+....
T Consensus 212 ~l~~~f~~~w~~~~~ 226 (438)
T COG1502 212 DLARLFIQDWNLESG 226 (438)
T ss_pred HHHHHHHHHhhhccC
Confidence 999999999998744
No 26
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.76 E-value=7.6e-18 Score=149.82 Aligned_cols=120 Identities=26% Similarity=0.444 Sum_probs=99.8
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|+++|.... .....++||||+|.+.+ ..+||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~------------------------------------~~~~g~~dPyv~v~~~~-~~~kT 43 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG------------------------------------GLVKGKSDPYVIVRVGA-QTFKS 43 (121)
T ss_pred CeEEEEEEEccCCcccccccc------------------------------------cCCCCCcCCEEEEEECC-EeEEc
Confidence 789999999999998775320 00001389999999988 55899
Q ss_pred eecCCCCCCeEeeEEEEeecC-CCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEE
Q 008859 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah-~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~l 175 (551)
++++++.||+|||+|.|.+.. ....|.|+|+|.+.+++++||.+.+++.++..+...+.||+|.+. ..|+|++
T Consensus 44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 999999999999999999875 356899999999988889999999999999988788999999432 4699999
Q ss_pred Eeee
Q 008859 176 ELKF 179 (551)
Q Consensus 176 sl~f 179 (551)
+++|
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 9875
No 27
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.76 E-value=1.5e-17 Score=151.17 Aligned_cols=127 Identities=24% Similarity=0.453 Sum_probs=103.5
Q ss_pred EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (551)
Q Consensus 15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~ 94 (551)
+-|.|.|+|++|++|+++|..++. -|. + ....++||||+|.+.+..++
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~---~~~-----------------~------------~~~g~~dpyv~v~~~~~~~~ 49 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH---AVP-----------------K------------KGSQLLDPYVSIDVDDTHIG 49 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh---ccc-----------------c------------cCccCcCcEEEEEECCEEEe
Confidence 468999999999999987753210 000 0 00113899999999998889
Q ss_pred EeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccc--cceeeeEEEccCCCCCCCCCCc
Q 008859 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA 171 (551)
Q Consensus 95 rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~--g~~i~~w~~Ll~~~gkp~k~~G 171 (551)
+|++++++.||.|||+|.|++. ....+.|.|+|.+.++ +++||.+.++++++.. +...+.|++|. +.|
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G 120 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQG 120 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCc
Confidence 9999999999999999999997 5568999999999887 7999999999999987 67789999992 459
Q ss_pred eEEEEeeeecc
Q 008859 172 SIQLELKFTPC 182 (551)
Q Consensus 172 ~L~lsl~f~p~ 182 (551)
+|+|+++|...
T Consensus 121 ~l~l~~~~~~~ 131 (132)
T cd04014 121 KLHVKIELKGS 131 (132)
T ss_pred EEEEEEEEecC
Confidence 99999998653
No 28
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=1e-17 Score=150.65 Aligned_cols=120 Identities=22% Similarity=0.419 Sum_probs=100.9
Q ss_pred eEEEEEEEEeecCCCCCC--CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859 17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~ 94 (551)
|.|.|+|++|++|++++. .+. +||||.|.+.+.. .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~ 37 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F 37 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence 789999999999998775 332 8999999997765 7
Q ss_pred EeeecCCCCCCeEeeEEEEeecC-CCCeEEEEEEecCCCC-CceeEEEEeeccccc---ccceeeeEEEccCCC-CCCCC
Q 008859 95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA---TGELISRWYDIIAPS-GSPPK 168 (551)
Q Consensus 95 rTrvi~ns~nP~WnE~F~i~vah-~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~---~g~~i~~w~~Ll~~~-gkp~k 168 (551)
||++++++.||.|||+|.|++.. ....|.|+|||.+.++ +++||.+.|++.++. ..+....||+|.+.. ++...
T Consensus 38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~ 117 (128)
T cd04024 38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117 (128)
T ss_pred ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence 99999999999999999999987 4668999999999986 899999999999987 334568999996553 23344
Q ss_pred CCceEEEEeee
Q 008859 169 PGASIQLELKF 179 (551)
Q Consensus 169 ~~G~L~lsl~f 179 (551)
..|+|+|+++|
T Consensus 118 ~~G~i~l~~~~ 128 (128)
T cd04024 118 VSGEIHLQFSW 128 (128)
T ss_pred ccceEEEEEEC
Confidence 68999999875
No 29
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=1.3e-17 Score=151.37 Aligned_cols=120 Identities=22% Similarity=0.395 Sum_probs=100.6
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe------
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------ 91 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~------ 91 (551)
.|.|+|++|++|+++|..+. +||||+|.+.+.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~ 38 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI 38 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence 48999999999998886553 899999999764
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccce------eeeEEEccCCCC
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPSG 164 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~------i~~w~~Ll~~~g 164 (551)
...||++++++.||.|||+|.|.+......|.|+|+|.+.++ +++||.+.|++.++..+.. ...||+|....
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~- 117 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRS- 117 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecC-
Confidence 246999999999999999999999876778999999999998 8999999999999986543 45899985432
Q ss_pred CCCCCCceEEEEeeee
Q 008859 165 SPPKPGASIQLELKFT 180 (551)
Q Consensus 165 kp~k~~G~L~lsl~f~ 180 (551)
+..+..|+|+|++.|.
T Consensus 118 ~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 118 SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCcceeEEEEEEeeC
Confidence 2234689999999984
No 30
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=1.8e-17 Score=147.85 Aligned_cols=113 Identities=27% Similarity=0.499 Sum_probs=96.5
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeEEe
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART 96 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~rT 96 (551)
|.|+|++|++|++.+..+. +||||+|.+.+ ....||
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT 39 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT 39 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence 7899999999998775443 89999999964 456799
Q ss_pred eecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEE
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~l 175 (551)
++++++.||+|||+|.|.+.... ..|.|+|||.+.+++++||++.+++.++..|.....|++|.. . ..|+|++
T Consensus 40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~-----~~g~l~~ 113 (119)
T cd04036 40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-Q-----GKEELEV 113 (119)
T ss_pred ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-C-----CCceEEE
Confidence 99999999999999999987763 358999999998888999999999999999999999999832 2 3588887
Q ss_pred Eeee
Q 008859 176 ELKF 179 (551)
Q Consensus 176 sl~f 179 (551)
++.+
T Consensus 114 ~~~~ 117 (119)
T cd04036 114 EFLL 117 (119)
T ss_pred EEEe
Confidence 7754
No 31
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=4.2e-17 Score=144.49 Aligned_cols=112 Identities=26% Similarity=0.388 Sum_probs=98.8
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv 98 (551)
|.|+|++|++|+.++..+. +||||++.+.+.. ++|++
T Consensus 2 ~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~v 38 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSKV 38 (116)
T ss_pred EEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eeccc
Confidence 7899999999998876443 8999999998755 79999
Q ss_pred cCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEEE
Q 008859 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (551)
Q Consensus 99 i~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~ls 176 (551)
++++.||.|||+|.|.+..+ ...|.|+|+|.+.++ +++||.+.+++.++..++..+.|++|.+ ..|+|++.
T Consensus 39 ~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~ 111 (116)
T cd08376 39 CSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLL 111 (116)
T ss_pred ccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEE
Confidence 99999999999999998876 567999999999987 8999999999999998889999999932 24999999
Q ss_pred eeee
Q 008859 177 LKFT 180 (551)
Q Consensus 177 l~f~ 180 (551)
+.|+
T Consensus 112 ~~~~ 115 (116)
T cd08376 112 LTLT 115 (116)
T ss_pred EEec
Confidence 8875
No 32
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=2.6e-17 Score=147.48 Aligned_cols=116 Identities=27% Similarity=0.431 Sum_probs=98.1
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv 98 (551)
|.|+|++|++|+.++..+. +||||+|++.+.. .+|++
T Consensus 2 L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~v 38 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETSV 38 (123)
T ss_pred EEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eecee
Confidence 8899999999998876443 8999999998765 69999
Q ss_pred cCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCC---CCCCCceE
Q 008859 99 LKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGASI 173 (551)
Q Consensus 99 i~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk---p~k~~G~L 173 (551)
++++.||+|||+|.|.+.... ..|.|+|+|.+.++ +++||.+.+++.++..+...+.||+|.....+ ..+..|.|
T Consensus 39 ~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l 118 (123)
T cd04025 39 VKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSL 118 (123)
T ss_pred ecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEE
Confidence 999999999999999998764 57999999999988 89999999999999887788999999754333 22345778
Q ss_pred EEEe
Q 008859 174 QLEL 177 (551)
Q Consensus 174 ~lsl 177 (551)
+|.+
T Consensus 119 ~~~~ 122 (123)
T cd04025 119 RLKV 122 (123)
T ss_pred EEEe
Confidence 8766
No 33
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=3.7e-17 Score=147.44 Aligned_cols=103 Identities=35% Similarity=0.593 Sum_probs=92.4
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeee
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~ 155 (551)
+||||+|.+.+.+ .||++++++.||+|||+|.|++.+. ...|.|+|||.+.++ +++||++.++++++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 8999999998765 6999999999999999999999875 567999999999887 7999999999999999888999
Q ss_pred EEEccCCCCCCCCCCceEEEEeeeeccCCC
Q 008859 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (551)
Q Consensus 156 w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~~ 185 (551)
|++|.+.++++. .|+|+++++|.|...+
T Consensus 94 ~~~L~~~~~~~~--~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRPT--GATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCcc--cEEEEEEEEEeCCCCc
Confidence 999987777653 5899999999998654
No 34
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.73 E-value=1.3e-17 Score=146.83 Aligned_cols=101 Identities=33% Similarity=0.554 Sum_probs=88.4
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv 98 (551)
|.|+|++|++|++++.... ++||||+|.+++ ..+||++
T Consensus 1 l~V~v~~a~~L~~~d~~~~-----------------------------------------~~Dpyv~v~~~~-~~~kT~v 38 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSD-----------------------------------------LTDAFVEVKFGS-TTYKTDV 38 (110)
T ss_pred CEEEEEEEECCCccccCCC-----------------------------------------CCCceEEEEECC-eeEecce
Confidence 6899999999998874221 289999999988 5579999
Q ss_pred cCCCCCCeE-eeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccc---cceeeeEEEccC
Q 008859 99 LKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA 161 (551)
Q Consensus 99 i~ns~nP~W-nE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~---g~~i~~w~~Ll~ 161 (551)
++++.||.| ||+|.|.+.+. ...|.|+|+|.+.++ +++||++.+++.++.. +..+++||+|++
T Consensus 39 ~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 39 VKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999 99999999875 357999999999998 7999999999999986 567999999976
No 35
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=1.3e-17 Score=149.32 Aligned_cols=103 Identities=18% Similarity=0.359 Sum_probs=89.4
Q ss_pred EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 008859 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (551)
Q Consensus 14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--- 90 (551)
+-+|.|.|+|++|++|++++ .+. +||||+|++..
T Consensus 9 ~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~p~~~ 45 (119)
T cd08685 9 GQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLSPDKE 45 (119)
T ss_pred EcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEEeCCC
Confidence 46799999999999999877 332 89999999954
Q ss_pred -eeeEEeeecCCCCCCeEeeEEEEeecCC--CCeEEEEEEecCCCC--CceeEEEEeecccccccceeeeEEEc
Q 008859 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 91 -~~v~rTrvi~ns~nP~WnE~F~i~vah~--~~~l~f~Vkd~d~~g--~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
....||++++++.||+|||+|.|.+.+. ...+.|+|||.+..+ +++||.+.||+.++..++.+++||.|
T Consensus 46 ~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 46 VRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 3456999999999999999999999875 346899999998764 68999999999999988889999986
No 36
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.71 E-value=4.3e-17 Score=146.51 Aligned_cols=103 Identities=25% Similarity=0.496 Sum_probs=89.6
Q ss_pred EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 008859 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (551)
Q Consensus 14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--- 90 (551)
+.-|.|.|+|++|++|+.++ .+. +||||+|.+..
T Consensus 10 y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~~~~~ 46 (122)
T cd08381 10 YKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLLPDPQ 46 (122)
T ss_pred EeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEeeCCc
Confidence 44689999999999999887 432 89999999953
Q ss_pred -eeeEEeeecCCCCCCeEeeEEEEee-cC---CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 91 -ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 91 -~~v~rTrvi~ns~nP~WnE~F~i~v-ah---~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
....||++++++.||.|||+|.|++ .. ....|.|+|||.+.++ +++||.+.|++.++..++..+.||+|
T Consensus 47 ~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 47 KTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred cCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3357999999999999999999987 33 2457999999999998 89999999999999988888999997
No 37
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=2.2e-16 Score=142.48 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=101.6
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r 95 (551)
++.|.|+|++|++|+++|.++. +||||+|.+.+.. .|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k 38 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR 38 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence 5679999999999998876553 8999999998876 69
Q ss_pred eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCC-CCCCCceEE
Q 008859 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS-PPKPGASIQ 174 (551)
Q Consensus 96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk-p~k~~G~L~ 174 (551)
|++++++.||+|||.|.|.+..+...|.|+|||++.+++++||.+.+++.++. .....|++|.....+ ..+..|+|.
T Consensus 39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~ 116 (126)
T cd04046 39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTIS 116 (126)
T ss_pred eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEE
Confidence 99999999999999999999888888999999999999999999999998764 344578888533222 234679999
Q ss_pred EEeeeec
Q 008859 175 LELKFTP 181 (551)
Q Consensus 175 lsl~f~p 181 (551)
+++++.+
T Consensus 117 ~~~~~~~ 123 (126)
T cd04046 117 VKVTSSD 123 (126)
T ss_pred EEEEEcc
Confidence 9998765
No 38
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=8.4e-17 Score=144.21 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=94.6
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|++.+..+. +||||+|.+.+..+++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT 38 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT 38 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence 789999999999998876543 89999999988778999
Q ss_pred eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCC
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~ 163 (551)
++++++.||.|||.|.|++.++...|.|+|+|.+.++ +++||.+.+++.++..+ ..++||.+++.+
T Consensus 39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999999998889999999999998 78999999999999876 779999998765
No 39
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.71 E-value=1.9e-16 Score=167.96 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=107.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
-..|++++++|++||++|+|+.|++. ++++. .+.+|.++|++||+|||+||||+ |..++.
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~-----~~~d~------~g~~i~~aL~~aa~rGV~Vril~-D~~~~~-------- 89 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCN-----LRSTP------EGRLILDKLKEAAESGVKVTILV-DEQSGD-------- 89 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEec-----ccCCc------hHHHHHHHHHHhccCCCeEEEEe-cCCCCC--------
Confidence 46899999999999999999999631 33333 35899999999999999999996 975421
Q ss_pred CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (551)
Q Consensus 321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt 400 (551)
...+.|+.+||++..... .. + +..+..|.|++|||++ +||+||+||++ +|-+
T Consensus 90 --------~~~~~L~~~Gv~v~~~~~--~~-~--------~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~~~ 141 (369)
T PHA03003 90 --------KDEEELQSSNINYIKVDI--GK-L--------NNVGVLLGSFWVSDDR--------RCYIGNASLTG-GSIS 141 (369)
T ss_pred --------ccHHHHHHcCCEEEEEec--cc-c--------CCCCceeeeEEEEcCc--------EEEEecCccCC-cccC
Confidence 235678888999764321 10 0 0012348899999999 99999999998 4432
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCC
Q 008859 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKL 462 (551)
Q Consensus 401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~ 462 (551)
..+ ....|+|. ||+|.++...|.+.|+.++++
T Consensus 142 ~~~-------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~ 173 (369)
T PHA03003 142 TIK-------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNK 173 (369)
T ss_pred ccc-------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCC
Confidence 222 13579994 999999999999999877553
No 40
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.71 E-value=1.8e-16 Score=145.27 Aligned_cols=114 Identities=24% Similarity=0.396 Sum_probs=96.3
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|+++|.++. +||||++.+++.. .||
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-~kT 51 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-HKT 51 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-eec
Confidence 899999999999998886553 8999999997765 799
Q ss_pred eecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccc-----cceeeeEEEccCCCCCCCCC
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSPPKP 169 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~-----g~~i~~w~~Ll~~~gkp~k~ 169 (551)
++++++.||.|||.|.|.+.... ..|.|+|||.+.++ +++||.+.|++.++.. ...+..|+++ .+ +.
T Consensus 52 ~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~---~~ 125 (136)
T cd08375 52 KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HE---VP 125 (136)
T ss_pred cccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---cc---cc
Confidence 99999999999999999997654 56899999999988 8999999999999885 2345567766 12 34
Q ss_pred CceEEEEeee
Q 008859 170 GASIQLELKF 179 (551)
Q Consensus 170 ~G~L~lsl~f 179 (551)
.|+|+|++.|
T Consensus 126 ~g~i~l~~~~ 135 (136)
T cd08375 126 TGEVVVKLDL 135 (136)
T ss_pred ceeEEEEEEe
Confidence 6999999876
No 41
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.70 E-value=1.3e-16 Score=143.00 Aligned_cols=101 Identities=34% Similarity=0.557 Sum_probs=89.9
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeE
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVA 94 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~ 94 (551)
|.|.|+|++|++|+.++..+. +||||+|.+.+ ..+.
T Consensus 16 ~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 53 (124)
T cd08385 16 NQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKKKF 53 (124)
T ss_pred CEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCCce
Confidence 899999999999998875443 89999999853 3567
Q ss_pred EeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 95 RTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 95 rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.++++++..|+..++|++|
T Consensus 54 kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 54 ETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred ecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 999999999999999999998763 457999999999987 89999999999999889999999998
No 42
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=1.1e-16 Score=139.74 Aligned_cols=98 Identities=26% Similarity=0.487 Sum_probs=85.7
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv 98 (551)
|.|+|++|++|++++..+. +||||+|.+++. ..||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT~v 38 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGKT-TQKSKV 38 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECCE-EEeCcc
Confidence 7899999999998765332 899999999984 579999
Q ss_pred cCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeeccccccc--ceeeeEEEccC
Q 008859 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDIIA 161 (551)
Q Consensus 99 i~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g--~~i~~w~~Ll~ 161 (551)
++++.||+|||+|.|.+.++ ...|.|+|+|.+. +++||++.|++.++..+ ..+++||+|.+
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 99999999999999999985 5679999999987 88999999999999864 46899999943
No 43
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=1.5e-16 Score=142.95 Aligned_cols=117 Identities=25% Similarity=0.374 Sum_probs=96.0
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr 97 (551)
.|+|+|++|++|++++.++. +||||+|++.+..++||+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~ 38 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTD 38 (123)
T ss_pred CeEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEcc
Confidence 38999999999998876553 899999999766678999
Q ss_pred ecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC---CceeEEEEeecccccccc-eeeeEEEccCCCCC-CCCCCce
Q 008859 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGAS 172 (551)
Q Consensus 98 vi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g---~~lIG~v~Ipl~~l~~g~-~i~~w~~Ll~~~gk-p~k~~G~ 172 (551)
+++++.||.|||+|.|++.. ...|.|+|||.+.++ +++||.+.+++.++.... ....|++|...... .....|+
T Consensus 39 v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~ 117 (123)
T cd08382 39 VAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGK 117 (123)
T ss_pred EEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeE
Confidence 99999999999999999976 678999999999886 479999999999987543 34679999544432 2234688
Q ss_pred EEEEe
Q 008859 173 IQLEL 177 (551)
Q Consensus 173 L~lsl 177 (551)
|.+++
T Consensus 118 v~~~~ 122 (123)
T cd08382 118 IVVSL 122 (123)
T ss_pred EEEEe
Confidence 87765
No 44
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.1e-16 Score=143.47 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=85.2
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC------e
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------A 91 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~------~ 91 (551)
.|.|+|++|++|+.++. +. +||||+|++.+ .
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~ 37 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK 37 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence 38999999999997763 32 89999999832 2
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
+..||+++.++.||+|||+|.|.+... ...|.|+|+|.+.++ +++||++.||+.++..++..+.|++|
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L 110 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPL 110 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEEC
Confidence 346999999999999999999999753 245899999999887 88999999999999998889999999
No 45
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.69 E-value=1.2e-16 Score=143.33 Aligned_cols=102 Identities=26% Similarity=0.499 Sum_probs=90.5
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCeee
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQATV 93 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l--~~~~v 93 (551)
.|.|.|+|++|++|++++..+. +||||+|.+ .+..+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~~ 52 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSNT 52 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCCc
Confidence 3789999999999998876543 899999999 43567
Q ss_pred EEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 94 ~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
+||++++++.||+|||+|.|.+.+. ...|.|+|+|.+.++ +++||.+.|+++++..++..+.|++|
T Consensus 53 ~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 53 KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred EeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 8999999999999999999998775 357999999999987 89999999999999878889999998
No 46
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.69 E-value=1.2e-16 Score=143.45 Aligned_cols=113 Identities=25% Similarity=0.428 Sum_probs=95.7
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr 97 (551)
+|.|+|++|++|++.+..+. +||||+|++.+....+|+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~ 38 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP 38 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence 58999999999998775443 899999999884557999
Q ss_pred ecC-CCCCCeEeeEEEEeecCC-----CCeEEEEEEecCCCC-CceeEEEEeeccccccccee-----eeEEEccCCCCC
Q 008859 98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-----SRWYDIIAPSGS 165 (551)
Q Consensus 98 vi~-ns~nP~WnE~F~i~vah~-----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i-----~~w~~Ll~~~gk 165 (551)
++. ++.||.|||.|.|.+.++ ...|.|+|+|.+.++ +++||.+.|++.++..+... ..||+|.+.+|+
T Consensus 39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~ 118 (125)
T cd04051 39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK 118 (125)
T ss_pred cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC
Confidence 986 489999999999999887 578999999999876 89999999999999876543 689999887777
Q ss_pred CCCCCceEEE
Q 008859 166 PPKPGASIQL 175 (551)
Q Consensus 166 p~k~~G~L~l 175 (551)
+ .|.|++
T Consensus 119 ~---~G~~~~ 125 (125)
T cd04051 119 P---QGVLNF 125 (125)
T ss_pred c---CeEEeC
Confidence 4 477764
No 47
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=5.9e-16 Score=139.12 Aligned_cols=114 Identities=24% Similarity=0.394 Sum_probs=95.5
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeEE
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR 95 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~r 95 (551)
.|.|+|++|++|++++..+. +||||+|.+.+ ...+|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k 39 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK 39 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence 47899999999998876443 89999999865 45689
Q ss_pred eeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeecccccc---cceeeeEEEccCCCCCCCCCC
Q 008859 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG 170 (551)
Q Consensus 96 Trvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~---g~~i~~w~~Ll~~~gkp~k~~ 170 (551)
|++++++.||.|||+|.|++.+. ...|.|+|+|.+.++ +++||++.++++.+.. |...+.|++|. ..
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~ 111 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQ 111 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CC
Confidence 99999999999999999999885 567999999999987 8999999999987643 44677899992 24
Q ss_pred ceEEEEeeeec
Q 008859 171 ASIQLELKFTP 181 (551)
Q Consensus 171 G~L~lsl~f~p 181 (551)
|+|++.+.+.-
T Consensus 112 g~i~l~~~~~~ 122 (126)
T cd04043 112 GRLLLRVSMEG 122 (126)
T ss_pred CeEEEEEEEee
Confidence 88888888753
No 48
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=2.7e-16 Score=145.54 Aligned_cols=108 Identities=20% Similarity=0.399 Sum_probs=90.5
Q ss_pred EEEeeEEEEEEEEeecCCCCCC-CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-
Q 008859 13 IYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (551)
Q Consensus 13 ~~lhG~L~v~I~eA~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~- 90 (551)
.+-.|.|.|+|++|++|+.++. .+ .+||||++++..
T Consensus 25 ~y~~~~L~V~Vi~ArnL~~~~~~~g------------------------------------------~sDPYVKv~Llp~ 62 (146)
T cd04028 25 YDKKGQLEVEVIRARGLVQKPGSKV------------------------------------------LPAPYVKVYLLEG 62 (146)
T ss_pred EeCCCEEEEEEEEeeCCCcccCCCC------------------------------------------CcCCeEEEEEECC
Confidence 3456999999999999987642 22 289999999943
Q ss_pred -e--eeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEE-ecCCCC-CceeEEEEeecccccccceeeeEEEccCC
Q 008859 91 -A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (551)
Q Consensus 91 -~--~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vk-d~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~ 162 (551)
. ...||++++++.||+|||+|.|.+......|.|+|| |.+.++ +++||.+.|+++++..+.....||+|+..
T Consensus 63 ~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 63 KKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 2 356999999999999999999999866667999999 566666 79999999999999878888999999654
No 49
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.68 E-value=1.3e-16 Score=147.83 Aligned_cols=100 Identities=28% Similarity=0.546 Sum_probs=91.4
Q ss_pred EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee
Q 008859 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (551)
Q Consensus 13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~ 92 (551)
..++|.|.|+|++|.+|.-.|+.+. |||||.+.+++++
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~ 39 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQK 39 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCee
Confidence 3578999999999999998887543 9999999999998
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeee
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~ 155 (551)
+ |||++.++.||+|||.|.|.+.++...|.++|||+|.|. +++||.|.||+..+..++....
T Consensus 40 l-kT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 40 L-KTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred e-eeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhhhc
Confidence 5 999999999999999999999999999999999999998 8999999999999997765554
No 50
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.68 E-value=6.5e-16 Score=136.68 Aligned_cols=97 Identities=24% Similarity=0.435 Sum_probs=77.7
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeE
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRW 156 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w 156 (551)
+||||.|++.+..++||+++++ .||.|||+|.|.+.+. ...|.|.|+|.+..+ ..+|.+.+++..+..++..+.|
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~-~~~~~g~v~l~~~~~~~~~~~w 95 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD-RDIVIGKVALSKLDLGQGKDEW 95 (117)
T ss_pred CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-CeeEEEEEEecCcCCCCcceeE
Confidence 8999999999877899999999 9999999999999884 456788889988664 2244445666666668889999
Q ss_pred EEccCCCCCCCCCCceEEEEeee
Q 008859 157 YDIIAPSGSPPKPGASIQLELKF 179 (551)
Q Consensus 157 ~~Ll~~~gkp~k~~G~L~lsl~f 179 (551)
|+|...+++. +..|+|+|+++|
T Consensus 96 ~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 96 FPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred EECccCCCCC-CcCceEEEEEEC
Confidence 9996555432 467999999987
No 51
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=4.5e-16 Score=139.96 Aligned_cols=97 Identities=21% Similarity=0.329 Sum_probs=85.9
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|+.++ +.||||.|.+++.+ .+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---------------------------------------------~~dPYV~Ik~g~~k-~kT 35 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---------------------------------------------KFNTYVTLKVQNVK-STT 35 (127)
T ss_pred ceEEEEEEEeeCCCCCC---------------------------------------------CCCCeEEEEECCEE-eEe
Confidence 57999999999997543 16899999998866 699
Q ss_pred eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccccccee--eeEEEcc
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII 160 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i--~~w~~Ll 160 (551)
+++++ .||.|||.|.|.+......|+|+|||++.+++++||++.|||.++..++.. ..||+|.
T Consensus 36 ~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 36 IAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 99988 499999999999998888899999999998899999999999999977654 7899984
No 52
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.68 E-value=4.7e-16 Score=140.37 Aligned_cols=103 Identities=22% Similarity=0.407 Sum_probs=88.1
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~ 91 (551)
-|.|.|+|++|++|+.++.... .+||||+|++.. .
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~-----------------------------------------~~DpyVkv~l~p~~~~~ 52 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKK-----------------------------------------RSNPYVKTYLLPDKSRQ 52 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCC-----------------------------------------CCCcEEEEEEEcCCccc
Confidence 3789999999999987664211 289999999842 3
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
...||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.|++.++...+..+.|+||
T Consensus 53 ~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 53 SKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred cceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 346999999999999999999998763 456999999999988 78999999999999988889999997
No 53
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=9.2e-16 Score=140.08 Aligned_cols=118 Identities=19% Similarity=0.356 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr 97 (551)
.|.|+|++|++|+++|..+. +||||+|.+.+.+ .||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~ 38 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE 38 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence 48999999999999886553 8999999998765 6999
Q ss_pred ecCCCCCCeEeeEEEEeecCC----------CCeEEEEEEecCCCC-CceeEEEEe-ecccccc---cceeeeEEEccCC
Q 008859 98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIAT---GELISRWYDIIAP 162 (551)
Q Consensus 98 vi~ns~nP~WnE~F~i~vah~----------~~~l~f~Vkd~d~~g-~~lIG~v~I-pl~~l~~---g~~i~~w~~Ll~~ 162 (551)
+++++.||.|||.|.|++... ...+.|+|+|.+.++ +++||++.+ |+..+.. +.....|++|. .
T Consensus 39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~ 117 (135)
T cd04017 39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K 117 (135)
T ss_pred eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence 999999999999999985432 246899999999988 799999997 5554442 45678999994 3
Q ss_pred CCCCCCCCceEEEEeeeecc
Q 008859 163 SGSPPKPGASIQLELKFTPC 182 (551)
Q Consensus 163 ~gkp~k~~G~L~lsl~f~p~ 182 (551)
.+ ...|+|.|++.+.+.
T Consensus 118 ~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 118 GG---QSAGELLAAFELIEV 134 (135)
T ss_pred CC---CchhheeEEeEEEEe
Confidence 23 357999999999875
No 54
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.67 E-value=2.6e-16 Score=140.09 Aligned_cols=99 Identities=19% Similarity=0.369 Sum_probs=84.8
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---ee
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---AT 92 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---~~ 92 (551)
.|.|.|+|++|++|+ ++ + ++||||+|++.. ..
T Consensus 13 ~~~L~V~vikA~~L~-~~--g------------------------------------------~sDPYVKv~L~~~~k~~ 47 (118)
T cd08677 13 KAELHVNILEAENIS-VD--A------------------------------------------GCECYISGCVSVSEGQK 47 (118)
T ss_pred CCEEEEEEEEecCCC-CC--C------------------------------------------CCCeEEEEEEcCCcCcc
Confidence 489999999999998 22 2 289999999953 24
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
..+|+|.+++.||+|||+|.|.++.. ...|.|+|+|.|.++ +++||++.+|+.++..+...+.|-+|
T Consensus 48 k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 48 EAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 56999999999999999999999875 456999999999998 89999999999998767777788764
No 55
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=2.6e-16 Score=146.56 Aligned_cols=113 Identities=31% Similarity=0.382 Sum_probs=85.0
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr 97 (551)
.|.|+|++|++||.||..+. ..++.. .+. .....+||||+|.+.+.+ .||+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~~--~~~------------------------~~~~~~DPYV~V~~~g~~-~kT~ 51 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKKA--FLG------------------------EKKELVDPYVEVSFAGQK-VKTS 51 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--ccceec--ccc------------------------CCCCCcCcEEEEEECCEe-eecc
Confidence 37899999999999985431 001110 000 011238999999999977 4999
Q ss_pred ecCCCCCCeEeeEEEEeecC--CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859 98 VLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (551)
Q Consensus 98 vi~ns~nP~WnE~F~i~vah--~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll 160 (551)
+++++.||+|||+|.|++.. ....|.|+|+|.|.++ +++||.+.|++.++... ..++|+|++
T Consensus 52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~-~~~~~lp~~ 116 (151)
T cd04018 52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS-GDEGFLPTF 116 (151)
T ss_pred eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC-CccccCCcc
Confidence 99999999999999998654 3568999999999996 89999999999998863 444555443
No 56
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.67 E-value=8.4e-16 Score=138.88 Aligned_cols=114 Identities=25% Similarity=0.500 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr 97 (551)
.|.|+|++|++|+++|..+. +||||+|.+.+. .+||+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~-~~kT~ 38 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKT-KKRTK 38 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCE-eeecc
Confidence 58999999999998886553 899999999765 47999
Q ss_pred ecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCC------------CCceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (551)
Q Consensus 98 vi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~------------g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk 165 (551)
+++++.||.|||.|.|.+..+...|.|+|||.|.. .+++||.+.+++.++. +....|++|...+ .
T Consensus 39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~-~ 115 (127)
T cd04027 39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRT-D 115 (127)
T ss_pred eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCC-C
Confidence 99999999999999999987777899999999853 3899999999999875 3457899996554 3
Q ss_pred CCCCCceEEEEe
Q 008859 166 PPKPGASIQLEL 177 (551)
Q Consensus 166 p~k~~G~L~lsl 177 (551)
..+..|+|+++|
T Consensus 116 ~~~~~G~i~~~~ 127 (127)
T cd04027 116 KSAVSGAIRLHI 127 (127)
T ss_pred CCcEeEEEEEEC
Confidence 334689988874
No 57
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.67 E-value=3.2e-16 Score=141.35 Aligned_cols=101 Identities=23% Similarity=0.409 Sum_probs=87.2
Q ss_pred eEEEEEEEEeecCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~ 91 (551)
+.|.|+|++|++|+.+|.. + ++||||+|++.. .
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g------------------------------------------~~dpyVkv~l~p~~~~~ 52 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQ------------------------------------------RSDPYVKTYLLPDKSNR 52 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCC------------------------------------------CCCcEEEEEEEcCCCcc
Confidence 5799999999999988753 2 289999999942 2
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
...||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.||+.++..++....||+|
T Consensus 53 ~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 53 GKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred ccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 346999999999999999999998753 457999999999988 78999999999999877778899997
No 58
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.67 E-value=4.7e-16 Score=139.84 Aligned_cols=101 Identities=27% Similarity=0.537 Sum_probs=88.5
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~ 92 (551)
+.|.|+|++|++|++++..+. +||||+|.+.+ ..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 53 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLLPDKSKST 53 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEEcCCCCCc
Confidence 789999999999998876443 89999999853 34
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCC--C-CceeEEEEeecccccccceeeeEEEc
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~--g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
..||++++++.||+|||+|.|.+... ...|.|+|||.+.+ + +++||.+.|++.++..++..++||+|
T Consensus 54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 67999999999999999999998654 35799999999876 4 89999999999999888889999997
No 59
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=3.6e-16 Score=137.93 Aligned_cols=98 Identities=28% Similarity=0.465 Sum_probs=84.9
Q ss_pred eEEEEEEEEeecCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eee
Q 008859 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v 93 (551)
|.|.|+|++|++|+++|.. +. +||||+|.+.+ ..+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~ 38 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL 38 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence 7899999999999988765 33 89999999853 356
Q ss_pred EEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 94 ~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
.+|++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++. .-.+|+++
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~ 106 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGR 106 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCcc
Confidence 7999999999999999999988764 457999999999998 899999999999998 33578887
No 60
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=7e-16 Score=136.13 Aligned_cols=98 Identities=20% Similarity=0.402 Sum_probs=86.3
Q ss_pred CCCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeecccccc-cceeeeE
Q 008859 79 TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELISRW 156 (551)
Q Consensus 79 tsDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~-g~~i~~w 156 (551)
.+||||+|.+.+...+||++++++.||+|||.|.|.+++. ...|+|.|+|.+.+++++||.+.++++++.. +...+.|
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w 91 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQW 91 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcccee
Confidence 4899999999987788999999999999999999999876 4669999999998889999999999999864 4557899
Q ss_pred EEccCCCCCCCCCCceEEEEeeeecc
Q 008859 157 YDIIAPSGSPPKPGASIQLELKFTPC 182 (551)
Q Consensus 157 ~~Ll~~~gkp~k~~G~L~lsl~f~p~ 182 (551)
|+|.+ ...|+|+++++|.|+
T Consensus 92 ~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 92 FPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred EECCC------CCCCEEEEEEEEecC
Confidence 99953 246999999999985
No 61
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=1.1e-15 Score=135.13 Aligned_cols=105 Identities=29% Similarity=0.488 Sum_probs=92.0
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv 98 (551)
|.|+|++|++|++++..+. +||||+|.+.+..++||++
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v 38 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT 38 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence 5799999999998775443 8999999998777789999
Q ss_pred cCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (551)
Q Consensus 99 i~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk 165 (551)
+.++.+|.|||+|.|.+... ...+.|+|||.+.++ +++||.+.+++.++..+...+.|++|...++.
T Consensus 39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 99999999999999999874 567999999999887 89999999999999988889999999654443
No 62
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=8e-16 Score=137.84 Aligned_cols=100 Identities=28% Similarity=0.447 Sum_probs=84.6
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~ 92 (551)
|.|.|+|++|++|+.++..+. +||||+|.+.+ ..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 53 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEKS 53 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCccc
Confidence 789999999999998876543 89999999964 34
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecC----CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah----~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
+.||++++++.||+|||+|.|++.. ....|.|+|||.+.++ +++||.+.+++.+.. .+....||+|
T Consensus 54 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 54 KRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred cccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 6799999999999999999999755 2467999999999987 899999999999843 2334689997
No 63
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.65 E-value=1.4e-15 Score=164.49 Aligned_cols=168 Identities=16% Similarity=0.168 Sum_probs=117.8
Q ss_pred cCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHH
Q 008859 210 KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGE 289 (551)
Q Consensus 210 ~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~e 289 (551)
.++.++++.++ .+.|++|+++|++|+++|||++|.+ .+++ .+..|.+
T Consensus 23 ~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~-------~~D~------~g~~il~ 69 (451)
T PRK09428 23 SPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYL-------EDDE------AGREILD 69 (451)
T ss_pred CcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEe-------cCCc------hHHHHHH
Confidence 57889999987 6899999999999999999999954 3333 3689999
Q ss_pred HHHHhhh--cCCeEEEEEeCCCCccCccCCCCCCccc-CCcHHHHhHhcCC--CcEEEecCCCCcccccccccccccccc
Q 008859 290 LLKYKSE--EGVRVLLLVWDDKTSHDKLGVKTPGVMA-THDEETKKFFKHS--SVNCVLAPRYASSKLSYFKQQIVGTIF 364 (551)
Q Consensus 290 lL~~ka~--~GV~V~iLvwD~~~s~~~~~~~~~g~~~-t~~~~~~~~~~~~--~v~~~l~p~~~~~~~~~~~~~~~~~~~ 364 (551)
+|.+|++ +||+|+||+ |...+.. +. -|... ..+......++++ ||++.++. .|.. ....++
T Consensus 70 AL~~a~~~~~gv~VrvLv-D~~Ra~R--g~--iG~~~~~~~~~~~~~l~~~~~gv~v~~f~-~p~~--------~~e~~g 135 (451)
T PRK09428 70 ALYQAKQQNPELDIKVLV-DWHRAQR--GL--IGAAASNTNADWYCEMAQEYPGVDIPVYG-VPVN--------TREALG 135 (451)
T ss_pred HHHHHHhcCCCcEEEEEE-Ecccccc--cc--cccCCCCcCHHHHHHHHHhCCCceEEEcC-Cccc--------cchhhh
Confidence 9998854 899999997 8742111 00 00000 0123444555543 68887642 1211 113567
Q ss_pred cCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHH
Q 008859 365 THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA 444 (551)
Q Consensus 365 ~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPa 444 (551)
++|+|++|||++ |+|+| .||.+.++.. + ... ..|.+++|+||+
T Consensus 136 r~HrKi~IiD~~--------v~ysG-aNi~d~Yl~~--~------------------------~~~--r~Dry~~i~g~~ 178 (451)
T PRK09428 136 VLHLKGFIIDDT--------VLYSG-ASLNNVYLHQ--H------------------------DKY--RYDRYHLIRNAE 178 (451)
T ss_pred hceeeEEEECCC--------EEEec-ccccHHHhcC--C------------------------ccc--CcceEEEEeCch
Confidence 899999999998 99997 7999844321 0 001 127788899999
Q ss_pred HHHHHHHHHHHHHhhcC
Q 008859 445 AYDVLINFEQRWRKATK 461 (551)
Q Consensus 445 a~dv~~~F~~rW~~~~~ 461 (551)
+.++..+|.+.|..++.
T Consensus 179 la~~~~~fi~~~~~~~~ 195 (451)
T PRK09428 179 LADSMVNFIQQNLLNSP 195 (451)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 99999999999987553
No 64
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.65 E-value=9.6e-16 Score=137.53 Aligned_cols=101 Identities=26% Similarity=0.520 Sum_probs=90.4
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|++++.++. +||||+|.+.+.. .+|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T 37 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS 37 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence 789999999999998876543 8999999998765 599
Q ss_pred eecCC-CCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859 97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (551)
Q Consensus 97 rvi~n-s~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll 160 (551)
+++++ +.||.|||+|.|.+..+ ...|.|+|+|.+.++ +++||.+.|++.++..++..++|++|.
T Consensus 38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 99885 89999999999999987 467999999999987 899999999999999888899999983
No 65
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=1.2e-15 Score=136.80 Aligned_cols=102 Identities=30% Similarity=0.465 Sum_probs=87.8
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--CeeeE
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATVA 94 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~v~ 94 (551)
+.|.|+|++|++|+.+|..+. +||||+|.+. +....
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~~ 53 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHKL 53 (125)
T ss_pred CEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcce
Confidence 589999999999998876543 8999999993 34557
Q ss_pred EeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859 95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (551)
Q Consensus 95 rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll 160 (551)
||++++++.||.|||+|.|.+... ...|.|+|+|.+.++ +++||.+.|++.++..++..+.|++|.
T Consensus 54 kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 54 ETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999999999999999974322 346999999999987 899999999999999888999999983
No 66
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.64 E-value=1.7e-15 Score=135.24 Aligned_cols=102 Identities=29% Similarity=0.530 Sum_probs=87.8
Q ss_pred eeEEEEEEEEeecCCCCC-CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 008859 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---- 90 (551)
.|.|.|+|++|++|+.++ ..+ .+||||+|.+..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~~dpyv~v~l~~~~~~ 50 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKK------------------------------------------RSNPYVKVYLLPDKSK 50 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCcEEEEEEecCCCc
Confidence 389999999999999877 322 289999999842
Q ss_pred eeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
...+||++++++.||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++..+...+.||+|
T Consensus 51 ~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 51 QSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 2457999999999999999999998763 457999999999887 79999999999999888888999986
No 67
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.64 E-value=1.2e-15 Score=134.35 Aligned_cols=98 Identities=20% Similarity=0.346 Sum_probs=81.5
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|+..+..++ ...++||||+|++.+. +.||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------------------~~~~~DPYv~v~~~~~-~~kT 41 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------------------TGFDMDPFVIISFGRR-VFRT 41 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------------------CCCccCceEEEEECCE-eEee
Confidence 789999999999998764321 0012799999999765 4699
Q ss_pred eecCCCCCCeEeeEEEEeecCCC--CeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~~--~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i 153 (551)
++++++.||+|||.|.|++.+.. ..|.|+|||.+.++ +++||++.+++++|..+...
T Consensus 42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCCC
Confidence 99999999999999999987643 36899999999998 89999999999999876543
No 68
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=3.2e-16 Score=142.32 Aligned_cols=108 Identities=29% Similarity=0.433 Sum_probs=92.8
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~ 92 (551)
|.|.|+|++|++|+++|..+. +||||+|.+.+ ..
T Consensus 13 ~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~~~ 50 (133)
T cd08384 13 RGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGKKS 50 (133)
T ss_pred CEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCccC
Confidence 899999999999998886543 89999999853 34
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k 168 (551)
..||++++++.||.|||+|.|.+..+ ...|.|+|+|.+.++ +++||.+.|++.. .|+..+.|++++...+++..
T Consensus 51 ~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~~ 128 (133)
T cd08384 51 KHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKIE 128 (133)
T ss_pred CceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCChh
Confidence 67999999999999999999998764 357999999999887 8999999999975 57778899999887777653
No 69
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.64 E-value=1.1e-15 Score=138.53 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=86.3
Q ss_pred eEEEEEEEEeecCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~ 91 (551)
+.|.|+|++|++|+.++.. + .+||||+|++.. .
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g------------------------------------------~~dpYVkv~llp~~~~~ 52 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKK------------------------------------------KCHPYVKVCLLPDKSHN 52 (128)
T ss_pred CEEEEEEEecCCCCccCCCCC------------------------------------------CCCeEEEEEEEeCCccc
Confidence 7899999999999987753 2 289999999843 2
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccc---cceeeeEEEc
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI 159 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~---g~~i~~w~~L 159 (551)
...||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.|++.++.. ++.+..||+|
T Consensus 53 ~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 53 SKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred ceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 356999999999999999999998764 457999999999887 8999999999999864 4578899997
No 70
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.63 E-value=1.9e-15 Score=140.33 Aligned_cols=85 Identities=21% Similarity=0.389 Sum_probs=71.6
Q ss_pred CCcEEEEEECCe----eeEEeeecCCCCCCeEeeEEEEeecC----------------CCCeEEEEEEecCCCC-CceeE
Q 008859 80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG 138 (551)
Q Consensus 80 sDpYvtV~l~~~----~v~rTrvi~ns~nP~WnE~F~i~vah----------------~~~~l~f~Vkd~d~~g-~~lIG 138 (551)
+||||+|.+.+. ...||++++++.||+|||+|.|.+.. ....|.|+|||.+.++ +++||
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG 98 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence 899999999652 34699999999999999999999851 1245899999999886 89999
Q ss_pred EEEeeccccccc-ceeeeEEEccCCCC
Q 008859 139 TAAIPAHTIATG-ELISRWYDIIAPSG 164 (551)
Q Consensus 139 ~v~Ipl~~l~~g-~~i~~w~~Ll~~~g 164 (551)
++.||+..+..+ .....||+|.....
T Consensus 99 ~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 99 EVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEecccccccCCcCcceeecCCccc
Confidence 999999999977 67889999965543
No 71
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=3.2e-16 Score=143.10 Aligned_cols=111 Identities=29% Similarity=0.488 Sum_probs=93.3
Q ss_pred EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e-
Q 008859 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A- 91 (551)
Q Consensus 15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~- 91 (551)
-+|.|.|+|++|++|++++..+. +||||+|.+.. .
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 50 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEEECCcc
Confidence 35899999999999998876543 89999999842 2
Q ss_pred -eeEEeeecCCCCCCeEeeEEEEeecCCC---CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCC
Q 008859 92 -TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (551)
Q Consensus 92 -~v~rTrvi~ns~nP~WnE~F~i~vah~~---~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp 166 (551)
...+|++++++.||.|||+|.|++.... ..|.|+|+|.+.++ +++||.+.|++.. .|+..+.|++++...+++
T Consensus 51 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 51 LKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP 128 (136)
T ss_pred cceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence 3568999999999999999999987642 46899999999998 7999999999975 477889999998887776
Q ss_pred CCC
Q 008859 167 PKP 169 (551)
Q Consensus 167 ~k~ 169 (551)
...
T Consensus 129 ~~~ 131 (136)
T cd08402 129 IAQ 131 (136)
T ss_pred eeE
Confidence 543
No 72
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.63 E-value=4.8e-15 Score=138.39 Aligned_cols=99 Identities=19% Similarity=0.400 Sum_probs=83.7
Q ss_pred CCcEEEEEE----CCeeeEEeeecCCCCCCeEeeEEEEeecCC---------CCeEEEEEEecCCC--CCceeEEEEeec
Q 008859 80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF--GAQIIGTAAIPA 144 (551)
Q Consensus 80 sDpYvtV~l----~~~~v~rTrvi~ns~nP~WnE~F~i~vah~---------~~~l~f~Vkd~d~~--g~~lIG~v~Ipl 144 (551)
+||||++++ .+....||++++++.||+|||+|.|.+... ...|.|+|||.+.| .+++||++.|++
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999998 344568999999999999999999998654 34699999999987 389999999999
Q ss_pred ccccccceeeeEEEccCCCCCCCCCCceEEEEeeeec
Q 008859 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (551)
Q Consensus 145 ~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p 181 (551)
+.+.....+..|++|++ ..|+ .+|+|+|+++...
T Consensus 105 ~~l~~~~~~~~~~~L~~-~~k~--~Gg~l~v~ir~r~ 138 (155)
T cd08690 105 EPLETKCEIHESVDLMD-GRKA--TGGKLEVKVRLRE 138 (155)
T ss_pred ccccccCcceEEEEhhh-CCCC--cCCEEEEEEEecC
Confidence 99988878889999964 3343 5899999998643
No 73
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=7.2e-16 Score=140.75 Aligned_cols=108 Identities=29% Similarity=0.469 Sum_probs=91.8
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--ee
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--AT 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~--~~ 92 (551)
|+|.|+|++|++|++++..+. +||||+|.+. + ..
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~~~ 52 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKRVE 52 (136)
T ss_pred CeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCccc
Confidence 899999999999998776543 8999999983 2 23
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k 168 (551)
..||++++++.||+|||+|.|.+... ...|.|+|+|.+.++ +++||.+.|++.+. |...+.|++++...++|..
T Consensus 53 ~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~ 130 (136)
T cd08405 53 KKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVA 130 (136)
T ss_pred cccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchh
Confidence 56999999999999999999987542 357999999999998 89999999999876 7778899999888888764
No 74
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.63 E-value=1.6e-15 Score=136.84 Aligned_cols=102 Identities=24% Similarity=0.479 Sum_probs=86.5
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----- 90 (551)
.|.|.|+|++|+||++++..+ .+||||+|+|..
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~------------------------------------------~~dpyVKv~Llp~~~~~ 50 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPE------------------------------------------NSKVYVRVALLPCSSST 50 (124)
T ss_pred CCEEEEEEeEecCCcccccCC------------------------------------------CCCeEEEEEEccCCCCC
Confidence 378999999999999876422 289999999843
Q ss_pred eeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccc-ccceeeeEEEc
Q 008859 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDI 159 (551)
Q Consensus 91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~-~g~~i~~w~~L 159 (551)
....||++.+++.||+|||+|.|++.+. ...|.|+||+.+.++ +++||.+.|++.++. +++....||+|
T Consensus 51 ~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 51 SCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 2367999999999999999999998874 567999999999987 899999999999995 44568889975
No 75
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.62 E-value=4.9e-16 Score=141.93 Aligned_cols=108 Identities=27% Similarity=0.448 Sum_probs=92.0
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e--
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~-- 91 (551)
.+.|.|+|++|++|+.+|..+. +||||+|.+.. .
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 51 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKRI 51 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCcee
Confidence 4789999999999998876543 89999999843 2
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~ 167 (551)
...||+|++++.||.|||+|.|.+... ...|+|+|||.+.++ +++||.+.|++.. .++..+.|++|++..|++.
T Consensus 52 ~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 52 SKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred eeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 246899999999999999999998753 456899999999998 8999999999988 4777899999988777765
No 76
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.62 E-value=5.4e-16 Score=141.20 Aligned_cols=109 Identities=33% Similarity=0.497 Sum_probs=92.1
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--e
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~--~ 91 (551)
+|.|.|+|++|++|++++..+. +||||+|++. + .
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~~~~~ 50 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCEGRRL 50 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCccc
Confidence 5889999999999999887653 8999999984 2 2
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~ 167 (551)
...||++++++.||.|||+|.|.+... ...|.|+|+|.+.+| +++||.+.|++. ..++..+.|++++...+++.
T Consensus 51 ~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 51 KKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred ceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 357999999999999999999998654 235899999999998 899999999987 44666789999998888875
Q ss_pred C
Q 008859 168 K 168 (551)
Q Consensus 168 k 168 (551)
.
T Consensus 129 ~ 129 (134)
T cd08403 129 A 129 (134)
T ss_pred e
Confidence 3
No 77
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.62 E-value=5.1e-15 Score=134.17 Aligned_cols=102 Identities=29% Similarity=0.403 Sum_probs=84.7
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeE
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVA 94 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~ 94 (551)
+.|.|+|++|++|+.++..+. ++||||+|.+.. ....
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~-----------------------------------------~~DpyV~v~l~~~~~~~~ 54 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSG-----------------------------------------TSDPYVKLQLLPEKEHKV 54 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCC-----------------------------------------CcCCEEEEEEeCCcCcee
Confidence 689999999999998775411 289999999852 4457
Q ss_pred EeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccccc--ceeeeEEEc
Q 008859 95 RTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI 159 (551)
Q Consensus 95 rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g--~~i~~w~~L 159 (551)
||++++++.||+|||+|.|. +... ...|.|+|+|.+.++ +++||.+.||+.++..+ +....|.+|
T Consensus 55 kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 55 KTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred eccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 99999999999999999995 4322 346999999999887 89999999999998643 678899998
No 78
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.62 E-value=7.8e-16 Score=139.32 Aligned_cols=108 Identities=31% Similarity=0.527 Sum_probs=93.4
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~ 92 (551)
|.|.|+|++|++|++++..+. +||||+|.+.+ ..
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 51 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKLK 51 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEee
Confidence 789999999999998764432 89999999854 24
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k 168 (551)
..||++++++.||.|||+|.|.+... ...|.|+|+|.+.++ +++||.+.|++++ .+...+.|++|++..+++..
T Consensus 52 ~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~ 129 (134)
T cd00276 52 KKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA 129 (134)
T ss_pred eecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE
Confidence 57999999999999999999998875 367999999999876 8999999999999 68889999999888777653
No 79
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.62 E-value=4.3e-16 Score=143.04 Aligned_cols=112 Identities=22% Similarity=0.348 Sum_probs=93.9
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe----
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA---- 91 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~---- 91 (551)
-|.|.|+|++|+||+.+|.... .++||||+|++...
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~k~ 53 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNAKL 53 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCccc
Confidence 3889999999999998874211 12899999998542
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~ 167 (551)
...||++++++.||+|||.|.|.+++. ...|.|+|+|.|.++ +++||.+.+++.. .|+..+.|..++...+++.
T Consensus 54 ~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 54 KKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred ceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 245999999999999999999999875 456999999999998 8999999999974 6888899999998888876
Q ss_pred CC
Q 008859 168 KP 169 (551)
Q Consensus 168 k~ 169 (551)
..
T Consensus 132 a~ 133 (138)
T cd08407 132 AM 133 (138)
T ss_pred hE
Confidence 43
No 80
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=3.7e-15 Score=131.31 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=71.7
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCC-----CeEEEEEEecCCCC-CceeEEEEeeccccccc---
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--- 150 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~-----~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g--- 150 (551)
+||||+|.+.+++ .||++++++.||.|||+|.|.+..+. ..|.|+|+|.+.++ +++||.+.|+++++..+
T Consensus 21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~ 99 (111)
T cd04011 21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99 (111)
T ss_pred CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence 8999999999876 59999999999999999999986643 56999999999987 79999999999999765
Q ss_pred ceeeeEEEccC
Q 008859 151 ELISRWYDIIA 161 (551)
Q Consensus 151 ~~i~~w~~Ll~ 161 (551)
.....|++|.+
T Consensus 100 ~~~~~w~~L~~ 110 (111)
T cd04011 100 AFLRKWLLLTD 110 (111)
T ss_pred cceEEEEEeeC
Confidence 45789999965
No 81
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.61 E-value=3e-15 Score=139.70 Aligned_cols=98 Identities=26% Similarity=0.472 Sum_probs=85.3
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe----
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA---- 91 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~---- 91 (551)
.+.|.|+|++|++|+++|..+. +||||+|.+...
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 64 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPASRER 64 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEccccccc
Confidence 3689999999999999886654 899999998531
Q ss_pred ------------------------eeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeeccc
Q 008859 92 ------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHT 146 (551)
Q Consensus 92 ------------------------~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~ 146 (551)
.++||++++++.||.|||+|.|++.+. ...|.|+|||.+ +++||.+.+++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~ 141 (153)
T cd08676 65 NSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKD 141 (153)
T ss_pred ccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHH
Confidence 357999999999999999999999875 457999999998 8999999999999
Q ss_pred ccccceeeeEEEc
Q 008859 147 IATGELISRWYDI 159 (551)
Q Consensus 147 l~~g~~i~~w~~L 159 (551)
+. +..+++||+|
T Consensus 142 l~-~~~~d~W~~L 153 (153)
T cd08676 142 LP-SCGLDSWFKL 153 (153)
T ss_pred hC-CCCCCCeEeC
Confidence 98 4458999986
No 82
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.61 E-value=4.8e-15 Score=132.50 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=88.1
Q ss_pred eeEEEEEEEEeecCCCCC-CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Cee
Q 008859 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~ 92 (551)
.+.|.|+|++|++|++++ ..+. +||||+|++. +..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~ 50 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDERR 50 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCCC
Confidence 367999999999999876 3332 8999999983 345
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
.+||++++++.||+|||.|.|.+... ...|.|+|||.+.++ +++||++.++++++........|++|
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 67999999999999999999998664 357999999999987 89999999999999988888899998
No 83
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.61 E-value=8.7e-16 Score=140.74 Aligned_cols=110 Identities=23% Similarity=0.357 Sum_probs=91.5
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--ee-
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT- 92 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~- 92 (551)
.+.|.|+|++|++|+.+|..+. +||||+|++.. .+
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~~ 51 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRKI 51 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCccc
Confidence 3689999999999998775432 89999999942 22
Q ss_pred -eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859 93 -VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (551)
Q Consensus 93 -v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~ 167 (551)
..||+|++++.||+|||+|.|.+... ...|.|+|+|.|.++ +++||++.|+.. ..|+..+.|..++...+++.
T Consensus 52 ~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v 129 (136)
T cd08406 52 SKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPV 129 (136)
T ss_pred cccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCee
Confidence 35899999999999999999998764 456999999999888 899999999776 45778899999988877766
Q ss_pred CC
Q 008859 168 KP 169 (551)
Q Consensus 168 k~ 169 (551)
..
T Consensus 130 ~~ 131 (136)
T cd08406 130 AM 131 (136)
T ss_pred eE
Confidence 43
No 84
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=3.9e-15 Score=136.52 Aligned_cols=100 Identities=21% Similarity=0.417 Sum_probs=86.7
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---eeeEE
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR 95 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---~~v~r 95 (551)
|.|+|++|++|+.+ ..+. +||||+|.+.. ..+.|
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r 37 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR 37 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence 67999999999876 3332 89999999984 45689
Q ss_pred eeecCCCCCCeEeeEEEEeecCC----------------CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEE
Q 008859 96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (551)
Q Consensus 96 Trvi~ns~nP~WnE~F~i~vah~----------------~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~ 158 (551)
|++++++.||.|||+|.|++... ...|.|+|||.+.++ +++||++.|++.++........||+
T Consensus 38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~ 117 (137)
T cd08675 38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF 117 (137)
T ss_pred cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence 99999999999999999998775 357999999999986 8999999999999987778899999
Q ss_pred ccC
Q 008859 159 IIA 161 (551)
Q Consensus 159 Ll~ 161 (551)
|..
T Consensus 118 L~~ 120 (137)
T cd08675 118 LQP 120 (137)
T ss_pred cCC
Confidence 843
No 85
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.60 E-value=1.3e-14 Score=130.30 Aligned_cols=116 Identities=29% Similarity=0.521 Sum_probs=95.8
Q ss_pred EEEEEEEEeecCCCCCC--CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 008859 18 DLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----- 90 (551)
.|.|+|++|++|++++. .+ .+||||+|++.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~------------------------------------------~~dpyv~v~l~~~~~~~ 40 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGS------------------------------------------IVDPYVEVEIHGLPADD 40 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCC------------------------------------------ccCCEEEEEEEeCCCCC
Confidence 58999999999998762 22 179999999942
Q ss_pred eeeEEeeecCCCC-CCeEeeEEEEeecCCC-CeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (551)
Q Consensus 91 ~~v~rTrvi~ns~-nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k 168 (551)
....||++++++. ||.|||+|.|.+..+. ..|.|+|+|.+.+++++||.+.++++++..| ..|++|++..|++.
T Consensus 41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~- 116 (128)
T cd00275 41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPL- 116 (128)
T ss_pred CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCC-
Confidence 3447999988765 9999999999988664 4589999999988889999999999999766 47899988888743
Q ss_pred CCceEEEEeee
Q 008859 169 PGASIQLELKF 179 (551)
Q Consensus 169 ~~G~L~lsl~f 179 (551)
..|.|.+.+++
T Consensus 117 ~~~~l~v~~~~ 127 (128)
T cd00275 117 ELSTLFVHIDI 127 (128)
T ss_pred cceeEEEEEEE
Confidence 56889888875
No 86
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=6.6e-15 Score=133.37 Aligned_cols=108 Identities=26% Similarity=0.430 Sum_probs=91.9
Q ss_pred EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 008859 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (551)
Q Consensus 13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~-- 90 (551)
-+..|.|.|+|++|++|+..+..+. +||||+|.+.+
T Consensus 9 ~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~~~~ 46 (131)
T cd04026 9 SVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDP 46 (131)
T ss_pred EECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEEcCC
Confidence 4567999999999999997664332 89999999963
Q ss_pred --eeeEEeeecCCCCCCeEeeEEEEeecCC--CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCC
Q 008859 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (551)
Q Consensus 91 --~~v~rTrvi~ns~nP~WnE~F~i~vah~--~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~ 163 (551)
...+||++++++.+|.|||+|.|++... ...|.|+|||.+.++ +++||.+.++++++... ..+.||+|+++.
T Consensus 47 ~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 47 KNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 3568999999999999999999998764 457999999999887 89999999999999855 788999997653
No 87
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.59 E-value=1.2e-14 Score=156.50 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=107.0
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
...++.+.+.|.+||++|+|+++.|.+ ++... +..+.+|.++|++||+|||+||||+ |..+.
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~------~d~~~--~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~--------- 86 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSL------SDEVG--TNFGTMILNEIIQLPKRGVRVRIAV-NKSNK--------- 86 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEec------Ccccc--chhHHHHHHHHHHHHHCCCEEEEEE-CCCCC---------
Confidence 467999999999999999999996532 11100 0124789999999999999999996 85321
Q ss_pred CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (551)
Q Consensus 321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt 400 (551)
.....+.|+.+||++..+... . ...+++|+|++|||++ ++|+||+|+.+ |+-+
T Consensus 87 ------~~~~~~~L~~aGv~v~~~~~~--~----------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 87 ------PLKDVELLQMAGVEVRYIDIT--N----------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred ------chhhHHHHHhCCCEEEEEecC--C----------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 112235677899998753211 0 1235789999999998 99999999965 5432
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEE--eCHHHHHHHHHHHHHHHhhcC
Q 008859 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATK 461 (551)
Q Consensus 401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i--~GPaa~dv~~~F~~rW~~~~~ 461 (551)
..+++++++ +||+|.++...|++.|+..++
T Consensus 140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~ 171 (424)
T PHA02820 140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVN 171 (424)
T ss_pred -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhcc
Confidence 124677776 799999999999999997653
No 88
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.58 E-value=9.5e-15 Score=132.27 Aligned_cols=89 Identities=27% Similarity=0.415 Sum_probs=76.8
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|++|++|+. +.++. +||||+|.+.+. ++||
T Consensus 28 ~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~~-~~kT 63 (127)
T cd04032 28 ATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGGQ-EKRT 63 (127)
T ss_pred EEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECCc-cccC
Confidence 799999999999973 44332 899999999877 5799
Q ss_pred eecCCCCCCeEeeEEEEeecC--CCCeEEEEEEecCCCC-CceeEEEEeecccccc
Q 008859 97 RVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah--~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~ 149 (551)
++++++.||+|||+|.|.... ....|.|+|||.+.++ +++||++.++++....
T Consensus 64 ~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 64 EVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred ceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 999999999999999997533 3668999999999997 8999999999986653
No 89
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.58 E-value=1e-14 Score=131.47 Aligned_cols=100 Identities=22% Similarity=0.385 Sum_probs=86.0
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeE
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVA 94 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~ 94 (551)
+.|.|+|++|++|++++..+. +||||++.+.. ....
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~llp~~~~~~ 53 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLLPSKKQRA 53 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEccCCccee
Confidence 689999999999998874332 79999988733 3457
Q ss_pred EeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 95 RTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 95 rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
||+|.++ .||+|||+|.|+ +... ...|.|+|+|.+.++ +++||.+.||++++..++....|++|
T Consensus 54 kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 54 KTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 9999988 999999999998 5543 457999999999998 89999999999999888889999998
No 90
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.58 E-value=2.7e-14 Score=128.83 Aligned_cols=97 Identities=25% Similarity=0.426 Sum_probs=78.8
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccce-----e
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----I 153 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~-----i 153 (551)
+||||.|.+.+...+||++++++.||.|||+|.|.+. ....|.|+|||.+.++ +++||.+.+++.++..+.. +
T Consensus 22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 100 (125)
T cd04021 22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV 100 (125)
T ss_pred CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence 8999999998776789999999999999999999985 4568999999999987 8999999999999885322 4
Q ss_pred eeEEEccCCCCCCCCCCceEEEEe
Q 008859 154 SRWYDIIAPSGSPPKPGASIQLEL 177 (551)
Q Consensus 154 ~~w~~Ll~~~gkp~k~~G~L~lsl 177 (551)
..|+++..++.-..+..|+|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 101 KLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEccCCCcceeeeeEEEEe
Confidence 569998644310234568888765
No 91
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.58 E-value=1.3e-14 Score=134.43 Aligned_cols=94 Identities=30% Similarity=0.625 Sum_probs=83.8
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r 95 (551)
.|.|.|+|++|++|+..+. + ++||||+|.+++.. +|
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~------------------------------------------~sDPYV~v~~g~~~-~k 36 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-T------------------------------------------SSDPYVVLTLGNQK-VK 36 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-C------------------------------------------CcCcEEEEEECCEE-EE
Confidence 3899999999999997664 3 28999999998765 79
Q ss_pred eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (551)
Q Consensus 96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i 153 (551)
|++++++.||+|||.|.|.+..+...+.|+|||.+.++ +++||.+.+++.++......
T Consensus 37 T~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 37 TRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred eeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 99999999999999999999998888999999999998 89999999999998865444
No 92
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.58 E-value=7.3e-15 Score=138.58 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=85.1
Q ss_pred EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----C
Q 008859 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (551)
Q Consensus 15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~----~ 90 (551)
-.|.|.|+|++|++|+.++..+. +||||+|.+. +
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~ 62 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK 62 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 35889999999999998875443 8999999883 3
Q ss_pred eeeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
..+.||+|++++.||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++..-...+.|+++
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 4568999999999999999999986433 346999999999998 89999999999998654445666665
No 93
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.57 E-value=5.8e-15 Score=134.92 Aligned_cols=109 Identities=23% Similarity=0.427 Sum_probs=88.6
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC-C---ee
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-Q---AT 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~-~---~~ 92 (551)
|.|.|+|++|++|+.+|..+. +||||+|.+. + ..
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~~~ 51 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKLIK 51 (135)
T ss_pred CeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcccc
Confidence 899999999999998886553 8999999973 2 23
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k 168 (551)
..+|++++++.||+|||+|.|.+... ...|.|+|+|.+..+ +++||.+.|...... ++..+.|+.|+...+++..
T Consensus 52 ~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~~~ 130 (135)
T cd08410 52 TKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTAVE 130 (135)
T ss_pred eEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCEee
Confidence 46999999999999999999998653 235899999999887 899999987653322 3357889999988888764
No 94
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.56 E-value=7e-15 Score=133.94 Aligned_cols=110 Identities=21% Similarity=0.352 Sum_probs=88.6
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~ 91 (551)
-|.|.|+|++|+||++++... +.||||+|++-. .
T Consensus 13 ~~rLtV~VikarnL~~~~~~~------------------------------------------~~dpYVKV~L~~~~k~~ 50 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPL------------------------------------------TLSFFVKVGMFSTGGLL 50 (135)
T ss_pred CCeEEEEEEEccCCCcccCCC------------------------------------------CCCcEEEEEEEECCCcc
Confidence 478999999999999864211 279999999842 2
Q ss_pred eeEEeeecCCCC-CCeEeeEEEEeecCCCC--eEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859 92 TVARTRVLKNSQ-EPVWNEHFNIPLAHPLS--NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (551)
Q Consensus 92 ~v~rTrvi~ns~-nP~WnE~F~i~vah~~~--~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~ 167 (551)
...+|++++++. +|+|||+|.|.++.+.. .+.++|+|.+..+ +++||++.++.+.. .++..++|.+++...+++.
T Consensus 51 ~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 51 YKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred eeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 356999999985 69999999999988644 4678888988887 89999999999863 4566899999988877775
Q ss_pred C
Q 008859 168 K 168 (551)
Q Consensus 168 k 168 (551)
.
T Consensus 130 a 130 (135)
T cd08692 130 T 130 (135)
T ss_pred e
Confidence 3
No 95
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.56 E-value=4.6e-15 Score=136.03 Aligned_cols=108 Identities=20% Similarity=0.414 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e--e
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A--T 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~--~ 92 (551)
+.|.|+|++|++|+.++ .+. +||||+|.+.. . .
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~~~ 51 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKVVK 51 (137)
T ss_pred CeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEEee
Confidence 78999999999999877 432 89999999853 1 2
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~ 167 (551)
..||++++++.||+|||+|.|.+... ...|.|+|++.+.++ +++||++.|+......|+..+.|..++...+++.
T Consensus 52 ~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i 130 (137)
T cd08409 52 TKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELI 130 (137)
T ss_pred eeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCce
Confidence 45999999999999999999998753 356999999999877 8999999999887788888999999987766654
No 96
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.55 E-value=9.2e-14 Score=131.48 Aligned_cols=145 Identities=22% Similarity=0.243 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
.+.++.+.++|.+|+++|+|+.|.+++.. .. ....|.+.|++++++||+|+||+++.. +...
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~~-------~~~~l~~~L~~a~~rGv~V~il~~~~~-~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI----TE-------YGPVILDALLAAARRGVKVRILVDEWS-NTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc----cc-------cchHHHHHHHHHHHCCCEEEEEEcccc-cCCc------
Confidence 67899999999999999999999765332 01 147999999999999999999984443 2210
Q ss_pred CcccCCcHHHHhHhcCC---CcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccc
Q 008859 321 GVMATHDEETKKFFKHS---SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (551)
Q Consensus 321 g~~~t~~~~~~~~~~~~---~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R 397 (551)
.......+.++.. ++++...+.... ...++|+|++|||++ ++++||.|+....
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 0112334445443 777664321100 235889999999998 9999999999844
Q ss_pred cCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH--HHHHHHHHHHHHHHhh
Q 008859 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA 459 (551)
Q Consensus 398 ~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP--aa~dv~~~F~~rW~~~ 459 (551)
+. .++|..+.+++| +|.++...|.+.|+..
T Consensus 138 ~~--------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 LT--------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred hh--------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 32 467999999999 7999999999999864
No 97
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.53 E-value=3.6e-14 Score=129.22 Aligned_cols=91 Identities=30% Similarity=0.456 Sum_probs=79.8
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC------
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------ 90 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~------ 90 (551)
+.|.|+|++|++|+.++..+. +||||+|++.+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~ 53 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD 53 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence 679999999999998876543 89999999853
Q ss_pred eeeEEeeecCCCCCCeEeeEEEEeecCC-----CCeEEEEEEecCCCC-CceeEEEEeecccccc
Q 008859 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (551)
Q Consensus 91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~-----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~ 149 (551)
....||++++++.||+|||+|.|++... ...|.|+|||.+.++ +++||.+.+++.++..
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 3468999999999999999999998763 457999999999998 8999999999999884
No 98
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.53 E-value=4.6e-14 Score=126.05 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=70.5
Q ss_pred CCcEEEEEECCee------eEEeeecCCCCCCeEeeEEEEeecC-CCCeEEEEEEecCC----CC-CceeEEEEeecccc
Q 008859 80 SDPYVTVVVPQAT------VARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI 147 (551)
Q Consensus 80 sDpYvtV~l~~~~------v~rTrvi~ns~nP~WnE~F~i~vah-~~~~l~f~Vkd~d~----~g-~~lIG~v~Ipl~~l 147 (551)
+||||+|.+.+.. ++||++++++.||+|||+|.|.+.. ....|.|+|||.+. ++ +++||.+.+++.++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence 8999999996643 6899999999999999999998543 45579999999997 65 89999999999999
Q ss_pred cccceeeeEEEc
Q 008859 148 ATGELISRWYDI 159 (551)
Q Consensus 148 ~~g~~i~~w~~L 159 (551)
..++....|++|
T Consensus 101 ~~~~~~~~~~~l 112 (120)
T cd04048 101 VSSPGQKLTLPL 112 (120)
T ss_pred hcCCCcEEEEEc
Confidence 988888889999
No 99
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=8.4e-14 Score=149.87 Aligned_cols=128 Identities=27% Similarity=0.395 Sum_probs=107.8
Q ss_pred EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--ee
Q 008859 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (551)
Q Consensus 15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~ 92 (551)
-+..|.|+|++|++|+.+| .+. ++||||++++.. ..
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d-~~g-----------------------------------------~sdpyVK~~llPdk~~ 202 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKD-RGG-----------------------------------------TSDPYVKVYLLPDKKG 202 (421)
T ss_pred cCCEEEEEEEEecCCCccc-CCC-----------------------------------------CCCCeeEEEEcCCCCC
Confidence 4577999999999999988 321 389999999954 34
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k 168 (551)
..+|+|.+++.||.|||+|.|.+++. ...|.|+|+|.|+|+ +++||.+.+|+..+........|.++.........
T Consensus 203 k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~ 282 (421)
T KOG1028|consen 203 KFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEE 282 (421)
T ss_pred cceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCccc
Confidence 57999999999999999999998886 567999999999999 89999999999998877778889999665444333
Q ss_pred CCceEEEEeeeeccCC
Q 008859 169 PGASIQLELKFTPCDK 184 (551)
Q Consensus 169 ~~G~L~lsl~f~p~~~ 184 (551)
..|+|.++|+|.|.+.
T Consensus 283 ~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 283 LAGELLLSLCYLPTAG 298 (421)
T ss_pred ccceEEEEEEeecCCC
Confidence 4489999999999843
No 100
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.51 E-value=1.9e-14 Score=132.18 Aligned_cols=110 Identities=18% Similarity=0.341 Sum_probs=89.6
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---e-
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A- 91 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---~- 91 (551)
.|.|.|+|++|+||+.++..+. +||||+|.+.. .
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~~ 51 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQE 51 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCcc
Confidence 3899999999999998775432 89999999842 2
Q ss_pred -eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCC
Q 008859 92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (551)
Q Consensus 92 -~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp 166 (551)
...||++.+++.||+|||+|.|++... ...|.|+|+|.+.++ +++||++.|++...- .+..+.|..++...+++
T Consensus 52 ~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 52 ISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQ 130 (138)
T ss_pred eeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCE
Confidence 235999999999999999999998864 457999999999887 899999999887432 23567899998877776
Q ss_pred CC
Q 008859 167 PK 168 (551)
Q Consensus 167 ~k 168 (551)
..
T Consensus 131 v~ 132 (138)
T cd08408 131 VC 132 (138)
T ss_pred Ee
Confidence 53
No 101
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.50 E-value=1.5e-13 Score=123.03 Aligned_cols=100 Identities=29% Similarity=0.405 Sum_probs=82.8
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~ 92 (551)
+.|.|+|++|++|++++..+. +||||+|.+.+ ..
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~~ 52 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASKAT 52 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCCCC
Confidence 689999999999998775443 89999999832 34
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEE
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~ 158 (551)
++||++++++.||.|||+|.|..... ...+.|+|||.+.+++++||.+.+++.++..++..+-|+.
T Consensus 53 ~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 53 KLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred ceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 68999999999999999999963322 3579999999988888999999999999997766655543
No 102
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.50 E-value=3.7e-13 Score=123.46 Aligned_cols=114 Identities=24% Similarity=0.383 Sum_probs=89.3
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e-----
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A----- 91 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~----- 91 (551)
..|++++|++|+ ++.+++ +||||+|++.. .
T Consensus 3 ~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~~ 39 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFPA 39 (137)
T ss_pred EEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCcccccc
Confidence 468999999998 676654 89999999953 1
Q ss_pred -----eeEEeeecCCCCCCeE-eeEEEEeecCCCCeEEEEEEecCCCC----CceeEEEEeecccccccc---eeeeEEE
Q 008859 92 -----TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATGE---LISRWYD 158 (551)
Q Consensus 92 -----~v~rTrvi~ns~nP~W-nE~F~i~vah~~~~l~f~Vkd~d~~g----~~lIG~v~Ipl~~l~~g~---~i~~w~~ 158 (551)
...||++++++.||+| ||+|.|.+.. ...|+|+|+|.+..+ +++||.+.||+.++..+. ....|++
T Consensus 40 ~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~ 118 (137)
T cd08691 40 LPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYT 118 (137)
T ss_pred cccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEE
Confidence 2579999999999999 9999999864 457999999976543 699999999999998653 4677999
Q ss_pred ccCCCCCCCCCCceEEEEe
Q 008859 159 IIAPSGSPPKPGASIQLEL 177 (551)
Q Consensus 159 Ll~~~gkp~k~~G~L~lsl 177 (551)
+-.. +--....|+|.+.+
T Consensus 119 l~k~-~~~s~v~G~~~l~~ 136 (137)
T cd08691 119 LGRR-TPTDHVSGQLTFRF 136 (137)
T ss_pred CCcC-CCCCcEEEEEEEEe
Confidence 8433 22334567777654
No 103
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.49 E-value=3.3e-13 Score=120.02 Aligned_cols=66 Identities=33% Similarity=0.531 Sum_probs=57.1
Q ss_pred CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEec-------CCCC-CceeEEEEeeccc
Q 008859 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAHT 146 (551)
Q Consensus 80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~-------d~~g-~~lIG~v~Ipl~~ 146 (551)
+||||++.+.. ...+||++++++.||+|||+|.|.+.. ...|.|+|||. |..+ +++||++.|.++.
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 89999998854 357999999999999999999999975 66899999997 4556 8999999998754
No 104
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=2.9e-13 Score=121.89 Aligned_cols=88 Identities=28% Similarity=0.475 Sum_probs=77.3
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee-eEEee
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VARTR 97 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~-v~rTr 97 (551)
|.|+|++|++|+++|..+. +||||+|.+.+.. ..||+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT~ 39 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRDN 39 (124)
T ss_pred EEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeeccceee
Confidence 7899999999999886553 8999999998754 36899
Q ss_pred ecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (551)
Q Consensus 98 vi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~ 148 (551)
+++++.||+|||+|.|.+..+ ...|.|+|||.+.++ +++||++.|++++..
T Consensus 40 ~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 40 YIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred EEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 999999999999999998765 457999999999997 899999999998775
No 105
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=1.3e-13 Score=167.34 Aligned_cols=119 Identities=22% Similarity=0.450 Sum_probs=101.6
Q ss_pred EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (551)
Q Consensus 15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~ 94 (551)
|-|.|.|+|++|++|. .+ ++ ++||||.|.+++....
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~-~~------------------------------------------~sdPyv~l~~g~~~~~ 2013 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QS-MG------------------------------------------NTNAFCKLTLGNGPPR 2013 (2102)
T ss_pred CCcceEEEEeeccccc-cc-cC------------------------------------------CCCCeEEEEECCCCcc
Confidence 5699999999999997 33 22 2899999999965445
Q ss_pred EeeecCCCCCCeEeeEEEEeecCCC--CeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCce
Q 008859 95 RTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS 172 (551)
Q Consensus 95 rTrvi~ns~nP~WnE~F~i~vah~~--~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~ 172 (551)
||+|++++.||+|||.|+|.+..+. ..+.|+|||+|.|+++.||.+.|++.++..+..+.+||+|.+. |+ ..|+
T Consensus 2014 kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~-~~---k~G~ 2089 (2102)
T PLN03200 2014 QTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPE-SN---KDGS 2089 (2102)
T ss_pred cccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCcc-cc---cCCC
Confidence 9999999999999999998887764 5699999999999988999999999999999999999999643 33 2356
Q ss_pred ---EEEEeeeec
Q 008859 173 ---IQLELKFTP 181 (551)
Q Consensus 173 ---L~lsl~f~p 181 (551)
|.+.++|.+
T Consensus 2090 ~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2090 SRTLEIEFQWSN 2101 (2102)
T ss_pred cceEEEEEEecC
Confidence 999999865
No 106
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.43 E-value=1.1e-12 Score=139.51 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=99.8
Q ss_pred chHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhh-hcCCeEEEEEeCCCCccCccCCCCC
Q 008859 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 242 ~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka-~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
.+.+.++++|.+||++|+|+++.|-|.. +.+.. ......|.++|.++| +|||+||||+ +..+....
T Consensus 216 ~~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~---~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~------ 282 (369)
T PHA03003 216 LDADVVLHKIKSAKKSIDLELLSLVPVI---REDDK---TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV------ 282 (369)
T ss_pred cCHHHHHHHHHHHhhEEEEEEeccccEE---eeCCC---CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc------
Confidence 3578999999999999999999764432 22220 111358899998885 9999999997 76533210
Q ss_pred CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (551)
Q Consensus 321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt 400 (551)
. .....+.|...|+++.+ + ..++ .+.+|+|++|||++ +||+||.|+....+..
T Consensus 283 -~----~~~~~~~L~~~G~~~~i----~---vri~-------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~ 335 (369)
T PHA03003 283 -Y----SMASVKSLQALCVGNDL----S---VKVF-------RIPNNTKLLIVDDE--------FAHITSANFDGTHYLH 335 (369)
T ss_pred -h----hhhHHHHHHHcCCCCCc----e---Eeee-------cCCCCceEEEEcCC--------EEEEeccccCchhhcc
Confidence 0 12334556667754210 0 0010 12279999999998 9999999997743431
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhc
Q 008859 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (551)
Q Consensus 401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~ 460 (551)
..|.++. ..+|++|.++...|++.|+...
T Consensus 336 ------------------------------~~e~~~~-~~~~~~a~~l~~~F~~dW~~~~ 364 (369)
T PHA03003 336 ------------------------------HAFVSFN-TIDKELVKELSAIFERDWTSSY 364 (369)
T ss_pred ------------------------------CCCeEEe-cCChhHHHHHHHHHHHHhCCcc
Confidence 1234433 5689999999999999998654
No 107
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.39 E-value=1e-12 Score=144.83 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=110.8
Q ss_pred ecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCC
Q 008859 231 PLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKT 310 (551)
Q Consensus 231 ~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~ 310 (551)
.+.+|+....+.+++.+.++|.+||++|||+++. ++ |+ ..+.++|+.+|++||+|+||+ +..+
T Consensus 333 ~~~sgp~~~~~~i~~~~l~~I~~A~~~I~I~tpY------f~--pd--------~~l~~aL~~Aa~rGV~Vrii~-p~~~ 395 (509)
T PRK12452 333 IVASGPSSDDKSIRNTLLAVMGSAKKSIWIATPY------FI--PD--------QETLTLLRLSAISGIDVRILY-PGKS 395 (509)
T ss_pred EEeCCCCchhHHHHHHHHHHHHHhhhEEEEECCc------cC--CC--------HHHHHHHHHHHHcCCEEEEEc-CCCC
Confidence 3445555544689999999999999999999863 34 22 588999999999999999997 6543
Q ss_pred ccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEce
Q 008859 311 SHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGG 390 (551)
Q Consensus 311 s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG 390 (551)
.... .........+.+..+||++.... + ...|+|++|||++ +|++|+
T Consensus 396 D~~~--------~~~a~~~~~~~L~~aGv~I~~y~--~---------------~~lHaK~~ivD~~--------~a~vGS 442 (509)
T PRK12452 396 DSII--------SDQASQSYFTPLLKAGASIYSYK--D---------------GFMHAKIVLVDDK--------IATIGT 442 (509)
T ss_pred ChHH--------HHHHHHHHHHHHHHcCCEEEEec--C---------------CCeeeeEEEECCC--------EEEEeC
Confidence 2210 00001233455667899987421 1 1249999999998 999999
Q ss_pred eeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcC
Q 008859 391 IDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (551)
Q Consensus 391 ~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~ 461 (551)
.|+...-+ +..|.+.++..+++.|.++...|++.|+.+..
T Consensus 443 ~Nld~RS~-------------------------------~~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~~ 482 (509)
T PRK12452 443 ANMDVRSF-------------------------------ELNYEIISVLYESETVHDIKRDFEDDFKHSTE 482 (509)
T ss_pred cccCHhHh-------------------------------hhhhhccEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 99976222 13567999999999999999999999987643
No 108
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.38 E-value=2.8e-12 Score=112.53 Aligned_cols=69 Identities=33% Similarity=0.560 Sum_probs=59.9
Q ss_pred CCcEEEEEECCe-----eeEEeeecCCCCCCeEeeEEEEeecCC-----CCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (551)
Q Consensus 80 sDpYvtV~l~~~-----~v~rTrvi~ns~nP~WnE~F~i~vah~-----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~ 148 (551)
+||||+|++.+. .++||++++++.||+|| .|.|++... ...|.|+|||.+.++ +++||++.++++++.
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 899999998542 46899999999999999 799886432 467999999999998 899999999999998
Q ss_pred c
Q 008859 149 T 149 (551)
Q Consensus 149 ~ 149 (551)
.
T Consensus 100 ~ 100 (110)
T cd04047 100 K 100 (110)
T ss_pred c
Confidence 4
No 109
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.35 E-value=2.9e-12 Score=105.43 Aligned_cols=81 Identities=44% Similarity=0.762 Sum_probs=69.6
Q ss_pred EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe--eeEEe
Q 008859 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART 96 (551)
Q Consensus 19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~--~v~rT 96 (551)
|.|+|++|++|+..+..+. .||||++.+.+. ...+|
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T 38 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT 38 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence 7899999999997664332 789999999874 33899
Q ss_pred eecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEE
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAA 141 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~ 141 (551)
++++++.+|.|+|.|.|++..+ ...|.|+|||.+.++ +++||.++
T Consensus 39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 9999999999999999995544 556999999999999 89999985
No 110
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-12 Score=141.14 Aligned_cols=126 Identities=26% Similarity=0.392 Sum_probs=110.0
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
..|.|+|.||+|||..+..+ ++||||+|.+++..+.||
T Consensus 5 ~sl~vki~E~knL~~~~~~g------------------------------------------~~D~yC~v~lD~E~v~RT 42 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSG------------------------------------------MRDCYCTVNLDQEEVCRT 42 (800)
T ss_pred cceeEEEeecccCCCCCCCC------------------------------------------CcCcceEEeecchhhhhh
Confidence 46899999999999876543 289999999999999999
Q ss_pred eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEE
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~l 175 (551)
.++..+..|.|.|.|.|.+......|.|.|||.| ++ |+.||.+.|.=++|..-...+.||.|. +-....+..|+++|
T Consensus 43 ~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~-~VD~dsEVQG~v~l 120 (800)
T KOG2059|consen 43 ATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQ-PVDPDSEVQGKVHL 120 (800)
T ss_pred hhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceecc-ccCCChhhceeEEE
Confidence 9999999999999999999999999999999999 66 999999999999998777889999983 22223457899999
Q ss_pred EeeeeccCCCC
Q 008859 176 ELKFTPCDKNP 186 (551)
Q Consensus 176 sl~f~p~~~~~ 186 (551)
++++.+.....
T Consensus 121 ~l~~~e~~~~~ 131 (800)
T KOG2059|consen 121 ELALTEAIQSS 131 (800)
T ss_pred EEEeccccCCC
Confidence 99999887654
No 111
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.34 E-value=4.3e-13 Score=139.03 Aligned_cols=104 Identities=27% Similarity=0.459 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~ 92 (551)
..|.|+|.+|+||-+||..+. |||||.+.+-. ..
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD~~~~s 217 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDPKNES 217 (683)
T ss_pred ceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccCCcchh
Confidence 469999999999999997664 99999999943 45
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC--CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCC
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~--~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~ 163 (551)
..+|++|+.+.||+|||+|.|.+... ...|.++|||.|..+ .+++|...+.+++|. .+.+++||.||...
T Consensus 218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsqe 290 (683)
T KOG0696|consen 218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQE 290 (683)
T ss_pred hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhhh
Confidence 67999999999999999999999887 456999999999998 899999999999998 56789999998653
No 112
>PRK13912 nuclease NucT; Provisional
Probab=99.31 E-value=5.4e-11 Score=113.87 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=97.5
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
.++++.+.++|++|+++|+|+.|.+. ...+.+.|.++++|||+|+||+ |...+...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~-----------------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFT-----------------HKDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEc-----------------hHHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 35688999999999999999988541 2479999999999999999997 87654320
Q ss_pred CcccCCcHHHHhHhc-CCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccC
Q 008859 321 GVMATHDEETKKFFK-HSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (551)
Q Consensus 321 g~~~t~~~~~~~~~~-~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~D 399 (551)
+..+..++. ..++++.... +.. ... ......+|+|++|||++ ++|+|+.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~~--~~~-~~~-----~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLLK--GLK-AKN-----GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEec--Ccc-ccC-----cccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 112222332 3466655321 110 000 01123579999999998 999999999984433
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHhh
Q 008859 400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (551)
Q Consensus 400 t~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~~ 459 (551)
. =+++.+.++.| .+.++.+.|.+.|...
T Consensus 146 ~--------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 N--------------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred c--------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1 03456677777 5688999999999764
No 113
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.29 E-value=2.2e-11 Score=101.58 Aligned_cols=80 Identities=34% Similarity=0.646 Sum_probs=71.9
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecC-CCCeEEEEEEecCCCC-CceeEEEEeeccccc-ccceeeeE
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW 156 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah-~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~-~g~~i~~w 156 (551)
.+|||++.+.+...+||+++.++.||.|+|.|.|++.. ....+.|+|++.+..+ ..+||.+.+++.++. .......|
T Consensus 20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence 79999999988566899999999999999999999988 6678999999999887 899999999999998 67777888
Q ss_pred EEc
Q 008859 157 YDI 159 (551)
Q Consensus 157 ~~L 159 (551)
++|
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 875
No 114
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.27 E-value=3.3e-11 Score=101.21 Aligned_cols=74 Identities=42% Similarity=0.734 Sum_probs=66.5
Q ss_pred CCcEEEEEECCe--eeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859 80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (551)
Q Consensus 80 sDpYvtV~l~~~--~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i 153 (551)
.+|||++.+... ..+||+++.++.||.|||.|.|++... ...|.|+|++.+..+ +.+||.+.+++.++..+...
T Consensus 21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCccc
Confidence 799999999876 578999999999999999999999998 778999999999887 89999999999998866543
No 115
>PLN02223 phosphoinositide phospholipase C
Probab=99.15 E-value=3.5e-10 Score=123.01 Aligned_cols=96 Identities=23% Similarity=0.421 Sum_probs=81.3
Q ss_pred CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCCC-eEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (551)
Q Consensus 80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~~-~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i 153 (551)
.||||+|.+.+ ....||.|..|+.||+|||+|.|++..+.. -|.|+|+|.|..+ +++||++.||+..|..|-
T Consensus 435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-- 512 (537)
T PLN02223 435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI-- 512 (537)
T ss_pred CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence 79999999965 234588888889999999999999877754 4799999999876 899999999999999884
Q ss_pred eeEEEccCCCCCCCCCCceEEEEeee
Q 008859 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (551)
Q Consensus 154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f 179 (551)
++++|++..|++.. ..+|.+.+.|
T Consensus 513 -R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 513 -RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred -eeEeccCCCcCCCC-CceEEEEEEe
Confidence 77899999999874 4677777765
No 116
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=9.8e-11 Score=126.23 Aligned_cols=113 Identities=32% Similarity=0.536 Sum_probs=93.4
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~ 91 (551)
+|.|.|.|++|++|+.|+..+. +||||++.+-. .
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~~~~~ 334 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDGDKRL 334 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecCCcee
Confidence 5999999999999998886543 89999999832 4
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~ 167 (551)
...+|.+.+++.||+|||+|.|.|... ...|+|+|+|.|.+| .++||.+.+.... +|.....|..++...++|.
T Consensus 335 ~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 335 SKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred eeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 557999999999999999999988754 346899999999999 7899988887665 6667888999988877776
Q ss_pred CCCce
Q 008859 168 KPGAS 172 (551)
Q Consensus 168 k~~G~ 172 (551)
.....
T Consensus 413 ~~wh~ 417 (421)
T KOG1028|consen 413 AQWHS 417 (421)
T ss_pred eeeEe
Confidence 54443
No 117
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.09 E-value=8.6e-10 Score=98.37 Aligned_cols=124 Identities=21% Similarity=0.388 Sum_probs=84.0
Q ss_pred HHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCccc-C
Q 008859 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA-T 325 (551)
Q Consensus 247 l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~-t 325 (551)
|.++|.+|+++|+|+.+.+ . ...+.+.|..++++||+|+|++ +...... +.+. .
T Consensus 1 l~~~i~~A~~~i~i~~~~~------~-----------~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYI------T-----------DPDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS------------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHH
T ss_pred CHHHHhccCCEEEEEEEec------C-----------cHHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhH
Confidence 5789999999999999853 1 2477888888999999999998 4422100 0000 0
Q ss_pred CcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccc
Q 008859 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405 (551)
Q Consensus 326 ~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l 405 (551)
......+.++..|+++. .+.|.|++|||++ ++++|+.|++...|.
T Consensus 56 ~~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~------ 100 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR------ 100 (126)
T ss_dssp HHHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC------
T ss_pred HHHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc------
Confidence 11233344466777754 1449999999987 999999999985441
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHH-HHHHHHHHHHHH
Q 008859 406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW 456 (551)
Q Consensus 406 ~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPa-a~dv~~~F~~rW 456 (551)
-.+++.+.+++|. +..+.+.|.+.|
T Consensus 101 --------------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 --------------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp --------------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred --------------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2369999999996 999999999889
No 118
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.09 E-value=4.6e-10 Score=128.63 Aligned_cols=132 Identities=26% Similarity=0.434 Sum_probs=105.4
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT 96 (551)
|.|.|+|.+|++|...+.+-. ++.|||+++...+...|||
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~gkT 475 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVIGKT 475 (1227)
T ss_pred EEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccCCcc
Confidence 889999999999986552211 1389999999999888999
Q ss_pred eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeee-EEEccCCCCCCCCCCceEE
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR-WYDIIAPSGSPPKPGASIQ 174 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~-w~~Ll~~~gkp~k~~G~L~ 174 (551)
++.+|+.||+|||+|.+.+..-...|.++|||.+.+. +.++|++.|++..+........ -+.++ .+.+ ..|+|.
T Consensus 476 ~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k---~vGrL~ 551 (1227)
T COG5038 476 RVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTK---NVGRLT 551 (1227)
T ss_pred ceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCc---cceEEE
Confidence 9999999999999999999988889999999966655 9999999999988875433332 44442 3333 459999
Q ss_pred EEeeeeccCCCCceeccc
Q 008859 175 LELKFTPCDKNPLYRQGI 192 (551)
Q Consensus 175 lsl~f~p~~~~~~~~~gi 192 (551)
..++|+|...+..-..|.
T Consensus 552 yDl~ffp~~e~k~~~~~s 569 (1227)
T COG5038 552 YDLRFFPVIEDKKELKGS 569 (1227)
T ss_pred EeeeeecccCCccccccc
Confidence 999999998766544443
No 119
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.08 E-value=6.1e-10 Score=122.51 Aligned_cols=150 Identities=19% Similarity=0.148 Sum_probs=105.6
Q ss_pred eecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCC
Q 008859 230 IPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309 (551)
Q Consensus 230 ~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~ 309 (551)
..+.+|+.+..+.+.+.+.++|.+||++|+|++. |++ | +..+.++|+.+|++||+|+|++ +..
T Consensus 306 qi~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~tp------Yfi--p--------~~~i~~aL~~Aa~rGV~Vril~-p~~ 368 (483)
T PRK01642 306 QVIASGPGDPEETIHQFLLTAIYSARERLWITTP------YFV--P--------DEDLLAALKTAALRGVDVRIII-PSK 368 (483)
T ss_pred EEEeCCCCChhhHHHHHHHHHHHHhccEEEEEcC------CcC--C--------CHHHHHHHHHHHHcCCEEEEEe-CCC
Confidence 3445566655567888899999999999999985 234 2 2589999999999999999998 654
Q ss_pred CccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEc
Q 008859 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIG 389 (551)
Q Consensus 310 ~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvG 389 (551)
..... .........+.+...||++... .. .-.|.|++|||++ ++++|
T Consensus 369 ~d~~~--------~~~~~~~~~~~L~~~Gv~I~~y---~~--------------~~~HaK~~ivD~~--------~~~vG 415 (483)
T PRK01642 369 NDSLL--------VFWASRAFFTELLEAGVKIYRY---EG--------------GLLHTKSVLVDDE--------LALVG 415 (483)
T ss_pred CCcHH--------HHHHHHHHHHHHHHcCCEEEEe---CC--------------CceEeEEEEECCC--------EEEee
Confidence 32210 0000122234455789998742 11 1249999999998 99999
Q ss_pred eeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHhhcC
Q 008859 390 GIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK 461 (551)
Q Consensus 390 G~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~~~~ 461 (551)
+.|+...-+.. + +.+.+.+.+| .+.++.+.|++.|..+..
T Consensus 416 S~N~d~rS~~~---------------N-----------------~E~~~~i~d~~~~~~l~~~f~~d~~~s~~ 456 (483)
T PRK01642 416 TVNLDMRSFWL---------------N-----------------FEITLVIDDTGFAADLAAMQEDYFARSRE 456 (483)
T ss_pred CCcCCHhHHhh---------------h-----------------hcceEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 99996522210 1 3677888888 589999999999987543
No 120
>PLN02952 phosphoinositide phospholipase C
Probab=99.06 E-value=1.4e-09 Score=120.64 Aligned_cols=96 Identities=23% Similarity=0.455 Sum_probs=80.3
Q ss_pred CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (551)
Q Consensus 80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i 153 (551)
.||||+|.+.+ ....||+++.|+.||+|||+|.|++..+. .-|.|+|+|.|..+ +++||++.||+..|..|-
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 59999999965 34459999999999999999999977764 45799999999887 899999999999999885
Q ss_pred eeEEEccCCCCCCCCCCceEEEEeee
Q 008859 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (551)
Q Consensus 154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f 179 (551)
+|++|.+..|++.. ...|.+.+.|
T Consensus 575 -R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 575 -RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred -eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 59999999998763 4556666554
No 121
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.8e-10 Score=122.55 Aligned_cols=119 Identities=26% Similarity=0.514 Sum_probs=95.9
Q ss_pred EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (551)
Q Consensus 15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~ 94 (551)
+...+.++|+.|.+|...|-.++ |||||++.++..+ .
T Consensus 293 wsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk-r 329 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK-R 329 (1283)
T ss_pred cceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-h
Confidence 34568899999999987665443 9999999998866 5
Q ss_pred EeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCC------------CCceeEEEEeecccccccceeeeEEEccCC
Q 008859 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAP 162 (551)
Q Consensus 95 rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~------------g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~ 162 (551)
|||+|....||+|||.|+|.|.+....+.+.|||.|.- +++|+|+..|.+..+. | +.+-||.|-..
T Consensus 330 rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynlekr 407 (1283)
T KOG1011|consen 330 RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLEKR 407 (1283)
T ss_pred hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchhhc
Confidence 99999999999999999999999888999999998632 4899999999998774 4 57789999544
Q ss_pred CCCCCCCCceEEEEeee
Q 008859 163 SGSPPKPGASIQLELKF 179 (551)
Q Consensus 163 ~gkp~k~~G~L~lsl~f 179 (551)
..|. ...|.|++.+..
T Consensus 408 tdks-avsgairlhisv 423 (1283)
T KOG1011|consen 408 TDKS-AVSGAIRLHISV 423 (1283)
T ss_pred cchh-hccceEEEEEEE
Confidence 4443 356777666654
No 122
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.03 E-value=6.2e-10 Score=118.72 Aligned_cols=170 Identities=25% Similarity=0.428 Sum_probs=123.5
Q ss_pred EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (551)
Q Consensus 15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~ 94 (551)
+.|.|-|+|..||+||-||..+. +.|.||.|.+...+ .
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~ 38 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F 38 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence 36889999999999999997664 37999999999977 6
Q ss_pred EeeecCCCCCCeEe-eEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccc----------ccceeeeEEEc
Q 008859 95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA----------TGELISRWYDI 159 (551)
Q Consensus 95 rTrvi~ns~nP~Wn-E~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~----------~g~~i~~w~~L 159 (551)
+|-|..++.||.|| +-|.|.|... ...|.+++.|.|..+ .+-||.|.|.++.+. .|..+++|||+
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 99999999999999 7799988764 567999999999998 799999999998775 24568999999
Q ss_pred cCCCCCCCCCCceEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCC
Q 008859 160 IAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239 (551)
Q Consensus 160 l~~~gkp~k~~G~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~ 239 (551)
.+.-.. ..|+|.|-++.--......|.+. ..||.+..... +-+-..+.+..||+.+.++.+.+.|+
T Consensus 119 fdtihg---irgeinvivkvdlfndlnkf~qs------scgvkffctts-----ip~~yra~iihgfveelvvnddpeyq 184 (1169)
T KOG1031|consen 119 FDTIHG---IRGEINVIVKVDLFNDLNKFPQS------SCGVKFFCTTS-----IPFCYRAQIIHGFVEELVVNDDPEYQ 184 (1169)
T ss_pred ceeccc---ccceeEEEEEEeehhhhhhcccc------cccceeeeccc-----CccceeehhhhhhhHHhccCCCcchh
Confidence 876432 46888888764332222222221 12222211111 11112345566888888888888886
Q ss_pred C
Q 008859 240 P 240 (551)
Q Consensus 240 ~ 240 (551)
+
T Consensus 185 w 185 (1169)
T KOG1031|consen 185 W 185 (1169)
T ss_pred h
Confidence 3
No 123
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.00 E-value=2.2e-09 Score=118.88 Aligned_cols=96 Identities=22% Similarity=0.449 Sum_probs=81.2
Q ss_pred CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (551)
Q Consensus 80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i 153 (551)
.||||+|.+-+ ....||+|..|+.||+|||+|.|++..+. +-|.|.|+|.|..+ +++||+..||+..|..|-
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-- 573 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI-- 573 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence 69999999954 23469999989999999999999987774 56799999999876 899999999999999884
Q ss_pred eeEEEccCCCCCCCCCCceEEEEeee
Q 008859 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (551)
Q Consensus 154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f 179 (551)
+.++|++..|.+.. ...|.+.+.|
T Consensus 574 -R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 574 -HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred -ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 56899999999874 4678877766
No 124
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.96 E-value=2.3e-09 Score=92.84 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=57.5
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccc
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~ 148 (551)
+||||+|.+++...+||++ +.||.|||.|.|++. ...+++|+|||...-..--||..-|++++|.
T Consensus 23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 7999999999988899988 699999999999995 5778999999986544678999999998887
No 125
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.96 E-value=5.9e-09 Score=115.34 Aligned_cols=96 Identities=23% Similarity=0.476 Sum_probs=81.2
Q ss_pred CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (551)
Q Consensus 80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i 153 (551)
.||||+|.+.+ ....||+++.|+.||+|||+|.|.+..+. +-|.|+|+|.|..+ +++||+..||+..|..|-
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-- 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-- 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence 69999999964 33469999999999999999999987764 55799999998876 899999999999999884
Q ss_pred eeEEEccCCCCCCCCCCceEEEEeee
Q 008859 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (551)
Q Consensus 154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f 179 (551)
+.++|.+..|.+.. ...|.+.+.|
T Consensus 557 -R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 557 -RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred -ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 57899999999874 4678777765
No 126
>PLN02228 Phosphoinositide phospholipase C
Probab=98.94 E-value=7e-09 Score=114.42 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=83.5
Q ss_pred CCcEEEEEECC----eeeEEeeecCCCCCCeE-eeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccce
Q 008859 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (551)
Q Consensus 80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~W-nE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~ 152 (551)
.||||+|.+.+ ....||++++|+.||+| ||+|.|++..+. +-|.|+|+|.|..+ +++||++.||++.|..|-
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY- 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV- 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence 79999999954 23469999999999999 999999987764 56799999998776 899999999999999883
Q ss_pred eeeEEEccCCCCCCCCCCceEEEEeeeecc
Q 008859 153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (551)
Q Consensus 153 i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~ 182 (551)
+.++|++..|++.. .+.|.+.+.+.+.
T Consensus 537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 56899999999874 5789988887654
No 127
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.93 E-value=5.5e-09 Score=112.53 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=95.1
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
..+.+.+.++|.+|+++|+|++. |++ | +..|.+.|..+|+|||+|+||+ +..++...
T Consensus 205 ~~i~~~~~~~i~~A~~~I~I~tp------Yf~--p--------~~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~------ 261 (411)
T PRK11263 205 DDIERHYLKALRQARREVIIANA------YFF--P--------GYRLLRALRNAARRGVRVRLIL-QGEPDMPI------ 261 (411)
T ss_pred HHHHHHHHHHHHHhceEEEEEec------CcC--C--------CHHHHHHHHHHHHCCCEEEEEe-CCCCCcHH------
Confidence 46778899999999999999974 233 2 2689999999999999999998 65533210
Q ss_pred CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (551)
Q Consensus 321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt 400 (551)
+..-.+.....+..+||++.. +.. ..-|.|++|||++ +++||+.||.. |...
T Consensus 262 --~~~a~~~~~~~Ll~~Gv~I~~---y~~--------------~~lHaK~~viD~~--------~~~vGS~Nld~-rS~~ 313 (411)
T PRK11263 262 --VRVGARLLYNYLLKGGVQIYE---YCR--------------RPLHGKVALMDDH--------WATVGSSNLDP-LSLS 313 (411)
T ss_pred --HHHHHHHHHHHHHHCCCEEEE---ecC--------------CCceeEEEEECCC--------EEEEeCCcCCH-HHhh
Confidence 000112334556678999763 111 1249999999998 99999999966 3221
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHH-HHHHHHHHHHHHH
Q 008859 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWR 457 (551)
Q Consensus 401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPa-a~dv~~~F~~rW~ 457 (551)
. + ..+.+.|.+|. +..+...|++.+.
T Consensus 314 l--------------N-----------------~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 314 L--------------N-----------------LEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred h--------------h-----------------hhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 0 1 25566777774 5788888999886
No 128
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.92 E-value=3.5e-10 Score=74.85 Aligned_cols=27 Identities=59% Similarity=1.015 Sum_probs=18.9
Q ss_pred cccCccceEEEccCCCCCCcceEEEEceeeccccc
Q 008859 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (551)
Q Consensus 363 ~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R 397 (551)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 46899999999998 9999999999865
No 129
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.90 E-value=6.4e-09 Score=115.47 Aligned_cols=98 Identities=27% Similarity=0.516 Sum_probs=83.0
Q ss_pred CCcEEEEEECC----eeeEEeeec-CCCCCCeEeeEEEEeecCCCC-eEEEEEEecCCCC-CceeEEEEeecccccccce
Q 008859 80 SDPYVTVVVPQ----ATVARTRVL-KNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (551)
Q Consensus 80 sDpYvtV~l~~----~~v~rTrvi-~ns~nP~WnE~F~i~vah~~~-~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~ 152 (551)
+||||.|.+.+ ....+|+++ .|+-||.|+|+|.|++.-|.- -|.|.|.|.|..+ ++|+|+..||++.|..|-
T Consensus 641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy- 719 (746)
T KOG0169|consen 641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY- 719 (746)
T ss_pred CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce-
Confidence 79999999966 445799955 559999999999999998854 4799999999999 999999999999999883
Q ss_pred eeeEEEccCCCCCCCCCCceEEEEeeeec
Q 008859 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (551)
Q Consensus 153 i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p 181 (551)
+-+||++..|+.. ....|.|.+.+.+
T Consensus 720 --RhVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 720 --RHVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred --eeeeecCCCCccc-cceeEEEEEEEec
Confidence 4578989889876 4678888888754
No 130
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.90 E-value=8e-09 Score=94.18 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=62.9
Q ss_pred CCcEEEEEECC--eeeEEeeecCCCCC--CeEeeEEEEeecCC------------------------CCeEEEEEEecCC
Q 008859 80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV 131 (551)
Q Consensus 80 sDpYvtV~l~~--~~v~rTrvi~ns~n--P~WnE~F~i~vah~------------------------~~~l~f~Vkd~d~ 131 (551)
+||||++.+.+ ....+|.|..++.| |.||++|.|++..+ ...|.++|||.|.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 89999999976 46689999999988 99999999987762 2468999999999
Q ss_pred CC-CceeEEEEeecccccccc
Q 008859 132 FG-AQIIGTAAIPAHTIATGE 151 (551)
Q Consensus 132 ~g-~~lIG~v~Ipl~~l~~g~ 151 (551)
++ +++||.+.+++..+..+.
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcceEEEEEhhhccccc
Confidence 98 899999999999887654
No 131
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.82 E-value=9.3e-09 Score=118.15 Aligned_cols=123 Identities=25% Similarity=0.393 Sum_probs=98.5
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r 95 (551)
-|.|+|.+..|.||++-|..+. +||||.+.+.+..+.+
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~vyk 1076 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSVYK 1076 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceeccc
Confidence 5889999999999988776553 8999999999998999
Q ss_pred eeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceE
Q 008859 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (551)
Q Consensus 96 Trvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L 173 (551)
|.+++.+.||+|||+|.+++..-. ..+++.|+|.|.-+ +++||.+.|+++.+..+..-..-.++ +... -....|.+
T Consensus 1077 tkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~~g~~ 1154 (1227)
T COG5038 1077 TKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVLDGTL 1154 (1227)
T ss_pred ccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEecccEe
Confidence 999999999999999999988654 45899999999887 89999999999999877555444444 3322 23456666
Q ss_pred EEEeeeecc
Q 008859 174 QLELKFTPC 182 (551)
Q Consensus 174 ~lsl~f~p~ 182 (551)
+....|.+.
T Consensus 1155 ~~~~~~r~~ 1163 (1227)
T COG5038 1155 HPGFNFRSK 1163 (1227)
T ss_pred ecceecchh
Confidence 666665554
No 132
>PHA02820 phospholipase-D-like protein; Provisional
Probab=98.80 E-value=3.7e-08 Score=106.52 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=96.6
Q ss_pred HHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHH-hhhcCCeEEEEEeCCCCccCccCCCCCCc
Q 008859 244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY-KSEEGVRVLLLVWDDKTSHDKLGVKTPGV 322 (551)
Q Consensus 244 ~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~-ka~~GV~V~iLvwD~~~s~~~~~~~~~g~ 322 (551)
.+.+..+|.+||++|||++-.|-|.++...++.+ -...+.++|.+ +++|||+||||+ -...... ..
T Consensus 220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~-----yw~~i~~AL~~AA~~RGV~VriLv-p~~~d~~-------~~ 286 (424)
T PHA02820 220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKIL-----FWPYIEDELRRAAIDRKVSVKLLI-SCWQRSS-------FI 286 (424)
T ss_pred HHHHHHHHHHHhhEEEEEEccccceeeccCCccc-----chHHHHHHHHHHHHhCCCEEEEEE-eccCCCC-------cc
Confidence 5789999999999999999977776443322221 12588999986 667999999998 3221111 01
Q ss_pred ccCCcHHHHhHhcCCCcEEE--ecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859 323 MATHDEETKKFFKHSSVNCV--LAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (551)
Q Consensus 323 ~~t~~~~~~~~~~~~~v~~~--l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt 400 (551)
+. ........|...|+++. +. .+|.. .. ......-+|.|++|||+ .|+||..|+....+..
T Consensus 287 ~~-a~~~~l~~L~~~gv~I~Vk~y-~~p~~-~~-----~~~~~~f~HaK~~vvD~---------~a~IGTsN~D~rsf~~ 349 (424)
T PHA02820 287 MR-NFLRSIAMLKSKNINIEVKLF-IVPDA-DP-----PIPYSRVNHAKYMVTDK---------TAYIGTSNWTGNYFTD 349 (424)
T ss_pred HH-HHHHHHHHHhccCceEEEEEE-EcCcc-cc-----cCCcceeeeeeEEEEcc---------cEEEECCcCCHHHHhc
Confidence 10 00112223345677752 11 12210 00 01112346999999995 8999999997644431
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeC----HHHHHHHHHHHHHHHhhcC
Q 008859 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG----PAAYDVLINFEQRWRKATK 461 (551)
Q Consensus 401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~G----Paa~dv~~~F~~rW~~~~~ 461 (551)
. .-+.+-+.. ..+.+|...|+++|+....
T Consensus 350 ---------------n-----------------~ev~~~i~~~~~~~~~~~l~~~F~~D~~s~y~ 382 (424)
T PHA02820 350 ---------------T-----------------CGVSINITPDDGLGLRQQLEDIFIRDWNSKYS 382 (424)
T ss_pred ---------------c-----------------CcEEEEEecCCcHHHHHHHHHHHHHhcCCCcc
Confidence 0 134444433 5899999999999997643
No 133
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.53 E-value=3.6e-07 Score=101.32 Aligned_cols=102 Identities=25% Similarity=0.393 Sum_probs=79.8
Q ss_pred CCcEEEEEECCe-----eeEEeeecCCCCCCeEe-eEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccc
Q 008859 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWN-EHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (551)
Q Consensus 80 sDpYvtV~l~~~-----~v~rTrvi~ns~nP~Wn-E~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~ 151 (551)
.-|+|.|.+.++ +..+|.|+.|+.||+|| |.|+|.+..|. .-|.|.|+|.|+|+ ..|||++..|+..|.+|-
T Consensus 1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc
Confidence 459999999663 44567778899999999 99999988874 56899999999999 589999999999999883
Q ss_pred eeeeEEEccCCCCCCCCCCceEEEEeeeeccCCC
Q 008859 152 LISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (551)
Q Consensus 152 ~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~~ 185 (551)
+-+||-+.-.+.. ....|.|.++..|+...
T Consensus 1165 ---RsVpLkN~ySEdl-ELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1165 ---RSVPLKNGYSEDL-ELASLLVFIEMRPVLES 1194 (1267)
T ss_pred ---eeeecccCchhhh-hhhhheeeeEeccccCc
Confidence 3467744433333 24678888888777553
No 134
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.41 E-value=4.8e-06 Score=87.74 Aligned_cols=169 Identities=17% Similarity=0.240 Sum_probs=107.4
Q ss_pred eecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCC
Q 008859 230 IPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309 (551)
Q Consensus 230 ~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~ 309 (551)
-....|+. .-.++|...|.+|+++|||..-.-.|......+.. -+.|.++|.++|-|||+||+||-.-.
T Consensus 268 ~~~~~grt----~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~~~-------fw~iDdaiR~aa~RgV~vR~lvs~~~ 336 (456)
T KOG3603|consen 268 PLNPSGRT----WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKNHR-------FWEIDDAIRRAAVRGVKVRLLVSCWK 336 (456)
T ss_pred CCCCCCCc----hhHHHHHHHHHHHhhheeeeehhccchheeecCcc-------hhhhhHHHHHHhhcceEEEEEEeccC
Confidence 33445543 35899999999999999998877666655444322 35999999999999999999993222
Q ss_pred CccCccCCCCCCcccCCcHHHHhHhcCCCcEEEe--cCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEE
Q 008859 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (551)
Q Consensus 310 ~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l--~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vaf 387 (551)
-+... ..+.+.. -+...+..++..|+|.+ .|.... . .+.....+|.|.+|-+. .||
T Consensus 337 ~~~~~----m~~~L~S-Lq~l~~~~~~~~iqvk~f~VP~~~~--~------~ip~~Rv~HnKymVTe~---------aay 394 (456)
T KOG3603|consen 337 HSEPS----MFRFLRS-LQDLSDPLENGSIQVKFFIVPQTNI--E------KIPFARVNHNKYMVTES---------AAY 394 (456)
T ss_pred CCCch----HHHHHHH-HHHhcCccccCceEEEEEEeCCCcc--c------cCchhhhccceeEEeec---------cee
Confidence 11110 0000000 00111223455666654 444321 1 23345678999999998 899
Q ss_pred EceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEE---EeCHHHHHHHHHHHHHHHhhcC
Q 008859 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR---LDGPAAYDVLINFEQRWRKATK 461 (551)
Q Consensus 388 vGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~---i~GPaa~dv~~~F~~rW~~~~~ 461 (551)
+|--|.+.++|-. ..|. -+-++ -.|+++.++...|+.+|+...-
T Consensus 395 IGTSNws~dYf~~------------------------TaG~------~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 395 IGTSNWSGDYFTS------------------------TAGT------AIVVRQTPHKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred eeccCCCccceec------------------------cCce------EEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence 9999999876642 0110 01111 3578999999999999998664
No 135
>PRK05443 polyphosphate kinase; Provisional
Probab=98.41 E-value=2.6e-06 Score=96.92 Aligned_cols=141 Identities=17% Similarity=0.133 Sum_probs=104.0
Q ss_pred chHHHHHHHHHhccc-----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccC
Q 008859 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (551)
Q Consensus 242 ~~~~~l~~aI~~A~~-----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~ 316 (551)
+-|+-+.+.|++|.+ .|.++-|.+. .+..+.++|..+|++||+|++|| +...-
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~----------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~kar----- 405 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTS----------------KDSPIVDALIEAAENGKQVTVLV-ELKAR----- 405 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEec----------------CCHHHHHHHHHHHHcCCEEEEEE-ccCcc-----
Confidence 458888999999998 8999999541 24799999999999999999998 54421
Q ss_pred CCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecccc
Q 008859 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (551)
Q Consensus 317 ~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~ 396 (551)
+....+....+.|+.+||+++. .++ .+..|.|+++||.+..+ +-+-++++|+.|+...
T Consensus 406 -----fde~~n~~~~~~L~~aGv~V~y--~~~--------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~ 463 (691)
T PRK05443 406 -----FDEEANIRWARRLEEAGVHVVY--GVV--------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNYNPK 463 (691)
T ss_pred -----ccHHHHHHHHHHHHHcCCEEEE--ccC--------------CccceeEEEEEEeecCC-ceeEEEEEcCCCCCcc
Confidence 1111234456677889999864 111 12459999999986333 3334899999999761
Q ss_pred ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEE-eCHHHHHHHHHHHHHHHh
Q 008859 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL-DGPAAYDVLINFEQRWRK 458 (551)
Q Consensus 397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i-~GPaa~dv~~~F~~rW~~ 458 (551)
. ...|.|+.+.. .+..+.|+...|..-|..
T Consensus 464 -s-------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~ 494 (691)
T PRK05443 464 -T-------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGY 494 (691)
T ss_pred -h-------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCc
Confidence 1 13678999984 556899999999999865
No 136
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=98.30 E-value=6.5e-06 Score=93.31 Aligned_cols=142 Identities=17% Similarity=0.158 Sum_probs=102.3
Q ss_pred chHHHHHHHHHhccc-----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccC
Q 008859 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (551)
Q Consensus 242 ~~~~~l~~aI~~A~~-----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~ 316 (551)
+-|+.+.+.|++|.+ +|.++-|.+. .+..+.+.|.++|++|++|+++| +-...+.
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~----------------~~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfd--- 398 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTS----------------KDSPIIDALIEAAENGKEVTVVV-ELKARFD--- 398 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEec----------------CCcHHHHHHHHHHHcCCEEEEEE-Eehhhcc---
Confidence 457889999999998 8999999542 13699999999999999999998 6332111
Q ss_pred CCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecccc
Q 008859 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (551)
Q Consensus 317 ~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~ 396 (551)
...+.+..+.|+.+|++|+. +- ..+..|+|+++||.+..+. -+-.+++|.-|...
T Consensus 399 -------e~~ni~wa~~le~aG~~viy----g~------------~~~k~H~K~~li~r~~~~~-~~~y~~igTgN~n~- 453 (672)
T TIGR03705 399 -------EEANIRWARRLEEAGVHVVY----GV------------VGLKTHAKLALVVRREGGE-LRRYVHLGTGNYHP- 453 (672)
T ss_pred -------chhhHHHHHHHHHcCCEEEE----cC------------CCeeeeeEEEEEEEeeCCc-eEEEEEecCCCCCC-
Confidence 11244566788899999884 11 1236699999999763221 22255666555443
Q ss_pred ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEE-EeCHHHHHHHHHHHHHHHhh
Q 008859 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKA 459 (551)
Q Consensus 397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~-i~GPaa~dv~~~F~~rW~~~ 459 (551)
.....|.|+++. .++..+.|+...|..-|...
T Consensus 454 -------------------------------~ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~ 486 (672)
T TIGR03705 454 -------------------------------KTARLYTDLSLFTADPEIGRDVARVFNYLTGYS 486 (672)
T ss_pred -------------------------------cccccccceeEEEeChHHHHHHHHHHHHhhCCC
Confidence 112579999999 88999999999999988743
No 137
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.26 E-value=6e-06 Score=89.45 Aligned_cols=137 Identities=20% Similarity=0.298 Sum_probs=93.9
Q ss_pred HHHHHHHHhccceEEEEE-EEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcc
Q 008859 245 EDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM 323 (551)
Q Consensus 245 ~~l~~aI~~A~~~I~I~~-w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~ 323 (551)
..+..+|.+|+++|+|+. | ++ + +..+.+.|+.++++||+|+|++ ++.+..... ..
T Consensus 273 ~~~~~~i~~A~~~i~i~~pY-------f~--~--------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~------~~ 328 (438)
T COG1502 273 RLLLKAINSARESILIATPY-------FV--P--------DRELLAALKAAARRGVDVRIII-PSLGANDSA------IV 328 (438)
T ss_pred HHHHHHHHhhceEEEEEcCC-------cC--C--------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCChH------HH
Confidence 679999999999999999 5 34 2 2678899999999999999998 633211100 00
Q ss_pred cCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcc
Q 008859 324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 403 (551)
Q Consensus 324 ~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H 403 (551)
..-.....+.+...|+++...+. + ...|.|++|||++ ++++|+.|+...-+.-
T Consensus 329 ~~~~~~~~~~l~~~gv~i~~~~~----g------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l--- 381 (438)
T COG1502 329 HAAYRAYLKELLEAGVKVYEYPG----G------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL--- 381 (438)
T ss_pred HHHHHHHHHHHHHhCCEEEEecC----C------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH---
Confidence 00011233445578888753221 0 1349999999998 9999999998732211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHhhcC
Q 008859 404 RLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK 461 (551)
Q Consensus 404 ~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~~~~ 461 (551)
++ .+.+.|+.| .+.++...|+..|..+..
T Consensus 382 ------------N~-----------------E~~~~i~d~~~~~~~~~~~~~~~~~s~~ 411 (438)
T COG1502 382 ------------NF-----------------EVGLVIEDPELALKLRREFEADLARSKR 411 (438)
T ss_pred ------------hh-----------------hheeEEeCHHHHHHHHHHHHHHHHHHhh
Confidence 11 455666776 889999999977765443
No 138
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.23 E-value=2.2e-06 Score=76.80 Aligned_cols=82 Identities=28% Similarity=0.511 Sum_probs=66.9
Q ss_pred cCCCcEEEEEE---CCeeeEEeeecCCCCCCeEeeEEEEeecC----------------CCCeEEEEEEecCCC------
Q 008859 78 ITSDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVF------ 132 (551)
Q Consensus 78 ~tsDpYvtV~l---~~~~v~rTrvi~ns~nP~WnE~F~i~vah----------------~~~~l~f~Vkd~d~~------ 132 (551)
++-++||++.+ ++....+||++.++-.|.|+.+|.|+|.- ...++.|+||..++-
T Consensus 31 VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~ 110 (143)
T cd08683 31 VGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTI 110 (143)
T ss_pred cccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCcccccee
Confidence 34799999996 44556799999999999999999999872 146789999986533
Q ss_pred -----CCceeEEEEeecccccc-cceeeeEEEc
Q 008859 133 -----GAQIIGTAAIPAHTIAT-GELISRWYDI 159 (551)
Q Consensus 133 -----g~~lIG~v~Ipl~~l~~-g~~i~~w~~L 159 (551)
+|-++|+|+||+.+|+. ...+.+|||+
T Consensus 111 ~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 111 KIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 35689999999999885 4569999986
No 139
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.04 E-value=1.5e-06 Score=95.60 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=77.4
Q ss_pred eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 008859 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (551)
Q Consensus 16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----- 90 (551)
|-+|.|.|+.|+.+-+.|..+- |||||.|.+..
T Consensus 946 ~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~fp 983 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFRFP 983 (1103)
T ss_pred ccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccccc
Confidence 4568899999999877776554 99999999965
Q ss_pred -eeeEEeeecCCCCCCeEeeEEEEeecCC-----CCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (551)
Q Consensus 91 -~~v~rTrvi~ns~nP~WnE~F~i~vah~-----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~ 148 (551)
..+.||.|.+.+.||+++|.|.|.|... ..-|.|+|.|+|... .+|-|.+.+.+..+.
T Consensus 984 ~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 984 AVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 4567999999999999999999998775 334899999999998 799999999888775
No 140
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.00 E-value=1.7e-06 Score=95.19 Aligned_cols=91 Identities=20% Similarity=0.440 Sum_probs=70.7
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCC--------------------------------C-----CC
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDV--------------------------------F-----GA 134 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~--------------------------------~-----g~ 134 (551)
+.-|.|.+.+.||+|+|+|.|.+..-. ..+.+-+||+|- - .+
T Consensus 178 Ikatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD 257 (1103)
T KOG1328|consen 178 IKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD 257 (1103)
T ss_pred hhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Confidence 345778888999999999999988754 357889998760 0 16
Q ss_pred ceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEEEeeeeccCCC
Q 008859 135 QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (551)
Q Consensus 135 ~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~~ 185 (551)
+|+|.+.||+.+|.. ..++.||.|...+.+ .+..|.+++.++....+.+
T Consensus 258 DFLGciNipl~EiP~-~Gld~WFkLepRS~~-S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 258 DFLGCINIPLAEIPP-DGLDQWFKLEPRSDK-SKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred ccccccccchhcCCc-chHHHHhccCccccc-ccccceEEEEEEEeeeccc
Confidence 899999999999974 458899999544444 4678999999988766544
No 141
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=97.88 E-value=0.00012 Score=79.91 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=90.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
..+.+.+.++|.+|+++|+|++. |+. |. ..+.++|++++++||+|+||+ .+.++.+.+ ...+
T Consensus 250 ~~l~~~~~~li~~A~~~i~I~TP------YF~--p~--------~~l~~~L~~a~~rGv~V~Ii~-~~~~andfy-~~~d 311 (451)
T PRK09428 250 NLLNKTIFHLMASAEQKLTICTP------YFN--LP--------AILVRNIIRLLRRGKKVEIIV-GDKTANDFY-IPPD 311 (451)
T ss_pred hHHHHHHHHHHhccCcEEEEEeC------CcC--CC--------HHHHHHHHHHHhcCCcEEEEc-CCcccccCc-CCCc
Confidence 45677888999999999999988 344 32 589999999999999999998 666543311 1111
Q ss_pred -Cc--ccCCcH--HH--H-------hHhcCCC---cEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcc
Q 008859 321 -GV--MATHDE--ET--K-------KFFKHSS---VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRK 383 (551)
Q Consensus 321 -g~--~~t~~~--~~--~-------~~~~~~~---v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~ 383 (551)
.+ ++.... +. + ..+ ..| |++.. ++ .++-|-|.++||++
T Consensus 312 ~~~~~~~~~py~ye~~lr~f~~~~~~li-~~G~l~v~i~~---~~--------------~~~~HaK~i~vD~~------- 366 (451)
T PRK09428 312 EPFKIIGALPYLYEINLRRFAKRLQYYI-DNGQLNVRLWK---DG--------------DNSYHLKGIWVDDR------- 366 (451)
T ss_pred cHHHHhhhhHHHHHHhhhhhHHHhhhhh-hcCcceEEEEe---cC--------------CCcceEEEEEEeCC-------
Confidence 00 011000 00 0 112 233 44331 11 23459999999998
Q ss_pred eEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHh
Q 008859 384 ITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRK 458 (551)
Q Consensus 384 ~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~ 458 (551)
+++|||.||...-|.- |+ -+.+.|..|. ..+...|++-...
T Consensus 367 -~~~iGS~Nld~RS~~l---------------n~-----------------E~~l~i~d~~-~~l~~~~~~E~~~ 407 (451)
T PRK09428 367 -WMLLTGNNLNPRAWRL---------------DL-----------------ENALLIHDPK-QELAEQREKELEL 407 (451)
T ss_pred -EEEEcCCCCChhHhhh---------------cc-----------------cceEEEECCh-HHHHHHHHHHHHH
Confidence 9999999997743431 22 3455666666 7888888887765
No 142
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.86 E-value=4.2e-05 Score=84.67 Aligned_cols=106 Identities=17% Similarity=0.376 Sum_probs=81.1
Q ss_pred CCCcEEEEEECCe---eeEEeeecCCCCCCeEeeEEEEeecCC----------------CCeEEEEEEe-cCCCC-Ccee
Q 008859 79 TSDPYVTVVVPQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKD-DDVFG-AQII 137 (551)
Q Consensus 79 tsDpYvtV~l~~~---~v~rTrvi~ns~nP~WnE~F~i~vah~----------------~~~l~f~Vkd-~d~~g-~~lI 137 (551)
++||||+|...+. ..-+|.+++.+.+|.|+|.|.|.+... ...+.+++|+ .+.+. ++|+
T Consensus 150 ~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~Fl 229 (800)
T KOG2059|consen 150 QCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFL 229 (800)
T ss_pred CCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhc
Confidence 3899999998652 225899999999999999999987765 3457788898 44444 8999
Q ss_pred EEEEeecccccccceeeeEEEccC-CCCCC---CCCCceEEEEeeeeccCC
Q 008859 138 GTAAIPAHTIATGELISRWYDIIA-PSGSP---PKPGASIQLELKFTPCDK 184 (551)
Q Consensus 138 G~v~Ipl~~l~~g~~i~~w~~Ll~-~~gkp---~k~~G~L~lsl~f~p~~~ 184 (551)
|.+.+|+........-+.||-|.. ++|+. ....|.+++.+.|+....
T Consensus 230 Gevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 230 GEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred eeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 999999998885566788999853 23332 234588999999876543
No 143
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.44 E-value=9.6e-05 Score=48.96 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.1
Q ss_pred ccCccceEEEccCCCCCCcceEEEEceeeccc
Q 008859 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (551)
Q Consensus 364 ~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~ 395 (551)
.++|+|++|||++ .+|+||.||+.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 4679999999998 99999999986
No 144
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.38 E-value=0.00017 Score=83.54 Aligned_cols=105 Identities=21% Similarity=0.430 Sum_probs=83.6
Q ss_pred EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 008859 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (551)
Q Consensus 13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~-- 90 (551)
.|-.|+|.|-|.-|++|+-..- |.. .||||+.+|..
T Consensus 1520 sY~~~~LtImV~H~K~L~~Lqd-----------------------------g~~-------------P~pyVK~YLlPdp 1557 (1639)
T KOG0905|consen 1520 SYNNGTLTIMVMHAKGLALLQD-----------------------------GQD-------------PDPYVKTYLLPDP 1557 (1639)
T ss_pred EEcCceEEEEhhhhcccccccC-----------------------------CCC-------------CCcceeEEecCCc
Confidence 4567999999999999952111 111 79999999943
Q ss_pred --eeeEEeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859 91 --ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 91 --~~v~rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
....+|+|+.++.||.+||..... .... ...|.++|+..+.+. ..++|.+.||+.++.-.++..+||+|
T Consensus 1558 ~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1558 RKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred hHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 445699999999999999998776 2222 467999999998887 79999999999998866666799998
No 145
>PLN02964 phosphatidylserine decarboxylase
Probab=97.34 E-value=0.00015 Score=81.71 Aligned_cols=86 Identities=21% Similarity=0.363 Sum_probs=70.5
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCe-EEEEEEecCCCC-CceeEEEEeecccccccce--eee
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISR 155 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~-l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~--i~~ 155 (551)
.|+|..+..-+.++.||.+.+++.||+|||...|.|.....+ ..|.|+|.+.+. ++++|.+.+++..+...+. +..
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 588888877777889999999999999999999988776444 599999999998 8999999999988876543 333
Q ss_pred EEEccCCCCC
Q 008859 156 WYDIIAPSGS 165 (551)
Q Consensus 156 w~~Ll~~~gk 165 (551)
-|.++++++.
T Consensus 148 aF~lfD~dgd 157 (644)
T PLN02964 148 SFDLLDPSSS 157 (644)
T ss_pred HHHHHCCCCC
Confidence 4777777654
No 146
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.00055 Score=70.25 Aligned_cols=101 Identities=24% Similarity=0.346 Sum_probs=77.9
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (551)
Q Consensus 17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~ 92 (551)
.-|.|+|+++..|..||..+. +||||.+.+.. .-
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~~f 270 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGKKF 270 (362)
T ss_pred CceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcchhh
Confidence 458899999999988886553 99999998853 33
Q ss_pred eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccC
Q 008859 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (551)
Q Consensus 93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~ 161 (551)
..+|.+.+++.+|.+|++|.+.+.+. ...+.++|||.+.-+ .+.+|-...-. ...++....|+.-+-
T Consensus 271 kkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~~~ 341 (362)
T KOG1013|consen 271 KKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRCLF 341 (362)
T ss_pred cccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccccc
Confidence 46899999999999999999998876 356899999999874 78888755432 334556666776543
No 147
>PF13918 PLDc_3: PLD-like domain
Probab=97.10 E-value=0.0024 Score=60.93 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=52.3
Q ss_pred CCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhh-hcCCeEEEEE
Q 008859 227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV 305 (551)
Q Consensus 227 ~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka-~~GV~V~iLv 305 (551)
.|+.....|++. -.++|...|++|+++|||+--...|-+. ...+.+- ...|.++|.++| +|||+||+||
T Consensus 71 SPp~~~~~gRT~----DldAIl~~I~~A~~fI~IsVMdY~P~~~-~~~~~~Y-----WP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 71 SPPPFCPKGRTL----DLDAILSVIDSAKKFIYISVMDYLPTSR-YSKPNRY-----WPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CCcccCCCCCCc----HHHHHHHHHHhHhheEEEEEeecCCeee-cCCCCCc-----chhHHHHHHHHHHHcCCeEEEEE
Confidence 466666667654 4789999999999999999887777553 2223322 348899998886 8999999998
No 148
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.02 E-value=0.0035 Score=63.96 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=88.2
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
..+=|-+-..|.+|++.|-|..=.| .|. .-|.|||..+-+|||-||||+ |..+... ++.+-
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~F-------TD~---------dIf~DLleAa~kR~VpVYiLL-D~~~~~~--Fl~Mc 193 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVF-------TDV---------DIFCDLLEAANKRGVPVYILL-DEQNLPH--FLEMC 193 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeecc-------ccH---------HHHHHHHHHHHhcCCcEEEEe-chhcChH--HHHHH
Confidence 3567888999999999999987533 222 467787777779999999998 8764321 11110
Q ss_pred CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (551)
Q Consensus 321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt 400 (551)
.-++.+ ...+++-.|+++- +..+.-..-.+.-..-++|+++||++ .+..|..=++.. +.
T Consensus 194 ~~~~v~----~~~~~nmrVRsv~-------G~~y~~rsg~k~~G~~~eKF~lvD~~--------~V~~GSYSFtWs--~~ 252 (284)
T PF07894_consen 194 EKLGVN----LQHLKNMRVRSVT-------GCTYYSRSGKKFKGQLKEKFMLVDGD--------KVISGSYSFTWS--SS 252 (284)
T ss_pred HHCCCC----hhhcCCeEEEEec-------CCeeecCCCCeeeCcccceeEEEecc--------cccccccceeec--cc
Confidence 111111 1123333333331 00111111112344669999999998 888888766651 11
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHH
Q 008859 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRW 456 (551)
Q Consensus 401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW 456 (551)
.-| +-+-..+.|.+|......|..-.
T Consensus 253 ~~~------------------------------r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 253 RVH------------------------------RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred ccc------------------------------cceeEEEeccccchHhHHHHHHH
Confidence 111 24677899999999888887644
No 149
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0022 Score=70.50 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=66.9
Q ss_pred CCcEEEEEECC------eeeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859 80 SDPYVTVVVPQ------ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (551)
Q Consensus 80 sDpYvtV~l~~------~~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~ 148 (551)
-.|||.|.+-+ .+..-|+...|+-.|.+||+|+|.+... .-+|.|.|||.-.-. +.++|.+.+++.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 35999998843 5667888888999999999999998765 345889999876555 789999999999999
Q ss_pred ccceeeeEEEc
Q 008859 149 TGELISRWYDI 159 (551)
Q Consensus 149 ~g~~i~~w~~L 159 (551)
....-..|+||
T Consensus 1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred hcCceeEeeec
Confidence 87778889999
No 150
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.91 E-value=0.00079 Score=70.80 Aligned_cols=97 Identities=16% Similarity=0.339 Sum_probs=78.2
Q ss_pred CCcEEEEEEC----CeeeEEeeecCCCCCCeEeeEEEEeecCC------------CCeEEEEEEecCCCC--CceeEEEE
Q 008859 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA 141 (551)
Q Consensus 80 sDpYvtV~l~----~~~v~rTrvi~ns~nP~WnE~F~i~vah~------------~~~l~f~Vkd~d~~g--~~lIG~v~ 141 (551)
.|-||.+... .....+|.|++++.+|.++|.|.+.+... ...+.|+|+....|- +.|+|++.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 5677777652 23446999999999999999999988762 345899999998874 89999999
Q ss_pred eecccccccceeeeEEEccCCCCCCCCCCceEEEEeee
Q 008859 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179 (551)
Q Consensus 142 Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f 179 (551)
|.++.|.+.-+++..++|.+ |+.. .+|+|.+.++.
T Consensus 468 ikle~Len~cei~e~~~l~D--GRK~-vGGkLevKvRi 502 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKD--GRKA-VGGKLEVKVRI 502 (523)
T ss_pred eeehhhhcccchhhceeccc--cccc-cCCeeEEEEEE
Confidence 99999998888999999954 3332 57888888875
No 151
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.91 E-value=0.00053 Score=78.70 Aligned_cols=87 Identities=23% Similarity=0.408 Sum_probs=73.6
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee-eEEe
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART 96 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~-v~rT 96 (551)
..+|+|++|-+|...|..+. +||||.|.+++.+ .-|+
T Consensus 614 LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d~~ 651 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLDRA 651 (1105)
T ss_pred eEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhhhh
Confidence 36789999999987776554 8999999998854 3477
Q ss_pred eecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeeccc
Q 008859 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHT 146 (551)
Q Consensus 97 rvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~ 146 (551)
.-+.++.||++.+.|.+.+.-+ ...+++.|+|.|.++ ++.||...|.++.
T Consensus 652 ~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 652 HYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred hcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 7889999999999999998877 456899999999998 9999999998864
No 152
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.0022 Score=67.01 Aligned_cols=86 Identities=19% Similarity=0.383 Sum_probs=69.4
Q ss_pred CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEec-CCCC-CceeEEEEeecccccccc-e
Q 008859 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-DVFG-AQIIGTAAIPAHTIATGE-L 152 (551)
Q Consensus 80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~-d~~g-~~lIG~v~Ipl~~l~~g~-~ 152 (551)
++|||+|++.. ....+|+.-.++..|.+.++..|.-..+...|.++||-+ ..+. +.|+|.+.|-++++.-+. .
T Consensus 291 ~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~ 370 (405)
T KOG2060|consen 291 PAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSP 370 (405)
T ss_pred cCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhcccccc
Confidence 79999999854 223588888889999888888888888888899999964 3444 689999999999998666 7
Q ss_pred eeeEEEccCCCCC
Q 008859 153 ISRWYDIIAPSGS 165 (551)
Q Consensus 153 i~~w~~Ll~~~gk 165 (551)
+.+||++......
T Consensus 371 ~igwyKlfgsssl 383 (405)
T KOG2060|consen 371 VIGWYKLFGSSSL 383 (405)
T ss_pred ceeeeeccCCccC
Confidence 8899999766544
No 153
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.59 E-value=0.00054 Score=78.60 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=76.6
Q ss_pred EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (551)
Q Consensus 15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~ 94 (551)
.|-.|++.|++|+.|+.+|+-+. +|||+.|..-++. .
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~------------------------------------------sdp~a~v~f~~qs-~ 240 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDE------------------------------------------SDPDAAVEFCGQS-K 240 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccC------------------------------------------CCchhhhhccccc-c
Confidence 35567788888888887776554 8999999987766 3
Q ss_pred EeeecCCCCCCeEeeEEEEe---e---cC----CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859 95 RTRVLKNSQEPVWNEHFNIP---L---AH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (551)
Q Consensus 95 rTrvi~ns~nP~WnE~F~i~---v---ah----~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll 160 (551)
.|-++.++.||.|++...|. + +| .-..+.|+|+|.+..| ++++|+......-+.. ...-.|+++.
T Consensus 241 ~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~ 316 (1105)
T KOG1326|consen 241 ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTM 316 (1105)
T ss_pred eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEee
Confidence 89999999999999998884 1 11 1345789999999999 8999998774433332 2345688873
No 154
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=96.51 E-value=0.0059 Score=69.72 Aligned_cols=143 Identities=20% Similarity=0.184 Sum_probs=89.1
Q ss_pred cCCCCCCCCcchHHHHHHHHHhccc----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeC
Q 008859 232 LDGGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (551)
Q Consensus 232 l~~G~~y~~~~~~~~l~~aI~~A~~----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD 307 (551)
|..|+........+-+..+|..||+ +|+|....+ . +..+.+.|..++++||+|+|+| .
T Consensus 494 l~~~P~~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l------~-----------D~~ii~aL~~As~aGV~V~Liv-R 555 (672)
T TIGR03705 494 LLVSPFTLRKRLLELIDREIENARAGKPARIIAKMNSL------V-----------DPDLIDALYEASQAGVKIDLIV-R 555 (672)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC------C-----------CHHHHHHHHHHHHCCCeEEEEE-e
Confidence 4455544445566666778899998 999988743 1 3699999999999999999998 5
Q ss_pred CCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEE
Q 008859 308 DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (551)
Q Consensus 308 ~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vaf 387 (551)
+.-... .|+.+. ..++.+. ++ .+-+.. |-|+....+. +.-.+|
T Consensus 556 GiCcL~------pgipg~----------sd~i~v~----------si-----v~r~Le-h~rIy~f~~~-----~d~~~~ 598 (672)
T TIGR03705 556 GICCLR------PGVPGL----------SENIRVR----------SI-----VGRFLE-HSRIYYFGNG-----GEEKVY 598 (672)
T ss_pred cccccC------CCCCCC----------CCCEEEE----------EE-----hhHhhC-cCEEEEEeCC-----CCcEEE
Confidence 443221 111110 1122221 11 122334 7888887543 123899
Q ss_pred EceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHH-H-HHHHHHHhhcC
Q 008859 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVL-I-NFEQRWRKATK 461 (551)
Q Consensus 388 vGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~-~-~F~~rW~~~~~ 461 (551)
+|+.|+...-++ -=..+.+-|..|....-. . .+.-.|+...+
T Consensus 599 igSAn~m~Rnl~--------------------------------~r~E~~~~i~d~~~~~~l~~~il~~~l~Dn~k 642 (672)
T TIGR03705 599 ISSADWMTRNLD--------------------------------RRVEVLFPIEDPTLKQRVLDEILEAYLADNVK 642 (672)
T ss_pred EECCCCCCCccc--------------------------------ceEEEEEEEcCHHHHHHHHHHHHHHhCccccc
Confidence 999998752121 114788888888665554 5 67777766544
No 155
>PRK05443 polyphosphate kinase; Provisional
Probab=96.48 E-value=0.019 Score=66.03 Aligned_cols=134 Identities=19% Similarity=0.171 Sum_probs=85.0
Q ss_pred cchHHHHHHHHHhccc----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccC
Q 008859 241 GTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~ 316 (551)
....+.+..+|.+||+ +|+|....+ + +..+.+.|..+|++||+|+|+| .+.-+..
T Consensus 512 ~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l---------~--------d~~ii~aL~~As~~GV~V~liV-RGiC~l~--- 570 (691)
T PRK05443 512 ERLLELIDREIANARAGKPARIIAKMNSL---------V--------DPQIIDALYEASQAGVKIDLIV-RGICCLR--- 570 (691)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCCC---------C--------CHHHHHHHHHHHHCCCeEEEEE-ecccccC---
Confidence 4566667778888998 999988743 1 3699999999999999999998 5443321
Q ss_pred CCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecccc
Q 008859 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (551)
Q Consensus 317 ~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~ 396 (551)
.|+.+. ..++.| .+++. -+.. |-|+....+. +...+|+|+.|+...
T Consensus 571 ---pgipg~----------sd~i~v----------~s~v~-----r~Le-h~rIy~f~~g-----d~~~~~iGSAn~d~R 616 (691)
T PRK05443 571 ---PGVPGL----------SENIRV----------RSIVG-----RFLE-HSRIYYFGNG-----GDEEVYISSADWMPR 616 (691)
T ss_pred ---CCCCCC----------CCCEEE----------HHHHH-----HHHh-cCEEEEEeCC-----CCcEEEEECCCCCcc
Confidence 111110 011111 01111 1222 4677777532 112999999999762
Q ss_pred ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHH-HHHHHHHHHHHHHhhcC
Q 008859 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWRKATK 461 (551)
Q Consensus 397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPa-a~dv~~~F~~rW~~~~~ 461 (551)
-++ -=..+.+-|..|. +..+...|...|....+
T Consensus 617 sl~--------------------------------~r~Ev~~~i~d~~~~~~l~~~~~~~l~dn~k 650 (691)
T PRK05443 617 NLD--------------------------------RRVEVLFPILDPRLKQRLLEILEIQLADNVK 650 (691)
T ss_pred ccc--------------------------------ceEEEeEEEeCHHHHHHHHHHHHHHHhhhhh
Confidence 221 1157888888885 56666789999987655
No 156
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=96.44 E-value=0.12 Score=55.26 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=88.8
Q ss_pred chHHHHHHHHHhccceEEEEEEEEeeeeeeeecCC-CCCC-CCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCC
Q 008859 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQT-RPLP-RGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKT 319 (551)
Q Consensus 242 ~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~-~~~p-~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~ 319 (551)
...++-++.|++|+++++|+.|-.+ |.-.+. .++. ..-+..+..+|..++.+||.|||.. ....... .
T Consensus 72 sT~eaW~~Ll~sA~~eldIas~yws----L~~~d~~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~---~-- 141 (456)
T KOG3603|consen 72 STKEAWLELLSTAQEELDIASFYWS----LTGKDTGVVDSSTQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP---P-- 141 (456)
T ss_pred cHHHHHHHHhhccceEEEEEEEeec----cccceeccCCCcchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC---C--
Confidence 3457889999999999999876432 111110 0000 1124678889999999999999997 3332110 0
Q ss_pred CCcccCCcHHHHhHhcCCC-cEEEe--cCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecccc
Q 008859 320 PGVMATHDEETKKFFKHSS-VNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (551)
Q Consensus 320 ~g~~~t~~~~~~~~~~~~~-v~~~l--~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~ 396 (551)
+.+ ...|...| +++.- .++++. -.-.|-|+.|||.+ .=|+||.|+..
T Consensus 142 -------~~d-~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW- 191 (456)
T KOG3603|consen 142 -------NAD-LQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW- 191 (456)
T ss_pred -------ccc-HHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch-
Confidence 112 22344455 55432 122221 12349999999998 88999999987
Q ss_pred ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEe--CHHHHHHHHHHHHHHHhhcC
Q 008859 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD--GPAAYDVLINFEQRWRKATK 461 (551)
Q Consensus 397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~--GPaa~dv~~~F~~rW~~~~~ 461 (551)
|=-|+ + .-+.+.++ =-.|.||...|++.|..-..
T Consensus 192 rSlTq----------v---------------------kElGv~v~NCpclakDL~kiFe~yW~lg~~ 227 (456)
T KOG3603|consen 192 RSLTQ----------V---------------------KELGVVVRNCPCLAKDLKKIFERYWYLGNA 227 (456)
T ss_pred hhccc----------e---------------------eEeeeEEecChhHHHHHHHHHHHHhcCCCC
Confidence 21110 0 11111111 12699999999999986443
No 157
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.44 E-value=0.012 Score=67.12 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=80.9
Q ss_pred EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 008859 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (551)
Q Consensus 14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--- 90 (551)
..-++|.|+|+++.-|..++ ...||.|.+-+
T Consensus 700 vIA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP~ 733 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLPT 733 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCCc
Confidence 47899999999999887544 34699999854
Q ss_pred ---eeeEEeeecCC-CCCCeEee-EEEEe--ecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCC
Q 008859 91 ---ATVARTRVLKN-SQEPVWNE-HFNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (551)
Q Consensus 91 ---~~v~rTrvi~n-s~nP~WnE-~F~i~--vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~ 163 (551)
.+..||+++.+ +.||+|+| .|.|. +-...+.|.|.|++. |..+||.-.+|++.|.+|- +.+-|..+.
T Consensus 734 Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE---ggK~ig~RIlpvd~l~~GY---rhv~LRse~ 807 (1189)
T KOG1265|consen 734 DTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE---GGKFIGQRILPVDGLNAGY---RHVCLRSES 807 (1189)
T ss_pred hhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc---CCceeeeeccchhcccCcc---eeEEecCCC
Confidence 24468888765 99999995 47775 444466799999987 4689999999999999884 334555555
Q ss_pred CCCCCCCceEEEEe
Q 008859 164 GSPPKPGASIQLEL 177 (551)
Q Consensus 164 gkp~k~~G~L~lsl 177 (551)
+.|. ....|.|.+
T Consensus 808 Nqpl-~lp~Lfv~i 820 (1189)
T KOG1265|consen 808 NQPL-TLPALFVYI 820 (1189)
T ss_pred CCcc-ccceeEEEE
Confidence 5554 234444443
No 158
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.38 E-value=0.0039 Score=68.35 Aligned_cols=69 Identities=29% Similarity=0.468 Sum_probs=55.9
Q ss_pred CCcEEEEEEC---C--eeeEEeeecCCCCCCeEeeEEEEeecC-----CCCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859 80 SDPYVTVVVP---Q--ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (551)
Q Consensus 80 sDpYvtV~l~---~--~~v~rTrvi~ns~nP~WnE~F~i~vah-----~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~ 148 (551)
+|||..+.-- + ..+.||.+++|+.+|.|. .|.+++.. ....+++.++|.+..+ .++||.+.-++.++.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 8999987642 1 467899999999999997 56665433 2466889999999998 599999999999886
Q ss_pred c
Q 008859 149 T 149 (551)
Q Consensus 149 ~ 149 (551)
.
T Consensus 236 ~ 236 (529)
T KOG1327|consen 236 E 236 (529)
T ss_pred c
Confidence 4
No 159
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.36 E-value=0.094 Score=47.84 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=69.7
Q ss_pred cEEEEEECCee--eEEeeecCC-CCCCeEeeEEEEeecCC---------CCeEEEEEEecCCCCC-ceeEEEEeeccccc
Q 008859 82 PYVTVVVPQAT--VARTRVLKN-SQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVFGA-QIIGTAAIPAHTIA 148 (551)
Q Consensus 82 pYvtV~l~~~~--v~rTrvi~n-s~nP~WnE~F~i~vah~---------~~~l~f~Vkd~d~~g~-~lIG~v~Ipl~~l~ 148 (551)
.||...-+... .+.|..... ...=.|||.|.+.|.-. ...+.|.|+....-+. ..+|.+.|.|.+.+
T Consensus 26 v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~ 105 (143)
T PF10358_consen 26 VFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYA 105 (143)
T ss_pred EEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhh
Confidence 45555444443 345554433 45579999999975432 3457899988765454 59999999999998
Q ss_pred c--cceeeeEEEccCCCCCCCCCCceEEEEeeeeccCCCCc
Q 008859 149 T--GELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (551)
Q Consensus 149 ~--g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~~~~ 187 (551)
. .+.+..-++|... .+..+.|+|++++.+...++.
T Consensus 106 ~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 106 NEDEEPITVRLLLKKC----KKSNATLSISISLSELREDPD 142 (143)
T ss_pred CcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCCC
Confidence 7 3566777777332 245789999999988766543
No 160
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.0014 Score=67.43 Aligned_cols=124 Identities=23% Similarity=0.289 Sum_probs=88.8
Q ss_pred EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----eee
Q 008859 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----ATV 93 (551)
Q Consensus 18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~v 93 (551)
.|+.+|..|+.|..|+..+. .|||+...+.. ...
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl~s 131 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKLNS 131 (362)
T ss_pred hcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhhhh
Confidence 47899999999999987664 79999988753 223
Q ss_pred EEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccc--eeeeEEEccCCCCC-
Q 008859 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISRWYDIIAPSGS- 165 (551)
Q Consensus 94 ~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~--~i~~w~~Ll~~~gk- 165 (551)
-||.+..|+.||.|+|.-...--.. ...+.+.|.|++.+. .+++|+..+++..+.+-+ ...-||.-.-+.++
T Consensus 132 lr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~ra 211 (362)
T KOG1013|consen 132 LRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERA 211 (362)
T ss_pred hhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccc
Confidence 5888999999999998866552221 334678888999888 899999999999888533 34445543222111
Q ss_pred ---CCCCCceEEEEeeeeccC
Q 008859 166 ---PPKPGASIQLELKFTPCD 183 (551)
Q Consensus 166 ---p~k~~G~L~lsl~f~p~~ 183 (551)
..+..|+|.+++.|-...
T Consensus 212 d~~~~E~rg~i~isl~~~s~~ 232 (362)
T KOG1013|consen 212 DRDEDEERGAILISLAYSSTT 232 (362)
T ss_pred cccchhhccceeeeeccCcCC
Confidence 135678899888875543
No 161
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.66 E-value=0.0089 Score=50.51 Aligned_cols=76 Identities=14% Similarity=0.339 Sum_probs=56.8
Q ss_pred cEEE--EEECCeeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeE
Q 008859 82 PYVT--VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRW 156 (551)
Q Consensus 82 pYvt--V~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w 156 (551)
-|++ +.+.+....+|.+...+.||+++|+|.|.++-. .-.|.|.|.. ..-..+.||.+.+.++++- .++.+.|
T Consensus 23 i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~g-eeE~~HW 100 (103)
T cd08684 23 IYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLS-TQETDHW 100 (103)
T ss_pred eEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCC-HHHhhhh
Confidence 4554 455677778999999999999999999998765 3457788877 2223789999999998775 3456677
Q ss_pred EEc
Q 008859 157 YDI 159 (551)
Q Consensus 157 ~~L 159 (551)
.++
T Consensus 101 ~e~ 103 (103)
T cd08684 101 LEI 103 (103)
T ss_pred hcC
Confidence 653
No 162
>PLN03008 Phospholipase D delta
Probab=95.48 E-value=0.016 Score=66.83 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=42.6
Q ss_pred ecCCCCCCCC-cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecC-CCCCCCCCchhHHHHHHHhhh--cCCeEEEEE
Q 008859 231 PLDGGKLYKP-GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRGGDLTLGELLKYKSE--EGVRVLLLV 305 (551)
Q Consensus 231 ~l~~G~~y~~-~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~-~~~~p~g~~~~l~elL~~ka~--~GV~V~iLv 305 (551)
-|..|+...- ..+..+.++||++|||+|||+.=-|-...+.+... +.....-....|.+.|.+|.+ ++-+|+|++
T Consensus 555 ~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 555 HLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred ccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 3555554443 45788999999999999999864222221111000 000000013456666666655 478898887
No 163
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.48 E-value=0.065 Score=53.53 Aligned_cols=50 Identities=30% Similarity=0.252 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD 307 (551)
+...+.+-+.|++|++.|+|..|. + .-..|.+.|+++++|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~-----------~------~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP-----------E------FLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G-----------G------GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH-----------H------HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 457788999999999999999982 1 1368999999999999999999965
No 164
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.42 E-value=0.29 Score=51.72 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=78.8
Q ss_pred CcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC--------CCeEEEEEEecC-CCC-CceeEEEEeecccc---
Q 008859 81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDD-VFG-AQIIGTAAIPAHTI--- 147 (551)
Q Consensus 81 DpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~--------~~~l~f~Vkd~d-~~g-~~lIG~v~Ipl~~l--- 147 (551)
.-.+...+++... -|-.+..+..|.||......+..- ...|.++++..| .-+ -+.||.+.+++...
T Consensus 19 ~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~ 97 (340)
T PF12416_consen 19 PIVVEAKFNGESL-ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVP 97 (340)
T ss_pred cEEEEEEeCCcee-eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccc
Confidence 4577788888764 677777789999999988887753 456888888887 334 69999999999988
Q ss_pred ccc--ceeeeEEEccCCCCCCCCCCceEEEEeeeeccCC
Q 008859 148 ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (551)
Q Consensus 148 ~~g--~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~ 184 (551)
..+ .....||+|++.+.+-.+...+|.++|.......
T Consensus 98 ~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 98 QEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred cccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 555 4567899999886555456788888887766544
No 165
>PLN02352 phospholipase D epsilon
Probab=95.35 E-value=0.049 Score=62.63 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCC-CCCCCCCchhHHHHHHHhhhc--CCeEEEEE
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQT-RPLPRGGDLTLGELLKYKSEE--GVRVLLLV 305 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~-~~~p~g~~~~l~elL~~ka~~--GV~V~iLv 305 (551)
..+..++.+||++|||+|||+.=-|-...+.+.... ...-.-.+..|.+.|.+|.++ +-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 679999999999999999998643321111221110 000000134677777777665 68888887
No 166
>PLN02270 phospholipase D alpha
Probab=95.25 E-value=0.05 Score=62.76 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecC-CCCCCCC----CchhHHHHHHHhhh--cCCeEEEEE
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRG----GDLTLGELLKYKSE--EGVRVLLLV 305 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~-~~~~p~g----~~~~l~elL~~ka~--~GV~V~iLv 305 (551)
.++...+.+||++|+|+|||+.=-|-....-+... -.+...| ....|...|.+|.+ ++-+|+|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 57889999999999999999764322221111100 0000000 12355555666555 478999987
No 167
>PLN02866 phospholipase D
Probab=95.12 E-value=0.17 Score=59.96 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=47.9
Q ss_pred CcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchh
Q 008859 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (551)
Q Consensus 207 p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~ 286 (551)
+.+..|+|++.-.+- .=..|-....+.+.++.+++|++|+|+|||+.=. ++..-....+ ....
T Consensus 705 ~~~~~c~~QivRS~~---------~WS~G~~~~E~SI~~AYi~~I~~A~hfIYIENQF------Fis~~~~~~~--i~N~ 767 (1068)
T PLN02866 705 GPRVSCRCQVIRSVS---------QWSAGTSQVEESIHAAYCSLIEKAEHFIYIENQF------FISGLSGDDT--IQNR 767 (1068)
T ss_pred CCCCeEEEEEEeecc---------cccCCCCchHHHHHHHHHHHHHhcccEEEEeccc------cccccccccc--ccch
Confidence 345567777776542 1133432223679999999999999999998742 2211000000 1234
Q ss_pred HHHHHH----HhhhcC--CeEEEEE
Q 008859 287 LGELLK----YKSEEG--VRVLLLV 305 (551)
Q Consensus 287 l~elL~----~ka~~G--V~V~iLv 305 (551)
++++|. +|+++| .+|+|++
T Consensus 768 I~~AL~~RI~rA~~~~~~frviIVi 792 (1068)
T PLN02866 768 VLEALYRRILRAHKEKKCFRVIIVI 792 (1068)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 555554 776665 6677776
No 168
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.36 E-value=0.27 Score=46.40 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=43.8
Q ss_pred CCcEEEEEE--CCeeeE---EeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCC-C----CceeEEEEeecc
Q 008859 80 SDPYVTVVV--PQATVA---RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVF-G----AQIIGTAAIPAH 145 (551)
Q Consensus 80 sDpYvtV~l--~~~~v~---rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~-g----~~lIG~v~Ipl~ 145 (551)
+|.||++.+ ++..+. .|.-+. ..++.|||...|++.-. .+.|.|+|++...- + ...||.+.+++-
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 678999876 343321 343333 36899999988876543 46799999986431 1 256888888775
Q ss_pred c
Q 008859 146 T 146 (551)
Q Consensus 146 ~ 146 (551)
+
T Consensus 105 d 105 (158)
T cd08398 105 D 105 (158)
T ss_pred C
Confidence 5
No 169
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=94.34 E-value=0.28 Score=47.20 Aligned_cols=144 Identities=20% Similarity=0.286 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~ 320 (551)
+.....|.++|+.|.+...+.+++.. . +-.-|.+.|..+...||+++||- ++.-+..
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~--------------s-G~sll~~~L~d~~~Kgvkgkilt-s~YlnfT------- 94 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITE--------------S-GLSLLFDLLLDLVNKGVKGKILT-SDYLNFT------- 94 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeC--------------c-cHHHHHHHHHHHhcCCceEEEec-ccccCcc-------
Confidence 56889999999999999999987431 1 24677899999999999999996 5543322
Q ss_pred CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (551)
Q Consensus 321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt 400 (551)
+....++.+.-.+|+|++.- .+ ...+|-|-.|.-.. ....|++|+.||+++=.-.
T Consensus 95 -----dP~al~~Ll~~~nve~r~~~-~~--------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 95 -----DPVALRKLLMLKNVELRVST-IG--------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred -----CHHHHHHHHhhhccceEEEe-cC--------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 22233444444557776521 11 13458887775443 3358999999999843211
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCee-EeeEEEeCHHHHHHHHHHHHHHH-hhcC
Q 008859 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWR-KATK 461 (551)
Q Consensus 401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWh-D~h~~i~GPaa~dv~~~F~~rW~-~~~~ 461 (551)
...|- -+...-.|-.|..+...|+..|. +.+.
T Consensus 150 -----------------------------n~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~~~t~ 183 (198)
T COG3886 150 -----------------------------NEEWNLKVSSSKNGDIVKEVKVTFERQFQNKITP 183 (198)
T ss_pred -----------------------------CHHHHhhhccccccchHHHHHHHHHHHHHhhccc
Confidence 01121 11122357789999999999998 4443
No 170
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.33 E-value=0.28 Score=41.83 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=63.9
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEc
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~L 159 (551)
++..+.+.+++..++.|.-. ...+.-|+++|.|.+.... +|++.|+-.|- ..+-|..++.+++...+ .-.++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRsR-ELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERSR-ELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEeeccc-EEEEEEEEecc--hhhhhheeeEhhhhccc----ceecc
Confidence 67889999999999999764 3467899999999997654 89999987765 56778888888884322 12233
Q ss_pred cCCCCCCCCCCceEEEEeee
Q 008859 160 IAPSGSPPKPGASIQLELKF 179 (551)
Q Consensus 160 l~~~gkp~k~~G~L~lsl~f 179 (551)
.+.|.|...+.|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 456888888887
No 171
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.10 E-value=0.17 Score=58.56 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=35.9
Q ss_pred CCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhc--CCeEEEEE
Q 008859 237 LYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLV 305 (551)
Q Consensus 237 ~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~--GV~V~iLv 305 (551)
.......-.+...+|++|+|+|||+.=-|=....=+ ...... .+..|.+-+.+|-++ --+|+|++
T Consensus 561 ~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~--~~~~n~--v~~ela~rIv~a~ra~e~frVYIVI 627 (887)
T KOG1329|consen 561 NEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNW--DSVLNK--VGDELALRIVKAIRAGEKFRVYIVI 627 (887)
T ss_pred CchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCC--Ccccch--HHHHHHHHHHHHHhcCCceEEEEEE
Confidence 333355778899999999999999863221110001 110000 123444444454444 57888887
No 172
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.42 E-value=0.62 Score=43.73 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=73.8
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCC--------------CeEEEEEEecCCCC-CceeEEEEeec
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPA 144 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~--------------~~l~f~Vkd~d~~g-~~lIG~v~Ipl 144 (551)
+-.++.+.+.+++ .||+.+.-+.+|.++|.|.|++.... ..|++.|-.-|..+ ..++|.-.+..
T Consensus 34 s~~~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldW 112 (156)
T PF15627_consen 34 STFTLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDW 112 (156)
T ss_pred eEEEEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehH
Confidence 4456666667877 79999999999999999999987752 45777777777777 68999999999
Q ss_pred cccccccee--eeEEEccCCCCCCCCCCceEEEEeeeeccC
Q 008859 145 HTIATGELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (551)
Q Consensus 145 ~~l~~g~~i--~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~ 183 (551)
..++..... .--..|.+......-..|.|.+++...|..
T Consensus 113 R~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 113 RKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 888754333 333444443333112468899999888764
No 173
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.59 E-value=0.28 Score=50.53 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=60.9
Q ss_pred CCCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEE
Q 008859 79 TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (551)
Q Consensus 79 tsDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~ 157 (551)
|-+.||.+..+.+..+||+|-.....-.|.|+|++.+-. ...+.+-|+.+++-- ..+.-...|.+..+.. ..-++-+
T Consensus 73 t~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~r-qspd~~~ 150 (442)
T KOG1452|consen 73 TVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKLCHLGLLEAFVVDR-QSPDRVV 150 (442)
T ss_pred eeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhccccccchhhhhhhhh-cCCccee
Confidence 368999999998877899998777777999999998753 335667777766543 4443222343433332 1222223
Q ss_pred EccCCCCCCCCCCceEEEEeeeecc
Q 008859 158 DIIAPSGSPPKPGASIQLELKFTPC 182 (551)
Q Consensus 158 ~Ll~~~gkp~k~~G~L~lsl~f~p~ 182 (551)
-+ ..++.|++.+.|.+..-
T Consensus 151 Al------~lePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 151 AL------YLEPRGQPPLRLPLADP 169 (442)
T ss_pred ee------ecccCCCCceecccCCh
Confidence 32 12456888888877553
No 174
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.57 E-value=0.4 Score=45.23 Aligned_cols=69 Identities=25% Similarity=0.313 Sum_probs=51.0
Q ss_pred CCCcEEEEEE--CCeee---EEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccc
Q 008859 79 TSDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (551)
Q Consensus 79 tsDpYvtV~l--~~~~v---~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l 147 (551)
.++.||++.| ++..+ -+|..+.-+..+.|||...|++.-. .+.|.|+||+.+..+ ...||.+.+++-+-
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3899999977 33322 2565555577789999999986654 467999999977655 67899998887653
No 175
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=92.54 E-value=0.77 Score=43.87 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=43.2
Q ss_pred CCcEEEEEE--CCeee---EEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-----------------
Q 008859 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG----------------- 133 (551)
Q Consensus 80 sDpYvtV~l--~~~~v---~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g----------------- 133 (551)
.+.||++.| ++..+ ..|....-+.++.|||.+.|++.-. .+.|.|+|++.....
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~ 106 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKD 106 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCc
Confidence 567888765 44332 2454444457799999998876543 467999999854321
Q ss_pred CceeEEEEeeccc
Q 008859 134 AQIIGTAAIPAHT 146 (551)
Q Consensus 134 ~~lIG~v~Ipl~~ 146 (551)
...||.+.+++-+
T Consensus 107 ~~~ig~~n~~LFd 119 (173)
T cd08693 107 DNPIAWVNTMVFD 119 (173)
T ss_pred ceEEEEEeEEEEc
Confidence 3567777666644
No 176
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.46 E-value=1 Score=42.00 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=47.2
Q ss_pred CCcEEEEEE--CCe---eeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC---CceeEEEEeecccc
Q 008859 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTI 147 (551)
Q Consensus 80 sDpYvtV~l--~~~---~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g---~~lIG~v~Ipl~~l 147 (551)
.+.||++.| ++. .+..|+....+.++.|||...|++.-. .+.|.|+|++.+..+ ...||.+.+++-+.
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 567888866 332 222444443347899999998875443 567999999876543 48899999988664
No 177
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=90.52 E-value=1.4 Score=41.82 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=58.4
Q ss_pred CCcEEEEEECCeeeEEeeecCC--CCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccc
Q 008859 80 SDPYVTVVVPQATVARTRVLKN--SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~n--s~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~ 148 (551)
...|++|.+.+..|.+|+...- ...=.++|.|.+.+..--..|.++|+.....++.+|+.+.||+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 5789999999999999987544 33457889999999888889999999998877999999999986543
No 178
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.33 E-value=1.4 Score=40.41 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=48.7
Q ss_pred CcEEEEEE--CCe----eeEEeeecCCC-CCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-C----ceeEEEEeec
Q 008859 81 DPYVTVVV--PQA----TVARTRVLKNS-QEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-A----QIIGTAAIPA 144 (551)
Q Consensus 81 DpYvtV~l--~~~----~v~rTrvi~ns-~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~----~lIG~v~Ipl 144 (551)
+.||++.| ++. .+.+|....-+ .++.|||...|++.-. .+.|.|+|+..+... . ..||.+.+++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 45777776 443 33366665555 7999999988875432 567999999876655 3 6999999998
Q ss_pred ccccccceeee
Q 008859 145 HTIATGELISR 155 (551)
Q Consensus 145 ~~l~~g~~i~~ 155 (551)
-+. .|....|
T Consensus 83 Fd~-~~~L~~G 92 (142)
T PF00792_consen 83 FDY-RGQLRQG 92 (142)
T ss_dssp B-T-TSBBEEE
T ss_pred ECC-CCcccCC
Confidence 765 3443333
No 179
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.28 E-value=0.32 Score=54.94 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=67.7
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccc-cceeeeEE
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWY 157 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~-g~~i~~w~ 157 (551)
.+||+.|.+.....+.+.+.+.+..|.|+|+|++. .+....+.+.|+.+.... +...-.+.+-.+++.. ....+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~-v~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVE-VVAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeee-eecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 68999999988777777777779999999999999 445557888888876555 4444445555555442 22355688
Q ss_pred EccCCCCCCCCCCceEEEEeeeeccCC
Q 008859 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (551)
Q Consensus 158 ~Ll~~~gkp~k~~G~L~lsl~f~p~~~ 184 (551)
.+ +..|.+.+.+.++-...
T Consensus 107 ~~--------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI--------EELGTLLKPAALTGTLE 125 (694)
T ss_pred cc--------ccccceeeeecccCcCC
Confidence 75 33477777777666544
No 180
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.02 E-value=3.2 Score=39.48 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=44.2
Q ss_pred CCcEEEEEE--CCeeeE---EeeecC--C--CCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC----------Cce
Q 008859 80 SDPYVTVVV--PQATVA---RTRVLK--N--SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG----------AQI 136 (551)
Q Consensus 80 sDpYvtV~l--~~~~v~---rTrvi~--n--s~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g----------~~l 136 (551)
++.||++.| ++..+. .|+... + ...+.|||...|++.-. .+.|.|++++....+ ...
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 678999876 443322 343221 1 34678999998876432 567999999865432 468
Q ss_pred eEEEEeecccc
Q 008859 137 IGTAAIPAHTI 147 (551)
Q Consensus 137 IG~v~Ipl~~l 147 (551)
||.+.+++-+.
T Consensus 109 lG~~~~~LFd~ 119 (171)
T cd04012 109 LGWVSLPLFDF 119 (171)
T ss_pred EEEEeEeeEcc
Confidence 88888887553
No 181
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=88.07 E-value=2.1 Score=41.05 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=33.3
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC----CceeEEEEeeccc
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG----AQIIGTAAIPAHT 146 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g----~~lIG~v~Ipl~~ 146 (551)
+.+.|.|.-.+.+|.|+|+|.|.+... ...|.|++++...-. ...+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 456788888889999999999998876 456899998865432 2688888887765
No 182
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=85.10 E-value=6 Score=34.83 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=52.1
Q ss_pred EEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC--------CCeEEEEEEecCCCCCceeEEEEeecccccc--cce
Q 008859 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT--GEL 152 (551)
Q Consensus 83 YvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~--------~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~--g~~ 152 (551)
||+++.-.-...-|.++. +.+|.+|-+-.+.|... ...+.+++...-......||.+.|++.++.. ++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 567776554445677765 78999998877777765 3567888877653336899999999999984 446
Q ss_pred eeeEEEccCCCCCCCCCCceEEEEeee
Q 008859 153 ISRWYDIIAPSGSPPKPGASIQLELKF 179 (551)
Q Consensus 153 i~~w~~Ll~~~gkp~k~~G~L~lsl~f 179 (551)
+.+-..+.+.+|+ .-|.|...++.
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEe
Confidence 8888888777777 45888777764
No 183
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=81.73 E-value=2.9 Score=40.54 Aligned_cols=53 Identities=23% Similarity=0.435 Sum_probs=38.6
Q ss_pred eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC---CceeEEEEeec
Q 008859 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPA 144 (551)
Q Consensus 92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g---~~lIG~v~Ipl 144 (551)
...+|-|+.-+.+|.|+|++.|.++.. ...|.|+++....-. ...+|-+.+||
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 346888888899999999999998765 567889777643221 24566666665
No 184
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=81.70 E-value=11 Score=36.15 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=52.4
Q ss_pred cEEEEEE--CCee--eEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC--CceeEEEEeecccccccc
Q 008859 82 PYVTVVV--PQAT--VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGE 151 (551)
Q Consensus 82 pYvtV~l--~~~~--v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g--~~lIG~v~Ipl~~l~~g~ 151 (551)
.||++.| ++.. .-+|.....+.++.|||...|++.-. .+.|.|+||+...-. ...+|.- +.+.-....
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~ 109 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKH 109 (178)
T ss_pred EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccc--ccccccccc
Confidence 5677654 3321 12666666678899999988876543 467999999863221 1222221 111111122
Q ss_pred eeeeEEE--ccCCCCCCCCCCceEEEEeeeecc
Q 008859 152 LISRWYD--IIAPSGSPPKPGASIQLELKFTPC 182 (551)
Q Consensus 152 ~i~~w~~--Ll~~~gkp~k~~G~L~lsl~f~p~ 182 (551)
..-+|.. |.+..+.- ..|...|.+.-.|.
T Consensus 110 ~~l~wvn~~LFD~~~~L--r~G~~~L~~W~~~~ 140 (178)
T cd08399 110 QLLYYVNLLLIDHRFLL--RTGEYVLHMWQISG 140 (178)
T ss_pred ceEEEEEEEEEcCCCce--ecCCEEEEEecCCC
Confidence 3345544 34544432 35777777766553
No 185
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=80.36 E-value=11 Score=42.68 Aligned_cols=97 Identities=24% Similarity=0.313 Sum_probs=62.8
Q ss_pred chHHHHHHHHHhccc-----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccC
Q 008859 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (551)
Q Consensus 242 ~~~~~l~~aI~~A~~-----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~ 316 (551)
+.|+.+.+-|++|-. .|-++-| |- +++..+.++|..+|+.|-+|-+|| --..
T Consensus 352 eSF~~Vv~fl~qAA~DP~VLAIKqTLY---------Rt-------~~dSpIV~ALi~AA~nGKqVtvlV-ELkA------ 408 (696)
T COG0855 352 ESFEPVVEFLRQAAADPDVLAIKQTLY---------RT-------SKDSPIVRALIDAAENGKQVTVLV-ELKA------ 408 (696)
T ss_pred hhhHHHHHHHHHhhcCCCeEEEEEEEE---------ec-------CCCCHHHHHHHHHHHcCCeEEEEE-EEhh------
Confidence 467888888888743 4444544 32 246799999999999999999998 2111
Q ss_pred CCCCCcccCCcHH----HHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEE
Q 008859 317 VKTPGVMATHDEE----TKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFI 388 (551)
Q Consensus 317 ~~~~g~~~t~~~~----~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafv 388 (551)
.-||| ..+.|+.+||+|++ +--+ +--|.|+++|=-+ .++++.-|+
T Consensus 409 --------RFDEE~NI~WAk~LE~AGvhVvy----G~~g------------lKtHAKm~lVvRr---E~~~lrrY~ 457 (696)
T COG0855 409 --------RFDEEANIHWAKRLERAGVHVVY----GVVG------------LKTHAKMLLVVRR---EGGKLRRYV 457 (696)
T ss_pred --------hcChhhhhHHHHHHHhCCcEEEe----cccc------------eeeeeeEEEEEEe---cCCcEEEEE
Confidence 11333 45667899999984 1111 2339999988554 223455554
No 186
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=79.25 E-value=4.9 Score=39.20 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=40.2
Q ss_pred eeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCC-----CCceeEEEEeec
Q 008859 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF-----GAQIIGTAAIPA 144 (551)
Q Consensus 91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~-----g~~lIG~v~Ipl 144 (551)
...++|-|.--..+|.|+|++.+.++.. ...|.|+++....- ....+|-+.+||
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 3457888888889999999999988764 56799999764321 135677777776
No 187
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=79.12 E-value=3.7 Score=43.36 Aligned_cols=104 Identities=21% Similarity=0.274 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcc-----ceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCC
Q 008859 243 CWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317 (551)
Q Consensus 243 ~~~~l~~aI~~A~-----~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~ 317 (551)
-|+.+.+-|++|- ..|-++-|.+ . ....+.++|.++|+.|-+|-++| --..-++ .
T Consensus 19 sf~~vv~fl~eAA~DP~V~aIk~TLYR~---------a-------~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFD---E 78 (352)
T PF13090_consen 19 SFDPVVDFLREAAEDPDVLAIKITLYRV---------A-------SNSPIVNALIEAAENGKQVTVLV-ELKARFD---E 78 (352)
T ss_dssp -TCHHHHHHHHHCC-TTEEEEEEEESSS-----------------TT-HHHHHHHHHHHTT-EEEEEE-STTSSST---T
T ss_pred ccHHHHHHHHHHhcCCCccEEEEEEEec---------C-------CCCHHHHHHHHHHHcCCEEEEEE-EEecccc---H
Confidence 4777788888873 4788887732 2 35799999999999999999998 3332211 0
Q ss_pred CCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEce
Q 008859 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGG 390 (551)
Q Consensus 318 ~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG 390 (551)
. .+-...+.|+.+||+|+. ..| ++ --|-|+++|=-+..+ .=+-.+++|-
T Consensus 79 e-------~Ni~Wa~~Le~aGv~Viy--G~~--gl------------KvHaK~~lI~R~e~~-~~~~Y~hlgT 127 (352)
T PF13090_consen 79 E-------NNIHWAKRLEEAGVHVIY--GVP--GL------------KVHAKICLIVRREGG-GLRRYAHLGT 127 (352)
T ss_dssp C-------CCCCCCHHHHHCT-EEEE----T--T-------------EE--EEEEEEEEETT-EEEEEEEEES
T ss_pred H-------HHhHHHhhHHhcCeEEEc--CCC--Ch------------hheeeEEEEEEEeCC-cEEEEEEEcC
Confidence 0 111234567889999884 111 12 229999999654222 1223555543
No 188
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=76.29 E-value=7.4 Score=37.16 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=36.7
Q ss_pred EEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC------CceeEEEEeeccc
Q 008859 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG------AQIIGTAAIPAHT 146 (551)
Q Consensus 94 ~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g------~~lIG~v~Ipl~~ 146 (551)
.+|-+..+ .+|.|+|+|.+.++.. ...|.|++++...-. ...+|-+.+|+-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999998654 467999998865322 4677777777654
No 189
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=75.98 E-value=19 Score=31.00 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=33.9
Q ss_pred CCcEEEEEE--CCeee---EEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEec
Q 008859 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (551)
Q Consensus 80 sDpYvtV~l--~~~~v---~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~ 129 (551)
++.||++.| ++..+ -.|..+.-+..+.|||-..|++.-. .+.|.|+|++.
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 478999876 44322 1455444466699999988875543 45789999974
No 190
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=75.65 E-value=3.8 Score=45.55 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=59.7
Q ss_pred eeeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCC-----CCceeEEEEeecccccccceeeeEEEccCCCC
Q 008859 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVF-----GAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (551)
Q Consensus 91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~-----g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~g 164 (551)
..++||.++.++.||.|.+.|.+...-. ...+.|++.|.+.- ..+++|++..-+.++.+......- ++...+
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~--l~~~~~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGP--LLLKPG 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhh--hhcccC
Confidence 4568999999999999999998875544 56789999987654 268999999999888754333322 222323
Q ss_pred CCCCCCceEEEEee
Q 008859 165 SPPKPGASIQLELK 178 (551)
Q Consensus 165 kp~k~~G~L~lsl~ 178 (551)
++ ...|.|.+++.
T Consensus 118 ~~-~~~g~iti~ae 130 (529)
T KOG1327|consen 118 KN-AGSGTITISAE 130 (529)
T ss_pred cc-CCcccEEEEee
Confidence 33 24566666654
No 191
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=75.11 E-value=3.5 Score=44.61 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=36.6
Q ss_pred eeEEEEeeccc-ccccceeeeEEEccCCCCCCCCCCceEEEEeeeeccCCCC
Q 008859 136 IIGTAAIPAHT-IATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (551)
Q Consensus 136 lIG~v~Ipl~~-l~~g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~~~ 186 (551)
++|.+.||++. +..|...+.||++.+...+.. ..|.| ++++|....-.|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~~~VLp 50 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEENFVLP 50 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeeeceecc
Confidence 58999999999 556788999999988766543 45666 778776654333
No 192
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=74.94 E-value=9.9 Score=36.60 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=38.7
Q ss_pred eeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCC----C---CceeEEEEeec
Q 008859 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF----G---AQIIGTAAIPA 144 (551)
Q Consensus 91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~----g---~~lIG~v~Ipl 144 (551)
.+.+.|.|.-.+.+|.|+|++.|.++-. ...|.|+.++.+.- + ...+|-+.+|+
T Consensus 53 ~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL 116 (179)
T cd08696 53 LTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPL 116 (179)
T ss_pred ceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEee
Confidence 3557888888899999999999998765 45788988874321 1 24466655555
No 193
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=72.92 E-value=18 Score=35.00 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=40.2
Q ss_pred eeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCC---------C-CceeEEEEeeccc
Q 008859 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF---------G-AQIIGTAAIPAHT 146 (551)
Q Consensus 91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~---------g-~~lIG~v~Ipl~~ 146 (551)
.+.+.|.|.-.+.+|.|+|++.|.+.-. ...|.|+.++...- + ...+|-+.+|+-+
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 3557888988889999999999987764 56789999875421 1 2456666666543
No 194
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=72.51 E-value=2.2 Score=49.58 Aligned_cols=39 Identities=31% Similarity=0.566 Sum_probs=32.0
Q ss_pred CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCC
Q 008859 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHP 118 (551)
Q Consensus 80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~ 118 (551)
...|||..+.. .-.+.|+++.++..|.||+.|++++-..
T Consensus 775 ~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s 817 (1112)
T KOG4269|consen 775 RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES 817 (1112)
T ss_pred cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc
Confidence 46788877753 3458999999999999999999997654
No 195
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=70.02 E-value=6.2 Score=42.24 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=72.6
Q ss_pred CcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhc--CCeEEEEEeCCC-CccCccC
Q 008859 240 PGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVWDDK-TSHDKLG 316 (551)
Q Consensus 240 ~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~--GV~V~iLvwD~~-~s~~~~~ 316 (551)
|.++|+.+-..|.+||+.|+++.- ||-. ....|.+-|..+-+. -.+|.+|+ |.. +......
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~lasL------YlG~---------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~ 100 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLASL------YLGK---------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPN 100 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeeee------ccch---------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcc
Confidence 367899999999999999999976 3432 245677777666554 78999997 653 1211111
Q ss_pred CCCCCcccCCcHHHHhHhcCCCcEEEec--CCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecc
Q 008859 317 VKTPGVMATHDEETKKFFKHSSVNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (551)
Q Consensus 317 ~~~~g~~~t~~~~~~~~~~~~~v~~~l~--p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~ 394 (551)
-+. |-...--.+++. ..|+|.+. |....-..++.--+..-.....|-|+.-+|++ ..+-|.||.
T Consensus 101 ~~s---~llp~~l~kkf~--e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls 166 (469)
T KOG3964|consen 101 SCS---ALLPVWLGKKFP--ERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLS 166 (469)
T ss_pred cch---hhchHHHhhhhh--hhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccch
Confidence 110 000000112222 34555542 11100000011001122456789999999995 467789998
Q ss_pred ccccCC
Q 008859 395 DGRYDT 400 (551)
Q Consensus 395 ~~R~Dt 400 (551)
+.++-.
T Consensus 167 ~dyfTN 172 (469)
T KOG3964|consen 167 NDYFTN 172 (469)
T ss_pred hhhhcc
Confidence 865543
No 196
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=63.42 E-value=76 Score=34.51 Aligned_cols=111 Identities=20% Similarity=0.360 Sum_probs=64.4
Q ss_pred CCCcEEEEEECCeeeEEeeec---CC-CCCC-e---EeeEEEEeec-------CC-----CCeEEEEEEecCC-------
Q 008859 79 TSDPYVTVVVPQATVARTRVL---KN-SQEP-V---WNEHFNIPLA-------HP-----LSNLEIQVKDDDV------- 131 (551)
Q Consensus 79 tsDpYvtV~l~~~~v~rTrvi---~n-s~nP-~---WnE~F~i~va-------h~-----~~~l~f~Vkd~d~------- 131 (551)
++.+||+|.|.+-.+ +|..+ .. +.+| . ---.|++.-+ .+ ...|++.||--..
T Consensus 35 sspCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~ 113 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVG 113 (460)
T ss_pred CCCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccc
Confidence 478999999988554 33332 22 1221 1 1244555311 11 2468999997432
Q ss_pred CCCceeEEEEeeccccc-ccc---eeeeEEEccCCCC--CCCCCCceEEEEeeeeccCCCCceeccccC
Q 008859 132 FGAQIIGTAAIPAHTIA-TGE---LISRWYDIIAPSG--SPPKPGASIQLELKFTPCDKNPLYRQGIAG 194 (551)
Q Consensus 132 ~g~~lIG~v~Ipl~~l~-~g~---~i~~w~~Ll~~~g--kp~k~~G~L~lsl~f~p~~~~~~~~~gi~~ 194 (551)
.+..+||++.||++--. .++ ..++|..| +... +..+...+|||.++-.| ||.|.---.+
T Consensus 114 ~~~klLG~v~vpldl~~ae~kp~v~hnGWi~i-Gk~~~~~~~~~~aeLHl~Vr~Ep---DPRfVFQFdg 178 (460)
T PF06219_consen 114 NSGKLLGKVRVPLDLKWAEGKPVVFHNGWISI-GKNKQGSGKSPSAELHLVVRAEP---DPRFVFQFDG 178 (460)
T ss_pred ccceEEEEEEEEeccccccCCeeEEEccceec-CCCCCCCCCCCcceEEEEEeccC---CCeeEEEcCC
Confidence 23689999999997322 222 24789998 3321 11224689999987644 5666554444
No 197
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=50.38 E-value=36 Score=29.94 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=39.7
Q ss_pred eEEEEEEecCC---CC-CceeEEEEeecccccc--------------cceeeeEEEccCCCCCCCCCCceEEEEeeee
Q 008859 121 NLEIQVKDDDV---FG-AQIIGTAAIPAHTIAT--------------GELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (551)
Q Consensus 121 ~l~f~Vkd~d~---~g-~~lIG~v~Ipl~~l~~--------------g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~ 180 (551)
.|.+.|++-.. .. ..+||.+.|++.+... ...+.+-|+|.++.|++. |+|.+.++..
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~---G~I~l~iRLs 104 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPV---GEISLYIRLS 104 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCcee---eeEEEEEEEe
Confidence 45666655432 23 6899999999987651 225778999999888854 8777777653
No 198
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=39.13 E-value=2.2e+02 Score=30.35 Aligned_cols=93 Identities=11% Similarity=0.180 Sum_probs=63.4
Q ss_pred CCcEEEEEECCeeeEEeeecCCCCCC--eEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccc-cccc-ceeee
Q 008859 80 SDPYVTVVVPQATVARTRVLKNSQEP--VWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHT-IATG-ELISR 155 (551)
Q Consensus 80 sDpYvtV~l~~~~v~rTrvi~ns~nP--~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~-l~~g-~~i~~ 155 (551)
...|+++..+... .+|..+.-+..- .-.|+..+.+..-...|.+.|+-....+...||.+.|.+.. +..+ -.-..
T Consensus 74 khiyIef~~Gr~d-~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYD-FTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceE-EEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 4578888887765 466555433322 34477777777777789999999998899999999998854 4443 34678
Q ss_pred EEEccCCCCCCCCCCceEEEEe
Q 008859 156 WYDIIAPSGSPPKPGASIQLEL 177 (551)
Q Consensus 156 w~~Ll~~~gkp~k~~G~L~lsl 177 (551)
||-+ ..+|+. .++|.+|+
T Consensus 153 Wy~c-~kDGq~---~cRIqLSF 170 (508)
T PTZ00447 153 WFVC-FKDGQE---ICKVQMSF 170 (508)
T ss_pred eEEE-ecCCce---eeeEEEEe
Confidence 9998 455552 24444443
No 199
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=38.25 E-value=3.5e+02 Score=25.46 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=42.4
Q ss_pred eEEeeecCC-----CCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEe--ecccccccceeeeEEE
Q 008859 93 VARTRVLKN-----SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAI--PAHTIATGELISRWYD 158 (551)
Q Consensus 93 v~rTrvi~n-----s~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~I--pl~~l~~g~~i~~w~~ 158 (551)
.+.|.+.+. ...=.||.-|.+.+... -..|.|+|+..|..| ..+.|-..+ |...-...-.+.-|-|
T Consensus 40 ~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP~~pG~h~~~v~~wrP 117 (168)
T PF07162_consen 40 EGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLPTQPGRHEVEVPTWRP 117 (168)
T ss_pred eEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeCCCCceEEEEEEEEee
Confidence 466666532 34468998888875543 357999999999999 677776555 4442222223555776
No 200
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=32.36 E-value=1.1e+02 Score=28.53 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=40.0
Q ss_pred CCcEEEEEECC------eeeEEeeecCCCCCCeEeeEEEEeecCC------CCeEEEEEEecCCCC--CceeEEEEeecc
Q 008859 80 SDPYVTVVVPQ------ATVARTRVLKNSQEPVWNEHFNIPLAHP------LSNLEIQVKDDDVFG--AQIIGTAAIPAH 145 (551)
Q Consensus 80 sDpYvtV~l~~------~~v~rTrvi~ns~nP~WnE~F~i~vah~------~~~l~f~Vkd~d~~g--~~lIG~v~Ipl~ 145 (551)
.|||++|++-. +..+.|.+-....+-.|--.+.++++.+ .+.|.|++++...-. ....+-+.++++
T Consensus 31 ~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~d 110 (147)
T PF14186_consen 31 IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMELD 110 (147)
T ss_dssp EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEGG
T ss_pred cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEhh
Confidence 68999999932 2344666653332333322355555544 456889998865544 467788999999
Q ss_pred cccccc
Q 008859 146 TIATGE 151 (551)
Q Consensus 146 ~l~~g~ 151 (551)
++..|.
T Consensus 111 ei~~g~ 116 (147)
T PF14186_consen 111 EIKPGP 116 (147)
T ss_dssp G--SEE
T ss_pred hccCCc
Confidence 999883
No 201
>PF13289 SIR2_2: SIR2-like domain
Probab=28.85 E-value=2e+02 Score=25.38 Aligned_cols=65 Identities=20% Similarity=0.439 Sum_probs=38.2
Q ss_pred chHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcC----CeEEEEEeCCCCccCccCC
Q 008859 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG----VRVLLLVWDDKTSHDKLGV 317 (551)
Q Consensus 242 ~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~G----V~V~iLvwD~~~s~~~~~~ 317 (551)
..|...+.++..++..|+| ||++. +..+..+|....+.. -++++++.+..
T Consensus 74 ~~~~~~l~~~l~~~~~lfi-Gys~~-----------------D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~-------- 127 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFI-GYSFN-----------------DPDIRQLLRSALENSGKSRPRHYIVIPDPD-------- 127 (143)
T ss_pred HHHHHHHHHHHcCCCEEEE-EECCC-----------------CHHHHHHHHHHHHhccCCCccEEEEEcCCc--------
Confidence 3456666666677766666 99752 235555665544442 35777763322
Q ss_pred CCCCcccCCcHHHHhHhcCCCcEE
Q 008859 318 KTPGVMATHDEETKKFFKHSSVNC 341 (551)
Q Consensus 318 ~~~g~~~t~~~~~~~~~~~~~v~~ 341 (551)
++..+.+++..||++
T Consensus 128 ---------~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 128 ---------DENEREFLEKYGIEV 142 (143)
T ss_pred ---------hHHHHHHHHHcCCEE
Confidence 134567777788875
No 202
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=27.20 E-value=4.1e+02 Score=24.09 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=45.2
Q ss_pred eeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhc-c--ceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHH
Q 008859 213 HVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEA-H--HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGE 289 (551)
Q Consensus 213 ~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A-~--~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~e 289 (551)
...+...+| .+|......|..|. .-..+..++|.+. . ..-|..+|+ -|.+..+ . .+..+.+
T Consensus 18 ~~~llfsaH----giP~~~~~~gd~Y~--~~~~~~~~~v~~~l~~~~~~~~~~fq-------S~~g~~~--W-l~P~~~~ 81 (135)
T cd00419 18 KDRLLFSAH----GLPVRDIKKGDPYP--DQCEETARLVAERLGLPFDEYELAYQ-------SRFGPGE--W-LEPSTDD 81 (135)
T ss_pred CCEEEEEcC----CCHHHHhhCCCCHH--HHHHHHHHHHHHHhCCCCCCEEEEec-------CCCCCCC--C-CCCCHHH
Confidence 345666666 46666667787884 3333455555432 2 333556663 1222111 1 2468999
Q ss_pred HHHHhhhcCCeEEEEE
Q 008859 290 LLKYKSEEGVRVLLLV 305 (551)
Q Consensus 290 lL~~ka~~GV~V~iLv 305 (551)
.|++.+++|++-.+++
T Consensus 82 ~l~~l~~~G~~~i~v~ 97 (135)
T cd00419 82 ALEELAKEGVKNVVVV 97 (135)
T ss_pred HHHHHHHcCCCeEEEE
Confidence 9999999999876665
No 203
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=26.20 E-value=2.1e+02 Score=30.51 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=57.4
Q ss_pred chhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCccccccccccccccc
Q 008859 284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTI 363 (551)
Q Consensus 284 ~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~ 363 (551)
+..+.+.|-++++.||+|.++| ...-... .|+-+. ..+|+|. |++..
T Consensus 212 D~~iI~~Ly~AS~AGV~I~LiV-RGiCcL~------Pgi~g~----------SeNI~V~----------SIVgR------ 258 (352)
T PF13090_consen 212 DPEIIDKLYEASQAGVKIDLIV-RGICCLR------PGIPGL----------SENIRVI----------SIVGR------ 258 (352)
T ss_dssp -HHHHHHHHHHHHTTEEEEEEE-SS-B-C-------TTSCTC----------CTTEEEE----------EE-SS------
T ss_pred CHHHHHHHHHHHhCCCEEEEEE-ecccccC------CCCCCC----------CCCEEEE----------Eeccc------
Confidence 4799999999999999999999 5543322 122221 2355544 22211
Q ss_pred ccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH
Q 008859 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP 443 (551)
Q Consensus 364 ~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP 443 (551)
|=.|--+...-+. +...-|+|+.|+-..-.| --..+.+-|.-|
T Consensus 259 fLEHsRi~~F~n~-----g~~~~yisSADwM~RNl~--------------------------------rRVEv~~PI~D~ 301 (352)
T PF13090_consen 259 FLEHSRIYYFGNG-----GDEEVYISSADWMTRNLD--------------------------------RRVEVAFPIYDP 301 (352)
T ss_dssp SEE--EEEEE-GC-----CS-EEEEESS-BSHHHHH--------------------------------TCEEEEEE--SH
T ss_pred ccchhheeeecCC-----CCCeEEEEccccccCCCC--------------------------------eeEEEEeEECCH
Confidence 1225555555443 224789999998762222 115788888888
Q ss_pred HHHH-HHHHHHHHHHhh
Q 008859 444 AAYD-VLINFEQRWRKA 459 (551)
Q Consensus 444 aa~d-v~~~F~~rW~~~ 459 (551)
..+. +...+.-.|+..
T Consensus 302 ~lk~~l~~il~~~l~Dn 318 (352)
T PF13090_consen 302 RLKKELKDILDLQLKDN 318 (352)
T ss_dssp HHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHhCCcC
Confidence 6654 445555556543
No 204
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=26.19 E-value=88 Score=33.84 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.8
Q ss_pred cccCccceEEEccCCCCCCcceEEEEceeeccccccC
Q 008859 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (551)
Q Consensus 363 ~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~D 399 (551)
.-+.|-+++|||+ |+=+||.++--+.|.
T Consensus 156 ~~k~~g~l~iVDa---------VsS~Gg~~~~vd~wg 183 (383)
T COG0075 156 AAKEHGALLIVDA---------VSSLGGEPLKVDEWG 183 (383)
T ss_pred HHHHcCCEEEEEe---------cccCCCcccchhhcC
Confidence 4466899999999 999999999887775
No 205
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=24.66 E-value=1.8e+02 Score=29.18 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=35.4
Q ss_pred chHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEE
Q 008859 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (551)
Q Consensus 242 ~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLv 305 (551)
+-.+.|.+++++ ..-+|..-..-++..-+++.. ..+..+.++|.++++.||+|+-+-
T Consensus 157 kHL~eL~~l~~~--~ra~vlF~vqr~d~~~f~p~~-----~~Dp~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 157 KHLRELEEILKE--SRAVVLFVVALPSVRAFSPNR-----EGDEEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHHHHHHHh--CCEEEEEEEeCCCCCEEeeCc-----ccCHHHHHHHHHHHHCCCEEEEEE
Confidence 446667666666 333333222334444444332 135799999999999999998764
No 206
>PF03494 Beta-APP: Beta-amyloid peptide (beta-APP); InterPro: IPR013803 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents the amyloid-beta peptide (A-beta), which originates as a breakdown product from the cleavage of amyloid-beta precursor protein (APP, or A4), an integral, glycosylated membrane brain protein. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 2LMQ_F 3JTI_B 2LMO_B 3MOQ_D 2LNQ_E 2LMP_G 2BEG_B 1AMC_A 3OW9_B 3U0T_F ....
Probab=22.14 E-value=68 Score=22.53 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=20.2
Q ss_pred cCccceEEEccCCCCCCcceEEE-Ecee
Q 008859 365 THHQKCVLVDTQASGNNRKITAF-IGGI 391 (551)
Q Consensus 365 ~hHqK~vVVD~~~~~~~~~~vaf-vGG~ 391 (551)
-+|||++..-.+.+.++.-+++. +||.
T Consensus 9 V~~~klvf~aEDvgSNKGAIIGLMvGgv 36 (39)
T PF03494_consen 9 VYHKKLVFLAEDVGSNKGAIIGLMVGGV 36 (39)
T ss_dssp CCCCCCCCCCCCCSSSSSEEEEEEEESE
T ss_pred EEeeEEEEEhhHcCCCCceEEEEEeeeE
Confidence 35999999988877777777776 4554
No 207
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=21.41 E-value=2.8e+02 Score=27.96 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHhc-cceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEE
Q 008859 241 GTCWEDICHAISEA-HHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (551)
Q Consensus 241 ~~~~~~l~~aI~~A-~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLv 305 (551)
.+-.+.|.++..+- +-.+.+. .+-+++.-+++..+ .+..+.++|.++.++||+|+..-
T Consensus 154 ~KHLreL~~~~~~G~ra~vlf~--v~r~d~~~F~P~~e-----~Dp~fa~~l~~A~~~GVev~~~~ 212 (235)
T COG1489 154 QKHLRELERLAKEGYRAVVLFL--VLRSDITRFSPNRE-----IDPKFAELLREAIKAGVEVLAYR 212 (235)
T ss_pred HHHHHHHHHHHHcCCceEEEEE--EecCCCcEECcccc-----cCHHHHHHHHHHHHcCCEEEEEE
Confidence 34455665555553 3333332 23334444443321 36799999999999999987663
No 208
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=21.18 E-value=38 Score=38.11 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=55.5
Q ss_pred CCCCcchHHHHH---------HHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeC
Q 008859 237 LYKPGTCWEDIC---------HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (551)
Q Consensus 237 ~y~~~~~~~~l~---------~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD 307 (551)
+|.|+..|..|+ ..|++||+.=.=-.|.++|.+.+.-... . .-.||..-|-+.++=|.+-+-|++|
T Consensus 57 DyKHR~~WRElY~vEEa~~L~~Li~aAke~~i~F~YAiSPGlDitySsp--k---E~~TLKrKLDQV~qfGC~sfAlLFD 131 (891)
T KOG3698|consen 57 DYKHRSLWRELYNVEEATYLRNLIEAAKENNINFVYAISPGLDITYSSP--K---EMDTLKRKLDQVRQFGCDSFALLFD 131 (891)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHhcCceEEEEcCCCcccccCCH--H---HHHHHHHHHHHHHhhCchhhhhhhh
Confidence 488888898776 4577788532222234555544432111 0 1256777777777779999999999
Q ss_pred CCCccCccCCCCCCcccCCcHHHHhHhcCCCcEE
Q 008859 308 DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNC 341 (551)
Q Consensus 308 ~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~ 341 (551)
|+-+. |..-|++...-|.|+.|++
T Consensus 132 DIe~~----------m~~aDkevF~sFAhAqVsi 155 (891)
T KOG3698|consen 132 DIEVQ----------MQDADKEVFTSFAHAQVSI 155 (891)
T ss_pred hHHHH----------HhHhHHHHHHHhhhheeee
Confidence 98543 3444666666666666654
No 209
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=20.72 E-value=3.9e+02 Score=25.34 Aligned_cols=83 Identities=22% Similarity=0.416 Sum_probs=44.1
Q ss_pred cEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccce---eeeEEE
Q 008859 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL---ISRWYD 158 (551)
Q Consensus 82 pYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~---i~~w~~ 158 (551)
.|++ +++++-+.+|+++-..+-.+ . |+++++--.....--||.+.||+++-...+. -++-+
T Consensus 23 VffK--vDG~RF~q~RTiKl~tdskY----k---------v~V~~kP~~~~~~~~igg~~~~l~~ks~d~~~~vYs~~~- 86 (161)
T PF15043_consen 23 VFFK--VDGQRFGQNRTIKLLTDSKY----K---------VDVTIKPPTVETSLSIGGVSLPLEEKSRDEQSVVYSGQY- 86 (161)
T ss_pred EEEE--ecccccCCceEEEEecCCEE----E---------EEEEEcCCcceeeeEecceeeceeecccCCCeeEEEEEe-
Confidence 3544 45888888888765443332 2 3333333222223457888899877543221 12222
Q ss_pred ccCCCCCCCCCCc---eEEEEeeeecc
Q 008859 159 IIAPSGSPPKPGA---SIQLELKFTPC 182 (551)
Q Consensus 159 Ll~~~gkp~k~~G---~L~lsl~f~p~ 182 (551)
+..|-+....| .|.|.|+|.+.
T Consensus 87 --~T~G~~~TKsG~Rq~i~i~~~f~~~ 111 (161)
T PF15043_consen 87 --DTEGVPPTKSGERQPIQISMQFNPG 111 (161)
T ss_pred --ecCCCCcccCCccccEEEEEEecCc
Confidence 33343332333 48888888665
No 210
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=20.62 E-value=2.5e+02 Score=25.33 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=37.3
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCC--CC-CCCCCchhHHHHHHHhhhcCCeEEEE
Q 008859 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQT--RP-LPRGGDLTLGELLKYKSEEGVRVLLL 304 (551)
Q Consensus 241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~--~~-~p~g~~~~l~elL~~ka~~GV~V~iL 304 (551)
++||..++-|+..|.----.+-|.....++|++... +- .|. ..+|.++.+.+.+.||+.++=
T Consensus 17 ~r~ya~f~~A~~a~smg~dV~iF~t~dG~~l~~K~~~ekik~~~--~~~l~~~~~~a~e~GVk~yvC 81 (120)
T COG2044 17 ERAYAPFVMATAAASMGYDVTIFFTMDGVTLVKKKVAEKIKHPN--FPPLEELIKQAIEAGVKIYVC 81 (120)
T ss_pred HHHHhHHHHHHHHHhCCCceEEEEEeccceeeeecchhhhcCCC--CCCHHHHHHHHHHcCCEEEEE
Confidence 577877777777764322222222333445664322 11 122 489999999999999877653
No 211
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=20.32 E-value=1.7e+02 Score=24.77 Aligned_cols=46 Identities=33% Similarity=0.483 Sum_probs=27.9
Q ss_pred ceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcC-CeEEEE
Q 008859 256 HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG-VRVLLL 304 (551)
Q Consensus 256 ~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~G-V~V~iL 304 (551)
+.|.| +...+.+++.+....+.+. ....+.++|++..+.| |+|++-
T Consensus 35 ~~v~v--~~~g~gv~~~~~~~~~~~~-~~~~~~~~l~~l~~~g~v~i~~C 81 (122)
T PF02635_consen 35 HDVVV--FFHGDGVKLALKDQKPNPE-GDPPLQELLKELKEAGGVKIYVC 81 (122)
T ss_dssp SEEEE--EE-GGGGGGGBTTCHCGGC-TSHCHHHHHHHHHHTTT-EEEEE
T ss_pred CcEEE--EEEchHHHHHHhccccccc-ccccHHHHHHHHHhcCCcEEEEc
Confidence 45554 4446677766552111111 2578999999999997 888765
Done!